Citrus Sinensis ID: 008467

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560----
Protein Sequence
MSSITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLEMEANLTCQSDVDMDEDFSFLQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHEIEHGRVKEKERLDREKERERDKERVENEKEPEKQHESHPDKEMLTVQEEKVNSKPEENGVLQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFRM
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEcccccccccccccEEEEEEcccccEEEEEcccccEEEccccccccccccccEEEEEEcccccEEEEccccccEEEEEcccccccccccccccccEEEEccccccccccccEEEEEEcccccEEEEEEccccEEEEccccccEEccccccccEEEEEEcccccEEEEEcccccEEEEEccccEEEEEcccccccEEEEEEccccEEEEEEccccEEEEEccccEEEEccccccccEEEEEEcccccEEEEccccccEEEEEccccEEEEEcccccccEEEEEEccccccccccccccEEEEccccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEEccccEEEEEccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHcccccHHHEEcccccccccccccccccHHHHHHHHHHcccHEEEEEEcccccccccccccHHHcHHHHHcHcHHHHHHHHHHHHcccccHHHHccccccccEccccccEEEEEEEEccccccEEEEEEccccccccccccccccccccccEEEEEccccccEEEEEEcccccEEEEccccccEEEccHHHHHcccccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEccccccEEEEcccccccccccccEEEEEEcccccEEEEEccccEEEEEEccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEccccccccccccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEEcc
Coil and Loop (DISEMBL)
MSSITSEELNYLVFRYLQESGLLHSAFVLGYEaginkcnidgnlvpprALITFVQKGLQYLEMEanltcqsdvdmdedfsflqpmdliTKDVCELRQMVKEKKKnlngdrdkendvdrgheiehgrvkeKERLDREKERERDKERvenekepekqheshpdkemLTVQEEkvnskpeengvlqgekgpepmdiattsasesfeipnsdvtileghtsevcacawspagsllasgsgdstaRIWTiadgtsnggaqngplNVLVLKHVkgrtnekskdvttldwngegtllatgsydgqariwstngdlkctlskhkgpifslkwnkkgdylltgscdktaIVWDVKTEEWKQqfefhsgptldvdwrnnvsfatsstdnmiyvckigenrpiktfaghqgevncvkwdptgsllascsDDVTAKIWNMKQDKYVHDLREHSkeiytirwsptgsgtnnpnqqLILASASFDSTVKLWDVELGKLLYslnghrepvyslafsptgeylasgsldksmhiwslkegkivktytgnggifeVCWNKEGDKIAACFANHTVCVLDFRM
Flexible Loop (DISEMBL)
MSSITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLEMEANLTCQSDVDMDEDFSFLQPMDLITKDVCELRQMVKekkknlngdrdkendvdrgheiehgrvkekerldrekererdkervenekepekqheshpdkemltVQEEkvnskpeengvlqgekgpEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGtsnggaqngpLNVLVLKHVKgrtnekskdvttldwngeGTLLatgsydgqaRIWSTNGDLKCTLSKHKGpifslkwnkkgdylLTGSCDKTAIVWDVKTEEWKQQFEfhsgptldvdwrNNVSFatsstdnmiyVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIytirwsptgsgtNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFRM
Low Complexity Region (SEG)
MSSITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLEMEANLTCQSDVDMDEDFSFLQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHEIEHGrvkekerldrekererdkervenekePEKQHESHPDKEMLTVQEEKVNSKPEENGVLQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPagsllasgsgDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFRM
Disordered region (IsUnstruct)
********LNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLEMEANLTCQSDVDMDEDFSFLQPMDLITKDVCELR***************************************************************************************************************DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT****KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT********QQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDF**
Disordered Region (DISOPRED)
**SITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLEMEANLTC*********FSFLQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHEIEHGRVKEKERLDREKER********NEKEPEKQHESHPDKEMLTVQEEKVNSKPEENGVLQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFRM
Disordered Region (DISEMBL)
MSSITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLEMEANLTCQSDVDMDEDFSFLQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHEIEHGRVKE****************************************************LQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFRM
Disordered Region (DISPRO)
***ITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLEMEANLTCQSDVDMDEDFSFLQPMDLITKDVCELRQMVKEKKKNLNGDRD*E***DRGHEIEHGRVKEKERLDREKERERDKERVENEKEPEKQH*SHPDKEMLTVQEEKVNSKPEENGVLQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFRM
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLEMEANLTCQSDVDMDEDFSFLQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHEIEHGRVKExxxxxxxxxxxxxxxxxxxxxEPEKQHESHPDKEMLTVQEEKVNSKPEENGVLQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFRM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	564	2.2.26 [Sep-21-2011]
Q6GPC6	522	F-box-like/WD repeat-cont	N/A	no	0.916	0.990	0.5	1e-156
Q7SZM9	519	F-box-like/WD repeat-cont	N/A	no	0.911	0.990	0.496	1e-156
Q8BHJ5	514	F-box-like/WD repeat-cont	yes	no	0.902	0.990	0.494	1e-155
Q9BQ87	522	F-box-like/WD repeat-cont	yes	no	0.911	0.984	0.500	1e-155
Q4R8H1	569	F-box-like/WD repeat-cont	N/A	no	0.909	0.901	0.491	1e-154
O60907	577	F-box-like/WD repeat-cont	no	no	0.923	0.902	0.492	1e-154
Q9QXE7	527	F-box-like/WD repeat-cont	no	no	0.921	0.986	0.5	1e-154
Q9BZK7	514	F-box-like/WD repeat-cont	no	no	0.898	0.986	0.484	1e-153
Q95RJ9	700	F-box-like/WD repeat-cont	yes	no	0.641	0.517	0.594	1e-131
Q8YRI1	1526	Uncharacterized WD repeat	yes	no	0.567	0.209	0.324	2e-45

>sp|Q6GPC6|TB1RB_XENLA F-box-like/WD repeat-containing protein TBL1XR1-B OS=Xenopus laevis GN=tbl1xr1-b PE=2 SV=1

 Score =  553 bits (1424), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 282/564 (50%), Positives = 363/564 (64%), Gaps = 47/564 (8%)

Query: 3   SITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLE 62
           SI+S+E+N+LV+RYLQESG  HSAF  G E+ I++ NI+G LVPP ALI+ +QKGLQY+E
Sbjct: 2   SISSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGALVPPAALISIIQKGLQYVE 61

Query: 63  MEANLTCQSDVDMDEDFSFLQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHEI 122
            E ++     +        L  +D +  DV + RQ            RDK          
Sbjct: 62  AEVSINEDGTLFDGRPIESLSLIDAVMPDVVQTRQQAY---------RDKLA-------- 104

Query: 123 EHGRVKEKERLDREKERERDKERVENEKEPEKQHESHPDKEMLTVQEEKVNSKPEENGVL 182
              + ++                  N++ P K  ES  + E             E  G  
Sbjct: 105 ---QQQQAAAAAAAAAAAAAATSANNQQPPAKNGESTANGE-------------ENGGHA 148

Query: 183 QGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARI 242
                 + M++         EIP S   +L GH SEV  CAW+P   LLASGSGDSTARI
Sbjct: 149 LANNHTDMMEV-----DGDVEIPPSKAVVLRGHESEVFICAWNPVSDLLASGSGDSTARI 203

Query: 243 WTIADGTSNGGAQNGPLNVLVLKHV---KGRTNEKSKDVTTLDWNGEGTLLATGSYDGQA 299
           W +++ +++G  Q      LVL+H     G+    +KDVT+LDWN EGTLLATGSYDG A
Sbjct: 204 WNLSENSTSGSTQ------LVLRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGSYDGFA 257

Query: 300 RIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG 359
           RIW+ +G+L  TL +HKGPIF+LKWNKKG+++L+   DKT I+WD  T E KQQF FHS 
Sbjct: 258 RIWTKDGNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSA 317

Query: 360 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 419
           P LDVDW++N +FA+ STD  I+VCK+G++RPIKTF GH  EVN +KWDPTG+LLASCSD
Sbjct: 318 PALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSD 377

Query: 420 DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 479
           D+T KIW+MK D  VHDL+ H+KEIYTI+WSPTG GTNNPN  L+LASASFDSTV+LWDV
Sbjct: 378 DMTLKIWSMKHDTCVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDV 437

Query: 480 ELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEV 539
           + G  +++L  H+EPVYS+AFSP G YLASGS DK +HIW+ + G +V +Y G GGIFEV
Sbjct: 438 DRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSYRGTGGIFEV 497

Query: 540 CWNKEGDKIAACFANHTVCVLDFR 563
           CWN  GDK+ A  ++ +VCVLD R
Sbjct: 498 CWNAAGDKVGASASDGSVCVLDLR 521

F-box-like protein which acts as an integral component of the N-CoR transcriptional corepressor complex. Probably regulates transcription activation mediated by nuclear receptors. May mediate the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of the N-CoR complex, thereby allowing cofactor exchange and transcription activation.
Xenopus laevis (taxid: 8355)

>sp|Q7SZM9|TB1RA_XENLA F-box-like/WD repeat-containing protein TBL1XR1-A OS=Xenopus laevis GN=tbl1xr1-a PE=1 SV=1

 Score =  550 bits (1418), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 280/564 (49%), Positives = 364/564 (64%), Gaps = 50/564 (8%)

Query: 3   SITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLE 62
           SI+S+E+N+LV+RYLQESG  HSAF  G E+ I++ NI+G L PP ALI+ +QKGLQY+E
Sbjct: 2   SISSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGALAPPAALISIIQKGLQYVE 61

Query: 63  MEANLTCQSDVDMDEDFSFLQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHEI 122
            E ++     +        L  +D +  DV + RQ            RDK          
Sbjct: 62  AEVSINEDGTLFDGRPIESLSLIDAVMPDVVQTRQQAY---------RDK---------- 102

Query: 123 EHGRVKEKERLDREKERERDKERVENEKEPEKQHESHPDKEMLTVQEEKVNSKPEENGVL 182
               + +++                N++ P K  E+  + E             E  G  
Sbjct: 103 ----LAQQQTAAAAAAAAAAAATPNNQQPPAKNGENTANGE-------------ENGGHA 145

Query: 183 QGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARI 242
                 + M++         EIP+S   +L GH SEV  CAW+P   LLASGSGDSTARI
Sbjct: 146 LANNHTDMMEV-----DGDVEIPSSKAVVLRGHESEVFICAWNPVSDLLASGSGDSTARI 200

Query: 243 WTIADGTSNGGAQNGPLNVLVLKHV---KGRTNEKSKDVTTLDWNGEGTLLATGSYDGQA 299
           W +++ +++G  Q      LVL+H     G+    +KDVT+LDWN EGTLLATGSYDG A
Sbjct: 201 WNLSENSTSGSTQ------LVLRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGSYDGFA 254

Query: 300 RIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG 359
           RIW+ +G+L  TL +HKGPIF+LKWNKKG+++L+   DKT I+WD  T E KQQF FHS 
Sbjct: 255 RIWTKDGNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSA 314

Query: 360 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 419
           P LDVDW++N +FA+ STD  I+VCK+G++RPIKTF GH  EVN +KWDPTG+LLASCSD
Sbjct: 315 PALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSD 374

Query: 420 DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 479
           D+T KIW+MK D  VHDL+ H+KEIYTI+WSPTG GTNNPN  L+LASASFDSTV+LWDV
Sbjct: 375 DMTLKIWSMKHDTCVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDV 434

Query: 480 ELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEV 539
           + G  +++L  H+EPVYS+AFSP G YLASGS DK +HIW+ + G +V +Y G GGIFEV
Sbjct: 435 DRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSYRGTGGIFEV 494

Query: 540 CWNKEGDKIAACFANHTVCVLDFR 563
           CWN  GDK+ A  ++ +VCVLD R
Sbjct: 495 CWNAAGDKVGASASDGSVCVLDLR 518

F-box-like protein which acts as an integral component of the N-CoR transcriptional corepressor complex. Probably regulates transcription activation mediated by nuclear receptors. May mediate the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of the N-CoR complex, thereby allowing cofactor exchange and transcription activation.

Xenopus laevis (taxid: 8355)

>sp|Q8BHJ5|TBL1R_MOUSE F-box-like/WD repeat-containing protein TBL1XR1 OS=Mus musculus GN=Tbl1xr1 PE=2 SV=1

 Score =  550 bits (1417), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 279/564 (49%), Positives = 365/564 (64%), Gaps = 55/564 (9%)

Query: 3   SITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLE 62
           SI+S+E+N+LV+RYLQESG  HSAF  G E+ I++ NI+G LVPP ALI+ +QKGLQY+E
Sbjct: 2   SISSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGALVPPAALISIIQKGLQYVE 61

Query: 63  MEANLTCQSDVDMDEDFSFLQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHEI 122
            E ++     +        L  +D +  DV + RQ            RDK   + + H  
Sbjct: 62  AEVSINEDGTLFDGRPIESLSLIDAVMPDVVQTRQQAY---------RDK---LAQQHAA 109

Query: 123 EHGRVKEKERLDREKERERDKERVENEKEPEKQHESHPDKEMLTVQEEKVNSKPEENGVL 182
                        ++   ++ E   N +E      ++   +M+ V  +            
Sbjct: 110 A---AAAAAAATNQQGSAKNGENTANGEENGAHTIANNHTDMMEVDGD------------ 154

Query: 183 QGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARI 242
                               EIP++   +L GH SEV  CAW+P   LLASGSGDSTARI
Sbjct: 155 -------------------VEIPSNKAVVLRGHESEVFICAWNPVSDLLASGSGDSTARI 195

Query: 243 WTIADGTSNGGAQNGPLNVLVLKHV---KGRTNEKSKDVTTLDWNGEGTLLATGSYDGQA 299
           W +++ +++G  Q      LVL+H     G+    +KDVT+LDWN EGTLLATGSYDG A
Sbjct: 196 WNLSENSTSGPTQ------LVLRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGSYDGFA 249

Query: 300 RIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG 359
           RIW+ +G+L  TL +HKGPIF+LKWNKKG+++L+   DKT I+WD  T E KQQF FHS 
Sbjct: 250 RIWTKDGNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSA 309

Query: 360 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 419
           P LDVDW++N +FA+ STD  I+VCK+G++RPIKTF GH  EVN +KWDPTG+LLASCSD
Sbjct: 310 PALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSD 369

Query: 420 DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 479
           D+T KIW+MKQD  VHDL+ H+KEIYTI+WSPTG GTNNPN  L+LASASFDSTV+LWDV
Sbjct: 370 DMTLKIWSMKQDNCVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDV 429

Query: 480 ELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEV 539
           + G  +++L  H+EPVYS+AFSP G YLASGS DK +HIW+ + G +V +Y G GGIFEV
Sbjct: 430 DRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSYRGTGGIFEV 489

Query: 540 CWNKEGDKIAACFANHTVCVLDFR 563
           CWN  GDK+ A  ++ +VCVLD R
Sbjct: 490 CWNAAGDKVGASASDGSVCVLDLR 513

F-box-like protein involved in the recruitment of the ubiquitin/19S proteasome complex to nuclear receptor-regulated transcription units. Plays an essential role in transcription activation mediated by nuclear receptors. Probably acts as integral component of the N-Cor corepressor complex that mediates the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of N-Cor complex, thereby allowing cofactor exchange, and transcription activation.

Mus musculus (taxid: 10090)

>sp|Q9BQ87|TBL1Y_HUMAN F-box-like/WD repeat-containing protein TBL1Y OS=Homo sapiens GN=TBL1Y PE=2 SV=1

 Score =  548 bits (1412), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 284/567 (50%), Positives = 363/567 (64%), Gaps = 53/567 (9%)

Query: 3   SITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLE 62
           SITS+E+N+LV+RYLQESG  HSAF  G E+ I++ NI+G LVPP ALI+ +QKGLQY+E
Sbjct: 2   SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPSALISILQKGLQYVE 61

Query: 63  MEANLTCQSDVDMDEDFSFLQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHEI 122
            E ++     V        L  +  +  DV ++RQ                         
Sbjct: 62  AEISINKDGTVFDSRPIESLSLIVAVIPDVVQMRQQAF---------------------- 99

Query: 123 EHGRVKEKERLDREKERERDKERVENEKE----PEKQHESHPDKEMLTVQEEKVNSKPEE 178
                   E+L +++      E     K     P    + +P K     +E  VN   EE
Sbjct: 100 -------GEKLTQQQASAAATEASAMAKAATMTPAAISQQNPPKN----REATVNG--EE 146

Query: 179 NGVLQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDS 238
           NG  +     +PM+I         EIP +  T+L GH SEV  CAW+P   LLASGSGDS
Sbjct: 147 NGAHEINNHSKPMEI-----DGDVEIPPNKATVLRGHESEVFICAWNPVSDLLASGSGDS 201

Query: 239 TARIWTIADGTSNGGAQNGPLNVLVLKHV---KGRTNEKSKDVTTLDWNGEGTLLATGSY 295
           TARIW + + ++ G  Q      LVL+H     G     +KDVT+LDWN +GTLLA GSY
Sbjct: 202 TARIWNLNENSNGGSTQ------LVLRHCIREGGHDVPSNKDVTSLDWNSDGTLLAMGSY 255

Query: 296 DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE 355
           DG ARIW+ NG+L  TL +HKGPIF+LKWNKKG+Y+L+   DKT I+WD  T E KQQF 
Sbjct: 256 DGFARIWTENGNLASTLGQHKGPIFALKWNKKGNYVLSAGVDKTTIIWDAHTGEAKQQFP 315

Query: 356 FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA 415
           FHS P LDVDW+NN++FA+ STD  I+VC++G + P+KTF GH  EVN +KWDP+G LLA
Sbjct: 316 FHSAPALDVDWQNNMTFASCSTDMCIHVCRLGCDHPVKTFQGHTNEVNAIKWDPSGMLLA 375

Query: 416 SCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVK 475
           SCSDD+T KIW+MKQD  VHDL+ HSKEIYTI+WSPTG  T+NPN  ++LASASFDSTV+
Sbjct: 376 SCSDDMTLKIWSMKQDACVHDLQAHSKEIYTIKWSPTGPATSNPNSSIMLASASFDSTVR 435

Query: 476 LWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG 535
           LWDVE G   ++L  H+EPVYS+AFSP G+YLASGS DK +HIW+ + G +V +Y G GG
Sbjct: 436 LWDVEQGVCTHTLMKHQEPVYSVAFSPDGKYLASGSFDKYVHIWNTQSGSLVHSYQGTGG 495

Query: 536 IFEVCWNKEGDKIAACFANHTVCVLDF 562
           IFEVCWN  GDK+ A  ++ +VCVLD 
Sbjct: 496 IFEVCWNARGDKVGASASDGSVCVLDL 522

F-box-like protein involved in the recruitment of the ubiquitin/19S proteasome complex to nuclear receptor-regulated transcription units. Plays an essential role in transcription activation mediated by nuclear receptors. Probably acts as integral component of corepressor complexes that mediates the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of transcription repressor complexes, thereby allowing cofactor exchange.

Homo sapiens (taxid: 9606)

>sp|Q4R8H1|TBL1X_MACFA F-box-like/WD repeat-containing protein TBL1X OS=Macaca fascicularis GN=TBL1X PE=2 SV=1

 Score =  546 bits (1406), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 277/564 (49%), Positives = 361/564 (64%), Gaps = 51/564 (9%)

Query: 3   SITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLE 62
           SITS+E+N+LV+RYLQESG  HSAF  G E+ I++ NI+G LVPP ALI+ +QKGLQY+E
Sbjct: 53  SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVE 112

Query: 63  MEANLTCQSDVDMDEDFSFLQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHEI 122
            E ++     V        L  +D +  DV + RQ    +K                   
Sbjct: 113 AEISINEDGTVFDGRPIESLSLIDAVMPDVVQTRQRAFREK------------------- 153

Query: 123 EHGRVKEKERLDREKERERDKERVENEKEPEKQHESHPDKEMLTVQEEKVNSKPEENGVL 182
               + +++                +++ P K             +E  VN   EEN   
Sbjct: 154 ----LAQQQASAAAAAAAATTSASVSQQNPSKN------------REATVNG--EENRAH 195

Query: 183 QGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARI 242
                 +PM+I         +IP+S  T+L GH SEV  CAW+P   LLASGSGDSTARI
Sbjct: 196 SVNNHAKPMEI-----DGEVDIPSSKATVLRGHESEVFICAWNPVSDLLASGSGDSTARI 250

Query: 243 WTIADGTSNGGAQNGPLNVLVLKHV---KGRTNEKSKDVTTLDWNGEGTLLATGSYDGQA 299
           W + + ++ G  Q      LVL+H     G     +KDVT+LDWN  GTLLATGSYDG A
Sbjct: 251 WNLNENSNGGSTQ------LVLRHCIREGGHDVPSNKDVTSLDWNTNGTLLATGSYDGFA 304

Query: 300 RIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG 359
           RIW+ +G+L  TL +HKGPIF+LKWN+KG+Y+L+   DKT I+WD  T E KQQF FHS 
Sbjct: 305 RIWTEDGNLASTLGQHKGPIFALKWNRKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSA 364

Query: 360 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 419
           P LDVDW+NN++FA+ STD  I+VC++G +RP+KTF GH  EVN +KWDP+G LLASCSD
Sbjct: 365 PALDVDWQNNMTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSD 424

Query: 420 DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 479
           D+T KIW+MKQ+  +HDL+ H+KEIYTI+WSPTG  T+NPN  ++LASASFDSTV+LWD+
Sbjct: 425 DMTLKIWSMKQEVCIHDLQAHNKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDI 484

Query: 480 ELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEV 539
           E G   ++L  H+EPVYS+AFSP G YLASGS DK +HIW+ + G +V +Y G GGIFEV
Sbjct: 485 ERGVCTHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQSGNLVHSYRGTGGIFEV 544

Query: 540 CWNKEGDKIAACFANHTVCVLDFR 563
           CWN  GDK+ A  ++ +VCVLD R
Sbjct: 545 CWNARGDKVGASASDGSVCVLDLR 568

F-box-like protein involved in the recruitment of the ubiquitin/19S proteasome complex to nuclear receptor-regulated transcription units. Plays an essential role in transcription activation mediated by nuclear receptors. Probably acts as integral component of corepressor complexes that mediates the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of transcription repressor complexes, thereby allowing cofactor exchange.

Macaca fascicularis (taxid: 9541)

>sp|O60907|TBL1X_HUMAN F-box-like/WD repeat-containing protein TBL1X OS=Homo sapiens GN=TBL1X PE=1 SV=3

 Score =  545 bits (1405), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 278/564 (49%), Positives = 359/564 (63%), Gaps = 43/564 (7%)

Query: 3   SITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLE 62
           SITS+E+N+LV+RYLQESG  HSAF  G E+ I++ NI+G LVPP ALI+ +QKGLQY+E
Sbjct: 53  SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVE 112

Query: 63  MEANLTCQSDVDMDEDFSFLQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHEI 122
            E ++     V        L  +D +  DV + RQ    +K                   
Sbjct: 113 AEISINEDGTVFDGRPIESLSLIDAVMPDVVQTRQQAFREK------------------- 153

Query: 123 EHGRVKEKERLDREKERERDKERVENEKEPEKQHESHPDKEMLTVQEEKVNSKPEENGVL 182
               + +++                           +P K     +E  VN   EEN   
Sbjct: 154 ----LAQQQASAAAAAAAATAAATAATTTSAGVSHQNPSKN----REATVNG--EENRAH 203

Query: 183 QGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARI 242
                 +PM+I         EIP+S  T+L GH SEV  CAW+P   LLASGSGDSTARI
Sbjct: 204 SVNNHAKPMEI-----DGEVEIPSSKATVLRGHESEVFICAWNPVSDLLASGSGDSTARI 258

Query: 243 WTIADGTSNGGAQNGPLNVLVLKHV---KGRTNEKSKDVTTLDWNGEGTLLATGSYDGQA 299
           W + + ++ G  Q      LVL+H     G     +KDVT+LDWN  GTLLATGSYDG A
Sbjct: 259 WNLNENSNGGSTQ------LVLRHCIREGGHDVPSNKDVTSLDWNTNGTLLATGSYDGFA 312

Query: 300 RIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG 359
           RIW+ +G+L  TL +HKGPIF+LKWN+KG+Y+L+   DKT I+WD  T E KQQF FHS 
Sbjct: 313 RIWTEDGNLASTLGQHKGPIFALKWNRKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSA 372

Query: 360 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 419
           P LDVDW+NN +FA+ STD  I+VC++G +RP+KTF GH  EVN +KWDP+G LLASCSD
Sbjct: 373 PALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSD 432

Query: 420 DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 479
           D+T KIW+MKQ+  +HDL+ H+KEIYTI+WSPTG  T+NPN  ++LASASFDSTV+LWD+
Sbjct: 433 DMTLKIWSMKQEVCIHDLQAHNKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDI 492

Query: 480 ELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEV 539
           E G   ++L  H+EPVYS+AFSP G+YLASGS DK +HIW+ + G +V +Y G GGIFEV
Sbjct: 493 ERGVCTHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGNLVHSYRGTGGIFEV 552

Query: 540 CWNKEGDKIAACFANHTVCVLDFR 563
           CWN  GDK+ A  ++ +VCVLD R
Sbjct: 553 CWNARGDKVGASASDGSVCVLDLR 576

F-box-like protein involved in the recruitment of the ubiquitin/19S proteasome complex to nuclear receptor-regulated transcription units. Plays an essential role in transcription activation mediated by nuclear receptors. Probably acts as integral component of corepressor complexes that mediates the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of transcription repressor complexes, thereby allowing cofactor exchange.

Homo sapiens (taxid: 9606)

>sp|Q9QXE7|TBL1X_MOUSE F-box-like/WD repeat-containing protein TBL1X OS=Mus musculus GN=Tbl1x PE=2 SV=2

 Score =  545 bits (1404), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 283/566 (50%), Positives = 369/566 (65%), Gaps = 46/566 (8%)

Query: 3   SITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLE 62
           SITS+E+N+LV+RYLQESG  HSAF  G E+ I++ NI+G LVPP ALI+ +QKGLQY+E
Sbjct: 2   SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVE 61

Query: 63  MEANLTCQSDVDMDEDFSFL--QPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGH 120
            E        + ++ED +    +P++ ++     +  +V+ +++     R+K        
Sbjct: 62  AE--------ISINEDGTVFDGRPIESLSLIDAVMPDVVQTRQQAF---REK-------- 102

Query: 121 EIEHGRVKEKERLDREKERERDKERVENEKEPEKQHESHPDKEMLTVQEEKVNSKPEENG 180
                  +++                     P    + +P K      E  VN   EENG
Sbjct: 103 -----LAQQQANAAAAAAAAAATATSTAATTPAAAAQQNPPKN----GEATVNG--EENG 151

Query: 181 VLQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTA 240
                   +PM+I         EIP S  T+L GH SEV  CAW+P   LLASGSGDSTA
Sbjct: 152 AHAINNHSKPMEI-----DGDVEIPPSKATVLRGHESEVFICAWNPVSDLLASGSGDSTA 206

Query: 241 RIWTIADGTSNGGAQNGPLNVLVLKHV---KGRTNEKSKDVTTLDWNGEGTLLATGSYDG 297
           RIW + + ++ G  Q      LVL+H     G     +KDVT+LDWN +GTLLATGSYDG
Sbjct: 207 RIWNLNENSNGGSTQ------LVLRHCIREGGHDVPSNKDVTSLDWNSDGTLLATGSYDG 260

Query: 298 QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH 357
            ARIW+ +G+L  TL +HKGPIF+LKWNKKG+Y+L+   DKT I+WD  T E KQQF FH
Sbjct: 261 FARIWTEDGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDAHTGEAKQQFPFH 320

Query: 358 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASC 417
           S P LDVDW+NN +FA+ STD  I+VC++G +RP+KTF GH  EVN +KWDP+G LLASC
Sbjct: 321 SAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASC 380

Query: 418 SDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW 477
           SDD+T KIW+MKQD  VHDL+ HSKEIYTI+WSPTG  T+NPN  ++LASASFDSTV+LW
Sbjct: 381 SDDMTLKIWSMKQDACVHDLQAHSKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLW 440

Query: 478 DVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIF 537
           DVE G  +++L  H+EPVYS+AFSP G+YLASGS DK +HIW+ + G +V +Y G GGIF
Sbjct: 441 DVERGVCIHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGSLVHSYRGTGGIF 500

Query: 538 EVCWNKEGDKIAACFANHTVCVLDFR 563
           EVCWN  GDK+ A  ++ +VCVLD R
Sbjct: 501 EVCWNARGDKVGASASDGSVCVLDLR 526

F-box-like protein involved in the recruitment of the ubiquitin/19S proteasome complex to nuclear receptor-regulated transcription units. Plays an essential role in transcription activation mediated by nuclear receptors. Probably acts as integral component of corepressor complexes that mediates the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of transcription repressor complexes, thereby allowing cofactor exchange.

Mus musculus (taxid: 10090)

>sp|Q9BZK7|TBL1R_HUMAN F-box-like/WD repeat-containing protein TBL1XR1 OS=Homo sapiens GN=TBL1XR1 PE=1 SV=1

 Score =  541 bits (1394), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 274/566 (48%), Positives = 370/566 (65%), Gaps = 59/566 (10%)

Query: 3   SITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLE 62
           SI+S+E+N+LV+RYLQESG  HSAF  G E+ I++ NI+G LVPP ALI+ +QKGLQY+E
Sbjct: 2   SISSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGALVPPAALISIIQKGLQYVE 61

Query: 63  MEANLTCQSDVDMDEDFSFL--QPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGH 120
                   ++V ++ED +    +P++ ++     +  +V+ +++            D+  
Sbjct: 62  --------AEVSINEDGTLFDGRPIESLSLIDAVMPDVVQTRQQAYR---------DKLA 104

Query: 121 EIEHGRVKEKERLDREKERERDKERVENEKEPEKQHESHPDKEMLTVQEEKVNSKPEENG 180
           + +            ++   ++ E   N +E      ++   +M+ V  +          
Sbjct: 105 QQQAAAAAAAAAAASQQGSAKNGENTANGEENGAHTIANNHTDMMEVDGD---------- 154

Query: 181 VLQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTA 240
                                 EIP +   +L GH SEV  CAW+P   LLASGSGDSTA
Sbjct: 155 ---------------------VEIPPNKAVVLRGHESEVFICAWNPVSDLLASGSGDSTA 193

Query: 241 RIWTIADGTSNGGAQNGPLNVLVLKHV---KGRTNEKSKDVTTLDWNGEGTLLATGSYDG 297
           RIW +++ +++G  Q      LVL+H     G+    +KDVT+LDWN EGTLLATGSYDG
Sbjct: 194 RIWNLSENSTSGSTQ------LVLRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGSYDG 247

Query: 298 QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH 357
            ARIW+ +G+L  TL +HKGPIF+LKWNKKG+++L+   DKT I+WD  T E KQQF FH
Sbjct: 248 FARIWTKDGNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFH 307

Query: 358 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASC 417
           S P LDVDW++N +FA+ STD  I+VCK+G++RPIKTF GH  EVN +KWDPTG+LLASC
Sbjct: 308 SAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASC 367

Query: 418 SDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW 477
           SDD+T KIW+MKQD  VHDL+ H+KEIYTI+WSPTG GTNNPN  L+LASASFDSTV+LW
Sbjct: 368 SDDMTLKIWSMKQDNCVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLW 427

Query: 478 DVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIF 537
           DV+ G  +++L  H+EPVYS+AFSP G YLASGS DK +HIW+ + G +V +Y G GGIF
Sbjct: 428 DVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSYRGTGGIF 487

Query: 538 EVCWNKEGDKIAACFANHTVCVLDFR 563
           EVCWN  GDK+ A  ++ +VCVLD R
Sbjct: 488 EVCWNAAGDKVGASASDGSVCVLDLR 513

F-box-like protein involved in the recruitment of the ubiquitin/19S proteasome complex to nuclear receptor-regulated transcription units. Plays an essential role in transcription activation mediated by nuclear receptors. Probably acts as integral component of the N-Cor corepressor complex that mediates the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of N-Cor complex, thereby allowing cofactor exchange, and transcription activation.

Homo sapiens (taxid: 9606)

>sp|Q95RJ9|EBI_DROME F-box-like/WD repeat-containing protein ebi OS=Drosophila melanogaster GN=ebi PE=1 SV=2

 Score =  469 bits (1206), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 224/377 (59%), Positives = 274/377 (72%), Gaps = 15/377 (3%)

Query: 190 PMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGT 249
           PMDI      E+ EIP S   +L GH SEV  CAW+P+  LLASGSGDSTARIW ++D  
Sbjct: 334 PMDI-----DENIEIPESKARVLRGHESEVFICAWNPSRDLLASGSGDSTARIWDMSDAN 388

Query: 250 SNGGAQNGPLNVLVLKHV---KGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG 306
           +N        N LVL+H     G     +KDVT+LDWN +G+LLATGSYDG ARIW T+G
Sbjct: 389 TNS-------NQLVLRHCIQKGGAEVPSNKDVTSLDWNCDGSLLATGSYDGYARIWKTDG 441

Query: 307 DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 366
            L  TL +HKGPIF+LKWNK G+Y+L+   DKT I+WD  T +  QQF FHS P LDVDW
Sbjct: 442 RLASTLGQHKGPIFALKWNKCGNYILSAGVDKTTIIWDASTGQCTQQFAFHSAPALDVDW 501

Query: 367 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW 426
           + N +FA+ STD  I+VC++G N PIKTF GH  EVN +KW P G LLASCSDD+T KIW
Sbjct: 502 QTNQAFASCSTDQRIHVCRLGVNEPIKTFKGHTNEVNAIKWCPQGQLLASCSDDMTLKIW 561

Query: 427 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY 486
           +M +D+  HDL+ HSKEIYTI+WSPTG GTNNPN  LILASASFDSTV+LWDVE G  ++
Sbjct: 562 SMNRDRCCHDLQAHSKEIYTIKWSPTGPGTNNPNTNLILASASFDSTVRLWDVERGSCIH 621

Query: 487 SLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGD 546
           +L  H EPVYS+AFSP G++LASGS DK +HIWS + G++V +Y G GGIFEVCWN +G 
Sbjct: 622 TLTKHTEPVYSVAFSPDGKHLASGSFDKCVHIWSTQTGQLVHSYKGTGGIFEVCWNSKGT 681

Query: 547 KIAACFANHTVCVLDFR 563
           K+ A  ++ +V VLD R
Sbjct: 682 KVGASASDGSVFVLDLR 698

F-box-like component of E3 ubiquitin ligase complexes; involved in R7 photoreceptor cell differentiation, cone cell development and neuronal cell cycle control. E3 ubiquitin ligase complexes mediate ubiquitination and subsequent proteasomal degradation of target proteins. Required for specification of R7 photoreceptor cell fate in the eye by participating in the ubiquitination and subsequent proteasomal degradation of Tramtrack (ttk), a general inhibitor of photoreceptor differentiation. Required to block the S phase entry in the peripheral nervous system and central nervous system in a process that does not involve the degradation of ttk. Involved in cone cell development by preventing the transcriptional repression mediated by Su(H) on Dl, probably by participating in a E3 complex that contains sno and mediates the ubiquitination and subsequent proteasomal degradation of some component of the Su(H) repressor complex.

Drosophila melanogaster (taxid: 7227)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score =  184 bits (466), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 117/361 (32%), Positives = 193/361 (53%), Gaps = 41/361 (11%)

Query: 212  LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 271
            L+GHT+ V A A+SP G+ LASGSGD T R+W I+                 L  ++G T
Sbjct: 1154 LQGHTNWVNAVAFSPDGATLASGSGDQTVRLWDISSSK-------------CLYILQGHT 1200

Query: 272  NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDY 330
            +     V ++ +N +G+ LA+GS D   R+W  N     CT   H   + S+ +N  G  
Sbjct: 1201 SW----VNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVVFNPDGSM 1256

Query: 331  LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF-------ATSSTDNMIYV 383
            L +GS DKT  +WD+ + +    F+ H+      +W N+V+F       A+ S D  + +
Sbjct: 1257 LASGSSDKTVRLWDISSSKCLHTFQGHT------NWVNSVAFNPDGSMLASGSGDQTVRL 1310

Query: 384  CKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE 443
             +I  ++ + TF GH   V+ V + P G++LAS SDD T ++W++   + ++    H+  
Sbjct: 1311 WEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISSGECLYTFLGHTNW 1370

Query: 444  IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPT 503
            + ++ +SP G+         ILAS S D TV+LW +  GK LY+L GH   V S+ FSP 
Sbjct: 1371 VGSVIFSPDGA---------ILASGSGDQTVRLWSISSGKCLYTLQGHNNWVGSIVFSPD 1421

Query: 504  GEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDF 562
            G  LASGS D+++ +W++  G+ + T  G+   +  V ++ +G  +A+   + T+ + D 
Sbjct: 1422 GTLLASGSDDQTVRLWNISSGECLYTLHGHINSVRSVAFSSDGLILASGSDDETIKLWDV 1481

Query: 563  R 563
            +
Sbjct: 1482 K 1482

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	564
449448282	594	PREDICTED: F-box-like/WD repeat-containi	0.989	0.939	0.775	0.0
356511919	560	PREDICTED: F-box-like/WD repeat-containi	0.989	0.996	0.782	0.0
225438892	590	PREDICTED: F-box-like/WD repeat-containi	0.989	0.945	0.761	0.0
255567933	582	Polyadenylation factor subunit, putative	0.998	0.967	0.778	0.0
356563556	614	PREDICTED: F-box-like/WD repeat-containi	0.992	0.912	0.721	0.0
356511917	607	PREDICTED: F-box-like/WD repeat-containi	0.992	0.922	0.726	0.0
224115052	532	predicted protein [Populus trichocarpa]	0.943	1.0	0.771	0.0
356541727	558	PREDICTED: F-box-like/WD repeat-containi	0.989	1.0	0.755	0.0
224081793	517	predicted protein [Populus trichocarpa]	0.916	1.0	0.753	0.0
15240710	613	WD-40 repeat family protein [Arabidopsis	0.996	0.916	0.681	0.0

>gi|449448282|ref|XP_004141895.1| PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1-like [Cucumis sativus] gi|449513123|ref|XP_004164237.1| PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1-like [Cucumis sativus]

 Score =  921 bits (2380), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/600 (77%), Positives = 515/600 (85%), Gaps = 42/600 (7%)

Query: 1   MSSITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQY 60
           M+SITS ELNYLVFRYLQESG +HSAF LGYEAGINKC+IDGNLVPP AL+T VQKGLQY
Sbjct: 1   MTSITSVELNYLVFRYLQESGFIHSAFALGYEAGINKCSIDGNLVPPGALVTVVQKGLQY 60

Query: 61  LEMEANLTCQSDVDMDEDFSFLQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGH 120
           LEMEANL+  +D D+DEDFSFLQP+DLITKDV ELRQ++K+K+K+L  D++K+ D+D+  
Sbjct: 61  LEMEANLS-NNDTDIDEDFSFLQPLDLITKDVHELRQIIKDKRKSLVKDKEKDKDLDKEL 119

Query: 121 EIEHGRVKEKERLDREKER------------------------------------ERDKE 144
           E E GRV+EKER + E ER                                    E+D++
Sbjct: 120 ESERGRVREKERRESEVERGRAREKERLEREKERVEREKERLEREKERLEREKEHEKDRD 179

Query: 145 RVENEKEPEKQHESHPDKEMLTVQEEKVNSKPEENGVLQGEKGPEPMDIATTSASESFEI 204
           ++E +KE EKQHE+  D++M+  Q+EKV++   ENGV       EPMDI+TTS S+S EI
Sbjct: 180 KIEKDKEREKQHENFTDRDMVMDQDEKVHANQGENGVFG-----EPMDISTTSTSQSCEI 234

Query: 205 PNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVL 264
            +SDVTIL+GHTSEVCACAW+P GSLLASGSGDSTARIW IADG+S  G Q+GPLNVLVL
Sbjct: 235 SSSDVTILQGHTSEVCACAWNPTGSLLASGSGDSTARIWPIADGSSRSGGQSGPLNVLVL 294

Query: 265 KHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKW 324
           KHVKGRTNEKSKDVTTLDWNG+GTLLATGSYDGQARIWSTNG+L+ TLSKHKGPIFSLKW
Sbjct: 295 KHVKGRTNEKSKDVTTLDWNGDGTLLATGSYDGQARIWSTNGELRSTLSKHKGPIFSLKW 354

Query: 325 NKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVC 384
           NKKGDYLLTGSCDKTAIVWDVK EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVC
Sbjct: 355 NKKGDYLLTGSCDKTAIVWDVKAEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVC 414

Query: 385 KIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEI 444
           KIGE RPIKTFAGHQGEVNCVKWDPTGSLLASCSDD+TAKIW+MKQDKYV+DLREHSKEI
Sbjct: 415 KIGETRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDITAKIWSMKQDKYVYDLREHSKEI 474

Query: 445 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG 504
           YTIRWSPTG GTNNPNQQL+LASASFDSTVKLWDVELGKL+ SLNGHREPVYS+AFSP G
Sbjct: 475 YTIRWSPTGPGTNNPNQQLVLASASFDSTVKLWDVELGKLICSLNGHREPVYSVAFSPNG 534

Query: 505 EYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFRM 564
           EYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN+TVCVLDFRM
Sbjct: 535 EYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANNTVCVLDFRM 594

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511919|ref|XP_003524669.1| PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1-like isoform 2 [Glycine max]

 Score =  910 bits (2353), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/566 (78%), Positives = 499/566 (88%), Gaps = 8/566 (1%)

Query: 1   MSSITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQY 60
           M+SI+S ELNYLV+RYLQESG  H+AF  GYEAGINKC+IDGNLVP  AL+TFVQKGLQY
Sbjct: 1   MASISSAELNYLVYRYLQESGFTHAAFTFGYEAGINKCSIDGNLVPSGALVTFVQKGLQY 60

Query: 61  LEMEANLTCQSDVDMDEDFSFLQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGH 120
            EMEANL+   D D++EDFSFLQP+DLITKDV ELRQM+ E++K L  +R KE + +   
Sbjct: 61  FEMEANLS-NCDADLEEDFSFLQPLDLITKDVHELRQMISERRKKLQKERKKEFEKEH-- 117

Query: 121 EIEHGRVKEKERLDREKERE--RDKERVENEKEPEKQHESHPDKEMLTVQEEKVNSKPEE 178
           E E  RV+EK+R +REKE+E  +D++++EN+KE E+QH     +EM    E++V  K EE
Sbjct: 118 EGERVRVREKDRREREKEKEVVKDRKKIENDKEREQQHGDQTVREMFVDHEDRVPVKLEE 177

Query: 179 NGVLQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDS 238
           NG +    GPEPMDI+TTS S+   IP+SDVTILEGHTSEVCACAWSP GSLLASGSGDS
Sbjct: 178 NGAV---GGPEPMDISTTSTSQLCGIPSSDVTILEGHTSEVCACAWSPTGSLLASGSGDS 234

Query: 239 TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQ 298
           TARIWTIA+G    G++NGPLNVLVLKHV+G+TNEKSKDVTTLDWNGEGTLLATGSYDGQ
Sbjct: 235 TARIWTIAEGRCKPGSENGPLNVLVLKHVRGKTNEKSKDVTTLDWNGEGTLLATGSYDGQ 294

Query: 299 ARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS 358
           ARIW+TNG+LK TLSKHKGPIFSLKWNKKGDYLLTGSCD+TAIVWDVK EEWKQQFEFHS
Sbjct: 295 ARIWTTNGELKSTLSKHKGPIFSLKWNKKGDYLLTGSCDQTAIVWDVKAEEWKQQFEFHS 354

Query: 359 GPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS 418
           GPTLDVDWRNNVSFATSSTDNMI+VCKIGE  PIKTF GHQGEVNCVKWDPTGSLLASCS
Sbjct: 355 GPTLDVDWRNNVSFATSSTDNMIHVCKIGETHPIKTFTGHQGEVNCVKWDPTGSLLASCS 414

Query: 419 DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWD 478
           DD+TAKIW+MKQD Y+HDLREHSKEIYTIRWSPTG GTNNPN +L+LASASFDSTVKLWD
Sbjct: 415 DDITAKIWSMKQDTYLHDLREHSKEIYTIRWSPTGPGTNNPNHKLVLASASFDSTVKLWD 474

Query: 479 VELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFE 538
           VELGKL+YSL+GHR PVYS+AFSP G+YL SGSLD+SMHIWSL++GKIVKTYTGNGGIFE
Sbjct: 475 VELGKLIYSLDGHRHPVYSVAFSPNGDYLVSGSLDRSMHIWSLRDGKIVKTYTGNGGIFE 534

Query: 539 VCWNKEGDKIAACFANHTVCVLDFRM 564
           VCWNKEGDKIAACFAN+TVCVLDFRM
Sbjct: 535 VCWNKEGDKIAACFANNTVCVLDFRM 560

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438892|ref|XP_002283852.1| PREDICTED: F-box-like/WD repeat-containing protein TBL1X-like isoform 1 [Vitis vinifera]

 Score =  906 bits (2342), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/596 (76%), Positives = 506/596 (84%), Gaps = 38/596 (6%)

Query: 1   MSSITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQY 60
           MSSITS ELNYLVFRYL ESG  HSAF LGYEAGINKC IDGN+VPP ALITFVQKGLQ+
Sbjct: 1   MSSITSAELNYLVFRYLHESGFTHSAFSLGYEAGINKCPIDGNMVPPGALITFVQKGLQF 60

Query: 61  LEMEANLTCQSDVDMDEDFSFLQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGH 120
           +EMEANL+  SD D+D+DFSFLQP+DLITKDV +LRQM++EKK+NL  ++DKE+D  + H
Sbjct: 61  VEMEANLS-NSDTDVDDDFSFLQPLDLITKDVHQLRQMIREKKRNLQKEKDKESD--KEH 117

Query: 121 EIEHGRVKEKERLDREKERERDKERVENEKEPEK-------------------------- 154
           E+   RV+EKERL+R++ +ER +++   E++  +                          
Sbjct: 118 ELVRARVREKERLERQERQERQEKQERQERQEIQERQERQERQERQEKEKEREKEKEREK 177

Query: 155 ------QHESHPDKEMLTVQEEKVNSKPEENGVLQGEKGPEPMDIATTSASESFEIPNSD 208
                 QH+   D EM T QE+ V  K +ENGV     GPEPMDI+T+S  ++ EIP+SD
Sbjct: 178 DKEREKQHDDQIDTEMTTDQEDVVTVKHDENGV---SGGPEPMDISTSSTFQACEIPSSD 234

Query: 209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVK 268
           VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGT     QNGP NVLVLKHVK
Sbjct: 235 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTCRSSVQNGPSNVLVLKHVK 294

Query: 269 GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKG 328
           GRTNEKSKDVTTLDWNG+GTLLATGSYDGQARIWSTNG+L+ TLSKHKGPIFSLKWN+KG
Sbjct: 295 GRTNEKSKDVTTLDWNGDGTLLATGSYDGQARIWSTNGELRSTLSKHKGPIFSLKWNRKG 354

Query: 329 DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE 388
           DYLLTGSCDKTAIVWDVKTEEWKQQFEFH+GPTLDVDWRNNVSFATSSTDNMIYVCKIGE
Sbjct: 355 DYLLTGSCDKTAIVWDVKTEEWKQQFEFHAGPTLDVDWRNNVSFATSSTDNMIYVCKIGE 414

Query: 389 NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR 448
           NRPIKTF+GHQGEVNCVKWDPTG LLASCSDD+TAKIW++KQ+KY+HDLREH+KEIYTIR
Sbjct: 415 NRPIKTFSGHQGEVNCVKWDPTGQLLASCSDDITAKIWSIKQEKYLHDLREHAKEIYTIR 474

Query: 449 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLA 508
           WSPTG GTNNPNQ L+LASASFDSTVKLWDVE GKLL SLNGHR+PVYS+AFSP GEYLA
Sbjct: 475 WSPTGQGTNNPNQPLVLASASFDSTVKLWDVEQGKLLCSLNGHRDPVYSVAFSPNGEYLA 534

Query: 509 SGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFRM 564
           SGSLD+SMHIWSLKE KIVKTYTGNGGIFEVCWNKEGDKIAACFAN+TVCVLDFRM
Sbjct: 535 SGSLDRSMHIWSLKERKIVKTYTGNGGIFEVCWNKEGDKIAACFANNTVCVLDFRM 590

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567933|ref|XP_002524944.1| Polyadenylation factor subunit, putative [Ricinus communis] gi|223535779|gb|EEF37441.1| Polyadenylation factor subunit, putative [Ricinus communis]

 Score =  904 bits (2337), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/583 (77%), Positives = 505/583 (86%), Gaps = 20/583 (3%)

Query: 1   MSSITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQY 60
           M++ITS ELNYLVFRYLQESG  HSAF LGYEAGINKC IDGN+VPP ALITFVQKG+QY
Sbjct: 1   MTTITSSELNYLVFRYLQESGFTHSAFALGYEAGINKCTIDGNMVPPGALITFVQKGIQY 60

Query: 61  LEMEANLTCQSDVDMDEDFSFLQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGH 120
           LEMEANL+  SD D+DEDFSFLQP+DLITKDV ELRQM+K+KKKNL+ DR+KE + D+  
Sbjct: 61  LEMEANLS-NSDADVDEDFSFLQPLDLITKDVYELRQMIKDKKKNLHKDREKEKEKDKNK 119

Query: 121 EIEHGRVKEKERLDREKE--------RERDKERVENEKEPEKQHESHPDKEMLTVQEEKV 172
           + E  R  E+ER    ++         E+D+ERVE +KE EKQHE + D+E +  Q +K 
Sbjct: 120 DKEFEREHERERTRIREKERQEREKESEKDRERVEKDKEREKQHEDNTDRETVADQADKN 179

Query: 173 NSKPE---------ENGVLQ--GEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCA 221
           N K E         EN   +  G  GPEPMD++ TS S++ EIP+SDV ILEGHTSEVCA
Sbjct: 180 NVKHENIKHENVKHENVKHEENGTGGPEPMDVSVTSTSQACEIPSSDVMILEGHTSEVCA 239

Query: 222 CAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTL 281
           CAWSP GSLLASGSGDSTARIW IA+GTS  G QNGPLNVLVLKHVKGRTNEKSKDVTTL
Sbjct: 240 CAWSPTGSLLASGSGDSTARIWAIAEGTSRSGVQNGPLNVLVLKHVKGRTNEKSKDVTTL 299

Query: 282 DWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAI 341
           DWNGEGTLLATGSYDGQARIW+T+G+LK TLSKHKGPIFSLKWNKKGD+LLTGSCDKTAI
Sbjct: 300 DWNGEGTLLATGSYDGQARIWNTSGELKTTLSKHKGPIFSLKWNKKGDFLLTGSCDKTAI 359

Query: 342 VWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGE 401
           VWDVKTEEWKQQFEFHSGP LDVDWRNN SFATSSTDNMIYVC++G+NRP+KTFAGHQGE
Sbjct: 360 VWDVKTEEWKQQFEFHSGPILDVDWRNNTSFATSSTDNMIYVCRVGDNRPVKTFAGHQGE 419

Query: 402 VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQ 461
           VNCVKWDPTGSLLASCSDD++AKIW+MKQDKYVHDLREHSKEIYTIRWSPTG GTNNPNQ
Sbjct: 420 VNCVKWDPTGSLLASCSDDISAKIWSMKQDKYVHDLREHSKEIYTIRWSPTGPGTNNPNQ 479

Query: 462 QLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 521
           QL+LASASFDSTVKLWDVELGKLL +L+GHR+PVYS+AFSP GEYLASGSLD+S++IWSL
Sbjct: 480 QLVLASASFDSTVKLWDVELGKLLCTLSGHRDPVYSVAFSPNGEYLASGSLDRSINIWSL 539

Query: 522 KEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFRM 564
           KE KIVKTYTG GGIFEVCWNKEGDKIAACFAN+TVCVLD RM
Sbjct: 540 KEVKIVKTYTGQGGIFEVCWNKEGDKIAACFANNTVCVLDLRM 582

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563556|ref|XP_003550027.1| PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1-like [Glycine max]

 Score =  903 bits (2333), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/618 (72%), Positives = 504/618 (81%), Gaps = 58/618 (9%)

Query: 1   MSSITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQY 60
           M+SI+S ELNYLV+RYLQESG  H+AF  GYEAGINKC+IDGNLVP  AL+TF+QKGLQY
Sbjct: 1   MASISSAELNYLVYRYLQESGFTHAAFTFGYEAGINKCSIDGNLVPSGALVTFIQKGLQY 60

Query: 61  LEMEANLTCQSDVDMDEDFSFLQPMDLITKDVCELRQMVKEKKKNLNGD----------- 109
            EMEANL+   D D++EDFSFLQP+DLITKDV ELRQM+ E++K L  +           
Sbjct: 61  FEMEANLS-NCDADLEEDFSFLQPLDLITKDVHELRQMISERRKKLQKERKKEFEKEHEG 119

Query: 110 ----------RDKENDVD-----RGHEIEHGRVK-----EKERLDREKERERD------- 142
                     R++E +V+     R  E+E  R +     EK+R +REKE E+D       
Sbjct: 120 ERVRVREKDRREREKEVEKDRRERDKEVEKDRREREKEVEKDRREREKEVEKDRREKEKE 179

Query: 143 ---------------KERVENEKEPEKQHESHPDKEMLTVQEEKVNS-KPEENGVLQGEK 186
                          +E+VEN+KE E+QH     ++M+   E++V   K EENG +    
Sbjct: 180 VEKERRERQKEVVKDREKVENDKEREQQHGDQTVRKMVIDHEDRVPVVKLEENGAV---G 236

Query: 187 GPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIA 246
           GPE MDI+TTS S+ FEIP+SDVTILEGHTSEVCACAWSP GSLLASGSGDSTARIWTIA
Sbjct: 237 GPESMDISTTSTSQLFEIPSSDVTILEGHTSEVCACAWSPTGSLLASGSGDSTARIWTIA 296

Query: 247 DGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG 306
           +G    G+QN PLNVLVLKHV+G+TNEKSKDVTTLDWNGEGTLLATGSYDGQARIW+TNG
Sbjct: 297 EGRCKPGSQNSPLNVLVLKHVRGKTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWTTNG 356

Query: 307 DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 366
           +LK TLSKHKGPIFSLKWNKKGDYLLTGSCD+TAIVWDVK EEWKQQFEFHSGPTLDVDW
Sbjct: 357 ELKSTLSKHKGPIFSLKWNKKGDYLLTGSCDQTAIVWDVKAEEWKQQFEFHSGPTLDVDW 416

Query: 367 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW 426
           RNNVSFATSSTDNMIYVCKIGE RPIKTFAGHQGEVNCVKWDP+GSLLASCSDD+TAKIW
Sbjct: 417 RNNVSFATSSTDNMIYVCKIGETRPIKTFAGHQGEVNCVKWDPSGSLLASCSDDITAKIW 476

Query: 427 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY 486
           +MKQD Y+HDLREHSKEIYTIRWSPTG GTNNPN +L+LASASFDSTVKLWDVELGKL+Y
Sbjct: 477 SMKQDTYLHDLREHSKEIYTIRWSPTGPGTNNPNHKLVLASASFDSTVKLWDVELGKLMY 536

Query: 487 SLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGD 546
           SL+GHR PVYS+AFSP G+YL SGSLD+SMHIWSL++GKIVKTYTGNGGIFEVCWNKEGD
Sbjct: 537 SLDGHRHPVYSVAFSPNGDYLVSGSLDRSMHIWSLRDGKIVKTYTGNGGIFEVCWNKEGD 596

Query: 547 KIAACFANHTVCVLDFRM 564
           KIAACFAN+TVCVLDFRM
Sbjct: 597 KIAACFANNTVCVLDFRM 614

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511917|ref|XP_003524668.1| PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1-like isoform 1 [Glycine max]

 Score =  901 bits (2328), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/611 (72%), Positives = 500/611 (81%), Gaps = 51/611 (8%)

Query: 1   MSSITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQY 60
           M+SI+S ELNYLV+RYLQESG  H+AF  GYEAGINKC+IDGNLVP  AL+TFVQKGLQY
Sbjct: 1   MASISSAELNYLVYRYLQESGFTHAAFTFGYEAGINKCSIDGNLVPSGALVTFVQKGLQY 60

Query: 61  LEMEANLTCQSDVDMDEDFSFLQPMDLITKDVCELRQMVKEKKKNLNGD----------- 109
            EMEANL+   D D++EDFSFLQP+DLITKDV ELRQM+ E++K L  +           
Sbjct: 61  FEMEANLS-NCDADLEEDFSFLQPLDLITKDVHELRQMISERRKKLQKERKKEFEKEHEG 119

Query: 110 ---RDKENDV-----------------------DRGHEIEHGRVK-----EKERLDREKE 138
              R +E D                        +R  E+E  R +     EK+R ++EKE
Sbjct: 120 ERVRVREKDRREREKEVEKERREREKEVEKDRREREKEVEKDRREREKEVEKDRREKEKE 179

Query: 139 -----RERDKERVENEKEPEKQHESHPDKEMLTVQEEKVNSKPEENGVLQGEKGPEPMDI 193
                RE++KE++EN+KE E+QH     +EM    E++V  K EENG +    GPEPMDI
Sbjct: 180 VEKDRREKEKEKIENDKEREQQHGDQTVREMFVDHEDRVPVKLEENGAV---GGPEPMDI 236

Query: 194 ATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGG 253
           +TTS S+   IP+SDVTILEGHTSEVCACAWSP GSLLASGSGDSTARIWTIA+G    G
Sbjct: 237 STTSTSQLCGIPSSDVTILEGHTSEVCACAWSPTGSLLASGSGDSTARIWTIAEGRCKPG 296

Query: 254 AQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLS 313
           ++NGPLNVLVLKHV+G+TNEKSKDVTTLDWNGEGTLLATGSYDGQARIW+TNG+LK TLS
Sbjct: 297 SENGPLNVLVLKHVRGKTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWTTNGELKSTLS 356

Query: 314 KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA 373
           KHKGPIFSLKWNKKGDYLLTGSCD+TAIVWDVK EEWKQQFEFHSGPTLDVDWRNNVSFA
Sbjct: 357 KHKGPIFSLKWNKKGDYLLTGSCDQTAIVWDVKAEEWKQQFEFHSGPTLDVDWRNNVSFA 416

Query: 374 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY 433
           TSSTDNMI+VCKIGE  PIKTF GHQGEVNCVKWDPTGSLLASCSDD+TAKIW+MKQD Y
Sbjct: 417 TSSTDNMIHVCKIGETHPIKTFTGHQGEVNCVKWDPTGSLLASCSDDITAKIWSMKQDTY 476

Query: 434 VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHRE 493
           +HDLREHSKEIYTIRWSPTG GTNNPN +L+LASASFDSTVKLWDVELGKL+YSL+GHR 
Sbjct: 477 LHDLREHSKEIYTIRWSPTGPGTNNPNHKLVLASASFDSTVKLWDVELGKLIYSLDGHRH 536

Query: 494 PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFA 553
           PVYS+AFSP G+YL SGSLD+SMHIWSL++GKIVKTYTGNGGIFEVCWNKEGDKIAACFA
Sbjct: 537 PVYSVAFSPNGDYLVSGSLDRSMHIWSLRDGKIVKTYTGNGGIFEVCWNKEGDKIAACFA 596

Query: 554 NHTVCVLDFRM 564
           N+TVCVLDFRM
Sbjct: 597 NNTVCVLDFRM 607

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115052|ref|XP_002332225.1| predicted protein [Populus trichocarpa] gi|222831838|gb|EEE70315.1| predicted protein [Populus trichocarpa]

 Score =  877 bits (2265), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/564 (77%), Positives = 471/564 (83%), Gaps = 32/564 (5%)

Query: 1   MSSITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQY 60
           M+SITS ELNYLVFRYLQESG  HSAFVLGYEAGINKC IDGN+VPP ALI+FVQKGLQY
Sbjct: 1   MTSITSVELNYLVFRYLQESGFTHSAFVLGYEAGINKCTIDGNMVPPGALISFVQKGLQY 60

Query: 61  LEMEANLTCQSDVDMDEDFSFLQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGH 120
           LEMEANL+  SD D+DEDFSFLQP+DLITKDV ELRQ++KEKKKNL  D  +        
Sbjct: 61  LEMEANLS-NSDADVDEDFSFLQPLDLITKDVNELRQIIKEKKKNLRKDEKRRRRRKTKT 119

Query: 121 EIEHGRVKEKERLDREKERERDKERVENEKEPEKQHESHPDKEMLTVQEEKVNSKPEENG 180
           + +         L + ++ E                         TV+   V   P E G
Sbjct: 120 KTKTKTKIWSSMLSQCRDGEA------------------------TVKSHFVFLFPLEFG 155

Query: 181 VLQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTA 240
                  PEPMDI+T S S++ EIP+SDV ILEGHTSEVCACAWSP GSLLASGSGDSTA
Sbjct: 156 -------PEPMDISTASTSQTCEIPSSDVMILEGHTSEVCACAWSPTGSLLASGSGDSTA 208

Query: 241 RIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQAR 300
           RIWTIA+GTS   AQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQAR
Sbjct: 209 RIWTIAEGTSRSVAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQAR 268

Query: 301 IWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP 360
           IWST+G+LK TLSKHKGPIF+LKWNKKGDYLLTGSCDKTAIVWDV+ EEWKQQFEFHSGP
Sbjct: 269 IWSTDGELKTTLSKHKGPIFTLKWNKKGDYLLTGSCDKTAIVWDVRAEEWKQQFEFHSGP 328

Query: 361 TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD 420
           TLDVDWRNNVSFATSSTDNMIYVCK+GE RPIKTFAGHQGEVNCVKWDPTGS LASCSDD
Sbjct: 329 TLDVDWRNNVSFATSSTDNMIYVCKVGETRPIKTFAGHQGEVNCVKWDPTGSWLASCSDD 388

Query: 421 VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE 480
           ++AKIW+MKQ+KYVHDLREHSKEIYTIRWSPTG GTNNPNQ L+LASASFDSTVKLWDVE
Sbjct: 389 ISAKIWSMKQEKYVHDLREHSKEIYTIRWSPTGPGTNNPNQPLVLASASFDSTVKLWDVE 448

Query: 481 LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVC 540
            GKLL SLNGHREPVYS+AFSP GEYLASGSLD+ ++IWSL+EGKIVKTY GNGGIFEVC
Sbjct: 449 FGKLLCSLNGHREPVYSVAFSPNGEYLASGSLDRCINIWSLREGKIVKTYAGNGGIFEVC 508

Query: 541 WNKEGDKIAACFANHTVCVLDFRM 564
           WNKEGDKIAACFAN+TVCVLDFRM
Sbjct: 509 WNKEGDKIAACFANNTVCVLDFRM 532

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541727|ref|XP_003539325.1| PREDICTED: F-box-like/WD repeat-containing protein ebi-like [Glycine max]

 Score =  868 bits (2242), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/564 (75%), Positives = 477/564 (84%), Gaps = 6/564 (1%)

Query: 1   MSSITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQY 60
           M+S+TS ELN LVFRY QESG  H+AF  G EA INK  IDG L+PP ALIT VQKGLQY
Sbjct: 1   MTSVTSVELNLLVFRYFQESGFTHAAFAFGNEASINKSPIDGKLIPPGALITLVQKGLQY 60

Query: 61  LEMEANLTCQSDVDMDEDFSFLQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGH 120
           LEMEANL+   D D+DEDFSFLQP+DLITKDV ELR+MV E++K L  +R+KE++  + +
Sbjct: 61  LEMEANLS-NCDADLDEDFSFLQPLDLITKDVHELRKMVNERRKILQKNRNKESE--KEN 117

Query: 121 EIEHGRVKEKERLDREKERERDKERVENEKEPEKQHESHPDKEMLTVQEEKVNSKPEENG 180
           E   G +KEK R +REKE ERD E+ EN KE E+QH +   +EM+  QE+ V  K  EN 
Sbjct: 118 EGGRGWLKEKGRHEREKECERDGEKAENLKELEQQHYNQSCREMVIDQEDLVTVKHAENK 177

Query: 181 VLQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTA 240
                 G EPMD++TTS  +  +IP SDV +LEGHTSEVCACAWSP GSLLASGSGDSTA
Sbjct: 178 AF---GGTEPMDVSTTSTLQPCQIPRSDVIVLEGHTSEVCACAWSPTGSLLASGSGDSTA 234

Query: 241 RIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQAR 300
           RIWTIA+G       NGP NVLVLKHV+G+TNEKS DVTTLDWNGEGTLLATGSYDGQAR
Sbjct: 235 RIWTIAEGRCKSALLNGPPNVLVLKHVRGKTNEKSNDVTTLDWNGEGTLLATGSYDGQAR 294

Query: 301 IWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP 360
           IW+TNG+LK TLSKHKGPIFSLKWNKKGDY+LTGSCD+TAIVWDVK EEWKQQFEFHSG 
Sbjct: 295 IWTTNGELKSTLSKHKGPIFSLKWNKKGDYILTGSCDQTAIVWDVKAEEWKQQFEFHSGW 354

Query: 361 TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD 420
           TLDVDWRNNVSFATSSTD  I+VCKIGEN PI+TF GHQ EVNC+KWDPTGSLLASCSDD
Sbjct: 355 TLDVDWRNNVSFATSSTDTKIHVCKIGENLPIRTFVGHQSEVNCIKWDPTGSLLASCSDD 414

Query: 421 VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE 480
           +TAKIW+MKQDKY+H+ REHSKEIYTIRWSPTG GTNNPN+ L+LASASFDSTVKLWDVE
Sbjct: 415 MTAKIWSMKQDKYLHEFREHSKEIYTIRWSPTGPGTNNPNKNLVLASASFDSTVKLWDVE 474

Query: 481 LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVC 540
           LGKLLYSLNGHR+ VYS+AFSP GEY+ASGS D+SM IWSLKEGKIVKTYTG+GGIFEVC
Sbjct: 475 LGKLLYSLNGHRDRVYSVAFSPNGEYIASGSPDRSMLIWSLKEGKIVKTYTGDGGIFEVC 534

Query: 541 WNKEGDKIAACFANHTVCVLDFRM 564
           WNKEGDKIAACFAN+TVCVLDFRM
Sbjct: 535 WNKEGDKIAACFANNTVCVLDFRM 558

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081793|ref|XP_002306492.1| predicted protein [Populus trichocarpa] gi|222855941|gb|EEE93488.1| predicted protein [Populus trichocarpa]

 Score =  858 bits (2216), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/564 (75%), Positives = 460/564 (81%), Gaps = 47/564 (8%)

Query: 1   MSSITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQY 60
           M+SITS ELNYLVFRYLQESG  HSAF LGYE GINKC IDGN++PP ALITFVQKGLQY
Sbjct: 1   MTSITSVELNYLVFRYLQESGFTHSAFALGYEGGINKCTIDGNMIPPGALITFVQKGLQY 60

Query: 61  LEMEANLTCQSDVDMDEDFSFLQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGH 120
           LEMEANL+  SD D+DEDFSFLQP+DLITKDV EL Q + ++KK       ++       
Sbjct: 61  LEMEANLS-NSDADVDEDFSFLQPLDLITKDVNEL-QQIIKEKKKNLHKDREKEKEKEKD 118

Query: 121 EIEHGRVKEKERLDREKERERDKERVENEKEPEKQHESHPDKEMLTVQEEKVNSKPEENG 180
           +       + +  +RE ERE                                        
Sbjct: 119 KDRDKDKDKDKEFEREHEREL--------------------------------------- 139

Query: 181 VLQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTA 240
                 GPEPMDI+ TS S++ EIP+SDV ILEGHTSEVCACAWSP G LLASGSGDSTA
Sbjct: 140 ------GPEPMDISITSTSQTCEIPSSDVMILEGHTSEVCACAWSPIGQLLASGSGDSTA 193

Query: 241 RIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQAR 300
           RIWTI +GTS  G QN PLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQAR
Sbjct: 194 RIWTITEGTSRSGVQNDPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQAR 253

Query: 301 IWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP 360
           IWST+G+LK TLSKHKGPIF+LKWNKKGDYLLTGSCDKTAIVWDV+ EEWKQQFEFHSGP
Sbjct: 254 IWSTDGELKTTLSKHKGPIFTLKWNKKGDYLLTGSCDKTAIVWDVRAEEWKQQFEFHSGP 313

Query: 361 TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD 420
           TLDVDWRNNVSFATSSTDNMIYVCK+GE RPIK+FAGHQGEVNCVKWDPTGSLLASCSDD
Sbjct: 314 TLDVDWRNNVSFATSSTDNMIYVCKVGETRPIKSFAGHQGEVNCVKWDPTGSLLASCSDD 373

Query: 421 VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE 480
           ++AKIW+MKQDKYVHDLREHSKEIYTIRWSPTG GTNNPNQQL+LASASFDSTVKLWDVE
Sbjct: 374 ISAKIWSMKQDKYVHDLREHSKEIYTIRWSPTGPGTNNPNQQLVLASASFDSTVKLWDVE 433

Query: 481 LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVC 540
            GKLL SLNGHREPVYS+AFSP GEYLASGSLD+ ++IWSLKEGKIVKTYTGNGGIFEVC
Sbjct: 434 FGKLLSSLNGHREPVYSVAFSPNGEYLASGSLDRCINIWSLKEGKIVKTYTGNGGIFEVC 493

Query: 541 WNKEGDKIAACFANHTVCVLDFRM 564
           WNKEGDKIAACFAN+TVCVLDFRM
Sbjct: 494 WNKEGDKIAACFANNTVCVLDFRM 517

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240710|ref|NP_201533.1| WD-40 repeat family protein [Arabidopsis thaliana] gi|9758431|dbj|BAB09017.1| unnamed protein product [Arabidopsis thaliana] gi|16323188|gb|AAL15328.1| AT5g67320/K8K14_4 [Arabidopsis thaliana] gi|23506023|gb|AAN28871.1| At5g67320/K8K14_4 [Arabidopsis thaliana] gi|332010945|gb|AED98328.1| WD-40 repeat family protein [Arabidopsis thaliana]

 Score =  824 bits (2129), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/615 (68%), Positives = 481/615 (78%), Gaps = 53/615 (8%)

Query: 1   MSSITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQY 60
           MSS+TS ELN+LVFRYLQESG  H+AF LGYEAGINK NIDGN+VPP ALI FVQKGLQY
Sbjct: 1   MSSLTSVELNFLVFRYLQESGFTHAAFTLGYEAGINKSNIDGNMVPPGALIKFVQKGLQY 60

Query: 61  LEMEANLTCQSDVDMDEDFSFLQPMDLITKDVCELRQMVKEKKKNLNG-----DRDKEND 115
           +EMEANL+  S+VD+DEDFSF QP+DLI+KDV EL+ M++EKK+         DR KEND
Sbjct: 61  MEMEANLS-NSEVDIDEDFSFFQPLDLISKDVKELQDMLREKKRKERDMEKERDRSKEND 119

Query: 116 --VDRGHEIEHGRVKEKERLDREK------------------------------------ 137
             V+R HE +  R KEK+R +++K                                    
Sbjct: 120 KGVEREHEGDRNRAKEKDRHEKQKEREREREKLEREKEREREKIEREKEREREKMEREIF 179

Query: 138 ERERDKERVENEKEPEKQHE--------SHPDKEMLTVQEEKVNSKPEENGVLQGEKGPE 189
           ERE+D+ ++E E+E E++ E        SH +K++     E V  + ++     G  G E
Sbjct: 180 EREKDRLKLEKEREIEREREREKIEREKSH-EKQLGDADREMVIDQTDKEIAGDGSTGAE 238

Query: 190 PMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGT 249
           PMDI  T  S++  IPNSDV ILEGHTSEVCACAWSP+ SLLASGSGD+TARIW+I +G+
Sbjct: 239 PMDIVMTPTSQTSHIPNSDVRILEGHTSEVCACAWSPSASLLASGSGDATARIWSIPEGS 298

Query: 250 SNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLK 309
                    +N L+LKH KG++NEKSKDVTTLDWNGEGTLLATGS DGQARIW+ NG+L 
Sbjct: 299 FKAVHTGRNINALILKHAKGKSNEKSKDVTTLDWNGEGTLLATGSCDGQARIWTLNGELI 358

Query: 310 CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN 369
            TLSKHKGPIFSLKWNKKGDYLLTGS D+TA+VWDVK EEWKQQFEFHSGPTLDVDWRNN
Sbjct: 359 STLSKHKGPIFSLKWNKKGDYLLTGSVDRTAVVWDVKAEEWKQQFEFHSGPTLDVDWRNN 418

Query: 370 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK 429
           VSFATSSTD+MIY+CKIGE RP KTF GHQGEVNCVKWDPTGSLLASCSDD TAKIWN+K
Sbjct: 419 VSFATSSTDSMIYLCKIGETRPAKTFTGHQGEVNCVKWDPTGSLLASCSDDSTAKIWNIK 478

Query: 430 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN 489
           Q  +VHDLREH+KEIYTIRWSPTG GTNNPN+QL LASASFDSTVKLWD ELGK+L S N
Sbjct: 479 QSTFVHDLREHTKEIYTIRWSPTGPGTNNPNKQLTLASASFDSTVKLWDAELGKMLCSFN 538

Query: 490 GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIA 549
           GHREPVYSLAFSP GEY+ASGSLDKS+HIWS+KEGKIVKTYTGNGGIFEVCWNKEG+KIA
Sbjct: 539 GHREPVYSLAFSPNGEYIASGSLDKSIHIWSIKEGKIVKTYTGNGGIFEVCWNKEGNKIA 598

Query: 550 ACFANHTVCVLDFRM 564
           ACFA+++VCVLDFRM
Sbjct: 599 ACFADNSVCVLDFRM 613

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	564
TAIR|locus:2158232	613	HOS15 "high expression of osmo	0.718	0.660	0.756	2.1e-173
UNIPROTKB|B7TCI5	528	TBL1X "Transducin beta-like 1"	0.677	0.723	0.577	7.7e-146
MGI|MGI:1336172	527	Tbl1x "transducin (beta)-like	0.677	0.724	0.575	1.3e-145
RGD|1563868	527	Tbl1x "transducin (beta)-like	0.677	0.724	0.575	1.3e-145
UNIPROTKB|E1BV27	523	TBL1X "Uncharacterized protein	0.677	0.730	0.567	2e-145
MGI|MGI:2441730	514	Tbl1xr1 "transducin (beta)-lik	0.629	0.690	0.598	3.8e-144
UNIPROTKB|C3UJQ7	524	TBL1Y "Transducin (Beta)-like	0.680	0.732	0.567	3.8e-144
UNIPROTKB|Q9BZK7	514	TBL1XR1 "F-box-like/WD repeat-	0.629	0.690	0.598	4.8e-144
RGD|1560053	514	Tbl1xr1 "transducin (beta)-lik	0.629	0.690	0.598	7.8e-144
ZFIN|ZDB-GENE-040426-1192	511	tbl1xr1 "transducin (beta)-lik	0.629	0.694	0.597	1.6e-143

TAIR|locus:2158232 HOS15 "high expression of osmotically responsive genes 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 1685 (598.2 bits), Expect = 2.1e-173, P = 2.1e-173
 Identities = 314/415 (75%), Positives = 345/415 (83%)

Query:   153 EKQHESH---PDKEMLTVQEEKVNSKPEENGVLQGEKGPEPMDIATTSASESFEIPNSDV 209
             EK HE      D+EM+  Q +K     E  G   G  G EPMDI  T  S++  IPNSDV
Sbjct:   206 EKSHEKQLGDADREMVIDQTDK-----EIAG--DGSTGAEPMDIVMTPTSQTSHIPNSDV 258

Query:   210 TILEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKG 269
              ILEGHTSEVCACAWSP          D+TARIW+I +G+         +N L+LKH KG
Sbjct:   259 RILEGHTSEVCACAWSPSASLLASGSGDATARIWSIPEGSFKAVHTGRNINALILKHAKG 318

Query:   270 RTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGD 329
             ++NEKSKDVTTLDWNGEGTLLATGS DGQARIW+ NG+L  TLSKHKGPIFSLKWNKKGD
Sbjct:   319 KSNEKSKDVTTLDWNGEGTLLATGSCDGQARIWTLNGELISTLSKHKGPIFSLKWNKKGD 378

Query:   330 YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGEN 389
             YLLTGS D+TA+VWDVK EEWKQQFEFHSGPTLDVDWRNNVSFATSSTD+MIY+CKIGE 
Sbjct:   379 YLLTGSVDRTAVVWDVKAEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDSMIYLCKIGET 438

Query:   390 RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW 449
             RP KTF GHQGEVNCVKWDPTGSLLASCSDD TAKIWN+KQ  +VHDLREH+KEIYTIRW
Sbjct:   439 RPAKTFTGHQGEVNCVKWDPTGSLLASCSDDSTAKIWNIKQSTFVHDLREHTKEIYTIRW 498

Query:   450 SPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS 509
             SPTG GTNNPN+QL LASASFDSTVKLWD ELGK+L S NGHREPVYSLAFSP GEY+AS
Sbjct:   499 SPTGPGTNNPNKQLTLASASFDSTVKLWDAELGKMLCSFNGHREPVYSLAFSPNGEYIAS 558

Query:   510 GSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFRM 564
             GSLDKS+HIWS+KEGKIVKTYTGNGGIFEVCWNKEG+KIAACFA+++VCVLDFRM
Sbjct:   559 GSLDKSIHIWSIKEGKIVKTYTGNGGIFEVCWNKEGNKIAACFADNSVCVLDFRM 613

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0009409 "response to cold" evidence=IMP

GO:0016575 "histone deacetylation" evidence=IMP

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0016571 "histone methylation" evidence=RCA

GO:0016572 "histone phosphorylation" evidence=RCA

GO:0016579 "protein deubiquitination" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

UNIPROTKB|B7TCI5 TBL1X "Transducin beta-like 1" [Bos taurus (taxid:9913)]

 Score = 1215 (432.8 bits), Expect = 7.7e-146, Sum P(2) = 7.7e-146
 Identities = 230/398 (57%), Positives = 284/398 (71%)

Query:   169 EEKVNSKPEENGVLQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPXX 228
             E  VN   EENG        +PM+I         EIP S  T+L GH SEV  CAW+P  
Sbjct:   143 EATVNG--EENGAHAINNHSKPMEI-----DGDVEIPPSKATVLRGHESEVFICAWNPVS 195

Query:   229 XXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKH-VK--GRTNEKSKDVTTLDWNG 285
                     DSTARIW + +  SNGG+       LVL+H ++  G     +KDVT+LDWN 
Sbjct:   196 DLLASGSGDSTARIWNLNEN-SNGGSTQ-----LVLRHCIREGGHDVPSNKDVTSLDWNS 249

Query:   286 EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV 345
             +GTLLATGSYDG ARIW+ +G+L  TL +HKGPIF+LKWNKKG+Y+L+   DKT I+WD 
Sbjct:   250 DGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDA 309

Query:   346 KTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCV 405
              T E KQQF FHS P LDVDW+NN +FA+ STD  I+VC++G +RP+KTF GH  EVN +
Sbjct:   310 HTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAI 369

Query:   406 KWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLIL 465
             KWDP+G LLASCSDD+T KIW+MKQD  VHDL+ HSKEIYTI+WSPTG  T+NPN  ++L
Sbjct:   370 KWDPSGMLLASCSDDMTLKIWSMKQDTCVHDLQAHSKEIYTIKWSPTGPATSNPNSSIML 429

Query:   466 ASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK 525
             ASASFDSTV+LWDVE G  L++L  H+EPVYS+AFSP G+YLASGS DK +HIW+ + G 
Sbjct:   430 ASASFDSTVRLWDVERGVCLHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGS 489

Query:   526 IVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 563
             +V +Y G GGIFEVCWN  GDK+ A  ++ +VCVLD R
Sbjct:   490 LVHSYRGTGGIFEVCWNARGDKVGASASDGSVCVLDLR 527

GO:0006508 "proteolysis" evidence=ISS

GO:0007605 "sensory perception of sound" evidence=ISS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0003714 "transcription corepressor activity" evidence=ISS

GO:0008013 "beta-catenin binding" evidence=ISS

GO:0042393 "histone binding" evidence=ISS

GO:0005876 "spindle microtubule" evidence=ISS

GO:0017053 "transcriptional repressor complex" evidence=ISS

GO:0045444 "fat cell differentiation" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0043627 "response to estrogen stimulus" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

MGI|MGI:1336172 Tbl1x "transducin (beta)-like 1 X-linked" [Mus musculus (taxid:10090)]

 Score = 1213 (432.1 bits), Expect = 1.3e-145, Sum P(2) = 1.3e-145
 Identities = 229/398 (57%), Positives = 284/398 (71%)

Query:   169 EEKVNSKPEENGVLQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPXX 228
             E  VN   EENG        +PM+I         EIP S  T+L GH SEV  CAW+P  
Sbjct:   142 EATVNG--EENGAHAINNHSKPMEI-----DGDVEIPPSKATVLRGHESEVFICAWNPVS 194

Query:   229 XXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKH-VK--GRTNEKSKDVTTLDWNG 285
                     DSTARIW + +  SNGG+       LVL+H ++  G     +KDVT+LDWN 
Sbjct:   195 DLLASGSGDSTARIWNLNEN-SNGGSTQ-----LVLRHCIREGGHDVPSNKDVTSLDWNS 248

Query:   286 EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV 345
             +GTLLATGSYDG ARIW+ +G+L  TL +HKGPIF+LKWNKKG+Y+L+   DKT I+WD 
Sbjct:   249 DGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDA 308

Query:   346 KTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCV 405
              T E KQQF FHS P LDVDW+NN +FA+ STD  I+VC++G +RP+KTF GH  EVN +
Sbjct:   309 HTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAI 368

Query:   406 KWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLIL 465
             KWDP+G LLASCSDD+T KIW+MKQD  VHDL+ HSKEIYTI+WSPTG  T+NPN  ++L
Sbjct:   369 KWDPSGMLLASCSDDMTLKIWSMKQDACVHDLQAHSKEIYTIKWSPTGPATSNPNSNIML 428

Query:   466 ASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK 525
             ASASFDSTV+LWDVE G  +++L  H+EPVYS+AFSP G+YLASGS DK +HIW+ + G 
Sbjct:   429 ASASFDSTVRLWDVERGVCIHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGS 488

Query:   526 IVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 563
             +V +Y G GGIFEVCWN  GDK+ A  ++ +VCVLD R
Sbjct:   489 LVHSYRGTGGIFEVCWNARGDKVGASASDGSVCVLDLR 526

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0003677 "DNA binding" evidence=IDA

GO:0003682 "chromatin binding" evidence=IDA

GO:0003714 "transcription corepressor activity" evidence=ISO;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO

GO:0005667 "transcription factor complex" evidence=IDA

GO:0005876 "spindle microtubule" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IGI

GO:0006508 "proteolysis" evidence=ISO

GO:0007605 "sensory perception of sound" evidence=ISO

GO:0008013 "beta-catenin binding" evidence=ISO

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0008134 "transcription factor binding" evidence=ISO

GO:0017053 "transcriptional repressor complex" evidence=ISO

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0042393 "histone binding" evidence=ISO

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IMP

GO:0043627 "response to estrogen stimulus" evidence=IMP

GO:0044212 "transcription regulatory region DNA binding" evidence=ISO;IDA

GO:0045444 "fat cell differentiation" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO;IMP

GO:0048545 "response to steroid hormone stimulus" evidence=IMP

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=ISO

RGD|1563868 Tbl1x "transducin (beta)-like 1 X-linked" [Rattus norvegicus (taxid:10116)]

 Score = 1213 (432.1 bits), Expect = 1.3e-145, Sum P(2) = 1.3e-145
 Identities = 229/398 (57%), Positives = 284/398 (71%)

Query:   169 EEKVNSKPEENGVLQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPXX 228
             E  VN   EENG        +PM+I         EIP S  T+L GH SEV  CAW+P  
Sbjct:   142 EATVNG--EENGAHAINNHSKPMEI-----DGDVEIPPSKATVLRGHESEVFICAWNPVS 194

Query:   229 XXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKH-VK--GRTNEKSKDVTTLDWNG 285
                     DSTARIW + +  SNGG+       LVL+H ++  G     +KDVT+LDWN 
Sbjct:   195 DLLASGSGDSTARIWNLNEN-SNGGSTQ-----LVLRHCIREGGHDVPSNKDVTSLDWNS 248

Query:   286 EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV 345
             +GTLLATGSYDG ARIW+ +G+L  TL +HKGPIF+LKWNKKG+Y+L+   DKT I+WD 
Sbjct:   249 DGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDA 308

Query:   346 KTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCV 405
              T E KQQF FHS P LDVDW+NN +FA+ STD  I+VC++G +RP+KTF GH  EVN +
Sbjct:   309 HTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAI 368

Query:   406 KWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLIL 465
             KWDP+G LLASCSDD+T KIW+MKQD  VHDL+ HSKEIYTI+WSPTG  T+NPN  ++L
Sbjct:   369 KWDPSGMLLASCSDDMTLKIWSMKQDACVHDLQAHSKEIYTIKWSPTGPATSNPNSNIML 428

Query:   466 ASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK 525
             ASASFDSTV+LWDVE G  +++L  H+EPVYS+AFSP G+YLASGS DK +HIW+ + G 
Sbjct:   429 ASASFDSTVRLWDVERGVCIHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGS 488

Query:   526 IVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 563
             +V +Y G GGIFEVCWN  GDK+ A  ++ +VCVLD R
Sbjct:   489 LVHSYRGTGGIFEVCWNARGDKVGASASDGSVCVLDLR 526

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0003677 "DNA binding" evidence=ISO

GO:0003682 "chromatin binding" evidence=IEA;ISO

GO:0003714 "transcription corepressor activity" evidence=IEA;ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005667 "transcription factor complex" evidence=IEA;ISO

GO:0005876 "spindle microtubule" evidence=ISO

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0006508 "proteolysis" evidence=ISO

GO:0007605 "sensory perception of sound" evidence=ISO

GO:0008013 "beta-catenin binding" evidence=ISO

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0008134 "transcription factor binding" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0017053 "transcriptional repressor complex" evidence=ISO

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0042393 "histone binding" evidence=ISO

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA;ISO

GO:0043627 "response to estrogen stimulus" evidence=IEA;ISO

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA;ISO

GO:0045444 "fat cell differentiation" evidence=IEA;ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA;ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0048545 "response to steroid hormone stimulus" evidence=ISO

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=ISO

GO:0000118 "histone deacetylase complex" evidence=ISO

UNIPROTKB|E1BV27 TBL1X "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1211 (431.4 bits), Expect = 2.0e-145, Sum P(2) = 2.0e-145
 Identities = 226/398 (56%), Positives = 285/398 (71%)

Query:   169 EEKVNSKPEENGVLQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPXX 228
             E  VN   EENG        +PM+I         EIP +  T+L GH SEV  CAW+P  
Sbjct:   138 EATVNG--EENGAHAINNHSKPMEI-----DGDVEIPPNKATVLRGHESEVFICAWNPVS 190

Query:   229 XXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKH-VK--GRTNEKSKDVTTLDWNG 285
                     DSTARIW + + +++G  Q      LVL+H ++  G     +KDVT+LDWN 
Sbjct:   191 DLLASGSGDSTARIWNLNENSNSGSTQ------LVLRHCIREGGHDVPSNKDVTSLDWNS 244

Query:   286 EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV 345
             +GTLLATGSYDG ARIW+ +G+L  TL +HKGPIF+LKWNKKG+Y+L+   DKT I+WD 
Sbjct:   245 DGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDA 304

Query:   346 KTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCV 405
              T E KQQF FHS P LDVDW+NN +FA+ STD  I+VC++G +RP+KTF GH  EVN +
Sbjct:   305 HTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAI 364

Query:   406 KWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLIL 465
             KWDP+G LLASCSDD+T KIW+MKQD  VHDL+ HSKEIYTI+WSPTG GT+NPN  ++L
Sbjct:   365 KWDPSGMLLASCSDDMTLKIWSMKQDTCVHDLQAHSKEIYTIKWSPTGPGTSNPNSNIML 424

Query:   466 ASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK 525
             ASASFDSTV+LWDV+ G  +++L  H+EPVYS+AFSP G+YLASGS DK +HIW+ + G 
Sbjct:   425 ASASFDSTVRLWDVDRGVCIHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGT 484

Query:   526 IVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 563
             +V +Y G GGIFEVCWN  GDK+ A  ++ +VCVLD R
Sbjct:   485 LVHSYRGTGGIFEVCWNARGDKVGASASDGSVCVLDLR 522

GO:0003682 "chromatin binding" evidence=IEA

GO:0003714 "transcription corepressor activity" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0043627 "response to estrogen stimulus" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0045444 "fat cell differentiation" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

MGI|MGI:2441730 Tbl1xr1 "transducin (beta)-like 1X-linked receptor 1" [Mus musculus (taxid:10090)]

 Score = 1206 (429.6 bits), Expect = 3.8e-144, Sum P(2) = 3.8e-144
 Identities = 218/364 (59%), Positives = 276/364 (75%)

Query:   203 EIPNSDVTILEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVL 262
             EIP++   +L GH SEV  CAW+P          DSTARIW +++ +++G  Q      L
Sbjct:   156 EIPSNKAVVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLSENSTSGPTQ------L 209

Query:   263 VLKH-VK--GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPI 319
             VL+H ++  G+    +KDVT+LDWN EGTLLATGSYDG ARIW+ +G+L  TL +HKGPI
Sbjct:   210 VLRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGSYDGFARIWTKDGNLASTLGQHKGPI 269

Query:   320 FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDN 379
             F+LKWNKKG+++L+   DKT I+WD  T E KQQF FHS P LDVDW++N +FA+ STD 
Sbjct:   270 FALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDM 329

Query:   380 MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 439
              I+VCK+G++RPIKTF GH  EVN +KWDPTG+LLASCSDD+T KIW+MKQD  VHDL+ 
Sbjct:   330 CIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHDLQA 389

Query:   440 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLA 499
             H+KEIYTI+WSPTG GTNNPN  L+LASASFDSTV+LWDV+ G  +++L  H+EPVYS+A
Sbjct:   390 HNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDVDRGICIHTLTKHQEPVYSVA 449

Query:   500 FSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCV 559
             FSP G YLASGS DK +HIW+ + G +V +Y G GGIFEVCWN  GDK+ A  ++ +VCV
Sbjct:   450 FSPDGRYLASGSFDKCVHIWNTQTGALVHSYRGTGGIFEVCWNAAGDKVGASASDGSVCV 509

Query:   560 LDFR 563
             LD R
Sbjct:   510 LDLR 513

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0003677 "DNA binding" evidence=IDA

GO:0003714 "transcription corepressor activity" evidence=ISO;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;IC

GO:0005876 "spindle microtubule" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008013 "beta-catenin binding" evidence=ISO

GO:0016568 "chromatin modification" evidence=IEA

GO:0017053 "transcriptional repressor complex" evidence=ISO

GO:0042393 "histone binding" evidence=ISO

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IMP

GO:0044212 "transcription regulatory region DNA binding" evidence=ISO;IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO;IMP

GO:0047485 "protein N-terminus binding" evidence=ISO

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=ISO

UNIPROTKB|C3UJQ7 TBL1Y "Transducin (Beta)-like 1 Y-linked" [Gorilla gorilla (taxid:9593)]

 Score = 1201 (427.8 bits), Expect = 3.8e-144, Sum P(2) = 3.8e-144
 Identities = 227/400 (56%), Positives = 283/400 (70%)

Query:   167 VQEEKVNSKPEENGVLQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSP 226
             ++E  VN   EENG  +     +PM+I         EIP +  T+L GH SEV  CAW+P
Sbjct:   137 IREATVNG--EENGAHEINNHSKPMEI-----DRDVEIPPNKATVLRGHESEVFICAWNP 189

Query:   227 XXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHV--KGRTNEKS-KDVTTLDW 283
                       DSTARIW + +  SNGG+       LVL+H   +G  +  S KDVT+LDW
Sbjct:   190 VSDLLASGSGDSTARIWNLNEN-SNGGSTQ-----LVLRHCIREGWHDVPSNKDVTSLDW 243

Query:   284 NGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVW 343
             N +GTLLA GSYDG ARIW+ NG+L  TL +HKGPIF+LKWNKKG+Y+L+   DKT I+W
Sbjct:   244 NSDGTLLAMGSYDGFARIWTENGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIW 303

Query:   344 DVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVN 403
             D  T E KQQF FHS P LDVDW+NN +FA+  TD  I+VC++G + P+KTF GH  EVN
Sbjct:   304 DAHTGEAKQQFPFHSAPALDVDWQNNTTFASCGTDMCIHVCRLGCDLPVKTFQGHTNEVN 363

Query:   404 CVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQL 463
              +KWDP+G LLASCSDD+T KIW+MKQD  VHDL+ HSKEIYTI+WSPTG  T+NPN  +
Sbjct:   364 AIKWDPSGMLLASCSDDMTLKIWSMKQDACVHDLQAHSKEIYTIKWSPTGPATSNPNSSI 423

Query:   464 ILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE 523
             +LASASFDSTV+LWDVE G   ++L  H+EPVYS+AFSP G+YLASGS DK +HIW+ + 
Sbjct:   424 MLASASFDSTVRLWDVEQGVCTHTLTKHQEPVYSIAFSPDGKYLASGSFDKCVHIWNTQS 483

Query:   524 GKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 563
             G +V +Y G GGIFEVCWN  GDK+ A  ++ +VCVLD R
Sbjct:   484 GSLVHSYQGTGGIFEVCWNARGDKVGASASDGSVCVLDLR 523

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0003714 "transcription corepressor activity" evidence=ISS

GO:0005876 "spindle microtubule" evidence=ISS

GO:0006508 "proteolysis" evidence=ISS

GO:0007605 "sensory perception of sound" evidence=ISS

GO:0008013 "beta-catenin binding" evidence=ISS

GO:0017053 "transcriptional repressor complex" evidence=ISS

GO:0042393 "histone binding" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=ISS

UNIPROTKB|Q9BZK7 TBL1XR1 "F-box-like/WD repeat-containing protein TBL1XR1" [Homo sapiens (taxid:9606)]

 Score = 1205 (429.2 bits), Expect = 4.8e-144, Sum P(2) = 4.8e-144
 Identities = 218/364 (59%), Positives = 275/364 (75%)

Query:   203 EIPNSDVTILEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVL 262
             EIP +   +L GH SEV  CAW+P          DSTARIW +++ +++G  Q      L
Sbjct:   156 EIPPNKAVVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLSENSTSGSTQ------L 209

Query:   263 VLKH-VK--GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPI 319
             VL+H ++  G+    +KDVT+LDWN EGTLLATGSYDG ARIW+ +G+L  TL +HKGPI
Sbjct:   210 VLRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGSYDGFARIWTKDGNLASTLGQHKGPI 269

Query:   320 FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDN 379
             F+LKWNKKG+++L+   DKT I+WD  T E KQQF FHS P LDVDW++N +FA+ STD 
Sbjct:   270 FALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDM 329

Query:   380 MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 439
              I+VCK+G++RPIKTF GH  EVN +KWDPTG+LLASCSDD+T KIW+MKQD  VHDL+ 
Sbjct:   330 CIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHDLQA 389

Query:   440 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLA 499
             H+KEIYTI+WSPTG GTNNPN  L+LASASFDSTV+LWDV+ G  +++L  H+EPVYS+A
Sbjct:   390 HNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDVDRGICIHTLTKHQEPVYSVA 449

Query:   500 FSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCV 559
             FSP G YLASGS DK +HIW+ + G +V +Y G GGIFEVCWN  GDK+ A  ++ +VCV
Sbjct:   450 FSPDGRYLASGSFDKCVHIWNTQTGALVHSYRGTGGIFEVCWNAAGDKVGASASDGSVCV 509

Query:   560 LDFR 563
             LD R
Sbjct:   510 LDLR 513

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=IMP

GO:0003714 "transcription corepressor activity" evidence=IGI;IDA

GO:0042393 "histone binding" evidence=IDA

GO:0017053 "transcriptional repressor complex" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=ISS;IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0008013 "beta-catenin binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0005876 "spindle microtubule" evidence=IDA

GO:0000118 "histone deacetylase complex" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0047485 "protein N-terminus binding" evidence=IPI

GO:0005654 "nucleoplasm" evidence=TAS

GO:0007219 "Notch signaling pathway" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005730 "nucleolus" evidence=IDA

RGD|1560053 Tbl1xr1 "transducin (beta)-like 1 X-linked receptor 1" [Rattus norvegicus (taxid:10116)]

 Score = 1203 (428.5 bits), Expect = 7.8e-144, Sum P(2) = 7.8e-144
 Identities = 218/364 (59%), Positives = 275/364 (75%)

Query:   203 EIPNSDVTILEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVL 262
             EIP +   +L GH SEV  CAW+P          DSTARIW +++ +++G  Q      L
Sbjct:   156 EIPPNKAVVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLSENSTSGPTQ------L 209

Query:   263 VLKH-VK--GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPI 319
             VL+H ++  G+    +KDVT+LDWN EGTLLATGSYDG ARIW+ +G+L  TL +HKGPI
Sbjct:   210 VLRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGSYDGFARIWTKDGNLASTLGQHKGPI 269

Query:   320 FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDN 379
             F+LKWNKKG+++L+   DKT I+WD  T E KQQF FHS P LDVDW++N +FA+ STD 
Sbjct:   270 FALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDM 329

Query:   380 MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 439
              I+VCK+G++RPIKTF GH  EVN +KWDPTG+LLASCSDD+T KIW+MKQD  VHDL+ 
Sbjct:   330 CIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHDLQA 389

Query:   440 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLA 499
             H+KEIYTI+WSPTG GTNNPN  L+LASASFDSTV+LWDV+ G  +++L  H+EPVYS+A
Sbjct:   390 HNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDVDRGICIHTLTKHQEPVYSVA 449

Query:   500 FSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCV 559
             FSP G YLASGS DK +HIW+ + G +V +Y G GGIFEVCWN  GDK+ A  ++ +VCV
Sbjct:   450 FSPDGRYLASGSFDKCVHIWNTQTGALVHSYRGTGGIFEVCWNAAGDKVGASASDGSVCV 509

Query:   560 LDFR 563
             LD R
Sbjct:   510 LDLR 513

GO:0000118 "histone deacetylase complex" evidence=IEA;ISO

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0003674 "molecular_function" evidence=ND

GO:0003677 "DNA binding" evidence=ISO

GO:0003714 "transcription corepressor activity" evidence=IEA;ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005876 "spindle microtubule" evidence=IEA;ISO

GO:0008013 "beta-catenin binding" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0017053 "transcriptional repressor complex" evidence=IEA;ISO

GO:0042393 "histone binding" evidence=IEA;ISO

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA;ISO

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA;ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0047485 "protein N-terminus binding" evidence=IEA;ISO

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

ZFIN|ZDB-GENE-040426-1192 tbl1xr1 "transducin (beta)-like 1 X-linked receptor 1" [Danio rerio (taxid:7955)]

 Score = 1195 (425.7 bits), Expect = 1.6e-143, Sum P(2) = 1.6e-143
 Identities = 218/365 (59%), Positives = 272/365 (74%)

Query:   203 EIPNSDVTILEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVL 262
             EIP S   +L GH SEV  CAW+P          DSTARIW +++ ++ G  Q      L
Sbjct:   152 EIPASKAMVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLSESSTGGSTQ------L 205

Query:   263 VLKH-VK--GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPI 319
             VL+H ++  G+    +KDVT+LDWN EGTLLATGSYDG ARIW+ +G+L  TL +HKGPI
Sbjct:   206 VLRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGSYDGFARIWTKDGNLASTLGQHKGPI 265

Query:   320 FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDN 379
             F+LKWNKKG+++L+   DKT I+WD  T E KQQF FHS P LDVDW++N +FA+ STD 
Sbjct:   266 FALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDM 325

Query:   380 MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 439
              I+VCK+G+ RPIKTF GH  EVN +KWDPTG+LLASCSDD+T K+W+MKQD  VHDL+ 
Sbjct:   326 CIHVCKLGQERPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKLWSMKQDTCVHDLQA 385

Query:   440 HSKEIYTIRWSPTGSGTNNPNQQLILA-SASFDSTVKLWDVELGKLLYSLNGHREPVYSL 498
             HSKEIYTI+WSPTG GTNNPN  L+LA SASFDSTV+LWD E G  +++L  H+EPVYS+
Sbjct:   386 HSKEIYTIKWSPTGPGTNNPNANLMLARSASFDSTVRLWDAERGACIHTLTKHQEPVYSV 445

Query:   499 AFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVC 558
             AFSP G +LASGS DK +HIW+ + G +V +Y G GGIFEVCWN  GDK+ A  ++ +VC
Sbjct:   446 AFSPDGRHLASGSFDKCVHIWNTQSGALVNSYRGTGGIFEVCWNSTGDKVGASASDGSVC 505

Query:   559 VLDFR 563
             VLD R
Sbjct:   506 VLDLR 510

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8BHJ5	TBL1R_MOUSE	No assigned EC number	0.4946	0.9024	0.9902	yes	no
Q9BQ87	TBL1Y_HUMAN	No assigned EC number	0.5008	0.9113	0.9846	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_2050013	hypothetical protein (532 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.XII.1531.1	hypothetical protein (314 aa)			•						0.445
	estExt_fgenesh4_pg.C_LG_VIII0799	SubName- Full=Putative uncharacterized protein; (321 aa)			•						0.430
	estExt_Genewise1_v1.C_LG_X6506	hypothetical protein (370 aa)			•						0.422
	eugene3.00180717	hypothetical protein (345 aa)			•						0.415

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	564
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-82
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-65
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-45
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-37
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	9e-37
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	2e-10
smart00320	40	smart00320, WD40, WD40 repeats	4e-10
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	7e-10
smart00320	40	smart00320, WD40, WD40 repeats	8e-10
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	1e-09
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-09
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	4e-09
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	6e-09
smart00320	40	smart00320, WD40, WD40 repeats	8e-09
smart00320	40	smart00320, WD40, WD40 repeats	2e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-07
smart00320	40	smart00320, WD40, WD40 repeats	2e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-06
pfam08513	27	pfam08513, LisH, LisH	2e-06
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	5e-06
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	5e-06
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	7e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	5e-05
pfam08662	194	pfam08662, eIF2A, Eukaryotic translation initiatio	6e-05
smart00320	40	smart00320, WD40, WD40 repeats	1e-04
smart00667	34	smart00667, LisH, Lissencephaly type-1-like homolo	3e-04
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	4e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  258 bits (661), Expect = 3e-82
 Identities = 107/314 (34%), Positives = 162/314 (51%), Gaps = 28/314 (8%)

Query: 209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVK 268
              L+GHT  V   A+SP G LLA+GSGD T ++W +  G              +L+ +K
Sbjct: 2   RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-------------LLRTLK 48

Query: 269 GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKK 327
           G     +  V  +  + +GT LA+GS D   R+W    G+   TL+ H   + S+ ++  
Sbjct: 49  G----HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPD 104

Query: 328 GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF-ATSSTDNMIYVCKI 386
           G  L + S DKT  VWDV+T +       H+     V +  + +F A+SS D  I +  +
Sbjct: 105 GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDL 164

Query: 387 GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT 446
              + + T  GH GEVN V + P G  L S S D T K+W++   K +  LR H   + +
Sbjct: 165 RTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNS 224

Query: 447 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY 506
           + +SP G          +LAS S D T+++WD+  G+ + +L+GH   V SLA+SP G+ 
Sbjct: 225 VAFSPDG---------YLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKR 275

Query: 507 LASGSLDKSMHIWS 520
           LASGS D ++ IW 
Sbjct: 276 LASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  214 bits (547), Expect = 2e-65
 Identities = 87/258 (33%), Positives = 138/258 (53%), Gaps = 11/258 (4%)

Query: 308 LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW- 366
           L+ TL  H G +  + ++  G  L TGS D T  VWD++T E  +  + H+GP  DV   
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 367 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW 426
            +    A+ S+D  I +  +     ++T  GH   V+ V + P G +L+S S D T K+W
Sbjct: 61  ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120

Query: 427 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY 486
           +++  K +  LR H+  + ++ +SP G+          +AS+S D T+KLWD+  GK + 
Sbjct: 121 DVETGKCLTTLRGHTDWVNSVAFSPDGT---------FVASSSQDGTIKLWDLRTGKCVA 171

Query: 487 SLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEG 545
           +L GH   V S+AFSP GE L S S D ++ +W L  GK + T  G   G+  V ++ +G
Sbjct: 172 TLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDG 231

Query: 546 DKIAACFANHTVCVLDFR 563
             +A+   + T+ V D R
Sbjct: 232 YLLASGSEDGTIRVWDLR 249

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  164 bits (416), Expect = 7e-45
 Identities = 113/393 (28%), Positives = 189/393 (48%), Gaps = 32/393 (8%)

Query: 181 VLQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTA 240
           +L        + +    +     +P+    +L GH   + + A+SP G LL SGS D T 
Sbjct: 30  LLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTI 89

Query: 241 RIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQAR 300
           ++W + +G              ++K ++G  +     +     +G   LLA+ S DG  +
Sbjct: 90  KLWDLDNGEK------------LIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVK 137

Query: 301 IWSTNGDLKC--TLSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQQFEFH 357
           +W  +   K   TL  H   + SL ++  G  L +GS  D T  +WD++T +       H
Sbjct: 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGH 197

Query: 358 SGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIK-TFAGHQGEVNCVKWDPTGSLL 414
           + P   + +     +  A+ S+D  I +  +   + ++ T +GH   V    + P GSLL
Sbjct: 198 TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSLL 256

Query: 415 ASCSDDVTAKIWNMKQDKY-VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDST 473
           AS S D T ++W+++     +  L  HS  + ++ +SP G          +LAS S D T
Sbjct: 257 ASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGK---------LLASGSSDGT 307

Query: 474 VKLWDVELGKLLY--SLNGHREPVYSLAFSPTGEYLASG-SLDKSMHIWSLKEGKIVKTY 530
           V+LWD+E GKLL   +L GH  PV SL+FSP G  L SG S D ++ +W L+ GK +KT 
Sbjct: 308 VRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTL 367

Query: 531 TGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 563
            G+  +  V ++ +G  +++   + TV + D  
Sbjct: 368 EGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLS 400

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  144 bits (363), Expect = 2e-37
 Identities = 90/312 (28%), Positives = 152/312 (48%), Gaps = 23/312 (7%)

Query: 263 VLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSL 322
           +LK  +   +  S  + +L  +  G LL     D    +   +      L  H+  I S+
Sbjct: 15  LLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLS---SLLLRGHEDSITSI 71

Query: 323 KWNKKGDYLLTGSCDKTAIVWDVKTEE--WKQQFEFHSGPTLDVDW----RNNVSFATSS 376
            ++  G+ LL+GS D T  +WD+   E   K     H      +       N++  A+SS
Sbjct: 72  AFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSS 131

Query: 377 TDNMIYVCKI-GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAKIWNMKQDKYV 434
            D  + +  +    + I+T  GH   V  + + P G LLAS S  D T K+W+++  K +
Sbjct: 132 LDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPL 191

Query: 435 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYS-LNGHRE 493
             L  H+  + ++ +SP G         L++AS S D T++LWD+  GKLL S L+GH +
Sbjct: 192 STLAGHTDPVSSLAFSPDG--------GLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD 243

Query: 494 PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI-VKTYTGNGG-IFEVCWNKEGDKIAAC 551
            V S +FSP G  LASGS D ++ +W L+     ++T +G+   +  V ++ +G  +A+ 
Sbjct: 244 SVVS-SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASG 302

Query: 552 FANHTVCVLDFR 563
            ++ TV + D  
Sbjct: 303 SSDGTVRLWDLE 314

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  142 bits (357), Expect = 9e-37
 Identities = 108/331 (32%), Positives = 168/331 (50%), Gaps = 37/331 (11%)

Query: 201 SFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSG-DSTARIWTIADGTSNGGAQNGPL 259
               P   +  LEGH+  V + A+SP G LLASGS  D T ++W +  G           
Sbjct: 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK---------- 189

Query: 260 NVLVLKHVKGRTNEKSKDVTTLDWNGEGT-LLATGSYDGQARIW--STNGDLKCTLSKHK 316
            +  L          +  V++L ++ +G  L+A+GS DG  R+W  ST   L+ TLS H 
Sbjct: 190 PLSTLAG-------HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHS 242

Query: 317 GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE-EWKQQFEFHSGPTLDVDWRNNVS-FAT 374
             + S  ++  G  L +GS D T  +WD+++     +    HS   L V +  +    A+
Sbjct: 243 DSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLAS 301

Query: 375 SSTDNMIYVCKI--GENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVTAKIWNMKQD 431
            S+D  + +  +  G+     T  GH+G V+ + + P GSLL    SDD T ++W+++  
Sbjct: 302 GSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTG 361

Query: 432 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 491
           K +  L  HS  + ++ +SP G          +++S S D TV+LWD+  G LL +L+GH
Sbjct: 362 KPLKTLEGHS-NVLSVSFSPDG---------RVVSSGSTDGTVRLWDLSTGSLLRNLDGH 411

Query: 492 REPVYSLAFSPTGEYLASGSLDKSMHIWSLK 522
              V SL FSP G+ LASGS D ++ +W LK
Sbjct: 412 TSRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442

Length = 466

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 63.4 bits (154), Expect = 2e-10
 Identities = 44/157 (28%), Positives = 79/157 (50%), Gaps = 19/157 (12%)

Query: 389 NRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQD----KYVHD----LRE 439
             P+    GH   +  ++++P  S +LAS S+D+T ++W +  +    K + D    L+ 
Sbjct: 64  KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG 123

Query: 440 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLA 499
           H K+I  I W        NP    I+ S+ FDS V +WD+E  K  + +N  ++ + SL 
Sbjct: 124 HKKKISIIDW--------NPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKK-LSSLK 174

Query: 500 FSPTGEYLASGSLDKSMHIWSLKEGKIVKTY-TGNGG 535
           ++  G  L+   + K MHI   ++ +I  ++   +GG
Sbjct: 175 WNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGG 211

Length = 568

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 54.6 bits (132), Expect = 4e-10
 Identities = 18/38 (47%), Positives = 22/38 (57%)

Query: 390 RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 427
             +KT  GH G V  V + P G  LAS SDD T K+W+
Sbjct: 3   ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 53.9 bits (130), Expect = 7e-10
 Identities = 22/39 (56%), Positives = 27/39 (69%)

Query: 482 GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS 520
           GKLL +L GH  PV S+AFSP G  LASGS D ++ +W 
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 53.9 bits (130), Expect = 8e-10
 Identities = 22/39 (56%), Positives = 29/39 (74%)

Query: 482 GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS 520
           G+LL +L GH  PV S+AFSP G+YLASGS D ++ +W 
Sbjct: 2   GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 60.7 bits (147), Expect = 1e-09
 Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 13/160 (8%)

Query: 203 EIPNSDVTILEGHTSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNV 261
           ++    V  L+GHTS +    ++P  S +LASGS D T R+W I     +      P  +
Sbjct: 61  QMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCI 120

Query: 262 LVLKHVKGRTNEKSKDVTTLDWNGEGT-LLATGSYDGQARIWSTNGDLKCTLSKHKGPIF 320
           L             K ++ +DWN     ++ +  +D    IW    + +         + 
Sbjct: 121 L---------KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLS 171

Query: 321 SLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQQFEFHSG 359
           SLKWN KG+ LL+G+C  K   + D + +E    F  H G
Sbjct: 172 SLKWNIKGN-LLSGTCVGKHMHIIDPRKQEIASSFHIHDG 210

Length = 568

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 53.1 bits (128), Expect = 2e-09
 Identities = 19/35 (54%), Positives = 25/35 (71%)

Query: 209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIW 243
           +  L+GHT  V + A+SP G+LLASGS D T R+W
Sbjct: 4   LRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 58.8 bits (142), Expect = 4e-09
 Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 20/152 (13%)

Query: 385 KIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQ--------DKYVH 435
           K+  N PI    G +G +  V ++P     L + S+D T   W + +        D  VH
Sbjct: 63  KLASNPPI--LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVH 120

Query: 436 DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPV 495
            L+ H+K++  + + P+           +LASA  D  V +WDVE GK +  +  H + +
Sbjct: 121 -LQGHTKKVGIVSFHPSAMN--------VLASAGADMVVNVWDVERGKAVEVIKCHSDQI 171

Query: 496 YSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV 527
            SL ++  G  L + S DK ++I   ++G IV
Sbjct: 172 TSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIV 203

Length = 493

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 51.2 bits (123), Expect = 6e-09
 Identities = 17/38 (44%), Positives = 25/38 (65%)

Query: 390 RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 427
           + ++T  GH G V  V + P G+LLAS SDD T ++W+
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 51.2 bits (123), Expect = 8e-09
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIW 243
           +  L+GHT  V + A+SP G  LASGS D T ++W
Sbjct: 5   LKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 17/40 (42%), Positives = 25/40 (62%)

Query: 305 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD 344
           +G+L  TL  H GP+ S+ ++  G YL +GS D T  +WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 46.2 bits (110), Expect = 4e-07
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query: 306 GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD 344
           G L  TL  H GP+ S+ ++  G+ L +GS D T  VWD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 9/47 (19%)

Query: 432 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWD 478
           + +  L+ H+  + ++ +SP G           LAS S D T+KLWD
Sbjct: 3   ELLKTLKGHTGPVTSVAFSPDGK---------YLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 9/47 (19%)

Query: 432 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWD 478
           K +  L+ H+  + ++ +SP G+         +LAS S D TV++WD
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGN---------LLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|149534 pfam08513, LisH, LisH

 Score = 43.8 bits (105), Expect = 2e-06
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 7  EELNYLVFRYLQESGLLHSAFVLGYEA 33
          EELN L++ YL +SG   +A     E+
Sbjct: 1  EELNRLIYDYLVKSGYKETAEAFAKES 27

The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex. Length = 27

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 49.3 bits (117), Expect = 5e-06
 Identities = 42/170 (24%), Positives = 88/170 (51%), Gaps = 20/170 (11%)

Query: 367 RNNVSFATSSTDNMIYV--CK--IGENR----PIKTFAGHQGEVNCVKWDP-TGSLLASC 417
           R+   FAT+  +  I +  C+  I + R    P+   A  + +++ + W+    S +AS 
Sbjct: 493 RDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-RSKLSGICWNSYIKSQVASS 551

Query: 418 SDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW 477
           + +   ++W++ + + V +++EH K +++I +S     + +P    +LAS S D +VKLW
Sbjct: 552 NFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYS-----SADPT---LLASGSDDGSVKLW 603

Query: 478 DVELGKLLYSLNGHREPVYSLAF-SPTGEYLASGSLDKSMHIWSLKEGKI 526
            +  G  + ++   +  +  + F S +G  LA GS D  ++ + L+  K+
Sbjct: 604 SINQGVSIGTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL 652

Length = 793

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 49.3 bits (117), Expect = 5e-06
 Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 6/103 (5%)

Query: 465 LASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFS---PTGEYLASGSLDKSMHIWSL 521
           +AS++F+  V++WDV   +L+  +  H + V+S+ +S   PT   LASGS D S+ +WS+
Sbjct: 548 VASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSI 605

Query: 522 KEGKIVKTYTGNGGIFEVCWNKE-GDKIAACFANHTVCVLDFR 563
            +G  + T      I  V +  E G  +A   A+H V   D R
Sbjct: 606 NQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLR 648

Length = 793

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 48.4 bits (115), Expect = 7e-06
 Identities = 49/192 (25%), Positives = 85/192 (44%), Gaps = 33/192 (17%)

Query: 212 LEGHTSEVCACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGR 270
           L+GHT +V   ++ P A ++LAS   D    +W +  G +          V V+K     
Sbjct: 121 LQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA----------VEVIKCH--- 167

Query: 271 TNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFS-LKWNKKG 328
               S  +T+L+WN +G+LL T S D +  I    +G +  ++  H         W K+ 
Sbjct: 168 ----SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRK 223

Query: 329 DYLLTGSCDKT----AIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTD-NMIYV 383
           D ++T  C K+     ++WD +    K    +    T+D+D  + +       D N++Y+
Sbjct: 224 DLIITLGCSKSQQRQIMLWDTR----KMASPYS---TVDLDQSSALFIPFFDEDTNLLYI 276

Query: 384 CKIGENRPIKTF 395
              GE   I+ F
Sbjct: 277 GSKGEGN-IRCF 287

Length = 493

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 40.0 bits (94), Expect = 5e-05
 Identities = 12/29 (41%), Positives = 20/29 (68%)

Query: 275 SKDVTTLDWNGEGTLLATGSYDGQARIWS 303
           +  VT++ ++ +G LLA+GS DG  R+W 
Sbjct: 11  TGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|149648 pfam08662, eIF2A, Eukaryotic translation initiation factor eIF2A

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 50/219 (22%), Positives = 79/219 (36%), Gaps = 59/219 (26%)

Query: 322 LKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMI 381
           +KWNK G YLL            V                 DVD + N S+        +
Sbjct: 11  MKWNKNGTYLL------------VLVST-------------DVD-KTNKSYYGEFN---L 41

Query: 382 YVCKIGENRPIKTFA-GHQGEVNCVKWDPTGSLLASCSDDVTAKI--WNMKQDKYVHDLR 438
           Y+       P +      +G ++   W P G   A     + AKI  +++K +  +H L 
Sbjct: 42  YLIGE-TGGPDEVVELDKEGPIHDFAWSPNGKEFAVIYGYMPAKITFFDLKGNV-IHSLG 99

Query: 439 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS---TVKLWDVELGKLLYSLNGHREPV 495
           E  +   TI WSP G          ++  A F +    ++ WDV+  K + +        
Sbjct: 100 EQPRN--TIFWSPFGR---------LVLLAGFGNLAGQIEFWDVKNKKKIATA---EASN 145

Query: 496 YSL-AFSPTGEYLASGSL------DKSMHIWSLKEGKIV 527
            +   +SP G Y  + +       D    IW    GK+V
Sbjct: 146 ATDCEWSPDGRYFLTATTSPRLRVDNGFKIWHY-SGKLV 183

This is a family of eukaryotic translation initiation factors. Length = 194

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 10/29 (34%), Positives = 19/29 (65%)

Query: 275 SKDVTTLDWNGEGTLLATGSYDGQARIWS 303
           +  VT++ ++ +G  LA+GS DG  ++W 
Sbjct: 12  TGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif

 Score = 37.8 bits (89), Expect = 3e-04
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 4  ITSEELNYLVFRYLQESGLLHSAFVLGYEAGINK 37
          I+  ELN L+  YL  +G   +A  L  E+G++ 
Sbjct: 1  ISRSELNRLILEYLLRNGYEETAETLQKESGLSL 34

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 43.2 bits (101), Expect = 4e-04
 Identities = 60/320 (18%), Positives = 122/320 (38%), Gaps = 44/320 (13%)

Query: 275 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKH--------KGPIFSLKWNK 326
           S  V  + ++ +G   AT   + + +I+     +K     H        +  +  + WN 
Sbjct: 483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNS 542

Query: 327 K-GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR--NNVSFATSSTDNMIYV 383
                + + + +    VWDV   +   + + H      +D+   +    A+ S D  + +
Sbjct: 543 YIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKL 602

Query: 384 CKIGENRPIKTFAGHQGEVNCVKW-DPTGSLLASCSDDVTAKIWNMKQDKY-VHDLREHS 441
             I +   I T    +  + CV++   +G  LA  S D     ++++  K  +  +  HS
Sbjct: 603 WSINQGVSIGTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHS 661

Query: 442 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG------KLLYSLNGHREPV 495
           K +  +R+  + +          L S+S D+T+KLWD+ +         L+S  GH    
Sbjct: 662 KTVSYVRFVDSST----------LVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVK 711

Query: 496 YSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG--------------IFEVCW 541
             +  S +  Y+A+GS    + ++       V +Y                   I  VCW
Sbjct: 712 NFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCW 771

Query: 542 NKEGDKIAACFANHTVCVLD 561
             +   + A  +   + +L+
Sbjct: 772 RGQSSTLVAANSTGNIKILE 791

Length = 793

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	564
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0973	942	consensus Histone transcription regulator HIRA, WD	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.98
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.98
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.98
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.97
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.97
KOG1539	910	consensus WD repeat protein [General function pred	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG2096	420	consensus WD40 repeat protein [General function pr	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.96
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.96
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.95
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.95
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.95
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.95
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.95
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.95
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.95
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.95
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.95
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.95
KOG0639	705	consensus Transducin-like enhancer of split protei	99.95
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.94
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.94
KOG1274	933	consensus WD40 repeat protein [General function pr	99.94
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.94
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.94
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.94
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.94
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.94
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.94
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.94
KOG2096	420	consensus WD40 repeat protein [General function pr	99.94
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.94
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.94
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.94
KOG1274	933	consensus WD40 repeat protein [General function pr	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.93
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.93
KOG0267	825	consensus Microtubule severing protein katanin p80	99.93
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.93
KOG2055	514	consensus WD40 repeat protein [General function pr	99.93
KOG0646	476	consensus WD40 repeat protein [General function pr	99.92
KOG1273	405	consensus WD40 repeat protein [General function pr	99.92
KOG2048	691	consensus WD40 repeat protein [General function pr	99.92
KOG1539	910	consensus WD repeat protein [General function pred	99.92
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.92
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.92
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.92
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.92
KOG0267	825	consensus Microtubule severing protein katanin p80	99.91
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.91
KOG0646	476	consensus WD40 repeat protein [General function pr	99.91
KOG2048	691	consensus WD40 repeat protein [General function pr	99.91
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.91
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.91
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.9
KOG2055	514	consensus WD40 repeat protein [General function pr	99.9
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.9
KOG4328	498	consensus WD40 protein [Function unknown]	99.9
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.9
COG2319	466	FOG: WD40 repeat [General function prediction only	99.9
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.89
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.89
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.89
KOG0639	705	consensus Transducin-like enhancer of split protei	99.88
KOG1273	405	consensus WD40 repeat protein [General function pr	99.88
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.88
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.87
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.87
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.87
KOG4328	498	consensus WD40 protein [Function unknown]	99.87
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.87
COG2319	466	FOG: WD40 repeat [General function prediction only	99.87
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.86
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.86
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.86
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.86
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.86
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.86
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.85
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.85
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.85
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.84
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.84
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.83
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.82
KOG0649	325	consensus WD40 repeat protein [General function pr	99.81
KOG4227	609	consensus WD40 repeat protein [General function pr	99.81
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.81
KOG1963	792	consensus WD40 repeat protein [General function pr	99.81
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.8
KOG1963	792	consensus WD40 repeat protein [General function pr	99.8
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.8
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.79
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.79
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.79
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.78
PRK11028	330	6-phosphogluconolactonase; Provisional	99.78
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.77
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.77
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.77
KOG1188	376	consensus WD40 repeat protein [General function pr	99.76
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.75
PRK01742	429	tolB translocation protein TolB; Provisional	99.75
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.75
KOG2139	445	consensus WD40 repeat protein [General function pr	99.74
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.74
PRK01742	429	tolB translocation protein TolB; Provisional	99.74
KOG0649	325	consensus WD40 repeat protein [General function pr	99.74
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.74
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.73
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.72
KOG1334	559	consensus WD40 repeat protein [General function pr	99.72
KOG2139	445	consensus WD40 repeat protein [General function pr	99.7
PRK11028	330	6-phosphogluconolactonase; Provisional	99.69
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.69
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.68
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.68
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.68
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.68
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.67
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.67
KOG4227	609	consensus WD40 repeat protein [General function pr	99.64
PRK05137	435	tolB translocation protein TolB; Provisional	99.64
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.64
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.64
KOG1188	376	consensus WD40 repeat protein [General function pr	99.63
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.63
PRK04922	433	tolB translocation protein TolB; Provisional	99.63
KOG1310	758	consensus WD40 repeat protein [General function pr	99.62
PRK02889	427	tolB translocation protein TolB; Provisional	99.62
PRK03629	429	tolB translocation protein TolB; Provisional	99.62
PRK03629	429	tolB translocation protein TolB; Provisional	99.61
PRK05137	435	tolB translocation protein TolB; Provisional	99.61
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.61
PRK04922	433	tolB translocation protein TolB; Provisional	99.6
KOG2321	703	consensus WD40 repeat protein [General function pr	99.6
KOG1334	559	consensus WD40 repeat protein [General function pr	99.59
PRK02889	427	tolB translocation protein TolB; Provisional	99.59
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.59
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.59
KOG1310	758	consensus WD40 repeat protein [General function pr	99.57
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.57
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.56
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.55
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.54
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.54
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.54
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.51
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.51
KOG2315	566	consensus Predicted translation initiation factor	99.5
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.5
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.48
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.47
PRK01029	428	tolB translocation protein TolB; Provisional	99.46
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.46
PRK00178	430	tolB translocation protein TolB; Provisional	99.46
KOG2321	703	consensus WD40 repeat protein [General function pr	99.44
PRK01029	428	tolB translocation protein TolB; Provisional	99.44
KOG4547	541	consensus WD40 repeat-containing protein [General	99.42
KOG2314	698	consensus Translation initiation factor 3, subunit	99.42
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.41
PRK04792	448	tolB translocation protein TolB; Provisional	99.41
PRK00178	430	tolB translocation protein TolB; Provisional	99.41
KOG2315	566	consensus Predicted translation initiation factor	99.4
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.39
KOG4547	541	consensus WD40 repeat-containing protein [General	99.37
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.35
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.35
PRK04792	448	tolB translocation protein TolB; Provisional	99.35
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.34
KOG2314	698	consensus Translation initiation factor 3, subunit	99.34
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.33
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.32
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.31
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.3
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.29
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.28
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.25
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.23
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.23
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.22
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.2
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.2
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.17
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.14
PF08513	27	LisH: LisH; InterPro: IPR013720 The LisH motif is	99.13
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.1
PRK04043	419	tolB translocation protein TolB; Provisional	99.09
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.07
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.05
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.04
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.03
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	99.01
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.98
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.97
PRK04043	419	tolB translocation protein TolB; Provisional	98.95
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.95
COG4946	668	Uncharacterized protein related to the periplasmic	98.91
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.9
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.89
COG4946	668	Uncharacterized protein related to the periplasmic	98.87
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.85
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.85
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.85
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.85
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.84
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.83
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.83
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.79
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.77
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.73
KOG2695	425	consensus WD40 repeat protein [General function pr	98.69
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.68
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.66
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.65
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.65
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.61
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.61
KOG2695	425	consensus WD40 repeat protein [General function pr	98.58
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.56
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.54
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.51
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.5
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.5
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.47
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.47
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.42
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.42
PRK02888	635	nitrous-oxide reductase; Validated	98.42
KOG3621	726	consensus WD40 repeat-containing protein [General	98.39
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.36
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.34
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.33
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.33
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.31
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.31
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.23
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.22
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.22
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.2
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.19
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.15
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.14
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.05
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.0
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.96
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.96
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.95
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.95
smart00667	34	LisH Lissencephaly type-1-like homology motif. Alp	97.93
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.93
PRK02888	635	nitrous-oxide reductase; Validated	97.93
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.91
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.9
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.87
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.84
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.8
KOG3621	726	consensus WD40 repeat-containing protein [General	97.8
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.8
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.79
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.76
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.64
COG3391	381	Uncharacterized conserved protein [Function unknow	97.63
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.62
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.62
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.59
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.52
PRK13616	591	lipoprotein LpqB; Provisional	97.49
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.44
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.43
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.43
COG3391	381	Uncharacterized conserved protein [Function unknow	97.4
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.38
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.36
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.33
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.32
KOG2395	644	consensus Protein involved in vacuole import and d	97.27
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.26
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.25
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.25
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.25
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.06
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.06
PRK13616	591	lipoprotein LpqB; Provisional	97.03
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.93
KOG2444	238	consensus WD40 repeat protein [General function pr	96.92
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.85
PRK13684	334	Ycf48-like protein; Provisional	96.84
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.79
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.75
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.71
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.46
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.45
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.38
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.38
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.37
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.36
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.33
KOG2395	644	consensus Protein involved in vacuole import and d	96.27
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.19
PHA02713	557	hypothetical protein; Provisional	96.16
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.13
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.08
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	96.04
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.02
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.94
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.86
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.58
PHA02713	557	hypothetical protein; Provisional	95.33
KOG2444	238	consensus WD40 repeat protein [General function pr	95.05
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.05
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.0
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	94.82
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	94.81
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.75
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.56
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.48
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	94.44
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	94.42
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.17
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	94.17
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.82
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	93.65
PHA03098	534	kelch-like protein; Provisional	93.63
KOG2377	657	consensus Uncharacterized conserved protein [Funct	93.59
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	93.4
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.26
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	93.24
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	93.14
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	93.08
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	92.93
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	92.9
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	92.8
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	92.66
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	92.6
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.52
PRK10115	686	protease 2; Provisional	92.24
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	91.99
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	91.73
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	91.67
PRK10115	686	protease 2; Provisional	91.52
PHA02790	480	Kelch-like protein; Provisional	91.44
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	91.39
PHA03098	534	kelch-like protein; Provisional	90.9
PF14727	418	PHTB1_N: PTHB1 N-terminus	90.81
COG5167	776	VID27 Protein involved in vacuole import and degra	90.58
KOG2247	615	consensus WD40 repeat-containing protein [General	90.52
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	90.15
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	90.14
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	90.13
KOG2377	657	consensus Uncharacterized conserved protein [Funct	90.05
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	90.0
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	89.93
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	89.81
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	89.21
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	88.8
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	88.43
PHA02790	480	Kelch-like protein; Provisional	88.31
PF13449	326	Phytase-like: Esterase-like activity of phytase	88.3
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	87.77
COG5167	776	VID27 Protein involved in vacuole import and degra	87.2
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	86.89
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	86.43
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	85.85
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	84.61
PRK13684	334	Ycf48-like protein; Provisional	84.42
KOG2659	228	consensus LisH motif-containing protein [Cytoskele	84.04
KOG3616	1636	consensus Selective LIM binding factor [Transcript	83.59
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	83.54
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	83.48
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	83.35
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	83.16
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	82.64
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	82.4
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	82.15
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	81.9
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	81.72
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	81.52

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2e-103  Score=730.48  Aligned_cols=520  Identities=57%  Similarity=0.942  Sum_probs=430.2

Q ss_pred             CCcCccchhhhhHHHHHhcCCceeeeccccccCCccCCCCCCCCCchhHHHHHHhhceeEeeeeeecCCCCCCccccccc
Q 008467            2 SSITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLEMEANLTCQSDVDMDEDFSF   81 (564)
Q Consensus         2 ~~i~s~evn~Li~ryl~E~g~~~sa~~~~~E~~~~~~~~~~~~ip~~aLv~~~qkgl~y~~~e~~~~~~~~~~~~~~~~~   81 (564)
                      .||||+||||||||||||+||.||||+|++|++|++++++...|||||||++|||||||+|+|.++ .+++...+++++.
T Consensus         1 msitsdEvN~LV~RYLqE~G~~hsaftf~~Et~is~~n~~~~~vp~gaLi~ivQKGLqY~E~E~~~-~~~~~v~d~~~e~   79 (524)
T KOG0273|consen    1 MSITSDEVNFLVWRYLQESGFSHSAFTFGIETGISQSNINGSLVPPGALISIVQKGLQYVEAEKHL-NESGVVFDAPIES   79 (524)
T ss_pred             CcccHHHHHHHHHHHHHHcCcceeeEEeeecccccccCCCccccChHHHHHHHHhhhhhhheeeee-ccCCccccccccc
Confidence            379999999999999999999999999999999999999889999999999999999999999999 6777777788889


Q ss_pred             cccccccchhHHHHHHHHHHHhhccCCCCCccCccccCccccccchhhhhhHHHHHHHhhhhhhhcccCcccccCCCCCc
Q 008467           82 LQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHEIEHGRVKEKERLDREKERERDKERVENEKEPEKQHESHPD  161 (564)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (564)
                      +.+.+++.++++++++.....+...+....                +.  +....++..    ....+..+..++  ..+
T Consensus        80 ~~~~d~v~~~~~ql~~~~~~e~~s~~~~~~----------------~~--~~~~~~~~~----s~s~~ag~~~~~--d~a  135 (524)
T KOG0273|consen   80 LSLEDLVMEDVVQLRQQAFREKLSEEQFCA----------------QL--KIAQDKESG----STSTPAGSISQR--DGA  135 (524)
T ss_pred             cchhhhccccccccchhhhhhhccccchhh----------------hh--hhhhhhccC----CcCCCCCccccc--cch
Confidence            999999999888887432222111100000                00  000000000    000000000000  000


Q ss_pred             cchhhhhhccccCCCCccccccCCCCCCCccccccCCccceeecCCceeEccCCccceEEEEECCCCC-EEEEEECCCcE
Q 008467          162 KEMLTVQEEKVNSKPEENGVLQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGS-LLASGSGDSTA  240 (564)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp~~~-~lasgs~D~~i  240 (564)
                      ..+..      ....++.....-....+++.+..     ..+||...+.+++ |..+|++|+|+|-.. +|++|+.|.++
T Consensus       136 ~~~er------~~n~eed~a~~I~~~~e~~~i~~-----~~~I~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~a  203 (524)
T KOG0273|consen  136 KTGER------TSNGEEDKAMSIDVHTEPMEIDG-----GVEIPSSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTA  203 (524)
T ss_pred             hhcch------hcccccCccccccccccceeecc-----cccccccceeecc-CCCceEEEecCchhhhhhhccCCccce
Confidence            00000      00000000000111223333332     3468888888888 999999999999755 99999999999


Q ss_pred             EEEeCCCCCCCCCCCCCCceEEEEEeec---cccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCC
Q 008467          241 RIWTIADGTSNGGAQNGPLNVLVLKHVK---GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKG  317 (564)
Q Consensus       241 ~iW~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~  317 (564)
                      |+|++.......      ....++++..   +...+..++||+++|+.+|.+||+|++||.+|+|+..|.+..++..|++
T Consensus       204 ri~~l~e~~~~~------~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~Hkg  277 (524)
T KOG0273|consen  204 RIWNLLENSNIG------STQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKG  277 (524)
T ss_pred             eeeeehhhcccc------chhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCC
Confidence            999987421111      1112344433   3444567899999999999999999999999999999999999999999


Q ss_pred             CEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecC
Q 008467          318 PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG  397 (564)
Q Consensus       318 ~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~  397 (564)
                      ||++|+|+..|+||++++.|+++.+||..++++.++|.+|..+.++++|.++..|++++.|+.|+||.++...|+.+|.|
T Consensus       278 PI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~G  357 (524)
T KOG0273|consen  278 PIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIG  357 (524)
T ss_pred             ceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEE
Q 008467          398 HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW  477 (564)
Q Consensus       398 h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iw  477 (564)
                      |.++|+++.|+|.|.+|+|||+|++++||++....+.+.|.+|.+.|+++.|+|.+....+|+....+++++.|++|++|
T Consensus       358 H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lw  437 (524)
T KOG0273|consen  358 HHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLW  437 (524)
T ss_pred             ccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcE
Q 008467          478 DVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTV  557 (564)
Q Consensus       478 d~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v  557 (564)
                      |+..+.+++++..|..||++++|||+|+|+|+|+.||.|+||+.+++++++.+.+.++|++|+|+.+|++|++|..++.+
T Consensus       438 dv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~v  517 (524)
T KOG0273|consen  438 DVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSV  517 (524)
T ss_pred             EccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeC
Q 008467          558 CVLDFRM  564 (564)
Q Consensus       558 ~v~~~~~  564 (564)
                      +|+|||+
T Consensus       518 cvldlr~  524 (524)
T KOG0273|consen  518 CVLDLRK  524 (524)
T ss_pred             eEEEecC
Confidence            9999996

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.9e-57  Score=408.73  Aligned_cols=325  Identities=30%  Similarity=0.531  Sum_probs=295.9

Q ss_pred             eEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE
Q 008467          210 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL  289 (564)
Q Consensus       210 ~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~  289 (564)
                      ..+.||..+|.|++|+|+|+.||||++|.++|+||+.+....             ..++    .|...|.|++|+|||+.
T Consensus       109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~-------------~t~K----gH~~WVlcvawsPDgk~  171 (480)
T KOG0271|consen  109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPL-------------FTCK----GHKNWVLCVAWSPDGKK  171 (480)
T ss_pred             cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcc-------------eeec----CCccEEEEEEECCCcch
Confidence            457899999999999999999999999999999999875421             1222    35678999999999999


Q ss_pred             EEEEeCCCeEEEEECC--CceeEeecCCCCCEEEEEeCC-----CCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeE
Q 008467          290 LATGSYDGQARIWSTN--GDLKCTLSKHKGPIFSLKWNK-----KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL  362 (564)
Q Consensus       290 l~sg~~dg~i~vw~~~--~~~~~~~~~h~~~V~~l~~~~-----~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~  362 (564)
                      ||+|+.||.|++||..  +..-..+.+|+..|++|+|.|     ...+|+++|.||+|+|||+..+.++..+..|..++.
T Consensus       172 iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VT  251 (480)
T KOG0271|consen  172 IASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVT  251 (480)
T ss_pred             hhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceE
Confidence            9999999999999953  455668999999999999976     567899999999999999999999999999999999


Q ss_pred             EEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEEC-----------CCCC-------------------
Q 008467          363 DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWD-----------PTGS-------------------  412 (564)
Q Consensus       363 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~-----------~~~~-------------------  412 (564)
                      ++.|-....+.+++.|++|++|+...++.++.++||...|+.++.+           |.++                   
T Consensus       252 CvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~  331 (480)
T KOG0271|consen  252 CVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAV  331 (480)
T ss_pred             EEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999998876           3333                   


Q ss_pred             ------EEEEEeCCCcEEEEeCCC-CeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEE
Q 008467          413 ------LLASCSDDVTAKIWNMKQ-DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLL  485 (564)
Q Consensus       413 ------~las~s~dg~i~iwd~~~-~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~  485 (564)
                            .+++||+|+++.+|+... .+++..+.+|...|..+.|+|++.         ++||+|+|..|++||.++|+.+
T Consensus       332 ~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r---------~IASaSFDkSVkLW~g~tGk~l  402 (480)
T KOG0271|consen  332 LKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGR---------YIASASFDKSVKLWDGRTGKFL  402 (480)
T ss_pred             hccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCcc---------EEEEeecccceeeeeCCCcchh
Confidence                  499999999999999654 457888999999999999999986         8999999999999999999999


Q ss_pred             EEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCC-CEEEEEEccCCCEEEEEEcCCcEEEE
Q 008467          486 YSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVL  560 (564)
Q Consensus       486 ~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~-~i~~~~w~~~g~~la~~~~~~~v~v~  560 (564)
                      .++++|-.+|+.++||.|.++|++||.|.+++||++++.++...+.++. .|+.+.|+|||.++|.|..|+.+++|
T Consensus       403 asfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw  478 (480)
T KOG0271|consen  403 ASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLW  478 (480)
T ss_pred             hhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEee
Confidence            9999999999999999999999999999999999999999988888654 69999999999999999999988887

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.4e-49  Score=360.05  Aligned_cols=288  Identities=32%  Similarity=0.590  Sum_probs=255.1

Q ss_pred             CceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC-
Q 008467          207 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-  285 (564)
Q Consensus       207 ~~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-  285 (564)
                      .+..+.++|...|.|++|+|||+.||||+.||+|++||..+|+..+.                ...+|.+.|++++|.| 
T Consensus       148 Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~----------------~l~gH~K~It~Lawep~  211 (480)
T KOG0271|consen  148 TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR----------------ALRGHKKWITALAWEPL  211 (480)
T ss_pred             CcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccc----------------cccCcccceeEEeeccc
Confidence            34578899999999999999999999999999999999888765432                1235678999999976 


Q ss_pred             ----CCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccC
Q 008467          286 ----EGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP  360 (564)
Q Consensus       286 ----~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~  360 (564)
                          ..++||+++.||.++|||+. +.....+.+|+.+|+|++|--+| +|++||.|++|++|+...|.+.+.+..|..-
T Consensus       212 hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahw  290 (480)
T KOG0271|consen  212 HLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHW  290 (480)
T ss_pred             ccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchh
Confidence                57899999999999999986 45677899999999999998665 8999999999999999988887777776654


Q ss_pred             eEEEEcC-------------C------------------------CceEEEEeCCCeEEEEEcCC-CceeeEecCCCcce
Q 008467          361 TLDVDWR-------------N------------------------NVSFATSSTDNMIYVCKIGE-NRPIKTFAGHQGEV  402 (564)
Q Consensus       361 ~~~~~~~-------------~------------------------~~~~~~~~~d~~i~~~~~~~-~~~~~~~~~h~~~i  402 (564)
                      +..++..             .                        ...++++++|.++++|+-.. .+|+..+.||...|
T Consensus       291 vN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lV  370 (480)
T KOG0271|consen  291 VNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALV  370 (480)
T ss_pred             eeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhhe
Confidence            4333321             1                        12589999999999998765 45899999999999


Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC
Q 008467          403 NCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG  482 (564)
Q Consensus       403 ~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~  482 (564)
                      +.+.||||++++|++|.|..|++|+.++++++.+|++|-..||.++|+.+.+         +|+|||.|.++++|++++.
T Consensus       371 n~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR---------LlVS~SkDsTLKvw~V~tk  441 (480)
T KOG0271|consen  371 NHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR---------LLVSGSKDSTLKVWDVRTK  441 (480)
T ss_pred             eeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCcc---------EEEEcCCCceEEEEEeeee
Confidence            9999999999999999999999999999999999999999999999998865         8999999999999999999


Q ss_pred             eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008467          483 KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS  520 (564)
Q Consensus       483 ~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~  520 (564)
                      ++...+.+|.+.|+++.|+|||..+++|+.|..+++|.
T Consensus       442 Kl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  442 KLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             eecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            99999999999999999999999999999999999995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.5e-47  Score=350.54  Aligned_cols=281  Identities=26%  Similarity=0.481  Sum_probs=256.1

Q ss_pred             CCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC--CCEEE
Q 008467          214 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE--GTLLA  291 (564)
Q Consensus       214 ~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~--g~~l~  291 (564)
                      |-+.+|..|.||++++.|||||-+|.+++|..++..             .+..+    .+|...|.++.|+|.  +..+|
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~-------------~~~~l----~gH~~~v~~~~fhP~~~~~~la  235 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCN-------------LLQTL----RGHTSRVGAAVFHPVDSDLNLA  235 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcc-------------eeEEE----eccccceeeEEEccCCCcccee
Confidence            566889999999999999999999999999986542             11222    245678999999996  67899


Q ss_pred             EEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCc
Q 008467          292 TGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV  370 (564)
Q Consensus       292 sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (564)
                      ||+.||++++|+.++ ..+..+.+|...|..++|+|+|++|+|+|.|.+.++||++++..                    
T Consensus       236 t~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E--------------------  295 (459)
T KOG0272|consen  236 TASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE--------------------  295 (459)
T ss_pred             eeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh--------------------
Confidence            999999999999887 67778999999999999999999999999999999999988642                    


Q ss_pred             eEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEc
Q 008467          371 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWS  450 (564)
Q Consensus       371 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~  450 (564)
                                           +....||...|.+++|+|||.+++||+.|..-||||+++++++..+.+|.++|+++.|+
T Consensus       296 ---------------------lL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fs  354 (459)
T KOG0272|consen  296 ---------------------LLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFS  354 (459)
T ss_pred             ---------------------hHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeEC
Confidence                                 22346899999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 008467          451 PTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSP-TGEYLASGSLDKSMHIWSLKEGKIVKT  529 (564)
Q Consensus       451 p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp-dg~~lasgs~dg~i~iw~~~~~~~~~~  529 (564)
                      |+|.         .|||||.|++++|||++..+.++++.+|..-|+.|.|+| .|++|+|+|.|++++||...++.++++
T Consensus       355 PNGy---------~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ks  425 (459)
T KOG0272|consen  355 PNGY---------HLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKS  425 (459)
T ss_pred             CCce---------EEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchh
Confidence            9984         799999999999999999999999999999999999999 689999999999999999999999999


Q ss_pred             EecCC-CEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467          530 YTGNG-GIFEVCWNKEGDKIAACFANHTVCVLD  561 (564)
Q Consensus       530 ~~~~~-~i~~~~w~~~g~~la~~~~~~~v~v~~  561 (564)
                      +.++. .|.++..+++|+.+++++.|.++.+|.
T Consensus       426 LaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  426 LAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             hcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            99865 599999999999999999999999984

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=3.3e-47  Score=338.98  Aligned_cols=478  Identities=19%  Similarity=0.295  Sum_probs=356.9

Q ss_pred             CcCccchhhhhHHHHHhcCCceeeeccccccCCccCCCCCCCCCchhHHHHHHhhc--eeEeeeeeecCCCCCCcccccc
Q 008467            3 SITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGL--QYLEMEANLTCQSDVDMDEDFS   80 (564)
Q Consensus         3 ~i~s~evn~Li~ryl~E~g~~~sa~~~~~E~~~~~~~~~~~~ip~~aLv~~~qkgl--~y~~~e~~~~~~~~~~~~~~~~   80 (564)
                      -|.|.+|..||-+||+|+.+..+..+||+|++|+.+.+++-    ..+|+.|..|.  ..+..-..++.++....     
T Consensus         4 eiessdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSv----d~Fv~dI~sG~WD~VL~~vqsLKLP~kkL~-----   74 (508)
T KOG0275|consen    4 EIESSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSV----DGFVNDINSGHWDTVLKTVQSLKLPDKKLI-----   74 (508)
T ss_pred             eeecchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhH----HHHHHhcccCchHHHHHHHHhccCchhHHH-----
Confidence            37789999999999999999999999999999999998765    78999999887  45555555544444433     


Q ss_pred             ccccccccchhHHHHHHHHHHHhhccCCCCC---ccCccccCccccccch------hhh-hhHHHHHHHhhhhhhhcccC
Q 008467           81 FLQPMDLITKDVCELRQMVKEKKKNLNGDRD---KENDVDRGHEIEHGRV------KEK-ERLDREKERERDKERVENEK  150 (564)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~~  150 (564)
                        ..++.+..++.|+++...++...++.+.+   +..++++....++-.+      .+. ....+|+++......+..+ 
T Consensus        75 --dLYEqivlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~dssKEkrRa~IAQ~ls~E-  151 (508)
T KOG0275|consen   75 --DLYEQIVLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGDSSKEKRRAVIAQALSGE-  151 (508)
T ss_pred             --HHHHHHHHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCcchHHHHHHHHHHHhcCc-
Confidence              36777788888888887777666676653   4445555544443211      111 1134555554443333222 


Q ss_pred             cccccCCCCCccchhhhhhccccCCCCccccccCCC-----CCCCccccccCCccceeecCCc-eeEccCCccceEEEEE
Q 008467          151 EPEKQHESHPDKEMLTVQEEKVNSKPEENGVLQGEK-----GPEPMDIATTSASESFEIPNSD-VTILEGHTSEVCACAW  224 (564)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~l~~h~~~V~~~~~  224 (564)
                           ....|+++.+..-.+..+++..+....+|..     +...+.     ..+.-..|..- ..+-.|.++.+.|..|
T Consensus       152 -----V~VVppSRLlaLlGQaLKWQqHQGLLPPGt~iDLFRGkAA~K-----~~~Ee~~Pt~l~r~IKFg~KSh~EcA~F  221 (508)
T KOG0275|consen  152 -----VHVVPPSRLLALLGQALKWQQHQGLLPPGTTIDLFRGKAAMK-----DQEEERYPTQLARSIKFGQKSHVECARF  221 (508)
T ss_pred             -----eEEcChHHHHHHHHHHhhhHhhcCCCCCCceeeeccchhhhh-----hhHhhhchHHhhhheecccccchhheee
Confidence                 2234667777777777777766654444321     111110     00111123222 2344577788999999


Q ss_pred             CCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEC
Q 008467          225 SPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST  304 (564)
Q Consensus       225 sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~  304 (564)
                      ||||.+|++||.||+|.+|+..+|+......         ++..........+|.|++||.|..++|+|+.||.|+||..
T Consensus       222 SPDgqyLvsgSvDGFiEVWny~~GKlrKDLk---------YQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri  292 (508)
T KOG0275|consen  222 SPDGQYLVSGSVDGFIEVWNYTTGKLRKDLK---------YQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI  292 (508)
T ss_pred             CCCCceEeeccccceeeeehhccchhhhhhh---------hhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence            9999999999999999999998886433211         1222233445688999999999999999999999999986


Q ss_pred             C-CceeEeec-CCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEE
Q 008467          305 N-GDLKCTLS-KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIY  382 (564)
Q Consensus       305 ~-~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  382 (564)
                      . |.+...|. .|+..|+++.|+.++.++++++.|.++++.-+++|+                                 
T Consensus       293 ~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK---------------------------------  339 (508)
T KOG0275|consen  293 ETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK---------------------------------  339 (508)
T ss_pred             ecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch---------------------------------
Confidence            4 55555554 899999999999999999999999999999877654                                 


Q ss_pred             EEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeeccccc--ccEEEEEEccCCCCCCCCC
Q 008467          383 VCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHS--KEIYTIRWSPTGSGTNNPN  460 (564)
Q Consensus       383 ~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~--~~i~~i~~~p~~~~~~~~~  460 (564)
                              .++.|+||.+.|+.+.|.+||..++++|.||+|++|+.++..|+.+|+...  -+|.++..-|...      
T Consensus       340 --------~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnp------  405 (508)
T KOG0275|consen  340 --------CLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNP------  405 (508)
T ss_pred             --------hHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCC------
Confidence                    456788999999999999999999999999999999999999998887543  4567776666542      


Q ss_pred             CcEEEEEEeCCCeEEEEeCCCCeEEEEEeCC---CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCC-CE
Q 008467          461 QQLILASASFDSTVKLWDVELGKLLYSLNGH---REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GI  536 (564)
Q Consensus       461 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h---~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~-~i  536 (564)
                        ..++.|...++|.|.++. |+.+.++...   .+..-+.+.||.|.|+.+.+.|+.++.|.+.+|++..++.-+. .+
T Consensus       406 --eh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdv  482 (508)
T KOG0275|consen  406 --EHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDV  482 (508)
T ss_pred             --ceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccc
Confidence              246788899999999987 8888887532   2445667899999999999999999999999999998887543 57


Q ss_pred             EEEEEccCCCEEEEEEcCCcEEEEE
Q 008467          537 FEVCWNKEGDKIAACFANHTVCVLD  561 (564)
Q Consensus       537 ~~~~w~~~g~~la~~~~~~~v~v~~  561 (564)
                      ..++-+|.-+.||+-+.||.+.+|.
T Consensus       483 IGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  483 IGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             cccccCcccchhhhhcccchhhhcC
Confidence            8899999999999999999988873

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=6.6e-43  Score=307.89  Aligned_cols=285  Identities=26%  Similarity=0.463  Sum_probs=256.2

Q ss_pred             eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467          209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  288 (564)
Q Consensus       209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  288 (564)
                      .++|+||...|.++.|++|.++|+|+|.||.+.|||..+...        .+.         ....+..|-+++|+|.|+
T Consensus        48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK--------~ha---------ipl~s~WVMtCA~sPSg~  110 (343)
T KOG0286|consen   48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNK--------VHA---------IPLPSSWVMTCAYSPSGN  110 (343)
T ss_pred             EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccc--------eeE---------EecCceeEEEEEECCCCC
Confidence            378999999999999999999999999999999999765421        111         112356799999999999


Q ss_pred             EEEEEeCCCeEEEEECCC-------ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCe
Q 008467          289 LLATGSYDGQARIWSTNG-------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT  361 (564)
Q Consensus       289 ~l~sg~~dg~i~vw~~~~-------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~  361 (564)
                      ++|+|+.|+...||++..       .....+.+|++-+.++.|-+ ..+|+|+|.|.++.+||+++++....|..|.+.+
T Consensus       111 ~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV  189 (343)
T KOG0286|consen  111 FVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDV  189 (343)
T ss_pred             eEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccE
Confidence            999999999999998652       24456899999999999998 5689999999999999999999999999999999


Q ss_pred             EEEEcCC--CceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeeccc
Q 008467          362 LDVDWRN--NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE  439 (564)
Q Consensus       362 ~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~  439 (564)
                      +.++..+  ...|++++.|+..++||++.+..++.|.||++.|++++|.|+|.-+++||+|++.|+||++..+.+..+..
T Consensus       190 ~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~  269 (343)
T KOG0286|consen  190 MSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSH  269 (343)
T ss_pred             EEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeecc
Confidence            9988765  57899999999999999999999999999999999999999999999999999999999999888776653


Q ss_pred             --ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 008467          440 --HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMH  517 (564)
Q Consensus       440 --~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~  517 (564)
                        -..+|++++|+..|+         +|.+|..|.++.+||.-.++.+..+.+|...|.++..+|||..+++||.|.+|+
T Consensus       270 ~~~~~gitSv~FS~SGR---------lLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lr  340 (343)
T KOG0286|consen  270 DSIICGITSVAFSKSGR---------LLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLR  340 (343)
T ss_pred             CcccCCceeEEEccccc---------EEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHhee
Confidence              345789999999886         788899999999999999999999999999999999999999999999999999


Q ss_pred             EEe
Q 008467          518 IWS  520 (564)
Q Consensus       518 iw~  520 (564)
                      ||.
T Consensus       341 iW~  343 (343)
T KOG0286|consen  341 IWA  343 (343)
T ss_pred             ecC
Confidence            994

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-41  Score=298.52  Aligned_cols=291  Identities=26%  Similarity=0.462  Sum_probs=246.9

Q ss_pred             eEccCCccceEEEEECCC-CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467          210 TILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  288 (564)
Q Consensus       210 ~~l~~h~~~V~~~~~sp~-~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  288 (564)
                      -+|++|++.|..++-.+. ...|++++.|.++.+|++.......       . ...+.+    .+|+..|..+..++||+
T Consensus         9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~-------G-~~~r~~----~GHsH~v~dv~~s~dg~   76 (315)
T KOG0279|consen    9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKY-------G-VPVRRL----TGHSHFVSDVVLSSDGN   76 (315)
T ss_pred             eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcccc-------C-ceeeee----eccceEecceEEccCCc
Confidence            478999999999999997 5799999999999999987542110       0 012222    34677899999999999


Q ss_pred             EEEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcC
Q 008467          289 LLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR  367 (564)
Q Consensus       289 ~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  367 (564)
                      ++++++.||.+|+||..+ +....|.+|...|.+++|++++.++++||.|+++++||........               
T Consensus        77 ~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t---------------  141 (315)
T KOG0279|consen   77 FALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYT---------------  141 (315)
T ss_pred             eEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEE---------------
Confidence            999999999999999875 6777899999999999999999999999999999999975432110               


Q ss_pred             CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC--CCEEEEEeCCCcEEEEeCCCCeeeeecccccccEE
Q 008467          368 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY  445 (564)
Q Consensus       368 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~--~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~  445 (564)
                                        +       .-.+|.+.|+|+.|+|+  ..+|+++|.|+++++||+++.+..+.+.+|++.++
T Consensus       142 ------------------~-------~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~  196 (315)
T KOG0279|consen  142 ------------------I-------HEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVN  196 (315)
T ss_pred             ------------------E-------ecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEE
Confidence                              0       00123678999999998  68899999999999999999999999999999999


Q ss_pred             EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 008467          446 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK  525 (564)
Q Consensus       446 ~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~  525 (564)
                      .+.++|+|+         +.++|+.||.+.+||++.++.++++. |..+|.+++|+|+..+|+.+...+ |+|||+.++.
T Consensus       197 t~~vSpDGs---------lcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~~s-IkIwdl~~~~  265 (315)
T KOG0279|consen  197 TVTVSPDGS---------LCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATATS-IKIWDLESKA  265 (315)
T ss_pred             EEEECCCCC---------EEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeeccCCc-eEEEeccchh
Confidence            999999997         78999999999999999999998886 778999999999999998776554 9999999998


Q ss_pred             EEEEEecC---------C-CEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          526 IVKTYTGN---------G-GIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       526 ~~~~~~~~---------~-~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      ++..+...         . ...+++|++||..|.+|+.|+.|+||-++
T Consensus       266 ~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  266 VVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             hhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence            87766421         1 24689999999999999999999999875

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=3.2e-40  Score=312.21  Aligned_cols=353  Identities=24%  Similarity=0.421  Sum_probs=274.7

Q ss_pred             eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCC----CCC---------------------------
Q 008467          209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGA----QNG---------------------------  257 (564)
Q Consensus       209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~----~~~---------------------------  257 (564)
                      +.++..|...|+...|||.|.++|+|...|.+||||......+.+.    ..+                           
T Consensus        52 ~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~  131 (603)
T KOG0318|consen   52 VDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHV  131 (603)
T ss_pred             eeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEE
Confidence            4567889999999999999999999999999999997542111000    000                           


Q ss_pred             -----------------CceEEEEE------------------------eeccccccCCCCeEEEEECCCCCEEEEEeCC
Q 008467          258 -----------------PLNVLVLK------------------------HVKGRTNEKSKDVTTLDWNGEGTLLATGSYD  296 (564)
Q Consensus       258 -----------------~~~~~~~~------------------------~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d  296 (564)
                                       .++...++                        +++.....|++-|.|+.|+|||.++++++.|
T Consensus       132 F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsD  211 (603)
T KOG0318|consen  132 FLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSD  211 (603)
T ss_pred             EEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCC
Confidence                             00000010                        1122334678889999999999999999999


Q ss_pred             CeEEEEEC-CCceeEeec---CCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeeccc---CeEEEEcCCC
Q 008467          297 GQARIWST-NGDLKCTLS---KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG---PTLDVDWRNN  369 (564)
Q Consensus       297 g~i~vw~~-~~~~~~~~~---~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~  369 (564)
                      |.+.+||- .|.....+.   +|++.|++|.|+||+++|+|+|.|++++|||+.+.++++++.+...   ..+.+-|. +
T Consensus       212 gki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq-k  290 (603)
T KOG0318|consen  212 GKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ-K  290 (603)
T ss_pred             ccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe-C
Confidence            99999994 577777776   8999999999999999999999999999999999999998876543   34566787 6


Q ss_pred             ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeee-----------eecc
Q 008467          370 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV-----------HDLR  438 (564)
Q Consensus       370 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~-----------~~~~  438 (564)
                      ..+++.+.+|+|..++.....+.+++.||...|+++..+|++++|.||+.||.|.-|+..++..-           ..+.
T Consensus       291 d~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~  370 (603)
T KOG0318|consen  291 DHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMA  370 (603)
T ss_pred             CeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEe
Confidence            77888999999999999988899999999999999999999999999999999999998655322           1122


Q ss_pred             ccc-ccEEEEEEc-------------------------------cCCC------------------------------CC
Q 008467          439 EHS-KEIYTIRWS-------------------------------PTGS------------------------------GT  456 (564)
Q Consensus       439 ~~~-~~i~~i~~~-------------------------------p~~~------------------------------~~  456 (564)
                      .+. +.+.++.|.                               +++.                              ..
T Consensus       371 ~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vA  450 (603)
T KOG0318|consen  371 ASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVA  450 (603)
T ss_pred             ecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEE
Confidence            222 222222221                               1100                              00


Q ss_pred             CCCCCcEEEEEEeCCCeEEEEeCCCCeE--EEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE-EEEe-c
Q 008467          457 NNPNQQLILASASFDSTVKLWDVELGKL--LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV-KTYT-G  532 (564)
Q Consensus       457 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~-~~~~-~  532 (564)
                      .+|+. ..++.|+.||.|+||.+..+..  ...+..|+.+|++++|||||.|||+|...+.|.+||+.+++.. ..+. +
T Consensus       451 v~~~~-~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FH  529 (603)
T KOG0318|consen  451 VSPDG-SEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFH  529 (603)
T ss_pred             EcCCC-CEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeee
Confidence            01222 2578899999999999986543  3345679999999999999999999999999999999988752 2233 4


Q ss_pred             CCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          533 NGGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       533 ~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      ...|.+++|+|+.+++|+|+.|-.|.||++.
T Consensus       530 takI~~~aWsP~n~~vATGSlDt~Viiysv~  560 (603)
T KOG0318|consen  530 TAKINCVAWSPNNKLVATGSLDTNVIIYSVK  560 (603)
T ss_pred             eeeEEEEEeCCCceEEEeccccceEEEEEcc
Confidence            5679999999999999999999999999986

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.6e-40  Score=290.63  Aligned_cols=279  Identities=20%  Similarity=0.375  Sum_probs=255.3

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCc----
Q 008467          274 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE----  348 (564)
Q Consensus       274 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~----  348 (564)
                      |...|.++.|++|.++|++++.||.+.|||.- ......++-...-|..++|+|.|+++++|+.|+...||++.+.    
T Consensus        54 H~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g  133 (343)
T KOG0286|consen   54 HLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEG  133 (343)
T ss_pred             cccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccc
Confidence            45679999999999999999999999999964 3444556666778999999999999999999999999999865    


Q ss_pred             --ceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECC-CCCEEEEEeCCCcEEE
Q 008467          349 --EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKI  425 (564)
Q Consensus       349 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~-~~~~las~s~dg~i~i  425 (564)
                        ...+.+..|.+-+.+..|.++..++++++|.+..+||+.+++.+..|.||.+.|.+++++| +++.++||+.|++.+|
T Consensus       134 ~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~akl  213 (343)
T KOG0286|consen  134 NVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKL  213 (343)
T ss_pred             cceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceee
Confidence              3456688899999999999999999999999999999999999999999999999999999 9999999999999999


Q ss_pred             EeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeC--CCCCEEEEEEcCC
Q 008467          426 WNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG--HREPVYSLAFSPT  503 (564)
Q Consensus       426 wd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--h~~~i~~~~~spd  503 (564)
                      ||++.+.+++.|.+|...|.+++|.|+|.         -+++||.|++.|+||++..+.+..+..  -..+|++++||..
T Consensus       214 WD~R~~~c~qtF~ghesDINsv~ffP~G~---------afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~S  284 (343)
T KOG0286|consen  214 WDVRSGQCVQTFEGHESDINSVRFFPSGD---------AFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKS  284 (343)
T ss_pred             eeccCcceeEeecccccccceEEEccCCC---------eeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEccc
Confidence            99999999999999999999999999986         589999999999999999888777653  2468999999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEEEecCC-CEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467          504 GEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLD  561 (564)
Q Consensus       504 g~~lasgs~dg~i~iw~~~~~~~~~~~~~~~-~i~~~~w~~~g~~la~~~~~~~v~v~~  561 (564)
                      |++|.+|..|.++.+||.-.++.+..+.++. .|.+|.-+|||..|++|+.|.+++||.
T Consensus       285 GRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  285 GRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             ccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            9999999999999999999999998888765 699999999999999999999999984

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.7e-42  Score=318.30  Aligned_cols=248  Identities=30%  Similarity=0.542  Sum_probs=222.3

Q ss_pred             CceeEccCCccceEEEEECCC--CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEEC
Q 008467          207 SDVTILEGHTSEVCACAWSPA--GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN  284 (564)
Q Consensus       207 ~~~~~l~~h~~~V~~~~~sp~--~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s  284 (564)
                      ..+.+|+||+..|.++.|+|.  +..||||+.||++++|++.+....             ..    ..+|...|..++|+
T Consensus       208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l-------------~~----l~gH~~RVs~VafH  270 (459)
T KOG0272|consen  208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPL-------------QD----LEGHLARVSRVAFH  270 (459)
T ss_pred             ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcch-------------hh----hhcchhhheeeeec
Confidence            345789999999999999997  568999999999999998764321             11    22345679999999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCc-eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEE
Q 008467          285 GEGTLLATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD  363 (564)
Q Consensus       285 ~~g~~l~sg~~dg~i~vw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~  363 (564)
                      |+|++|+|+++|.+-|+||+..+ ......+|..+|++++|+++|..++||+.|..-+|||++++.              
T Consensus       271 PsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr--------------  336 (459)
T KOG0272|consen  271 PSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR--------------  336 (459)
T ss_pred             CCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCc--------------
Confidence            99999999999999999998743 444567999999999999999999999999999999999865              


Q ss_pred             EEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeeccccccc
Q 008467          364 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE  443 (564)
Q Consensus       364 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~  443 (564)
                                                 .+..+.||..+|.+|+|+|+|-.|||||.|++++|||++....+..+.+|...
T Consensus       337 ---------------------------~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nl  389 (459)
T KOG0272|consen  337 ---------------------------CIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNL  389 (459)
T ss_pred             ---------------------------EEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccch
Confidence                                       34567889999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008467          444 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS  520 (564)
Q Consensus       444 i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~  520 (564)
                      |..++|+|...        .+|+|+|.|++++||..++..++.++.||.+.|.++.++|||.+|+|++.|.++++|.
T Consensus       390 VS~Vk~~p~~g--------~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  390 VSQVKYSPQEG--------YFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             hhheEecccCC--------eEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            99999999432        4899999999999999999999999999999999999999999999999999999995

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.9e-40  Score=298.62  Aligned_cols=297  Identities=31%  Similarity=0.509  Sum_probs=262.2

Q ss_pred             eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467          209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  288 (564)
Q Consensus       209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  288 (564)
                      ...+.||..+|+.+-|+|+-.++++++.|++|++||..+++...             ..    .+|.+.|..++|+..|+
T Consensus       101 ~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~-------------~L----rGHt~sv~di~~~a~Gk  163 (406)
T KOG0295|consen  101 VQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER-------------SL----RGHTDSVFDISFDASGK  163 (406)
T ss_pred             hhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh-------------hh----hccccceeEEEEecCcc
Confidence            45677899999999999999999999999999999998876421             12    23456699999999999


Q ss_pred             EEEEEeCCCeEEEEECCCc--eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEc
Q 008467          289 LLATGSYDGQARIWSTNGD--LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW  366 (564)
Q Consensus       289 ~l~sg~~dg~i~vw~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  366 (564)
                      ++++++.|=.+++|+.+..  ....+.+|.-.|.+++|-|.|.++++++.|.+|+.|++.++-+                
T Consensus       164 ~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~c----------------  227 (406)
T KOG0295|consen  164 YLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYC----------------  227 (406)
T ss_pred             EEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEeccccee----------------
Confidence            9999999999999998753  4456789999999999999999999999999999999988643                


Q ss_pred             CCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEE
Q 008467          367 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT  446 (564)
Q Consensus       367 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~  446 (564)
                                               +.+|.+|...|..++.+.||.++|+|+.|.++++|-+.++.+...++.|..+|-+
T Consensus       228 -------------------------v~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEc  282 (406)
T KOG0295|consen  228 -------------------------VKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVEC  282 (406)
T ss_pred             -------------------------EEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEE
Confidence                                     4567788889999999999999999999999999999999888899999999999


Q ss_pred             EEEccCCCCCC------CCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008467          447 IRWSPTGSGTN------NPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS  520 (564)
Q Consensus       447 i~~~p~~~~~~------~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~  520 (564)
                      ++|.|......      +.++..++.++|.|++||+||+.+|.++.++.+|...|..++|+|-|+||+++.+|+++++||
T Consensus       283 i~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwd  362 (406)
T KOG0295|consen  283 IAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWD  362 (406)
T ss_pred             EEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEE
Confidence            99998754221      122335899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEEecCCC-EEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          521 LKEGKIVKTYTGNGG-IFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       521 ~~~~~~~~~~~~~~~-i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      ++++.+++++..+.. ++.+.|+.+--++++|+-|-++.||.-|
T Consensus       363 l~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEcr  406 (406)
T KOG0295|consen  363 LKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  406 (406)
T ss_pred             eccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeecC
Confidence            999999999876544 7899999999999999999999999754

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.3e-38  Score=288.93  Aligned_cols=333  Identities=23%  Similarity=0.382  Sum_probs=283.8

Q ss_pred             CCceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC
Q 008467          206 NSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG  285 (564)
Q Consensus       206 ~~~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~  285 (564)
                      ...+..+.+|+.+|++++.+|+.+++||||.|..+.||++.++...                 ....+|...|+++.||.
T Consensus        54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~-----------------~eltgHKDSVt~~~Fsh  116 (399)
T KOG0296|consen   54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA-----------------GELTGHKDSVTCCSFSH  116 (399)
T ss_pred             ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcce-----------------eEecCCCCceEEEEEcc
Confidence            4456788999999999999999999999999999999999876421                 12245678899999999


Q ss_pred             CCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEE
Q 008467          286 EGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV  364 (564)
Q Consensus       286 ~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~  364 (564)
                      +|.+||||+.+|.|+||... +.....+...-..|.=++|+|.+..|++|+.||.+.+|.+..+...+.+..|..++..-
T Consensus       117 dgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G  196 (399)
T KOG0296|consen  117 DGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCG  196 (399)
T ss_pred             CceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccc
Confidence            99999999999999999975 44555665556677889999999999999999999999999988888899999888887


Q ss_pred             EcCC-CceEEEEeCCCeEEEEEcCCCceeeEecCCC-cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecc----
Q 008467          365 DWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR----  438 (564)
Q Consensus       365 ~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~----  438 (564)
                      .+.+ ..+++++..|++|++|+..++.|+..+.+.. .+..++.++..+..+++|+.++.+.+-+..+++.+....    
T Consensus       197 ~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~  276 (399)
T KOG0296|consen  197 EFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVP  276 (399)
T ss_pred             cccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCc
Confidence            7754 5678899999999999999999988877543 357889999999999999999999999998888887766    


Q ss_pred             ----cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCC
Q 008467          439 ----EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK  514 (564)
Q Consensus       439 ----~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg  514 (564)
                          .+...+.++.+.|....      -.+.|.|+.||+|.|||+...+..+.+ .|..+|..+.|-+ ..+|++++.+|
T Consensus       277 ~l~~~~e~~~esve~~~~ss~------lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w~~-t~~l~t~c~~g  348 (399)
T KOG0296|consen  277 ELKPSQEELDESVESIPSSSK------LPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLKWLN-TDYLLTACANG  348 (399)
T ss_pred             cccccchhhhhhhhhcccccc------cchhhcccccceEEEEecccchhheec-cCCCceEEEEEcC-cchheeeccCc
Confidence                34445566666654332      126889999999999999876655544 4889999999998 78999999999


Q ss_pred             cEEEEeCCCCeEEEEEecCC-CEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          515 SMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       515 ~i~iw~~~~~~~~~~~~~~~-~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      .|+.||.++|.++.+|.++. .|++++.+|+++++++++.|++..||++.
T Consensus       349 ~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  349 KVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             eEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            99999999999999999864 79999999999999999999999999863

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=6.9e-40  Score=325.28  Aligned_cols=300  Identities=28%  Similarity=0.498  Sum_probs=251.5

Q ss_pred             CccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEe
Q 008467          215 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS  294 (564)
Q Consensus       215 h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~  294 (564)
                      -...++|+.|++++++||-|-.|..|++|.+...+.              +..+.           .+|   ...+-+++
T Consensus       377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl--------------~~lk~-----------~~~---l~~~d~~s  428 (707)
T KOG0263|consen  377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKL--------------KKLKD-----------ASD---LSNIDTES  428 (707)
T ss_pred             cCCcceeEeecCCcchhhccccccEEEEEecchhhh--------------ccccc-----------hhh---hccccccc
Confidence            345789999999999999999999999999864221              11110           000   01122333


Q ss_pred             CCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCC-CceE
Q 008467          295 YDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NVSF  372 (564)
Q Consensus       295 ~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  372 (564)
                      .|-.+.+-|.+ +....++.+|.+||++++|+|+.++|+++|.|+++|+|.+.+..+.-.+..|..|+.++.|.+ ...|
T Consensus       429 ad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYF  508 (707)
T KOG0263|consen  429 ADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYF  508 (707)
T ss_pred             cchhhhhccccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEE
Confidence            34345555544 334456899999999999999999999999999999999999999999999999999999865 5678


Q ss_pred             EEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccC
Q 008467          373 ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT  452 (564)
Q Consensus       373 ~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~  452 (564)
                      ++++.|++.++|......|.+.|.||.+.|.|++|+|++.++|+||.|.++|+||..++..++.|.+|.++|.+++|+|.
T Consensus       509 atas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~  588 (707)
T KOG0263|consen  509 ATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPC  588 (707)
T ss_pred             EecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-------
Q 008467          453 GSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK-------  525 (564)
Q Consensus       453 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~-------  525 (564)
                      |.         +|++|+.||.|++||+.+++.+..+.+|.+.|+++.||.||..||+||.|.+|++||+..-.       
T Consensus       589 Gr---------~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~  659 (707)
T KOG0263|consen  589 GR---------YLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGH  659 (707)
T ss_pred             Cc---------eEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccc
Confidence            86         89999999999999999999999999999999999999999999999999999999986421       


Q ss_pred             -----------------EEEEEec-CCCEEEEEEccCCCEEEEE
Q 008467          526 -----------------IVKTYTG-NGGIFEVCWNKEGDKIAAC  551 (564)
Q Consensus       526 -----------------~~~~~~~-~~~i~~~~w~~~g~~la~~  551 (564)
                                       ++.+|.. ...+..|.|..-...|++|
T Consensus       660 ~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g  703 (707)
T KOG0263|consen  660 ISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG  703 (707)
T ss_pred             cccccccccccCCCCcceeeeeeecCceEEEEEEeccceeEEec
Confidence                             2333332 3456777787766555554

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.3e-37  Score=304.25  Aligned_cols=330  Identities=24%  Similarity=0.426  Sum_probs=278.6

Q ss_pred             eEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE
Q 008467          210 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL  289 (564)
Q Consensus       210 ~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~  289 (564)
                      ....||...|.++.|+.|.++|++||.|.++|||.+...+..           ..    ....+|...|-..-|..+...
T Consensus       139 r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~-----------~~----~~l~gHkd~VvacfF~~~~~~  203 (893)
T KOG0291|consen  139 RTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNL-----------FT----YALNGHKDYVVACFFGANSLD  203 (893)
T ss_pred             eeecCCccceeEEEeccCCceEEeccccceEEEEEecccccc-----------ce----EeccCCCcceEEEEeccCcce
Confidence            567899999999999999999999999999999998643210           01    123456778999999999999


Q ss_pred             EEEEeCCCeEEEEECC------------------------Cce-----------eEeecCCCCCEEEEEeCCCCCEEEEe
Q 008467          290 LATGSYDGQARIWSTN------------------------GDL-----------KCTLSKHKGPIFSLKWNKKGDYLLTG  334 (564)
Q Consensus       290 l~sg~~dg~i~vw~~~------------------------~~~-----------~~~~~~h~~~V~~l~~~~~~~~l~s~  334 (564)
                      +.+-+.||.+.+|..+                        +..           +.-+......|++.+|++..+.|++|
T Consensus       204 l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvg  283 (893)
T KOG0291|consen  204 LYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVG  283 (893)
T ss_pred             EEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEE
Confidence            9999999999999644                        111           11223334789999999999999999


Q ss_pred             eCCCcEEEEECCCcceeEEEeecccCeEEEEcC--CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCC
Q 008467          335 SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS  412 (564)
Q Consensus       335 s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~  412 (564)
                      -..|...+|.+....+++.+.....++..+.|.  .+...+.|+.=|.+.||......-+....||...++|++++|||+
T Consensus       284 FssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq  363 (893)
T KOG0291|consen  284 FSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQ  363 (893)
T ss_pred             ecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCc
Confidence            999999999999999999988888888888886  444444555668999999999888888899999999999999999


Q ss_pred             EEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC------------
Q 008467          413 LLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE------------  480 (564)
Q Consensus       413 ~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~------------  480 (564)
                      ++|||++||.|+|||..++-|..+|..|+..|+.+.|+..+.         .++++|.||+||.||+.            
T Consensus       364 ~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~---------~llssSLDGtVRAwDlkRYrNfRTft~P~  434 (893)
T KOG0291|consen  364 LIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGN---------VLLSSSLDGTVRAWDLKRYRNFRTFTSPE  434 (893)
T ss_pred             EEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCC---------EEEEeecCCeEEeeeecccceeeeecCCC
Confidence            999999999999999999999999999999999999998875         56777777777777753            


Q ss_pred             --------------------------------CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-eEE
Q 008467          481 --------------------------------LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG-KIV  527 (564)
Q Consensus       481 --------------------------------~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~-~~~  527 (564)
                                                      +|+.+-.+.||.+||.+++|+|+|..||+||.|.+|++|++-.. ..+
T Consensus       435 p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~v  514 (893)
T KOG0291|consen  435 PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTV  514 (893)
T ss_pred             ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCcee
Confidence                                            34444445689999999999999999999999999999998543 356


Q ss_pred             EEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          528 KTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       528 ~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      .+++....+.+++|+|||+.||++..||.+.+||..
T Consensus       515 Etl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~  550 (893)
T KOG0291|consen  515 ETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIK  550 (893)
T ss_pred             eeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhh
Confidence            677777889999999999999999999999999974

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.1e-37  Score=270.47  Aligned_cols=289  Identities=27%  Similarity=0.509  Sum_probs=236.4

Q ss_pred             eeEccCCccceEEEEECCC-CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC
Q 008467          209 VTILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG  287 (564)
Q Consensus       209 ~~~l~~h~~~V~~~~~sp~-~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g  287 (564)
                      ...+.+|++.|..++|||- |.+|||||.|..||||+...+.           .+..+...  ...|.+.|.+++|+|.|
T Consensus         7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~-----------s~~ck~vl--d~~hkrsVRsvAwsp~g   73 (312)
T KOG0645|consen    7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD-----------SWTCKTVL--DDGHKRSVRSVAWSPHG   73 (312)
T ss_pred             EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC-----------cEEEEEec--cccchheeeeeeecCCC
Confidence            4578899999999999998 8999999999999999976421           12223222  22567889999999999


Q ss_pred             CEEEEEeCCCeEEEEECCC---ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEE
Q 008467          288 TLLATGSYDGQARIWSTNG---DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV  364 (564)
Q Consensus       288 ~~l~sg~~dg~i~vw~~~~---~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~  364 (564)
                      ++|++|++|.++.||...+   ....++.+|...|.+++|+++|++|++|+.|++|.||.+..+.-              
T Consensus        74 ~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE--------------  139 (312)
T KOG0645|consen   74 RYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE--------------  139 (312)
T ss_pred             cEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc--------------
Confidence            9999999999999997653   35668899999999999999999999999999999998753321              


Q ss_pred             EcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCC---CCeeeeeccccc
Q 008467          365 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK---QDKYVHDLREHS  441 (564)
Q Consensus       365 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~---~~~~~~~~~~~~  441 (564)
                                              -..+..+.+|+..|..+.|+|...+|+|+|.|.+|++|+-.   ...++.++.+|.
T Consensus       140 ------------------------fec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~  195 (312)
T KOG0645|consen  140 ------------------------FECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHE  195 (312)
T ss_pred             ------------------------EEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCcc
Confidence                                    11345678899999999999999999999999999999865   446788999999


Q ss_pred             ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 008467          442 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL  521 (564)
Q Consensus       442 ~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~  521 (564)
                      ..|.++.|.|.|.         .|++++.|++|+||-..+.-.    .-|..+++.++|.  ...||+|+.|+.|++|.-
T Consensus       196 ~TVW~~~F~~~G~---------rl~s~sdD~tv~Iw~~~~~~~----~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~  260 (312)
T KOG0645|consen  196 NTVWSLAFDNIGS---------RLVSCSDDGTVSIWRLYTDLS----GMHSRALYDVPWD--NGVIASGGGDDAIRLFKE  260 (312)
T ss_pred             ceEEEEEecCCCc---------eEEEecCCcceEeeeeccCcc----hhcccceEeeeec--ccceEeccCCCEEEEEEe
Confidence            9999999999885         589999999999997552211    2377899999998  568999999999999987


Q ss_pred             CCCe------EEE--EEecCCCEEEEEEccC-CCEEEEEEcCCcEEEEEee
Q 008467          522 KEGK------IVK--TYTGNGGIFEVCWNKE-GDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       522 ~~~~------~~~--~~~~~~~i~~~~w~~~-g~~la~~~~~~~v~v~~~~  563 (564)
                      ..+-      ++.  ...+...|+++.|+|. .++|++|+.||.|.+|.+.
T Consensus       261 s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  261 SDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             cCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            6431      111  1112346999999995 6899999999999999874

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=7.3e-40  Score=300.82  Aligned_cols=278  Identities=25%  Similarity=0.481  Sum_probs=247.8

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCc-eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEE
Q 008467          275 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ  353 (564)
Q Consensus       275 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~  353 (564)
                      ...|..+.|.|+|+.|++|+..|...+|+...- ....+..|..+|.++.|+++|.+++||+.+|.|++|+..-..++..
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~  175 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKII  175 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHh
Confidence            356999999999999999999999999986432 2235678999999999999999999999999999999876555544


Q ss_pred             EeecccCeEEEEcC-CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCe
Q 008467          354 FEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK  432 (564)
Q Consensus       354 ~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~  432 (564)
                      ...|...+.++.+. ++..|++|+.|++|.+|+....++-..++||.-.|.|++|+|...+||+||.|..|++||.+++.
T Consensus       176 ~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~  255 (464)
T KOG0284|consen  176 QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS  255 (464)
T ss_pred             hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcc
Confidence            45555788888885 67899999999999999999988888999999999999999999999999999999999999999


Q ss_pred             eeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCC-CCEEEEEe
Q 008467          433 YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPT-GEYLASGS  511 (564)
Q Consensus       433 ~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spd-g~~lasgs  511 (564)
                      ++.++..|...|..+.|+|++.         +|+++|.|..++++|+++.+.++++++|...|+++.|+|- ..+|++|+
T Consensus       256 cl~tlh~HKntVl~~~f~~n~N---------~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg  326 (464)
T KOG0284|consen  256 CLATLHGHKNTVLAVKFNPNGN---------WLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGG  326 (464)
T ss_pred             hhhhhhhccceEEEEEEcCCCC---------eeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeecc
Confidence            9999999999999999999874         8999999999999999988889999999999999999995 46888999


Q ss_pred             CCCcEEEEeCCCCeEEEEE--ecCCCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467          512 LDKSMHIWSLKEGKIVKTY--TGNGGIFEVCWNKEGDKIAACFANHTVCVLD  561 (564)
Q Consensus       512 ~dg~i~iw~~~~~~~~~~~--~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~  561 (564)
                      .||.|..|.+...+.+...  ...+.|++++|+|-|-.||+|+.|.+++.|.
T Consensus       327 ~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~  378 (464)
T KOG0284|consen  327 SDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT  378 (464)
T ss_pred             CCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence            9999999999844444333  3456799999999999999999999999984

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.3e-38  Score=310.03  Aligned_cols=337  Identities=28%  Similarity=0.510  Sum_probs=272.6

Q ss_pred             ceeecCCc-eeEccC-CccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCe
Q 008467          201 SFEIPNSD-VTILEG-HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDV  278 (564)
Q Consensus       201 ~~~~~~~~-~~~l~~-h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V  278 (564)
                      .+.+|... +..++. |++||..++|+|.+.+||+||.|+.+++||+..+.+             ...+    .++.+.|
T Consensus        88 v~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~-------------th~f----kG~gGvV  150 (775)
T KOG0319|consen   88 VWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYC-------------THSF----KGHGGVV  150 (775)
T ss_pred             EEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEE-------------EEEe----cCCCceE
Confidence            34444432 345566 999999999999999999999999999999976421             2222    2446789


Q ss_pred             EEEEECCCCC--EEEEEeCCCeEEEEECCCc--eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEE-
Q 008467          279 TTLDWNGEGT--LLATGSYDGQARIWSTNGD--LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ-  353 (564)
Q Consensus       279 ~~l~~s~~g~--~l~sg~~dg~i~vw~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~-  353 (564)
                      .++.|+|+-+  +|++|+.|+.+++||....  +...+..|.+.|+++.|++++..+++++.|+.+.+||+..-+.... 
T Consensus       151 ssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~l  230 (775)
T KOG0319|consen  151 SSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTL  230 (775)
T ss_pred             EEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhhee
Confidence            9999999764  5899999999999998733  2456789999999999999999999999999999999743211000 


Q ss_pred             ----------------------------------Ee--------------------------------------------
Q 008467          354 ----------------------------------FE--------------------------------------------  355 (564)
Q Consensus       354 ----------------------------------~~--------------------------------------------  355 (564)
                                                        +.                                            
T Consensus       231 p~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~  310 (775)
T KOG0319|consen  231 PLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDE  310 (775)
T ss_pred             chhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEc
Confidence                                              00                                            


Q ss_pred             ----------------------------------------------------ecccCeEEEE-cCCCceEEEEeCCCeEE
Q 008467          356 ----------------------------------------------------FHSGPTLDVD-WRNNVSFATSSTDNMIY  382 (564)
Q Consensus       356 ----------------------------------------------------~~~~~~~~~~-~~~~~~~~~~~~d~~i~  382 (564)
                                                                          .|...+++++ |..+..+++++.|+++.
T Consensus       311 ~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svi  390 (775)
T KOG0319|consen  311 DELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVI  390 (775)
T ss_pred             cccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEE
Confidence                                                                0000111222 33334578899999999


Q ss_pred             EEEcCCC----ceeeEecCCCcceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCee-----e----eecccccccEEEEE
Q 008467          383 VCKIGEN----RPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKY-----V----HDLREHSKEIYTIR  448 (564)
Q Consensus       383 ~~~~~~~----~~~~~~~~h~~~i~~v~~~~~~-~~las~s~dg~i~iwd~~~~~~-----~----~~~~~~~~~i~~i~  448 (564)
                      +|.+.++    .++....||++.|.+++++..+ .+|+++|.|+++++|++...+.     +    .....|.+.|.+++
T Consensus       391 lWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Va  470 (775)
T KOG0319|consen  391 LWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVA  470 (775)
T ss_pred             EEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceE
Confidence            9988443    2566678999999999997654 6899999999999999875221     1    13457999999999


Q ss_pred             EccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 008467          449 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK  528 (564)
Q Consensus       449 ~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~  528 (564)
                      .+|+..         ++||||.|.+.+||+++....+.++.||+..|.++.|+|..+.|||+|.|++|+||.+.+..+++
T Consensus       471 ia~ndk---------LiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClk  541 (775)
T KOG0319|consen  471 IAPNDK---------LIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLK  541 (775)
T ss_pred             ecCCCc---------eEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeee
Confidence            999865         89999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCC-CEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          529 TYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       529 ~~~~~~-~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      ++.++. .|...+|-.+|+.|.+|.+||-+.|||++
T Consensus       542 T~eGH~~aVlra~F~~~~~qliS~~adGliKlWnik  577 (775)
T KOG0319|consen  542 TFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIK  577 (775)
T ss_pred             eecCccceeEeeeeeeCCcEEEeccCCCcEEEEecc
Confidence            999765 58999999999999999999999999986

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.5e-36  Score=298.65  Aligned_cols=327  Identities=24%  Similarity=0.447  Sum_probs=277.6

Q ss_pred             eEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE
Q 008467          210 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL  289 (564)
Q Consensus       210 ~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~  289 (564)
                      ..+......|+|++|||...+||+|-..|...+|.+++-..+             ...    ......|.+++|+..|.+
T Consensus       259 ~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~li-------------h~L----Sis~~~I~t~~~N~tGDW  321 (893)
T KOG0291|consen  259 HYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLI-------------HSL----SISDQKILTVSFNSTGDW  321 (893)
T ss_pred             eeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEE-------------EEe----ecccceeeEEEecccCCE
Confidence            344445578999999999999999999999999998753211             111    112356999999999999


Q ss_pred             EEEEeCC-CeEEEEECCCc-eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcC
Q 008467          290 LATGSYD-GQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR  367 (564)
Q Consensus       290 l~sg~~d-g~i~vw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  367 (564)
                      ||.|+.. |.+-||+.... .+...++|-..+.+++++|||+++++|+.||.|+|||..++-|..+|.-|...+..+.|.
T Consensus       322 iA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~  401 (893)
T KOG0291|consen  322 IAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFT  401 (893)
T ss_pred             EEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEE
Confidence            9998875 89999987643 445678999999999999999999999999999999999999999999999999999996


Q ss_pred             C-CceEEEEeCCCeEEEEEcCCCceeeEecCCCc-ceEEEEECCCCCEEEEEeCCC-cEEEEeCCCCeeeeecccccccE
Q 008467          368 N-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDV-TAKIWNMKQDKYVHDLREHSKEI  444 (564)
Q Consensus       368 ~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~-~i~~v~~~~~~~~las~s~dg-~i~iwd~~~~~~~~~~~~~~~~i  444 (564)
                      . ...+++++.||+|+.||+..-+..++|..... ...|++.+|.|.++..|+.|. .|.+|++++++.+..+.+|.++|
T Consensus       402 ~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPV  481 (893)
T KOG0291|consen  402 ARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPV  481 (893)
T ss_pred             ecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcc
Confidence            4 55678889999999999998888888876543 578999999999998888876 69999999999999999999999


Q ss_pred             EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-EEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 008467          445 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE  523 (564)
Q Consensus       445 ~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~  523 (564)
                      .+++|+|.+.         .|+|+|.|.+||+||+-... .+-++. +...++.++|+|||+-||+++.||.|.+||.+.
T Consensus       482 s~l~f~~~~~---------~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~  551 (893)
T KOG0291|consen  482 SGLSFSPDGS---------LLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKE  551 (893)
T ss_pred             eeeEEccccC---------eEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhh
Confidence            9999999986         79999999999999987543 334444 566799999999999999999999999999988


Q ss_pred             CeEEEEEec---------------------CCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          524 GKIVKTYTG---------------------NGGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       524 ~~~~~~~~~---------------------~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      +..+.+.++                     ....+.+++++||+.+.+|+....||+||++
T Consensus       552 ~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~  612 (893)
T KOG0291|consen  552 AVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVP  612 (893)
T ss_pred             ceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECc
Confidence            766644432                     1346789999999999999999999999986

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=7e-38  Score=283.04  Aligned_cols=289  Identities=26%  Similarity=0.470  Sum_probs=251.8

Q ss_pred             ecCCceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEE
Q 008467          204 IPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW  283 (564)
Q Consensus       204 ~~~~~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~  283 (564)
                      .|-...+++.||.+.|.|+++.|-..+|+||+.|++++|||+.+++...                 ...++-..|..+++
T Consensus       139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl-----------------tltGhi~~vr~vav  201 (460)
T KOG0285|consen  139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL-----------------TLTGHIETVRGVAV  201 (460)
T ss_pred             CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE-----------------eecchhheeeeeee
Confidence            3444457889999999999999999999999999999999999875211                 11234466899999


Q ss_pred             CCCCCEEEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeE
Q 008467          284 NGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL  362 (564)
Q Consensus       284 s~~g~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~  362 (564)
                      |+-..|+++++.|+.|+.||+.. +....+.+|-+.|++|+.+|.-..|++|+.|.++++||+++..             
T Consensus       202 S~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~-------------  268 (460)
T KOG0285|consen  202 SKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA-------------  268 (460)
T ss_pred             cccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc-------------
Confidence            99999999999999999999864 5566788999999999999999999999999999999998743             


Q ss_pred             EEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccc
Q 008467          363 DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK  442 (564)
Q Consensus       363 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~  442 (564)
                                                  .+.++.||.+.|..+.+.|....++|||.|++|++||+..++....+..|..
T Consensus       269 ----------------------------~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkk  320 (460)
T KOG0285|consen  269 ----------------------------SVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKK  320 (460)
T ss_pred             ----------------------------eEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccc
Confidence                                        4567889999999999999888999999999999999999999999999999


Q ss_pred             cEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 008467          443 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK  522 (564)
Q Consensus       443 ~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~  522 (564)
                      .+.+++.+|...         .+||+|.| .|+-|++..|..+..+.+|...|++++.+.|| ++++|++.|.|.+||.+
T Consensus       321 svral~lhP~e~---------~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwk  389 (460)
T KOG0285|consen  321 SVRALCLHPKEN---------LFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWK  389 (460)
T ss_pred             eeeEEecCCchh---------hhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecC
Confidence            999999998753         68888876 69999999999999999999999999998775 56789999999999999


Q ss_pred             CCeEEEEE---------ecCCCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467          523 EGKIVKTY---------TGNGGIFEVCWNKEGDKIAACFANHTVCVLD  561 (564)
Q Consensus       523 ~~~~~~~~---------~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~  561 (564)
                      +|...+..         ....+|+..||+..|.+|.+|..|++|.+|.
T Consensus       390 sg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k  437 (460)
T KOG0285|consen  390 SGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK  437 (460)
T ss_pred             cCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence            88543332         3356799999999999999999999999984

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=9e-39  Score=293.65  Aligned_cols=282  Identities=26%  Similarity=0.480  Sum_probs=250.9

Q ss_pred             ccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeC
Q 008467          216 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY  295 (564)
Q Consensus       216 ~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~  295 (564)
                      +.+|..+.|.|+|+.|++|+..|...+|+...-                 .+......|..+|.++.|+++|.+++||+.
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f-----------------nFEtilQaHDs~Vr~m~ws~~g~wmiSgD~  158 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF-----------------NFETILQAHDSPVRTMKWSHNGTWMISGDK  158 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCcee-----------------eHHHHhhhhcccceeEEEccCCCEEEEcCC
Confidence            457999999999999999999999999986321                 112223456789999999999999999999


Q ss_pred             CCeEEEEECCCceeEeecCCC-CCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCc-eEE
Q 008467          296 DGQARIWSTNGDLKCTLSKHK-GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV-SFA  373 (564)
Q Consensus       296 dg~i~vw~~~~~~~~~~~~h~-~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  373 (564)
                      +|.|++|+.+-..+..+..|. ..|.+++|+|+...|++||.||+|+|||....+-...+..|.-.+.+++|++.. .++
T Consensus       159 gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLia  238 (464)
T KOG0284|consen  159 GGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIA  238 (464)
T ss_pred             CceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeE
Confidence            999999998877666666655 899999999999999999999999999998877777788999999999998765 567


Q ss_pred             EEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCC
Q 008467          374 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG  453 (564)
Q Consensus       374 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~  453 (564)
                      +++.|+.|.+||-+++.++.++.+|...|..+.|+|++++|+|+|.|..++++|+++.+.+..+++|...++++.|+|..
T Consensus       239 sgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~  318 (464)
T KOG0284|consen  239 SGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLN  318 (464)
T ss_pred             EccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeecccccc
Confidence            88999999999999999999999999999999999999999999999999999999888899999999999999999976


Q ss_pred             CCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEE-eCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 008467          454 SGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK  522 (564)
Q Consensus       454 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~  522 (564)
                      .        .+|.+|+.||.|..|.+...+.+..+ .+|...|++++|+|-|..||+|+.|.++++|...
T Consensus       319 ~--------~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  319 E--------SLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             c--------cceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence            4        37999999999999999855555544 5789999999999999999999999999999864

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=5.2e-37  Score=269.14  Aligned_cols=245  Identities=29%  Similarity=0.508  Sum_probs=209.6

Q ss_pred             eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467          209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  288 (564)
Q Consensus       209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  288 (564)
                      ++.+.||...|..++.+++|++.++||.|+++|+||+.+++.             .+.+    .+|.++|++++|++|.+
T Consensus        56 ~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~-------------t~~f----~GH~~dVlsva~s~dn~  118 (315)
T KOG0279|consen   56 VRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGES-------------TRRF----VGHTKDVLSVAFSTDNR  118 (315)
T ss_pred             eeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcE-------------EEEE----EecCCceEEEEecCCCc
Confidence            567899999999999999999999999999999999987642             1222    24578999999999999


Q ss_pred             EEEEEeCCCeEEEEECCCceeEeecCC--CCCEEEEEeCCC--CCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEE
Q 008467          289 LLATGSYDGQARIWSTNGDLKCTLSKH--KGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV  364 (564)
Q Consensus       289 ~l~sg~~dg~i~vw~~~~~~~~~~~~h--~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~  364 (564)
                      .+++|+.|.+|++|++-|.++.++..+  ++-|.+++|+|+  ..+|+++|.|++|++||+++.+..             
T Consensus       119 qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~-------------  185 (315)
T KOG0279|consen  119 QIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLR-------------  185 (315)
T ss_pred             eeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchh-------------
Confidence            999999999999999999888877655  788999999998  678999999999999999875432             


Q ss_pred             EcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccE
Q 008467          365 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEI  444 (564)
Q Consensus       365 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i  444 (564)
                                                  ..|.||++.++.+++||||.++++|+.||.+.+||++.++.+..+ .|...|
T Consensus       186 ----------------------------~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl-~a~~~v  236 (315)
T KOG0279|consen  186 ----------------------------TTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL-EAFDIV  236 (315)
T ss_pred             ----------------------------hccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec-cCCCeE
Confidence                                        356789999999999999999999999999999999999987765 577899


Q ss_pred             EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCC---------CCCEEEEEEcCCCCEEEEEeCCCc
Q 008467          445 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH---------REPVYSLAFSPTGEYLASGSLDKS  515 (564)
Q Consensus       445 ~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h---------~~~i~~~~~spdg~~lasgs~dg~  515 (564)
                      .+++|+|+.         +.|+. ..+..|+|||++++.++.+++..         .....+++||+||..|.+|-.|+.
T Consensus       237 ~sl~fspnr---------ywL~~-at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~  306 (315)
T KOG0279|consen  237 NSLCFSPNR---------YWLCA-ATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNV  306 (315)
T ss_pred             eeEEecCCc---------eeEee-ccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCc
Confidence            999999975         24544 44566999999999888766421         123567899999999999999999


Q ss_pred             EEEEeCC
Q 008467          516 MHIWSLK  522 (564)
Q Consensus       516 i~iw~~~  522 (564)
                      |++|.+.
T Consensus       307 irv~qv~  313 (315)
T KOG0279|consen  307 IRVWQVA  313 (315)
T ss_pred             EEEEEee
Confidence            9999875

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2.6e-36  Score=260.35  Aligned_cols=278  Identities=26%  Similarity=0.470  Sum_probs=238.6

Q ss_pred             CEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC--
Q 008467          229 SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG--  306 (564)
Q Consensus       229 ~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~--  306 (564)
                      -+|+|+|.|.+||+|...+|.+..+          +++       ....|..+...|++.+||.|+. -.||+||++.  
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rT----------iqh-------~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~n   72 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRT----------IQH-------PDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNN   72 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEE----------Eec-------CccceeeEEEcCCcchhhhccC-CeeEEEEccCCC
Confidence            4799999999999999988865322          111       2467999999999999998875 6899999763  


Q ss_pred             -ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCC-CceEEEEeCCCeEEEE
Q 008467          307 -DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NVSFATSSTDNMIYVC  384 (564)
Q Consensus       307 -~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~~~  384 (564)
                       ..+.++.+|+..|+++.|..+|+++++||.||+++|||++...+.+.|... .++.++...+ ...++++..+|.|++|
T Consensus        73 p~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~-spVn~vvlhpnQteLis~dqsg~irvW  151 (311)
T KOG0315|consen   73 PNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN-SPVNTVVLHPNQTELISGDQSGNIRVW  151 (311)
T ss_pred             CCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC-CCcceEEecCCcceEEeecCCCcEEEE
Confidence             367899999999999999999999999999999999999997777766655 7788877754 4678999999999999


Q ss_pred             EcCCCceeeEec-CCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCC------eeeeecccccccEEEEEEccCCCCCC
Q 008467          385 KIGENRPIKTFA-GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD------KYVHDLREHSKEIYTIRWSPTGSGTN  457 (564)
Q Consensus       385 ~~~~~~~~~~~~-~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~------~~~~~~~~~~~~i~~i~~~p~~~~~~  457 (564)
                      |+.+......+. ...-.|.++...|||++++.+...|...+|++-+.      .++..+++|.+-+....++|++.   
T Consensus       152 Dl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k---  228 (311)
T KOG0315|consen  152 DLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVK---  228 (311)
T ss_pred             EccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCc---
Confidence            999876544443 33457999999999999999999999999998654      35677889999999999999986   


Q ss_pred             CCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCC
Q 008467          458 NPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG  534 (564)
Q Consensus       458 ~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~  534 (564)
                            +||++|.|.+++||+.+.. +.-..+.+|...+...+||.||+||+||+.|+.+++|++..++.++.|.++.
T Consensus       229 ------~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~  300 (311)
T KOG0315|consen  229 ------YLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHH  300 (311)
T ss_pred             ------EEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcc
Confidence                  8999999999999999877 5556788999999999999999999999999999999999999999998754

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=3.1e-35  Score=278.51  Aligned_cols=353  Identities=23%  Similarity=0.354  Sum_probs=266.0

Q ss_pred             CCCCccccccCCccce---eecC-CceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEE
Q 008467          187 GPEPMDIATTSASESF---EIPN-SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVL  262 (564)
Q Consensus       187 ~~~~~~~~~~~~~~~~---~~~~-~~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~  262 (564)
                      +..|+.+.+.+.....   +=|+ .....++.|..-|+|+.|+|||+++||.|.||++.|||=.++....          
T Consensus       157 psRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg----------  226 (603)
T KOG0318|consen  157 PSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVG----------  226 (603)
T ss_pred             CCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEE----------
Confidence            3345555554443322   2233 2235678899999999999999999999999999999966654221          


Q ss_pred             EEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCc-----------------------------------
Q 008467          263 VLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD-----------------------------------  307 (564)
Q Consensus       263 ~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~-----------------------------------  307 (564)
                         .+. ....|.+.|.+++|+||++.++|++.|.+++|||+...                                   
T Consensus       227 ---~l~-~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~i  302 (603)
T KOG0318|consen  227 ---ELE-DSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTI  302 (603)
T ss_pred             ---Eec-CCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEE
Confidence               111 13456788999999999999999999999999985311                                   


Q ss_pred             ---------eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEE-eecccCeEEEEcCCCceEEEEeC
Q 008467          308 ---------LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF-EFHSGPTLDVDWRNNVSFATSST  377 (564)
Q Consensus       308 ---------~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  377 (564)
                               ....+.+|..+|++|..+|++++|++|+.||.|.-||..++..-+.. ..|...+..+.-.....+.+++.
T Consensus       303 n~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~  382 (603)
T KOG0318|consen  303 NYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGW  382 (603)
T ss_pred             EEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEec
Confidence                     01234589999999999999999999999999999999877644332 45666666666666566777777


Q ss_pred             CCeEEEEEcCCC------------ce-------------------eeEecCCC--------cceEEEEECCCCCEEEEEe
Q 008467          378 DNMIYVCKIGEN------------RP-------------------IKTFAGHQ--------GEVNCVKWDPTGSLLASCS  418 (564)
Q Consensus       378 d~~i~~~~~~~~------------~~-------------------~~~~~~h~--------~~i~~v~~~~~~~~las~s  418 (564)
                      |.++++.++..+            +|                   +..++.+.        -...+++++|+++.+|.|+
T Consensus       383 Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG  462 (603)
T KOG0318|consen  383 DDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGG  462 (603)
T ss_pred             CCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEec
Confidence            777777655321            11                   11122222        1356899999999999999


Q ss_pred             CCCcEEEEeCCCCeee--eecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE-EEeCCCCCE
Q 008467          419 DDVTAKIWNMKQDKYV--HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY-SLNGHREPV  495 (564)
Q Consensus       419 ~dg~i~iwd~~~~~~~--~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~h~~~i  495 (564)
                      .|+.++||.+......  .....|.++|++++|+|++.         +||+|...+.|.+||+.+.+... .+.-|...|
T Consensus       463 ~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~---------yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI  533 (603)
T KOG0318|consen  463 QDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGA---------YLAAGDASRKVVLYDVASREVKTNRWAFHTAKI  533 (603)
T ss_pred             ccceEEEEEecCCcccceeeeecccCCceEEEECCCCc---------EEEEeccCCcEEEEEcccCceecceeeeeeeeE
Confidence            9999999999876543  23557999999999999986         89999999999999999877633 344489999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-EEEEE-ecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          496 YSLAFSPTGEYLASGSLDKSMHIWSLKEGK-IVKTY-TGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       496 ~~~~~spdg~~lasgs~dg~i~iw~~~~~~-~~~~~-~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      ++++|||+..++||||.|-.|.||+++.-. .+..- .+..+++.+.|-.+. .|++.+.|..|++|++.
T Consensus       534 ~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~-tvvSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  534 NCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDES-TVVSSGQDANIKVWNVT  602 (603)
T ss_pred             EEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEecCc-eEEeccCcceeEEeccc
Confidence            999999999999999999999999997643 22221 234569999996555 55555689999999974

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.2e-36  Score=299.13  Aligned_cols=343  Identities=22%  Similarity=0.338  Sum_probs=283.3

Q ss_pred             eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCC--------------------------C-CCCceE
Q 008467          209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGA--------------------------Q-NGPLNV  261 (564)
Q Consensus       209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~--------------------------~-~~~~~~  261 (564)
                      ..++.+|.+.|++++|++|+..++++|.|..+.|||+.+.+.....                          . .+....
T Consensus       185 l~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~  264 (775)
T KOG0319|consen  185 LHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQY  264 (775)
T ss_pred             HHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEE
Confidence            5677899999999999999999999999999999998532110000                          0 000000


Q ss_pred             ----------------------------------------EEEE-----eeccccccCCCCeEEEEE-CCCCCEEEEEeC
Q 008467          262 ----------------------------------------LVLK-----HVKGRTNEKSKDVTTLDW-NGEGTLLATGSY  295 (564)
Q Consensus       262 ----------------------------------------~~~~-----~~~~~~~~~~~~V~~l~~-s~~g~~l~sg~~  295 (564)
                                                              +.+.     .......+.+..|..++| .|+.++||.++.
T Consensus       265 ~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATN  344 (775)
T KOG0319|consen  265 WDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATN  344 (775)
T ss_pred             EecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeC
Confidence                                                    0000     001112234566778865 567899999999


Q ss_pred             CCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCc----ceeEEEeecccCeEEEEcC--CC
Q 008467          296 DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE----EWKQQFEFHSGPTLDVDWR--NN  369 (564)
Q Consensus       296 dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~--~~  369 (564)
                      .+.+|+++..+.....+.+|+..|.++....+|.+|+|||.|+++++|-++.+    .+......|...+..+...  ..
T Consensus       345 s~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~a  424 (775)
T KOG0319|consen  345 SPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGA  424 (775)
T ss_pred             CCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCc
Confidence            99999999887777789999999999996667789999999999999977433    2344566777777776653  34


Q ss_pred             ceEEEEeCCCeEEEEEcCCCce-----ee----EecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccc
Q 008467          370 VSFATSSTDNMIYVCKIGENRP-----IK----TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH  440 (564)
Q Consensus       370 ~~~~~~~~d~~i~~~~~~~~~~-----~~----~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~  440 (564)
                      ..|+++|.|.++.+|++...++     +.    +...|...|+|++++|+.+++||||.|.+.+||++........+.+|
T Consensus       425 sffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH  504 (775)
T KOG0319|consen  425 SFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGH  504 (775)
T ss_pred             cEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCC
Confidence            5789999999999999976321     11    23579999999999999999999999999999999999999999999


Q ss_pred             cccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008467          441 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS  520 (564)
Q Consensus       441 ~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~  520 (564)
                      ...+.++.|+|...         +++|+|.|++|+||.+.+..|+.++.||+..|..+.|-.+|+.|++|+.||.|++|+
T Consensus       505 ~RGvw~V~Fs~~dq---------~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWn  575 (775)
T KOG0319|consen  505 TRGVWCVSFSKNDQ---------LLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWN  575 (775)
T ss_pred             ccceEEEEeccccc---------eeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEe
Confidence            99999999999754         799999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEEecC-CCEEEEEEccCCCEEEEEEcCCcEEEE
Q 008467          521 LKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVL  560 (564)
Q Consensus       521 ~~~~~~~~~~~~~-~~i~~~~w~~~g~~la~~~~~~~v~v~  560 (564)
                      ++++.++++++.+ ..|++++-++.+.++++|++||.+.+|
T Consensus       576 ikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~w  616 (775)
T KOG0319|consen  576 IKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFW  616 (775)
T ss_pred             ccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEe
Confidence            9999999999875 469999999999999999999999998

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=5.6e-36  Score=265.25  Aligned_cols=278  Identities=24%  Similarity=0.438  Sum_probs=245.9

Q ss_pred             ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCcee--EeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcc
Q 008467          272 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLK--CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE  349 (564)
Q Consensus       272 ~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~--~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~  349 (564)
                      ..+.+.|..+.|+|+|.+||||+.|..|.+|++.+...  ..+.+|.++|..+.|.++++.+++++.|++++.||+++|+
T Consensus        44 ~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~  123 (338)
T KOG0265|consen   44 PGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGK  123 (338)
T ss_pred             CCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccce
Confidence            45678899999999999999999999999999877544  4678999999999999999999999999999999999999


Q ss_pred             eeEEEeecccCeEEEEcC--CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEe
Q 008467          350 WKQQFEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN  427 (564)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd  427 (564)
                      ....+..|..-+..++..  +...+.+++.|+++++||++...+++++. ..-.++++.|..++..+.+|+-|+.|++||
T Consensus       124 ~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd  202 (338)
T KOG0265|consen  124 RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWD  202 (338)
T ss_pred             eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCceeeec
Confidence            999999998887777653  33456788899999999999888887764 345789999999999999999999999999


Q ss_pred             CCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC----CeEEEEEeCCCC----CEEEEE
Q 008467          428 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL----GKLLYSLNGHRE----PVYSLA  499 (564)
Q Consensus       428 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~----~~~~~~~~~h~~----~i~~~~  499 (564)
                      ++.....+.+++|..+|+.+..+|.|.         ++.+-++|.++++||++-    .+++..+.+|..    .....+
T Consensus       203 ~r~~d~~~~lsGh~DtIt~lsls~~gs---------~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cs  273 (338)
T KOG0265|consen  203 LRKNDGLYTLSGHADTITGLSLSRYGS---------FLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCS  273 (338)
T ss_pred             cccCcceEEeecccCceeeEEeccCCC---------ccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceee
Confidence            999999999999999999999999986         688999999999999873    455777766542    346679


Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC-CCEEEEEEccCCCEEEEEEcCCcEEE
Q 008467          500 FSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCV  559 (564)
Q Consensus       500 ~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~-~~i~~~~w~~~g~~la~~~~~~~v~v  559 (564)
                      |||+++++.+|+.|+.+++||.....++-.++++ +.|..+.|+|.-..|..|+.|+++.+
T Consensus       274 wsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l  334 (338)
T KOG0265|consen  274 WSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL  334 (338)
T ss_pred             ccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence            9999999999999999999999988888888876 45899999999999999999999875

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.3e-37  Score=309.19  Aligned_cols=270  Identities=28%  Similarity=0.483  Sum_probs=240.3

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEE
Q 008467          275 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF  354 (564)
Q Consensus       275 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  354 (564)
                      ...|+|..|++|+.+||.|-.|..|++|.........++.-       .+   -..+=+.+.|-.+.+-|.........+
T Consensus       378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~-------~~---l~~~d~~sad~~~~~~D~~~~~~~~~L  447 (707)
T KOG0263|consen  378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDA-------SD---LSNIDTESADVDVDMLDDDSSGTSRTL  447 (707)
T ss_pred             CCcceeEeecCCcchhhccccccEEEEEecchhhhccccch-------hh---hccccccccchhhhhccccCCceeEEe
Confidence            46799999999999999999999999999765432222211       11   112334566666888888888888889


Q ss_pred             eecccCeEEEEcCCCceE-EEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCee
Q 008467          355 EFHSGPTLDVDWRNNVSF-ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY  433 (564)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~-~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~  433 (564)
                      ..|.+||+...+.++..| ++|+.|.++++|.+.+...+..++||..+|..+.|+|.|-++||||.|++.++|......+
T Consensus       448 ~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~P  527 (707)
T KOG0263|consen  448 YGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKP  527 (707)
T ss_pred             ecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCc
Confidence            999999999999877655 7888999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC
Q 008467          434 VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD  513 (564)
Q Consensus       434 ~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~d  513 (564)
                      .+.+.+|...+.|+.|+|+..         ++++||.|.+||+||+.+|..+..+.||.++|.+++|||+|++||+|+.|
T Consensus       528 lRifaghlsDV~cv~FHPNs~---------Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed  598 (707)
T KOG0263|consen  528 LRIFAGHLSDVDCVSFHPNSN---------YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDED  598 (707)
T ss_pred             hhhhcccccccceEEECCccc---------ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccC
Confidence            999999999999999999875         89999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEeCCCCeEEEEEecCC-CEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          514 KSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       514 g~i~iw~~~~~~~~~~~~~~~-~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      |.|+|||+.+|+++..+.++. .|++++|+.||+.||+|+.|.+|.+||+.
T Consensus       599 ~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~  649 (707)
T KOG0263|consen  599 GLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT  649 (707)
T ss_pred             CcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence            999999999999998887654 58999999999999999999999999986

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=5.1e-35  Score=321.27  Aligned_cols=288  Identities=21%  Similarity=0.416  Sum_probs=232.5

Q ss_pred             cCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC-CCCEEE
Q 008467          213 EGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGTLLA  291 (564)
Q Consensus       213 ~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~l~  291 (564)
                      .+|...|++++|+|+|++||||+.|+.|+||++............+    .. ..     .....|.+++|++ ++.+|+
T Consensus       480 ~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~----~~-~~-----~~~~~v~~l~~~~~~~~~la  549 (793)
T PLN00181        480 LNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYP----VV-EL-----ASRSKLSGICWNSYIKSQVA  549 (793)
T ss_pred             cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccc----eE-Ee-----cccCceeeEEeccCCCCEEE
Confidence            4589999999999999999999999999999975421110000000    00 01     1235689999987 578999


Q ss_pred             EEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCC-CCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCC
Q 008467          292 TGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN  369 (564)
Q Consensus       292 sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  369 (564)
                      +++.||.|++||.. +.....+.+|.++|++++|+| ++.+|++|+.|++|++||++++.....                
T Consensus       550 s~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~----------------  613 (793)
T PLN00181        550 SSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT----------------  613 (793)
T ss_pred             EEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEE----------------
Confidence            99999999999976 556677889999999999997 788999999999999999987643322                


Q ss_pred             ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEEC-CCCCEEEEEeCCCcEEEEeCCCCe-eeeecccccccEEEE
Q 008467          370 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWD-PTGSLLASCSDDVTAKIWNMKQDK-YVHDLREHSKEIYTI  447 (564)
Q Consensus       370 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~-~~~~~las~s~dg~i~iwd~~~~~-~~~~~~~~~~~i~~i  447 (564)
                                               +..+ ..|.++.|+ +++.+|++|+.||.|++||+++.+ .+..+.+|...|.++
T Consensus       614 -------------------------~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v  667 (793)
T PLN00181        614 -------------------------IKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYV  667 (793)
T ss_pred             -------------------------EecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEE
Confidence                                     2222 357788884 579999999999999999998765 466778999999999


Q ss_pred             EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC------CeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 008467          448 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL------GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL  521 (564)
Q Consensus       448 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~------~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~  521 (564)
                      .|.+ +.         +|++++.|++|+|||+..      ..++..+.+|...+.+++|+|++.+||+|+.|+.|++|+.
T Consensus       668 ~f~~-~~---------~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~  737 (793)
T PLN00181        668 RFVD-SS---------TLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHK  737 (793)
T ss_pred             EEeC-CC---------EEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEEC
Confidence            9963 22         689999999999999974      3567889999999999999999999999999999999998


Q ss_pred             CCCeEEEEEe--------------cCCCEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467          522 KEGKIVKTYT--------------GNGGIFEVCWNKEGDKIAACFANHTVCVLDF  562 (564)
Q Consensus       522 ~~~~~~~~~~--------------~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~  562 (564)
                      .....+..+.              ....|.+++|+++|+.|++|+.+|.|.||++
T Consensus       738 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        738 AFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             CCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            7665443332              1234889999999999999999999999985

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.5e-35  Score=277.22  Aligned_cols=277  Identities=29%  Similarity=0.591  Sum_probs=249.2

Q ss_pred             cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC
Q 008467          217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD  296 (564)
Q Consensus       217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d  296 (564)
                      ..|++++||.+|..||+|+.||.+|||+......                  .....|.++|.++.|+..|++|++++.|
T Consensus       236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~------------------~tl~~HkgPI~slKWnk~G~yilS~~vD  297 (524)
T KOG0273|consen  236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLI------------------STLGQHKGPIFSLKWNKKGTYILSGGVD  297 (524)
T ss_pred             CCcceEEecCCCCeEEEeecCcEEEEEecCchhh------------------hhhhccCCceEEEEEcCCCCEEEeccCC
Confidence            5799999999999999999999999999754321                  1123467899999999999999999999


Q ss_pred             CeEEEEEC-CCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCC-ceEEE
Q 008467          297 GQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFAT  374 (564)
Q Consensus       297 g~i~vw~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  374 (564)
                      |++.+||. .|.....+.-|..+-..+.|-.+ .-|++++.|+.|+++-+.....+.++..|.+++..+.|.+. ..+++
T Consensus       298 ~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS  376 (524)
T KOG0273|consen  298 GTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLAS  376 (524)
T ss_pred             ccEEEEeccCceEEEeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEE
Confidence            99999996 46677788889998788899754 56899999999999999888889999999999999999754 56789


Q ss_pred             EeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCC---------CEEEEEeCCCcEEEEeCCCCeeeeecccccccEE
Q 008467          375 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG---------SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY  445 (564)
Q Consensus       375 ~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~---------~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~  445 (564)
                      |+.|+++++|..+....+..|.+|..+|..+.|+|+|         ..+++++.|++|++||...+.+++.|..|+.+|+
T Consensus       377 ~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVy  456 (524)
T KOG0273|consen  377 CSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVY  456 (524)
T ss_pred             ecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceE
Confidence            9999999999999999999999999999999999975         4689999999999999999999999999999999


Q ss_pred             EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 008467          446 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK  522 (564)
Q Consensus       446 ~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~  522 (564)
                      +++|+|+|.         ++|+|+.||.|.||++++++.+++..+. ..|..++|+.+|.+|..+-.|+.+++-|++
T Consensus       457 svafS~~g~---------ylAsGs~dg~V~iws~~~~~l~~s~~~~-~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  457 SVAFSPNGR---------YLASGSLDGCVHIWSTKTGKLVKSYQGT-GGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             EEEecCCCc---------EEEecCCCCeeEeccccchheeEeecCC-CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            999999986         8999999999999999999999888754 569999999999999999999999998875

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=6.7e-35  Score=282.08  Aligned_cols=285  Identities=36%  Similarity=0.621  Sum_probs=250.6

Q ss_pred             eEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE
Q 008467          210 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL  289 (564)
Q Consensus       210 ~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~  289 (564)
                      ..+.+|..+|.+++|+|++++|++|+.||.+++|++.++..             ....    ..+...+..+.|++++++
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~-------------~~~~----~~~~~~i~~~~~~~~~~~   65 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL-------------LRTL----KGHTGPVRDVAASADGTY   65 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc-------------EEEE----ecCCcceeEEEECCCCCE
Confidence            35678999999999999999999999999999999875431             0111    123456889999999999


Q ss_pred             EEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCC
Q 008467          290 LATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN  368 (564)
Q Consensus       290 l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  368 (564)
                      +++++.+|.+++|+... .....+..|...|.++.|++++.++++++.|+.+.+||+.+++....+..+...+..+.|.+
T Consensus        66 l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~  145 (289)
T cd00200          66 LASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP  145 (289)
T ss_pred             EEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcC
Confidence            99999999999999875 56667788999999999999988888888899999999998888888887888899999987


Q ss_pred             CceEEEE-eCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEE
Q 008467          369 NVSFATS-STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI  447 (564)
Q Consensus       369 ~~~~~~~-~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i  447 (564)
                      +..++.+ +.++.+++|++...+++..+..|...+.+++|+|+++.+++++.|+.+++||++.++.+..+..|...+.++
T Consensus       146 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~  225 (289)
T cd00200         146 DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSV  225 (289)
T ss_pred             cCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEE
Confidence            5555544 459999999999888888999999999999999999999999999999999999988888888899999999


Q ss_pred             EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008467          448 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS  520 (564)
Q Consensus       448 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~  520 (564)
                      .|+|++.         ++++++.||.|++||+.+++.+..+..|...|.+++|+|++++|++++.||.|++|+
T Consensus       226 ~~~~~~~---------~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         226 AFSPDGY---------LLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             EEcCCCc---------EEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            9999743         677787899999999999999988989999999999999999999999999999996

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.2e-35  Score=301.64  Aligned_cols=289  Identities=28%  Similarity=0.523  Sum_probs=248.6

Q ss_pred             eeEccC-CccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC
Q 008467          209 VTILEG-HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG  287 (564)
Q Consensus       209 ~~~l~~-h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g  287 (564)
                      ...+.+ |...|.++.|+|+|++|++++.|+.+++|+..+...               ........|...|..++|+|+|
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~---------------~~~~~l~~h~~~v~~~~fs~d~  215 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS---------------NLLRELSGHTRGVSDVAFSPDG  215 (456)
T ss_pred             eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc---------------hhhccccccccceeeeEECCCC
Confidence            344444 478999999999999999999999999999854331               0001113456789999999999


Q ss_pred             CEEEEEeCCCeEEEEEC-CC-ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEE
Q 008467          288 TLLATGSYDGQARIWST-NG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD  365 (564)
Q Consensus       288 ~~l~sg~~dg~i~vw~~-~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~  365 (564)
                      .++++|+.|++++||+. .. ....++.+|...|++++|+|+|+.+++|+.|++|+|||+++++                
T Consensus       216 ~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~----------------  279 (456)
T KOG0266|consen  216 SYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE----------------  279 (456)
T ss_pred             cEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe----------------
Confidence            99999999999999998 33 5778899999999999999999999999999999999998754                


Q ss_pred             cCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCe--eeeeccccccc
Q 008467          366 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK--YVHDLREHSKE  443 (564)
Q Consensus       366 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~--~~~~~~~~~~~  443 (564)
                                               ++..+.+|.+.|++++|++++++|++++.|+.|+|||+.++.  ++..+..+...
T Consensus       280 -------------------------~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~  334 (456)
T KOG0266|consen  280 -------------------------CVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENS  334 (456)
T ss_pred             -------------------------EEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCC
Confidence                                     345677899999999999999999999999999999999998  56777766555


Q ss_pred             --EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCC---EEEEEEcCCCCEEEEEeCCCcEEE
Q 008467          444 --IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREP---VYSLAFSPTGEYLASGSLDKSMHI  518 (564)
Q Consensus       444 --i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~---i~~~~~spdg~~lasgs~dg~i~i  518 (564)
                        +++++|+|++.         ++++++.|+.+++||+..+.++..+.+|...   +.+..+++.|.++++|+.|+.|++
T Consensus       335 ~~~~~~~fsp~~~---------~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~  405 (456)
T KOG0266|consen  335 APVTSVQFSPNGK---------YLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYV  405 (456)
T ss_pred             CceeEEEECCCCc---------EEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEE
Confidence              99999999886         7899999999999999999999999988764   455567889999999999999999


Q ss_pred             EeCCCCeEEEEEecC--CCEEEEEEccCCCEEEEEE--cCCcEEEEEe
Q 008467          519 WSLKEGKIVKTYTGN--GGIFEVCWNKEGDKIAACF--ANHTVCVLDF  562 (564)
Q Consensus       519 w~~~~~~~~~~~~~~--~~i~~~~w~~~g~~la~~~--~~~~v~v~~~  562 (564)
                      |+..++..+..+.++  ..+..++|++..+.++++.  .|+.+.+|.-
T Consensus       406 ~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~  453 (456)
T KOG0266|consen  406 WDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKY  453 (456)
T ss_pred             EeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence            999998888888777  5688999999999999987  6778888853

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.5e-36  Score=285.12  Aligned_cols=296  Identities=25%  Similarity=0.444  Sum_probs=252.0

Q ss_pred             ccceeecCCceeEccCCccceEEEEECC-CCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCC
Q 008467          199 SESFEIPNSDVTILEGHTSEVCACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKD  277 (564)
Q Consensus       199 ~~~~~~~~~~~~~l~~h~~~V~~~~~sp-~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (564)
                      +....+|...+.++.||+..|+++.|.| .+.+|++||.|+.|+||++.+..                .+.....+|..+
T Consensus       197 ~~rc~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~----------------~~lrtf~gH~k~  260 (503)
T KOG0282|consen  197 EERCYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR----------------RCLRTFKGHRKP  260 (503)
T ss_pred             cceeeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc----------------ceehhhhcchhh
Confidence            4567789999999999999999999999 79999999999999999987521                112233456889


Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCcceeEEEe
Q 008467          278 VTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFE  355 (564)
Q Consensus       278 V~~l~~s~~g~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~  355 (564)
                      |..++|+.+|..|+|+++|+.+++||++. .....+. ....+++++|+|++ +.|++|+.|+.|+.||++++++++.+.
T Consensus       261 Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd  339 (503)
T KOG0282|consen  261 VRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD  339 (503)
T ss_pred             hhhhhccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH
Confidence            99999999999999999999999999874 4444442 34567999999999 789999999999999999999999999


Q ss_pred             ecccCeEEEEcC-CCceEEEEeCCCeEEEEEcCCCceeeEecC-CCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCee
Q 008467          356 FHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENRPIKTFAG-HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY  433 (564)
Q Consensus       356 ~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~  433 (564)
                      .|.+++.++.|. .+..|++++.|+.+++|+.+.+.+++.... +.....|+..+|++++++.-+.|+.|-|+.+...-.
T Consensus       340 ~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r  419 (503)
T KOG0282|consen  340 RHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR  419 (503)
T ss_pred             hhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccc
Confidence            999999999986 457899999999999999998887765432 344677899999999999999999999998653221


Q ss_pred             ---eeeccccccc--EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCC-CEE
Q 008467          434 ---VHDLREHSKE--IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG-EYL  507 (564)
Q Consensus       434 ---~~~~~~~~~~--i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg-~~l  507 (564)
                         -..|.+|...  -..+.|||+|.         +|++|+.||.+.+||.++.+.+..+.+|..++..+.|+|.. ..+
T Consensus       420 ~nkkK~feGh~vaGys~~v~fSpDG~---------~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skv  490 (503)
T KOG0282|consen  420 LNKKKRFEGHSVAGYSCQVDFSPDGR---------TLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKV  490 (503)
T ss_pred             cCHhhhhcceeccCceeeEEEcCCCC---------eEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCccee
Confidence               2345666533  45678999987         89999999999999999999999999999999999999975 689


Q ss_pred             EEEeCCCcEEEEe
Q 008467          508 ASGSLDKSMHIWS  520 (564)
Q Consensus       508 asgs~dg~i~iw~  520 (564)
                      ||||.||.|++|+
T Consensus       491 at~~w~G~Ikiwd  503 (503)
T KOG0282|consen  491 ATCGWDGLIKIWD  503 (503)
T ss_pred             EecccCceeEecC
Confidence            9999999999996

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=2e-35  Score=261.78  Aligned_cols=286  Identities=27%  Similarity=0.455  Sum_probs=242.1

Q ss_pred             ceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC
Q 008467          208 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG  287 (564)
Q Consensus       208 ~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g  287 (564)
                      .+..+.||.+.|+++.|+|+|..|||||.|..|.+|++.....         +...+       ..|+..|..+.|.+|+
T Consensus        39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce---------N~~~l-------kgHsgAVM~l~~~~d~  102 (338)
T KOG0265|consen   39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE---------NFWVL-------KGHSGAVMELHGMRDG  102 (338)
T ss_pred             hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc---------ceeee-------ccccceeEeeeeccCC
Confidence            3457889999999999999999999999999999999764322         11222       2567899999999999


Q ss_pred             CEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCE-EEEeeCCCcEEEEECCCcceeEEEeecccCeEEEE
Q 008467          288 TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDY-LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD  365 (564)
Q Consensus       288 ~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~  365 (564)
                      +.+++++.|.+++.||.. |+....++.|.+-|.++.-+.-|.. +.|++.|+++++||+++...++.++. ...+.++.
T Consensus       103 s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~  181 (338)
T KOG0265|consen  103 SHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVG  181 (338)
T ss_pred             CEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEE
Confidence            999999999999999975 6777788999999999885555554 56899999999999998887776532 23466788


Q ss_pred             cCCC-ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCC----Ceeeeecccc
Q 008467          366 WRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ----DKYVHDLREH  440 (564)
Q Consensus       366 ~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~----~~~~~~~~~~  440 (564)
                      |.+. ....+++-|+.|.+|++..+....++.||...|+.+..+|+|.++.+-+.|.++++||++.    .+++..+.+|
T Consensus       182 f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~  261 (338)
T KOG0265|consen  182 FKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGH  261 (338)
T ss_pred             ecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecc
Confidence            8654 5678889999999999999999999999999999999999999999999999999999874    3446666554


Q ss_pred             cc----cEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 008467          441 SK----EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSM  516 (564)
Q Consensus       441 ~~----~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i  516 (564)
                      ..    ......|+|++.         .+..|+.|..+.+||......++.+.||.+.|+++.|+|...+|.+++.|++|
T Consensus       262 ~hnfeknlL~cswsp~~~---------~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i  332 (338)
T KOG0265|consen  262 IHNFEKNLLKCSWSPNGT---------KITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTI  332 (338)
T ss_pred             hhhhhhhcceeeccCCCC---------ccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCcee
Confidence            32    345678999876         57789999999999999889999999999999999999999999999999999


Q ss_pred             EEE
Q 008467          517 HIW  519 (564)
Q Consensus       517 ~iw  519 (564)
                      ++=
T Consensus       333 ~lg  335 (338)
T KOG0265|consen  333 YLG  335 (338)
T ss_pred             Eee
Confidence            863

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=8.2e-34  Score=274.44  Aligned_cols=280  Identities=36%  Similarity=0.627  Sum_probs=251.0

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCccee
Q 008467          273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK  351 (564)
Q Consensus       273 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~  351 (564)
                      .|...|++++|+|++++|++++.||.+++|+... .....+..|..++..+.|+|++++|++++.|+.+++||+.+++..
T Consensus         7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~   86 (289)
T cd00200           7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECV   86 (289)
T ss_pred             ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccce
Confidence            3567899999999999999999999999999764 455677889999999999999999999999999999999988888


Q ss_pred             EEEeecccCeEEEEcCCCceE-EEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 008467          352 QQFEFHSGPTLDVDWRNNVSF-ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ  430 (564)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~  430 (564)
                      ..+..+...+..+.|.++..+ ++++.++.+++|++...+++..+..|...+.+++|+|++.++++++.|+.|++||+++
T Consensus        87 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~  166 (289)
T cd00200          87 RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT  166 (289)
T ss_pred             EEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccc
Confidence            888888888999999876544 4555599999999998888888999999999999999999999998899999999998


Q ss_pred             CeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEE
Q 008467          431 DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASG  510 (564)
Q Consensus       431 ~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasg  510 (564)
                      ++.+..+..|...+.++.|+|++.         .+++++.|+.|++||++.++.+..+..|..+|.+++|+|++.+++++
T Consensus       167 ~~~~~~~~~~~~~i~~~~~~~~~~---------~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  237 (289)
T cd00200         167 GKCVATLTGHTGEVNSVAFSPDGE---------KLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASG  237 (289)
T ss_pred             cccceeEecCccccceEEECCCcC---------EEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEE
Confidence            888888888988999999999874         57778889999999999999888888898899999999999999999


Q ss_pred             eCCCcEEEEeCCCCeEEEEEecC-CCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467          511 SLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLD  561 (564)
Q Consensus       511 s~dg~i~iw~~~~~~~~~~~~~~-~~i~~~~w~~~g~~la~~~~~~~v~v~~  561 (564)
                      +.||.|++|++.+++.+..+..+ ..+..++|+++++.|++++.|+.+.||+
T Consensus       238 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             cCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            99999999999998888877654 4699999999999999999999999986

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=8e-37  Score=275.08  Aligned_cols=268  Identities=28%  Similarity=0.520  Sum_probs=233.9

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeE
Q 008467          274 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ  352 (564)
Q Consensus       274 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~  352 (564)
                      .++.|.|+.+  |...+++|..|++|+|||.+. .....+.+|+++|.|+.|..  ..+++||+|.+|++||+++++.+.
T Consensus       196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~  271 (499)
T KOG0281|consen  196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLN  271 (499)
T ss_pred             cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhh
Confidence            4578999987  456899999999999999875 45667899999999998864  589999999999999999999999


Q ss_pred             EEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCc---eeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 008467          353 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR---PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK  429 (564)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~---~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~  429 (564)
                      ++..|...++.+.+.++ ..++|+.|.++.+|++....   ..+.+.||...|+.+.|+  .++++|+|.|.+|++|++.
T Consensus       272 tlihHceaVLhlrf~ng-~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~s  348 (499)
T KOG0281|consen  272 TLIHHCEAVLHLRFSNG-YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTS  348 (499)
T ss_pred             HHhhhcceeEEEEEeCC-EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEecc
Confidence            99999999999988655 57899999999999998764   345678999999999996  5799999999999999999


Q ss_pred             CCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEE
Q 008467          430 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS  509 (564)
Q Consensus       430 ~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~las  509 (564)
                      +..+++++.+|...|.|+.+.-           .++++||.|.+|++||+..|.++..+.||..-|.++.|  |.+.|++
T Consensus       349 t~efvRtl~gHkRGIAClQYr~-----------rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVS  415 (499)
T KOG0281|consen  349 TCEFVRTLNGHKRGIACLQYRD-----------RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVS  415 (499)
T ss_pred             ceeeehhhhcccccceehhccC-----------eEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeee
Confidence            9999999999999999988743           37899999999999999999999999999999999999  5679999


Q ss_pred             EeCCCcEEEEeCCCCeEE---------EEE-ecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          510 GSLDKSMHIWSLKEGKIV---------KTY-TGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       510 gs~dg~i~iw~~~~~~~~---------~~~-~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      |+.||+|+|||+..+.-.         .+. ...+.|+.+.|+  .-.+++++.|.+|-||||-
T Consensus       416 GaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl  477 (499)
T KOG0281|consen  416 GAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFL  477 (499)
T ss_pred             ccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcC
Confidence            999999999999876422         111 234679999985  5688899999999999984

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1e-34  Score=263.64  Aligned_cols=286  Identities=22%  Similarity=0.384  Sum_probs=233.4

Q ss_pred             eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467          209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  288 (564)
Q Consensus       209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  288 (564)
                      ...+.+|+..|+++.||-+|.+||||..+|.++||+..++...          ..+.       ..-..+.-+.|+|.+.
T Consensus        99 ~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~----------~~~~-------~e~~dieWl~WHp~a~  161 (399)
T KOG0296|consen   99 AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQ----------WKLD-------QEVEDIEWLKWHPRAH  161 (399)
T ss_pred             eeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceE----------EEee-------cccCceEEEEeccccc
Confidence            3567899999999999999999999999999999998876421          1111       1235688899999999


Q ss_pred             EEEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecc-cCeEEEEc
Q 008467          289 LLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS-GPTLDVDW  366 (564)
Q Consensus       289 ~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~  366 (564)
                      .|+.|+.||.+.+|.... ...+.+.+|+.++++-.|.|+|++++++..||+|++||+.++.....+.... .....+..
T Consensus       162 illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~  241 (399)
T KOG0296|consen  162 ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISL  241 (399)
T ss_pred             EEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccc
Confidence            999999999999999876 6777899999999999999999999999999999999999997666554211 11122222


Q ss_pred             C-CCceEEEEeCCCeEEEEEcCCCceeeEec--------CCCcceEEEE---ECCCCCEEEEEeCCCcEEEEeCCCCeee
Q 008467          367 R-NNVSFATSSTDNMIYVCKIGENRPIKTFA--------GHQGEVNCVK---WDPTGSLLASCSDDVTAKIWNMKQDKYV  434 (564)
Q Consensus       367 ~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~--------~h~~~i~~v~---~~~~~~~las~s~dg~i~iwd~~~~~~~  434 (564)
                      . ....++.|+.++.+++.....++.+..+.        ++...+.|+.   |+..-++.|+|+-||+|.|||+...+..
T Consensus       242 ~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R  321 (399)
T KOG0296|consen  242 NLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLR  321 (399)
T ss_pred             ccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhh
Confidence            2 22345667778888888777777666655        3455555554   4555678899999999999999887665


Q ss_pred             eecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCC
Q 008467          435 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK  514 (564)
Q Consensus       435 ~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg  514 (564)
                      +. -.|...|+.+.|-++.          +|++++.||.|+.||.++|++++++.||..+|.+++++|++++++|+|.|+
T Consensus       322 ~~-c~he~~V~~l~w~~t~----------~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~  390 (399)
T KOG0296|consen  322 HI-CEHEDGVTKLKWLNTD----------YLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDN  390 (399)
T ss_pred             ee-ccCCCceEEEEEcCcc----------hheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCC
Confidence            44 4688889999998832          688999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEeCC
Q 008467          515 SMHIWSLK  522 (564)
Q Consensus       515 ~i~iw~~~  522 (564)
                      +.+||++.
T Consensus       391 ~a~VF~v~  398 (399)
T KOG0296|consen  391 TALVFEVP  398 (399)
T ss_pred             eEEEEecC
Confidence            99999875

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.4e-35  Score=270.28  Aligned_cols=302  Identities=26%  Similarity=0.385  Sum_probs=239.6

Q ss_pred             cceeecCCceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeE
Q 008467          200 ESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVT  279 (564)
Q Consensus       200 ~~~~~~~~~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~  279 (564)
                      ...++|.....++..|+++|.-+.||++|++|||++.|.++.||++.....           ..++   ....+|..+|.
T Consensus       208 ~~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~-----------~kl~---~tlvgh~~~V~  273 (519)
T KOG0293|consen  208 GRLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH-----------FKLK---KTLVGHSQPVS  273 (519)
T ss_pred             CcccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc-----------eeee---eeeecccCceE
Confidence            344678888889999999999999999999999999999999999754221           1111   12235678999


Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEECCCc-eeEee-cCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeec
Q 008467          280 TLDWNGEGTLLATGSYDGQARIWSTNGD-LKCTL-SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH  357 (564)
Q Consensus       280 ~l~~s~~g~~l~sg~~dg~i~vw~~~~~-~~~~~-~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~  357 (564)
                      .+.||||.++|++++.+..+++||+... ....+ .+|...+.+++|.|||..+++|+.|+++..||+.... ...++..
T Consensus       274 yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gv  352 (519)
T KOG0293|consen  274 YIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGV  352 (519)
T ss_pred             EEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhccccc
Confidence            9999999999999999999999998643 33322 3456899999999999999999999999999986543 2333322


Q ss_pred             c-cCeEEEEcCC-CceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeee
Q 008467          358 S-GPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH  435 (564)
Q Consensus       358 ~-~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~  435 (564)
                      . ..+.++.... +..+++...|..|++++......+.. ..-..+|++++.|.+++++.+.-.+..+++||+...+.+.
T Consensus       353 r~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~l-ise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~  431 (519)
T KOG0293|consen  353 RDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGL-ISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVR  431 (519)
T ss_pred             ccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcc-ccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHH
Confidence            2 3466666544 34555667888888888765433322 2335689999999999999999999999999999888888


Q ss_pred             ecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCC-CEEEEEeCCC
Q 008467          436 DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG-EYLASGSLDK  514 (564)
Q Consensus       436 ~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg-~~lasgs~dg  514 (564)
                      .+.+|...-+-|.-.-.|.      +..+++|||.|+.|+||+..+|+++.++.||...|++++|+|.. .++|+||+||
T Consensus       432 kY~Ghkq~~fiIrSCFgg~------~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDg  505 (519)
T KOG0293|consen  432 KYFGHKQGHFIIRSCFGGG------NDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDG  505 (519)
T ss_pred             HhhcccccceEEEeccCCC------CcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCC
Confidence            8999987766665333332      23489999999999999999999999999999999999999965 6789999999


Q ss_pred             cEEEEeCCC
Q 008467          515 SMHIWSLKE  523 (564)
Q Consensus       515 ~i~iw~~~~  523 (564)
                      +|+||....
T Consensus       506 tIRIWg~~~  514 (519)
T KOG0293|consen  506 TIRIWGPSD  514 (519)
T ss_pred             eEEEecCCc
Confidence            999998753

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.2e-35  Score=280.29  Aligned_cols=285  Identities=27%  Similarity=0.376  Sum_probs=250.6

Q ss_pred             EccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEE
Q 008467          211 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL  290 (564)
Q Consensus       211 ~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l  290 (564)
                      .+..|+..|-++.|||...+++++=..|.+.||+.++......             +    ....-+|.+..|-+.-+++
T Consensus         8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVks-------------f----eV~~~PvRa~kfiaRknWi   70 (794)
T KOG0276|consen    8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKS-------------F----EVSEVPVRAAKFIARKNWI   70 (794)
T ss_pred             HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeee-------------e----eecccchhhheeeeccceE
Confidence            3455889999999999999999999999999999887543211             1    1123567888888888999


Q ss_pred             EEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCC
Q 008467          291 ATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN  369 (564)
Q Consensus       291 ~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  369 (564)
                      ++|+.|..||||+.+ +..+..|..|..-|.+++.+|.-.+++|+|.|.+|++||...+                     
T Consensus        71 v~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~---------------------  129 (794)
T KOG0276|consen   71 VTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE---------------------  129 (794)
T ss_pred             EEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCc---------------------
Confidence            999999999999976 4667889999999999999999999999999999999997542                     


Q ss_pred             ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEE
Q 008467          370 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR  448 (564)
Q Consensus       370 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~-~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~  448 (564)
                                         -...++|.||+..|.+++|+| |.+.+||||-|++|++|.+.+..+..++.+|...|.++.
T Consensus       130 -------------------wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vd  190 (794)
T KOG0276|consen  130 -------------------WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVD  190 (794)
T ss_pred             -------------------eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEE
Confidence                               123468999999999999999 567899999999999999999999999999999999999


Q ss_pred             EccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 008467          449 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK  528 (564)
Q Consensus       449 ~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~  528 (564)
                      |-+.|.       +.+|+||+.|.+|+|||.++..|+.++.||...|..+.|+|.=..+++||.||+|+||+..+.++.+
T Consensus       191 yy~~gd-------kpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~  263 (794)
T KOG0276|consen  191 YYTGGD-------KPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEK  263 (794)
T ss_pred             eccCCC-------cceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhh
Confidence            998764       3489999999999999999999999999999999999999999999999999999999999988887


Q ss_pred             EEe-cCCCEEEEEEccCCCEEEEEEcCCcEEE
Q 008467          529 TYT-GNGGIFEVCWNKEGDKIAACFANHTVCV  559 (564)
Q Consensus       529 ~~~-~~~~i~~~~w~~~g~~la~~~~~~~v~v  559 (564)
                      ++. +-+.+++++-.+.+.++|+|+.+|.+.|
T Consensus       264 tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  264 TLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             hhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence            765 3467999999999999999999987754

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.2e-34  Score=246.47  Aligned_cols=241  Identities=24%  Similarity=0.464  Sum_probs=219.6

Q ss_pred             eEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcC-CCceEEEEeCCCeEEEEEcC
Q 008467          309 KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIG  387 (564)
Q Consensus       309 ~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~  387 (564)
                      ...+.+|.++|..++|+-+|+|.++++.|++|++|++..+.+++++..|...++++... ++..|++|+.|..+.+||+.
T Consensus        10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~   89 (307)
T KOG0316|consen   10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN   89 (307)
T ss_pred             ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc
Confidence            45678999999999999999999999999999999999999999999999999998864 66789999999999999999


Q ss_pred             CCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCC--eeeeecccccccEEEEEEccCCCCCCCCCCcEEE
Q 008467          388 ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD--KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLIL  465 (564)
Q Consensus       388 ~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~--~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l  465 (564)
                      +++.++.|+||.+.|+.++|+.+...+++||.|.++++||.++.  ++++.+......|.+|.....           .+
T Consensus        90 TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~h-----------eI  158 (307)
T KOG0316|consen   90 TGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEH-----------EI  158 (307)
T ss_pred             cCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEeccc-----------EE
Confidence            99999999999999999999999999999999999999998754  567777777788888877542           58


Q ss_pred             EEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCE---EEEEEc
Q 008467          466 ASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGI---FEVCWN  542 (564)
Q Consensus       466 ~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i---~~~~w~  542 (564)
                      ++||.||++|.||++.|+......+|  ||++++||+||+...+++.|++|++.|-.+|++++.|.++...   .+.+++
T Consensus       159 vaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~  236 (307)
T KOG0316|consen  159 VAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLN  236 (307)
T ss_pred             EeeccCCcEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeec
Confidence            89999999999999999987666554  8999999999999999999999999999999999999887543   478899


Q ss_pred             cCCCEEEEEEcCCcEEEEEe
Q 008467          543 KEGDKIAACFANHTVCVLDF  562 (564)
Q Consensus       543 ~~g~~la~~~~~~~v~v~~~  562 (564)
                      ....+++.|+.||.|.+||+
T Consensus       237 qsdthV~sgSEDG~Vy~wdL  256 (307)
T KOG0316|consen  237 QSDTHVFSGSEDGKVYFWDL  256 (307)
T ss_pred             ccceeEEeccCCceEEEEEe
Confidence            99999999999999999997

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=3.7e-33  Score=242.62  Aligned_cols=274  Identities=24%  Similarity=0.368  Sum_probs=244.5

Q ss_pred             cccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCce---eEeecCCCCCEEEEEeCCC-CCEEEEeeCCCcEEEEECC
Q 008467          271 TNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL---KCTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVK  346 (564)
Q Consensus       271 ~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~---~~~~~~h~~~V~~l~~~~~-~~~l~s~s~D~~v~iwd~~  346 (564)
                      ..++...|.+++|+.+|..|++|+.|+++++|+..+..   .....+|.+.|-.++|+|. ...|++++.|++|++||++
T Consensus        16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r   95 (313)
T KOG1407|consen   16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIR   95 (313)
T ss_pred             hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEec
Confidence            34556789999999999999999999999999987542   1245789999999999885 4689999999999999999


Q ss_pred             CcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEE
Q 008467          347 TEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW  426 (564)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iw  426 (564)
                      .+++........+.+...-+.++..++.++.|..|...+.++.+++..+. ..-.++-++|+.++.+++.....|+|.|-
T Consensus        96 ~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~IL  174 (313)
T KOG1407|consen   96 SGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEIL  174 (313)
T ss_pred             cCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEEEE
Confidence            99999988888777777777788899999999999999998877665443 34467789999888888888788999999


Q ss_pred             eCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCE
Q 008467          427 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY  506 (564)
Q Consensus       427 d~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~  506 (564)
                      ....-+++.++++|...+.+|.|+|+|.         ++|+|+.|..+.+||+..--|+..+..+.-||..|+||.||++
T Consensus       175 sypsLkpv~si~AH~snCicI~f~p~Gr---------yfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~  245 (313)
T KOG1407|consen  175 SYPSLKPVQSIKAHPSNCICIEFDPDGR---------YFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRM  245 (313)
T ss_pred             eccccccccccccCCcceEEEEECCCCc---------eEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcce
Confidence            9999999999999999999999999997         8999999999999999988888899989999999999999999


Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcC
Q 008467          507 LASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN  554 (564)
Q Consensus       507 lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~  554 (564)
                      ||+||.|..|-|=++++|..+...+..++.+.++|+|....||.+..|
T Consensus       246 lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  246 LASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             eeccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecC
Confidence            999999999999999999999999999999999999999999988765

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.9e-33  Score=239.62  Aligned_cols=285  Identities=20%  Similarity=0.380  Sum_probs=240.9

Q ss_pred             eecCCceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEE
Q 008467          203 EIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLD  282 (564)
Q Consensus       203 ~~~~~~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~  282 (564)
                      +.|.....+|..|+++|.++.|+-+|++.+|++.|.++|+|+...+..             ++..    ..|...|..++
T Consensus         4 e~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~l-------------iktY----sghG~EVlD~~   66 (307)
T KOG0316|consen    4 ELPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGAL-------------IKTY----SGHGHEVLDAA   66 (307)
T ss_pred             cCcchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccce-------------eeee----cCCCceeeecc
Confidence            356667788999999999999999999999999999999999765532             2332    34567799999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCe
Q 008467          283 WNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT  361 (564)
Q Consensus       283 ~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~  361 (564)
                      -+.|...|++|+.|..+.+||++ |+....+.+|.+.|..++|+.+...+++||.|.++++||.++..            
T Consensus        67 ~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s------------  134 (307)
T KOG0316|consen   67 LSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRS------------  134 (307)
T ss_pred             ccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCC------------
Confidence            99999999999999999999986 67788999999999999999999999999999999999987643            


Q ss_pred             EEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeeccccc
Q 008467          362 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHS  441 (564)
Q Consensus       362 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~  441 (564)
                                                 ..|++.+......|.++...  +..|++||.||++|.||++.+.......  .
T Consensus       135 ---------------------------~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~--g  183 (307)
T KOG0316|consen  135 ---------------------------FEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYF--G  183 (307)
T ss_pred             ---------------------------CCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhc--C
Confidence                                       35667777777788888775  6789999999999999999998766554  4


Q ss_pred             ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEE--EEEcCCCCEEEEEeCCCcEEEE
Q 008467          442 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYS--LAFSPTGEYLASGSLDKSMHIW  519 (564)
Q Consensus       442 ~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~--~~~spdg~~lasgs~dg~i~iw  519 (564)
                      .+|+++.|++++.         .++.++.|+++++.|-.+|+.+...++|...=+.  .+++.....+++||.||.|++|
T Consensus       184 ~pit~vs~s~d~n---------c~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~w  254 (307)
T KOG0316|consen  184 HPITSVSFSKDGN---------CSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFW  254 (307)
T ss_pred             CcceeEEecCCCC---------EEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEE
Confidence            5799999999986         5667889999999999999999999999765444  4677778899999999999999


Q ss_pred             eCCCCeEEEEEecCCC--EEEEEEccCCCEEEEEEcCCc
Q 008467          520 SLKEGKIVKTYTGNGG--IFEVCWNKEGDKIAACFANHT  556 (564)
Q Consensus       520 ~~~~~~~~~~~~~~~~--i~~~~w~~~g~~la~~~~~~~  556 (564)
                      |+.+++++..+...+.  +.+++++|.-..+.++...+.
T Consensus       255 dLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~  293 (307)
T KOG0316|consen  255 DLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHGD  293 (307)
T ss_pred             EeccceeeeeeccCCceeEEeeecccCccceeEecCCce
Confidence            9999998888876554  579999998877776654443

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=5.9e-34  Score=257.70  Aligned_cols=241  Identities=28%  Similarity=0.519  Sum_probs=220.5

Q ss_pred             cccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcc
Q 008467          271 TNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE  349 (564)
Q Consensus       271 ~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~  349 (564)
                      ...|.+.|.|+++.|-.++|++|+.|++++|||.. |.++.++.+|...|..+++++...|+++++.|+.|+.||+...+
T Consensus       147 i~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nk  226 (460)
T KOG0285|consen  147 ISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNK  226 (460)
T ss_pred             hhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhh
Confidence            34677899999999999999999999999999975 77888999999999999999999999999999999999997654


Q ss_pred             eeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 008467          350 WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK  429 (564)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~  429 (564)
                                                               .++.+-||-+.|.|++.+|.-..|+||+.|.++||||++
T Consensus       227 -----------------------------------------vIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiR  265 (460)
T KOG0285|consen  227 -----------------------------------------VIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIR  265 (460)
T ss_pred             -----------------------------------------hHHHhccccceeEEEeccccceeEEecCCcceEEEeeec
Confidence                                                     455677899999999999999999999999999999999


Q ss_pred             CCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEE
Q 008467          430 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS  509 (564)
Q Consensus       430 ~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~las  509 (564)
                      +...++.+.+|..+|.++.+.|...         .+++||+|++|++||++.|+...++..|...|.+++.+|....+|+
T Consensus       266 tr~~V~~l~GH~~~V~~V~~~~~dp---------qvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fAS  336 (460)
T KOG0285|consen  266 TRASVHVLSGHTNPVASVMCQPTDP---------QVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFAS  336 (460)
T ss_pred             ccceEEEecCCCCcceeEEeecCCC---------ceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhc
Confidence            9999999999999999999988654         4889999999999999999999999999999999999999999999


Q ss_pred             EeCCCcEEEEeCCCCeEEEEEecCCC-EEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          510 GSLDKSMHIWSLKEGKIVKTYTGNGG-IFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       510 gs~dg~i~iw~~~~~~~~~~~~~~~~-i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      +|.|. |+-|++..|..++.+.++.. |+.++-+.|| .+++|+.+|.+..||++
T Consensus       337 as~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwk  389 (460)
T KOG0285|consen  337 ASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWK  389 (460)
T ss_pred             cCCcc-ceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecC
Confidence            99986 99999999999988877654 6789988887 66777799999999987

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.1e-34  Score=272.64  Aligned_cols=281  Identities=22%  Similarity=0.421  Sum_probs=238.2

Q ss_pred             cccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECC--CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC
Q 008467          271 TNEKSKDVTTLDWNG-EGTLLATGSYDGQARIWSTN--GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT  347 (564)
Q Consensus       271 ~~~~~~~V~~l~~s~-~g~~l~sg~~dg~i~vw~~~--~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~  347 (564)
                      ..+|.+.|+++.|.| .+.+|++|+.|+.|+||++-  +.++.++.+|..+|..++|+++|..|+|+|.|+.+++||+++
T Consensus       210 ~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtET  289 (503)
T KOG0282|consen  210 LSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTET  289 (503)
T ss_pred             ccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeecccc
Confidence            356788999999999 89999999999999999963  678889999999999999999999999999999999999999


Q ss_pred             cceeEEEeecccCeEEEEcC--CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEE
Q 008467          348 EEWKQQFEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI  425 (564)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~i  425 (564)
                      |.+...|.... .+.++.+.  +...|++++.|+.|..||++.++.++.+..|-+.|+.+.|-++|+.+++.++|++++|
T Consensus       290 G~~~~~f~~~~-~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~ri  368 (503)
T KOG0282|consen  290 GQVLSRFHLDK-VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRI  368 (503)
T ss_pred             ceEEEEEecCC-CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEE
Confidence            99998876543 33455554  4468999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCeeeeecc-cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC---eEEEEEeCCCCC--EEEEE
Q 008467          426 WNMKQDKYVHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG---KLLYSLNGHREP--VYSLA  499 (564)
Q Consensus       426 wd~~~~~~~~~~~-~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~h~~~--i~~~~  499 (564)
                      |+.+..-.+..+. .+...+.++..+|.+.         +++.-+.|+.|.++.+...   .....+.+|..+  -..+.
T Consensus       369 We~~~~v~ik~i~~~~~hsmP~~~~~P~~~---------~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~  439 (503)
T KOG0282|consen  369 WENRIPVPIKNIADPEMHTMPCLTLHPNGK---------WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVD  439 (503)
T ss_pred             EEcCCCccchhhcchhhccCcceecCCCCC---------eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEE
Confidence            9988765543322 1223345667778765         6888899999999986532   122356778644  45678


Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC-CCEEEEEEccCC-CEEEEEEcCCcEEEEE
Q 008467          500 FSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEG-DKIAACFANHTVCVLD  561 (564)
Q Consensus       500 ~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~-~~i~~~~w~~~g-~~la~~~~~~~v~v~~  561 (564)
                      |||||.+|++|+.||.+.+||.++-+++..+..+ +.+..+.|+|.- +.+|+|+.+|.|.|||
T Consensus       440 fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  440 FSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             EcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            9999999999999999999999999999988876 668899999965 6999999999999996

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=7.1e-33  Score=252.85  Aligned_cols=279  Identities=27%  Similarity=0.475  Sum_probs=232.9

Q ss_pred             CCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC---CEE
Q 008467          214 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG---TLL  290 (564)
Q Consensus       214 ~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g---~~l  290 (564)
                      .|.+.|.++.-.  +++++||+.||++|||+.....              ....    .+|+.+|.+++|-...   ..|
T Consensus       103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~--------------~~~~----~Ght~~ik~v~~v~~n~~~~~f  162 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKS--------------IKTI----VGHTGPIKSVAWVIKNSSSCLF  162 (423)
T ss_pred             cchhhhhhhccc--CceEEEeecCCeeEEEecCCce--------------EEEE----ecCCcceeeeEEEecCCccceE
Confidence            488888888776  7899999999999999975321              1122    3456788888885433   359


Q ss_pred             EEEeCCCeEEEEECCCc-----eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC------------------
Q 008467          291 ATGSYDGQARIWSTNGD-----LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT------------------  347 (564)
Q Consensus       291 ~sg~~dg~i~vw~~~~~-----~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~------------------  347 (564)
                      ++++.|.++++|..+..     ....-.+|..+|-++...++|..+++||.|.+++||+..+                  
T Consensus       163 vsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~  242 (423)
T KOG0313|consen  163 VSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQK  242 (423)
T ss_pred             EEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhh
Confidence            99999999999976531     1223349999999999999999999999999999999321                  


Q ss_pred             -------cceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCC
Q 008467          348 -------EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD  420 (564)
Q Consensus       348 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~d  420 (564)
                             +..+-.+..|..++.++-|.+...+.+++.|.+|++||+..++.+..+.+ ...++|+.++|..++||+||.|
T Consensus       243 ~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssd  321 (423)
T KOG0313|consen  243 REKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSD  321 (423)
T ss_pred             hhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCC
Confidence                   11233567899999999999999999999999999999999887776654 4578999999999999999999


Q ss_pred             CcEEEEeCCCCe---eeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-EEEEEeCCCCCEE
Q 008467          421 VTAKIWNMKQDK---YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-LLYSLNGHREPVY  496 (564)
Q Consensus       421 g~i~iwd~~~~~---~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~h~~~i~  496 (564)
                      ..||+||.+++.   ..++|.+|...|.++.|+|...        +.|++|+.|+++++||+++.+ .++.+.+|...|.
T Consensus       322 r~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~--------~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl  393 (423)
T KOG0313|consen  322 RHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNE--------FQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVL  393 (423)
T ss_pred             CceeecCCCCCCCceeEEeeecchhhhhheecCCCCc--------eEEEEEecCCeEEEEEeccCCCcceeeccCCceEE
Confidence            999999998653   4578899999999999998753        589999999999999999887 8999999999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCC
Q 008467          497 SLAFSPTGEYLASGSLDKSMHIWSLK  522 (564)
Q Consensus       497 ~~~~spdg~~lasgs~dg~i~iw~~~  522 (564)
                      ++.|+ ++.+|++||.|++|+|+...
T Consensus       394 ~vdW~-~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  394 SVDWN-EGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             EEecc-CCceEEeccCcceEEEeccc
Confidence            99997 67899999999999998754

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=3e-34  Score=258.50  Aligned_cols=273  Identities=24%  Similarity=0.465  Sum_probs=231.7

Q ss_pred             CccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEe
Q 008467          215 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS  294 (564)
Q Consensus       215 h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~  294 (564)
                      ....|+|+.+  |...+++|..|.+|+|||..+-.+             +    ....+|++.|.|+.|.  .+.+++|+
T Consensus       196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c-------------~----~~L~GHtGSVLCLqyd--~rviisGS  254 (499)
T KOG0281|consen  196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLEC-------------L----KILTGHTGSVLCLQYD--ERVIVSGS  254 (499)
T ss_pred             cCCceEEEEe--cchhhhcccccCceEEeccccHHH-------------H----HhhhcCCCcEEeeecc--ceEEEecC
Confidence            3467999987  567889999999999999764321             1    1234567889999985  46999999


Q ss_pred             CCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcc---eeEEEeecccCeEEEEcCCCc
Q 008467          295 YDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE---WKQQFEFHSGPTLDVDWRNNV  370 (564)
Q Consensus       295 ~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~  370 (564)
                      .|.+|+|||.+ |....++.+|...|..+.|+.  .+++++|.|.++.+||+....   +...+..|...+..+++.+. 
T Consensus       255 SDsTvrvWDv~tge~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k-  331 (499)
T KOG0281|consen  255 SDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK-  331 (499)
T ss_pred             CCceEEEEeccCCchhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc-
Confidence            99999999986 677788899999999999984  599999999999999986543   33445677778888888665 


Q ss_pred             eEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEc
Q 008467          371 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWS  450 (564)
Q Consensus       371 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~  450 (564)
                      .++++++|.+|++|++.+...++++.||...|.|+.+.  ++++++||.|.+||+||+..+.+++.+.+|..-|.++.|.
T Consensus       332 yIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd  409 (499)
T KOG0281|consen  332 YIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD  409 (499)
T ss_pred             eEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec
Confidence            78899999999999999999999999999999999884  8999999999999999999999999999999999999996


Q ss_pred             cCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe---------EEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 008467          451 PTGSGTNNPNQQLILASASFDSTVKLWDVELGK---------LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL  521 (564)
Q Consensus       451 p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~---------~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~  521 (564)
                      ..           -+++|+.||+|+|||+..+.         |+.++..|.+.|..+.|  |...|++++.|.+|.|||.
T Consensus       410 ~k-----------rIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdF  476 (499)
T KOG0281|consen  410 NK-----------RIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDF  476 (499)
T ss_pred             Cc-----------eeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEc
Confidence            43           58999999999999987653         34556678899999999  5678999999999999999


Q ss_pred             CCCeE
Q 008467          522 KEGKI  526 (564)
Q Consensus       522 ~~~~~  526 (564)
                      .++-.
T Consensus       477 l~~~~  481 (499)
T KOG0281|consen  477 LNGPP  481 (499)
T ss_pred             CCCCc
Confidence            87643

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=4.6e-32  Score=237.14  Aligned_cols=235  Identities=32%  Similarity=0.638  Sum_probs=198.5

Q ss_pred             CCCCeEEEEECCC-CCEEEEEeCCCeEEEEECCC-c---eeEee-cCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC
Q 008467          274 KSKDVTTLDWNGE-GTLLATGSYDGQARIWSTNG-D---LKCTL-SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT  347 (564)
Q Consensus       274 ~~~~V~~l~~s~~-g~~l~sg~~dg~i~vw~~~~-~---~~~~~-~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~  347 (564)
                      +...|..++|+|- |..||||+.|..||+|+..+ .   ++..+ .+|+..|.+++|+|.|++|+++|.|.++.||.-..
T Consensus        13 h~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~   92 (312)
T KOG0645|consen   13 HKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKED   92 (312)
T ss_pred             CCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCC
Confidence            4457999999998 99999999999999999873 2   22222 47999999999999999999999999999996443


Q ss_pred             cceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEe
Q 008467          348 EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN  427 (564)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd  427 (564)
                      +++                                       ..+.++.||.++|.|++|+++|.+||+||.|..|-||.
T Consensus        93 ~ef---------------------------------------ecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe  133 (312)
T KOG0645|consen   93 GEF---------------------------------------ECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWE  133 (312)
T ss_pred             Cce---------------------------------------eEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEE
Confidence            321                                       23567899999999999999999999999999999999


Q ss_pred             CCCC---eeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC---CCeEEEEEeCCCCCEEEEEEc
Q 008467          428 MKQD---KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE---LGKLLYSLNGHREPVYSLAFS  501 (564)
Q Consensus       428 ~~~~---~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~---~~~~~~~~~~h~~~i~~~~~s  501 (564)
                      ...+   .+...++.|.+.|..+.|+|...         +|+|+|.|++|++|.-.   .-.++.++.+|...|.+++|+
T Consensus       134 ~deddEfec~aVL~~HtqDVK~V~WHPt~d---------lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~  204 (312)
T KOG0645|consen  134 IDEDDEFECIAVLQEHTQDVKHVIWHPTED---------LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFD  204 (312)
T ss_pred             ecCCCcEEEEeeeccccccccEEEEcCCcc---------eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEec
Confidence            8743   45677899999999999999754         89999999999999865   346889999999999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467          502 PTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLD  561 (564)
Q Consensus       502 pdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~  561 (564)
                      |.|..|++++.|++|+||...+.   -+......++.++|.  ...||++..|+.++||-
T Consensus       205 ~~G~rl~s~sdD~tv~Iw~~~~~---~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~  259 (312)
T KOG0645|consen  205 NIGSRLVSCSDDGTVSIWRLYTD---LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFK  259 (312)
T ss_pred             CCCceEEEecCCcceEeeeeccC---cchhcccceEeeeec--ccceEeccCCCEEEEEE
Confidence            99999999999999999986521   111224569999999  55888888999998873

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=100.00  E-value=1.4e-32  Score=259.75  Aligned_cols=304  Identities=24%  Similarity=0.327  Sum_probs=236.9

Q ss_pred             ceeecCCceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEE
Q 008467          201 SFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTT  280 (564)
Q Consensus       201 ~~~~~~~~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~  280 (564)
                      ...||..+-..|.+|+..|.++++.|.|..|+|||.|.+|++||+......            .+.++.........|.+
T Consensus       152 ~~~IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas------------~~~fr~l~P~E~h~i~s  219 (641)
T KOG0772|consen  152 IKLIPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDAS------------MRSFRQLQPCETHQINS  219 (641)
T ss_pred             hhcCCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEeccccccc------------chhhhccCcccccccce
Confidence            356888888899999999999999999999999999999999998753211            11122222234567999


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEECCCceeEe-------------ecCCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECC
Q 008467          281 LDWNGEGTLLATGSYDGQARIWSTNGDLKCT-------------LSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVK  346 (564)
Q Consensus       281 l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~-------------~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~  346 (564)
                      +.||+.|..|++.+....++|+|.+|.....             -.+|...+++.+|+|..+ .|+|++.||++||||+.
T Consensus       220 l~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~  299 (641)
T KOG0772|consen  220 LQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVN  299 (641)
T ss_pred             eeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecC
Confidence            9999999999999999999999988765432             257999999999999874 69999999999999987


Q ss_pred             CcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEE
Q 008467          347 TEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW  426 (564)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iw  426 (564)
                      .-+-..+..                             ..      +...+..-.++.++|+|||++||+|..||.|.+|
T Consensus       300 ~~k~q~qVi-----------------------------k~------k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W  344 (641)
T KOG0772|consen  300 NTKSQLQVI-----------------------------KT------KPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIW  344 (641)
T ss_pred             CchhheeEE-----------------------------ee------ccCCCcccCceeeecCCCcchhhhcccCCceeee
Confidence            543211110                             00      0011233467889999999999999999999999


Q ss_pred             eCCCCee--ee-ecccccc--cEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEEeCCC--CCEEEE
Q 008467          427 NMKQDKY--VH-DLREHSK--EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHR--EPVYSL  498 (564)
Q Consensus       427 d~~~~~~--~~-~~~~~~~--~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~--~~i~~~  498 (564)
                      +......  .. .-.+|..  .|++|.|+++|.         +|+|-+.|+++++||++.. +++.+..+..  -+-+.+
T Consensus       345 ~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~---------~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc  415 (641)
T KOG0772|consen  345 DKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN---------YLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDC  415 (641)
T ss_pred             ecCCcccccceEeeeccCCCCceeEEEeccccc---------hhhhccCCCceeeeeccccccchhhhcCCCccCCCCcc
Confidence            9754321  11 2235665  899999999986         7999999999999999864 4555554432  345788


Q ss_pred             EEcCCCCEEEEEeC------CCcEEEEeCCCCeEEEEEec-CCCEEEEEEccCCCEEEEEEcCCcEEEE
Q 008467          499 AFSPTGEYLASGSL------DKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVL  560 (564)
Q Consensus       499 ~~spdg~~lasgs~------dg~i~iw~~~~~~~~~~~~~-~~~i~~~~w~~~g~~la~~~~~~~v~v~  560 (564)
                      +|||+.++|++|+.      .|.+.+||..+...+..+.- ...|..+.|+|.=+.|.+|++||.+.||
T Consensus       416 ~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy  484 (641)
T KOG0772|consen  416 CFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY  484 (641)
T ss_pred             ccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence            99999999999864      47899999998887776643 4568889999999999999999999886

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=8.2e-32  Score=232.62  Aligned_cols=265  Identities=20%  Similarity=0.364  Sum_probs=226.4

Q ss_pred             CEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcc--eeEEEeecccCeEEE
Q 008467          288 TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE--WKQQFEFHSGPTLDV  364 (564)
Q Consensus       288 ~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~--~~~~~~~~~~~~~~~  364 (564)
                      -+|+++++|.+||+|... |.+..+++...+.|..|...|+++.|++++. ..||+||++++.  .+..|+.|...+..+
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV   89 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV   89 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence            479999999999999964 6677778777789999999999998887764 689999998876  467889999999999


Q ss_pred             EcCCCce-EEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeeccc-ccc
Q 008467          365 DWRNNVS-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE-HSK  442 (564)
Q Consensus       365 ~~~~~~~-~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~-~~~  442 (564)
                      .|..+.+ ..+++.||++++|+++.....+.| .|.++|+++..+|+...|++|..+|.|++||+....+.+.+.. ...
T Consensus        90 gF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~  168 (311)
T KOG0315|consen   90 GFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT  168 (311)
T ss_pred             EEeecCeEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence            9976654 578999999999999985554444 4779999999999999999999999999999998876665543 346


Q ss_pred             cEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC------eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 008467          443 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG------KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSM  516 (564)
Q Consensus       443 ~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~------~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i  516 (564)
                      .|.++...|+|+         +|+.+...|+.++|++-+.      +++..+..|..-|....||||+++||++|.|.++
T Consensus       169 ~i~sl~v~~dgs---------ml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv  239 (311)
T KOG0315|consen  169 SIQSLTVMPDGS---------MLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTV  239 (311)
T ss_pred             ceeeEEEcCCCc---------EEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceE
Confidence            789999999986         7888889999999998654      3456688899999999999999999999999999


Q ss_pred             EEEeCCCC-eEEEEEecCC-CEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          517 HIWSLKEG-KIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       517 ~iw~~~~~-~~~~~~~~~~-~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      +||++.+- ++...++++. .+.+.+||.||.+|++|+.|+.+++|++.
T Consensus       240 ~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~  288 (311)
T KOG0315|consen  240 KIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLS  288 (311)
T ss_pred             EEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccc
Confidence            99999987 5555666553 58999999999999999999999999875

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=1.6e-32  Score=282.13  Aligned_cols=294  Identities=27%  Similarity=0.466  Sum_probs=233.0

Q ss_pred             CccceEEEEECCCCCEEEEEE--CCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEE
Q 008467          215 HTSEVCACAWSPAGSLLASGS--GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLAT  292 (564)
Q Consensus       215 h~~~V~~~~~sp~~~~lasgs--~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~s  292 (564)
                      +...|++++.||+|..+||||  .|+.++||....-.  ........+   +.........|...|+|+.|++||++||+
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl--~~~~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~lAs   86 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVL--DEKEEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSYLAS   86 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccccceeecccccc--chhhhhhcc---cchhheeeccccCceeEEEECCCCCeEee
Confidence            456799999999999999999  99999999864311  000000000   11111122346788999999999999999


Q ss_pred             EeCCCeEEEEECCC-------------------ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEE
Q 008467          293 GSYDGQARIWSTNG-------------------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ  353 (564)
Q Consensus       293 g~~dg~i~vw~~~~-------------------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~  353 (564)
                      |+.|+.|.||....                   +....+.+|.+.|..++|+|++.+|++++.|++|.|||.++.+    
T Consensus        87 GSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~----  162 (942)
T KOG0973|consen   87 GSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFE----  162 (942)
T ss_pred             ccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccce----
Confidence            99999999998651                   1456788999999999999999999999999999999987743    


Q ss_pred             EeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCee
Q 008467          354 FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY  433 (564)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~  433 (564)
                                                           .+.++.+|.+.|-.+.|+|-|++|||-++|++|+||++.....
T Consensus       163 -------------------------------------~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i  205 (942)
T KOG0973|consen  163 -------------------------------------LLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGI  205 (942)
T ss_pred             -------------------------------------eeeeeecccccccceEECCccCeeeeecCCceEEEEEccccee
Confidence                                                 2456788999999999999999999999999999999887777


Q ss_pred             eeeccccc------ccEEEEEEccCCCCCCCCCCcEEEEEEe----CCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCC
Q 008467          434 VHDLREHS------KEIYTIRWSPTGSGTNNPNQQLILASAS----FDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPT  503 (564)
Q Consensus       434 ~~~~~~~~------~~i~~i~~~p~~~~~~~~~~~~~l~s~s----~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spd  503 (564)
                      .+.+..+-      ..++.+.|+|+|.         +|++..    .-.++.|.+-.+.+.-..+-||..|+.+++|+|.
T Consensus       206 ~k~It~pf~~~~~~T~f~RlSWSPDG~---------~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~  276 (942)
T KOG0973|consen  206 EKSITKPFEESPLTTFFLRLSWSPDGH---------HLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPK  276 (942)
T ss_pred             eEeeccchhhCCCcceeeecccCCCcC---------eecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChH
Confidence            77666543      3467899999996         455432    2346888887777777889999999999999982


Q ss_pred             --------C-----C----EEEEEeCCCcEEEEeCCCCeEEEEEe--cCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          504 --------G-----E----YLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       504 --------g-----~----~lasgs~dg~i~iw~~~~~~~~~~~~--~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                              |     .    .+|+||.|++|.||.....+.+-...  .+..|.+++|+|||-.|.+|+.||+|.++.|.
T Consensus       277 lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fe  355 (942)
T KOG0973|consen  277 LFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFE  355 (942)
T ss_pred             HhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcc
Confidence                    1     1    57899999999999987666443322  24679999999999999999999999999884

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=5.6e-32  Score=276.63  Aligned_cols=240  Identities=40%  Similarity=0.696  Sum_probs=215.4

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEECCC-c--eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCccee
Q 008467          275 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-D--LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK  351 (564)
Q Consensus       275 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~-~--~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~  351 (564)
                      ...|+++.|+++|+.+++++.++.+++|+... .  ....+.+|...|..++|+|++.++++++.|++++|||+...   
T Consensus       159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~---  235 (456)
T KOG0266|consen  159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD---  235 (456)
T ss_pred             cCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCC---
Confidence            56799999999999999999999999999743 3  45566899999999999999999999999999999998332   


Q ss_pred             EEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 008467          352 QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD  431 (564)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~  431 (564)
                                                           ...++++.||...|++++|+|+|+++++|+.|++|+|||++++
T Consensus       236 -------------------------------------~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~  278 (456)
T KOG0266|consen  236 -------------------------------------GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG  278 (456)
T ss_pred             -------------------------------------CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC
Confidence                                                 2345778899999999999999999999999999999999999


Q ss_pred             eeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe--EEEEEeCCCCC--EEEEEEcCCCCEE
Q 008467          432 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK--LLYSLNGHREP--VYSLAFSPTGEYL  507 (564)
Q Consensus       432 ~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~h~~~--i~~~~~spdg~~l  507 (564)
                      +++..+.+|...|.+++|++++.         +|++++.|+.|+|||+.++.  ++..+.++..+  ++++.|+|+|.+|
T Consensus       279 ~~~~~l~~hs~~is~~~f~~d~~---------~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~l  349 (456)
T KOG0266|consen  279 ECVRKLKGHSDGISGLAFSPDGN---------LLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYL  349 (456)
T ss_pred             eEEEeeeccCCceEEEEECCCCC---------EEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEE
Confidence            99999999999999999999986         78899999999999999999  56777766655  9999999999999


Q ss_pred             EEEeCCCcEEEEeCCCCeEEEEEecCC----CEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          508 ASGSLDKSMHIWSLKEGKIVKTYTGNG----GIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       508 asgs~dg~i~iw~~~~~~~~~~~~~~~----~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      ++++.|+.+++|++..++.+..+.++.    +++....++.|..+.+|+.|+.|.+||..
T Consensus       350 l~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~  409 (456)
T KOG0266|consen  350 LSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSS  409 (456)
T ss_pred             EEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCC
Confidence            999999999999999999998887643    45666778999999999999999999974

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1e-32  Score=250.49  Aligned_cols=253  Identities=28%  Similarity=0.468  Sum_probs=231.7

Q ss_pred             EECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCC-ceEEEEeCCCe
Q 008467          302 WSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNM  380 (564)
Q Consensus       302 w~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~  380 (564)
                      |-....+...+.+|..+|+.+.|+|+-..+++++.|.+|++||..++++...+..|...+.++.+... ..+++|+.|-.
T Consensus        94 wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~  173 (406)
T KOG0295|consen   94 WIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLS  173 (406)
T ss_pred             cCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccc
Confidence            54444566778889999999999999999999999999999999999999999999999999998654 56788999999


Q ss_pred             EEEEEcCC-CceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCC
Q 008467          381 IYVCKIGE-NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNP  459 (564)
Q Consensus       381 i~~~~~~~-~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~  459 (564)
                      +.+|+..+ -..++.+.||...|.+++|-|.|.+|+||+.|.+|+.|++.++.++.+|.+|...+..++...+|.     
T Consensus       174 ~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGt-----  248 (406)
T KOG0295|consen  174 AKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGT-----  248 (406)
T ss_pred             hhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCee-----
Confidence            99999977 457788889999999999999999999999999999999999999999999999999999888875     


Q ss_pred             CCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCC---------------CCEEEEEeCCCcEEEEeCCCC
Q 008467          460 NQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPT---------------GEYLASGSLDKSMHIWSLKEG  524 (564)
Q Consensus       460 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spd---------------g~~lasgs~dg~i~iw~~~~~  524 (564)
                          ++|+|+.|.+|++|-+.++++...++.|.-+|.+++|.|.               |+++++++.|++|++||+.+|
T Consensus       249 ----i~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg  324 (406)
T KOG0295|consen  249 ----IIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG  324 (406)
T ss_pred             ----EEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC
Confidence                8999999999999999999999999999999999999763               259999999999999999999


Q ss_pred             eEEEEEecCC-CEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          525 KIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       525 ~~~~~~~~~~-~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      .++-++.++. .|.+++|+|.|++|++|..|++++|||++
T Consensus       325 ~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~  364 (406)
T KOG0295|consen  325 MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLK  364 (406)
T ss_pred             eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEec
Confidence            9999988764 69999999999999999999999999986

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=3.3e-31  Score=230.48  Aligned_cols=277  Identities=24%  Similarity=0.450  Sum_probs=232.8

Q ss_pred             eEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC-CCC
Q 008467          210 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGT  288 (564)
Q Consensus       210 ~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~  288 (564)
                      .-+.+|...|..++|+.+|..||+|+.|+++++|++......               ......++...|-.++|+| ...
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~---------------~~~~~~gh~~svdql~w~~~~~d   78 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR---------------KELVYRGHTDSVDQLCWDPKHPD   78 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhh---------------hhhcccCCCcchhhheeCCCCCc
Confidence            346789999999999999999999999999999998754211               1112234567788899988 567


Q ss_pred             EEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEc-
Q 008467          289 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW-  366 (564)
Q Consensus       289 ~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~-  366 (564)
                      +|++++.|..|++||.. ++........ +.-.-+.|+|+|.+++.++.|..|.+.|.++.+.....++... +..+.| 
T Consensus        79 ~~atas~dk~ir~wd~r~~k~~~~i~~~-~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e-~ne~~w~  156 (313)
T KOG1407|consen   79 LFATASGDKTIRIWDIRSGKCTARIETK-GENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFE-VNEISWN  156 (313)
T ss_pred             ceEEecCCceEEEEEeccCcEEEEeecc-CcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccce-eeeeeec
Confidence            99999999999999965 4444444433 3344578999999999999999999999998877765554433 344555 


Q ss_pred             CCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEE
Q 008467          367 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT  446 (564)
Q Consensus       367 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~  446 (564)
                      .++..|....+.|.|.+.....-+|+..+..|.....||.|+|+|++||+|+.|-.+.+||+..--+++.+.-+.-+|.+
T Consensus       157 ~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRT  236 (313)
T KOG1407|consen  157 NSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRT  236 (313)
T ss_pred             CCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEE
Confidence            45566777778899999999999999999999999999999999999999999999999999998899999999999999


Q ss_pred             EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC
Q 008467          447 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD  513 (564)
Q Consensus       447 i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~d  513 (564)
                      +.|+.+|.         +||+||.|..|-|=++++|..++.+. +.++-+.++|+|...+||-+..|
T Consensus       237 lSFS~dg~---------~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  237 LSFSHDGR---------MLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             EEeccCcc---------eeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence            99999986         89999999999999999999999987 78899999999999999877655

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.2e-31  Score=262.20  Aligned_cols=285  Identities=25%  Similarity=0.402  Sum_probs=245.7

Q ss_pred             eEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE
Q 008467          210 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL  289 (564)
Q Consensus       210 ~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~  289 (564)
                      ..+.||...|.++++|.+...++||+ .+.++||+..+.+++.+             .      ....+.+..|-|.+++
T Consensus       367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRT-------------i------~~~y~l~~~Fvpgd~~  426 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRT-------------I------TCGYILASKFVPGDRY  426 (888)
T ss_pred             eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEE-------------e------ccccEEEEEecCCCce
Confidence            45679999999999999999999876 46799999887654321             1      1236889999999999


Q ss_pred             EEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC-----cceeEEEee-------
Q 008467          290 LATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT-----EEWKQQFEF-------  356 (564)
Q Consensus       290 l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~-----~~~~~~~~~-------  356 (564)
                      +++|...|.+.++|.. ..+..+...|.+.|++++.+|++..+++||.|++|++||..-     +...+.+..       
T Consensus       427 Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe  506 (888)
T KOG0306|consen  427 IVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE  506 (888)
T ss_pred             EEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe
Confidence            9999999999999975 456667789999999999999999999999999999999642     211111211       


Q ss_pred             cccCeEEEEcCCCceE-EEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeee
Q 008467          357 HSGPTLDVDWRNNVSF-ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH  435 (564)
Q Consensus       357 ~~~~~~~~~~~~~~~~-~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~  435 (564)
                      -...++++...++..| +.+--|+++.+|-+++-+-...+.||.-+|.|+..+||+++++|||.|..|+||-+.-+.|-.
T Consensus       507 l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHK  586 (888)
T KOG0306|consen  507 LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHK  586 (888)
T ss_pred             ccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhh
Confidence            1345778888766555 666789999999999988888999999999999999999999999999999999999999999


Q ss_pred             ecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCc
Q 008467          436 DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKS  515 (564)
Q Consensus       436 ~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~  515 (564)
                      .+.+|...|+++.|.|..         +++.+|+.|+.|+-||-.+-+++..+.+|...|++++.+|+|.|++++|.|.+
T Consensus       587 S~fAHdDSvm~V~F~P~~---------~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~s  657 (888)
T KOG0306|consen  587 SFFAHDDSVMSVQFLPKT---------HLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKS  657 (888)
T ss_pred             hhhcccCceeEEEEcccc---------eeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCce
Confidence            999999999999999964         37889999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCC
Q 008467          516 MHIWSLKE  523 (564)
Q Consensus       516 i~iw~~~~  523 (564)
                      |++|...+
T Consensus       658 IRlwE~td  665 (888)
T KOG0306|consen  658 IRLWERTD  665 (888)
T ss_pred             eEeeeccC
Confidence            99998755

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=5.8e-32  Score=252.82  Aligned_cols=290  Identities=23%  Similarity=0.390  Sum_probs=234.5

Q ss_pred             eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEE-e-ecccc--ccCCCCeEEEEEC
Q 008467          209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLK-H-VKGRT--NEKSKDVTTLDWN  284 (564)
Q Consensus       209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~--~~~~~~V~~l~~s  284 (564)
                      +..+..|.-+|.+|+++|++++.++++.||+|.-|++.++.........+   .+++ + .+...  ..|.+.|.+++.|
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~---ev~k~~~~~~k~~r~~h~keil~~avS  211 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD---EVLKSHGNPLKESRKGHVKEILTLAVS  211 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccc---hhhhhccCCCCcccccccceeEEEEEc
Confidence            46778899999999999999999999999999999998876432111110   0001 0 00011  2567889999999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEE
Q 008467          285 GEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD  363 (564)
Q Consensus       285 ~~g~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~  363 (564)
                      +||++||+|+.|..|.||+... .....+.+|.++|.+++|-...+.+++++.|++|++|++....+             
T Consensus       212 ~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~-------------  278 (479)
T KOG0299|consen  212 SDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY-------------  278 (479)
T ss_pred             CCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH-------------
Confidence            9999999999999999999764 45667899999999999999989999999999999999875443             


Q ss_pred             EEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeeccccccc
Q 008467          364 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE  443 (564)
Q Consensus       364 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~  443 (564)
                                                  +.++.||.+.|.+|.-..-++.+-.|+.|+++++|++... ....+++|.+.
T Consensus       279 ----------------------------vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~s  329 (479)
T KOG0299|consen  279 ----------------------------VETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGS  329 (479)
T ss_pred             ----------------------------HHHHhCCccceeeechhcccceEEeccccceeEEEecccc-ceeeeeCCCCC
Confidence                                        3456788888888887777777777779999999999433 33467888889


Q ss_pred             EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEe-CC-----------CCCEEEEEEcCCCCEEEEEe
Q 008467          444 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN-GH-----------REPVYSLAFSPTGEYLASGS  511 (564)
Q Consensus       444 i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h-----------~~~i~~~~~spdg~~lasgs  511 (564)
                      +-|++|..+.          .+++||.||.|.+|++.+.+++++.. +|           ...|++++..|...++|+||
T Consensus       330 idcv~~In~~----------HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS  399 (479)
T KOG0299|consen  330 IDCVAFINDE----------HFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGS  399 (479)
T ss_pred             eeeEEEeccc----------ceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecC
Confidence            9999997654          48899999999999999888887653 22           12789999999999999999


Q ss_pred             CCCcEEEEeCCCC----eEEEEEecCCCEEEEEEccCCCEEEEEEc
Q 008467          512 LDKSMHIWSLKEG----KIVKTYTGNGGIFEVCWNKEGDKIAACFA  553 (564)
Q Consensus       512 ~dg~i~iw~~~~~----~~~~~~~~~~~i~~~~w~~~g~~la~~~~  553 (564)
                      .+|.|++|.+.+|    .++..+.-.+-|++|+|+++|++|++|.+
T Consensus       400 ~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiG  445 (479)
T KOG0299|consen  400 WSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIG  445 (479)
T ss_pred             CCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEecc
Confidence            9999999999988    45666666788999999999998777743

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=7.3e-33  Score=255.30  Aligned_cols=290  Identities=22%  Similarity=0.372  Sum_probs=244.1

Q ss_pred             eecCCceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEE
Q 008467          203 EIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLD  282 (564)
Q Consensus       203 ~~~~~~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~  282 (564)
                      .+|......+..|.+.|..+.|-++...|+||+.|..|++|++...+..               ..+...+....|++++
T Consensus       162 ~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~---------------~~~tLaGs~g~it~~d  226 (459)
T KOG0288|consen  162 TLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSE---------------LISTLAGSLGNITSID  226 (459)
T ss_pred             ccchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhh---------------hhhhhhccCCCcceee
Confidence            4666667788999999999999999999999999999999998654311               1111223456799999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCe
Q 008467          283 WNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT  361 (564)
Q Consensus       283 ~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~  361 (564)
                      |.+++..++.++.|+.+++|+.+ ..+..++.+|++.|++++|......+++|+.|.++++||+....+.+++.... ..
T Consensus       227 ~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S-~c  305 (459)
T KOG0288|consen  227 FDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGS-QC  305 (459)
T ss_pred             ecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccc-cc
Confidence            99999999999999999999986 46777899999999999999888889999999999999999877766543322 22


Q ss_pred             EEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccc-
Q 008467          362 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH-  440 (564)
Q Consensus       362 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~-  440 (564)
                      .++... ...++++..|+.|++||+....+......+. .|+++..++++..|.+++.|.++.+.|+++....+.+.+. 
T Consensus       306 nDI~~~-~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g  383 (459)
T KOG0288|consen  306 NDIVCS-ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEG  383 (459)
T ss_pred             cceEec-ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccc
Confidence            233222 5678899999999999999988888887765 9999999999999999999999999999999888877643 


Q ss_pred             ---cccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCC--CEEEEEEcCCCCEEEEEeCCCc
Q 008467          441 ---SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHRE--PVYSLAFSPTGEYLASGSLDKS  515 (564)
Q Consensus       441 ---~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~--~i~~~~~spdg~~lasgs~dg~  515 (564)
                         ....+.+.|+|++.         |+++||.||.|+||++.++++...+.....  .|++++|+|.|.+|++++.++.
T Consensus       384 ~k~asDwtrvvfSpd~~---------YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~  454 (459)
T KOG0288|consen  384 FKCASDWTRVVFSPDGS---------YVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKA  454 (459)
T ss_pred             cccccccceeEECCCCc---------eeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcc
Confidence               23367889999886         899999999999999999999888766554  4999999999999999999999


Q ss_pred             EEEE
Q 008467          516 MHIW  519 (564)
Q Consensus       516 i~iw  519 (564)
                      +.+|
T Consensus       455 v~lW  458 (459)
T KOG0288|consen  455 VTLW  458 (459)
T ss_pred             eEec
Confidence            9999

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.4e-31  Score=267.55  Aligned_cols=278  Identities=24%  Similarity=0.392  Sum_probs=245.4

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEE
Q 008467          275 SKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ  353 (564)
Q Consensus       275 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~  353 (564)
                      +..|..++|+|.-.+++++-.+|.|++||.. +.+...|..|.+||.++.|+|....|+||+.|..|++|+..+..+..+
T Consensus         9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclft   88 (1202)
T KOG0292|consen    9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFT   88 (1202)
T ss_pred             cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhh
Confidence            5678999999999999999999999999965 567778999999999999999999999999999999999999999999


Q ss_pred             EeecccCeEEEEcCCCc-eEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCe
Q 008467          354 FEFHSGPTLDVDWRNNV-SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK  432 (564)
Q Consensus       354 ~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~  432 (564)
                      +..|..-+..+.|+... -++++|+|.+|++|+..+.+.+..+.||...|.|.+|+|...+++|+|-|.+|||||+..-+
T Consensus        89 L~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLR  168 (1202)
T KOG0292|consen   89 LLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLR  168 (1202)
T ss_pred             hccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchh
Confidence            99999988888887665 56788999999999999999999999999999999999999999999999999999974210


Q ss_pred             ----------------------------e-eeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe
Q 008467          433 ----------------------------Y-VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK  483 (564)
Q Consensus       433 ----------------------------~-~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~  483 (564)
                                                  . -+.+.+|...|.-++|+|.-.         +++||+.|..|++|.+...+
T Consensus       169 kk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp---------liVSG~DDRqVKlWrmnetK  239 (1202)
T KOG0292|consen  169 KKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP---------LIVSGADDRQVKLWRMNETK  239 (1202)
T ss_pred             ccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc---------eEEecCCcceeeEEEecccc
Confidence                                        1 134567888899999998764         79999999999999886443


Q ss_pred             --EEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec-CCCEEEEEEccCCCEEEEEEcCCcEEEE
Q 008467          484 --LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVL  560 (564)
Q Consensus       484 --~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~-~~~i~~~~w~~~g~~la~~~~~~~v~v~  560 (564)
                        .+-++.+|..+|.++-|+|....|.+.|.|++|+|||....+.+++|.. +..-+-++-+|..+.+|+|..+| +.||
T Consensus       240 aWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsG-m~VF  318 (1202)
T KOG0292|consen  240 AWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSG-MIVF  318 (1202)
T ss_pred             ceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCc-eEEE
Confidence              2456789999999999999999999999999999999999999999964 56788999999999999996555 6666


Q ss_pred             Ee
Q 008467          561 DF  562 (564)
Q Consensus       561 ~~  562 (564)
                      -+
T Consensus       319 kl  320 (1202)
T KOG0292|consen  319 KL  320 (1202)
T ss_pred             EE
Confidence            54

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.6e-31  Score=262.78  Aligned_cols=283  Identities=21%  Similarity=0.364  Sum_probs=245.2

Q ss_pred             cCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEE
Q 008467          213 EGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLAT  292 (564)
Q Consensus       213 ~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~s  292 (564)
                      ...+..|-.++|||...+++++=-.|.|.+||..=+..                 ..+..+|.++|..++|+|+..+++|
T Consensus         6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tl-----------------i~rFdeHdGpVRgv~FH~~qplFVS   68 (1202)
T KOG0292|consen    6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTL-----------------IDRFDEHDGPVRGVDFHPTQPLFVS   68 (1202)
T ss_pred             hcccccccceecCCCCCEEEEeecCceeeeehhhhhhH-----------------HhhhhccCCccceeeecCCCCeEEe
Confidence            34557788999999999999999999999999753321                 1234567899999999999999999


Q ss_pred             EeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCC-Cc
Q 008467          293 GSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NV  370 (564)
Q Consensus       293 g~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~  370 (564)
                      |+.|-.|+||+.. .++..++.+|-.-|..+.|++.-.+|+|+|.|.||+||+..++.++..+..|.--+++..|++ ..
T Consensus        69 GGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptED  148 (1202)
T KOG0292|consen   69 GGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED  148 (1202)
T ss_pred             cCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccc
Confidence            9999999999965 456678999999999999999999999999999999999999999999999999999999987 67


Q ss_pred             eEEEEeCCCeEEEEEcCCCc-----------------------------eeeEecCCCcceEEEEECCCCCEEEEEeCCC
Q 008467          371 SFATSSTDNMIYVCKIGENR-----------------------------PIKTFAGHQGEVNCVKWDPTGSLLASCSDDV  421 (564)
Q Consensus       371 ~~~~~~~d~~i~~~~~~~~~-----------------------------~~~~~~~h~~~i~~v~~~~~~~~las~s~dg  421 (564)
                      .++++|-|.+|++||+..-+                             .-..+.||...|+-++|+|.-.+|+||++|.
T Consensus       149 lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDR  228 (1202)
T KOG0292|consen  149 LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDR  228 (1202)
T ss_pred             eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcc
Confidence            88999999999999985310                             1135679999999999999999999999999


Q ss_pred             cEEEEeCCCCe--eeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEE
Q 008467          422 TAKIWNMKQDK--YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLA  499 (564)
Q Consensus       422 ~i~iwd~~~~~--~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~  499 (564)
                      .|++|.++..+  .+.+.++|...|.++-|+|...         +++|.|.|++|||||+...+.+.+++......+.++
T Consensus       229 qVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~---------lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~la  299 (1202)
T KOG0292|consen  229 QVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQD---------LILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILA  299 (1202)
T ss_pred             eeeEEEeccccceeehhhhcccCCcceEEecCccc---------eeEecCCCccEEEEecccccceeeeeccCCeEEEEE
Confidence            99999987544  3567889999999999998643         788999999999999999999999987778899999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCC
Q 008467          500 FSPTGEYLASGSLDKSMHIWSLK  522 (564)
Q Consensus       500 ~spdg~~lasgs~dg~i~iw~~~  522 (564)
                      -+|..+++|+|-+.| +.+|.++
T Consensus       300 ahP~lNLfAAgHDsG-m~VFkle  321 (1202)
T KOG0292|consen  300 AHPELNLFAAGHDSG-MIVFKLE  321 (1202)
T ss_pred             ecCCcceeeeecCCc-eEEEEEc
Confidence            999999988765444 6677765

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=2.7e-31  Score=242.50  Aligned_cols=274  Identities=30%  Similarity=0.520  Sum_probs=228.4

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCC---EEEEeeCCCcEEEEECCCcce
Q 008467          274 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGD---YLLTGSCDKTAIVWDVKTEEW  350 (564)
Q Consensus       274 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~---~l~s~s~D~~v~iwd~~~~~~  350 (564)
                      |...|.++.-.  +..+++|++||.+|+|+..|+....+.+|.++|.++.|.-.+.   .|+++|.|.++++|-.+.++.
T Consensus       104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~  181 (423)
T KOG0313|consen  104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGEN  181 (423)
T ss_pred             chhhhhhhccc--CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchh
Confidence            34566666655  6899999999999999999999999999999999998865443   599999999999998776543


Q ss_pred             ----eEEEeecccCeEEEEc-CCCceEEEEeCCCeEEEEEcC-------------------------CCceeeEecCCCc
Q 008467          351 ----KQQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCKIG-------------------------ENRPIKTFAGHQG  400 (564)
Q Consensus       351 ----~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~i~~~~~~-------------------------~~~~~~~~~~h~~  400 (564)
                          ......|..++-++.- .+...|++++-|.++.+|+..                         ...|+.++.||..
T Consensus       182 ~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~  261 (423)
T KOG0313|consen  182 KVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTE  261 (423)
T ss_pred             hhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccccc
Confidence                2334578888888884 567899999999999999921                         1236788999999


Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC
Q 008467          401 EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE  480 (564)
Q Consensus       401 ~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~  480 (564)
                      .|.++.|++ ...+.++|.|.+|+.||+.+++...++.. ...+.++.++|...         +|++|+.|..|++||.+
T Consensus       262 ~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~---------Ll~~gssdr~irl~DPR  330 (423)
T KOG0313|consen  262 PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSK---------LLASGSSDRHIRLWDPR  330 (423)
T ss_pred             ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccc---------eeeecCCCCceeecCCC
Confidence            999999997 67788999999999999999988877654 46789999988654         79999999999999998


Q ss_pred             CCe---EEEEEeCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCe-EEEEEec-CCCEEEEEEccCCCEEEEEEcC
Q 008467          481 LGK---LLYSLNGHREPVYSLAFSPTGE-YLASGSLDKSMHIWSLKEGK-IVKTYTG-NGGIFEVCWNKEGDKIAACFAN  554 (564)
Q Consensus       481 ~~~---~~~~~~~h~~~i~~~~~spdg~-~lasgs~dg~i~iw~~~~~~-~~~~~~~-~~~i~~~~w~~~g~~la~~~~~  554 (564)
                      ++.   ..+++.+|...|.++.|+|... .|++|+.|+++++||+++-+ .+..+.+ +..|+++.|+ +|..+++|+.|
T Consensus       331 ~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD  409 (423)
T KOG0313|consen  331 TGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGAD  409 (423)
T ss_pred             CCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCc
Confidence            753   4578899999999999999874 57899999999999999876 5555544 4569999997 45688899999


Q ss_pred             CcEEEEE
Q 008467          555 HTVCVLD  561 (564)
Q Consensus       555 ~~v~v~~  561 (564)
                      .++.|+.
T Consensus       410 ~~l~i~~  416 (423)
T KOG0313|consen  410 NKLRIFK  416 (423)
T ss_pred             ceEEEec
Confidence            9999874

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.8e-31  Score=245.84  Aligned_cols=279  Identities=23%  Similarity=0.395  Sum_probs=232.5

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC----CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCc
Q 008467          273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN----GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE  348 (564)
Q Consensus       273 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~----~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~  348 (564)
                      .|...|..+.||++|++||||+.|.+..+|.+.    -+++.++.+|..+|..+.|+||.++|++|+.|..+++||+.+|
T Consensus       222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tg  301 (519)
T KOG0293|consen  222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTG  301 (519)
T ss_pred             hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcc
Confidence            467889999999999999999999999999753    2456788999999999999999999999999999999999999


Q ss_pred             ceeEEEeec-ccCeEEEEcCC-CceEEEEeCCCeEEEEEcCCCceeeEecCCC-cceEEEEECCCCCEEEEEeCCCcEEE
Q 008467          349 EWKQQFEFH-SGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-GEVNCVKWDPTGSLLASCSDDVTAKI  425 (564)
Q Consensus       349 ~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-~~i~~v~~~~~~~~las~s~dg~i~i  425 (564)
                      .....+... ...+.+..|.+ ...|++++.|+.+..|+.+.+. ...+.|-. ..|.+++..+||+.+++...|..|++
T Consensus       302 d~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l  380 (519)
T KOG0293|consen  302 DLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRL  380 (519)
T ss_pred             hhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEEEEEecccceee
Confidence            988776544 45677888854 5689999999999999997654 23334332 35889999999999999999999999


Q ss_pred             EeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCC--EEEEEEcC-
Q 008467          426 WNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREP--VYSLAFSP-  502 (564)
Q Consensus       426 wd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~--i~~~~~sp-  502 (564)
                      ++..+...+..+ ....+|+++..+.++.         ++++.-.+..|++||++..+.+..+.||...  |-.-+|.- 
T Consensus       381 ~~~e~~~dr~li-se~~~its~~iS~d~k---------~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~  450 (519)
T KOG0293|consen  381 YNREARVDRGLI-SEEQPITSFSISKDGK---------LALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGG  450 (519)
T ss_pred             echhhhhhhccc-cccCceeEEEEcCCCc---------EEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCC
Confidence            998765544333 3456899999988775         5556667899999999988888888888765  33345653 


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEEecCC-CEEEEEEccCC-CEEEEEEcCCcEEEEEe
Q 008467          503 TGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEG-DKIAACFANHTVCVLDF  562 (564)
Q Consensus       503 dg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~-~i~~~~w~~~g-~~la~~~~~~~v~v~~~  562 (564)
                      +..++|+||.|+.|+||+..+|+++..+.++. .++.++|+|.. .++|+++.||+|+||..
T Consensus       451 ~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~  512 (519)
T KOG0293|consen  451 NDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGP  512 (519)
T ss_pred             CcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence            45899999999999999999999999999875 58999999976 58899999999999964

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.3e-30  Score=256.85  Aligned_cols=327  Identities=23%  Similarity=0.351  Sum_probs=248.8

Q ss_pred             cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC
Q 008467          217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD  296 (564)
Q Consensus       217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d  296 (564)
                      .+|+|++-+|+.-+||.|-.||.|+||++.+...             +    -..++|...|+++.|...|..|+|||.|
T Consensus        66 ~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~-------------~----~tfngHK~AVt~l~fd~~G~rlaSGskD  128 (888)
T KOG0306|consen   66 AEVTCLRSSDDILLLAVGYADGSVQIFSLESEEI-------------L----ITFNGHKAAVTTLKFDKIGTRLASGSKD  128 (888)
T ss_pred             ceEEEeeccCCcceEEEEecCceEEeeccCCCce-------------e----eeecccccceEEEEEcccCceEeecCCC
Confidence            5789998889999999999999999999875421             0    1124567899999999999999999999


Q ss_pred             CeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccC---------------
Q 008467          297 GQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP---------------  360 (564)
Q Consensus       297 g~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~---------------  360 (564)
                      +.|.+||.-+ .-...+.+|+..|+...|....+++++.|.|+.+++||+.+..+..+.-.|.+.               
T Consensus       129 t~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~  208 (888)
T KOG0306|consen  129 TDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAG  208 (888)
T ss_pred             ccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEe
Confidence            9999999754 345689999999999999988899999999999999999875433221111000               


Q ss_pred             --------------------------------------------------------------------------------
Q 008467          361 --------------------------------------------------------------------------------  360 (564)
Q Consensus       361 --------------------------------------------------------------------------------  360 (564)
                                                                                                      
T Consensus       209 ~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k  288 (888)
T KOG0306|consen  209 TDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLK  288 (888)
T ss_pred             cCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHH
Confidence                                                                                            


Q ss_pred             ----------------------------------eEEEEcC---------------------------------------
Q 008467          361 ----------------------------------TLDVDWR---------------------------------------  367 (564)
Q Consensus       361 ----------------------------------~~~~~~~---------------------------------------  367 (564)
                                                        +.+++|.                                       
T Consensus       289 ~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~  368 (888)
T KOG0306|consen  289 RAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIE  368 (888)
T ss_pred             HhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceee
Confidence                                              0001110                                       


Q ss_pred             --------------CCceEEEEeCCCeEEEEEcCCCceeeE---------------------------------------
Q 008467          368 --------------NNVSFATSSTDNMIYVCKIGENRPIKT---------------------------------------  394 (564)
Q Consensus       368 --------------~~~~~~~~~~d~~i~~~~~~~~~~~~~---------------------------------------  394 (564)
                                    .+..++.++..+.+.+|+..+.+.+++                                       
T Consensus       369 ~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~E  448 (888)
T KOG0306|consen  369 IGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVE  448 (888)
T ss_pred             eccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhh
Confidence                          001123344556788888776554433                                       


Q ss_pred             -ecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCC-------Ceeeeec-----ccccccEEEEEEccCCCCC-----
Q 008467          395 -FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ-------DKYVHDL-----REHSKEIYTIRWSPTGSGT-----  456 (564)
Q Consensus       395 -~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~-------~~~~~~~-----~~~~~~i~~i~~~p~~~~~-----  456 (564)
                       ...|.+.|.+++.+||++.++|||.|.+|++||..-       .+.+-.+     -.-...|.++.+||++.-.     
T Consensus       449 ti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLL  528 (888)
T KOG0306|consen  449 TIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLL  528 (888)
T ss_pred             hhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEec
Confidence             246889999999999999999999999999998631       1000000     0112345555555554310     


Q ss_pred             -----------------------------CCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEE
Q 008467          457 -----------------------------NNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYL  507 (564)
Q Consensus       457 -----------------------------~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~l  507 (564)
                                                   .+|+. .+++|||.|.+|+||-++-|.|-.++-+|.+.|.++.|-|...++
T Consensus       529 dnTVkVyflDtlKFflsLYGHkLPV~smDIS~DS-klivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~F  607 (888)
T KOG0306|consen  529 DNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDS-KLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLF  607 (888)
T ss_pred             cCeEEEEEecceeeeeeecccccceeEEeccCCc-CeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeE
Confidence                                         01222 268999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCcEEEEeCCCCeEEEEEecC-CCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467          508 ASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLD  561 (564)
Q Consensus       508 asgs~dg~i~iw~~~~~~~~~~~~~~-~~i~~~~w~~~g~~la~~~~~~~v~v~~  561 (564)
                      .++|.|+.|+-||-..-+.++.+.++ ..|++++-+|.|.++++|+.|.++++|.
T Consensus       608 Ft~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE  662 (888)
T KOG0306|consen  608 FTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE  662 (888)
T ss_pred             EEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence            99999999999999998888888875 4699999999999999999999999985

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=4.4e-30  Score=224.19  Aligned_cols=280  Identities=24%  Similarity=0.382  Sum_probs=231.5

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEC-CCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCccee
Q 008467          273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK  351 (564)
Q Consensus       273 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~  351 (564)
                      +|..+++.+.++.+|.+|.+++.|..+.||-. +|..+-++.+|+++|+++..+-+.+++++|++|.++++||+.+|+.+
T Consensus         8 GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~l   87 (327)
T KOG0643|consen    8 GHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQL   87 (327)
T ss_pred             cCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEE
Confidence            46788999999999999999999999999975 89999999999999999999999999999999999999999999988


Q ss_pred             EEEeecccCeEEEEcCCCceEEEEe------CCCeEEEEEcC-------CCceeeEecCCCcceEEEEECCCCCEEEEEe
Q 008467          352 QQFEFHSGPTLDVDWRNNVSFATSS------TDNMIYVCKIG-------ENRPIKTFAGHQGEVNCVKWDPTGSLLASCS  418 (564)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~i~~~~~~-------~~~~~~~~~~h~~~i~~v~~~~~~~~las~s  418 (564)
                      ..+.... ++..++|.....++..+      ..+.|.++++.       ...|+..+..+.+.++.+-|.|-+++|++|.
T Consensus        88 a~~k~~~-~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Gh  166 (327)
T KOG0643|consen   88 ATWKTNS-PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGH  166 (327)
T ss_pred             EEeecCC-eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEec
Confidence            8776533 45556664433333322      23467888887       4567888888999999999999999999999


Q ss_pred             CCCcEEEEeCCCC-eeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEE
Q 008467          419 DDVTAKIWNMKQD-KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYS  497 (564)
Q Consensus       419 ~dg~i~iwd~~~~-~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~  497 (564)
                      +||.|.+||.+++ ..+...+.|...|..++++|+..         +++++|.|.+-++||+++-+++.++. ...||++
T Consensus       167 e~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T---------~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~  236 (327)
T KOG0643|consen  167 EDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT---------YFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNT  236 (327)
T ss_pred             CCCcEEEEEcccCceeeechhhhccccccccccCCcc---------eEEecccCccceeeeccceeeEEEee-ecccccc
Confidence            9999999999997 45666678999999999999875         89999999999999999999988887 4579999


Q ss_pred             EEEcCCCCEEEEEeCCCc--EEEEeCCCCeEEE------------EEec-CCCEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467          498 LAFSPTGEYLASGSLDKS--MHIWSLKEGKIVK------------TYTG-NGGIFEVCWNKEGDKIAACFANHTVCVLDF  562 (564)
Q Consensus       498 ~~~spdg~~lasgs~dg~--i~iw~~~~~~~~~------------~~~~-~~~i~~~~w~~~g~~la~~~~~~~v~v~~~  562 (564)
                      .+++|.-.+++.|+...-  |.--+.+.|+...            .+.+ -++|++++|+|+|+..++|..||.|+|..|
T Consensus       237 aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~F  316 (327)
T KOG0643|consen  237 AAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHF  316 (327)
T ss_pred             eecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEe
Confidence            999999888887765432  3333334443322            2223 367999999999999999999999999876


Q ss_pred             e
Q 008467          563 R  563 (564)
Q Consensus       563 ~  563 (564)
                      .
T Consensus       317 d  317 (327)
T KOG0643|consen  317 D  317 (327)
T ss_pred             c
Confidence            4

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.98  E-value=2.1e-30  Score=263.93  Aligned_cols=271  Identities=30%  Similarity=0.516  Sum_probs=240.6

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEECC-CceeEe-ecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeE
Q 008467          275 SKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCT-LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ  352 (564)
Q Consensus       275 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~  352 (564)
                      ...+++..|.  +.++++++.+++|++|+.. +..... +.+|.+.|+++++..-+..+++|+.|+++++||..++.+..
T Consensus       208 ~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~  285 (537)
T KOG0274|consen  208 DHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTH  285 (537)
T ss_pred             cchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEE
Confidence            4568888888  5689999999999999964 455555 99999999999999878899999999999999999999999


Q ss_pred             EEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCe
Q 008467          353 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK  432 (564)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~  432 (564)
                      .+..|...+..++-. ...+++++.|.+|++|++.++..+..+.||.+.|+++..+  +.++++|+.|++|++||..+++
T Consensus       286 ~l~gh~stv~~~~~~-~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~  362 (537)
T KOG0274|consen  286 SLQGHTSSVRCLTID-PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGK  362 (537)
T ss_pred             EecCCCceEEEEEcc-CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhce
Confidence            999999888777653 3456668899999999999999999999999999999997  8899999999999999999999


Q ss_pred             eeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEe
Q 008467          433 YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGS  511 (564)
Q Consensus       433 ~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~~~~spdg~~lasgs  511 (564)
                      +++++++|...|+++.+.+.          ..+++|+.|++|++||+++. +++.++.+|..-+..+.+  .+++|++++
T Consensus       363 cl~sl~gH~~~V~sl~~~~~----------~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~  430 (537)
T KOG0274|consen  363 CLKSLSGHTGRVYSLIVDSE----------NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSS  430 (537)
T ss_pred             eeeeecCCcceEEEEEecCc----------ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEecc
Confidence            99999999999999987653          16899999999999999999 999999999988866655  678999999


Q ss_pred             CCCcEEEEeCCCCeEEEEEecC--CCEEEEEEccCCCEEEEEEcCCcEEEEEeeC
Q 008467          512 LDKSMHIWSLKEGKIVKTYTGN--GGIFEVCWNKEGDKIAACFANHTVCVLDFRM  564 (564)
Q Consensus       512 ~dg~i~iw~~~~~~~~~~~~~~--~~i~~~~w~~~g~~la~~~~~~~v~v~~~~~  564 (564)
                      .|++|++||..++++++++.+.  +.|..+++.  -..+++++.++.+.+||+++
T Consensus       431 aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~  483 (537)
T KOG0274|consen  431 ADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRS  483 (537)
T ss_pred             ccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEeccc
Confidence            9999999999999999999873  678888887  45777778999999999974

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=7.5e-31  Score=227.39  Aligned_cols=275  Identities=23%  Similarity=0.392  Sum_probs=222.8

Q ss_pred             EEEEECC-CCCEEEEEe-------CCCeEEEEECC-CceeEee--cCCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECC
Q 008467          279 TTLDWNG-EGTLLATGS-------YDGQARIWSTN-GDLKCTL--SKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVK  346 (564)
Q Consensus       279 ~~l~~s~-~g~~l~sg~-------~dg~i~vw~~~-~~~~~~~--~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~  346 (564)
                      .++.||| -.++||.+.       ..|.+.|-+.. +.-+..+  -.-...++.++|+++. +.+++++.||++++||+.
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~   91 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT   91 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence            4677887 223344332       35788888874 2222221  2345789999999975 678999999999999964


Q ss_pred             C-cceeEEEeecccCeEEEEcC--CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC-CCEEEEEeCCCc
Q 008467          347 T-EEWKQQFEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVT  422 (564)
Q Consensus       347 ~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~-~~~las~s~dg~  422 (564)
                      . ...+..+.-|...+.+++|.  ....|++++-|++|++|+...++.+.+|.||..-|..++|+|. .++++++|.|++
T Consensus        92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~  171 (311)
T KOG0277|consen   92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT  171 (311)
T ss_pred             CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence            3 34566778889999999995  4567899999999999999999999999999999999999994 689999999999


Q ss_pred             EEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEEeCCCCCEEEEEEc
Q 008467          423 AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFS  501 (564)
Q Consensus       423 i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~~~~s  501 (564)
                      +++||++.......+..|..+|.+..|+.-..        .+|+||+.|+.||+||+++- ..+..+.+|.-.|..++||
T Consensus       172 l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~--------~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~S  243 (311)
T KOG0277|consen  172 LRLWDVRSPGKFMSIEAHNSEILCCDWSKYNH--------NVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFS  243 (311)
T ss_pred             EEEEEecCCCceeEEEeccceeEeecccccCC--------cEEEecCCCceEEEEehhhccccceeecCCceEEEEEecC
Confidence            99999986555555889999999999986542        48999999999999999874 4588999999999999999


Q ss_pred             CCC-CEEEEEeCCCcEEEEeCCCC-eEEEEEecCCC-EEEEEEcc-CCCEEEEEEcCCcEEEEE
Q 008467          502 PTG-EYLASGSLDKSMHIWSLKEG-KIVKTYTGNGG-IFEVCWNK-EGDKIAACFANHTVCVLD  561 (564)
Q Consensus       502 pdg-~~lasgs~dg~i~iw~~~~~-~~~~~~~~~~~-i~~~~w~~-~g~~la~~~~~~~v~v~~  561 (564)
                      |.. ..||+++.|-+++|||...+ .++.++..+.. +..+.||+ ++..+|.++.|+.+.||+
T Consensus       244 ph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  244 PHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN  307 (311)
T ss_pred             cchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence            975 78899999999999999854 34555555544 67899998 567999999999999997

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=1.4e-30  Score=225.78  Aligned_cols=279  Identities=23%  Similarity=0.404  Sum_probs=225.6

Q ss_pred             EEEEECCC-CCEEEEE-------ECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC-CCEE
Q 008467          220 CACAWSPA-GSLLASG-------SGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE-GTLL  290 (564)
Q Consensus       220 ~~~~~sp~-~~~lasg-------s~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~-g~~l  290 (564)
                      .++.|||- .++||.+       .+.|.+.|-++..+..+          ......     .-...+..++|++. .+.+
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi----------~e~~s~-----d~~D~LfdV~Wse~~e~~~   76 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGI----------QECQSY-----DTEDGLFDVAWSENHENQV   76 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCe----------EEEEee-----ecccceeEeeecCCCcceE
Confidence            46789993 3333332       24678888887533211          111111     12456889999985 4688


Q ss_pred             EEEeCCCeEEEEECC--CceeEeecCCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcC
Q 008467          291 ATGSYDGQARIWSTN--GDLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR  367 (564)
Q Consensus       291 ~sg~~dg~i~vw~~~--~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  367 (564)
                      ++++.||.+++||..  ...+..++.|...|.++.|++.. ..++++|.|++|++|+.....-+.+|..|...++...|.
T Consensus        77 ~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~s  156 (311)
T KOG0277|consen   77 IAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFS  156 (311)
T ss_pred             EEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecC
Confidence            899999999999954  34566788999999999999865 558889999999999999888899999999999999886


Q ss_pred             C--CceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCe-eeeeccccccc
Q 008467          368 N--NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDK-YVHDLREHSKE  443 (564)
Q Consensus       368 ~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~-~~~~las~s~dg~i~iwd~~~~~-~~~~~~~~~~~  443 (564)
                      +  ...|+++++|+++++||++.......+..|..+|.|+.|+. +..+|+||+.|+.||+||++.-+ ++..+.+|.-.
T Consensus       157 p~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~A  236 (311)
T KOG0277|consen  157 PHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLA  236 (311)
T ss_pred             CCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceE
Confidence            5  46899999999999999987554445889999999999986 56789999999999999998754 57788999999


Q ss_pred             EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEEeCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeC
Q 008467          444 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSP-TGEYLASGSLDKSMHIWSL  521 (564)
Q Consensus       444 i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~~~~sp-dg~~lasgs~dg~i~iw~~  521 (564)
                      |..++|+|...        .+|||+|.|-++||||...+ .++.+...|+.-+..+.||+ ++.++|+++.|..++||+.
T Consensus       237 VRkvk~Sph~~--------~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  237 VRKVKFSPHHA--------SLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             EEEEecCcchh--------hHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            99999999764        37999999999999998844 45566777888899999998 4689999999999999984

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=3.2e-31  Score=244.45  Aligned_cols=275  Identities=22%  Similarity=0.355  Sum_probs=234.3

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCc---eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcc
Q 008467          273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE  349 (564)
Q Consensus       273 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~  349 (564)
                      .|...|..+.|-++...|++|+.|..|++|++.+.   ...++.+-.++|+++.|.+++.++++++.|+.+++|++....
T Consensus       173 ~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r  252 (459)
T KOG0288|consen  173 AHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLR  252 (459)
T ss_pred             ccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchh
Confidence            34567899999999899999999999999998764   455778888999999999999999999999999999999999


Q ss_pred             eeEEEeecccCeEEEEcCCCc-eEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeC
Q 008467          350 WKQQFEFHSGPTLDVDWRNNV-SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNM  428 (564)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~  428 (564)
                      ...++..|...+..+.+.-.. ..++++.|.+|..||+....+.+++.. .+.++.|..+  ...++||..|++||+||.
T Consensus       253 ~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~DkkvRfwD~  329 (459)
T KOG0288|consen  253 LRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--ISDVISGHFDKKVRFWDI  329 (459)
T ss_pred             hhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cccccceEec--ceeeeecccccceEEEec
Confidence            999999999999999886544 489999999999999988766655431 2334555554  567889999999999999


Q ss_pred             CCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCC----CCCEEEEEEcCCC
Q 008467          429 KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH----REPVYSLAFSPTG  504 (564)
Q Consensus       429 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h----~~~i~~~~~spdg  504 (564)
                      ++..++..+..+. .|+++..++++.         -|.+++.|.++.+.|+++......+...    ....+.+.|||++
T Consensus       330 Rs~~~~~sv~~gg-~vtSl~ls~~g~---------~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~  399 (459)
T KOG0288|consen  330 RSADKTRSVPLGG-RVTSLDLSMDGL---------ELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDG  399 (459)
T ss_pred             cCCceeeEeecCc-ceeeEeeccCCe---------EEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCC
Confidence            9999888877665 899999998875         4677899999999999988776665431    1237899999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEEec---CCCEEEEEEccCCCEEEEEEcCCcEEEE
Q 008467          505 EYLASGSLDKSMHIWSLKEGKIVKTYTG---NGGIFEVCWNKEGDKIAACFANHTVCVL  560 (564)
Q Consensus       505 ~~lasgs~dg~i~iw~~~~~~~~~~~~~---~~~i~~~~w~~~g~~la~~~~~~~v~v~  560 (564)
                      .|+|+||.||.|+||++.+|++.+....   +.+|++++|+|.|..|+++..++.+++|
T Consensus       400 ~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  400 SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             ceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence            9999999999999999999999887754   3369999999999999999999999988

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=1.1e-29  Score=258.54  Aligned_cols=285  Identities=29%  Similarity=0.472  Sum_probs=247.3

Q ss_pred             EccC-CccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE
Q 008467          211 ILEG-HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL  289 (564)
Q Consensus       211 ~l~~-h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~  289 (564)
                      .+.+ |...+.+..|+  +.++.+|+.|+++++|+..++..                ......+|.+.|.++++..-+.+
T Consensus       202 ~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~----------------i~~~l~GH~g~V~~l~~~~~~~~  263 (537)
T KOG0274|consen  202 VLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYL----------------ILTRLVGHFGGVWGLAFPSGGDK  263 (537)
T ss_pred             eecccCcchhhhheee--cCeEEecCCCceeEEeecccceE----------------EEeeccCCCCCceeEEEecCCCE
Confidence            3444 56677888888  67889999999999999876532                11123456788999999988899


Q ss_pred             EEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCC
Q 008467          290 LATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN  368 (564)
Q Consensus       290 l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  368 (564)
                      +++|+.|.++++||.. |.....+.+|.+.|.++...  ...+++||.|.+|++|++.++.++..+..|.++|.++... 
T Consensus       264 lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~-  340 (537)
T KOG0274|consen  264 LVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD-  340 (537)
T ss_pred             EEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec-
Confidence            9999999999999964 77888999999999998755  4578889999999999999999999999899999999887 


Q ss_pred             CceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-eeeeecccccccEEEE
Q 008467          369 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD-KYVHDLREHSKEIYTI  447 (564)
Q Consensus       369 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~-~~~~~~~~~~~~i~~i  447 (564)
                      ...+++++.|++|.+|+....+++..+.||.+.|.++.+.+. ..+++|+.|++|++||+.+. +++..+..|...+..+
T Consensus       341 ~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l  419 (537)
T KOG0274|consen  341 EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSL  419 (537)
T ss_pred             CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccc
Confidence            667888999999999999999999999999999999988765 88999999999999999999 9999999999888766


Q ss_pred             EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeC-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE
Q 008467          448 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG-HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI  526 (564)
Q Consensus       448 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~  526 (564)
                      .+..           .+|++++.|++|++||...++++.++.+ |...|..+++.  ...+++++.||++++||++++++
T Consensus       420 ~~~~-----------~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~  486 (537)
T KOG0274|consen  420 LLRD-----------NFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTL  486 (537)
T ss_pred             cccc-----------ceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCch
Confidence            5533           2689999999999999999999999998 67889998886  56788899999999999999988


Q ss_pred             EEEE
Q 008467          527 VKTY  530 (564)
Q Consensus       527 ~~~~  530 (564)
                      ...+
T Consensus       487 ~~~l  490 (537)
T KOG0274|consen  487 IRTL  490 (537)
T ss_pred             hhhh
Confidence            7755

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.97  E-value=1.9e-29  Score=246.68  Aligned_cols=335  Identities=23%  Similarity=0.413  Sum_probs=265.4

Q ss_pred             eEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE
Q 008467          210 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL  289 (564)
Q Consensus       210 ~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~  289 (564)
                      +++.||.+.|+++.|+|.+..|+|+|.|.++.||...+..          .+++..-..+...+.........|+|+++.
T Consensus       261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~t----------GiWv~~vRlGe~gg~a~GF~g~lw~~n~~~  330 (764)
T KOG1063|consen  261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENT----------GIWVDVVRLGEVGGSAGGFWGGLWSPNSNV  330 (764)
T ss_pred             hhhcCcccceEEEEEccchhhheecccCcceEEEecCCcc----------ceEEEEEEeecccccccceeeEEEcCCCCE
Confidence            4667999999999999999999999999999999865321          112222222333344556889999999999


Q ss_pred             EEEEeCCCeEEEEECCC----ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC--cceeE--EEeecccCe
Q 008467          290 LATGSYDGQARIWSTNG----DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT--EEWKQ--QFEFHSGPT  361 (564)
Q Consensus       290 l~sg~~dg~i~vw~~~~----~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~--~~~~~--~~~~~~~~~  361 (564)
                      +++-++.|-.++|....    .....+.+|.+.|..+.|+|.|.+|++.|.|.|-|++-...  .++..  ..+.|.-..
T Consensus       331 ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl  410 (764)
T KOG1063|consen  331 IIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDL  410 (764)
T ss_pred             EEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccc
Confidence            99999999999998333    23345789999999999999999999999999999996541  12222  234566677


Q ss_pred             EEEEcCC-CceEEEEeCCCeEEEEEcCC--------------------------------Cce-----------------
Q 008467          362 LDVDWRN-NVSFATSSTDNMIYVCKIGE--------------------------------NRP-----------------  391 (564)
Q Consensus       362 ~~~~~~~-~~~~~~~~~d~~i~~~~~~~--------------------------------~~~-----------------  391 (564)
                      .++.+.+ +..|+++.....+++++...                                +++                 
T Consensus       411 ~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~e  490 (764)
T KOG1063|consen  411 TCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAE  490 (764)
T ss_pred             eeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeee
Confidence            7888877 88899988888888875311                                000                 


Q ss_pred             ---------------------------eeEecCCCcceEEEEECCCCCEEEEEeCCC-----cEEEEeCCCCeeeeeccc
Q 008467          392 ---------------------------IKTFAGHQGEVNCVKWDPTGSLLASCSDDV-----TAKIWNMKQDKYVHDLRE  439 (564)
Q Consensus       392 ---------------------------~~~~~~h~~~i~~v~~~~~~~~las~s~dg-----~i~iwd~~~~~~~~~~~~  439 (564)
                                                 +..+.||..+|.|++.+|+++++||+....     .|++|+..+...+..+..
T Consensus       491 t~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~  570 (764)
T KOG1063|consen  491 TPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG  570 (764)
T ss_pred             cccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc
Confidence                                       122458889999999999999999998754     589999999988889999


Q ss_pred             ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE----EEEEeCCCCCEEEEEEcCCCCEEEEEeCCCc
Q 008467          440 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL----LYSLNGHREPVYSLAFSPTGEYLASGSLDKS  515 (564)
Q Consensus       440 ~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~h~~~i~~~~~spdg~~lasgs~dg~  515 (564)
                      |+-.|+.++|+|++.         +|++.|.|.++.+|.......    ....+.|+.-|.+..|+|++.++||+|.|++
T Consensus       571 HsLTVT~l~FSpdg~---------~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~  641 (764)
T KOG1063|consen  571 HSLTVTRLAFSPDGR---------YLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKK  641 (764)
T ss_pred             cceEEEEEEECCCCc---------EEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCce
Confidence            999999999999986         899999999999998754322    2236789999999999999999999999999


Q ss_pred             EEEEeCCCC--eEEE---EEecCCCEEEEEEcc-----CCCEEEEEEcCCcEEEEEee
Q 008467          516 MHIWSLKEG--KIVK---TYTGNGGIFEVCWNK-----EGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       516 i~iw~~~~~--~~~~---~~~~~~~i~~~~w~~-----~g~~la~~~~~~~v~v~~~~  563 (564)
                      |++|...+.  +.+.   ......+++.++|.|     .+..+|+|...|.+.||.+.
T Consensus       642 VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  642 VKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             EEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence            999999877  3322   233456788888877     34488999999999999865

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.1e-29  Score=239.47  Aligned_cols=275  Identities=22%  Similarity=0.397  Sum_probs=234.1

Q ss_pred             CCCCeEEEEECCCCCE-EEEEeCCCeEEEEECCCc-eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCccee
Q 008467          274 KSKDVTTLDWNGEGTL-LATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK  351 (564)
Q Consensus       274 ~~~~V~~l~~s~~g~~-l~sg~~dg~i~vw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~  351 (564)
                      ....|++++|||...+ +|+++ .-.+.||+..+. ....+...+..|+++.|..||..|++|...|.|+|+|..+...+
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL  103 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL  103 (487)
T ss_pred             ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHH
Confidence            3567999999995533 33333 347888886554 33456778889999999999999999999999999998887778


Q ss_pred             EEEeecccCeEEEEc--CCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCC-CEEEEEeCCCcEEEEeC
Q 008467          352 QQFEFHSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNM  428 (564)
Q Consensus       352 ~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~-~~las~s~dg~i~iwd~  428 (564)
                      ..+..|..++..+.|  .++..|+++++|+.+.+|++.+...+..+.+|+..|.|.+|+|-. .+++|||.||+||+||+
T Consensus       104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt  183 (487)
T KOG0310|consen  104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT  183 (487)
T ss_pred             HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence            888899999877776  466788999999999999999888766899999999999999964 58999999999999999


Q ss_pred             CCC-eeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEEeCCCCCEEEEEEcCCCCE
Q 008467          429 KQD-KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEY  506 (564)
Q Consensus       429 ~~~-~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~~~~spdg~~  506 (564)
                      +.. ..+.++ .|..+|-.+.+-|.|.         ++++++. ..|+|||+-+| +.+..+..|...|+|+++..++..
T Consensus       184 R~~~~~v~el-nhg~pVe~vl~lpsgs---------~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~r  252 (487)
T KOG0310|consen  184 RSLTSRVVEL-NHGCPVESVLALPSGS---------LIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTR  252 (487)
T ss_pred             ccCCceeEEe-cCCCceeeEEEcCCCC---------EEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCce
Confidence            877 555555 5899999999999876         6777764 58999999865 455556669999999999999999


Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEE
Q 008467          507 LASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVL  560 (564)
Q Consensus       507 lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~  560 (564)
                      |.+||-|+.|++|++.+.+++..+.-.++|.+++.+|+++.+++|..||.+.+-
T Consensus       253 LlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~r  306 (487)
T KOG0310|consen  253 LLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIR  306 (487)
T ss_pred             EeecccccceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeeee
Confidence            999999999999999999999999999999999999999999999999987654

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=6.5e-29  Score=273.03  Aligned_cols=240  Identities=21%  Similarity=0.338  Sum_probs=199.9

Q ss_pred             ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCc---------eeEeecCCCCCEEEEEeCCC-CCEEEEeeCCCcEE
Q 008467          272 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD---------LKCTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAI  341 (564)
Q Consensus       272 ~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~---------~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~D~~v~  341 (564)
                      ..+...|++++|+|+|++|++|+.||.|+||+....         ....+ .+...|.+++|++. +.+|++++.|++|+
T Consensus       480 ~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~las~~~Dg~v~  558 (793)
T PLN00181        480 LNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKLSGICWNSYIKSQVASSNFEGVVQ  558 (793)
T ss_pred             cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence            346778999999999999999999999999996431         11122 23567899999874 68899999999999


Q ss_pred             EEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECC-CCCEEEEEeCC
Q 008467          342 VWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDD  420 (564)
Q Consensus       342 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~-~~~~las~s~d  420 (564)
                      +||+.+++                                         .+..+.+|.+.|.+++|+| ++.+|+||+.|
T Consensus       559 lWd~~~~~-----------------------------------------~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~D  597 (793)
T PLN00181        559 VWDVARSQ-----------------------------------------LVTEMKEHEKRVWSIDYSSADPTLLASGSDD  597 (793)
T ss_pred             EEECCCCe-----------------------------------------EEEEecCCCCCEEEEEEcCCCCCEEEEEcCC
Confidence            99987643                                         2345678999999999997 78999999999


Q ss_pred             CcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-EEEEEeCCCCCEEEEE
Q 008467          421 VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-LLYSLNGHREPVYSLA  499 (564)
Q Consensus       421 g~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~h~~~i~~~~  499 (564)
                      ++|++||++++..+..+..+ ..+.++.|.+...        .+|++|+.||+|++||+++++ .+..+.+|...|.++.
T Consensus       598 g~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g--------~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~  668 (793)
T PLN00181        598 GSVKLWSINQGVSIGTIKTK-ANICCVQFPSESG--------RSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVR  668 (793)
T ss_pred             CEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCC--------CEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEE
Confidence            99999999998888877654 5789999965321        278999999999999998765 4677889999999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCC------eEEEEEecCC-CEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          500 FSPTGEYLASGSLDKSMHIWSLKEG------KIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       500 ~spdg~~lasgs~dg~i~iw~~~~~------~~~~~~~~~~-~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      |. ++.+|++++.|++|+|||+..+      +.+.++.++. .+..++|+++|.+||+|+.|+.|.||+..
T Consensus       669 f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~  738 (793)
T PLN00181        669 FV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKA  738 (793)
T ss_pred             Ee-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence            97 7889999999999999999743      5667777654 47889999999999999999999999853

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=4.7e-29  Score=253.91  Aligned_cols=275  Identities=17%  Similarity=0.222  Sum_probs=205.5

Q ss_pred             ccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCC-CCCCCceEEEEEeeccccccCCCCeEEEEECC-CCCEEEEE
Q 008467          216 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGG-AQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGTLLATG  293 (564)
Q Consensus       216 ~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~l~sg  293 (564)
                      -..|.....++++..+++++.+..+..|+...+..... ...+...     .......+|...|++++|+| ++++|++|
T Consensus        20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~-----~~~~~l~GH~~~V~~v~fsP~d~~~LaSg   94 (493)
T PTZ00421         20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLA-----SNPPILLGQEGPIIDVAFNPFDPQKLFTA   94 (493)
T ss_pred             eeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCC-----CCCceEeCCCCCEEEEEEcCCCCCEEEEE
Confidence            34566677788888888999999999998654321100 0000000     00011235678899999999 88999999


Q ss_pred             eCCCeEEEEECCC--------ceeEeecCCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEE
Q 008467          294 SYDGQARIWSTNG--------DLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV  364 (564)
Q Consensus       294 ~~dg~i~vw~~~~--------~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~  364 (564)
                      +.||.|++|+...        .....+.+|...|.+++|+|++ ++|++|+.|++|+|||+.++..              
T Consensus        95 S~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~--------------  160 (493)
T PTZ00421         95 SEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA--------------  160 (493)
T ss_pred             eCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE--------------
Confidence            9999999999753        2345788999999999999986 6899999999999999976532              


Q ss_pred             EcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeeccccccc-
Q 008467          365 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE-  443 (564)
Q Consensus       365 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~-  443 (564)
                                                 +..+.+|...|.+++|+|+|.+|++|+.|++|+|||+++++.+..+..|.+. 
T Consensus       161 ---------------------------~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~  213 (493)
T PTZ00421        161 ---------------------------VEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAK  213 (493)
T ss_pred             ---------------------------EEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCc
Confidence                                       2345678889999999999999999999999999999999998888888764 


Q ss_pred             EEEEEEccCCCCCCCCCCcEEEEEE---eCCCeEEEEeCCCCeE-EEEEeCC-CCCEEEEEEcCCCCEEEEEe-CCCcEE
Q 008467          444 IYTIRWSPTGSGTNNPNQQLILASA---SFDSTVKLWDVELGKL-LYSLNGH-REPVYSLAFSPTGEYLASGS-LDKSMH  517 (564)
Q Consensus       444 i~~i~~~p~~~~~~~~~~~~~l~s~---s~dg~i~iwd~~~~~~-~~~~~~h-~~~i~~~~~spdg~~lasgs-~dg~i~  517 (564)
                      +..+.|.+.+.        .++.+|   +.|+.|++||+++... +.....+ ...+....|+|++++|++|+ .|+.|+
T Consensus       214 ~~~~~w~~~~~--------~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Ir  285 (493)
T PTZ00421        214 SQRCLWAKRKD--------LIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIR  285 (493)
T ss_pred             ceEEEEcCCCC--------eEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEE
Confidence            34677877643        244433   3589999999987543 3333323 34566778999999999887 599999


Q ss_pred             EEeCCCCeEEEEEec--CCCEEEEEEccC
Q 008467          518 IWSLKEGKIVKTYTG--NGGIFEVCWNKE  544 (564)
Q Consensus       518 iw~~~~~~~~~~~~~--~~~i~~~~w~~~  544 (564)
                      +|++.+++++..+..  ...+..++|.|.
T Consensus       286 iwdl~~~~~~~~~~~~s~~~~~g~~~~pk  314 (493)
T PTZ00421        286 CFELMNERLTFCSSYSSVEPHKGLCMMPK  314 (493)
T ss_pred             EEEeeCCceEEEeeccCCCCCcceEeccc
Confidence            999999987766533  234566777664

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3e-30  Score=249.22  Aligned_cols=245  Identities=22%  Similarity=0.379  Sum_probs=224.5

Q ss_pred             EeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCC-CceEEEEeCCCeEEEEEcCC
Q 008467          310 CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NVSFATSSTDNMIYVCKIGE  388 (564)
Q Consensus       310 ~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~  388 (564)
                      ..+..+...|.++.|+|...+++++-..|.|.|||-++...++.|+....|+....+.. ..-++++++|..|++++..+
T Consensus         7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt   86 (794)
T KOG0276|consen    7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT   86 (794)
T ss_pred             hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence            34566889999999999999999999999999999999999999998888887777654 45678899999999999999


Q ss_pred             CceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCC-CeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEE
Q 008467          389 NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ-DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAS  467 (564)
Q Consensus       389 ~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~-~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s  467 (564)
                      ...++.|..|...|.|++.+|.-.+++|+|+|.+|++||... ..+.++|.+|..-|++++|.|...        ..+||
T Consensus        87 ~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~--------ntFaS  158 (794)
T KOG0276|consen   87 GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDP--------NTFAS  158 (794)
T ss_pred             ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCc--------cceee
Confidence            999999999999999999999999999999999999999865 467789999999999999998754        36899


Q ss_pred             EeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEeCCCCeEEEEEecCC-CEEEEEEccC
Q 008467          468 ASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG--EYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKE  544 (564)
Q Consensus       468 ~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg--~~lasgs~dg~i~iw~~~~~~~~~~~~~~~-~i~~~~w~~~  544 (564)
                      +|.|++|+||.+.+..+.+++.+|...|+++.|-+-|  .||++|++|.+|+|||.++..+++++.++. .|..++|+|.
T Consensus       159 ~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~  238 (794)
T KOG0276|consen  159 ASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPE  238 (794)
T ss_pred             eeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCC
Confidence            9999999999999999999999999999999998754  799999999999999999999999999765 5899999999


Q ss_pred             CCEEEEEEcCCcEEEEEe
Q 008467          545 GDKIAACFANHTVCVLDF  562 (564)
Q Consensus       545 g~~la~~~~~~~v~v~~~  562 (564)
                      =..+++|+.||+|+||+-
T Consensus       239 lpiiisgsEDGTvriWhs  256 (794)
T KOG0276|consen  239 LPIIISGSEDGTVRIWNS  256 (794)
T ss_pred             CcEEEEecCCccEEEecC
Confidence            999999999999999974

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.9e-29  Score=247.20  Aligned_cols=272  Identities=25%  Similarity=0.458  Sum_probs=233.5

Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEECCCc-eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEee-
Q 008467          279 TTLDWNGEGTLLATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF-  356 (564)
Q Consensus       279 ~~l~~s~~g~~l~sg~~dg~i~vw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-  356 (564)
                      .-++|+. .+.|++|. ...|.+|+.... .......+...|+++.|+++|.+|+.|..+|.|.|||..+.+....+.. 
T Consensus       181 nlldWss-~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~  258 (484)
T KOG0305|consen  181 NLLDWSS-ANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS  258 (484)
T ss_pred             hHhhccc-CCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC
Confidence            3568984 45666665 358999997544 3333444489999999999999999999999999999998888888888 


Q ss_pred             cccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeE-ecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeee
Q 008467          357 HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKT-FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH  435 (564)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~-~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~  435 (564)
                      |...+-++.|. ...+.+++.++.|..+++.....+.. +.+|..+|..++|++|+.++|+|+.|+.+.|||.....+..
T Consensus       259 h~~rvg~laW~-~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~  337 (484)
T KOG0305|consen  259 HASRVGSLAWN-SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKF  337 (484)
T ss_pred             cCceeEEEecc-CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccE
Confidence            88899999998 66778899999999999987765544 88999999999999999999999999999999998888889


Q ss_pred             ecccccccEEEEEEccCCCCCCCCCCcEEEEEE--eCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEE--e
Q 008467          436 DLREHSKEIYTIRWSPTGSGTNNPNQQLILASA--SFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASG--S  511 (564)
Q Consensus       436 ~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~--s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasg--s  511 (564)
                      .+..|...|.+++|+|...+        +||+|  +.|++|++||+.+|..+..+.. ...|.+|.|++..+-|+++  -
T Consensus       338 ~~~~H~aAVKA~awcP~q~~--------lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~  408 (484)
T KOG0305|consen  338 TFTEHTAAVKALAWCPWQSG--------LLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGY  408 (484)
T ss_pred             EEeccceeeeEeeeCCCccC--------ceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCC
Confidence            99999999999999997653        78886  4799999999999999888764 4679999999998766653  3


Q ss_pred             CCCcEEEEeCCCCeEEEEEecCC-CEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467          512 LDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDF  562 (564)
Q Consensus       512 ~dg~i~iw~~~~~~~~~~~~~~~-~i~~~~w~~~g~~la~~~~~~~v~v~~~  562 (564)
                      .++.|.||+..+.+++..+.++. .|..++|+|||..+++|.+|.++++|++
T Consensus       409 s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~  460 (484)
T KOG0305|consen  409 SENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNL  460 (484)
T ss_pred             CCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccc
Confidence            56789999999988888887764 6999999999999999999999999986

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=6.1e-29  Score=253.11  Aligned_cols=244  Identities=20%  Similarity=0.348  Sum_probs=197.5

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEECCCcee--------------EeecCCCCCEEEEEeCC-CCCEEEEeeCCCcEE
Q 008467          277 DVTTLDWNGEGTLLATGSYDGQARIWSTNGDLK--------------CTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAI  341 (564)
Q Consensus       277 ~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~--------------~~~~~h~~~V~~l~~~~-~~~~l~s~s~D~~v~  341 (564)
                      .|.....++++..+++++.+..+..|+..|...              ..+.+|.++|++++|+| ++++|++|+.|++|+
T Consensus        22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk  101 (493)
T PTZ00421         22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM  101 (493)
T ss_pred             ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE
Confidence            344555666767777888888888887544321              13678999999999999 788999999999999


Q ss_pred             EEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCC-CEEEEEeCC
Q 008467          342 VWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDD  420 (564)
Q Consensus       342 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~-~~las~s~d  420 (564)
                      +||+.++.....                                  ...++..+.+|...|.+++|+|++ ++|++|+.|
T Consensus       102 IWdi~~~~~~~~----------------------------------~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D  147 (493)
T PTZ00421        102 GWGIPEEGLTQN----------------------------------ISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD  147 (493)
T ss_pred             EEecCCCccccc----------------------------------cCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC
Confidence            999876421100                                  123566788999999999999986 689999999


Q ss_pred             CcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCC-EEEEE
Q 008467          421 VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREP-VYSLA  499 (564)
Q Consensus       421 g~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~-i~~~~  499 (564)
                      ++|+|||+.++..+..+..|...|.+++|+|++.         +|++++.|++|+|||+++++.+.++.+|... +..+.
T Consensus       148 gtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~---------lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~  218 (493)
T PTZ00421        148 MVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGS---------LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCL  218 (493)
T ss_pred             CEEEEEECCCCeEEEEEcCCCCceEEEEEECCCC---------EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEE
Confidence            9999999999999889999999999999999875         7999999999999999999999999988765 45678


Q ss_pred             EcCCCCEEEEEe----CCCcEEEEeCCCCe-EEEEEe--cCCCEEEEEEccCCCEEEEEE-cCCcEEEEEee
Q 008467          500 FSPTGEYLASGS----LDKSMHIWSLKEGK-IVKTYT--GNGGIFEVCWNKEGDKIAACF-ANHTVCVLDFR  563 (564)
Q Consensus       500 ~spdg~~lasgs----~dg~i~iw~~~~~~-~~~~~~--~~~~i~~~~w~~~g~~la~~~-~~~~v~v~~~~  563 (564)
                      |+|++..|++++    .|+.|++||+++.. .+....  ....+....|+++++.|++|+ .|+.|++||++
T Consensus       219 w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~  290 (493)
T PTZ00421        219 WAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELM  290 (493)
T ss_pred             EcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEee
Confidence            999988887765    47899999998754 333332  234566778999999999886 59999999986

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=5.6e-30  Score=257.15  Aligned_cols=292  Identities=21%  Similarity=0.378  Sum_probs=207.2

Q ss_pred             CCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEE--ECCCCCEEE
Q 008467          214 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLD--WNGEGTLLA  291 (564)
Q Consensus       214 ~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~--~s~~g~~l~  291 (564)
                      +|.+.|.++.||+||+||||||.|+.||||.+..................  ..  .......+++.-.  -.......-
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~--~~--~~~s~~~p~~s~~~~~~~~~s~~~  340 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYF--EY--NANSQIEPSTSSEEKISSRTSSSR  340 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhh--hh--hhccccCccccccccccccccccc
Confidence            89999999999999999999999999999998653221000000000000  00  0000000111000  000011111


Q ss_pred             EEeCCCeEEE----EECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcC
Q 008467          292 TGSYDGQARI----WSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR  367 (564)
Q Consensus       292 sg~~dg~i~v----w~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  367 (564)
                      .+.....+.+    .-...+..+.+.+|.+.|..|.|+.+ ++|+++|+|+|||+|++...+++..|             
T Consensus       341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F-------------  406 (712)
T KOG0283|consen  341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF-------------  406 (712)
T ss_pred             cccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE-------------
Confidence            2222222221    22334667789999999999999976 58999999999999999876655443             


Q ss_pred             CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEE
Q 008467          368 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT  446 (564)
Q Consensus       368 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~-~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~  446 (564)
                                                   .|...|+||+|+| |.+++++||-||.+|||++...+.+.- ..-..-|++
T Consensus       407 -----------------------------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W-~Dl~~lITA  456 (712)
T KOG0283|consen  407 -----------------------------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDW-NDLRDLITA  456 (712)
T ss_pred             -----------------------------ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEee-hhhhhhhee
Confidence                                         3888999999999 678999999999999999987776543 334478999


Q ss_pred             EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEe--CC------CCCEEEEEEcCCC-CEEEEEeCCCcEE
Q 008467          447 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN--GH------REPVYSLAFSPTG-EYLASGSLDKSMH  517 (564)
Q Consensus       447 i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~h------~~~i~~~~~spdg-~~lasgs~dg~i~  517 (564)
                      ++|.|+|.         ..+.|+.+|.+++|+....+......  .|      ...|+.+.|.|.. ..+.+.+.|..|+
T Consensus       457 vcy~PdGk---------~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIR  527 (712)
T KOG0283|consen  457 VCYSPDGK---------GAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIR  527 (712)
T ss_pred             EEeccCCc---------eEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceE
Confidence            99999986         57789999999999998766654432  11      1279999999754 3466678899999


Q ss_pred             EEeCCCCeEEEEEecC---CCEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467          518 IWSLKEGKIVKTYTGN---GGIFEVCWNKEGDKIAACFANHTVCVLDF  562 (564)
Q Consensus       518 iw~~~~~~~~~~~~~~---~~i~~~~w~~~g~~la~~~~~~~v~v~~~  562 (564)
                      |||.++..++..|.+.   ..-...+|+.||++|+.++.|..|.||+.
T Consensus       528 I~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~  575 (712)
T KOG0283|consen  528 IYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKN  575 (712)
T ss_pred             EEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeC
Confidence            9999888888887753   23456789999999999999999999986

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=2e-27  Score=202.56  Aligned_cols=296  Identities=26%  Similarity=0.383  Sum_probs=234.6

Q ss_pred             CccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceE-EEEEeeccccccCCCCeEEEEECCCCCEEEEE
Q 008467          215 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNV-LVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG  293 (564)
Q Consensus       215 h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg  293 (564)
                      .+..|.+++|+|.|.+.|.|+...+.||-....-.........+... .++.+   +...|...|.|.+|||+|+++++|
T Consensus        31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~k---r~khhkgsiyc~~ws~~geliatg  107 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCK---RNKHHKGSIYCTAWSPCGELIATG  107 (350)
T ss_pred             chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEee---eccccCccEEEEEecCccCeEEec
Confidence            44679999999999999999999999998654321111111111111 11111   122346789999999999999999


Q ss_pred             eCCCeEEEEECCCc------eeEeecCCCCCEEEEEeCCC----CCEEEEee-CCCcEEEEECCCcceeEEEeecccCeE
Q 008467          294 SYDGQARIWSTNGD------LKCTLSKHKGPIFSLKWNKK----GDYLLTGS-CDKTAIVWDVKTEEWKQQFEFHSGPTL  362 (564)
Q Consensus       294 ~~dg~i~vw~~~~~------~~~~~~~h~~~V~~l~~~~~----~~~l~s~s-~D~~v~iwd~~~~~~~~~~~~~~~~~~  362 (564)
                      +.|.+|++.-.+..      ....+.-|.+.|..++|-.+    +..|++++ .|..|.+-|..+++-.+.+..|.+.++
T Consensus       108 sndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghil  187 (350)
T KOG0641|consen  108 SNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHIL  187 (350)
T ss_pred             CCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEE
Confidence            99999999865432      23467789999999999643    34555544 466777778889988888999999999


Q ss_pred             EEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecC--C-----CcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeee
Q 008467          363 DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG--H-----QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH  435 (564)
Q Consensus       363 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~--h-----~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~  435 (564)
                      .+---++..|++++.|.+|++||++-+..+.++..  |     .+.|.+++..|.|++|++|..|....+||++.+++++
T Consensus       188 alyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq  267 (350)
T KOG0641|consen  188 ALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQ  267 (350)
T ss_pred             EEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceee
Confidence            88766778899999999999999998887776642  2     2468999999999999999999999999999999999


Q ss_pred             ecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC----eEEEEEeCCCCCEEEEEEcCCCCEEEEEe
Q 008467          436 DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG----KLLYSLNGHREPVYSLAFSPTGEYLASGS  511 (564)
Q Consensus       436 ~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~h~~~i~~~~~spdg~~lasgs  511 (564)
                      .+..|...|.+++|+|..         .+|++||.|..|++-|+.-.    -.+.....|...+..+.|+|..--+++.+
T Consensus       268 ~f~phsadir~vrfsp~a---------~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisss  338 (350)
T KOG0641|consen  268 RFHPHSADIRCVRFSPGA---------HYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSS  338 (350)
T ss_pred             eeCCCccceeEEEeCCCc---------eEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeecc
Confidence            999999999999999965         48999999999999998721    12344567888889999999998899999


Q ss_pred             CCCcEEEEeCC
Q 008467          512 LDKSMHIWSLK  522 (564)
Q Consensus       512 ~dg~i~iw~~~  522 (564)
                      .|.++.+|-+.
T Consensus       339 adkt~tlwa~~  349 (350)
T KOG0641|consen  339 ADKTATLWALN  349 (350)
T ss_pred             CcceEEEeccC
Confidence            99999999764

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=8.2e-30  Score=220.33  Aligned_cols=282  Identities=25%  Similarity=0.408  Sum_probs=237.0

Q ss_pred             eEccCCccceEEEEECC---CCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC
Q 008467          210 TILEGHTSEVCACAWSP---AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE  286 (564)
Q Consensus       210 ~~l~~h~~~V~~~~~sp---~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~  286 (564)
                      .+..||+.+|-.++|||   +|-+|.+++.||.-.+=+=.+|..+                 +...+|...|.+...+.+
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwi-----------------gtfeghkgavw~~~l~~n   70 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWI-----------------GTFEGHKGAVWSATLNKN   70 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcE-----------------EeeeccCcceeeeecCch
Confidence            35689999999999997   6789999999998766544443321                 122345678999999999


Q ss_pred             CCEEEEEeCCCeEEEEEC-CCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEE
Q 008467          287 GTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD  365 (564)
Q Consensus       287 g~~l~sg~~dg~i~vw~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~  365 (564)
                      ....|+++.|-+.+|||. .|..+..+ .|+--|.+++|+.+.++|++|+.++.+||+|++..                 
T Consensus        71 a~~aasaaadftakvw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p-----------------  132 (334)
T KOG0278|consen   71 ATRAASAAADFTAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRP-----------------  132 (334)
T ss_pred             hhhhhhhcccchhhhhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCC-----------------
Confidence            999999999999999994 56665555 48889999999999999999999999999998653                 


Q ss_pred             cCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEE
Q 008467          366 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY  445 (564)
Q Consensus       366 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~  445 (564)
                                             ..|...+.+|.+.|..+-|....+.|+|.++|++||+||.+++..++++.. ..+|.
T Consensus       133 -----------------------~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~Vt  188 (334)
T KOG0278|consen  133 -----------------------KAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVT  188 (334)
T ss_pred             -----------------------CCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec-CCCCc
Confidence                                   235567889999999999999889999999999999999999999988764 45789


Q ss_pred             EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 008467          446 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK  525 (564)
Q Consensus       446 ~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~  525 (564)
                      ++..+++|.          +++-..-+.|++||..+-.++...+- ...|.+.+++|+..++++|+.|+.++.||..+|.
T Consensus       189 SlEvs~dG~----------ilTia~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tge  257 (334)
T KOG0278|consen  189 SLEVSQDGR----------ILTIAYGSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGE  257 (334)
T ss_pred             ceeeccCCC----------EEEEecCceeEEeccccccceeeccC-ccccccccccCCCceEEecCcceEEEEEeccCCc
Confidence            999999885          44556678999999998887776652 3468999999999999999999999999999998


Q ss_pred             EEEEE-ec-CCCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467          526 IVKTY-TG-NGGIFEVCWNKEGDKIAACFANHTVCVLD  561 (564)
Q Consensus       526 ~~~~~-~~-~~~i~~~~w~~~g~~la~~~~~~~v~v~~  561 (564)
                      -+..+ .+ .++|.++.|+|||...|+|+.||+|++|-
T Consensus       258 Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ  295 (334)
T KOG0278|consen  258 EIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ  295 (334)
T ss_pred             eeeecccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence            88776 43 56799999999999999999999999995

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=5.1e-29  Score=217.56  Aligned_cols=286  Identities=20%  Similarity=0.338  Sum_probs=226.4

Q ss_pred             eEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE
Q 008467          210 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL  289 (564)
Q Consensus       210 ~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~  289 (564)
                      ..|.||..+++.+.++.+|.+|+|++.|.++.+|--.+|..                 .+.+.+|...|.|++.+-+.+.
T Consensus         4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer-----------------lGty~GHtGavW~~Did~~s~~   66 (327)
T KOG0643|consen    4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER-----------------LGTYDGHTGAVWCCDIDWDSKH   66 (327)
T ss_pred             cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCce-----------------eeeecCCCceEEEEEecCCcce
Confidence            46789999999999999999999999999999997655542                 1334567889999999999999


Q ss_pred             EEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCC-----CcEEEEECC-------CcceeEEEee
Q 008467          290 LATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD-----KTAIVWDVK-------TEEWKQQFEF  356 (564)
Q Consensus       290 l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D-----~~v~iwd~~-------~~~~~~~~~~  356 (564)
                      +++|+.|.++++||+. |+.+..+ ....+|..+.|+++|++++.+..+     +.|.++|++       ..+....+..
T Consensus        67 liTGSAD~t~kLWDv~tGk~la~~-k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t  145 (327)
T KOG0643|consen   67 LITGSADQTAKLWDVETGKQLATW-KTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT  145 (327)
T ss_pred             eeeccccceeEEEEcCCCcEEEEe-ecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC
Confidence            9999999999999976 5555444 467899999999999988776543     578999987       3344455556


Q ss_pred             cccCeEEEEcCC-CceEEEEeCCCeEEEEEcCCCc-eeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeee
Q 008467          357 HSGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENR-PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV  434 (564)
Q Consensus       357 ~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~-~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~  434 (564)
                      +...+..+-|.. +..++++..||.|..|+..++. .+..-.-|...|+.++++||..+++|+|.|.+.++||+.+-..+
T Consensus       146 ~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~  225 (327)
T KOG0643|consen  146 PDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVL  225 (327)
T ss_pred             CccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeE
Confidence            666777778865 4567889999999999999874 45555779999999999999999999999999999999998888


Q ss_pred             eecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCC-eEEEEeCCCC------------eEEEEEeCCCCCEEEEEEc
Q 008467          435 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS-TVKLWDVELG------------KLLYSLNGHREPVYSLAFS  501 (564)
Q Consensus       435 ~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg-~i~iwd~~~~------------~~~~~~~~h~~~i~~~~~s  501 (564)
                      .++.. ..++.+.+++|...        .+++.|+.+- .|.-=+.+.|            +.+..+++|-+||++++|+
T Consensus       226 Kty~t-e~PvN~aaisP~~d--------~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfh  296 (327)
T KOG0643|consen  226 KTYTT-ERPVNTAAISPLLD--------HVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFH  296 (327)
T ss_pred             EEeee-cccccceecccccc--------eEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEEC
Confidence            77653 46788888888643        3444444331 1211122222            3455678999999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCC
Q 008467          502 PTGEYLASGSLDKSMHIWSLK  522 (564)
Q Consensus       502 pdg~~lasgs~dg~i~iw~~~  522 (564)
                      |+|+..++|+.||.|++....
T Consensus       297 PdGksYsSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  297 PDGKSYSSGGEDGYVRLHHFD  317 (327)
T ss_pred             CCCcccccCCCCceEEEEEec
Confidence            999999999999999987654

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=2.7e-27  Score=212.47  Aligned_cols=277  Identities=21%  Similarity=0.331  Sum_probs=219.5

Q ss_pred             cCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEE
Q 008467          213 EGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLAT  292 (564)
Q Consensus       213 ~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~s  292 (564)
                      ..-.+.|+++.|+++|.+|++++.|.+++|||..+++....             .    ..+...|..++|-...+.++.
T Consensus        11 ~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~t-------------i----~skkyG~~~~~Fth~~~~~i~   73 (311)
T KOG1446|consen   11 RETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKT-------------I----NSKKYGVDLACFTHHSNTVIH   73 (311)
T ss_pred             ccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeE-------------e----ecccccccEEEEecCCceEEE
Confidence            33457899999999999999999999999999987753211             1    112345777788777666666


Q ss_pred             EeC--CCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCC
Q 008467          293 GSY--DGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN  369 (564)
Q Consensus       293 g~~--dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  369 (564)
                      ++.  |.+||.-++. .+.+..|.+|...|.+|+.+|-+..++++|.|++|++||++..++...+..             
T Consensus        74 sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~-------------  140 (311)
T KOG1446|consen   74 SSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL-------------  140 (311)
T ss_pred             ccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec-------------
Confidence            666  8899999875 567778999999999999999999999999999999999987654432211             


Q ss_pred             ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCC--eeeeecc---cccccE
Q 008467          370 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD--KYVHDLR---EHSKEI  444 (564)
Q Consensus       370 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~--~~~~~~~---~~~~~i  444 (564)
                                                    ..-..++|+|.|-++|++.....|++||++.-  .+..++.   ....+.
T Consensus       141 ------------------------------~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew  190 (311)
T KOG1446|consen  141 ------------------------------SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEW  190 (311)
T ss_pred             ------------------------------CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccce
Confidence                                          11224789999999999998889999999753  3334443   335678


Q ss_pred             EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCE---EEEEEcCCCCEEEEEeCCCcEEEEeC
Q 008467          445 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPV---YSLAFSPTGEYLASGSLDKSMHIWSL  521 (564)
Q Consensus       445 ~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i---~~~~~spdg~~lasgs~dg~i~iw~~  521 (564)
                      ..+.|+|+|.         +|+.+...+.+++.|.-+|..+.++..+...-   ...+|+|||+++.+|+.||+|++|++
T Consensus       191 ~~l~FS~dGK---------~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~  261 (311)
T KOG1446|consen  191 TDLEFSPDGK---------SILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNL  261 (311)
T ss_pred             eeeEEcCCCC---------EEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEc
Confidence            8999999996         45566778999999999999988887765432   57889999999999999999999999


Q ss_pred             CCCeEEEEEecC--CCEEEEEEccCCCEEEEEEcCCcEEEE
Q 008467          522 KEGKIVKTYTGN--GGIFEVCWNKEGDKIAACFANHTVCVL  560 (564)
Q Consensus       522 ~~~~~~~~~~~~--~~i~~~~w~~~g~~la~~~~~~~v~v~  560 (564)
                      ++|+.+..+.+.  +.+..+.|+|.--.+|+++.  .+.+|
T Consensus       262 ~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s--~l~fw  300 (311)
T KOG1446|consen  262 ETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS--NLVFW  300 (311)
T ss_pred             CCCcEeeEecCCCCCCccccccCCceeeeeecCc--eEEEE
Confidence            999999999873  45778889999888887754  45555

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=2.9e-27  Score=201.54  Aligned_cols=278  Identities=24%  Similarity=0.461  Sum_probs=228.1

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEECCC---------------c-eeEeecCCCCCEEEEEeCCCCCEEEEeeCCC
Q 008467          275 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNG---------------D-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK  338 (564)
Q Consensus       275 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~---------------~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~  338 (564)
                      +..|.+++|+|.|.+.++|+...+.||.....               . +...-..|++.|+|.+|+|.|..|++|+.|+
T Consensus        32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk  111 (350)
T KOG0641|consen   32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDK  111 (350)
T ss_pred             hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCc
Confidence            46799999999999999999999999874211               1 1123456899999999999999999999999


Q ss_pred             cEEEEECCCccee-----EEEeecccCeEEEEcCCC-----ceEEEE-eCCCeEEEEEcCCCceeeEecCCCcceEEEEE
Q 008467          339 TAIVWDVKTEEWK-----QQFEFHSGPTLDVDWRNN-----VSFATS-STDNMIYVCKIGENRPIKTFAGHQGEVNCVKW  407 (564)
Q Consensus       339 ~v~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~-----~~~~~~-~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~  407 (564)
                      +|++.-.+...+.     -.|..|.+.+.++.|.++     ..++++ ..|-.|++-|.+.+.+...+.||++.|.++ +
T Consensus       112 ~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-y  190 (350)
T KOG0641|consen  112 TIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-Y  190 (350)
T ss_pred             eEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-E
Confidence            9998865543322     257789999999988644     234443 467789999999999999999999999877 3


Q ss_pred             CCCCCEEEEEeCCCcEEEEeCCCCeeeeeccc--c-----cccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC
Q 008467          408 DPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE--H-----SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE  480 (564)
Q Consensus       408 ~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~--~-----~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~  480 (564)
                      +-++-++++||.|.+||+||++-..++.++..  |     ...|.+++..|.|.         +|++|-.|....+||++
T Consensus       191 swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr---------ll~sg~~dssc~lydir  261 (350)
T KOG0641|consen  191 SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR---------LLASGHADSSCMLYDIR  261 (350)
T ss_pred             EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc---------eeeeccCCCceEEEEee
Confidence            45688999999999999999998888776532  2     25688899999886         89999999999999999


Q ss_pred             CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC---e--EEEEEecCCCEEEEEEccCCCEEEEEEcCC
Q 008467          481 LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG---K--IVKTYTGNGGIFEVCWNKEGDKIAACFANH  555 (564)
Q Consensus       481 ~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~---~--~~~~~~~~~~i~~~~w~~~g~~la~~~~~~  555 (564)
                      -++.+..+-.|...|.++.|||...||.+|+.|..|++-|++.-   +  .+..-+....+..+.|+|..-.+...+.|.
T Consensus       262 g~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadk  341 (350)
T KOG0641|consen  262 GGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADK  341 (350)
T ss_pred             CCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcc
Confidence            99999999999999999999999999999999999999998632   1  122223445677889999998888888999


Q ss_pred             cEEEEEe
Q 008467          556 TVCVLDF  562 (564)
Q Consensus       556 ~v~v~~~  562 (564)
                      ++.+|-+
T Consensus       342 t~tlwa~  348 (350)
T KOG0641|consen  342 TATLWAL  348 (350)
T ss_pred             eEEEecc
Confidence            9999854

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=1.2e-28  Score=219.42  Aligned_cols=305  Identities=23%  Similarity=0.373  Sum_probs=232.6

Q ss_pred             CceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCC---------CCCCCCCCceEEEEEeeccccccCCCC
Q 008467          207 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTS---------NGGAQNGPLNVLVLKHVKGRTNEKSKD  277 (564)
Q Consensus       207 ~~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (564)
                      -....+..|+.++.+.+|||||.++||||.|..|+|.|++....         ....+.+|    +++.    .-.|..+
T Consensus       103 yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hP----vIRT----lYDH~de  174 (430)
T KOG0640|consen  103 YETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHP----VIRT----LYDHVDE  174 (430)
T ss_pred             cceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCc----eEee----hhhccCc
Confidence            34567889999999999999999999999999999999873210         01111111    1222    2245678


Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEECCCce-eEe--ecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEE
Q 008467          278 VTTLDWNGEGTLLATGSYDGQARIWSTNGDL-KCT--LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF  354 (564)
Q Consensus       278 V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~-~~~--~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  354 (564)
                      |+++.|+|....|++|+.|++|+++|..... +..  .-.-..+|.++.|+|.|.+|+.|..-.++++||+++-++.-.-
T Consensus       175 vn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsa  254 (430)
T KOG0640|consen  175 VNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSA  254 (430)
T ss_pred             ccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeec
Confidence            9999999999999999999999999976421 111  1224568999999999999999999999999999987654332


Q ss_pred             ---eecccCeEEEEcCCC-ceEEEEeCCCeEEEEEcCCCceeeEec-CCCc-ceEEEEECCCCCEEEEEeCCCcEEEEeC
Q 008467          355 ---EFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFA-GHQG-EVNCVKWDPTGSLLASCSDDVTAKIWNM  428 (564)
Q Consensus       355 ---~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~-~h~~-~i~~v~~~~~~~~las~s~dg~i~iwd~  428 (564)
                         ..|.+.+.++.+... ..+++++.||.|++||--.++++.++. .|.+ .|.++.|..+|+++.+.+.|..+++|.+
T Consensus       255 nPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi  334 (430)
T KOG0640|consen  255 NPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEI  334 (430)
T ss_pred             CcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeee
Confidence               356778888988654 567999999999999988888888875 4654 6999999999999999999999999999


Q ss_pred             CCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEE-eCCCCCEEEEEEcCCCCEE
Q 008467          429 KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-NGHREPVYSLAFSPTGEYL  507 (564)
Q Consensus       429 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~h~~~i~~~~~spdg~~l  507 (564)
                      .+++++....+....-. ..+  .....++....++|.---..+.+.-||.+++..+..+ .+|.+++..+.-||.+..+
T Consensus       335 ~t~R~l~~YtGAg~tgr-q~~--rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~F  411 (430)
T KOG0640|consen  335 STGRMLKEYTGAGTTGR-QKH--RTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAF  411 (430)
T ss_pred             cCCceEEEEecCCcccc-hhh--hhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCce
Confidence            99999887765421100 000  0112223334445544445578999999987654433 4799999999999999999


Q ss_pred             EEEeCCCcEEEEeCC
Q 008467          508 ASGSLDKSMHIWSLK  522 (564)
Q Consensus       508 asgs~dg~i~iw~~~  522 (564)
                      .+||.|-++++|-.+
T Consensus       412 mTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  412 MTCSDDFRARFWYRR  426 (430)
T ss_pred             eeecccceeeeeeec
Confidence            999999999999654

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=5.6e-28  Score=214.71  Aligned_cols=268  Identities=21%  Similarity=0.353  Sum_probs=207.1

Q ss_pred             CccceEEEEECCC-CCEEEEEECCCcEEEEeCCCC-CCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEE
Q 008467          215 HTSEVCACAWSPA-GSLLASGSGDSTARIWTIADG-TSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLAT  292 (564)
Q Consensus       215 h~~~V~~~~~sp~-~~~lasgs~D~~i~iW~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~s  292 (564)
                      -.+.|.+++|||. ..+|+.||.|++||+|+++.. ...++                ....+.++|.+++|+.||..+++
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~k----------------a~~~~~~PvL~v~WsddgskVf~   89 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPK----------------AQQSHDGPVLDVCWSDDGSKVFS   89 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcccch----------------hhhccCCCeEEEEEccCCceEEe
Confidence            3477999999994 667779999999999999763 22111                11245789999999999999999


Q ss_pred             EeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCC--EEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCc
Q 008467          293 GSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGD--YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV  370 (564)
Q Consensus       293 g~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (564)
                      |+.|+.+++||+.......+..|.++|.+++|-+...  .|+|||+|++++.||.+....+.++...             
T Consensus        90 g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-------------  156 (347)
T KOG0647|consen   90 GGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP-------------  156 (347)
T ss_pred             eccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc-------------
Confidence            9999999999998888888999999999999988766  7999999999999999865544333221             


Q ss_pred             eEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccc----cccEEE
Q 008467          371 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH----SKEIYT  446 (564)
Q Consensus       371 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~----~~~i~~  446 (564)
                                                   ..+.++..  -..+++.+..+..|.+|++..+..  .++.+    .-.+.+
T Consensus       157 -----------------------------eRvYa~Dv--~~pm~vVata~r~i~vynL~n~~t--e~k~~~SpLk~Q~R~  203 (347)
T KOG0647|consen  157 -----------------------------ERVYAADV--LYPMAVVATAERHIAVYNLENPPT--EFKRIESPLKWQTRC  203 (347)
T ss_pred             -----------------------------ceeeehhc--cCceeEEEecCCcEEEEEcCCCcc--hhhhhcCcccceeeE
Confidence                                         11222221  235677788889999999865432  22222    234677


Q ss_pred             EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC--eEEEEEeCCCC---------CEEEEEEcCCCCEEEEEeCCCc
Q 008467          447 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG--KLLYSLNGHRE---------PVYSLAFSPTGEYLASGSLDKS  515 (564)
Q Consensus       447 i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~h~~---------~i~~~~~spdg~~lasgs~dg~  515 (564)
                      |+..++..         ..+.|+..|.+-|..+..+  +.-++++.|+.         +|++|+|+|.-..|+|+|.||+
T Consensus       204 va~f~d~~---------~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGt  274 (347)
T KOG0647|consen  204 VACFQDKD---------GFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGT  274 (347)
T ss_pred             EEEEecCC---------ceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCce
Confidence            77766654         2477999999999998876  55567777763         4788999999999999999999


Q ss_pred             EEEEeCCCCeEEEEEec-CCCEEEEEEccCCCEEEEEEc
Q 008467          516 MHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFA  553 (564)
Q Consensus       516 i~iw~~~~~~~~~~~~~-~~~i~~~~w~~~g~~la~~~~  553 (564)
                      +.+||-.....+++++. ..+|...+|+.+|+++|.+.+
T Consensus       275 f~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~g  313 (347)
T KOG0647|consen  275 FSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALG  313 (347)
T ss_pred             EEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEee
Confidence            99999987777777654 567999999999999997743

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=9.2e-30  Score=231.13  Aligned_cols=276  Identities=22%  Similarity=0.362  Sum_probs=224.1

Q ss_pred             cccCCCCeEEEEECCCC-CEEEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCc
Q 008467          271 TNEKSKDVTTLDWNGEG-TLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE  348 (564)
Q Consensus       271 ~~~~~~~V~~l~~s~~g-~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~  348 (564)
                      ..+|...|.|++=+|.- ..+++|+.||.|+|||+.. .+..++..|.+.|.+|++..  ..+++++.|++|+.|-+...
T Consensus        62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~  139 (433)
T KOG0268|consen   62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP  139 (433)
T ss_pred             ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCC
Confidence            34566789999999976 7899999999999999865 45678999999999999987  67999999999999986542


Q ss_pred             ceeEEEeecccCeEEEEcC-CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCC-EEEEEeCCCcEEEE
Q 008467          349 EWKQQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIW  426 (564)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~-~las~s~dg~i~iw  426 (564)
                       ...++.+ ...+++++-. .+..|++|+.  .|.+||..-..|+..+.-....|.++.|+|... +|++|..|+.|.||
T Consensus       140 -p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLy  215 (433)
T KOG0268|consen  140 -PLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLY  215 (433)
T ss_pred             -cceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEE
Confidence             3333322 2233444432 3456777764  477899998999999988888999999999764 57888899999999


Q ss_pred             eCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEEeCCCCCEEEEEEcCCCC
Q 008467          427 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGE  505 (564)
Q Consensus       427 d~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~~~~spdg~  505 (564)
                      |+++..+++.+..- -.-..|+|+|.+         ..+++|+.|..++.+|++.- ..+....+|...|.++.|||.|+
T Consensus       216 D~R~~~Pl~KVi~~-mRTN~IswnPea---------fnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~  285 (433)
T KOG0268|consen  216 DLRQASPLKKVILT-MRTNTICWNPEA---------FNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQ  285 (433)
T ss_pred             ecccCCccceeeee-ccccceecCccc---------cceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcc
Confidence            99999887655422 233679999944         25889999999999999864 45677889999999999999999


Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEEec--CCCEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467          506 YLASGSLDKSMHIWSLKEGKIVKTYTG--NGGIFEVCWNKEGDKIAACFANHTVCVLDF  562 (564)
Q Consensus       506 ~lasgs~dg~i~iw~~~~~~~~~~~~~--~~~i~~~~w~~~g~~la~~~~~~~v~v~~~  562 (564)
                      -+++||.|.+|+||.++.+.--..|-.  ...|+++.||.|.+++.+|+.++.|++|-.
T Consensus       286 EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka  344 (433)
T KOG0268|consen  286 EFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA  344 (433)
T ss_pred             hhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence            999999999999999998875555432  346899999999999999999999999964

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.97  E-value=9.7e-27  Score=232.32  Aligned_cols=328  Identities=20%  Similarity=0.303  Sum_probs=250.0

Q ss_pred             CceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC
Q 008467          207 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE  286 (564)
Q Consensus       207 ~~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~  286 (564)
                      ..+.++.++.+.|++|.=+|--..+|.|-.+|+|.|+++..++..          ..+++-       .+.|++++|..|
T Consensus       193 K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil----------~sFk~d-------~g~VtslSFrtD  255 (910)
T KOG1539|consen  193 KVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKIL----------MSFKQD-------WGRVTSLSFRTD  255 (910)
T ss_pred             cEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEE----------EEEEcc-------ccceeEEEeccC
Confidence            345678899999999999999999999999999999999765421          122221       267999999999


Q ss_pred             CC-EEEEEeCCCeEEEEECCCceeE--eecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcc----eeEEEeeccc
Q 008467          287 GT-LLATGSYDGQARIWSTNGDLKC--TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE----WKQQFEFHSG  359 (564)
Q Consensus       287 g~-~l~sg~~dg~i~vw~~~~~~~~--~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~----~~~~~~~~~~  359 (564)
                      |+ .+++|+..|.+.+||.+++.+.  ....|.+.|..+.|.|....+++++.|+++++|=..++.    ..+.-..|..
T Consensus       256 G~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~  335 (910)
T KOG1539|consen  256 GNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSA  335 (910)
T ss_pred             CCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCC
Confidence            97 5667777899999999876443  345799999999999999999999999999998444322    1112122333


Q ss_pred             CeEEEEcCC-------------------------------------------------------------------CceE
Q 008467          360 PTLDVDWRN-------------------------------------------------------------------NVSF  372 (564)
Q Consensus       360 ~~~~~~~~~-------------------------------------------------------------------~~~~  372 (564)
                      |..++.+..                                                                   +..+
T Consensus       336 Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~  415 (910)
T KOG1539|consen  336 PPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVI  415 (910)
T ss_pred             CchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhccee
Confidence            333332211                                                                   1122


Q ss_pred             EEEeCCCeEEEEEcCCCce-eeEe-----cCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeec---cccccc
Q 008467          373 ATSSTDNMIYVCKIGENRP-IKTF-----AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL---REHSKE  443 (564)
Q Consensus       373 ~~~~~d~~i~~~~~~~~~~-~~~~-----~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~---~~~~~~  443 (564)
                      +..-++...+.|+.++... ..++     ......+++++.++-|++.+.|+..|+|-+|++.++.....+   ..|.++
T Consensus       416 ~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~  495 (910)
T KOG1539|consen  416 TAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGE  495 (910)
T ss_pred             EEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCc
Confidence            3333445566666655432 1111     112356889999999999999999999999999999888888   589999


Q ss_pred             EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE-------------------------------------
Q 008467          444 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY-------------------------------------  486 (564)
Q Consensus       444 i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-------------------------------------  486 (564)
                      |+.++....+.         .+++++.+|.+++||......+.                                     
T Consensus       496 V~gla~D~~n~---------~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~  566 (910)
T KOG1539|consen  496 VTGLAVDGTNR---------LLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTR  566 (910)
T ss_pred             eeEEEecCCCc---------eEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhh
Confidence            99998765443         68889999999999876543221                                     


Q ss_pred             ----EEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcC-CcEEEE
Q 008467          487 ----SLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN-HTVCVL  560 (564)
Q Consensus       487 ----~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~-~~v~v~  560 (564)
                          .+.+|...|++++|||||+||++++.|++|++||+.++.++..+.-...+..++++|.|++||+...| ..|++|
T Consensus       567 kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylW  645 (910)
T KOG1539|consen  567 KVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLW  645 (910)
T ss_pred             hhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEE
Confidence                23379999999999999999999999999999999999999998888889999999999999999887 456776

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=1.3e-29  Score=219.03  Aligned_cols=247  Identities=25%  Similarity=0.420  Sum_probs=207.9

Q ss_pred             eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467          209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  288 (564)
Q Consensus       209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  288 (564)
                      +-++.||++.|..+..+.+-...|+++.|=+.+|||--+|....                  .-.|..-|.+++|+.|.+
T Consensus        52 igtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelh------------------sf~hkhivk~~af~~ds~  113 (334)
T KOG0278|consen   52 IGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELH------------------SFEHKHIVKAVAFSQDSN  113 (334)
T ss_pred             EEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhh------------------hhhhhheeeeEEecccch
Confidence            45788999999999999999999999999999999977664321                  112334589999999999


Q ss_pred             EEEEEeCCCeEEEEECCC--ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEc
Q 008467          289 LLATGSYDGQARIWSTNG--DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW  366 (564)
Q Consensus       289 ~l~sg~~dg~i~vw~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  366 (564)
                      +|++|+.+..+||++.+.  -....+.+|++.|..+-|....+.|++.+.|++||+||.+++..++.+.+          
T Consensus       114 ~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~----------  183 (334)
T KOG0278|consen  114 YLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF----------  183 (334)
T ss_pred             hhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec----------
Confidence            999999999999999864  34567899999999999999999999999999999999999987765543          


Q ss_pred             CCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEE
Q 008467          367 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT  446 (564)
Q Consensus       367 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~  446 (564)
                                                      ...|+++.++++|.+| +-..-+.|++||.++-..+..+... ..|.+
T Consensus       184 --------------------------------~s~VtSlEvs~dG~il-Tia~gssV~Fwdaksf~~lKs~k~P-~nV~S  229 (334)
T KOG0278|consen  184 --------------------------------NSPVTSLEVSQDGRIL-TIAYGSSVKFWDAKSFGLLKSYKMP-CNVES  229 (334)
T ss_pred             --------------------------------CCCCcceeeccCCCEE-EEecCceeEEeccccccceeeccCc-ccccc
Confidence                                            3467889999999986 4456678999999998888776543 34666


Q ss_pred             EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEE-eCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 008467          447 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK  525 (564)
Q Consensus       447 i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~  525 (564)
                      ...+|..         .+++.|+.|..++.||..+|..+..+ ++|.+||.|+.|||||...|+||.||+|++|.+..++
T Consensus       230 ASL~P~k---------~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  230 ASLHPKK---------EFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK  300 (334)
T ss_pred             ccccCCC---------ceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence            6666653         26888999999999999999998885 8999999999999999999999999999999987665


Q ss_pred             E
Q 008467          526 I  526 (564)
Q Consensus       526 ~  526 (564)
                      .
T Consensus       301 ~  301 (334)
T KOG0278|consen  301 T  301 (334)
T ss_pred             c
Confidence            3

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=9.3e-28  Score=235.40  Aligned_cols=276  Identities=26%  Similarity=0.489  Sum_probs=229.5

Q ss_pred             EEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCeE
Q 008467          220 CACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQA  299 (564)
Q Consensus       220 ~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i  299 (564)
                      +-+.|+ ..+.||.|. ...+++|+-.++..           ..+...      ....|+++.|+++|.+|++|..+|.|
T Consensus       181 nlldWs-s~n~laVal-g~~vylW~~~s~~v-----------~~l~~~------~~~~vtSv~ws~~G~~LavG~~~g~v  241 (484)
T KOG0305|consen  181 NLLDWS-SANVLAVAL-GQSVYLWSASSGSV-----------TELCSF------GEELVTSVKWSPDGSHLAVGTSDGTV  241 (484)
T ss_pred             hHhhcc-cCCeEEEEe-cceEEEEecCCCce-----------EEeEec------CCCceEEEEECCCCCEEEEeecCCeE
Confidence            346788 555666654 56799999766531           111111      14679999999999999999999999


Q ss_pred             EEEECCC-ceeEeecC-CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEE-EeecccCeEEEEcCC-CceEEEE
Q 008467          300 RIWSTNG-DLKCTLSK-HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ-FEFHSGPTLDVDWRN-NVSFATS  375 (564)
Q Consensus       300 ~vw~~~~-~~~~~~~~-h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~  375 (564)
                      .|||... .....+.+ |..-|-+++|+  +..+.+|+.|+.|..+|++..+.... +..|...+..+.|.. ...++++
T Consensus       242 ~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASG  319 (484)
T KOG0305|consen  242 QIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASG  319 (484)
T ss_pred             EEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccC
Confidence            9999653 34455666 99999999999  66899999999999999987765444 778889999999965 5678999


Q ss_pred             eCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC-CCEEEEEe--CCCcEEEEeCCCCeeeeecccccccEEEEEEccC
Q 008467          376 STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCS--DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT  452 (564)
Q Consensus       376 ~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~-~~~las~s--~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~  452 (564)
                      +.|+.+++|+.....|...+..|.+.|.+++|+|- ..+||+|+  .|+.|++||..++..+..+. -...|.++.|++.
T Consensus       320 gnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~  398 (484)
T KOG0305|consen  320 GNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKK  398 (484)
T ss_pred             CCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCC
Confidence            99999999999888999999999999999999994 57888865  59999999999999887765 3567999999997


Q ss_pred             CCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 008467          453 GSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG  524 (564)
Q Consensus       453 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~  524 (564)
                      ..       +++...|..++.|.||+..+.+.+..+.+|...|..+++||||..+++|+.|.++++|++-+.
T Consensus       399 ~k-------Ei~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  399 YK-------ELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             CC-------EEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            64       334445667889999999999999999999999999999999999999999999999998653

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=1.2e-27  Score=222.11  Aligned_cols=281  Identities=22%  Similarity=0.326  Sum_probs=230.3

Q ss_pred             cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC
Q 008467          217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD  296 (564)
Q Consensus       217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d  296 (564)
                      ..+.++...|....++||+.|..+.++|....+..             ..    ..+|.+.|+.+.++++...+++++.|
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l-------------~~----~~Gh~kki~~v~~~~~~~~v~~aSad  282 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQIL-------------AT----LKGHTKKITSVKFHKDLDTVITASAD  282 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhh-------------hh----ccCcceEEEEEEeccchhheeecCCc
Confidence            56777777887789999999999999997654321             11    23456789999999999999999999


Q ss_pred             CeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEE
Q 008467          297 GQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATS  375 (564)
Q Consensus       297 g~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (564)
                      -.|+||... .........|..+|+.+..+|.|.||++++.|+++.+.|++++........                   
T Consensus       283 ~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~-------------------  343 (506)
T KOG0289|consen  283 EIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSD-------------------  343 (506)
T ss_pred             ceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEee-------------------
Confidence            999999865 345556788999999999999999999999999999999988764432111                   


Q ss_pred             eCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCC
Q 008467          376 STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSG  455 (564)
Q Consensus       376 ~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~  455 (564)
                                          .+..-.+++++|+|||-+|++|+.||.++|||++++..+..|.+|.++|.+|+|+.+|  
T Consensus       344 --------------------~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENG--  401 (506)
T KOG0289|consen  344 --------------------ETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENG--  401 (506)
T ss_pred             --------------------ccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCc--
Confidence                                0112257899999999999999999999999999999999999999999999999887  


Q ss_pred             CCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC--CCeEEEEEec
Q 008467          456 TNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH-REPVYSLAFSPTGEYLASGSLDKSMHIWSLK--EGKIVKTYTG  532 (564)
Q Consensus       456 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h-~~~i~~~~~spdg~~lasgs~dg~i~iw~~~--~~~~~~~~~~  532 (564)
                             ++|++++.|+.|++||++..+...++... ..+|.++.|.+.|++|+.+|.|=+|++++-.  .+..+..+..
T Consensus       402 -------Y~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~  474 (506)
T KOG0289|consen  402 -------YWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELAD  474 (506)
T ss_pred             -------eEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhh
Confidence                   48999999999999999988776666432 2479999999999999999888666666633  4455655555


Q ss_pred             CC-CEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467          533 NG-GIFEVCWNKEGDKIAACFANHTVCVLDF  562 (564)
Q Consensus       533 ~~-~i~~~~w~~~g~~la~~~~~~~v~v~~~  562 (564)
                      +. ..+.+.|....++++.|+.|..+.|+-+
T Consensus       475 ~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  475 HSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             cccccceeeecccceEEeeccchhheEEeec
Confidence            44 4678889999999999999998888754

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.96  E-value=6.8e-28  Score=236.04  Aligned_cols=278  Identities=22%  Similarity=0.383  Sum_probs=226.1

Q ss_pred             eEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEE-EEECC-CC
Q 008467          210 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTT-LDWNG-EG  287 (564)
Q Consensus       210 ~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~-l~~s~-~g  287 (564)
                      ..+.||...|..|++.+. ..++++|.||++++|+-......+.        ..+.       .+..-|.+ +++-+ ++
T Consensus         8 ~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~--------~~~~-------~~~g~i~~~i~y~e~~~   71 (745)
T KOG0301|consen    8 HELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLET--------HAFE-------GPKGFIANSICYAESDK   71 (745)
T ss_pred             EEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccc--------eecc-------cCcceeeccceeccccC
Confidence            578999999999987755 4788999999999998543321110        0000       11122333 55553 55


Q ss_pred             CEEEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEc
Q 008467          288 TLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW  366 (564)
Q Consensus       288 ~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  366 (564)
                      -.+++|+.|+.+.+|...+ ....++.+|...|.++.-..++. ++|||+|.++++|-  .+++...+..|..++..+..
T Consensus        72 ~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~--~~~l~~~l~gH~asVWAv~~  148 (745)
T KOG0301|consen   72 GRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWR--IGELVYSLQGHTASVWAVAS  148 (745)
T ss_pred             cceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEec--chhhhcccCCcchheeeeee
Confidence            6799999999999999764 56778999999999999877777 99999999999994  45666678999999999888


Q ss_pred             CCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEE
Q 008467          367 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT  446 (564)
Q Consensus       367 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~  446 (564)
                      .+...|++++.|.+|++|.-  ++.+++|.||++-|+.+++-+++. ++||+.||.|++|++ ++.++..+.+|..-+++
T Consensus       149 l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYs  224 (745)
T KOG0301|consen  149 LPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYS  224 (745)
T ss_pred             cCCCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeeeccceEEEE
Confidence            88889999999999999986  667899999999999999987755 579999999999999 77888899999999999


Q ss_pred             EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 008467          447 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK  522 (564)
Q Consensus       447 i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~  522 (564)
                      +...+.+.         .++|++.|++++||+..  .+...+.--...|+++.+-++|. |++|+.||.|+||...
T Consensus       225 is~~~~~~---------~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  225 ISMALSDG---------LIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD  288 (745)
T ss_pred             EEecCCCC---------eEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence            99555443         68999999999999986  77777775556899999988887 5678889999999876

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2e-28  Score=218.49  Aligned_cols=286  Identities=24%  Similarity=0.427  Sum_probs=229.2

Q ss_pred             eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467          209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  288 (564)
Q Consensus       209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  288 (564)
                      +..+.||.+.|..++-.....++.++|.|.+++||.++++.+..                 .+.+|.+.|.++.|++.+.
T Consensus       141 vre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~-----------------~Y~GH~GSVNsikfh~s~~  203 (481)
T KOG0300|consen  141 VRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLA-----------------TYTGHTGSVNSIKFHNSGL  203 (481)
T ss_pred             hhhhcccccceeeehhhcCCcceeecccccceeEEeecccccee-----------------eecccccceeeEEeccccc
Confidence            34678999999999988777899999999999999999876531                 2335678899999999999


Q ss_pred             EEEEEeCCCeEEEEEC------CC-----------------------------------ceeEeecCCCCCEEEEEeCCC
Q 008467          289 LLATGSYDGQARIWST------NG-----------------------------------DLKCTLSKHKGPIFSLKWNKK  327 (564)
Q Consensus       289 ~l~sg~~dg~i~vw~~------~~-----------------------------------~~~~~~~~h~~~V~~l~~~~~  327 (564)
                      ++++++.|++..||..      ..                                   ...+.+.+|.+.|.+..|...
T Consensus       204 L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~g  283 (481)
T KOG0300|consen  204 LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAG  283 (481)
T ss_pred             eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcC
Confidence            9999999999999951      00                                   023456778888888888888


Q ss_pred             CCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEE
Q 008467          328 GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKW  407 (564)
Q Consensus       328 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~  407 (564)
                      |++++++|+|++..+||+++++                                         ++..+.||..+.+-++-
T Consensus       284 g~Q~vTaSWDRTAnlwDVEtge-----------------------------------------~v~~LtGHd~ELtHcst  322 (481)
T KOG0300|consen  284 GQQMVTASWDRTANLWDVETGE-----------------------------------------VVNILTGHDSELTHCST  322 (481)
T ss_pred             cceeeeeeccccceeeeeccCc-----------------------------------------eeccccCcchhcccccc
Confidence            8888888888888888887765                                         44567889999999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEeCCCCe-eeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-EE
Q 008467          408 DPTGSLLASCSDDVTAKIWNMKQDK-YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-LL  485 (564)
Q Consensus       408 ~~~~~~las~s~dg~i~iwd~~~~~-~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~  485 (564)
                      +|..+++++.|.|.+.|+||++..- .+..|++|...|+++.|.-+.          -+++||.|.+|+|||+++.+ .+
T Consensus       323 HptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd----------~vVSgSDDrTvKvWdLrNMRspl  392 (481)
T KOG0300|consen  323 HPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD----------RVVSGSDDRTVKVWDLRNMRSPL  392 (481)
T ss_pred             CCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC----------ceeecCCCceEEEeeeccccCcc
Confidence            9999999999999999999998543 367789999999999998764          37899999999999999754 46


Q ss_pred             EEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEE----ecCCC-EEEEEEccCC--CEEEEEEcCCcEE
Q 008467          486 YSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY----TGNGG-IFEVCWNKEG--DKIAACFANHTVC  558 (564)
Q Consensus       486 ~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~----~~~~~-i~~~~w~~~g--~~la~~~~~~~v~  558 (564)
                      .++. ...+++.++.+..+..||.--.+..|++||+....+...-    .++.. +.+.+|..+-  .-|.+|+-|..+.
T Consensus       393 ATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~  471 (481)
T KOG0300|consen  393 ATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVA  471 (481)
T ss_pred             eeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceee
Confidence            6665 4578999999998899999888899999999765543221    22333 6789997653  4666777788888


Q ss_pred             EEEee
Q 008467          559 VLDFR  563 (564)
Q Consensus       559 v~~~~  563 (564)
                      =|++.
T Consensus       472 gW~in  476 (481)
T KOG0300|consen  472 GWKIN  476 (481)
T ss_pred             eeEec
Confidence            77763

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=3.7e-27  Score=240.90  Aligned_cols=227  Identities=18%  Similarity=0.346  Sum_probs=181.9

Q ss_pred             EeCCCeEEEEECCC-ceeEeecCCCCCEEEEEeCCC-CCEEEEeeCCCcEEEEECCCcce-eEEEeecccCeEEEEcCCC
Q 008467          293 GSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKTEEW-KQQFEFHSGPTLDVDWRNN  369 (564)
Q Consensus       293 g~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~  369 (564)
                      |+.+|.+++|+... .....+.+|.++|.+++|+|+ +++|++|+.|++|+|||+.++.. ...                
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~----------------  113 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE----------------  113 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc----------------
Confidence            66788999998643 345678899999999999997 78999999999999999976421 000                


Q ss_pred             ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCE-EEEEeCCCcEEEEeCCCCeeeeecccccccEEEEE
Q 008467          370 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSL-LASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR  448 (564)
Q Consensus       370 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~-las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~  448 (564)
                                        ...++..+.+|...|.+++|+|++.. |++++.|++|+|||++++..+..+. |...|.++.
T Consensus       114 ------------------i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Sls  174 (568)
T PTZ00420        114 ------------------IKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLK  174 (568)
T ss_pred             ------------------cccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEE
Confidence                              01234567889999999999999875 5799999999999999988776665 567899999


Q ss_pred             EccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEE-----EEEcCCCCEEEEEeCCC----cEEEE
Q 008467          449 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYS-----LAFSPTGEYLASGSLDK----SMHIW  519 (564)
Q Consensus       449 ~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~-----~~~spdg~~lasgs~dg----~i~iw  519 (564)
                      |+|+|.         +|++++.|+.|+|||+++++.+.++.+|.+.+.+     ..|++++.+|+++|.|+    +|+||
T Consensus       175 wspdG~---------lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLW  245 (568)
T PTZ00420        175 WNIKGN---------LLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLW  245 (568)
T ss_pred             ECCCCC---------EEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEE
Confidence            999886         7888999999999999999999999999876543     34678999999988774    79999


Q ss_pred             eCCC-CeEEEEEecCC--CEEEEEEcc-CCCEEEEEEcCCcEEEEEee
Q 008467          520 SLKE-GKIVKTYTGNG--GIFEVCWNK-EGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       520 ~~~~-~~~~~~~~~~~--~i~~~~w~~-~g~~la~~~~~~~v~v~~~~  563 (564)
                      |+++ ++.+.......  ++.-..|++ +|.++++|..|++|++|+++
T Consensus       246 Dlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~  293 (568)
T PTZ00420        246 DLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHS  293 (568)
T ss_pred             ECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEcc
Confidence            9985 55666554333  333345555 58899999999999999985

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=3.6e-28  Score=250.22  Aligned_cols=282  Identities=26%  Similarity=0.397  Sum_probs=214.2

Q ss_pred             ceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCC--CCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC
Q 008467          208 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADG--TSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG  285 (564)
Q Consensus       208 ~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~  285 (564)
                      .+..+..|.+.|+|+.|+|||++||+||.|+.|.||+....  ......+.+..++...+.. .....|..+|..++|+|
T Consensus        61 ~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~-~~l~~H~~DV~Dv~Wsp  139 (942)
T KOG0973|consen   61 HLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVV-SILRGHDSDVLDVNWSP  139 (942)
T ss_pred             hheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEE-EEEecCCCccceeccCC
Confidence            45667889999999999999999999999999999998741  1111122222222222221 12234788999999999


Q ss_pred             CCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEE
Q 008467          286 EGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV  364 (564)
Q Consensus       286 ~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~  364 (564)
                      ++.+|++++.|+.|.||+.. ......+.+|.+.|-++.|.|-|+||++-+.|++|+||...+..+.+.+..+..     
T Consensus       140 ~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~-----  214 (942)
T KOG0973|consen  140 DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFE-----  214 (942)
T ss_pred             CccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchh-----
Confidence            99999999999999999964 467778999999999999999999999999999999998654333332211110     


Q ss_pred             EcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC----CCcEEEEeCCCCeeeeecccc
Q 008467          365 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD----DVTAKIWNMKQDKYVHDLREH  440 (564)
Q Consensus       365 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~----dg~i~iwd~~~~~~~~~~~~~  440 (564)
                                                   . ..-...+..+.|||||++|++...    -.++.|.+-.+.+.-..|.+|
T Consensus       215 -----------------------------~-~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH  264 (942)
T KOG0973|consen  215 -----------------------------E-SPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGH  264 (942)
T ss_pred             -----------------------------h-CCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecC
Confidence                                         0 011234667999999999998643    336888888888888899999


Q ss_pred             cccEEEEEEccCCCCCC-------CCC-CcEEEEEEeCCCeEEEEeCCCCeEEEEEeC-CCCCEEEEEEcCCCCEEEEEe
Q 008467          441 SKEIYTIRWSPTGSGTN-------NPN-QQLILASASFDSTVKLWDVELGKLLYSLNG-HREPVYSLAFSPTGEYLASGS  511 (564)
Q Consensus       441 ~~~i~~i~~~p~~~~~~-------~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-h~~~i~~~~~spdg~~lasgs  511 (564)
                      .+++.+++|+|.--...       .++ ...++|+||.|++|.||.....+++..... ...+|.+++|||||..|.++|
T Consensus       265 ~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS  344 (942)
T KOG0973|consen  265 SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACS  344 (942)
T ss_pred             CCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEe
Confidence            99999999998421111       122 224899999999999999987777665432 246899999999999999999


Q ss_pred             CCCcEEEEeCCCCe
Q 008467          512 LDKSMHIWSLKEGK  525 (564)
Q Consensus       512 ~dg~i~iw~~~~~~  525 (564)
                      .||+|.++..+..+
T Consensus       345 ~DGtV~~i~Fee~E  358 (942)
T KOG0973|consen  345 LDGTVALIHFEEKE  358 (942)
T ss_pred             cCCeEEEEEcchHH
Confidence            99999999988654

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=2e-27  Score=212.40  Aligned_cols=291  Identities=23%  Similarity=0.348  Sum_probs=213.0

Q ss_pred             cCCceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEEC
Q 008467          205 PNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN  284 (564)
Q Consensus       205 ~~~~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s  284 (564)
                      .+-.+.+|+||.+.|++++|+.||++|||++.|++||||++.+-....             |...+.+.....-|.+.|+
T Consensus        75 Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~e-------------Hr~~R~nve~dhpT~V~Fa  141 (420)
T KOG2096|consen   75 HPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKE-------------HRCIRQNVEYDHPTRVVFA  141 (420)
T ss_pred             cchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhh-------------hhHhhccccCCCceEEEEC
Confidence            334557899999999999999999999999999999999987532110             1111112223457899999


Q ss_pred             CCCCEEEEEeC-CCeEEEEEC----CCcee---------EeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcce
Q 008467          285 GEGTLLATGSY-DGQARIWST----NGDLK---------CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW  350 (564)
Q Consensus       285 ~~g~~l~sg~~-dg~i~vw~~----~~~~~---------~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~  350 (564)
                      ||.+-++.... ...+++|..    +|...         ..-..|.-+|..+-....+.+|++++.|..|.+|+++ |+.
T Consensus       142 pDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~  220 (420)
T KOG2096|consen  142 PDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQL  220 (420)
T ss_pred             CCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cce
Confidence            99887666554 458899964    23221         1224577788888888889999999999999999998 788


Q ss_pred             eEEEeecccCeEEEEcCCCceE-EEEeCCCeEEEEEcC--------CCceeeEecCCCcceEEEEECCCCCEEEEEeCCC
Q 008467          351 KQQFEFHSGPTLDVDWRNNVSF-ATSSTDNMIYVCKIG--------ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV  421 (564)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~i~~~~~~--------~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg  421 (564)
                      ++.+........+....++.+| ++++.---+++|.+-        +-+.+..+.||.+.|..++|+++...++|.|.||
T Consensus       221 L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG  300 (420)
T KOG2096|consen  221 LQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDG  300 (420)
T ss_pred             eeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCC
Confidence            8777766665566666666555 555666667788642        1234567889999999999999999999999999


Q ss_pred             cEEEEeCCCCe-------eeeec----ccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEE-e
Q 008467          422 TAKIWNMKQDK-------YVHDL----REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-N  489 (564)
Q Consensus       422 ~i~iwd~~~~~-------~~~~~----~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~  489 (564)
                      ++||||++-..       .+.+.    ....+.-..+..+|.|.         .|| .+.-.+++++..++|+..-++ +
T Consensus       301 ~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~---------~lA-~s~gs~l~~~~se~g~~~~~~e~  370 (420)
T KOG2096|consen  301 KWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGD---------SLA-VSFGSDLKVFASEDGKDYPELED  370 (420)
T ss_pred             cEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCc---------EEE-eecCCceEEEEcccCccchhHHH
Confidence            99999975321       11111    11223334778888875         343 445678999999998876655 4


Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008467          490 GHREPVYSLAFSPTGEYLASGSLDKSMHIWS  520 (564)
Q Consensus       490 ~h~~~i~~~~~spdg~~lasgs~dg~i~iw~  520 (564)
                      .|...|.+|+|+|+|+++|++| |..++++.
T Consensus       371 ~h~~~Is~is~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  371 IHSTTISSISYSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             hhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence            5889999999999999999988 55677765

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=7.2e-27  Score=238.83  Aligned_cols=245  Identities=20%  Similarity=0.325  Sum_probs=183.6

Q ss_pred             EEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC-CCEEEEEeCCCeEEEEECCCc----
Q 008467          233 SGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE-GTLLATGSYDGQARIWSTNGD----  307 (564)
Q Consensus       233 sgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~-g~~l~sg~~dg~i~vw~~~~~----  307 (564)
                      +|+.++.+++|+.....             .+..+    ..|...|.+++|+|+ +.+|++|+.||.|+||+....    
T Consensus        49 gGG~~gvI~L~~~~r~~-------------~v~~L----~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~  111 (568)
T PTZ00420         49 GGGLIGAIRLENQMRKP-------------PVIKL----KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESV  111 (568)
T ss_pred             CCCceeEEEeeecCCCc-------------eEEEE----cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccc
Confidence            36678889999864321             11122    245678999999996 799999999999999997521    


Q ss_pred             -----eeEeecCCCCCEEEEEeCCCCCEE-EEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeE
Q 008467          308 -----LKCTLSKHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMI  381 (564)
Q Consensus       308 -----~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  381 (564)
                           ....+.+|...|.+++|+|++..+ ++++.|++|+|||++++.....                            
T Consensus       112 ~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~----------------------------  163 (568)
T PTZ00420        112 KEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQ----------------------------  163 (568)
T ss_pred             cccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEE----------------------------
Confidence                 234678899999999999998765 6899999999999987643211                            


Q ss_pred             EEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEE-----ccCCCCC
Q 008467          382 YVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW-----SPTGSGT  456 (564)
Q Consensus       382 ~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~-----~p~~~~~  456 (564)
                                   +. |...|.+++|+|+|.+|++++.|+.|+|||++++..+..+.+|.+.+.+..+     ++++.  
T Consensus       164 -------------i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~--  227 (568)
T PTZ00420        164 -------------IN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDN--  227 (568)
T ss_pred             -------------Ee-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCC--
Confidence                         11 3456889999999999999999999999999999999999999876544332     34332  


Q ss_pred             CCCCCcEEEEEEeCCC----eEEEEeCCC-CeEEEEEe--CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE--E
Q 008467          457 NNPNQQLILASASFDS----TVKLWDVEL-GKLLYSLN--GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI--V  527 (564)
Q Consensus       457 ~~~~~~~~l~s~s~dg----~i~iwd~~~-~~~~~~~~--~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~--~  527 (564)
                             +|++++.|+    +|+|||+++ ++++..+.  .+...+......++|.++++|+.|+.|++|++..+.+  +
T Consensus       228 -------~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l  300 (568)
T PTZ00420        228 -------YILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKV  300 (568)
T ss_pred             -------EEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEee
Confidence                   567766664    799999995 55555443  3334444455566799999999999999999987753  3


Q ss_pred             EEEecCCCEEEEEEccCC
Q 008467          528 KTYTGNGGIFEVCWNKEG  545 (564)
Q Consensus       528 ~~~~~~~~i~~~~w~~~g  545 (564)
                      ..+....+...++|.|+-
T Consensus       301 ~~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        301 NEYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             cccccCCCccceEEcccc
Confidence            334444567788998864

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=7.6e-29  Score=225.18  Aligned_cols=285  Identities=20%  Similarity=0.357  Sum_probs=228.1

Q ss_pred             eeEccCCccceEEEEECCCC-CEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC
Q 008467          209 VTILEGHTSEVCACAWSPAG-SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG  287 (564)
Q Consensus       209 ~~~l~~h~~~V~~~~~sp~~-~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g  287 (564)
                      +.-|.||.+.|.|++=+|.. ..+|||+.||.|+|||+..-.+..                 ....|.+.|..+++..  
T Consensus        59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~-----------------~f~AH~G~V~Gi~v~~--  119 (433)
T KOG0268|consen   59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR-----------------TFKAHEGLVRGICVTQ--  119 (433)
T ss_pred             hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh-----------------eeecccCceeeEEecc--
Confidence            45679999999999999986 899999999999999987533211                 1123456788888876  


Q ss_pred             CEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcC
Q 008467          288 TLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR  367 (564)
Q Consensus       288 ~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  367 (564)
                      ..+++++.|.+|+.|..++....++.+ .+.+.++.-+..++.++||+.  .|-|||.+....++.+......+.++.+.
T Consensus       120 ~~~~tvgdDKtvK~wk~~~~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfN  196 (433)
T KOG0268|consen  120 TSFFTVGDDKTVKQWKIDGPPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFN  196 (433)
T ss_pred             cceEEecCCcceeeeeccCCcceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecC
Confidence            678899999999999998876665543 356677777777788888875  69999998888888888777777777765


Q ss_pred             C--CceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-eeeeecccccccE
Q 008467          368 N--NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD-KYVHDLREHSKEI  444 (564)
Q Consensus       368 ~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~-~~~~~~~~~~~~i  444 (564)
                      +  ...+++|..|+.|.++|+.+..|++... -.-.-+.|+|+|.+-.+++|++|..+..+|++.- .++...++|...|
T Consensus       197 pvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV  275 (433)
T KOG0268|consen  197 PVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAV  275 (433)
T ss_pred             CCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeE
Confidence            4  4567888899999999999998876543 1334678999998778899999999999999764 4567778999999


Q ss_pred             EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEE-eCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 008467          445 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE  523 (564)
Q Consensus       445 ~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~  523 (564)
                      .++.|+|.|.         -+++||.|.+||||.+..+...-.. +.--..|.++.||.|.+|+++||.|+.|++|....
T Consensus       276 ~dVdfsptG~---------EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A  346 (433)
T KOG0268|consen  276 MDVDFSPTGQ---------EFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA  346 (433)
T ss_pred             EEeccCCCcc---------hhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecch
Confidence            9999999997         4899999999999999866432111 01124699999999999999999999999998765


Q ss_pred             Ce
Q 008467          524 GK  525 (564)
Q Consensus       524 ~~  525 (564)
                      .+
T Consensus       347 se  348 (433)
T KOG0268|consen  347 SE  348 (433)
T ss_pred             hh
Confidence            43

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.96  E-value=5.7e-27  Score=229.61  Aligned_cols=272  Identities=22%  Similarity=0.359  Sum_probs=231.8

Q ss_pred             ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCcee---EeecCCCCCEEE-EEeCC-CCCEEEEeeCCCcEEEEECC
Q 008467          272 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLK---CTLSKHKGPIFS-LKWNK-KGDYLLTGSCDKTAIVWDVK  346 (564)
Q Consensus       272 ~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~---~~~~~h~~~V~~-l~~~~-~~~~l~s~s~D~~v~iwd~~  346 (564)
                      .+|..+|..++..+. ..+++++.||++++|+..++..   ..+.+|.+-|.. +++.+ ++-.+++|+.|+++.+|.+.
T Consensus        11 ~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~   89 (745)
T KOG0301|consen   11 EGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLS   89 (745)
T ss_pred             ccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecC
Confidence            356778888876654 4789999999999999755432   346777777766 77775 33459999999999999999


Q ss_pred             CcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEE
Q 008467          347 TEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW  426 (564)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iw  426 (564)
                      .......+..|...+.++.-..+..++++|-|.++++|..++  ....+.||+..|.+++.-|++ .++|||.|.+|++|
T Consensus        90 ~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~--l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklW  166 (745)
T KOG0301|consen   90 QAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGE--LVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLW  166 (745)
T ss_pred             CCCchhhhhccccceeeeecCCcCceEecccccceEEecchh--hhcccCCcchheeeeeecCCC-cEEeccCcceeeec
Confidence            999899999999999999977777799999999999998754  445689999999999999988 67899999999999


Q ss_pred             eCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCE
Q 008467          427 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY  506 (564)
Q Consensus       427 d~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~  506 (564)
                      .-  ++.+.+|.+|...|..++.-|++.          ++||+.||.|++|++ +|.++.++.+|..-|++++..+++..
T Consensus       167 k~--~~~l~tf~gHtD~VRgL~vl~~~~----------flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~  233 (745)
T KOG0301|consen  167 KG--GTLLKTFSGHTDCVRGLAVLDDSH----------FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGL  233 (745)
T ss_pred             cC--CchhhhhccchhheeeeEEecCCC----------eEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCe
Confidence            75  678899999999999999988753          789999999999999 69999999999999999999999999


Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEEEecCC-CEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          507 LASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       507 lasgs~dg~i~iw~~~~~~~~~~~~~~~-~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      ++++|.|++++||+..  ++++.....+ .|++++.=+.|+.++. ++||.|+||..+
T Consensus       234 Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg-~SDG~VrVfT~~  288 (745)
T KOG0301|consen  234 IVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVG-GSDGRVRVFTVD  288 (745)
T ss_pred             EEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEe-ccCceEEEEEec
Confidence            9999999999999976  7788777655 7888887777876555 479999999764

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=2.3e-26  Score=205.40  Aligned_cols=266  Identities=21%  Similarity=0.358  Sum_probs=210.4

Q ss_pred             ccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeC
Q 008467          216 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY  295 (564)
Q Consensus       216 ~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~  295 (564)
                      ...|..+.|+|.+..|+.++.||++++|++......          .        .-.+..++++++|.++ ..+++|+.
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~----------~--------~~~~~~plL~c~F~d~-~~~~~G~~   73 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK----------L--------KFKHGAPLLDCAFADE-STIVTGGL   73 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh----------h--------heecCCceeeeeccCC-ceEEEecc
Confidence            467899999999988888999999999998653210          0        0124578999999874 67889999


Q ss_pred             CCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEE
Q 008467          296 DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATS  375 (564)
Q Consensus       296 dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (564)
                      ||.|+.+|.+......+..|..+|.++.+++....+++||+|++|++||.+.......+.                    
T Consensus        74 dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d--------------------  133 (323)
T KOG1036|consen   74 DGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD--------------------  133 (323)
T ss_pred             CceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc--------------------
Confidence            999999999988888899999999999999999999999999999999998632211110                    


Q ss_pred             eCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecc--cccccEEEEEEccCC
Q 008467          376 STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR--EHSKEIYTIRWSPTG  453 (564)
Q Consensus       376 ~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~--~~~~~i~~i~~~p~~  453 (564)
                                            ....|.|+..  .|..|+.|+.|..+.+||+++.......+  ...-.+.+++.-|.+
T Consensus       134 ----------------------~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~  189 (323)
T KOG1036|consen  134 ----------------------QGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNG  189 (323)
T ss_pred             ----------------------cCceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCC
Confidence                                  1124555554  46788899999999999998766543222  123357888888865


Q ss_pred             CCCCCCCCcEEEEEEeCCCeEEEEeCCCC----eEEEEEeCCCC---------CEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008467          454 SGTNNPNQQLILASASFDSTVKLWDVELG----KLLYSLNGHRE---------PVYSLAFSPTGEYLASGSLDKSMHIWS  520 (564)
Q Consensus       454 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~h~~---------~i~~~~~spdg~~lasgs~dg~i~iw~  520 (564)
                      .+         .+.+|.||.|.+=.++..    +..+.++.|..         ||++|+|+|--..||||+.||.|.+||
T Consensus       190 eG---------y~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd  260 (323)
T KOG1036|consen  190 EG---------YVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWD  260 (323)
T ss_pred             Cc---------eEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEcc
Confidence            42         577899999988666654    45567777753         799999999999999999999999999


Q ss_pred             CCCCeEEEEEecC-CCEEEEEEccCCCEEEEEEc
Q 008467          521 LKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFA  553 (564)
Q Consensus       521 ~~~~~~~~~~~~~-~~i~~~~w~~~g~~la~~~~  553 (564)
                      ..+.+.++.+..- ..|..++|+.+|..||+++.
T Consensus       261 ~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  261 LFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             CcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence            9998888777654 56999999999999999864

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.4e-27  Score=232.14  Aligned_cols=287  Identities=20%  Similarity=0.380  Sum_probs=225.0

Q ss_pred             EEEECC-CCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCeE
Q 008467          221 ACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQA  299 (564)
Q Consensus       221 ~~~~sp-~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i  299 (564)
                      ++..++ .+++|+|||.||.|++|++.......      ...     .......|+..|..+....+|+.|++++.|-+|
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~------s~~-----~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTV   97 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEP------STP-----YIASMEHHSDWVNDIILCGNGKTLISASSDTTV   97 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCc------ccc-----hhhhhhhhHhHHhhHHhhcCCCceEEecCCceE
Confidence            444454 56789999999999999976432110      000     112223466788888888999999999999999


Q ss_pred             EEEECCCc---eeEeecCCCCCEEEEEe-CCCCCEEEEeeCCCcEEEEECCCcce--eEEEeecccCeEEEEcCCCceEE
Q 008467          300 RIWSTNGD---LKCTLSKHKGPIFSLKW-NKKGDYLLTGSCDKTAIVWDVKTEEW--KQQFEFHSGPTLDVDWRNNVSFA  373 (564)
Q Consensus       300 ~vw~~~~~---~~~~~~~h~~~V~~l~~-~~~~~~l~s~s~D~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  373 (564)
                      ++|+....   ...++..|+..|.|++. -++...++||+-|+.|++||++++..  ...+.                  
T Consensus        98 K~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n------------------  159 (735)
T KOG0308|consen   98 KVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFN------------------  159 (735)
T ss_pred             EEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcc------------------
Confidence            99997643   45578899999999999 78888999999999999999998732  11111                  


Q ss_pred             EEeCCCeEEEEEcCCCceeeEec-CCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccC
Q 008467          374 TSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT  452 (564)
Q Consensus       374 ~~~~d~~i~~~~~~~~~~~~~~~-~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~  452 (564)
                            .+         +...+. |+...|.+++.++.|..|++|+..+.+++||.++.+.+..+++|...|..+..+++
T Consensus       160 ------~~---------t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dD  224 (735)
T KOG0308|consen  160 ------NV---------TVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDD  224 (735)
T ss_pred             ------cc---------ccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCC
Confidence                  11         111122 78888999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CeEEEEEe
Q 008467          453 GSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE-GKIVKTYT  531 (564)
Q Consensus       453 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~-~~~~~~~~  531 (564)
                      |.         .++|+|.||+|++||+...+|++++..|...|+++..+|+=..+.+|+.||.|..=|+++ .+....+.
T Consensus       225 Gt---------~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick  295 (735)
T KOG0308|consen  225 GT---------RLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICK  295 (735)
T ss_pred             CC---------eEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeec
Confidence            86         588999999999999999999999999999999999999999999999999999999988 44555555


Q ss_pred             cCCCEEEEEEccCCCEEEEEEcCCcEEEE
Q 008467          532 GNGGIFEVCWNKEGDKIAACFANHTVCVL  560 (564)
Q Consensus       532 ~~~~i~~~~w~~~g~~la~~~~~~~v~v~  560 (564)
                      ....+..+..+.+.+-+-++..|+.|.=|
T Consensus       296 ~daPv~~l~~~~~~~~~WvtTtds~I~rW  324 (735)
T KOG0308|consen  296 EDAPVLKLHLHEHDNSVWVTTTDSSIKRW  324 (735)
T ss_pred             CCCchhhhhhccccCCceeeeccccceec
Confidence            55555555555444443444455555444

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1e-25  Score=202.37  Aligned_cols=242  Identities=19%  Similarity=0.295  Sum_probs=199.2

Q ss_pred             eecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCC-CceEEEEe--CCCeEEEEEcC
Q 008467          311 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NVSFATSS--TDNMIYVCKIG  387 (564)
Q Consensus       311 ~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~d~~i~~~~~~  387 (564)
                      .+....+.|.++.|+++|.++++++.|.+++|||..+++.++++..+.-.+-.+.+.. ....+.++  .|.+|+..++.
T Consensus         9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~   88 (311)
T KOG1446|consen    9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH   88 (311)
T ss_pred             ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEee
Confidence            4455678899999999999999999999999999999999998887765555555532 23333344  38899999999


Q ss_pred             CCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEE
Q 008467          388 ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAS  467 (564)
Q Consensus       388 ~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s  467 (564)
                      .++-++.|.||...|++++.+|-+..++|+|.|++||+||++..++..-+.....  ..++|.|.|-         ++|+
T Consensus        89 dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GL---------ifA~  157 (311)
T KOG1446|consen   89 DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGL---------IFAL  157 (311)
T ss_pred             cCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCc---------EEEE
Confidence            9999999999999999999999999999999999999999998887666554433  3467888873         7888


Q ss_pred             EeCCCeEEEEeCCCC--eEE--EEEe-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCC----EEE
Q 008467          468 ASFDSTVKLWDVELG--KLL--YSLN-GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG----IFE  538 (564)
Q Consensus       468 ~s~dg~i~iwd~~~~--~~~--~~~~-~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~----i~~  538 (564)
                      +.....|++||++.-  .+.  ..+. +.....+.|.|||||++|..++..+.+++.|.-+|.+..++.....    ..+
T Consensus       158 ~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~  237 (311)
T KOG1446|consen  158 ANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLS  237 (311)
T ss_pred             ecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCccee
Confidence            877779999999863  222  2232 3456789999999999999999999999999999999988876432    257


Q ss_pred             EEEccCCCEEEEEEcCCcEEEEEee
Q 008467          539 VCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       539 ~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      .+|.|||+++..|+.||+|+||+++
T Consensus       238 a~ftPds~Fvl~gs~dg~i~vw~~~  262 (311)
T KOG1446|consen  238 ATFTPDSKFVLSGSDDGTIHVWNLE  262 (311)
T ss_pred             EEECCCCcEEEEecCCCcEEEEEcC
Confidence            8999999999999999999999974

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=3.5e-26  Score=215.93  Aligned_cols=275  Identities=23%  Similarity=0.345  Sum_probs=222.7

Q ss_pred             cceEEEEECCCCC-EEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeC
Q 008467          217 SEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY  295 (564)
Q Consensus       217 ~~V~~~~~sp~~~-~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~  295 (564)
                      +.|..++|||... -+|+.+ .-.+.||+..+....             +.+    ..-.+.|.+++|-.||++|+.|..
T Consensus        27 ~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~-------------k~~----srFk~~v~s~~fR~DG~LlaaGD~   88 (487)
T KOG0310|consen   27 NSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVR-------------KTF----SRFKDVVYSVDFRSDGRLLAAGDE   88 (487)
T ss_pred             CcceeEecCCCCCCceEEec-ccEEEEEecchhhhh-------------hhH----HhhccceeEEEeecCCeEEEccCC
Confidence            6799999999754 344433 245777775432211             100    111357999999999999999999


Q ss_pred             CCeEEEEECCCc-eeEeecCCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCC--Cce
Q 008467          296 DGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN--NVS  371 (564)
Q Consensus       296 dg~i~vw~~~~~-~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~  371 (564)
                      .|.|+|+|.... ....+..|+.||..+.|+|.++ .|++|+.|+.+++||+.+...+..+..|...+.+.+|.+  +..
T Consensus        89 sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hi  168 (487)
T KOG0310|consen   89 SGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHI  168 (487)
T ss_pred             cCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeE
Confidence            999999995542 4557889999999999999775 567888889999999999887557888999998888864  456


Q ss_pred             EEEEeCCCeEEEEEcCCC-ceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCee-eeecccccccEEEEEE
Q 008467          372 FATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY-VHDLREHSKEIYTIRW  449 (564)
Q Consensus       372 ~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~-~~~~~~~~~~i~~i~~  449 (564)
                      +++++-||.|++||.+.. .++..+ .|..+|..+.+-|.|.++|+++.. .+++||+.++.. +..+..|...|+|+++
T Consensus       169 vvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l  246 (487)
T KOG0310|consen  169 VVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRL  246 (487)
T ss_pred             EEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhhcccceEEEEEe
Confidence            899999999999999876 555555 588999999999999999998765 799999985544 4555569999999999


Q ss_pred             ccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 008467          450 SPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL  521 (564)
Q Consensus       450 ~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~  521 (564)
                      ..++.         .|+||+-|+.|++||+.+-+.++.+. ..+||.+++.||+++.++.|-.+|.+.+=+.
T Consensus       247 ~s~~~---------rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~  308 (487)
T KOG0310|consen  247 ASDST---------RLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRR  308 (487)
T ss_pred             ecCCc---------eEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehh
Confidence            87654         68999999999999999889998887 6789999999999999999999998877643

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=4.3e-26  Score=203.94  Aligned_cols=259  Identities=21%  Similarity=0.347  Sum_probs=203.9

Q ss_pred             eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467          209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  288 (564)
Q Consensus       209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  288 (564)
                      ...+..|.++++++|.  ++.++||||.|-+|+|||+......+                 ....|.+.|+++.|.+.-.
T Consensus        36 lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg-----------------~ll~HagsitaL~F~~~~S   96 (362)
T KOG0294|consen   36 LFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLG-----------------ILLSHAGSITALKFYPPLS   96 (362)
T ss_pred             cccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhc-----------------ceeccccceEEEEecCCcc
Confidence            3456789999999998  48999999999999999987643221                 1123467899999999765


Q ss_pred             --EEEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEE
Q 008467          289 --LLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD  365 (564)
Q Consensus       289 --~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~  365 (564)
                        .|++|+.||.|.+|+... .+...+.+|++.|+.++.+|.|+.-++.+.|+.++.||+-+|..-.             
T Consensus        97 ~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~-------------  163 (362)
T KOG0294|consen   97 KSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAF-------------  163 (362)
T ss_pred             hhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccce-------------
Confidence              899999999999999865 5667899999999999999999999999999999999997764221             


Q ss_pred             cCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEE
Q 008467          366 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY  445 (564)
Q Consensus       366 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~  445 (564)
                                       ++.++          +  ..+.+.|+|.|.+++.++.+ .|-||.+.+......+.. ...+.
T Consensus       164 -----------------v~~L~----------~--~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~-~~r~l  212 (362)
T KOG0294|consen  164 -----------------VLNLK----------N--KATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIEN-PKRIL  212 (362)
T ss_pred             -----------------eeccC----------C--cceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhc-cccce
Confidence                             11111          1  12238999999988877776 588998877655444332 24566


Q ss_pred             EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEE--cCCCCEEEEEeCCCcEEEEeCCC
Q 008467          446 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAF--SPTGEYLASGSLDKSMHIWSLKE  523 (564)
Q Consensus       446 ~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~--spdg~~lasgs~dg~i~iw~~~~  523 (564)
                      ++.|-..+          .|++|..|+.|++||..++.+...+.+|...|-++.+  .|++.+|+|+|.||.|+|||++.
T Consensus       213 ~~~~l~~~----------~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~  282 (362)
T KOG0294|consen  213 CATFLDGS----------ELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDM  282 (362)
T ss_pred             eeeecCCc----------eEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccc
Confidence            76664432          6889999999999999999999999999999999984  57899999999999999999986


Q ss_pred             C-----eEEEEEecCCCEEEEE
Q 008467          524 G-----KIVKTYTGNGGIFEVC  540 (564)
Q Consensus       524 ~-----~~~~~~~~~~~i~~~~  540 (564)
                      .     +++..+..+..++++.
T Consensus       283 ~~k~~~~~l~e~n~~~RltCl~  304 (362)
T KOG0294|consen  283 ETKKRPTLLAELNTNVRLTCLR  304 (362)
T ss_pred             cccCCcceeEEeecCCccceee
Confidence            5     4666666555555543

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.95  E-value=1.3e-26  Score=215.37  Aligned_cols=235  Identities=25%  Similarity=0.374  Sum_probs=203.6

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEE
Q 008467          276 KDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF  354 (564)
Q Consensus       276 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  354 (564)
                      ..++++...|....+++|+.|..+.++|.. ++....+.+|...|+.+.|+|+...+++++.|..|+||.......    
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~----  295 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE----  295 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC----
Confidence            468888888887899999999999999975 566778999999999999999999999999999999998654321    


Q ss_pred             eecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeee
Q 008467          355 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV  434 (564)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~  434 (564)
                                                           ......|..+|+.+..+|.|.+|+++|+|+++-+.|++++..+
T Consensus       296 -------------------------------------~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~l  338 (506)
T KOG0289|consen  296 -------------------------------------PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQL  338 (506)
T ss_pred             -------------------------------------ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEE
Confidence                                                 1234568999999999999999999999999999999999877


Q ss_pred             eeccc--ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC
Q 008467          435 HDLRE--HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL  512 (564)
Q Consensus       435 ~~~~~--~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~  512 (564)
                      .....  ..-.+++.+|+|+|-         +|.+|..||.|+|||+.++..+..+.+|.++|..|+|+.+|.|||++..
T Consensus       339 t~vs~~~s~v~~ts~~fHpDgL---------ifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad  409 (506)
T KOG0289|consen  339 TVVSDETSDVEYTSAAFHPDGL---------IFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD  409 (506)
T ss_pred             EEEeeccccceeEEeeEcCCce---------EEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec
Confidence            55443  223589999999984         8999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEeCCCCeEEEEEecCC--CEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467          513 DKSMHIWSLKEGKIVKTYTGNG--GIFEVCWNKEGDKIAACFANHTVCVLDF  562 (564)
Q Consensus       513 dg~i~iw~~~~~~~~~~~~~~~--~i~~~~w~~~g~~la~~~~~~~v~v~~~  562 (564)
                      |+.|++||++.-+..+++.-..  ++.+++|++.|++|+.++.+  +.||-+
T Consensus       410 d~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~--l~Vy~~  459 (506)
T KOG0289|consen  410 DGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSD--LQVYIC  459 (506)
T ss_pred             CCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecce--eEEEEE
Confidence            9999999999888888876543  59999999999999999655  555543

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=4e-27  Score=203.21  Aligned_cols=255  Identities=26%  Similarity=0.418  Sum_probs=196.4

Q ss_pred             eEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC--CC
Q 008467          210 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--EG  287 (564)
Q Consensus       210 ~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~--~g  287 (564)
                      .+-.+|.+.|..+...--|++|||++.|++|||+.+.+...        ..  .+    ....+|.++|.-++|-.  -|
T Consensus         5 ~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~--------s~--ll----~~L~Gh~GPVwqv~wahPk~G   70 (299)
T KOG1332|consen    5 TIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ--------SK--LL----AELTGHSGPVWKVAWAHPKFG   70 (299)
T ss_pred             ehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC--------ce--ee----eEecCCCCCeeEEeecccccC
Confidence            34567999999998888999999999999999999865421        01  11    12345688999999977  89


Q ss_pred             CEEEEEeCCCeEEEEECCCc---eeEeecCCCCCEEEEEeCCCC--CEEEEeeCCCcEEEEECCCc-ceeEEEeecccCe
Q 008467          288 TLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKG--DYLLTGSCDKTAIVWDVKTE-EWKQQFEFHSGPT  361 (564)
Q Consensus       288 ~~l~sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~~~--~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~~~~  361 (564)
                      .+||++++||.|.||..++.   .......|..+|.+++|.|.+  -.|+++++||.|.|.+.+.. .+..         
T Consensus        71 ~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t---------  141 (299)
T KOG1332|consen   71 TILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTT---------  141 (299)
T ss_pred             cEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccc---------
Confidence            99999999999999997654   234567899999999998864  56889999999999987543 1110         


Q ss_pred             EEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC---C-----------CEEEEEeCCCcEEEEe
Q 008467          362 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT---G-----------SLLASCSDDVTAKIWN  427 (564)
Q Consensus       362 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~---~-----------~~las~s~dg~i~iwd  427 (564)
                                                    -+....|.-.|++++|.|-   |           +.|+||+.|..|+||+
T Consensus       142 ------------------------------~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~  191 (299)
T KOG1332|consen  142 ------------------------------SKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWK  191 (299)
T ss_pred             ------------------------------hhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeee
Confidence                                          1123446666777777664   3           5699999999999999


Q ss_pred             CCCCee--eeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE---EEEEeCCCCCEEEEEEcC
Q 008467          428 MKQDKY--VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL---LYSLNGHREPVYSLAFSP  502 (564)
Q Consensus       428 ~~~~~~--~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~h~~~i~~~~~sp  502 (564)
                      ...+..  -+.|.+|..-|..++|.|....     ....|||||.||+|.||..+....   ...+.....+++.++||+
T Consensus       192 ~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl-----~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~  266 (299)
T KOG1332|consen  192 FDSDSWKLERTLEGHKDWVRDVAWAPSVGL-----PKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSL  266 (299)
T ss_pred             cCCcchhhhhhhhhcchhhhhhhhccccCC-----CceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEec
Confidence            887643  3458899999999999997532     234799999999999998763211   112333456899999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCC
Q 008467          503 TGEYLASGSLDKSMHIWSLK  522 (564)
Q Consensus       503 dg~~lasgs~dg~i~iw~~~  522 (564)
                      .|+.|+.++.|+.|.+|.-.
T Consensus       267 sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  267 SGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             cccEEEEecCCcEEEEEEeC
Confidence            99999999999999999753

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.95  E-value=2.7e-27  Score=211.92  Aligned_cols=238  Identities=22%  Similarity=0.431  Sum_probs=203.1

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEEC-CCceeE--------eecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEEC
Q 008467          275 SKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKC--------TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV  345 (564)
Q Consensus       275 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~-~~~~~~--------~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~  345 (564)
                      .+.+-|..|||||++|++|+.||.|.+|+. .|++..        .+--|..+|.|+.|+.+...+++|+.||.|++|.+
T Consensus       213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri  292 (508)
T KOG0275|consen  213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI  292 (508)
T ss_pred             ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence            456889999999999999999999999995 454432        23357889999999999999999999999999999


Q ss_pred             CCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEE
Q 008467          346 KTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI  425 (564)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~i  425 (564)
                      ++|.+++.|.                                        +.|+..|+|+.|+.|+..+.++|.|.++||
T Consensus       293 ~tG~ClRrFd----------------------------------------rAHtkGvt~l~FSrD~SqiLS~sfD~tvRi  332 (508)
T KOG0275|consen  293 ETGQCLRRFD----------------------------------------RAHTKGVTCLSFSRDNSQILSASFDQTVRI  332 (508)
T ss_pred             ecchHHHHhh----------------------------------------hhhccCeeEEEEccCcchhhcccccceEEE
Confidence            9887665442                                        368889999999999999999999999999


Q ss_pred             EeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeC--CCCCEEEEEEcCC
Q 008467          426 WNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG--HREPVYSLAFSPT  503 (564)
Q Consensus       426 wd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--h~~~i~~~~~spd  503 (564)
                      --+++++++.+|++|..-|....|.++|.         .++++|.||+|++|+..+++|+.+++.  ...+|+++-.-|.
T Consensus       333 HGlKSGK~LKEfrGHsSyvn~a~ft~dG~---------~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PK  403 (508)
T KOG0275|consen  333 HGLKSGKCLKEFRGHSSYVNEATFTDDGH---------HIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPK  403 (508)
T ss_pred             eccccchhHHHhcCccccccceEEcCCCC---------eEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCC
Confidence            99999999999999999999999999986         688999999999999999999888754  4567888887775


Q ss_pred             C-CEEEEEeCCCcEEEEeCCCCeEEEEEec----CCCEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467          504 G-EYLASGSLDKSMHIWSLKEGKIVKTYTG----NGGIFEVCWNKEGDKIAACFANHTVCVLDF  562 (564)
Q Consensus       504 g-~~lasgs~dg~i~iw~~~~~~~~~~~~~----~~~i~~~~w~~~g~~la~~~~~~~v~v~~~  562 (564)
                      . ..++.+...++|+|-++. |.++++|..    .+.....+.+|.|.++-+...|+.+.-|++
T Consensus       404 npeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~  466 (508)
T KOG0275|consen  404 NPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSV  466 (508)
T ss_pred             CCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEe
Confidence            4 678889999999999985 788888864    234567889999999888878877655543

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.95  E-value=2.4e-26  Score=215.47  Aligned_cols=258  Identities=26%  Similarity=0.503  Sum_probs=202.0

Q ss_pred             EccCCccceEEEEECCCC-CEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC-CC
Q 008467          211 ILEGHTSEVCACAWSPAG-SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE-GT  288 (564)
Q Consensus       211 ~l~~h~~~V~~~~~sp~~-~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~-g~  288 (564)
                      ....|.++|+.+..-|+. .++||++..+.+.|||................-+.+   .    +|.+.=+.|+|++. .-
T Consensus       119 ~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L---~----gH~~eg~glsWn~~~~g  191 (422)
T KOG0264|consen  119 QKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRL---K----GHEKEGYGLSWNRQQEG  191 (422)
T ss_pred             EeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEE---E----eecccccccccccccce
Confidence            345699999999999974 688889999999999987643322211100000111   1    22333466999994 34


Q ss_pred             EEEEEeCCCeEEEEECCCc--------eeEeecCCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCcceeEEEeeccc
Q 008467          289 LLATGSYDGQARIWSTNGD--------LKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG  359 (564)
Q Consensus       289 ~l~sg~~dg~i~vw~~~~~--------~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~  359 (564)
                      .|++|+.|+.|++||.+..        .+..+.+|...|..++|++.. ..|.+++.|+.+.|||++++.          
T Consensus       192 ~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~----------  261 (422)
T KOG0264|consen  192 TLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT----------  261 (422)
T ss_pred             eEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC----------
Confidence            7889999999999997532        345688999999999999965 457889999999999998631          


Q ss_pred             CeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC-CCEEEEEeCCCcEEEEeCCCC-eeeeec
Q 008467          360 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQD-KYVHDL  437 (564)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~-~~~las~s~dg~i~iwd~~~~-~~~~~~  437 (564)
                                                   .++.....+|.++|+|++|+|- +.+|||||.|++|.+||+++- .+++.+
T Consensus       262 -----------------------------~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~  312 (422)
T KOG0264|consen  262 -----------------------------SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTF  312 (422)
T ss_pred             -----------------------------CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceec
Confidence                                         2334456789999999999995 567899999999999999875 457899


Q ss_pred             ccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC--------------eEEEEEeCCCCCEEEEEEcCC
Q 008467          438 REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG--------------KLLYSLNGHREPVYSLAFSPT  503 (564)
Q Consensus       438 ~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~--------------~~~~~~~~h~~~i~~~~~spd  503 (564)
                      .+|...|..+.|+|...        .+|||++.|+.+.|||+..-              ++++.-.||...|..++|+|.
T Consensus       313 e~H~dev~~V~WSPh~e--------tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~  384 (422)
T KOG0264|consen  313 EGHEDEVFQVEWSPHNE--------TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPN  384 (422)
T ss_pred             cCCCcceEEEEeCCCCC--------ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCC
Confidence            99999999999999764        48999999999999998531              345677899999999999999


Q ss_pred             CCE-EEEEeCCCcEEEEeCC
Q 008467          504 GEY-LASGSLDKSMHIWSLK  522 (564)
Q Consensus       504 g~~-lasgs~dg~i~iw~~~  522 (564)
                      ..+ |++++.|+.+.||...
T Consensus       385 ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  385 EPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             CCeEEEEecCCceEEEeecc
Confidence            876 5788999999999875

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=3.7e-27  Score=203.42  Aligned_cols=246  Identities=26%  Similarity=0.504  Sum_probs=193.8

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEECC--C--ceeEeecCCCCCEEEEEeCC--CCCEEEEeeCCCcEEEEECCCc
Q 008467          275 SKDVTTLDWNGEGTLLATGSYDGQARIWSTN--G--DLKCTLSKHKGPIFSLKWNK--KGDYLLTGSCDKTAIVWDVKTE  348 (564)
Q Consensus       275 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~--~--~~~~~~~~h~~~V~~l~~~~--~~~~l~s~s~D~~v~iwd~~~~  348 (564)
                      ...|..+...--|+.|||++.|++|+|+...  +  .+..++.+|.+||+.+.|..  -|..|++++.||.|.||.-..+
T Consensus        11 ~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g   90 (299)
T KOG1332|consen   11 EDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENG   90 (299)
T ss_pred             hhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCC
Confidence            3445555555568999999999999999864  2  46678999999999999976  7899999999999999987666


Q ss_pred             ceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC--CCEEEEEeCCCcEEEE
Q 008467          349 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKIW  426 (564)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~--~~~las~s~dg~i~iw  426 (564)
                      .+.+                                       ...+..|...|++++|-|.  |-+||+++.||.|.|.
T Consensus        91 ~w~k---------------------------------------~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl  131 (299)
T KOG1332|consen   91 RWTK---------------------------------------AYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVL  131 (299)
T ss_pred             chhh---------------------------------------hhhhhhhcccceeecccccccceEEEEeeCCCcEEEE
Confidence            4432                                       2345679999999999885  5679999999999999


Q ss_pred             eCCCC-e--eeeecccccccEEEEEEccCCCC---CC-CCC-CcEEEEEEeCCCeEEEEeCCCCe--EEEEEeCCCCCEE
Q 008467          427 NMKQD-K--YVHDLREHSKEIYTIRWSPTGSG---TN-NPN-QQLILASASFDSTVKLWDVELGK--LLYSLNGHREPVY  496 (564)
Q Consensus       427 d~~~~-~--~~~~~~~~~~~i~~i~~~p~~~~---~~-~~~-~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~h~~~i~  496 (564)
                      +.+.. .  .......|.-.|.+++|.|....   .. .+. .-..|+||+.|..|+||+..+++  .-.+|.+|.+.|.
T Consensus       132 ~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVR  211 (299)
T KOG1332|consen  132 TYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVR  211 (299)
T ss_pred             EEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhh
Confidence            88765 1  12345679899999999997321   11 111 12358999999999999988763  2345889999999


Q ss_pred             EEEEcCCC----CEEEEEeCCCcEEEEeCCC------CeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467          497 SLAFSPTG----EYLASGSLDKSMHIWSLKE------GKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLD  561 (564)
Q Consensus       497 ~~~~spdg----~~lasgs~dg~i~iw~~~~------~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~  561 (564)
                      .++|.|.-    .+||++|.||+|.||....      .++++.|  ...++.++||..|+.||+++.|..|.+|-
T Consensus       212 DVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f--~~~~w~vSWS~sGn~LaVs~GdNkvtlwk  284 (299)
T KOG1332|consen  212 DVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEF--PDVVWRVSWSLSGNILAVSGGDNKVTLWK  284 (299)
T ss_pred             hhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccC--CcceEEEEEeccccEEEEecCCcEEEEEE
Confidence            99999974    5799999999999998762      1234443  35689999999999999999999999884

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.95  E-value=1.2e-25  Score=220.28  Aligned_cols=345  Identities=25%  Similarity=0.381  Sum_probs=254.3

Q ss_pred             ceeEccCCccceEEEEECCCCC---EEEEEECCCcEEEEeCCCCCCCC---------CCCCCCceEEEEEe------ecc
Q 008467          208 DVTILEGHTSEVCACAWSPAGS---LLASGSGDSTARIWTIADGTSNG---------GAQNGPLNVLVLKH------VKG  269 (564)
Q Consensus       208 ~~~~l~~h~~~V~~~~~sp~~~---~lasgs~D~~i~iW~~~~~~~~~---------~~~~~~~~~~~~~~------~~~  269 (564)
                      .+..|.||.+.|..++|+..+.   +|||+|.|..||||.+.-+....         ...+.+.. ..+.+      +..
T Consensus       183 ~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f-~~l~~i~~~is~ea  261 (764)
T KOG1063|consen  183 RVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVF-MILEEIQYRISFEA  261 (764)
T ss_pred             EEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCcee-eeeeeEEEEEehhh
Confidence            3567899999999999998654   89999999999999875332111         01111110 11111      112


Q ss_pred             ccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCc---eeE-----eecCCCCCEEEEEeCCCCCEEEEeeCCCcEE
Q 008467          270 RTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD---LKC-----TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAI  341 (564)
Q Consensus       270 ~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~---~~~-----~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~  341 (564)
                      ...+|...|.++.|+|.+..|++++.|.++.+|..+..   ...     .+.+..+.-++.-|+|+++.+++-+.-|-.+
T Consensus       262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h  341 (764)
T KOG1063|consen  262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH  341 (764)
T ss_pred             hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence            34478899999999999999999999999999986543   222     2334456689999999999999999999999


Q ss_pred             EEEC-CCcceeE--EEeecccCeEEEEcCCCc-eEEEEeCCCeEEEEEcCCCce----eeEecCCCcceEEEEECCCCCE
Q 008467          342 VWDV-KTEEWKQ--QFEFHSGPTLDVDWRNNV-SFATSSTDNMIYVCKIGENRP----IKTFAGHQGEVNCVKWDPTGSL  413 (564)
Q Consensus       342 iwd~-~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~----~~~~~~h~~~i~~v~~~~~~~~  413 (564)
                      +|-. ....|.+  .+..|...+.+++|.+.. .+++.+.|.+-+++-....+.    +..-.-|...++|+++-+....
T Consensus       342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~  421 (764)
T KOG1063|consen  342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQ  421 (764)
T ss_pred             EEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCce
Confidence            9972 2233333  356788899999998654 557888999888876542211    1112347778999999885566


Q ss_pred             EEEEeCCCcEEEEeCCC-------------------------------------------Ce------------------
Q 008467          414 LASCSDDVTAKIWNMKQ-------------------------------------------DK------------------  432 (564)
Q Consensus       414 las~s~dg~i~iwd~~~-------------------------------------------~~------------------  432 (564)
                      +++|.+...+|+|+...                                           +.                  
T Consensus       422 FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~  501 (764)
T KOG1063|consen  422 FVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELT  501 (764)
T ss_pred             eeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhcc
Confidence            78999999999997510                                           00                  


Q ss_pred             ---------------eeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCC-----eEEEEeCCCCeEEEEEeCCC
Q 008467          433 ---------------YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS-----TVKLWDVELGKLLYSLNGHR  492 (564)
Q Consensus       433 ---------------~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~~h~  492 (564)
                                     .++.+.+|.-.|++++.+|++.         ++||++...     .|++|+..+-..+..+.+|.
T Consensus       502 ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn---------liASaCKS~~~ehAvI~lw~t~~W~~~~~L~~Hs  572 (764)
T KOG1063|consen  502 EPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN---------LIASACKSSLKEHAVIRLWNTANWLQVQELEGHS  572 (764)
T ss_pred             CCChHHHHHHhccchhhHHhccCceeEEEEEecCCCC---------EEeehhhhCCccceEEEEEeccchhhhheecccc
Confidence                           0112345667788888888775         788877543     59999999888888999999


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE-EE---EecCCC-EEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467          493 EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV-KT---YTGNGG-IFEVCWNKEGDKIAACFANHTVCVLDF  562 (564)
Q Consensus       493 ~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~-~~---~~~~~~-i~~~~w~~~g~~la~~~~~~~v~v~~~  562 (564)
                      -.|+.++|||||+||++.|.|+++.+|........ ..   ...+.. |.+.+|+|++.++|+|+.|+.|.||..
T Consensus       573 LTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~  647 (764)
T KOG1063|consen  573 LTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEE  647 (764)
T ss_pred             eEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEec
Confidence            99999999999999999999999999998654211 11   223333 689999999999999999999999964

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.95  E-value=5.2e-24  Score=201.54  Aligned_cols=312  Identities=21%  Similarity=0.361  Sum_probs=228.7

Q ss_pred             ccceEEEEECCCCC-EEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEe
Q 008467          216 TSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS  294 (564)
Q Consensus       216 ~~~V~~~~~sp~~~-~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~  294 (564)
                      +..|..+.|+|.+. ++.+. +.|.+..|++..+....            ++-.-.... .+.|+|++|.++|. +++|.
T Consensus       200 ne~v~~a~FHPtd~nliit~-Gk~H~~Fw~~~~~~l~k------------~~~~fek~e-kk~Vl~v~F~engd-viTgD  264 (626)
T KOG2106|consen  200 NEVVFLATFHPTDPNLIITC-GKGHLYFWTLRGGSLVK------------RQGIFEKRE-KKFVLCVTFLENGD-VITGD  264 (626)
T ss_pred             cceEEEEEeccCCCcEEEEe-CCceEEEEEccCCceEE------------Eeecccccc-ceEEEEEEEcCCCC-EEeec
Confidence            35678999999764 55555 56899999987653211            111111112 27799999999997 56999


Q ss_pred             CCCeEEEEECCCce-eEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeE-EEeecccCeEEEEcCCCceE
Q 008467          295 YDGQARIWSTNGDL-KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ-QFEFHSGPTLDVDWRNNVSF  372 (564)
Q Consensus       295 ~dg~i~vw~~~~~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  372 (564)
                      .+|.|.||+..+.. ......|.+.|++|+...+|. |+||+.|+.|..||-.-.+... .+.-..+++..+.-.... +
T Consensus       265 S~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~d-i  342 (626)
T KOG2106|consen  265 SGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGD-I  342 (626)
T ss_pred             CCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecCccceEEeccccccccccccCchhcCCeeEEecCCCc-E
Confidence            99999999987543 333449999999999999986 5569999999999932222111 122233445444433223 6


Q ss_pred             EEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccC
Q 008467          373 ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT  452 (564)
Q Consensus       373 ~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~  452 (564)
                      ..+...+.|..-.+..+-.+ +..||......++.+|+..+++||+.|+.+++|+  ..++..+. .-..++.++.|+|.
T Consensus       343 ~vGTtrN~iL~Gt~~~~f~~-~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~-~~~d~~~~~~fhps  418 (626)
T KOG2106|consen  343 LVGTTRNFILQGTLENGFTL-TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTK-IIEDPAECADFHPS  418 (626)
T ss_pred             EEeeccceEEEeeecCCceE-EEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEE-EecCceeEeeccCc
Confidence            66666666666555544333 4458999999999999999999999999999999  33333322 23467789999997


Q ss_pred             CCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-EE---E
Q 008467          453 GSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK-IV---K  528 (564)
Q Consensus       453 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~-~~---~  528 (564)
                      |          .+|.|...|...+.|.++...+..-.. ..++++++|+|+|.+||.|+.|+.|+||.+.... ..   .
T Consensus       419 g----------~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~  487 (626)
T KOG2106|consen  419 G----------VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVG  487 (626)
T ss_pred             c----------eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEee
Confidence            7          589999999999999998655544444 8899999999999999999999999999986543 22   2


Q ss_pred             EEecCCCEEEEEEccCCCEEEEEEcCCcEEEE
Q 008467          529 TYTGNGGIFEVCWNKEGDKIAACFANHTVCVL  560 (564)
Q Consensus       529 ~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~  560 (564)
                      ...+ ..|+.+.|++|+++|.+-+.|-.+-.|
T Consensus       488 k~~g-s~ithLDwS~Ds~~~~~~S~d~eiLyW  518 (626)
T KOG2106|consen  488 KCSG-SPITHLDWSSDSQFLVSNSGDYEILYW  518 (626)
T ss_pred             eecC-ceeEEeeecCCCceEEeccCceEEEEE
Confidence            2333 679999999999999999888777777

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=2e-25  Score=218.83  Aligned_cols=328  Identities=21%  Similarity=0.361  Sum_probs=247.5

Q ss_pred             eEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCC---CCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeC
Q 008467          219 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQ---NGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY  295 (564)
Q Consensus       219 V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~  295 (564)
                      .-+|.|+|....|...-.|..++|||+.+-...+...   .+...++.+....  .+.+...--|+   |.+ .|+|++.
T Consensus       327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p--~nv~~~~~acl---p~~-cF~TCSs  400 (1080)
T KOG1408|consen  327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLP--CNVHSPTAACL---PRG-CFTTCSS  400 (1080)
T ss_pred             eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeecccc--ccccCcccccC---Ccc-ceeEecC
Confidence            4578899998888888899999999997643322111   0111111111110  01111111111   223 3889999


Q ss_pred             CCeEEEEECCC----ceeE--ee--------------------------------cCCCCCEEEEEeCCCCCEEEEeeCC
Q 008467          296 DGQARIWSTNG----DLKC--TL--------------------------------SKHKGPIFSLKWNKKGDYLLTGSCD  337 (564)
Q Consensus       296 dg~i~vw~~~~----~~~~--~~--------------------------------~~h~~~V~~l~~~~~~~~l~s~s~D  337 (564)
                      ||+||+|++.+    ....  .+                                -.....+.+++.+|+|++|++|..-
T Consensus       401 D~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~  480 (1080)
T KOG1408|consen  401 DGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRG  480 (1080)
T ss_pred             CCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCcc
Confidence            99999999764    2100  00                                0123468999999999999999999


Q ss_pred             CcEEEEECCCcceeEEEeecccCeEEEEcCC----CceEEEEeCCCeEEEEEcCCC-ceeeEecCCCcceEEEEECCCC-
Q 008467          338 KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN----NVSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTG-  411 (564)
Q Consensus       338 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~i~~v~~~~~~-  411 (564)
                      |+++||++..-+....++.|...++++.+..    ...+++++.|..|+++|+..+ .+++++.+|...|+++.|-..| 
T Consensus       481 GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gl  560 (1080)
T KOG1408|consen  481 GNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGL  560 (1080)
T ss_pred             CceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCC
Confidence            9999999999888888999999999998864    356889999999999999765 4678899999999999998777 


Q ss_pred             -CEEEEEeCCCcEEEEeCCC-Ceeeeeccc-----ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE
Q 008467          412 -SLLASCSDDVTAKIWNMKQ-DKYVHDLRE-----HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL  484 (564)
Q Consensus       412 -~~las~s~dg~i~iwd~~~-~~~~~~~~~-----~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~  484 (564)
                       ..+++|+.|..|.+ +... ..-...|..     ....++.++..|...         ++++++.|..|+|||+.+|+.
T Consensus       561 n~~MiscGADksimF-r~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k---------~v~t~cQDrnirif~i~sgKq  630 (1080)
T KOG1408|consen  561 NRKMISCGADKSIMF-RVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSK---------LVVTVCQDRNIRIFDIESGKQ  630 (1080)
T ss_pred             ceEEEeccCchhhhe-ehhccccCceeccccccccccceEEEeeeCCCcc---------eEEEEecccceEEEeccccce
Confidence             56889999987653 3322 111111111     234678888877653         788999999999999999999


Q ss_pred             EEEEeC---CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCC-CEEEEEEccCCCEEEEEEcCCcEEEE
Q 008467          485 LYSLNG---HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVL  560 (564)
Q Consensus       485 ~~~~~~---h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~-~i~~~~w~~~g~~la~~~~~~~v~v~  560 (564)
                      +..+++   |.+..-.+...|.|-|||+...|+++.++|.-+|+++....+++ .|+.+-|.+|=++|...++||.|.||
T Consensus       631 ~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW  710 (1080)
T KOG1408|consen  631 VKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVW  710 (1080)
T ss_pred             eeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEE
Confidence            999875   55667788999999999999999999999999999999888776 47899999999999999999999999


Q ss_pred             Ee
Q 008467          561 DF  562 (564)
Q Consensus       561 ~~  562 (564)
                      -+
T Consensus       711 ~l  712 (1080)
T KOG1408|consen  711 KL  712 (1080)
T ss_pred             EC
Confidence            75

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.95  E-value=6.6e-26  Score=202.00  Aligned_cols=280  Identities=21%  Similarity=0.366  Sum_probs=225.1

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC-------------------ceeEeecCCCCCEEEEEeCCCCCEEEEe
Q 008467          274 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-------------------DLKCTLSKHKGPIFSLKWNKKGDYLLTG  334 (564)
Q Consensus       274 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~-------------------~~~~~~~~h~~~V~~l~~~~~~~~l~s~  334 (564)
                      |..++.+.+||+||.++++|+.|..|+|.|++.                   .+..++-.|..+|..+.|+|....|++|
T Consensus       111 HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~  190 (430)
T KOG0640|consen  111 HKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISG  190 (430)
T ss_pred             cccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEec
Confidence            456788999999999999999999999998641                   1345677899999999999999999999


Q ss_pred             eCCCcEEEEECCCcceeEEEe--ecccCeEEEEcCCCceEEEEeCC-CeEEEEEcCCCceeeE---ecCCCcceEEEEEC
Q 008467          335 SCDKTAIVWDVKTEEWKQQFE--FHSGPTLDVDWRNNVSFATSSTD-NMIYVCKIGENRPIKT---FAGHQGEVNCVKWD  408 (564)
Q Consensus       335 s~D~~v~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d-~~i~~~~~~~~~~~~~---~~~h~~~i~~v~~~  408 (564)
                      +.|++|+++|......++.+.  ....++.++.+++...|+..+.| ..+++|++.+-++...   -.+|.+.|+++.++
T Consensus       191 srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys  270 (430)
T KOG0640|consen  191 SRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYS  270 (430)
T ss_pred             cCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEec
Confidence            999999999986544443332  23457888999887777655554 5789999987654332   24789999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCeeeeecc-ccc-ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE
Q 008467          409 PTGSLLASCSDDVTAKIWNMKQDKYVHDLR-EHS-KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY  486 (564)
Q Consensus       409 ~~~~~las~s~dg~i~iwd~~~~~~~~~~~-~~~-~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~  486 (564)
                      +.+++.+|+|.||.|+|||--+.+|+.++. +|. ..|.+..|..++.         ++++.++|..|++|.+.+++++.
T Consensus       271 ~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~k---------yiLsSG~DS~vkLWEi~t~R~l~  341 (430)
T KOG0640|consen  271 STGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGK---------YILSSGKDSTVKLWEISTGRMLK  341 (430)
T ss_pred             CCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCe---------EEeecCCcceeeeeeecCCceEE
Confidence            999999999999999999999999988875 454 4688889988775         78899999999999999999998


Q ss_pred             EEeCCC-----CCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEEEEE--ecCCCEEEEEEccCCCEEEEEEcCCcEE
Q 008467          487 SLNGHR-----EPVYSLAFSPTGEYLASGS-LDKSMHIWSLKEGKIVKTY--TGNGGIFEVCWNKEGDKIAACFANHTVC  558 (564)
Q Consensus       487 ~~~~h~-----~~i~~~~~spdg~~lasgs-~dg~i~iw~~~~~~~~~~~--~~~~~i~~~~w~~~g~~la~~~~~~~v~  558 (564)
                      +..|-.     .--+...|+....|+..-. ..+.+.-||.+++..+..+  .+++.+..+.-+|.+--+.+|+.|-+.+
T Consensus       342 ~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raR  421 (430)
T KOG0640|consen  342 EYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRAR  421 (430)
T ss_pred             EEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceee
Confidence            887642     1234566887777776543 3467999999988655443  4566788899999999999999999999


Q ss_pred             EEEe
Q 008467          559 VLDF  562 (564)
Q Consensus       559 v~~~  562 (564)
                      +|-=
T Consensus       422 FWyr  425 (430)
T KOG0640|consen  422 FWYR  425 (430)
T ss_pred             eeee
Confidence            8853

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.95  E-value=4.5e-26  Score=215.10  Aligned_cols=284  Identities=19%  Similarity=0.376  Sum_probs=233.0

Q ss_pred             CCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEE
Q 008467          214 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG  293 (564)
Q Consensus       214 ~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg  293 (564)
                      .|-.-|.++..|...++++||+ .|.|+|||+......     .|+..+..       .....-|.++...|||+.|++|
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k-----~PvsqLdc-------l~rdnyiRSckL~pdgrtLivG  483 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNK-----SPVSQLDC-------LNRDNYIRSCKLLPDGRTLIVG  483 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCC-----Cccccccc-------cCcccceeeeEecCCCceEEec
Confidence            5777788899999999999986 588999999653211     11111111       1123568899999999999999


Q ss_pred             eCCCeEEEEECCC---ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCc
Q 008467          294 SYDGQARIWSTNG---DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV  370 (564)
Q Consensus       294 ~~dg~i~vw~~~~---~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (564)
                      ++-.++.|||+..   .++..+....-..++|+.+||.+..+++..||.|.|||+....                     
T Consensus       484 GeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~---------------------  542 (705)
T KOG0639|consen  484 GEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT---------------------  542 (705)
T ss_pred             cccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce---------------------
Confidence            9999999999753   3344455444567889999999999999999999999997643                     


Q ss_pred             eEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEc
Q 008467          371 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWS  450 (564)
Q Consensus       371 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~  450 (564)
                                          .++.|.||...+.||.+++||..|-||+-|.++|.||+++++.+... .....|.++.++
T Consensus       543 --------------------~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqh-dF~SQIfSLg~c  601 (705)
T KOG0639|consen  543 --------------------LVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH-DFSSQIFSLGYC  601 (705)
T ss_pred             --------------------eeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhh-hhhhhheecccC
Confidence                                35678899999999999999999999999999999999988765432 234679999999


Q ss_pred             cCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q 008467          451 PTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY  530 (564)
Q Consensus       451 p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~  530 (564)
                      |.+.         +|+.|-.++.+.|-... +...+.+.-|..-|.++.|++.|+|+++.+.|..+..|...-|..+...
T Consensus       602 P~~d---------WlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqs  671 (705)
T KOG0639|consen  602 PTGD---------WLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS  671 (705)
T ss_pred             CCcc---------ceeeecccCcEEEEecC-CccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeec
Confidence            9876         78999999999888775 4556777789999999999999999999999999999999999877777


Q ss_pred             ecCCCEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467          531 TGNGGIFEVCWNKEGDKIAACFANHTVCVLDF  562 (564)
Q Consensus       531 ~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~  562 (564)
                      .....|.+...+.|.+++++|++++.-.||.+
T Consensus       672 kE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  672 KESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             cccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            77788999999999999999999988888865

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.94  E-value=6.2e-26  Score=212.76  Aligned_cols=248  Identities=27%  Similarity=0.513  Sum_probs=198.7

Q ss_pred             cCCCCeEEEEECCC-CCEEEEEeCCCeEEEEECCC-----------ceeEeecCCCCCEEEEEeCCCCC-EEEEeeCCCc
Q 008467          273 EKSKDVTTLDWNGE-GTLLATGSYDGQARIWSTNG-----------DLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKT  339 (564)
Q Consensus       273 ~~~~~V~~l~~s~~-g~~l~sg~~dg~i~vw~~~~-----------~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~  339 (564)
                      .|.+.|..+..-|. ..++|+++..+.+.|||...           ....++.+|...-++|.|++... +|++++.|++
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~  201 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT  201 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence            35667888888885 46778888999999999532           12237889999889999998654 6899999999


Q ss_pred             EEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCC-CEEEEEe
Q 008467          340 AIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCS  418 (564)
Q Consensus       340 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~-~~las~s  418 (564)
                      |++||+......       .                           ....+...|.+|...|..++|++-. .+|++++
T Consensus       202 i~lwdi~~~~~~-------~---------------------------~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~  247 (422)
T KOG0264|consen  202 ICLWDINAESKE-------D---------------------------KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVG  247 (422)
T ss_pred             EEEEeccccccC-------C---------------------------ccccceEEeecCCcceehhhccccchhhheeec
Confidence            999998753211       0                           0123566789999999999999854 6789999


Q ss_pred             CCCcEEEEeCC--CCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEEeCCCCCE
Q 008467          419 DDVTAKIWNMK--QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPV  495 (564)
Q Consensus       419 ~dg~i~iwd~~--~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i  495 (564)
                      +|+.+.|||++  +.++.+...+|.++|.|++|+|.+.        .+||+||.|++|++||+|+- ++++++.+|...|
T Consensus       248 dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~--------~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev  319 (422)
T KOG0264|consen  248 DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNE--------FILATGSADKTVALWDLRNLNKPLHTFEGHEDEV  319 (422)
T ss_pred             CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCC--------ceEEeccCCCcEEEeechhcccCceeccCCCcce
Confidence            99999999999  5667778889999999999999763        58999999999999999974 5688999999999


Q ss_pred             EEEEEcCCC-CEEEEEeCCCcEEEEeCCCCe--------------EEEEEecC-CCEEEEEEccCCC-EEEEEEcCCcEE
Q 008467          496 YSLAFSPTG-EYLASGSLDKSMHIWSLKEGK--------------IVKTYTGN-GGIFEVCWNKEGD-KIAACFANHTVC  558 (564)
Q Consensus       496 ~~~~~spdg-~~lasgs~dg~i~iw~~~~~~--------------~~~~~~~~-~~i~~~~w~~~g~-~la~~~~~~~v~  558 (564)
                      .+|.|||.. ..||+++.|+++.|||+..-.              ++-...|+ ..|.+++|+|.-- .|++...|+.+.
T Consensus       320 ~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~Lq  399 (422)
T KOG0264|consen  320 FQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQ  399 (422)
T ss_pred             EEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEE
Confidence            999999975 788999999999999986432              12222232 3589999999876 556667788999


Q ss_pred             EEEe
Q 008467          559 VLDF  562 (564)
Q Consensus       559 v~~~  562 (564)
                      ||..
T Consensus       400 IW~~  403 (422)
T KOG0264|consen  400 IWQM  403 (422)
T ss_pred             Eeec
Confidence            9964

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.94  E-value=5.1e-26  Score=215.60  Aligned_cols=252  Identities=23%  Similarity=0.405  Sum_probs=189.1

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCce------eEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECC
Q 008467          273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL------KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK  346 (564)
Q Consensus       273 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~------~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~  346 (564)
                      .+++.|+++++.|.|-.|++|+.|-.|++||..|.-      ..........|.+++|++.|..|++.+.....+|+|-.
T Consensus       165 hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRd  244 (641)
T KOG0772|consen  165 HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRD  244 (641)
T ss_pred             CCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccC
Confidence            356789999999999999999999999999987631      12233455689999999999999999999999999965


Q ss_pred             CcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCC-EEEEEeCCCcEEE
Q 008467          347 TEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKI  425 (564)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~-~las~s~dg~i~i  425 (564)
                      ..++.....                     +|.+|  -+      +..-+||...++|.+|+|+.+ .++||+.||++||
T Consensus       245 G~~~~e~~K---------------------GDQYI--~D------m~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRi  295 (641)
T KOG0772|consen  245 GFEIVEFSK---------------------GDQYI--RD------MYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRI  295 (641)
T ss_pred             Cceeeeeec---------------------cchhh--hh------hhccCCceeeeeccccccCcccceEEecCCCcEEE
Confidence            544332211                     11111  11      123468999999999999864 5889999999999


Q ss_pred             EeCCCCee-eeecc-----cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE---EEEEeCCCC--C
Q 008467          426 WNMKQDKY-VHDLR-----EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL---LYSLNGHRE--P  494 (564)
Q Consensus       426 wd~~~~~~-~~~~~-----~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~h~~--~  494 (564)
                      ||+...+. ...|+     +..-++++.+|+|++.         ++|+|..||.|.+|+..+...   .+.-.+|..  .
T Consensus       296 Wdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~---------~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~  366 (641)
T KOG0772|consen  296 WDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK---------LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQD  366 (641)
T ss_pred             EecCCchhheeEEeeccCCCcccCceeeecCCCcc---------hhhhcccCCceeeeecCCcccccceEeeeccCCCCc
Confidence            99875432 22222     1223578899999986         689999999999999764321   233456776  8


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-EEEEEec---CCCEEEEEEccCCCEEEEEEc------CCcEEEEEe
Q 008467          495 VYSLAFSPTGEYLASGSLDKSMHIWSLKEGK-IVKTYTG---NGGIFEVCWNKEGDKIAACFA------NHTVCVLDF  562 (564)
Q Consensus       495 i~~~~~spdg~~lasgs~dg~i~iw~~~~~~-~~~~~~~---~~~i~~~~w~~~g~~la~~~~------~~~v~v~~~  562 (564)
                      |+||+||+||++|++-|.|+++++||++.-+ .+..+.+   .-.-+++||||+.+.|++|..      -|.+++||-
T Consensus       367 Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~  444 (641)
T KOG0772|consen  367 ITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDR  444 (641)
T ss_pred             eeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEec
Confidence            9999999999999999999999999998753 4444443   223468999999999998854      245777763

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.1e-24  Score=220.08  Aligned_cols=270  Identities=23%  Similarity=0.385  Sum_probs=217.4

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCc--eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCccee
Q 008467          274 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD--LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK  351 (564)
Q Consensus       274 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~  351 (564)
                      |...-+.++|.|+|++|.+++.||.|++|+....  ...++..+...|.+++-.  +++|++|+.+++|.+|....++..
T Consensus        12 ht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~   89 (933)
T KOG1274|consen   12 HTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEED   89 (933)
T ss_pred             ccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCcc
Confidence            3456899999999999999999999999986543  223344488888888754  459999999999999998877655


Q ss_pred             EEEeecccCeEEEEcCCC-ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 008467          352 QQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ  430 (564)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~  430 (564)
                      ..+..-.-++.++.+..+ ..++.++.|-.|.+.+.......+.+++|.++|.++.|+|.+++||+.+-||.|+||++.+
T Consensus        90 ~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~  169 (933)
T KOG1274|consen   90 TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQD  169 (933)
T ss_pred             ceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEccc
Confidence            444444556677777544 5678888999999999999889999999999999999999999999999999999999998


Q ss_pred             Ceeeeecccc--------cccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeC--CCCCEEEEEE
Q 008467          431 DKYVHDLREH--------SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG--HREPVYSLAF  500 (564)
Q Consensus       431 ~~~~~~~~~~--------~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--h~~~i~~~~~  500 (564)
                      +.+.+++..-        ...+..++|+|.+.         .|+..+.|++|++|+.......+.+..  +...+..+.|
T Consensus       170 ~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g---------~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~w  240 (933)
T KOG1274|consen  170 GILSKTLTGVDKDNEFILSRICTRLAWHPKGG---------TLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQW  240 (933)
T ss_pred             chhhhhcccCCccccccccceeeeeeecCCCC---------eEEeeccCCeEEEEccCCceeheeecccccccceEEEEE
Confidence            8776555421        34567789999864         467777899999999999888887753  4445899999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcE
Q 008467          501 SPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTV  557 (564)
Q Consensus       501 spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v  557 (564)
                      ||.|+|||+++.||.|.|||+++...   ......|++++|.|+++.+-.-...|..
T Consensus       241 sPnG~YiAAs~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~p~~n~it~~~~~g~~  294 (933)
T KOG1274|consen  241 SPNGKYIAASTLDGQILVWNVDTHER---HEFKRAVCCEAWKPNANAITLITALGTL  294 (933)
T ss_pred             cCCCcEEeeeccCCcEEEEecccchh---ccccceeEEEecCCCCCeeEEEeecccc
Confidence            99999999999999999999997322   2223469999999999877655555443

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.94  E-value=1.3e-23  Score=198.84  Aligned_cols=325  Identities=19%  Similarity=0.293  Sum_probs=246.4

Q ss_pred             ceeEccCCccceEEEEECCCCCEEEEEECCC--------cEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeE
Q 008467          208 DVTILEGHTSEVCACAWSPAGSLLASGSGDS--------TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVT  279 (564)
Q Consensus       208 ~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~--------~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~  279 (564)
                      ..+.+.||+..|.|++.||+.-.+|+|-.-|        .+||||..+-.          ...++.       .-...|+
T Consensus        96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~----------TL~V~g-------~f~~GV~  158 (626)
T KOG2106|consen   96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLS----------TLHVIG-------FFDRGVT  158 (626)
T ss_pred             hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccce----------eeeeec-------cccccce
Confidence            3456679999999999999999999886655        48999843211          111221       2246799


Q ss_pred             EEEECC--CCCEEEEE--eCCCeEEEEECCCc-eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEE
Q 008467          280 TLDWNG--EGTLLATG--SYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF  354 (564)
Q Consensus       280 ~l~~s~--~g~~l~sg--~~dg~i~vw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  354 (564)
                      |++||+  .|.++..-  +.+..+.||+-..+ ........+..|....|+|.+..++.....+.+.+|+++++.+.+..
T Consensus       159 ~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~  238 (626)
T KOG2106|consen  159 CVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQ  238 (626)
T ss_pred             eeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEe
Confidence            999998  34555443  33457889986533 22234445677899999998877776667789999999988776543


Q ss_pred             ---eec-ccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 008467          355 ---EFH-SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ  430 (564)
Q Consensus       355 ---~~~-~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~  430 (564)
                         +.+ ..-++++.|..+...+++..+|.|.+|+.+..+..+....|.+.|-+++.-.+|.+| ||+.|..|..||-.-
T Consensus       239 ~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y  317 (626)
T KOG2106|consen  239 GIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNY  317 (626)
T ss_pred             eccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe-ecCccceEEeccccc
Confidence               222 245889999999999999999999999998887776666999999999999999876 599999999998321


Q ss_pred             Ce-----------eeee-----------------------------cccccccEEEEEEccCCCCCCCCCCcEEEEEEeC
Q 008467          431 DK-----------YVHD-----------------------------LREHSKEIYTIRWSPTGSGTNNPNQQLILASASF  470 (564)
Q Consensus       431 ~~-----------~~~~-----------------------------~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~  470 (564)
                      .+           .+++                             ..+|......++-.|..         ..+++++.
T Consensus       318 ~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~---------~q~~T~gq  388 (626)
T KOG2106|consen  318 RKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK---------NQLLTCGQ  388 (626)
T ss_pred             cccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh---------hheeeccC
Confidence            11           0111                             11233333444444432         25889999


Q ss_pred             CCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEE
Q 008467          471 DSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAA  550 (564)
Q Consensus       471 dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~  550 (564)
                      |+.+++|+  ..++.++.. -..++.++.|+|.| .+|.|+..|...+.|.++..++..-..+..+..+.++|+|.+||+
T Consensus       389 dk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAv  464 (626)
T KOG2106|consen  389 DKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAV  464 (626)
T ss_pred             cceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEE
Confidence            99999999  456666654 35689999999999 999999999999999999888887777888999999999999999


Q ss_pred             EEcCCcEEEEEee
Q 008467          551 CFANHTVCVLDFR  563 (564)
Q Consensus       551 ~~~~~~v~v~~~~  563 (564)
                      |+.|+.|.||-+.
T Consensus       465 gs~d~~iyiy~Vs  477 (626)
T KOG2106|consen  465 GSHDNHIYIYRVS  477 (626)
T ss_pred             ecCCCeEEEEEEC
Confidence            9999999998663

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.94  E-value=4.2e-25  Score=195.60  Aligned_cols=298  Identities=20%  Similarity=0.371  Sum_probs=227.5

Q ss_pred             eEccCCccceEEEEECCC-CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEe----eccccccCCCCeEEEEEC
Q 008467          210 TILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKH----VKGRTNEKSKDVTTLDWN  284 (564)
Q Consensus       210 ~~l~~h~~~V~~~~~sp~-~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~V~~l~~s  284 (564)
                      .+.+.|.+.|+++...|. |+++++|+.||.|.+||+++.......      .+..++    .+.+.+.|...|+++.|-
T Consensus        37 d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s------~li~k~~c~v~~~h~~~Hky~iss~~Wy  110 (397)
T KOG4283|consen   37 DFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEAS------GLIAKHKCIVAKQHENGHKYAISSAIWY  110 (397)
T ss_pred             ceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhc------cceeheeeeccccCCccceeeeeeeEEe
Confidence            345679999999999995 899999999999999999865421110      011111    234556777889999999


Q ss_pred             C-CCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCC---CEEEEeeCCCcEEEEECCCcceeEEEeecccC
Q 008467          285 G-EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKG---DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP  360 (564)
Q Consensus       285 ~-~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~---~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~  360 (564)
                      | |.-++.+++.|.+++|||++.-....--...+.|++-+|+|-.   ..+++|..|-.|++-|+.+|.+...+..|.+.
T Consensus       111 P~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~  190 (397)
T KOG4283|consen  111 PIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDG  190 (397)
T ss_pred             eecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCc
Confidence            9 6668889999999999999876555444567889999999854   35677788889999999999999999999999


Q ss_pred             eEEEEcCCCc--eEEEEeCCCeEEEEEcCCC-cee--------------eEecCCCcceEEEEECCCCCEEEEEeCCCcE
Q 008467          361 TLDVDWRNNV--SFATSSTDNMIYVCKIGEN-RPI--------------KTFAGHQGEVNCVKWDPTGSLLASCSDDVTA  423 (564)
Q Consensus       361 ~~~~~~~~~~--~~~~~~~d~~i~~~~~~~~-~~~--------------~~~~~h~~~i~~v~~~~~~~~las~s~dg~i  423 (564)
                      ++.+.|.+..  .+++++.|+.|++||++.. .+.              ++-..|.+.|+.++|..++.++++++.|..+
T Consensus       191 vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~  270 (397)
T KOG4283|consen  191 VLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRI  270 (397)
T ss_pred             eEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccce
Confidence            9999997654  5678999999999998643 111              2234678899999999999999999999999


Q ss_pred             EEEeCCCCeee-eecc--cccccEEEEEEcc-CCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEE
Q 008467          424 KIWNMKQDKYV-HDLR--EHSKEIYTIRWSP-TGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLA  499 (564)
Q Consensus       424 ~iwd~~~~~~~-~~~~--~~~~~i~~i~~~p-~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~  499 (564)
                      ++|+..+++.. ..+-  -|.+. ..+++.- .+.       .-.++---.++.+.++++-.+..+..+..|...|.+.+
T Consensus       271 r~wn~~~G~ntl~~~g~~~~n~~-~~~~~~~~~~~-------s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~  342 (397)
T KOG4283|consen  271 RVWNMESGRNTLREFGPIIHNQT-TSFAVHIQSMD-------SDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAA  342 (397)
T ss_pred             EEeecccCccccccccccccccc-ccceEEEeecc-------cceEEEEecCCeEEEEEccCceEEEeeecccceeeEEe
Confidence            99998776532 1110  01111 1111110 000       01233333458999999999999999999999999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEeC
Q 008467          500 FSPTGEYLASGSLDKSMHIWSL  521 (564)
Q Consensus       500 ~spdg~~lasgs~dg~i~iw~~  521 (564)
                      |-|+=+-+.+|+.|+.|..|..
T Consensus       343 ~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  343 YRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             ecCchhhhhccccCCccccccc
Confidence            9999999999999999999987

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=8.8e-26  Score=227.09  Aligned_cols=242  Identities=20%  Similarity=0.347  Sum_probs=179.1

Q ss_pred             eec-CCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCe----------EEEEcCC------CceEE
Q 008467          311 TLS-KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT----------LDVDWRN------NVSFA  373 (564)
Q Consensus       311 ~~~-~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~----------~~~~~~~------~~~~~  373 (564)
                      .+. .|.++|++++|+++|+||++|+.|+.|+||.+...+....-......+          ..+....      ....-
T Consensus       261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~  340 (712)
T KOG0283|consen  261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR  340 (712)
T ss_pred             ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence            345 899999999999999999999999999999876533211000000000          0000000      00000


Q ss_pred             EEeCCCeEEEEE---cCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEc
Q 008467          374 TSSTDNMIYVCK---IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWS  450 (564)
Q Consensus       374 ~~~~d~~i~~~~---~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~  450 (564)
                      .+.....+.+-.   .-..+|+..|.||.+.|..+.|+.+ .+|+|+|.|.+||+|++....++..|. |..-|+||+|.
T Consensus       341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFn  418 (712)
T KOG0283|consen  341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFN  418 (712)
T ss_pred             cccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEec
Confidence            001111111100   1135788999999999999999964 678899999999999999999998874 99999999999


Q ss_pred             cCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q 008467          451 PTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY  530 (564)
Q Consensus       451 p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~  530 (564)
                      |...        .+++|||.||.||||++...+.+.-.. -..-|++++|+|||++.+.|+.+|.+++|++...++...+
T Consensus       419 PvDD--------ryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~  489 (712)
T KOG0283|consen  419 PVDD--------RYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDF  489 (712)
T ss_pred             ccCC--------CcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEee
Confidence            8653        489999999999999998777664444 3478999999999999999999999999999988877665


Q ss_pred             ec---------CCCEEEEEEccCC-CEEEEEEcCCcEEEEEee
Q 008467          531 TG---------NGGIFEVCWNKEG-DKIAACFANHTVCVLDFR  563 (564)
Q Consensus       531 ~~---------~~~i~~~~w~~~g-~~la~~~~~~~v~v~~~~  563 (564)
                      .-         +..|+.+.+.|.. +.|.+.+.|..|+|||.|
T Consensus       490 ~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~  532 (712)
T KOG0283|consen  490 HIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGR  532 (712)
T ss_pred             eEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEecc
Confidence            31         2369999999754 568888899999999984

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.6e-24  Score=193.35  Aligned_cols=279  Identities=23%  Similarity=0.392  Sum_probs=202.1

Q ss_pred             EccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC--CCC
Q 008467          211 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--EGT  288 (564)
Q Consensus       211 ~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~--~g~  288 (564)
                      +-.+|.+-|+++.|.+-|+.+|||+.|++++|||........             .+...-..|.+.|..+.|-+  =|+
T Consensus         8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W-------------~~Ts~Wrah~~Si~rV~WAhPEfGq   74 (361)
T KOG2445|consen    8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTW-------------SCTSSWRAHDGSIWRVVWAHPEFGQ   74 (361)
T ss_pred             cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCce-------------EEeeeEEecCCcEEEEEecCccccc
Confidence            345799999999999999999999999999999975433211             11111223567899999976  489


Q ss_pred             EEEEEeCCCeEEEEECC-------C---ceeEeecCCCCCEEEEEeCCC--CCEEEEeeCCCcEEEEECCCcceeEEEee
Q 008467          289 LLATGSYDGQARIWSTN-------G---DLKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEEWKQQFEF  356 (564)
Q Consensus       289 ~l~sg~~dg~i~vw~~~-------~---~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~  356 (564)
                      .+|++++|++++||...       +   ...+++....+.|+.++|.|.  |-.|++++.||++|||+...---..    
T Consensus        75 vvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs----  150 (361)
T KOG2445|consen   75 VVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLS----  150 (361)
T ss_pred             eEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccc----
Confidence            99999999999999752       1   133467778899999999985  5678999999999999864321111    


Q ss_pred             cccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCc--eeeEecCCCcceEEEEECCC---CCEEEEEeCC-----CcEEEE
Q 008467          357 HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR--PIKTFAGHQGEVNCVKWDPT---GSLLASCSDD-----VTAKIW  426 (564)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~--~~~~~~~h~~~i~~v~~~~~---~~~las~s~d-----g~i~iw  426 (564)
                                                .|.+....  .+.....+.....|+.|+|.   ..+||.|+++     +.++||
T Consensus       151 --------------------------~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iy  204 (361)
T KOG2445|consen  151 --------------------------QWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIY  204 (361)
T ss_pred             --------------------------cchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEE
Confidence                                      12111100  01112234556779999974   3678888876     478888


Q ss_pred             eCCCC----eeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC--------------------
Q 008467          427 NMKQD----KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG--------------------  482 (564)
Q Consensus       427 d~~~~----~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~--------------------  482 (564)
                      .....    ..+.++..|..+|+.|+|.|.-..     ...+||+++.|| |+||++...                    
T Consensus       205 e~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr-----~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v  278 (361)
T KOG2445|consen  205 EYNENGRKWLKVAELPDHTDPIRDISWAPNIGR-----SYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPV  278 (361)
T ss_pred             EecCCcceeeeehhcCCCCCcceeeeeccccCC-----ceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccce
Confidence            76433    235677899999999999997432     235899999999 999998631                    


Q ss_pred             eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC---CeEEEEEecCCCEEE
Q 008467          483 KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE---GKIVKTYTGNGGIFE  538 (564)
Q Consensus       483 ~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~---~~~~~~~~~~~~i~~  538 (564)
                      +.+..+.+|...|..+.|+-.|..|++.|.||.|++|...-   .++...+...+.+..
T Consensus       279 ~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~e~~~~~  337 (361)
T KOG2445|consen  279 EKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKAEGSVTK  337 (361)
T ss_pred             EEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEeccCCCCC
Confidence            23455788999999999999999999999999999998642   234444444443333

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.94  E-value=1.8e-25  Score=215.49  Aligned_cols=291  Identities=24%  Similarity=0.376  Sum_probs=232.6

Q ss_pred             eeecCCceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEE
Q 008467          202 FEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTL  281 (564)
Q Consensus       202 ~~~~~~~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l  281 (564)
                      ..+|.....+++||++.|.|++..|.|.+||+|+.||++|||.+.+|.+..             ++.     -...|.|+
T Consensus       386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr-------------~~~-----~d~~I~~v  447 (733)
T KOG0650|consen  386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVR-------------TVQ-----FDSEIRSV  447 (733)
T ss_pred             CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEE-------------EEe-----ecceeEEE
Confidence            346677778899999999999999999999999999999999999886532             211     12469999


Q ss_pred             EECCCCC--EEEEEeCCC--------------------------------eEEEEECCC-----ceeEeecCCCCCEEEE
Q 008467          282 DWNGEGT--LLATGSYDG--------------------------------QARIWSTNG-----DLKCTLSKHKGPIFSL  322 (564)
Q Consensus       282 ~~s~~g~--~l~sg~~dg--------------------------------~i~vw~~~~-----~~~~~~~~h~~~V~~l  322 (564)
                      +|+|.+.  .||++....                                .+..|....     .-++....|..+|..+
T Consensus       448 aw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~v  527 (733)
T KOG0650|consen  448 AWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQV  527 (733)
T ss_pred             EecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCcccee
Confidence            9999764  344443322                                223343210     0123445688999999


Q ss_pred             EeCCCCCEEEEeeCC---CcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCC
Q 008467          323 KWNKKGDYLLTGSCD---KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ  399 (564)
Q Consensus       323 ~~~~~~~~l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~  399 (564)
                      .|+..|.||++...+   ..|.|+++........|....+.+..+.|++...+....+...|++|++.....++.+....
T Consensus       528 tWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~  607 (733)
T KOG0650|consen  528 TWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGS  607 (733)
T ss_pred             eeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCC
Confidence            999999999988765   57999999887777777778888999999988777777788899999998877777777777


Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEeCCC-CeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEe
Q 008467          400 GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ-DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWD  478 (564)
Q Consensus       400 ~~i~~v~~~~~~~~las~s~dg~i~iwd~~~-~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd  478 (564)
                      ..|..++.+|.|.-|+.|+.|+.+..+|+.- .++.+.++.|...+++++|++.-.         ++++|+.||++.|+.
T Consensus       608 kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryP---------Lfas~sdDgtv~Vfh  678 (733)
T KOG0650|consen  608 KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYP---------LFASGSDDGTVIVFH  678 (733)
T ss_pred             eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccc---------eeeeecCCCcEEEEe
Confidence            7899999999999999999999999999864 456788899999999999988654         899999999999985


Q ss_pred             CC-------C--CeEEEEEeCCCCC----EEEEEEcCCCCEEEEEeCCCcEEEE
Q 008467          479 VE-------L--GKLLYSLNGHREP----VYSLAFSPTGEYLASGSLDKSMHIW  519 (564)
Q Consensus       479 ~~-------~--~~~~~~~~~h~~~----i~~~~~spdg~~lasgs~dg~i~iw  519 (564)
                      -.       +  --.+..+.+|...    |..+.|+|...||.+++.||+|++|
T Consensus       679 g~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  679 GMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             eeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            32       1  1235667888654    8999999999999999999999998

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=3.3e-25  Score=198.03  Aligned_cols=273  Identities=26%  Similarity=0.399  Sum_probs=212.9

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCc-ce
Q 008467          273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE-EW  350 (564)
Q Consensus       273 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~-~~  350 (564)
                      +|...|..++-...-..+.+++.|.+.+||..+ |.++..+.+|.+.|.+++|++.+..++++|.|++..||...-. +.
T Consensus       146 GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~v  225 (481)
T KOG0300|consen  146 GHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEV  225 (481)
T ss_pred             ccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcC
Confidence            445667777666666688999999999999975 6788899999999999999999999999999999999962100 00


Q ss_pred             eEE--EeecccCeEEEEc-CCCceEEEE---eCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEE
Q 008467          351 KQQ--FEFHSGPTLDVDW-RNNVSFATS---STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK  424 (564)
Q Consensus       351 ~~~--~~~~~~~~~~~~~-~~~~~~~~~---~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~  424 (564)
                      .+.  -..|.+. -.... ..+..+..+   +...+|+       .|+..|.||.+.|.+..|-..|+.++++|.|.+..
T Consensus       226 P~~~a~~~hSsE-eE~e~sDe~~~d~d~~~~sD~~tiR-------vPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAn  297 (481)
T KOG0300|consen  226 PSNNAPSDHSSE-EEEEHSDEHNRDTDSSEKSDGHTIR-------VPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTAN  297 (481)
T ss_pred             CCCCCCCCCCch-hhhhcccccccccccccccCCceee-------eeeeeeeccccceEehhhhcCcceeeeeeccccce
Confidence            000  0000000 00000 011111111   1112332       37788999999999999999999999999999999


Q ss_pred             EEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-CeEEEEEeCCCCCEEEEEEcCC
Q 008467          425 IWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-GKLLYSLNGHREPVYSLAFSPT  503 (564)
Q Consensus       425 iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~h~~~i~~~~~spd  503 (564)
                      +||..++..++.+.+|..+.+.++-+|..         .+++++|.|.+.++||.+. -..+..+.||...|+++.|.-|
T Consensus       298 lwDVEtge~v~~LtGHd~ELtHcstHptQ---------rLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d  368 (481)
T KOG0300|consen  298 LWDVETGEVVNILTGHDSELTHCSTHPTQ---------RLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD  368 (481)
T ss_pred             eeeeccCceeccccCcchhccccccCCcc---------eEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC
Confidence            99999999999999999988877766653         3788999999999999983 2456789999999999999865


Q ss_pred             CCEEEEEeCCCcEEEEeCCCC-eEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          504 GEYLASGSLDKSMHIWSLKEG-KIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       504 g~~lasgs~dg~i~iw~~~~~-~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                       ..+++||.|.+|+|||+++. ..+.++....+++.++.+..+..+|.-..|..|++||+.
T Consensus       369 -d~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDln  428 (481)
T KOG0300|consen  369 -DRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLN  428 (481)
T ss_pred             -CceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecC
Confidence             56889999999999999875 467888888899999999999999999999999999973

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.94  E-value=2.4e-23  Score=203.77  Aligned_cols=286  Identities=14%  Similarity=0.130  Sum_probs=205.3

Q ss_pred             CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEE-EEEeCCCeEEEEECCC
Q 008467          228 GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL-ATGSYDGQARIWSTNG  306 (564)
Q Consensus       228 ~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l-~sg~~dg~i~vw~~~~  306 (564)
                      +.+++|++.|+.+++||+.++...             .....     ...+.+++|+|+|..+ ++++.++.|++|+...
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~-------------~~~~~-----~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~   62 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVT-------------RTFPV-----GQRPRGITLSKDGKLLYVCASDSDTIQVIDLAT   62 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceE-------------EEEEC-----CCCCCceEECCCCCEEEEEECCCCeEEEEECCC
Confidence            357889999999999998765311             11111     1235679999999876 5677889999999764


Q ss_pred             -ceeEeecCCCCCEEEEEeCCCCCEEEE-eeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCc-eEEEEeCC-CeEE
Q 008467          307 -DLKCTLSKHKGPIFSLKWNKKGDYLLT-GSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV-SFATSSTD-NMIY  382 (564)
Q Consensus       307 -~~~~~~~~h~~~V~~l~~~~~~~~l~s-~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d-~~i~  382 (564)
                       .....+..+.. +..+.|+|+++.+++ ++.|+.+++||+.+...+..+... ..+..+.|.++. .++++..+ ..++
T Consensus        63 ~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~  140 (300)
T TIGR03866        63 GEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAH  140 (300)
T ss_pred             CcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEE
Confidence             44444554444 467899999997765 456899999999987766665432 234556675543 45555544 3567


Q ss_pred             EEEcCCCceeeEecCCCcceEEEEECCCCCEEE-EEeCCCcEEEEeCCCCeeeeecccccc-------cEEEEEEccCCC
Q 008467          383 VCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVTAKIWNMKQDKYVHDLREHSK-------EIYTIRWSPTGS  454 (564)
Q Consensus       383 ~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~la-s~s~dg~i~iwd~~~~~~~~~~~~~~~-------~i~~i~~~p~~~  454 (564)
                      .|+......+..... ...+.+++|+|++++|+ ++..++.|++||+.+++.+..+..+..       ....+.|+|++.
T Consensus       141 ~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~  219 (300)
T TIGR03866       141 FIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGK  219 (300)
T ss_pred             EEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCC
Confidence            778877665544332 23457899999999875 455699999999998877665542211       124577887764


Q ss_pred             CCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCeEEEEEecC
Q 008467          455 GTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASG-SLDKSMHIWSLKEGKIVKTYTGN  533 (564)
Q Consensus       455 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasg-s~dg~i~iw~~~~~~~~~~~~~~  533 (564)
                              .++++.+.++.|.+||+++++.+..+. +...+.+++|+|+|++|+++ +.+|.|.+||+.+++++..+...
T Consensus       220 --------~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~  290 (300)
T TIGR03866       220 --------TAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG  290 (300)
T ss_pred             --------EEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc
Confidence                    344555567789999999888776553 34578999999999999876 46899999999999999998877


Q ss_pred             CCEEEEEEcc
Q 008467          534 GGIFEVCWNK  543 (564)
Q Consensus       534 ~~i~~~~w~~  543 (564)
                      .+.++++++|
T Consensus       291 ~~~~~~~~~~  300 (300)
T TIGR03866       291 RLPWGVVVRP  300 (300)
T ss_pred             cccceeEeCC
Confidence            7788888875

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.7e-24  Score=193.85  Aligned_cols=277  Identities=18%  Similarity=0.284  Sum_probs=201.3

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCcee---Eee--cCCCCCEEEEEeCCCCCEEE-EeeCCCcEEEEECC
Q 008467          273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLK---CTL--SKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVK  346 (564)
Q Consensus       273 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~---~~~--~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~  346 (564)
                      +|.+.|++++|++||++|+|++.|+.||+|++..-..   ..+  ...-+--+.+.|.||.+-++ ++-...++++|-+.
T Consensus        84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~  163 (420)
T KOG2096|consen   84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLV  163 (420)
T ss_pred             ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEee
Confidence            4578899999999999999999999999999753111   001  11112347789999987654 55566689999753


Q ss_pred             C---cceeEE---------EeecccCeEEEEcCCC-ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCE
Q 008467          347 T---EEWKQQ---------FEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSL  413 (564)
Q Consensus       347 ~---~~~~~~---------~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~  413 (564)
                      .   |.....         -..|..+++++...++ ..+++++.|..|.+|+++ ++.+.........-...+.||+|++
T Consensus       164 K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRF  242 (420)
T KOG2096|consen  164 KKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRF  242 (420)
T ss_pred             ecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcE
Confidence            2   221111         1123445666665555 456788999999999998 6766666655556667889999999


Q ss_pred             EEEEeCCCcEEEEeCC---CC-----eeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC----
Q 008467          414 LASCSDDVTAKIWNMK---QD-----KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL----  481 (564)
Q Consensus       414 las~s~dg~i~iwd~~---~~-----~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~----  481 (564)
                      ||+++..--+++|..-   .+     ..+..+++|...|..++|+|+..         .+++.|.||++||||+.-    
T Consensus       243 ia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~---------r~vtvSkDG~wriwdtdVrY~~  313 (420)
T KOG2096|consen  243 IAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST---------RAVTVSKDGKWRIWDTDVRYEA  313 (420)
T ss_pred             EEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc---------eeEEEecCCcEEEeeccceEec
Confidence            9999999999999852   22     23567889999999999999764         689999999999999753    


Q ss_pred             CeEEEEEe-------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec--CCCEEEEEEccCCCEEEEEE
Q 008467          482 GKLLYSLN-------GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG--NGGIFEVCWNKEGDKIAACF  552 (564)
Q Consensus       482 ~~~~~~~~-------~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~--~~~i~~~~w~~~g~~la~~~  552 (564)
                      ++-.+.++       .-...-..++.||.|+.||.+. ...+++|..++|+....+..  .+.|.+++|+++|+++|+| 
T Consensus       314 ~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atc-  391 (420)
T KOG2096|consen  314 GQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATC-  391 (420)
T ss_pred             CCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeee-
Confidence            11111111       1122234899999999998654 44699999999987666543  4679999999999999999 


Q ss_pred             cCCcEEEEE
Q 008467          553 ANHTVCVLD  561 (564)
Q Consensus       553 ~~~~v~v~~  561 (564)
                      +|..+.|+.
T Consensus       392 Gdr~vrv~~  400 (420)
T KOG2096|consen  392 GDRYVRVIR  400 (420)
T ss_pred             cceeeeeec
Confidence            566787763

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=2e-24  Score=193.30  Aligned_cols=260  Identities=17%  Similarity=0.348  Sum_probs=207.5

Q ss_pred             EEEEeCCCeEEEEECCCc-------------eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEee
Q 008467          290 LATGSYDGQARIWSTNGD-------------LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF  356 (564)
Q Consensus       290 l~sg~~dg~i~vw~~~~~-------------~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~  356 (564)
                      |+.|++...|.-++..-.             ....+..|.++|++++.+  +.++++||.|-+|+|||+++......+..
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~   81 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLS   81 (362)
T ss_pred             EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceec
Confidence            566777666665553211             123467899999999875  78999999999999999999888888888


Q ss_pred             cccCeEEEEcCCCc---eEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCee
Q 008467          357 HSGPTLDVDWRNNV---SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY  433 (564)
Q Consensus       357 ~~~~~~~~~~~~~~---~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~  433 (564)
                      |.+.+.++.|....   .+++++.||.|.+|+.+.-..+..+++|.+.|+.++++|.+++-++.+.|+.+++||+-.++.
T Consensus        82 HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~  161 (362)
T KOG0294|consen   82 HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRV  161 (362)
T ss_pred             cccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCcc
Confidence            99999998886655   799999999999999999999999999999999999999999999999999999999987765


Q ss_pred             eeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC
Q 008467          434 VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD  513 (564)
Q Consensus       434 ~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~d  513 (564)
                      ...++- ...-+.+.|+|.|.         .++.++. ..|-||.+.+.+....+... ..+.++.|- ++.+|++|+.|
T Consensus       162 a~v~~L-~~~at~v~w~~~Gd---------~F~v~~~-~~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~L~vG~d~  228 (362)
T KOG0294|consen  162 AFVLNL-KNKATLVSWSPQGD---------HFVVSGR-NKIDIYQLDNASVFREIENP-KRILCATFL-DGSELLVGGDN  228 (362)
T ss_pred             ceeecc-CCcceeeEEcCCCC---------EEEEEec-cEEEEEecccHhHhhhhhcc-ccceeeeec-CCceEEEecCC
Confidence            433321 12234599999875         3444443 46899998876655444322 346777774 67889999999


Q ss_pred             CcEEEEeCCCCeEEEEEecCC-CEEEEE--EccCCCEEEEEEcCCcEEEEEeeC
Q 008467          514 KSMHIWSLKEGKIVKTYTGNG-GIFEVC--WNKEGDKIAACFANHTVCVLDFRM  564 (564)
Q Consensus       514 g~i~iw~~~~~~~~~~~~~~~-~i~~~~--w~~~g~~la~~~~~~~v~v~~~~~  564 (564)
                      +.|.+||..++.....+.++. .|-++.  =+|++.+|+++++||.|+|||++|
T Consensus       229 ~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~  282 (362)
T KOG0294|consen  229 EWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDM  282 (362)
T ss_pred             ceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccc
Confidence            999999999988887776653 466655  377899999999999999999986

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=2.8e-25  Score=217.85  Aligned_cols=285  Identities=23%  Similarity=0.350  Sum_probs=223.1

Q ss_pred             EEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEE--------------------eeccccccCCCCeEEEEECCCCCE
Q 008467          230 LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLK--------------------HVKGRTNEKSKDVTTLDWNGEGTL  289 (564)
Q Consensus       230 ~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~V~~l~~s~~g~~  289 (564)
                      -+.|++.|++||+|++..+.........++....++                    +.....-.....|.+++.||+|++
T Consensus       394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh  473 (1080)
T KOG1408|consen  394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH  473 (1080)
T ss_pred             ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence            488999999999999976433221111110000000                    000001112346999999999999


Q ss_pred             EEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEeCCC---CCEEEEeeCCCcEEEEECC-CcceeEEEeecccCeEEE
Q 008467          290 LATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKK---GDYLLTGSCDKTAIVWDVK-TEEWKQQFEFHSGPTLDV  364 (564)
Q Consensus       290 l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~---~~~l~s~s~D~~v~iwd~~-~~~~~~~~~~~~~~~~~~  364 (564)
                      ||+|..-|++|||++.. ...+.+..|...|.||.|+.-   .+.|++++.|+-|.|+|+. .-.+++++..|...+..+
T Consensus       474 LAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsv  553 (1080)
T KOG1408|consen  474 LASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSV  553 (1080)
T ss_pred             ecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEE
Confidence            99999999999999754 456678899999999999852   4678999999999999985 445677888999999999


Q ss_pred             EcCC---CceEEEEeCCCeEEEEEcCCCceeeEecCCC-----cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeee
Q 008467          365 DWRN---NVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-----GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD  436 (564)
Q Consensus       365 ~~~~---~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-----~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~  436 (564)
                      .|..   +...++|+.|..|++-..........|..|.     ..+..++..|..+++++++.|..|+||++.+++.++.
T Consensus       554 KFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~  633 (1080)
T KOG1408|consen  554 KFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKS  633 (1080)
T ss_pred             EEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeee
Confidence            8853   3577899999988654433322233344333     3577899999999999999999999999999999999


Q ss_pred             ccc---ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC
Q 008467          437 LRE---HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD  513 (564)
Q Consensus       437 ~~~---~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~d  513 (564)
                      |++   |.+....+...|.|.         +|++...|.++.++|..+|+++..+.||...|+.+.|++|.+.|++.+.|
T Consensus       634 FKgs~~~eG~lIKv~lDPSgi---------Y~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgD  704 (1080)
T KOG1408|consen  634 FKGSRDHEGDLIKVILDPSGI---------YLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGD  704 (1080)
T ss_pred             ecccccCCCceEEEEECCCcc---------EEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCC
Confidence            875   556677778888774         89999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEeCCC
Q 008467          514 KSMHIWSLKE  523 (564)
Q Consensus       514 g~i~iw~~~~  523 (564)
                      |.|.||.+..
T Consensus       705 gCIFvW~lp~  714 (1080)
T KOG1408|consen  705 GCIFVWKLPL  714 (1080)
T ss_pred             ceEEEEECch
Confidence            9999999864

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.1e-25  Score=223.13  Aligned_cols=288  Identities=23%  Similarity=0.389  Sum_probs=220.5

Q ss_pred             ceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC-CCCEEEEEeCC
Q 008467          218 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGTLLATGSYD  296 (564)
Q Consensus       218 ~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~l~sg~~d  296 (564)
                      ...+++.+++-..++.+| -..++|+.+.......     +.+     +..+...........+.|+. +.++|||++..
T Consensus        41 ~~nAIs~nr~~~qiv~AG-rs~lklyai~~~~~~~-----~~~-----~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~n  109 (839)
T KOG0269|consen   41 KANAISVNRDINQIVVAG-RSLLKLYAINPNDFSE-----KCN-----HRFKTKQNKFYSAADVKWGQLYSNLIATCSTN  109 (839)
T ss_pred             ccceEeecCCcceeEEec-ccceeeEeeCcccCCc-----cee-----eecccccceeeehhhcccccchhhhheeecCC
Confidence            345677778866665554 4578888876432211     111     11011111123345677875 56899999999


Q ss_pred             CeEEEEECCC----ceeEeecCCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcC--CC
Q 008467          297 GQARIWSTNG----DLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR--NN  369 (564)
Q Consensus       297 g~i~vw~~~~----~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~  369 (564)
                      |.|.+||++.    .+...|..|+..|.++.|++.. ++|++||.||+|++||++..+-+.++......+.++.|.  ..
T Consensus       110 G~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~  189 (839)
T KOG0269|consen  110 GVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYG  189 (839)
T ss_pred             CcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCC
Confidence            9999999875    3445788999999999999865 578999999999999999998888888888889899885  46


Q ss_pred             ceEEEEeCCCeEEEEEcCCC-ceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCee--eeecccccccEEE
Q 008467          370 VSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY--VHDLREHSKEIYT  446 (564)
Q Consensus       370 ~~~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~--~~~~~~~~~~i~~  446 (564)
                      ..|++....|.+..||++.. ++...|..|.++|.|+.|+|++.+||||+.|++|+|||+.+.+.  .+++. -..++..
T Consensus       190 ~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~r  268 (839)
T KOG0269|consen  190 NKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGR  268 (839)
T ss_pred             ceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeee
Confidence            78999999999999999864 56788999999999999999999999999999999999986543  22322 3467899


Q ss_pred             EEEccCCCCCCCCCCcEEEEEEeC--CCeEEEEeCCCCe-EEEEEeCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeCC
Q 008467          447 IRWSPTGSGTNNPNQQLILASASF--DSTVKLWDVELGK-LLYSLNGHREPVYSLAFSP-TGEYLASGSLDKSMHIWSLK  522 (564)
Q Consensus       447 i~~~p~~~~~~~~~~~~~l~s~s~--dg~i~iwd~~~~~-~~~~~~~h~~~i~~~~~sp-dg~~lasgs~dg~i~iw~~~  522 (564)
                      ++|.|...        ..||++++  |-.|+|||++..- +..++..|+..++.++|.. |-..|-+++.||+|..-.++
T Consensus       269 VkWRP~~~--------~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~k  340 (839)
T KOG0269|consen  269 VKWRPARS--------YHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFK  340 (839)
T ss_pred             eeeccCcc--------chhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhh
Confidence            99998754        46888775  7789999998543 3467888999999999965 45677899999988766665


Q ss_pred             CCe
Q 008467          523 EGK  525 (564)
Q Consensus       523 ~~~  525 (564)
                      ++.
T Consensus       341 nat  343 (839)
T KOG0269|consen  341 NAT  343 (839)
T ss_pred             ccc
Confidence            543

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.6e-24  Score=219.06  Aligned_cols=241  Identities=21%  Similarity=0.359  Sum_probs=205.3

Q ss_pred             cCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCc-ceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCce
Q 008467          313 SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE-EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRP  391 (564)
Q Consensus       313 ~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~  391 (564)
                      ..|+..-+.|+|.|+|.+|++++.||.|++|+.... +-...+..+...+..+.-.. ..|++++.+++|.+|.+.++..
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s-~~f~~~s~~~tv~~y~fps~~~   88 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS-NHFLTGSEQNTVLRYKFPSGEE   88 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc-cceEEeeccceEEEeeCCCCCc
Confidence            368888999999999999999999999999987554 33333333445555554433 3899999999999999988776


Q ss_pred             eeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC
Q 008467          392 IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD  471 (564)
Q Consensus       392 ~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d  471 (564)
                      -..+...+-++++++++.+|+++|.||+|-.|++-++........+++|.++|.++.|.|.+.         +||+.+.|
T Consensus        89 ~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~---------fLAvss~d  159 (933)
T KOG1274|consen   89 DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGN---------FLAVSSCD  159 (933)
T ss_pred             cceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCC---------EEEEEecC
Confidence            655666677899999999999999999999999999999988999999999999999999875         89999999


Q ss_pred             CeEEEEeCCCCeEEEEEeCC--------CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC---CCEEEEE
Q 008467          472 STVKLWDVELGKLLYSLNGH--------REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN---GGIFEVC  540 (564)
Q Consensus       472 g~i~iwd~~~~~~~~~~~~h--------~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~---~~i~~~~  540 (564)
                      |.|+|||+.++.+..++.+-        ...+..++|+|+|..+|..+.|+.|++|+..++.+...+..+   ..+..++
T Consensus       160 G~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~  239 (933)
T KOG1274|consen  160 GKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQ  239 (933)
T ss_pred             ceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEE
Confidence            99999999998887776532        345778999999888888889999999999999988877653   3488999


Q ss_pred             EccCCCEEEEEEcCCcEEEEEee
Q 008467          541 WNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       541 w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      |+|-|++||+++.||.|.|||++
T Consensus       240 wsPnG~YiAAs~~~g~I~vWnv~  262 (933)
T KOG1274|consen  240 WSPNGKYIAASTLDGQILVWNVD  262 (933)
T ss_pred             EcCCCcEEeeeccCCcEEEEecc
Confidence            99999999999999999999986

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=2.8e-25  Score=216.23  Aligned_cols=231  Identities=24%  Similarity=0.441  Sum_probs=198.0

Q ss_pred             CCCCEEEEEeCCCeEEEEECCCc-------eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeec
Q 008467          285 GEGTLLATGSYDGQARIWSTNGD-------LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH  357 (564)
Q Consensus       285 ~~g~~l~sg~~dg~i~vw~~~~~-------~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~  357 (564)
                      |.+++|+|||.||.|++|+....       ....+..|..-|..+....+++.|+++|.|-+|++|+...+.        
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~--------  106 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN--------  106 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc--------
Confidence            46778999999999999986421       244677899989888888899999999999999999976531        


Q ss_pred             ccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEE-CCCCCEEEEEeCCCcEEEEeCCCCe--ee
Q 008467          358 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKW-DPTGSLLASCSDDVTAKIWNMKQDK--YV  434 (564)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~-~~~~~~las~s~dg~i~iwd~~~~~--~~  434 (564)
                                                     ...+.++..|...|.|+++ -++..++|||+-|+.|.+||++++.  .+
T Consensus       107 -------------------------------~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~  155 (735)
T KOG0308|consen  107 -------------------------------TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLV  155 (735)
T ss_pred             -------------------------------chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhh
Confidence                                           0123456789999999999 7888999999999999999998762  22


Q ss_pred             --------eecc-cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCC
Q 008467          435 --------HDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGE  505 (564)
Q Consensus       435 --------~~~~-~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~  505 (564)
                              ..+. ++..+||+++-.+.|.         ++++|+..+.+++||.++++.+..+.||+..|..+..++||+
T Consensus       156 ~s~n~~t~~sl~sG~k~siYSLA~N~t~t---------~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt  226 (735)
T KOG0308|consen  156 ASFNNVTVNSLGSGPKDSIYSLAMNQTGT---------IIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGT  226 (735)
T ss_pred             hhccccccccCCCCCccceeeeecCCcce---------EEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCC
Confidence                    2233 6778899999888774         799999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEEecC-CCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          506 YLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       506 ~lasgs~dg~i~iw~~~~~~~~~~~~~~-~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      .+++||.||+|++||+...+++.+|..+ .+++++.-+|+=+++-+|..+|.|..=|+|
T Consensus       227 ~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~  285 (735)
T KOG0308|consen  227 RLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLR  285 (735)
T ss_pred             eEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccC
Confidence            9999999999999999999999998754 468899999999999999999998877765

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.93  E-value=6.1e-23  Score=200.85  Aligned_cols=265  Identities=14%  Similarity=0.157  Sum_probs=199.6

Q ss_pred             CCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEE-EEeeCCCcEEEEECCCcceeEEEeecccCeEEE
Q 008467          287 GTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV  364 (564)
Q Consensus       287 g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~  364 (564)
                      +.++++++.||.+++|+.. +.....+..+.. +.++.|+|++..+ ++++.++.|++||+.+++....+..+.. ...+
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~   78 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELF   78 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEE
Confidence            3578899999999999975 455566665544 5789999999876 5677889999999999887766654433 3345


Q ss_pred             EcCCC--ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCC-cEEEEeCCCCeeeeeccccc
Q 008467          365 DWRNN--VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV-TAKIWNMKQDKYVHDLREHS  441 (564)
Q Consensus       365 ~~~~~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg-~i~iwd~~~~~~~~~~~~~~  441 (564)
                      .|.++  ..+++++.++.+++|++...+.+..+.. ...+.+++|+|+++++++++.++ .+.+||..++.....+.. .
T Consensus        79 ~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~  156 (300)
T TIGR03866        79 ALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-D  156 (300)
T ss_pred             EECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-C
Confidence            56544  3445666789999999988777766653 23467899999999999988875 467789988776554432 2


Q ss_pred             ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCC-------CCEEEEEEcCCCCEEEE-EeCC
Q 008467          442 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR-------EPVYSLAFSPTGEYLAS-GSLD  513 (564)
Q Consensus       442 ~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-------~~i~~~~~spdg~~las-gs~d  513 (564)
                      .....+.|+|++.        .+++++..++.|++||+.+++.+..+..+.       .....++|+|+|+++++ .+.+
T Consensus       157 ~~~~~~~~s~dg~--------~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~  228 (300)
T TIGR03866       157 QRPRFAEFTADGK--------ELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA  228 (300)
T ss_pred             CCccEEEECCCCC--------EEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCC
Confidence            3456788988874        344666679999999999988776654321       12356899999998654 4556


Q ss_pred             CcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEE-EcCCcEEEEEee
Q 008467          514 KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAAC-FANHTVCVLDFR  563 (564)
Q Consensus       514 g~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~-~~~~~v~v~~~~  563 (564)
                      +.|.+||+++++++........+.+++|+|+|++|+++ ..++.|.|||++
T Consensus       229 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~  279 (300)
T TIGR03866       229 NRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVA  279 (300)
T ss_pred             CeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECC
Confidence            78999999999888766556678999999999999876 458899999986

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=2.5e-26  Score=226.03  Aligned_cols=255  Identities=27%  Similarity=0.499  Sum_probs=217.0

Q ss_pred             CCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC
Q 008467          227 AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG  306 (564)
Q Consensus       227 ~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~  306 (564)
                      -+..+..+..+..+++|+....                       ..|+..|.++..-..++.+++|+.|..+-+|....
T Consensus         3 ~~~~~m~~~~~t~Lr~~~~~~~-----------------------~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~k   59 (825)
T KOG0267|consen    3 GMEFLMKTKRATKLRVWDTREF-----------------------VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGK   59 (825)
T ss_pred             cccccceeeeeeccccccchhh-----------------------hhhhhhhceeeeeccceeeccCCCceeeccccccC
Confidence            3344556666677788875421                       12345566666666778999999999999998653


Q ss_pred             -ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEE
Q 008467          307 -DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCK  385 (564)
Q Consensus       307 -~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~  385 (564)
                       .....+.+|.++|-+|.|++....|++|+.+|+|++||+...+                                    
T Consensus        60 p~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk------------------------------------  103 (825)
T KOG0267|consen   60 PNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK------------------------------------  103 (825)
T ss_pred             CchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh------------------------------------
Confidence             3344688999999999999999999999999999999997643                                    


Q ss_pred             cCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEE
Q 008467          386 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLIL  465 (564)
Q Consensus       386 ~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l  465 (564)
                           .++++.||...+.++.|+|-+.++|+|+.|+.+++||.+...|.+.+.+|...+..++|+|+|.         ++
T Consensus       104 -----~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr---------~v  169 (825)
T KOG0267|consen  104 -----IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGR---------WV  169 (825)
T ss_pred             -----hhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCc---------ee
Confidence                 3456788999999999999999999999999999999999999999999999999999999997         79


Q ss_pred             EEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec-CCCEEEEEEccC
Q 008467          466 ASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKE  544 (564)
Q Consensus       466 ~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~-~~~i~~~~w~~~  544 (564)
                      ++|+.|.+++|||...|+.+..+..|...|.++.|+|..-.+++||.|++|++||+++-+++..... ..+|-+++|+|+
T Consensus       170 ~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~  249 (825)
T KOG0267|consen  170 ASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPD  249 (825)
T ss_pred             eccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCC
Confidence            9999999999999999999999999999999999999999999999999999999998877765543 356889999999


Q ss_pred             CCEEEEEEcC
Q 008467          545 GDKIAACFAN  554 (564)
Q Consensus       545 g~~la~~~~~  554 (564)
                      |..++.|...
T Consensus       250 ~~~~~~G~q~  259 (825)
T KOG0267|consen  250 GKIVLSGEQI  259 (825)
T ss_pred             ceeeecCchh
Confidence            9988877543

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=1.2e-23  Score=187.35  Aligned_cols=236  Identities=20%  Similarity=0.381  Sum_probs=183.3

Q ss_pred             CCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCC--ce-eEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcc
Q 008467          274 KSKDVTTLDWNG-EGTLLATGSYDGQARIWSTNG--DL-KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE  349 (564)
Q Consensus       274 ~~~~V~~l~~s~-~g~~l~sg~~dg~i~vw~~~~--~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~  349 (564)
                      ....|.+|+||| ...+++.|+.||+||+|+++.  .. ......|.+||.+++|+.+|..+++|+.|+.+++||+.+++
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q  105 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ  105 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence            456799999999 666777999999999999764  22 23456799999999999999999999999999999998874


Q ss_pred             eeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCC--EEEEEeCCCcEEEEe
Q 008467          350 WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS--LLASCSDDVTAKIWN  427 (564)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~--~las~s~dg~i~iwd  427 (564)
                      ..                                          .+..|.++|.++.|-+...  .|+|||.|.+||.||
T Consensus       106 ~~------------------------------------------~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD  143 (347)
T KOG0647|consen  106 VS------------------------------------------QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWD  143 (347)
T ss_pred             ee------------------------------------------eeeecccceeEEEEecCCCcceeEecccccceeecc
Confidence            32                                          2345778888888876554  899999999999999


Q ss_pred             CCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEE--eCCCCCEEEEEEcCCCC
Q 008467          428 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL--NGHREPVYSLAFSPTGE  505 (564)
Q Consensus       428 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~h~~~i~~~~~spdg~  505 (564)
                      ++...++.++.- ...+++...-.           .+++.+..+..|.+++++++...+..  ....-.+.+|+..+|..
T Consensus       144 ~R~~~pv~t~~L-PeRvYa~Dv~~-----------pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~  211 (347)
T KOG0647|consen  144 TRSSNPVATLQL-PERVYAADVLY-----------PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKD  211 (347)
T ss_pred             cCCCCeeeeeec-cceeeehhccC-----------ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCC
Confidence            999888877653 34566654321           26777888999999999876443221  11223478999989988


Q ss_pred             EEEEEeCCCcEEEEeCCCCe--EEEEEecC-------C---CEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          506 YLASGSLDKSMHIWSLKEGK--IVKTYTGN-------G---GIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       506 ~lasgs~dg~i~iw~~~~~~--~~~~~~~~-------~---~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      ..|.|+-.|++-|..+..+.  .--+|..+       .   .|++++|+|.-..|+++++||+...||-+
T Consensus       212 ~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkd  281 (347)
T KOG0647|consen  212 GFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKD  281 (347)
T ss_pred             ceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecch
Confidence            88999999999999998873  22333322       1   25689999998999999999999999854

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.2e-23  Score=197.30  Aligned_cols=280  Identities=16%  Similarity=0.253  Sum_probs=222.3

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCce---eEeecCCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCc
Q 008467          273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL---KCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTE  348 (564)
Q Consensus       273 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~---~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~  348 (564)
                      +....|+++.|+|...++++|+.||.++||.++|+.   +..+.--..||.+.+|.|+|. .+++++.-..+..||+.+.
T Consensus       211 ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a  290 (514)
T KOG2055|consen  211 PSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA  290 (514)
T ss_pred             cCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence            345789999999999999999999999999998764   344555678999999999999 8899999999999999887


Q ss_pred             ceeEEEee--ccc-CeEEEEc-CCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEE
Q 008467          349 EWKQQFEF--HSG-PTLDVDW-RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK  424 (564)
Q Consensus       349 ~~~~~~~~--~~~-~~~~~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~  424 (564)
                      ++.+.-..  +.. .+-.+.. +....++..+..|.|++....++..+..++ -.+.|..++|+.+++.|++++.+|.|.
T Consensus       291 k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~  369 (514)
T KOG2055|consen  291 KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVY  369 (514)
T ss_pred             ccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEE
Confidence            75442211  111 1111111 233466788889999998888777766665 367899999999999999999999999


Q ss_pred             EEeCCCCeeeeecccccc-cEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC------CeEEEEEeCCCCCEEE
Q 008467          425 IWNMKQDKYVHDLREHSK-EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL------GKLLYSLNGHREPVYS  497 (564)
Q Consensus       425 iwd~~~~~~~~~~~~~~~-~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~------~~~~~~~~~h~~~i~~  497 (564)
                      +||++...+++.+....+ .-++++.++++.         +||+||..|.|.|||..+      .+++..+..-...|++
T Consensus       370 v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~---------ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Its  440 (514)
T KOG2055|consen  370 VWNLRQNSCLHRFVDDGSVHGTSLCISLNGS---------YLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITS  440 (514)
T ss_pred             EEecCCcceEEEEeecCccceeeeeecCCCc---------eEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeee
Confidence            999999998888764332 125666667765         899999999999999653      3566677777788999


Q ss_pred             EEEcCCCCEEEEEeC--CCcEEEEeCCCCeEEEEEecC----CCEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467          498 LAFSPTGEYLASGSL--DKSMHIWSLKEGKIVKTYTGN----GGIFEVCWNKEGDKIAACFANHTVCVLDF  562 (564)
Q Consensus       498 ~~~spdg~~lasgs~--dg~i~iw~~~~~~~~~~~~~~----~~i~~~~w~~~g~~la~~~~~~~v~v~~~  562 (564)
                      +.|+||++.||.+|.  +..+++-.+.+-.+...|+..    +-+++++|+|.|-+||+|-..|.|.+|.+
T Consensus       441 l~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL  511 (514)
T KOG2055|consen  441 LQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL  511 (514)
T ss_pred             eeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence            999999999998874  568999888877766666542    34789999999999999999999999976

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=8.2e-24  Score=198.87  Aligned_cols=228  Identities=21%  Similarity=0.380  Sum_probs=191.2

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEE
Q 008467          275 SKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ  353 (564)
Q Consensus       275 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~  353 (564)
                      .++|.+++-+|+|.+|+.|+..|.+++|.+. |.+...+.+|=.+|++++|+.||.+|+|||.||.|.+|++..      
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~------  154 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTD------  154 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEe------
Confidence            4679999999999999999999999999975 677788899999999999999999999999999999998632      


Q ss_pred             EeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC--CCEEEEEeCCCcEEEEeCCCC
Q 008467          354 FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKIWNMKQD  431 (564)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~--~~~las~s~dg~i~iwd~~~~  431 (564)
                                        ++....++        ..+|+..|..|+-.|+.+...+-  ...|+|+|.|.++++||+..+
T Consensus       155 ------------------lv~a~~~~--------~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g  208 (476)
T KOG0646|consen  155 ------------------LVSADNDH--------SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG  208 (476)
T ss_pred             ------------------ecccccCC--------CccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc
Confidence                              11111111        35688899999999999888764  357999999999999999999


Q ss_pred             eeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC----------------CeEEEEEeCCCC--
Q 008467          432 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL----------------GKLLYSLNGHRE--  493 (564)
Q Consensus       432 ~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~----------------~~~~~~~~~h~~--  493 (564)
                      ..+.++. ....+.++...|...         .+..|+.+|.|.+.++..                +..+..+.||..  
T Consensus       209 ~LLlti~-fp~si~av~lDpae~---------~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~  278 (476)
T KOG0646|consen  209 VLLLTIT-FPSSIKAVALDPAER---------VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENES  278 (476)
T ss_pred             eeeEEEe-cCCcceeEEEccccc---------EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCc
Confidence            8887765 345788999988764         677899999999987643                223456788987  


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe-cCCCEEEEEEccC
Q 008467          494 PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT-GNGGIFEVCWNKE  544 (564)
Q Consensus       494 ~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~-~~~~i~~~~w~~~  544 (564)
                      +|+|+++|-||..|++|+.||.|+|||+.+..++++.. ..+.|+.+.++|=
T Consensus       279 ~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~  330 (476)
T KOG0646|consen  279 AITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL  330 (476)
T ss_pred             ceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence            99999999999999999999999999999999888887 6778888888664

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=3.7e-23  Score=185.07  Aligned_cols=272  Identities=21%  Similarity=0.363  Sum_probs=211.5

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEee
Q 008467          278 VTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF  356 (564)
Q Consensus       278 V~~l~~s~~g~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~  356 (564)
                      -.|+.||+-|.+||+|..||.|.|||... .....+.+|..||.+++||++|+.|+|+|.|..|.+||+..+.+.+.+.+
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf  105 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF  105 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence            67899999999999999999999999764 34557889999999999999999999999999999999999998888776


Q ss_pred             cccCeEEEEcCC--CceEEEEeCCCeEEEEEcCCCceeeEecC--CC----cceEEEEECCCCCEEEEEeCCCcEEEEeC
Q 008467          357 HSGPTLDVDWRN--NVSFATSSTDNMIYVCKIGENRPIKTFAG--HQ----GEVNCVKWDPTGSLLASCSDDVTAKIWNM  428 (564)
Q Consensus       357 ~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~--h~----~~i~~v~~~~~~~~las~s~dg~i~iwd~  428 (564)
                      . .++....|++  ...++++-.+..-.+.++...+  ..+-.  ..    ....+..|++.|+++++|...|.+.++|.
T Consensus       106 ~-spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a  182 (405)
T KOG1273|consen  106 D-SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK--HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA  182 (405)
T ss_pred             c-CccceeeeccccCCeEEEEEecCCcEEEEecCCc--eeeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence            4 4666677753  4556666555555555555422  22211  11    12234568999999999999999999999


Q ss_pred             CCCeeeeeccccc-ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC----C---eE--EEEEeC--CCCCEE
Q 008467          429 KQDKYVHDLREHS-KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL----G---KL--LYSLNG--HREPVY  496 (564)
Q Consensus       429 ~~~~~~~~~~~~~-~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~----~---~~--~~~~~~--h~~~i~  496 (564)
                      .+.+++..++-.. ..|..|.++..|.         .|+.-+.|..||.|+++.    |   ++  .+.+..  .+..-.
T Consensus       183 ~t~e~vas~rits~~~IK~I~~s~~g~---------~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk  253 (405)
T KOG1273|consen  183 ETLECVASFRITSVQAIKQIIVSRKGR---------FLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWK  253 (405)
T ss_pred             chheeeeeeeechheeeeEEEEeccCc---------EEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhh
Confidence            9999998887665 7788899988775         677888999999999762    1   11  011110  123446


Q ss_pred             EEEEcCCCCEEEEEeC-CCcEEEEeCCCCeEEEEEecCC--CEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467          497 SLAFSPTGEYLASGSL-DKSMHIWSLKEGKIVKTYTGNG--GIFEVCWNKEGDKIAACFANHTVCVLDF  562 (564)
Q Consensus       497 ~~~~spdg~~lasgs~-dg~i~iw~~~~~~~~~~~~~~~--~i~~~~w~~~g~~la~~~~~~~v~v~~~  562 (564)
                      +++||.||.|+++|+. -..++||....|.+++.+.+..  ...++.|+|---.++.- ..|.|.||..
T Consensus       254 ~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~  321 (405)
T KOG1273|consen  254 KCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAV  321 (405)
T ss_pred             heeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEe
Confidence            7899999999987764 4579999999999999998865  37799999998777766 7789999975

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1e-21  Score=192.69  Aligned_cols=324  Identities=20%  Similarity=0.305  Sum_probs=230.5

Q ss_pred             eEccCCc-cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467          210 TILEGHT-SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  288 (564)
Q Consensus       210 ~~l~~h~-~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  288 (564)
                      .++.||. ..|.+++|. ++..|+|.+.+|.|.-||+.+.+..             +    ........|.+++.+|.++
T Consensus        62 ~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~-------------~----~~d~~gg~IWsiai~p~~~  123 (691)
T KOG2048|consen   62 PVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQK-------------Y----NIDSNGGAIWSIAINPENT  123 (691)
T ss_pred             EEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCcee-------------E----EecCCCcceeEEEeCCccc
Confidence            4555554 679999999 5566788889999999999875421             1    1122357899999999999


Q ss_pred             EEEEEeCCCeEEEEECCCcee---EeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeec-----c-c
Q 008467          289 LLATGSYDGQARIWSTNGDLK---CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH-----S-G  359 (564)
Q Consensus       289 ~l~sg~~dg~i~vw~~~~~~~---~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-----~-~  359 (564)
                      .++.|+.||.+...+.+.+..   ..+...++.|.+++|+|++..+++|+.||.|++||+.++.........     . .
T Consensus       124 ~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~  203 (691)
T KOG2048|consen  124 ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKRE  203 (691)
T ss_pred             eEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCC
Confidence            999999999877777654432   346677899999999999999999999999999999988766532221     1 1


Q ss_pred             --CeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCee--e-
Q 008467          360 --PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY--V-  434 (564)
Q Consensus       360 --~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~--~-  434 (564)
                        -+..+.+..+..++++..-|+|.+||-..+..++.+..|.+.|.|++..+++..+++++.|+.|..+...+.+.  + 
T Consensus       204 ~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~  283 (691)
T KOG2048|consen  204 PTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVI  283 (691)
T ss_pred             ceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceee
Confidence              24455566788899999999999999999999999999999999999999999999999999999888765532  1 


Q ss_pred             -eecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCe----------------------------------------
Q 008467          435 -HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDST----------------------------------------  473 (564)
Q Consensus       435 -~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~----------------------------------------  473 (564)
                       .....|...+.+++..+.           .|.+|+.|.+                                        
T Consensus       284 ~~~r~~h~hdvrs~av~~~-----------~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~  352 (691)
T KOG2048|consen  284 NSRRDLHAHDVRSMAVIEN-----------ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKA  352 (691)
T ss_pred             eccccCCcccceeeeeecc-----------eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEecc
Confidence             222346666666655443           2223333332                                        


Q ss_pred             --EEEEeCCCC----e----EEEEE-eCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC------------------
Q 008467          474 --VKLWDVELG----K----LLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG------------------  524 (564)
Q Consensus       474 --i~iwd~~~~----~----~~~~~-~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~------------------  524 (564)
                        +.+|.+.+.    +    .+..+ ......|.+.+.||+|++||.+.-- +++||.++.-                  
T Consensus       353 h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~~vk~~~v~~~~~~~~~a  431 (691)
T KOG2048|consen  353 HGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVS-RTKIYRLQPDPNVKVINVDDVPLALLDA  431 (691)
T ss_pred             ccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeecc-ceEEEEeccCcceeEEEeccchhhhccc
Confidence              333333221    0    01111 1123468999999999999987622 2444443320                  


Q ss_pred             ----------eE---------EEEEe----------------cCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          525 ----------KI---------VKTYT----------------GNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       525 ----------~~---------~~~~~----------------~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                                ++         +..++                ....|..+.-+++|++||+.+..|.|.|||+.
T Consensus       432 ~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~  505 (691)
T KOG2048|consen  432 SAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLE  505 (691)
T ss_pred             eeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcc
Confidence                      00         00000                12357889999999999999999999999975

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.92  E-value=1.1e-21  Score=196.43  Aligned_cols=319  Identities=18%  Similarity=0.334  Sum_probs=240.1

Q ss_pred             cceEEEEECCCC--CEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEe
Q 008467          217 SEVCACAWSPAG--SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS  294 (564)
Q Consensus       217 ~~V~~~~~sp~~--~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~  294 (564)
                      +.|+++ +||..  +.++.|+.+|.+.||++.+++.             +..+.    .....||++.-+|--..+|.|.
T Consensus       160 ~~Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~-------------v~~f~----~~~s~IT~ieqsPaLDVVaiG~  221 (910)
T KOG1539|consen  160 DFITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKV-------------VYTFQ----EFFSRITAIEQSPALDVVAIGL  221 (910)
T ss_pred             CceeeE-ecchhheeeEEEeecCCcEEEEEeccCcE-------------EEEec----ccccceeEeccCCcceEEEEec
Confidence            336665 57764  6788999999999999987652             12222    2236799999999889999999


Q ss_pred             CCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEE-EEeeCCCcEEEEECCCcceeEEEe-ecccCeEEEEcCCC-c
Q 008467          295 YDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVKTEEWKQQFE-FHSGPTLDVDWRNN-V  370 (564)
Q Consensus       295 ~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~-~  370 (564)
                      .+|+|.|++.. ++...++..-.+.|+++.|..||+.+ ++|+..|.+.+||+...+.+.... .|.+.+....+.+. -
T Consensus       222 ~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ep  301 (910)
T KOG1539|consen  222 ENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEP  301 (910)
T ss_pred             cCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCc
Confidence            99999999975 56666776556999999999999865 566677999999999888877665 66566666666544 4


Q ss_pred             eEEEEeCCCeEEEEEcC--CC--ceeeEecCCCcceEEEEEC-CCCCEEEEEeCCCcEEEEeCCCCee------------
Q 008467          371 SFATSSTDNMIYVCKIG--EN--RPIKTFAGHQGEVNCVKWD-PTGSLLASCSDDVTAKIWNMKQDKY------------  433 (564)
Q Consensus       371 ~~~~~~~d~~i~~~~~~--~~--~~~~~~~~h~~~i~~v~~~-~~~~~las~s~dg~i~iwd~~~~~~------------  433 (564)
                      .+++.+.|+.+++|-.+  .+  +.++.-.||..+..|++|. ..|.++.+++.|++.+.+++.....            
T Consensus       302 Vl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~  381 (910)
T KOG1539|consen  302 VLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKR  381 (910)
T ss_pred             eEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccc
Confidence            56788889887776554  33  3455557999999999987 6788899999999888887521100            


Q ss_pred             ----------------eee--------------cccccc-----------------------------cEEEEEEccCCC
Q 008467          434 ----------------VHD--------------LREHSK-----------------------------EIYTIRWSPTGS  454 (564)
Q Consensus       434 ----------------~~~--------------~~~~~~-----------------------------~i~~i~~~p~~~  454 (564)
                                      +..              +..|.+                             .+++++.++.|.
T Consensus       382 ~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGN  461 (910)
T KOG1539|consen  382 AKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGN  461 (910)
T ss_pred             cccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCc
Confidence                            000              001111                             122222222221


Q ss_pred             CCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEE---eCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe
Q 008467          455 GTNNPNQQLILASASFDSTVKLWDVELGKLLYSL---NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT  531 (564)
Q Consensus       455 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~  531 (564)
                               +.+.|+..|+|-+|++++|-...++   ..|..+|+.++...-++.+++++.+|.+++|+.++..+.+.+.
T Consensus       462 ---------F~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~  532 (910)
T KOG1539|consen  462 ---------FVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR  532 (910)
T ss_pred             ---------eEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec
Confidence                     4556788999999999999988888   4799999999999889999999999999999998766444332


Q ss_pred             -----------------------------------------c-CCCEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467          532 -----------------------------------------G-NGGIFEVCWNKEGDKIAACFANHTVCVLDF  562 (564)
Q Consensus       532 -----------------------------------------~-~~~i~~~~w~~~g~~la~~~~~~~v~v~~~  562 (564)
                                                               + ...|++++|||||++|++++.|++|++||+
T Consensus       533 l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDl  605 (910)
T KOG1539|consen  533 LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDL  605 (910)
T ss_pred             cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEec
Confidence                                                     1 245899999999999999999999999997

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=3e-23  Score=194.70  Aligned_cols=237  Identities=26%  Similarity=0.350  Sum_probs=198.7

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeE-----------------ee--cCCCCCEEEEEeCCCCCEEEEe
Q 008467          274 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC-----------------TL--SKHKGPIFSLKWNKKGDYLLTG  334 (564)
Q Consensus       274 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~-----------------~~--~~h~~~V~~l~~~~~~~~l~s~  334 (564)
                      |.-+|++++++|++.+.++++.+|+|.=|+.......                 ..  .+|...|.+++.+++|+||++|
T Consensus       141 H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatg  220 (479)
T KOG0299|consen  141 HQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATG  220 (479)
T ss_pred             ccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEec
Confidence            4567999999999999999999999999985421100                 11  2788899999999999999999


Q ss_pred             eCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEE
Q 008467          335 SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL  414 (564)
Q Consensus       335 s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l  414 (564)
                      +.|..|.||+.++.+                                         +++.|.+|.+.|.+++|-....-+
T Consensus       221 g~d~~v~Iw~~~t~e-----------------------------------------hv~~~~ghr~~V~~L~fr~gt~~l  259 (479)
T KOG0299|consen  221 GRDRHVQIWDCDTLE-----------------------------------------HVKVFKGHRGAVSSLAFRKGTSEL  259 (479)
T ss_pred             CCCceEEEecCcccc-----------------------------------------hhhcccccccceeeeeeecCccce
Confidence            999999999987754                                         455688999999999998877889


Q ss_pred             EEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCC
Q 008467          415 ASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREP  494 (564)
Q Consensus       415 as~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~  494 (564)
                      +++|.|+++++|++....++.++.+|+..|..|.-.....         .+.+|+.|+++++|++. ......+.+|.+.
T Consensus       260 ys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR---------~vtVGgrDrT~rlwKi~-eesqlifrg~~~s  329 (479)
T KOG0299|consen  260 YSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRER---------CVTVGGRDRTVRLWKIP-EESQLIFRGGEGS  329 (479)
T ss_pred             eeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccc---------eEEeccccceeEEEecc-ccceeeeeCCCCC
Confidence            9999999999999999999999999999999986554432         56677799999999995 3334567788889


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec------C-------CCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467          495 VYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG------N-------GGIFEVCWNKEGDKIAACFANHTVCVLD  561 (564)
Q Consensus       495 i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~------~-------~~i~~~~w~~~g~~la~~~~~~~v~v~~  561 (564)
                      +-|++|=. ...+++||.+|.|.+|++.+.+.+.+...      .       ..|++|+--|-.+.+|+|+.+|.|++|-
T Consensus       330 idcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~  408 (479)
T KOG0299|consen  330 IDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWK  408 (479)
T ss_pred             eeeEEEec-ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEE
Confidence            99999964 46789999999999999998888777642      1       1578999999999999999999999995


Q ss_pred             e
Q 008467          562 F  562 (564)
Q Consensus       562 ~  562 (564)
                      +
T Consensus       409 i  409 (479)
T KOG0299|consen  409 I  409 (479)
T ss_pred             e
Confidence            4

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.92  E-value=2.2e-23  Score=202.13  Aligned_cols=152  Identities=28%  Similarity=0.535  Sum_probs=122.6

Q ss_pred             eEEEEECC-CCCEEEEEeCCCcEEEEeCCCC-------eeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCe
Q 008467          402 VNCVKWDP-TGSLLASCSDDVTAKIWNMKQD-------KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDST  473 (564)
Q Consensus       402 i~~v~~~~-~~~~las~s~dg~i~iwd~~~~-------~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~  473 (564)
                      |+.+.|+| |...||.+++||.|+||.+..+       .+-..+..|...|++++|+|...        .+|++++.|-+
T Consensus       630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAa--------dvLa~asyd~T  701 (1012)
T KOG1445|consen  630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAA--------DVLAVASYDST  701 (1012)
T ss_pred             eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhh--------hHhhhhhccce
Confidence            56778887 5577999999999999998643       23456778999999999999754        27999999999


Q ss_pred             EEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCC----EEEEEEccCCCEEE
Q 008467          474 VKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG----IFEVCWNKEGDKIA  549 (564)
Q Consensus       474 i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~----i~~~~w~~~g~~la  549 (564)
                      |++||+++++....+.+|.+.|.+++|||||+.+|+.+.||+|++|+.++++. ..+.+++.    --.+.|--||.++.
T Consensus       702 i~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~-pv~Eg~gpvgtRgARi~wacdgr~vi  780 (1012)
T KOG1445|consen  702 IELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ-PVYEGKGPVGTRGARILWACDGRIVI  780 (1012)
T ss_pred             eeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC-ccccCCCCccCcceeEEEEecCcEEE
Confidence            99999999999999999999999999999999999999999999999987652 12333332    34688999999777


Q ss_pred             EEEcCC----cEEEEEe
Q 008467          550 ACFANH----TVCVLDF  562 (564)
Q Consensus       550 ~~~~~~----~v~v~~~  562 (564)
                      +.+.|+    .|.+||.
T Consensus       781 v~Gfdk~SeRQv~~Y~A  797 (1012)
T KOG1445|consen  781 VVGFDKSSERQVQMYDA  797 (1012)
T ss_pred             Eecccccchhhhhhhhh
Confidence            655443    3455543

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=4.3e-24  Score=212.00  Aligned_cols=237  Identities=24%  Similarity=0.423  Sum_probs=188.2

Q ss_pred             EEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeec--c-----cCeEEEEcC--CCceEEEEeCCCeEEEEEcCC-
Q 008467          319 IFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH--S-----GPTLDVDWR--NNVSFATSSTDNMIYVCKIGE-  388 (564)
Q Consensus       319 V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~--~-----~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~-  388 (564)
                      ..+|..+++-+.++.++. ..++|+-+............  .     ....++.|.  ....+++++..|.|.+|++.. 
T Consensus        42 ~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~  120 (839)
T KOG0269|consen   42 ANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKS  120 (839)
T ss_pred             cceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCcc
Confidence            344555677777776654 46677765443322211111  1     123466775  346789999999999999987 


Q ss_pred             --CceeeEecCCCcceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEE
Q 008467          389 --NRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLIL  465 (564)
Q Consensus       389 --~~~~~~~~~h~~~i~~v~~~~~~-~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l  465 (564)
                        ++.+..|..|+..+++++|++.. .+|+|||.||+|++||++......+++.....|..+.|+|...        ..+
T Consensus       121 ~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~--------~~F  192 (839)
T KOG0269|consen  121 IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYG--------NKF  192 (839)
T ss_pred             ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCC--------ceE
Confidence              66777899999999999999865 5789999999999999999998888998889999999999652        478


Q ss_pred             EEEeCCCeEEEEeCCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--EEEEEecCCCEEEEEEc
Q 008467          466 ASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK--IVKTYTGNGGIFEVCWN  542 (564)
Q Consensus       466 ~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~--~~~~~~~~~~i~~~~w~  542 (564)
                      +++...|.+++||++.. ++...+.+|.++|.++.|+|++.||||||.|+.|+||+..+++  .+.+.....++..|.|.
T Consensus       193 ~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWR  272 (839)
T KOG0269|consen  193 ASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWR  272 (839)
T ss_pred             EEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeec
Confidence            99999999999999864 4567788999999999999999999999999999999998654  45555666778999999


Q ss_pred             cCCC-EEEEEEc--CCcEEEEEeeC
Q 008467          543 KEGD-KIAACFA--NHTVCVLDFRM  564 (564)
Q Consensus       543 ~~g~-~la~~~~--~~~v~v~~~~~  564 (564)
                      |+-. +||+|+.  |-.|.|||+|+
T Consensus       273 P~~~~hLAtcsmv~dtsV~VWDvrR  297 (839)
T KOG0269|consen  273 PARSYHLATCSMVVDTSVHVWDVRR  297 (839)
T ss_pred             cCccchhhhhhccccceEEEEeecc
Confidence            9875 7887754  66899999984

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.92  E-value=1.8e-23  Score=197.48  Aligned_cols=239  Identities=21%  Similarity=0.334  Sum_probs=193.4

Q ss_pred             CeEEEEECCCCC-EEEEEeCCCeEEEEECCCcee---EeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeE
Q 008467          277 DVTTLDWNGEGT-LLATGSYDGQARIWSTNGDLK---CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ  352 (564)
Q Consensus       277 ~V~~l~~s~~g~-~l~sg~~dg~i~vw~~~~~~~---~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~  352 (564)
                      .+.+++|+.... .+++.+.|..+++|..+|+..   ..-......-+|+.......|+++|+..++|+|||++...   
T Consensus        36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl---  112 (673)
T KOG4378|consen   36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKL---  112 (673)
T ss_pred             cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHH---
Confidence            389999998764 334455678999998877621   1111111234556555666899999999999999997432   


Q ss_pred             EEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCe
Q 008467          353 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK  432 (564)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~  432 (564)
                                                            ..+.+++|++.|+++.++....+||+++..|.|.|-.+.++.
T Consensus       113 --------------------------------------~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~  154 (673)
T KOG4378|consen  113 --------------------------------------IHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQ  154 (673)
T ss_pred             --------------------------------------HhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCc
Confidence                                                  234567899999999999999999999999999999999887


Q ss_pred             eeeecccc-cccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEE-eCCCCCEEEEEEcCCC-CEEEE
Q 008467          433 YVHDLREH-SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-NGHREPVYSLAFSPTG-EYLAS  509 (564)
Q Consensus       433 ~~~~~~~~-~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~h~~~i~~~~~spdg-~~las  509 (564)
                      ....|... ...+.-+.|+|...        .+|.+++.+|.|.+||+.....++.+ ..|..|...|+|||.. ..||+
T Consensus       155 ~tt~f~~~sgqsvRll~ys~skr--------~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vs  226 (673)
T KOG4378|consen  155 KTTTFTIDSGQSVRLLRYSPSKR--------FLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVS  226 (673)
T ss_pred             cccceecCCCCeEEEeecccccc--------eeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEE
Confidence            77777654 34556788988654        57899999999999999877766554 6799999999999976 56789


Q ss_pred             EeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEEeeC
Q 008467          510 GSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFRM  564 (564)
Q Consensus       510 gs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~~  564 (564)
                      .|.|+.|.+||....+....+.-..+...++|.++|.+|++|..+|.|..||+|+
T Consensus       227 VG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~  281 (673)
T KOG4378|consen  227 VGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRS  281 (673)
T ss_pred             ecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEeccc
Confidence            9999999999999888888888788899999999999999999999999999996

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=8.2e-25  Score=215.40  Aligned_cols=236  Identities=25%  Similarity=0.501  Sum_probs=204.9

Q ss_pred             ccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEE
Q 008467          212 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA  291 (564)
Q Consensus       212 l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~  291 (564)
                      .-.|...|.++..-..++.+++|+.|-.+-+|.+...-.          ...       ...|..+|.++.|+++..+|+
T Consensus        24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~----------i~S-------~~~hespIeSl~f~~~E~Lla   86 (825)
T KOG0267|consen   24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNA----------ITS-------LTGHESPIESLTFDTSERLLA   86 (825)
T ss_pred             hhhhhhhhceeeeeccceeeccCCCceeeccccccCCch----------hhe-------eeccCCcceeeecCcchhhhc
Confidence            446888888888866789999999999999998753211          111       234678899999999999999


Q ss_pred             EEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCc
Q 008467          292 TGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV  370 (564)
Q Consensus       292 sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (564)
                      .|+.+|+|++||.. +....++.+|...+.++.|+|-+.++++|+.|+.+++||.+...                     
T Consensus        87 agsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G---------------------  145 (825)
T KOG0267|consen   87 AGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG---------------------  145 (825)
T ss_pred             ccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccC---------------------
Confidence            99999999999975 56677899999999999999999999999999999999987533                     


Q ss_pred             eEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEc
Q 008467          371 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWS  450 (564)
Q Consensus       371 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~  450 (564)
                                          +...+.+|...+.+++|+|+|+++++|++|.+++|||...++...+|..|.+.+.++.|+
T Consensus       146 --------------------c~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~h  205 (825)
T KOG0267|consen  146 --------------------CSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFH  205 (825)
T ss_pred             --------------------ceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccC
Confidence                                345677888899999999999999999999999999999999999999999999999988


Q ss_pred             cCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCC
Q 008467          451 PTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK  514 (564)
Q Consensus       451 p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg  514 (564)
                      |..         .++++||.|++|++||+++-+.+-........|.+++|+|+|+.+++|-...
T Consensus       206 p~e---------~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  206 PLE---------VLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             chh---------hhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence            865         3799999999999999998888887777788999999999999998886554

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.91  E-value=7.3e-23  Score=187.41  Aligned_cols=256  Identities=23%  Similarity=0.427  Sum_probs=182.4

Q ss_pred             ccCCccceEEEEECCCC--CEEEEEECCCcEEEEeCCCCCCCC-CCCC--CCceEEEEEeeccccccCCCCeEEEEECCC
Q 008467          212 LEGHTSEVCACAWSPAG--SLLASGSGDSTARIWTIADGTSNG-GAQN--GPLNVLVLKHVKGRTNEKSKDVTTLDWNGE  286 (564)
Q Consensus       212 l~~h~~~V~~~~~sp~~--~~lasgs~D~~i~iW~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~  286 (564)
                      ..+|.+.|+.+.-++-+  .+.|+=+..|.+.||++....... ..+.  .......+..+    ..|...=..|+|||-
T Consensus       147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~----~ghk~EGy~LdWSp~  222 (440)
T KOG0302|consen  147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTF----NGHKGEGYGLDWSPI  222 (440)
T ss_pred             ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEe----cccCccceeeecccc
Confidence            34677788877777754  577777889999999986422110 0000  00000011112    233455678999993


Q ss_pred             C-CEEEEEeCCCeEEEEECC-Ccee---EeecCCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCcceeEEEeecccC
Q 008467          287 G-TLLATGSYDGQARIWSTN-GDLK---CTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP  360 (564)
Q Consensus       287 g-~~l~sg~~dg~i~vw~~~-~~~~---~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~  360 (564)
                      . -.|+||.--+.|++|... |...   ..+.+|+.+|-.|+|||.. ..|+|||.||+|+|||++.+.-          
T Consensus       223 ~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~----------  292 (440)
T KOG0302|consen  223 KTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK----------  292 (440)
T ss_pred             cccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc----------
Confidence            2 247788888999999854 3322   2466799999999999975 5688999999999999987631          


Q ss_pred             eEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCC---Ceeeeec
Q 008467          361 TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ---DKYVHDL  437 (564)
Q Consensus       361 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~---~~~~~~~  437 (564)
                                                   ++....+.|.+.|+.|.|+....+||+|++||+++|||+++   +.++..|
T Consensus       293 -----------------------------~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~f  343 (440)
T KOG0302|consen  293 -----------------------------KAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATF  343 (440)
T ss_pred             -----------------------------cceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeE
Confidence                                         12223367999999999999999999999999999999874   5678899


Q ss_pred             ccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-------------------EEEEEeCCCCCEEEE
Q 008467          438 REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-------------------LLYSLNGHREPVYSL  498 (564)
Q Consensus       438 ~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-------------------~~~~~~~h~~~i~~~  498 (564)
                      +.|..+|++|.|+|....        .|++++.|..|.|||+..-.                   +++.-.+ ...|..+
T Consensus       344 k~Hk~pItsieW~p~e~s--------~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqG-Qke~Kev  414 (440)
T KOG0302|consen  344 KYHKAPITSIEWHPHEDS--------VIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQG-QKEVKEV  414 (440)
T ss_pred             EeccCCeeEEEeccccCc--------eEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecc-hhHhhhh
Confidence            999999999999997642        68888999999999975311                   2222222 2357778


Q ss_pred             EEcCCC-CEEEEEeCCCcEEEEe
Q 008467          499 AFSPTG-EYLASGSLDKSMHIWS  520 (564)
Q Consensus       499 ~~spdg-~~lasgs~dg~i~iw~  520 (564)
                      .|++.- -+|++.+.|| +.||.
T Consensus       415 hWH~QiPG~lvsTa~dG-fnVfk  436 (440)
T KOG0302|consen  415 HWHRQIPGLLVSTAIDG-FNVFK  436 (440)
T ss_pred             eeccCCCCeEEEecccc-eeEEE
Confidence            899874 5778888888 55664

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=2.8e-22  Score=188.65  Aligned_cols=263  Identities=21%  Similarity=0.351  Sum_probs=203.5

Q ss_pred             EEeCC-CeEEEEECC-CceeEeecCC-CCCEEEEEeCCCCCEEEEeeCC-CcEEEEECCCcceeEEEeecccCeEEEEcC
Q 008467          292 TGSYD-GQARIWSTN-GDLKCTLSKH-KGPIFSLKWNKKGDYLLTGSCD-KTAIVWDVKTEEWKQQFEFHSGPTLDVDWR  367 (564)
Q Consensus       292 sg~~d-g~i~vw~~~-~~~~~~~~~h-~~~V~~l~~~~~~~~l~s~s~D-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  367 (564)
                      +++.| ..+.+||.. |....++.+- ...-.++..- .+.|++++... ..+.+|.+.......+...-.+++.++.-.
T Consensus        12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~   90 (476)
T KOG0646|consen   12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASS   90 (476)
T ss_pred             ccCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecC
Confidence            33444 458888865 3333334332 1111111111 23567766554 468899887665555555566788888888


Q ss_pred             CCceEEEEe-CCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCC---------CCeeeeec
Q 008467          368 NNVSFATSS-TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK---------QDKYVHDL  437 (564)
Q Consensus       368 ~~~~~~~~~-~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~---------~~~~~~~~  437 (564)
                      +...|+.++ -.+.+|+|.+.++..+..+.+|-..|+|+.|+-||.+|+|||.||.|.+|++.         +-++.+.|
T Consensus        91 n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f  170 (476)
T KOG0646|consen   91 NLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIF  170 (476)
T ss_pred             CCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeee
Confidence            887777766 89999999999999999999999999999999999999999999999999862         34677889


Q ss_pred             ccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 008467          438 REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMH  517 (564)
Q Consensus       438 ~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~  517 (564)
                      ..|.-+|+.+...+.|..       ..|+|+|.|.++++||+..|.++.++. ...+|.+++.+|-++.+..|+.+|.|.
T Consensus       171 ~~HtlsITDl~ig~Gg~~-------~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~  242 (476)
T KOG0646|consen  171 SDHTLSITDLQIGSGGTN-------ARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIF  242 (476)
T ss_pred             ccCcceeEEEEecCCCcc-------ceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEE
Confidence            999999999988776531       268999999999999999999988876 456899999999999999999999999


Q ss_pred             EEeCCCCe----------------EEEEEecC---CCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          518 IWSLKEGK----------------IVKTYTGN---GGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       518 iw~~~~~~----------------~~~~~~~~---~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      +.++....                ....+.++   ..|++++.+.||+.|++|..||.|+|||+.
T Consensus       243 ~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~  307 (476)
T KOG0646|consen  243 QNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIY  307 (476)
T ss_pred             eeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence            88875322                12233332   369999999999999999999999999974

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.6e-21  Score=191.29  Aligned_cols=280  Identities=20%  Similarity=0.364  Sum_probs=214.1

Q ss_pred             CccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEe
Q 008467          215 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS  294 (564)
Q Consensus       215 h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~  294 (564)
                      -..+|.++||+.+.+.||.+-.||.|.||++..+-            .......+   +....|.+++|+ ++..|++.+
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w------------~~~~vi~g---~~drsIE~L~W~-e~~RLFS~g   87 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNW------------FLEPVIHG---PEDRSIESLAWA-EGGRLFSSG   87 (691)
T ss_pred             eccceEEEEEeccCCceeeeccCCcEEEEccCCCc------------eeeEEEec---CCCCceeeEEEc-cCCeEEeec
Confidence            34689999999999999999999999999986531            11111122   446789999999 455677889


Q ss_pred             CCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEE
Q 008467          295 YDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA  373 (564)
Q Consensus       295 ~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (564)
                      .+|.|.-||+. ++.+..+....++|++++.+|.++.++.|+.||.+...+...+.....                    
T Consensus        88 ~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~--------------------  147 (691)
T KOG2048|consen   88 LSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYK--------------------  147 (691)
T ss_pred             CCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEE--------------------
Confidence            99999999974 567777888889999999999999999999999777766655432211                    


Q ss_pred             EEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeec-----cc---ccccEE
Q 008467          374 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL-----RE---HSKEIY  445 (564)
Q Consensus       374 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~-----~~---~~~~i~  445 (564)
                                         ..|...++.|.+++|+|++..||+|+.||.|++||..++..++..     +.   ...-|+
T Consensus       148 -------------------r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVW  208 (691)
T KOG2048|consen  148 -------------------RSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVW  208 (691)
T ss_pred             -------------------eecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEE
Confidence                               122233578999999999999999999999999999988776521     11   122356


Q ss_pred             EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 008467          446 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK  525 (564)
Q Consensus       446 ~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~  525 (564)
                      ++.+-.++          .|++|...|+|++||...+.++.....|...|.+++-++++.+++++|.|+.|.-|...+.+
T Consensus       209 Sv~~Lrd~----------tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~  278 (691)
T KOG2048|consen  209 SVLFLRDS----------TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNK  278 (691)
T ss_pred             EEEEeecC----------cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCc
Confidence            66665544          58999999999999999999999999999999999999999999999999999999887664


Q ss_pred             EEEE----Eec-CCCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467          526 IVKT----YTG-NGGIFEVCWNKEGDKIAACFANHTVCVLD  561 (564)
Q Consensus       526 ~~~~----~~~-~~~i~~~~w~~~g~~la~~~~~~~v~v~~  561 (564)
                      -...    ... ...+-+++-.+.  .|.+|+.|..++|--
T Consensus       279 ~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~  317 (691)
T KOG2048|consen  279 SEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICS  317 (691)
T ss_pred             cceeeeccccCCcccceeeeeecc--eEEecceeeEEEEcc
Confidence            3111    111 224556665544  777777777776643

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=7.7e-22  Score=176.26  Aligned_cols=243  Identities=23%  Similarity=0.400  Sum_probs=189.7

Q ss_pred             ecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC--cc--eeEEEeecccCeEEEEcCC---CceEEEEeCCCeEEEE
Q 008467          312 LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT--EE--WKQQFEFHSGPTLDVDWRN---NVSFATSSTDNMIYVC  384 (564)
Q Consensus       312 ~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~--~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~i~~~  384 (564)
                      -.+|..-|.++.|.+.|+++++||.|++++|||.+.  +.  +...+..|.+.+..+.|..   ...+++|+.|+++.+|
T Consensus         9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW   88 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW   88 (361)
T ss_pred             ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence            357889999999999999999999999999999643  33  4556889999999999964   3578999999999999


Q ss_pred             EcCCC---------ceeeEecCCCcceEEEEECCC--CCEEEEEeCCCcEEEEeCC------CCeeeeecc-------cc
Q 008467          385 KIGEN---------RPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKIWNMK------QDKYVHDLR-------EH  440 (564)
Q Consensus       385 ~~~~~---------~~~~~~~~h~~~i~~v~~~~~--~~~las~s~dg~i~iwd~~------~~~~~~~~~-------~~  440 (564)
                      .-...         ....++....+.|+.++|.|.  |-.+|+++.||.+|||+.-      .....++++       .+
T Consensus        89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~  168 (361)
T KOG2445|consen   89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN  168 (361)
T ss_pred             eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence            86321         123456666788999999985  5578999999999999753      333444454       46


Q ss_pred             cccEEEEEEccCCCCCCCCCCcEEEEEEeCC-----CeEEEEeCCCC----eEEEEEeCCCCCEEEEEEcCCC----CEE
Q 008467          441 SKEIYTIRWSPTGSGTNNPNQQLILASASFD-----STVKLWDVELG----KLLYSLNGHREPVYSLAFSPTG----EYL  507 (564)
Q Consensus       441 ~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~----~~~~~~~~h~~~i~~~~~spdg----~~l  507 (564)
                      ..+..|+.|+|.-.      ...+||.|+.+     +.++||....+    ..+.++.+|..||++|+|.|+-    ..|
T Consensus       169 ~~~~~CvsWn~sr~------~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~l  242 (361)
T KOG2445|consen  169 KQPCFCVSWNPSRM------HEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLL  242 (361)
T ss_pred             cCcceEEeeccccc------cCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeE
Confidence            67889999996432      22367888766     47899975432    3456788999999999999973    468


Q ss_pred             EEEeCCCcEEEEeCCCC--------------------eEEEEEec-CCCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467          508 ASGSLDKSMHIWSLKEG--------------------KIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVLD  561 (564)
Q Consensus       508 asgs~dg~i~iw~~~~~--------------------~~~~~~~~-~~~i~~~~w~~~g~~la~~~~~~~v~v~~  561 (564)
                      |+|+.|| |+||+++..                    +++..+.. ++.+..++|+-.|..|++.+.||.|++|-
T Consensus       243 AvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWk  316 (361)
T KOG2445|consen  243 AVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWK  316 (361)
T ss_pred             EEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehh
Confidence            9999999 999998731                    12344444 45799999999999999999999999984

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.91  E-value=1.1e-21  Score=174.03  Aligned_cols=276  Identities=21%  Similarity=0.358  Sum_probs=199.1

Q ss_pred             CCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCc-----------eeE-----eecCCCCCEEEEEeCCCC-CEEEEee
Q 008467          274 KSKDVTTLDWNG-EGTLLATGSYDGQARIWSTNGD-----------LKC-----TLSKHKGPIFSLKWNKKG-DYLLTGS  335 (564)
Q Consensus       274 ~~~~V~~l~~s~-~g~~l~sg~~dg~i~vw~~~~~-----------~~~-----~~~~h~~~V~~l~~~~~~-~~l~s~s  335 (564)
                      |.+.|.++...+ .|+++++|+.||.|.+||+...           .++     .-.+|+-.|.++.|-|-. -.|.++|
T Consensus        42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssS  121 (397)
T KOG4283|consen   42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSS  121 (397)
T ss_pred             CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeeccc
Confidence            446688888777 7899999999999999997431           112     124688899999999854 4678899


Q ss_pred             CCCcEEEEECCCcceeEEEeecccCeEEEEcC----CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCC
Q 008467          336 CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR----NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG  411 (564)
Q Consensus       336 ~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~  411 (564)
                      .|.++++||..+-+..-.|.+.. .++.-.|.    ....++++..+-.|++||+..+....++.||.+.|.++.|+|..
T Consensus       122 FDhtlKVWDtnTlQ~a~~F~me~-~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~  200 (397)
T KOG4283|consen  122 FDHTLKVWDTNTLQEAVDFKMEG-KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSS  200 (397)
T ss_pred             ccceEEEeecccceeeEEeecCc-eeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCc
Confidence            99999999999877665555432 23333332    24567788888899999999999999999999999999999988


Q ss_pred             CE-EEEEeCCCcEEEEeCCCC-eeeeec--------------ccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEE
Q 008467          412 SL-LASCSDDVTAKIWNMKQD-KYVHDL--------------REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVK  475 (564)
Q Consensus       412 ~~-las~s~dg~i~iwd~~~~-~~~~~~--------------~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~  475 (564)
                      .+ |||||.||.||+||++.. .+...+              .+|.+.+..++|..++.         ++++++.|..++
T Consensus       201 e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~---------~l~~~gtd~r~r  271 (397)
T KOG4283|consen  201 EWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR---------YLASCGTDDRIR  271 (397)
T ss_pred             eeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccch---------hhhhccCccceE
Confidence            76 789999999999998753 222222              35777889999998875         689999999999


Q ss_pred             EEeCCCCeEEEE-E--eCCC---CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCC-CEEEEEEccCCCEE
Q 008467          476 LWDVELGKLLYS-L--NGHR---EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKI  548 (564)
Q Consensus       476 iwd~~~~~~~~~-~--~~h~---~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~-~i~~~~w~~~g~~l  548 (564)
                      +|+..+|+.... +  ..|.   .+-..+. +-+...++---.++.+.++++-.|..+..+..+. .|...++.|+=+.+
T Consensus       272 ~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~  350 (397)
T KOG4283|consen  272 VWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQC  350 (397)
T ss_pred             EeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhh
Confidence            999988764221 1  0111   1111122 3344444444455777788877777777776653 35566677776777


Q ss_pred             EEEEcCCcEEEE
Q 008467          549 AACFANHTVCVL  560 (564)
Q Consensus       549 a~~~~~~~v~v~  560 (564)
                      .++..|+.+.-|
T Consensus       351 ~tg~~d~ni~~w  362 (397)
T KOG4283|consen  351 FTGDMNGNIYMW  362 (397)
T ss_pred             hccccCCccccc
Confidence            777777666544

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.90  E-value=2.3e-22  Score=184.14  Aligned_cols=238  Identities=25%  Similarity=0.538  Sum_probs=180.5

Q ss_pred             CCCCeEEEEECC--CCCEEEEEeCCCeEEEEECCC-----------------ceeEeecCCCCCEEEEEeCCCC-CEEEE
Q 008467          274 KSKDVTTLDWNG--EGTLLATGSYDGQARIWSTNG-----------------DLKCTLSKHKGPIFSLKWNKKG-DYLLT  333 (564)
Q Consensus       274 ~~~~V~~l~~s~--~g~~l~sg~~dg~i~vw~~~~-----------------~~~~~~~~h~~~V~~l~~~~~~-~~l~s  333 (564)
                      +.+.+..+.-++  +..+.++-+..|.|.||+...                 ..+.++.+|.+.=++|+|||-- ..|+|
T Consensus       150 h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Lls  229 (440)
T KOG0302|consen  150 HYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLS  229 (440)
T ss_pred             cccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccccc
Confidence            344455554444  445666667789999998532                 2345778899999999999943 34888


Q ss_pred             eeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCC-C
Q 008467          334 GSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-S  412 (564)
Q Consensus       334 ~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~-~  412 (564)
                      |..-+.|++|...++.|.-                                  +    ...|.+|+..|..++|||.. .
T Consensus       230 GDc~~~I~lw~~~~g~W~v----------------------------------d----~~Pf~gH~~SVEDLqWSptE~~  271 (440)
T KOG0302|consen  230 GDCVKGIHLWEPSTGSWKV----------------------------------D----QRPFTGHTKSVEDLQWSPTEDG  271 (440)
T ss_pred             CccccceEeeeeccCceee----------------------------------c----CccccccccchhhhccCCccCc
Confidence            8888999999887776432                                  1    12467899999999999975 5


Q ss_pred             EEEEEeCCCcEEEEeCCCC---eeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC---CeEEE
Q 008467          413 LLASCSDDVTAKIWNMKQD---KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL---GKLLY  486 (564)
Q Consensus       413 ~las~s~dg~i~iwd~~~~---~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~---~~~~~  486 (564)
                      .|||||.||+|+|||++.+   .++ ..++|.+.|..|.|+..-.         +||+|+.||+++|||++.   ++++.
T Consensus       272 vfaScS~DgsIrIWDiRs~~~~~~~-~~kAh~sDVNVISWnr~~~---------lLasG~DdGt~~iwDLR~~~~~~pVA  341 (440)
T KOG0302|consen  272 VFASCSCDGSIRIWDIRSGPKKAAV-STKAHNSDVNVISWNRREP---------LLASGGDDGTLSIWDLRQFKSGQPVA  341 (440)
T ss_pred             eEEeeecCceEEEEEecCCCcccee-EeeccCCceeeEEccCCcc---------eeeecCCCceEEEEEhhhccCCCcce
Confidence            7899999999999999987   333 3488999999999986542         799999999999999984   67889


Q ss_pred             EEeCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCe-------------------EEEEEecCCCEEEEEEccCCC
Q 008467          487 SLNGHREPVYSLAFSPT-GEYLASGSLDKSMHIWSLKEGK-------------------IVKTYTGNGGIFEVCWNKEGD  546 (564)
Q Consensus       487 ~~~~h~~~i~~~~~spd-g~~lasgs~dg~i~iw~~~~~~-------------------~~~~~~~~~~i~~~~w~~~g~  546 (564)
                      .++-|..||++|.|+|. ...|+++|.|.+|.|||+.--.                   ++....+...+-+|.|++.-.
T Consensus       342 ~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiP  421 (440)
T KOG0302|consen  342 TFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIP  421 (440)
T ss_pred             eEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCC
Confidence            99999999999999996 4678888999999999985211                   222333444567899999864


Q ss_pred             -EEEEEEcCCcEEEE
Q 008467          547 -KIAACFANHTVCVL  560 (564)
Q Consensus       547 -~la~~~~~~~v~v~  560 (564)
                       +|++...+| ++||
T Consensus       422 G~lvsTa~dG-fnVf  435 (440)
T KOG0302|consen  422 GLLVSTAIDG-FNVF  435 (440)
T ss_pred             CeEEEecccc-eeEE
Confidence             555555665 4444

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=9.6e-22  Score=184.60  Aligned_cols=284  Identities=17%  Similarity=0.257  Sum_probs=217.8

Q ss_pred             ccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC-EEEEEe
Q 008467          216 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT-LLATGS  294 (564)
Q Consensus       216 ~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~l~sg~  294 (564)
                      .+.|+++.|||...+|++|+.|++++||.+.. +.+.     .+..+.+         ...+|.+.+|.|+|. .+++++
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDG-k~N~-----~lqS~~l---------~~fPi~~a~f~p~G~~~i~~s~  277 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDG-KVNP-----KLQSIHL---------EKFPIQKAEFAPNGHSVIFTSG  277 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecC-ccCh-----hheeeee---------ccCccceeeecCCCceEEEecc
Confidence            36899999999999999999999999999853 2221     1111111         245799999999999 899999


Q ss_pred             CCCeEEEEECCCceeE---eecCCC-CCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCC-C
Q 008467          295 YDGQARIWSTNGDLKC---TLSKHK-GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-N  369 (564)
Q Consensus       295 ~dg~i~vw~~~~~~~~---~~~~h~-~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~  369 (564)
                      .....+.||+......   .+.++. ..+.....+|++++|+..+..|-|.+-...+++++..+... +.+.++.|.. .
T Consensus       278 rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie-G~v~~~~fsSds  356 (514)
T KOG2055|consen  278 RRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE-GVVSDFTFSSDS  356 (514)
T ss_pred             cceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec-cEEeeEEEecCC
Confidence            9999999998643322   233443 34566777999999999999999999999999988877653 4566777754 4


Q ss_pred             ceEEEEeCCCeEEEEEcCCCceeeEecCCCc-ceEEEEECCCCCEEEEEeCCCcEEEEeCCC------Ceeeeecccccc
Q 008467          370 VSFATSSTDNMIYVCKIGENRPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDVTAKIWNMKQ------DKYVHDLREHSK  442 (564)
Q Consensus       370 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~-~i~~v~~~~~~~~las~s~dg~i~iwd~~~------~~~~~~~~~~~~  442 (564)
                      ..+++++.+|.|++|++.....+..|....+ .-++++.++++.+||+||+.|.|.|||.++      .+++..+..-..
T Consensus       357 k~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt  436 (514)
T KOG2055|consen  357 KELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTT  436 (514)
T ss_pred             cEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhhe
Confidence            5678888999999999999988888764322 235788889999999999999999999653      355666666677


Q ss_pred             cEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEe---CCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 008467          443 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN---GHREPVYSLAFSPTGEYLASGSLDKSMHIW  519 (564)
Q Consensus       443 ~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~h~~~i~~~~~spdg~~lasgs~dg~i~iw  519 (564)
                      .|.++.|+|+...       +.++|-..+..+|+-.+.+......+.   ..-+.|+|++|||.|.+||.|..+|+|.+|
T Consensus       437 ~Itsl~Fn~d~qi-------LAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~  509 (514)
T KOG2055|consen  437 AITSLQFNHDAQI-------LAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLF  509 (514)
T ss_pred             eeeeeeeCcchhh-------hhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeE
Confidence            8999999998751       234444567889998887655433332   223458999999999999999999999999


Q ss_pred             eCC
Q 008467          520 SLK  522 (564)
Q Consensus       520 ~~~  522 (564)
                      .+.
T Consensus       510 kL~  512 (514)
T KOG2055|consen  510 KLH  512 (514)
T ss_pred             eec
Confidence            874

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.90  E-value=5.9e-22  Score=183.33  Aligned_cols=294  Identities=21%  Similarity=0.408  Sum_probs=189.3

Q ss_pred             cceEEEEECCCCC-EEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeC
Q 008467          217 SEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY  295 (564)
Q Consensus       217 ~~V~~~~~sp~~~-~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~  295 (564)
                      .+|..+.|.++.. .||||+.|..||||.+..+...+..    ..+..    ......|...|+++.|+|+|++||+|+.
T Consensus        14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~----~~V~y----~s~Ls~H~~aVN~vRf~p~gelLASg~D   85 (434)
T KOG1009|consen   14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD----MKVEY----LSSLSRHTRAVNVVRFSPDGELLASGGD   85 (434)
T ss_pred             CceEEEEeccCcccceecccCccceeeeeeeecCCCCCc----eeEEE----eecccCCcceeEEEEEcCCcCeeeecCC
Confidence            5789999999865 9999999999999998765433211    11111    1223456788999999999999999999


Q ss_pred             CCeEEEEECC--------C---------ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecc
Q 008467          296 DGQARIWSTN--------G---------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS  358 (564)
Q Consensus       296 dg~i~vw~~~--------~---------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~  358 (564)
                      +|.+.+|...        .         ..+..+.+|...|+.++|+|++.++++++.|.++++||+..|.....+..|.
T Consensus        86 ~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~  165 (434)
T KOG1009|consen   86 GGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHE  165 (434)
T ss_pred             CceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccc
Confidence            9999999754        2         1345678899999999999999999999999999999999987766655555


Q ss_pred             cCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecc
Q 008467          359 GPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR  438 (564)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~  438 (564)
                      ..+..++|                                         .|-++++++-|.|...+.++++..+.++...
T Consensus       166 ~yvqgvaw-----------------------------------------Dpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~  204 (434)
T KOG1009|consen  166 HYVQGVAW-----------------------------------------DPLNQYVASKSSDRHPEGFSAKLKQVIKRHG  204 (434)
T ss_pred             cccceeec-----------------------------------------chhhhhhhhhccCcccceeeeeeeeeeeeee
Confidence            55555555                                         4444444444444433333322211111000


Q ss_pred             -------------------ccc----ccEEEEEEccCCCCCCCCCCcEEEEEEe--CCCeEEEEeCC-CCeEEEEEeCCC
Q 008467          439 -------------------EHS----KEIYTIRWSPTGSGTNNPNQQLILASAS--FDSTVKLWDVE-LGKLLYSLNGHR  492 (564)
Q Consensus       439 -------------------~~~----~~i~~i~~~p~~~~~~~~~~~~~l~s~s--~dg~i~iwd~~-~~~~~~~~~~h~  492 (564)
                                         .|.    .-...++|+|+|.....|.+.  +-++.  .-++.++++-. ..++...+.+-.
T Consensus       205 ~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~--~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~  282 (434)
T KOG1009|consen  205 LDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGL--FKVGGGVFRNTSYVFSRKDLKRPAARLPSPK  282 (434)
T ss_pred             eeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccce--eeeCCceeeceeEeeccccccCceeecCCCC
Confidence                               011    112446777877522222110  00000  01223344322 123344455555


Q ss_pred             CCEEEEEEcC------------------CCCEEEEEeCCCcEEEEeCCCCeEEEEEe--cCCCEEEEEEccCCCEEEEEE
Q 008467          493 EPVYSLAFSP------------------TGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIAACF  552 (564)
Q Consensus       493 ~~i~~~~~sp------------------dg~~lasgs~dg~i~iw~~~~~~~~~~~~--~~~~i~~~~w~~~g~~la~~~  552 (564)
                      .+...+.|+|                  -+-.+|.++.+ .|+|||.++-..+....  +-..|++++|++||+.|++.+
T Consensus       283 k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~-svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS  361 (434)
T KOG1009|consen  283 KPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKN-SVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSS  361 (434)
T ss_pred             cceEEEEeeeeEEEeccccccccccccccceEEEEeecc-eEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEec
Confidence            5666666654                  23345666655 59999998766544432  235799999999999999999


Q ss_pred             cCCcEEEEEe
Q 008467          553 ANHTVCVLDF  562 (564)
Q Consensus       553 ~~~~v~v~~~  562 (564)
                      .||.+.++.|
T Consensus       362 ~DGyCS~vtf  371 (434)
T KOG1009|consen  362 TDGFCSLVTF  371 (434)
T ss_pred             cCCceEEEEE
Confidence            9998887765

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.90  E-value=7.3e-22  Score=185.24  Aligned_cols=288  Identities=19%  Similarity=0.310  Sum_probs=211.0

Q ss_pred             EccCCccceEEEEECCCC--CEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC-CC
Q 008467          211 ILEGHTSEVCACAWSPAG--SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EG  287 (564)
Q Consensus       211 ~l~~h~~~V~~~~~sp~~--~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g  287 (564)
                      +.+-|..+|++++|+|..  +++|+|..-|.|-+||+.+.....       .-..      ...+|+.+|.++.|+| +-
T Consensus       181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~-------d~v~------~f~~hs~~Vs~l~F~P~n~  247 (498)
T KOG4328|consen  181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK-------DGVY------LFTPHSGPVSGLKFSPANT  247 (498)
T ss_pred             eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCcc-------CceE------EeccCCccccceEecCCCh
Confidence            445688999999999974  689999999999999995221110       0001      1235678999999999 45


Q ss_pred             CEEEEEeCCCeEEEEECCCceeE---eecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEE
Q 008467          288 TLLATGSYDGQARIWSTNGDLKC---TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV  364 (564)
Q Consensus       288 ~~l~sg~~dg~i~vw~~~~~~~~---~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~  364 (564)
                      ..+++.++||+||+-|.++....   .+..-...+.++.|+.+...++.+..=|...+||++++.-              
T Consensus       248 s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s--------------  313 (498)
T KOG4328|consen  248 SQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGS--------------  313 (498)
T ss_pred             hheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCc--------------
Confidence            68999999999999998765433   2222344566778888887788887777888999877531              


Q ss_pred             EcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCe----eeeeccc
Q 008467          365 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQDK----YVHDLRE  439 (564)
Q Consensus       365 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~-~las~s~dg~i~iwd~~~~~----~~~~~~~  439 (564)
                                                ....+.-|...|++++++|... +|||||.|++++|||++.-.    ++.....
T Consensus       314 --------------------------~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~  367 (498)
T KOG4328|consen  314 --------------------------EYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLP  367 (498)
T ss_pred             --------------------------cchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceeccc
Confidence                                      1122344777899999999765 58999999999999987532    2334457


Q ss_pred             ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC----CCeEEEEEeCCC------CCEEEEEEcCCCCEEEE
Q 008467          440 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE----LGKLLYSLNGHR------EPVYSLAFSPTGEYLAS  509 (564)
Q Consensus       440 ~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~----~~~~~~~~~~h~------~~i~~~~~spdg~~las  509 (564)
                      |...|.+..|+|.+.         .|++.+.|..|+|||..    ....+.++. |.      -......|.|+..++++
T Consensus       368 HrrsV~sAyFSPs~g---------tl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~v  437 (498)
T KOG4328|consen  368 HRRSVNSAYFSPSGG---------TLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVV  437 (498)
T ss_pred             ccceeeeeEEcCCCC---------ceEeeccCCceEEeecccccccCCccceee-ccCcccccccchhheeCCCccEEEE
Confidence            999999999999875         48888999999999983    222233332 21      12456789999999999


Q ss_pred             EeCCCcEEEEeCCCCeEEEEEecCC--CEEE-EEEccCCC-EEEEEEcCCcEEEEE
Q 008467          510 GSLDKSMHIWSLKEGKIVKTYTGNG--GIFE-VCWNKEGD-KIAACFANHTVCVLD  561 (564)
Q Consensus       510 gs~dg~i~iw~~~~~~~~~~~~~~~--~i~~-~~w~~~g~-~la~~~~~~~v~v~~  561 (564)
                      |-.-..|-|+|-..++++..+-...  .|.+ ..|+|-+. .+|.+...|.|.||-
T Consensus       438 g~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft  493 (498)
T KOG4328|consen  438 GRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT  493 (498)
T ss_pred             eccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence            9999999999999999888764332  3443 57999998 555556677777773

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.90  E-value=1.7e-21  Score=175.46  Aligned_cols=297  Identities=20%  Similarity=0.398  Sum_probs=207.0

Q ss_pred             eEccCCccceEEEEECC----C-CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEEC
Q 008467          210 TILEGHTSEVCACAWSP----A-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN  284 (564)
Q Consensus       210 ~~l~~h~~~V~~~~~sp----~-~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s  284 (564)
                      .+...|+.+|+.++|++    + -..+||.| ...+.||......          ....++....  ..+......++|+
T Consensus        32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~----------~ir~lq~y~D--~d~~Esfytcsw~   98 (385)
T KOG1034|consen   32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDG----------GIRLLQSYAD--EDHDESFYTCSWS   98 (385)
T ss_pred             ehhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCcc----------ceeeeeeccC--CCCCcceEEEEEE
Confidence            46678999999999996    2 24666655 4578888865321          0111111111  1233456777887


Q ss_pred             CC----CCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCcceeEEEeecc
Q 008467          285 GE----GTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHS  358 (564)
Q Consensus       285 ~~----g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~  358 (564)
                      -+    ..++|.|+.-|.|||.|.. ++....+.+|..+|..++++|.. ++++++|.|.+|++|++++..++..|.   
T Consensus        99 yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG---  175 (385)
T KOG1034|consen   99 YDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG---  175 (385)
T ss_pred             ecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec---
Confidence            54    3578899999999999975 56667889999999999999976 678999999999999999987665442   


Q ss_pred             cCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecc
Q 008467          359 GPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR  438 (564)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~  438 (564)
                                                         -+.||.+.|.++.|+++|.+|+||+.|.++++|++...+.-..+.
T Consensus       176 -----------------------------------G~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE  220 (385)
T KOG1034|consen  176 -----------------------------------GVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLE  220 (385)
T ss_pred             -----------------------------------ccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhh
Confidence                                               246899999999999999999999999999999997443211110


Q ss_pred             cccccEEEEEEccCCCCC-------CCCC-------C---------cEEEEEEeCCCeEEEEeC-CCCe-----------
Q 008467          439 EHSKEIYTIRWSPTGSGT-------NNPN-------Q---------QLILASASFDSTVKLWDV-ELGK-----------  483 (564)
Q Consensus       439 ~~~~~i~~i~~~p~~~~~-------~~~~-------~---------~~~l~s~s~dg~i~iwd~-~~~~-----------  483 (564)
                            .++.|+|++...       .-|.       .         -.+++|-|.++.|..|.. +-++           
T Consensus       221 ------~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~  294 (385)
T KOG1034|consen  221 ------LSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESA  294 (385)
T ss_pred             ------hhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccc
Confidence                  112222222110       0000       0         015778888999999987 2111           


Q ss_pred             --EEEEEeCCCCCEEEEE--EcCCCCEEEEEeCCCcEEEEeCCCCeEE--EEEe---cCCCEEEEEEccCCCEEEEEEcC
Q 008467          484 --LLYSLNGHREPVYSLA--FSPTGEYLASGSLDKSMHIWSLKEGKIV--KTYT---GNGGIFEVCWNKEGDKIAACFAN  554 (564)
Q Consensus       484 --~~~~~~~h~~~i~~~~--~spdg~~lasgs~dg~i~iw~~~~~~~~--~~~~---~~~~i~~~~w~~~g~~la~~~~~  554 (564)
                        .+.++.-....|+-|.  |.|-+++||.|...|.|.+||++.....  .++.   ....|...+|+.||..|++...+
T Consensus       295 ~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd  374 (385)
T KOG1034|consen  295 TTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDD  374 (385)
T ss_pred             eeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCC
Confidence              1223333334566665  5566899999999999999999876542  1222   23458899999999999999999


Q ss_pred             CcEEEEEee
Q 008467          555 HTVCVLDFR  563 (564)
Q Consensus       555 ~~v~v~~~~  563 (564)
                      +.|.-||..
T Consensus       375 ~~Vwrwdrv  383 (385)
T KOG1034|consen  375 GTVWRWDRV  383 (385)
T ss_pred             CcEEEEEee
Confidence            999988864

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.90  E-value=3.1e-19  Score=182.71  Aligned_cols=327  Identities=34%  Similarity=0.635  Sum_probs=254.2

Q ss_pred             EccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEE-CCCCC-
Q 008467          211 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW-NGEGT-  288 (564)
Q Consensus       211 ~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~-s~~g~-  288 (564)
                      .+.+|...+.++.|++.+..++.++.|+.+.+|+...+..            .........   ...+..+.+ ++++. 
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~------------~~~~~~~~~---~~~~~~~~~~~~~~~~  124 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEK------------LIKSLEGLH---DSSVSKLALSSPDGNS  124 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCce------------eEEEEeccC---CCceeeEEEECCCcce
Confidence            4667899999999999999999999999999999875430            011111100   034666666 88887 


Q ss_pred             EEEEEeC-CCeEEEEECCC--ceeEeecCCCCCEEEEEeCCCCCEEEEeeC-CCcEEEEECCCcceeEEEeecccCeEEE
Q 008467          289 LLATGSY-DGQARIWSTNG--DLKCTLSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQQFEFHSGPTLDV  364 (564)
Q Consensus       289 ~l~sg~~-dg~i~vw~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~~~~~  364 (564)
                      .++..+. |+.+++|+...  .....+..|...|..++|+|++.++++++. |+.+++|++..+.....+..|...+..+
T Consensus       125 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  204 (466)
T COG2319         125 ILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSL  204 (466)
T ss_pred             EEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEE
Confidence            5555444 99999999885  677788999999999999999998888885 9999999999888888888888999999


Q ss_pred             EcCCCc--eEEEEeCCCeEEEEEcCCCceee-EecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCee-eeecccc
Q 008467          365 DWRNNV--SFATSSTDNMIYVCKIGENRPIK-TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY-VHDLREH  440 (564)
Q Consensus       365 ~~~~~~--~~~~~~~d~~i~~~~~~~~~~~~-~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~-~~~~~~~  440 (564)
                      .|.++.  .+++++.|+.+.+|+......+. .+.+|.... ...|+|++.++++++.|+.+++|+...... +..+..|
T Consensus       205 ~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  283 (466)
T COG2319         205 AFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH  283 (466)
T ss_pred             EEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecC
Confidence            998655  34444899999999888667776 688888875 448999999999999999999999986664 4444678


Q ss_pred             cccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEe--CCCCCEEEEEEcCCCCEEEEE-eCCCcEE
Q 008467          441 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN--GHREPVYSLAFSPTGEYLASG-SLDKSMH  517 (564)
Q Consensus       441 ~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~h~~~i~~~~~spdg~~lasg-s~dg~i~  517 (564)
                      ...+.++.|.|.+.         .+++++.|+.+++||...........  .|...+..+.|++++..++.+ ..|+.+.
T Consensus       284 ~~~v~~~~~~~~~~---------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  354 (466)
T COG2319         284 SSSVLSVAFSPDGK---------LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIR  354 (466)
T ss_pred             CccEEEEEECCCCC---------EEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEE
Confidence            88999999998543         45568888999999998887766665  787789999994443566665 6889999


Q ss_pred             EEeCCCCeEEEEEecCCCEEEEEEccCCCEEEE-EEcCCcEEEEEee
Q 008467          518 IWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAA-CFANHTVCVLDFR  563 (564)
Q Consensus       518 iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~-~~~~~~v~v~~~~  563 (564)
                      +|+...............+..+.|.+ ...+.. +..++.+.+|+.+
T Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  400 (466)
T COG2319         355 LWDLRTGKPLKTLEGHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLS  400 (466)
T ss_pred             eeecCCCceeEEecCCceEEEEEECC-CCCEEEEecCCCceEEEecc
Confidence            99998877333333333378999999 544444 6788899999875

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=6.6e-23  Score=212.51  Aligned_cols=243  Identities=22%  Similarity=0.455  Sum_probs=199.2

Q ss_pred             CCCeEEEEECCCCCE----EEEEeCCCeEEEEECCC-------ceeEeecCCCCCEEEEEeCCCCC-EEEEeeCCCcEEE
Q 008467          275 SKDVTTLDWNGEGTL----LATGSYDGQARIWSTNG-------DLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIV  342 (564)
Q Consensus       275 ~~~V~~l~~s~~g~~----l~sg~~dg~i~vw~~~~-------~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~i  342 (564)
                      ......|+|.+.|..    ||.|..||.|.+|+...       ..+.+...|+++|.+|.|++... .|++|+.||.|.|
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i  143 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI  143 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence            345788999987765    89999999999999653       23456788999999999999765 8999999999999


Q ss_pred             EECCCcceeEEEe--ecccCeEEEEcCCC--ceEEEEeCCCeEEEEEcCCCceeeEecCCCc--ceEEEEECCCC-CEEE
Q 008467          343 WDVKTEEWKQQFE--FHSGPTLDVDWRNN--VSFATSSTDNMIYVCKIGENRPIKTFAGHQG--EVNCVKWDPTG-SLLA  415 (564)
Q Consensus       343 wd~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~--~i~~v~~~~~~-~~la  415 (564)
                      ||+..-+..-.+.  .....|..+.|...  ..|++++.++.+.+||++..+++..+..|.+  .+..++|+|+. ..|+
T Consensus       144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~  223 (1049)
T KOG0307|consen  144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL  223 (1049)
T ss_pred             eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence            9998643322221  12345788899754  4678889999999999999999988877665  47789999987 4466


Q ss_pred             EEeCCC---cEEEEeCCCC-eeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCC
Q 008467          416 SCSDDV---TAKIWNMKQD-KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH  491 (564)
Q Consensus       416 s~s~dg---~i~iwd~~~~-~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h  491 (564)
                      ++++|.   .|.+||++.- .+++.+..|...|.++.|++.+.        .+|+|++.|+.|.+|+..+++.+..+...
T Consensus       224 ~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~--------~lllSsgkD~~ii~wN~~tgEvl~~~p~~  295 (1049)
T KOG0307|consen  224 VASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDP--------RLLLSSGKDNRIICWNPNTGEVLGELPAQ  295 (1049)
T ss_pred             eecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCc--------hhhhcccCCCCeeEecCCCceEeeecCCC
Confidence            676654   6899998753 45677889999999999998763        37899999999999999999999999887


Q ss_pred             CCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCe
Q 008467          492 REPVYSLAFSPTGE-YLASGSLDKSMHIWSLKEGK  525 (564)
Q Consensus       492 ~~~i~~~~~spdg~-~lasgs~dg~i~iw~~~~~~  525 (564)
                      ...+..+.|+|... .+++++.||.|-||.+..+.
T Consensus       296 ~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  296 GNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             CcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            88999999999875 78899999999999997654

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.89  E-value=3.3e-21  Score=173.28  Aligned_cols=281  Identities=25%  Similarity=0.439  Sum_probs=203.8

Q ss_pred             EEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEEC-------CCCCEEEE
Q 008467          220 CACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN-------GEGTLLAT  292 (564)
Q Consensus       220 ~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s-------~~g~~l~s  292 (564)
                      ..|.|||||+.|++-+.|..+++|++........+ ..+...  ..+..-+ ......|...+|-       |+..++++
T Consensus        53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~-~~~~~~--~~~~~~r-~~eg~tvydy~wYs~M~s~qP~t~l~a~  128 (406)
T KOG2919|consen   53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKA-DGPLNF--SKHLSYR-YQEGETVYDYCWYSRMKSDQPSTNLFAV  128 (406)
T ss_pred             ccceeCCCCceEEeecccCeeeEEecChhhcccCC-CCcccc--ccceeEE-eccCCEEEEEEeeeccccCCCccceeee
Confidence            36899999999999999999999998653221111 111110  0010001 1123457788885       67889999


Q ss_pred             EeCCCeEEEEEC-CCceeEeecC--CCC---CEEEEEeCCCCCEEEEeeCCCcEEEEEC-CCcceeEEE---ee----cc
Q 008467          293 GSYDGQARIWST-NGDLKCTLSK--HKG---PIFSLKWNKKGDYLLTGSCDKTAIVWDV-KTEEWKQQF---EF----HS  358 (564)
Q Consensus       293 g~~dg~i~vw~~-~~~~~~~~~~--h~~---~V~~l~~~~~~~~l~s~s~D~~v~iwd~-~~~~~~~~~---~~----~~  358 (564)
                      .+.+.-|++||. .|++++.+..  |..   +..+|+|+|+|.+|++|. .++|+++|+ +.|..-..+   ..    ..
T Consensus       129 ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~  207 (406)
T KOG2919|consen  129 SSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQK  207 (406)
T ss_pred             ccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhccccccc
Confidence            999999999995 5777776654  333   347899999999998764 579999998 555322211   11    12


Q ss_pred             cCeEEEEcC--CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC-CCcEEEEeCCCCe-ee
Q 008467          359 GPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAKIWNMKQDK-YV  434 (564)
Q Consensus       359 ~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~-dg~i~iwd~~~~~-~~  434 (564)
                      +.+.++.+.  +...++.++-...+-++.-....|+..+-||.+.|+.++|.++|+.|.+|+. |-.|.+||++..+ ++
T Consensus       208 giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv  287 (406)
T KOG2919|consen  208 GIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPV  287 (406)
T ss_pred             ceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchh
Confidence            233344443  4456777777788888888888999999999999999999999999999986 7899999998643 45


Q ss_pred             eecccccc-cEEEEEEc--cCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-CeEEEEEeCCCCCEEEEEEcCCCCEEEEE
Q 008467          435 HDLREHSK-EIYTIRWS--PTGSGTNNPNQQLILASASFDSTVKLWDVEL-GKLLYSLNGHREPVYSLAFSPTGEYLASG  510 (564)
Q Consensus       435 ~~~~~~~~-~i~~i~~~--p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~h~~~i~~~~~spdg~~lasg  510 (564)
                      ..+..|.. .-..|-|.  |.+.         +|++|+.||.|++||+.. |..+..+..|...++.++++|--.++|++
T Consensus       288 ~~L~rhv~~TNQRI~FDld~~~~---------~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilats  358 (406)
T KOG2919|consen  288 YALERHVGDTNQRILFDLDPKGE---------ILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATS  358 (406)
T ss_pred             hhhhhhccCccceEEEecCCCCc---------eeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeec
Confidence            55655654 33445554  3332         799999999999999987 67677788899999999999998888888


Q ss_pred             eCCC
Q 008467          511 SLDK  514 (564)
Q Consensus       511 s~dg  514 (564)
                      +...
T Consensus       359 sGqr  362 (406)
T KOG2919|consen  359 SGQR  362 (406)
T ss_pred             cCce
Confidence            7654

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=5e-21  Score=171.40  Aligned_cols=234  Identities=16%  Similarity=0.256  Sum_probs=185.9

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEE
Q 008467          275 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF  354 (564)
Q Consensus       275 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  354 (564)
                      ...|+++.|+|.+..|+.++.||.+++|+.........-.|..|+.+++|.+ ...+++|+.||.|+.+|+.++..    
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~----   87 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE----   87 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcc----
Confidence            4679999999999999999999999999987665544557999999999997 46799999999999999987641    


Q ss_pred             eecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeee
Q 008467          355 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV  434 (564)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~  434 (564)
                                                            ..+..|...|.|+.+++-...+++||.|++|++||.+....+
T Consensus        88 --------------------------------------~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~  129 (323)
T KOG1036|consen   88 --------------------------------------DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVV  129 (323)
T ss_pred             --------------------------------------eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccc
Confidence                                                  123458889999999998889999999999999999875555


Q ss_pred             eecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEe--CCCCCEEEEEEcCCCCEEEEEeC
Q 008467          435 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN--GHREPVYSLAFSPTGEYLASGSL  512 (564)
Q Consensus       435 ~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~h~~~i~~~~~spdg~~lasgs~  512 (564)
                      ..+.. ...|+++...-+           .|+.|..|..|.+||+++........  ...-.+.+|++-|++.-.|++|-
T Consensus       130 ~~~d~-~kkVy~~~v~g~-----------~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi  197 (323)
T KOG1036|consen  130 GTFDQ-GKKVYCMDVSGN-----------RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI  197 (323)
T ss_pred             ccccc-CceEEEEeccCC-----------EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee
Confidence            44433 347888765432           57888899999999999765544221  22346899999999999999999


Q ss_pred             CCcEEEEeCCCC----eEEEEEecC----------CCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          513 DKSMHIWSLKEG----KIVKTYTGN----------GGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       513 dg~i~iw~~~~~----~~~~~~~~~----------~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      ||+|.+=.+.+.    +..-.|..+          -+|++++|+|--..+|+|+.||.|.+||..
T Consensus       198 eGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~  262 (323)
T KOG1036|consen  198 EGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLF  262 (323)
T ss_pred             cceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCc
Confidence            999987666554    222233321          247899999999999999999999999974

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.88  E-value=7.4e-22  Score=186.81  Aligned_cols=237  Identities=21%  Similarity=0.374  Sum_probs=195.1

Q ss_pred             cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC
Q 008467          217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD  296 (564)
Q Consensus       217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d  296 (564)
                      .-|..|..+|||+.|++|+.-.++.|||+......               .+.......-...+++.|||.++.+++..|
T Consensus       466 nyiRSckL~pdgrtLivGGeastlsiWDLAapTpr---------------ikaeltssapaCyALa~spDakvcFsccsd  530 (705)
T KOG0639|consen  466 NYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPR---------------IKAELTSSAPACYALAISPDAKVCFSCCSD  530 (705)
T ss_pred             cceeeeEecCCCceEEeccccceeeeeeccCCCcc---------------hhhhcCCcchhhhhhhcCCccceeeeeccC
Confidence            34688999999999999999999999999764321               111111122346678999999999999999


Q ss_pred             CeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEE
Q 008467          297 GQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATS  375 (564)
Q Consensus       297 g~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (564)
                      |.|+|||... .++..|.+|+..+.||..+++|..|-||+-|++||.||++++...++..                    
T Consensus       531 GnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd--------------------  590 (705)
T KOG0639|consen  531 GNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD--------------------  590 (705)
T ss_pred             CcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh--------------------
Confidence            9999999865 4667899999999999999999999999999999999999875433221                    


Q ss_pred             eCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCC
Q 008467          376 STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSG  455 (564)
Q Consensus       376 ~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~  455 (564)
                                            ..+.|.++.++|++.+||.|-+++.+.|-..... ....+..|...|.++.|++.|. 
T Consensus       591 ----------------------F~SQIfSLg~cP~~dWlavGMens~vevlh~skp-~kyqlhlheScVLSlKFa~cGk-  646 (705)
T KOG0639|consen  591 ----------------------FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP-EKYQLHLHESCVLSLKFAYCGK-  646 (705)
T ss_pred             ----------------------hhhhheecccCCCccceeeecccCcEEEEecCCc-cceeecccccEEEEEEecccCc-
Confidence                                  1345778889999999999999998888775433 2345667889999999999986 


Q ss_pred             CCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 008467          456 TNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL  521 (564)
Q Consensus       456 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~  521 (564)
                              ++++.+.|+-+..|..--|..++..+ ...+|.+...|-|.+||+|||.|+...+|.+
T Consensus       647 --------wfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  647 --------WFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             --------eeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence                    78999999999999998888888776 3568999999999999999999998888865

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.9e-20  Score=167.82  Aligned_cols=277  Identities=16%  Similarity=0.299  Sum_probs=196.3

Q ss_pred             eEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCe
Q 008467          219 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQ  298 (564)
Q Consensus       219 V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~  298 (564)
                      ..||.||+.|.+||.|..||.+.|||+.+-..                 ......|..+|++++||+||+.|+|++.|..
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i-----------------ar~lsaH~~pi~sl~WS~dgr~LltsS~D~s   88 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI-----------------ARMLSAHVRPITSLCWSRDGRKLLTSSRDWS   88 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccch-----------------hhhhhccccceeEEEecCCCCEeeeecCCce
Confidence            67999999999999999999999999876421                 1112345678999999999999999999999


Q ss_pred             EEEEECC-CceeEeecCCCCCEEEEEeCCCCCE-EEEeeCCCcEEEEECCCcceeEEEeecccCeE--E---EEc-CCCc
Q 008467          299 ARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDY-LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL--D---VDW-RNNV  370 (564)
Q Consensus       299 i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~--~---~~~-~~~~  370 (564)
                      |.+||+. |.+...+ ...+||+...|+|.... +++.-.+..-.+-++.... ...+......-.  .   ..+ +...
T Consensus        89 i~lwDl~~gs~l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~-h~~Lp~d~d~dln~sas~~~fdr~g~  166 (405)
T KOG1273|consen   89 IKLWDLLKGSPLKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK-HSVLPKDDDGDLNSSASHGVFDRRGK  166 (405)
T ss_pred             eEEEeccCCCceeEE-EccCccceeeeccccCCeEEEEEecCCcEEEEecCCc-eeeccCCCccccccccccccccCCCC
Confidence            9999964 5555554 36789999999996643 3333344444444433211 111111110000  0   012 2345


Q ss_pred             eEEEEeCCCeEEEEEcCCCceeeEecCCC-cceEEEEECCCCCEEEEEeCCCcEEEEeCCCC------eeeeeccccccc
Q 008467          371 SFATSSTDNMIYVCKIGENRPIKTFAGHQ-GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD------KYVHDLREHSKE  443 (564)
Q Consensus       371 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~------~~~~~~~~~~~~  443 (564)
                      .++++...|.+.+++..+-+.+..++-.. ..|..+.++..|.+|+.-+.|..||.|+++.-      ..+.-......-
T Consensus       167 yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDv  246 (405)
T KOG1273|consen  167 YIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDV  246 (405)
T ss_pred             EEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHH
Confidence            67889999999999999888877776555 67889999999999999999999999997521      111100001122


Q ss_pred             E-----EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCC-CCEEEEEEcCCCCEEEEEeCCCcEE
Q 008467          444 I-----YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR-EPVYSLAFSPTGEYLASGSLDKSMH  517 (564)
Q Consensus       444 i-----~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-~~i~~~~~spdg~~lasgs~dg~i~  517 (564)
                      |     .+++|+.+|        .++.++......++||.-..|.++..+.|.. .....+.|+|-...|++- ..|.|+
T Consensus       247 VNk~~Wk~ccfs~dg--------eYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~  317 (405)
T KOG1273|consen  247 VNKLQWKKCCFSGDG--------EYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVY  317 (405)
T ss_pred             HhhhhhhheeecCCc--------cEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceE
Confidence            2     344555544        3555555667789999999999999998776 567889999999888887 678999


Q ss_pred             EEeCCC
Q 008467          518 IWSLKE  523 (564)
Q Consensus       518 iw~~~~  523 (564)
                      ||....
T Consensus       318 iw~~~~  323 (405)
T KOG1273|consen  318 IWAVVQ  323 (405)
T ss_pred             EEEeec
Confidence            998753

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=2.7e-21  Score=180.90  Aligned_cols=233  Identities=24%  Similarity=0.389  Sum_probs=181.6

Q ss_pred             CCCEEEEEeCCCeEEEEECCCc---e-------------------eEeecCCCCCEEEEEeCCCC-CEEEEeeCCCcEEE
Q 008467          286 EGTLLATGSYDGQARIWSTNGD---L-------------------KCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIV  342 (564)
Q Consensus       286 ~g~~l~sg~~dg~i~vw~~~~~---~-------------------~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~i  342 (564)
                      .|+++|.|+.|..|.|||+.=.   .                   ...-.+|+..|.+|.|+..- +.|+|||.|.+|++
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL  270 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence            4789999999999999986310   0                   01123699999999999865 46889999999999


Q ss_pred             EECCCcceeEEEeecccCeEEEEcCCC--ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCE-EEEEeC
Q 008467          343 WDVKTEEWKQQFEFHSGPTLDVDWRNN--VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSL-LASCSD  419 (564)
Q Consensus       343 wd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~-las~s~  419 (564)
                      ||+.++++..++..|...+..+.|.+.  ..+++++.|+++.+.|.+........-...+.|-.++|+|.... ++++++
T Consensus       271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~td  350 (463)
T KOG0270|consen  271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTD  350 (463)
T ss_pred             EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecC
Confidence            999999999999999999999999764  56789999999999998753222111123568899999987654 667789


Q ss_pred             CCcEEEEeCCCC-eeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE--EEEEeCCCCCEE
Q 008467          420 DVTAKIWNMKQD-KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL--LYSLNGHREPVY  496 (564)
Q Consensus       420 dg~i~iwd~~~~-~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~h~~~i~  496 (564)
                      ||+++-+|++.. +++.++++|.++|.+|++++...        .+|++++.|+.|++|++.....  +..-.-.-+...
T Consensus       351 dG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p--------~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~  422 (463)
T KOG0270|consen  351 DGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTP--------GLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLH  422 (463)
T ss_pred             CceEEeeecCCCCCceeEEEeccCCcceEEecCCCC--------cceeeccccceEEEEeecCCCCccccccccccccee
Confidence            999999999876 88999999999999999987654        3799999999999999864332  221111112356


Q ss_pred             EEEEcCCC-CEEEEEeCCCcEEEEeCCCCeE
Q 008467          497 SLAFSPTG-EYLASGSLDKSMHIWSLKEGKI  526 (564)
Q Consensus       497 ~~~~spdg-~~lasgs~dg~i~iw~~~~~~~  526 (564)
                      |.++.|+- -+||.||..+.++|||+.+...
T Consensus       423 c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~  453 (463)
T KOG0270|consen  423 CFALDPDVAFTLAFGGEKAVLRVWDIFTNSP  453 (463)
T ss_pred             ecccCCCcceEEEecCccceEEEeecccChh
Confidence            77788875 4578888888999999987654

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=1.9e-20  Score=175.32  Aligned_cols=236  Identities=20%  Similarity=0.349  Sum_probs=181.2

Q ss_pred             EEEEeCC-------CCCEEEEeeCCCcEEEEECCCccee-E--------------------EEeecccCeEEEEcCC--C
Q 008467          320 FSLKWNK-------KGDYLLTGSCDKTAIVWDVKTEEWK-Q--------------------QFEFHSGPTLDVDWRN--N  369 (564)
Q Consensus       320 ~~l~~~~-------~~~~l~s~s~D~~v~iwd~~~~~~~-~--------------------~~~~~~~~~~~~~~~~--~  369 (564)
                      .|+.|..       .|++++.|..|..|.|||+.-...+ .                    .-..|+..++.+.|..  .
T Consensus       177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~  256 (463)
T KOG0270|consen  177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR  256 (463)
T ss_pred             hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence            5667743       3689999999999999997522110 0                    1124556667777754  3


Q ss_pred             ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEE
Q 008467          370 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR  448 (564)
Q Consensus       370 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~-~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~  448 (564)
                      ..+++++.|.+|.+||+.+++|..++..|.+.|.+++|+|. ...|++||.|+++++.|.+........-...+.|-.++
T Consensus       257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~  336 (463)
T KOG0270|consen  257 NVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVA  336 (463)
T ss_pred             eeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEE
Confidence            56899999999999999999999999999999999999986 46789999999999999984322211122356788899


Q ss_pred             EccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEEeCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCC--C
Q 008467          449 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTG-EYLASGSLDKSMHIWSLKE--G  524 (564)
Q Consensus       449 ~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~~~~spdg-~~lasgs~dg~i~iw~~~~--~  524 (564)
                      |.|...        ..++++..||+|+-+|+|+. ++++++..|..+|.+|++++.- .+|+|+|.|+.|++|++..  .
T Consensus       337 w~~~se--------~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~  408 (463)
T KOG0270|consen  337 WDPHSE--------NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP  408 (463)
T ss_pred             ecCCCc--------eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC
Confidence            988653        46778899999999999974 8999999999999999999865 5789999999999999864  3


Q ss_pred             eEEEEEecC-CCEEEEEEccCC-CEEEEEEcCCcEEEEEee
Q 008467          525 KIVKTYTGN-GGIFEVCWNKEG-DKIAACFANHTVCVLDFR  563 (564)
Q Consensus       525 ~~~~~~~~~-~~i~~~~w~~~g-~~la~~~~~~~v~v~~~~  563 (564)
                      +.++.-.-. +...+++..|+- -.||+|+.++.++|||+-
T Consensus       409 ~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~  449 (463)
T KOG0270|consen  409 KSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIF  449 (463)
T ss_pred             cccccccccccceeecccCCCcceEEEecCccceEEEeecc
Confidence            333332222 234566777765 378888888889999863

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=2.6e-21  Score=186.21  Aligned_cols=264  Identities=22%  Similarity=0.344  Sum_probs=191.7

Q ss_pred             eEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE
Q 008467          210 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL  289 (564)
Q Consensus       210 ~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~  289 (564)
                      .++..|.+.|.+++|+|....|++++.||++++|.++.....  .   ...+..+..+    ..|..+|.|++.++++..
T Consensus       288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s--~---~~~~epi~tf----raH~gPVl~v~v~~n~~~  358 (577)
T KOG0642|consen  288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKS--A---EKDVEPILTF----RAHEGPVLCVVVPSNGEH  358 (577)
T ss_pred             eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCc--c---ccceeeeEEE----ecccCceEEEEecCCceE
Confidence            378899999999999999999999999999999999542111  1   1111122222    245789999999999999


Q ss_pred             EEEEeCCCeEEEEECCC-----------ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeec-
Q 008467          290 LATGSYDGQARIWSTNG-----------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH-  357 (564)
Q Consensus       290 l~sg~~dg~i~vw~~~~-----------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-  357 (564)
                      +.+|+-||+|+.|++..           .+...+.+|++.|+.+++|+...+|+++|.||++++|+...... ..|... 
T Consensus       359 ~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~  437 (577)
T KOG0642|consen  359 CYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPK  437 (577)
T ss_pred             EEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCcc
Confidence            99999999999996421           23456789999999999999999999999999999999765544 222111 


Q ss_pred             -ccCeEEEEcCCCc--eEEEEeCCCeEEEEEcCCCceeeEecC-------CCcceEEEEECCCCCEEEEEeCCCcEEEEe
Q 008467          358 -SGPTLDVDWRNNV--SFATSSTDNMIYVCKIGENRPIKTFAG-------HQGEVNCVKWDPTGSLLASCSDDVTAKIWN  427 (564)
Q Consensus       358 -~~~~~~~~~~~~~--~~~~~~~d~~i~~~~~~~~~~~~~~~~-------h~~~i~~v~~~~~~~~las~s~dg~i~iwd  427 (564)
                       .+..+.+++....  ..+++..-+.--+.+......++.+..       ....++.+.++|.+.+.+++..|+.|+++|
T Consensus       438 e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~d  517 (577)
T KOG0642|consen  438 EHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFD  517 (577)
T ss_pred             ccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccc
Confidence             1112233322111  011111111111112222222222221       123577899999999999999999999999


Q ss_pred             CCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCC
Q 008467          428 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR  492 (564)
Q Consensus       428 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~  492 (564)
                      ..++.+++....|...++++++.|+|.         +|++++.||.|++|.+....++.....|+
T Consensus       518 n~~~~~l~s~~a~~~svtslai~~ng~---------~l~s~s~d~sv~l~kld~k~~~~es~~~r  573 (577)
T KOG0642|consen  518 NKTGKILHSMVAHKDSVTSLAIDPNGP---------YLMSGSHDGSVRLWKLDVKTCVLESTAHR  573 (577)
T ss_pred             ccccccchheeeccceecceeecCCCc---------eEEeecCCceeehhhccchheeecccccc
Confidence            999999999999999999999999886         89999999999999998888877766665

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.87  E-value=1.1e-20  Score=180.46  Aligned_cols=271  Identities=18%  Similarity=0.293  Sum_probs=197.4

Q ss_pred             CccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEe
Q 008467          215 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS  294 (564)
Q Consensus       215 h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~  294 (564)
                      |..-|.||.|+.....+.+++.+..++-|++.+.... .....+-......+..+.....         -.....|+.++
T Consensus        13 ~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~-~~~~p~df~pt~~h~~~rs~~~---------g~~~d~~~i~s   82 (737)
T KOG1524|consen   13 NSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVE-VAKLPDDFVPTDMHLGGRSSGG---------GKGSDTLLICS   82 (737)
T ss_pred             cceeEEeecccccceEEEeccCceEEEeecccchhhh-hhhCCcccCCccccccccccCC---------CCCcceEEEEc
Confidence            5566789999988888877766666666666543210 0000000000001111111100         01235688899


Q ss_pred             CCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEE
Q 008467          295 YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFAT  374 (564)
Q Consensus       295 ~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (564)
                      .||.+.+-+..++....+..|.++|.+-+|+|+|.-|++++.||.|++|. ++|-+..++.....++.++.|.++..-+.
T Consensus        83 ~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl  161 (737)
T KOG1524|consen   83 NDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIV  161 (737)
T ss_pred             CCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceE
Confidence            99999999999999889999999999999999999999999999999998 55555555555667899999987765544


Q ss_pred             EeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCC
Q 008467          375 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS  454 (564)
Q Consensus       375 ~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~  454 (564)
                      -...+.+++-.+..+..+..++.|.+-|.|+.|++...+++||++|-..+|||.. +..+..-..|.-+|++++|.|+. 
T Consensus       162 ~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd~-  239 (737)
T KOG1524|consen  162 FCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPEK-  239 (737)
T ss_pred             EecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeecccc-
Confidence            4556667776777666677889999999999999999999999999999999965 44555567789999999999973 


Q ss_pred             CCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 008467          455 GTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIW  519 (564)
Q Consensus       455 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw  519 (564)
                               .++.+|.+ ++|+=           ....+.|..++|||||..++.|...|.+.+=
T Consensus       240 ---------~~~v~S~n-t~R~~-----------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  240 ---------DYLLWSYN-TARFS-----------SPRVGSIFNLSWSADGTQATCGTSTGQLIVA  283 (737)
T ss_pred             ---------ceeeeeee-eeeec-----------CCCccceEEEEEcCCCceeeccccCceEEEe
Confidence                     45566643 34411           1234679999999999999999999877543

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.87  E-value=1.5e-20  Score=176.46  Aligned_cols=242  Identities=21%  Similarity=0.334  Sum_probs=185.9

Q ss_pred             CCCCeEEEEECCCC--CEEEEEeCCCeEEEEECCCc-----eeEeecCCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEEC
Q 008467          274 KSKDVTTLDWNGEG--TLLATGSYDGQARIWSTNGD-----LKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDV  345 (564)
Q Consensus       274 ~~~~V~~l~~s~~g--~~l~sg~~dg~i~vw~~~~~-----~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~  345 (564)
                      ....|++++|+|..  +++|+|..-|+|-+|+..++     -...+..|.++|.+|.|+|.+ .++++.|.||+|++-|+
T Consensus       185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~  264 (498)
T KOG4328|consen  185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDF  264 (498)
T ss_pred             cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeee
Confidence            45779999999954  58889999999999998532     345678899999999999966 57999999999999998


Q ss_pred             CCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEE
Q 008467          346 KTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI  425 (564)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~i  425 (564)
                      ++......+.                                       +......+..+.|+.+...++.+..=|...+
T Consensus       265 ~~~i~e~v~s---------------------------------------~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~  305 (498)
T KOG4328|consen  265 EGNISEEVLS---------------------------------------LDTDNIWFSSLDFSAESRSVLFGDNVGNFNV  305 (498)
T ss_pred             cchhhHHHhh---------------------------------------cCccceeeeeccccCCCccEEEeecccceEE
Confidence            7653221110                                       0011223456777777777788888789999


Q ss_pred             EeCCCCee-eeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe----EEEEEeCCCCCEEEEEE
Q 008467          426 WNMKQDKY-VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK----LLYSLNGHREPVYSLAF  500 (564)
Q Consensus       426 wd~~~~~~-~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~----~~~~~~~h~~~i~~~~~  500 (564)
                      ||.++.+. ...++-|...|.++++.|...        .+|||||.|++++|||++.-.    .+.....|+.+|.++.|
T Consensus       306 iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p--------~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyF  377 (498)
T KOG4328|consen  306 IDLRTDGSEYENLRLHKKKITSVALNPVCP--------WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYF  377 (498)
T ss_pred             EEeecCCccchhhhhhhcccceeecCCCCc--------hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEE
Confidence            99998765 566778889999999988654        489999999999999998522    22344569999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCC----CCeEEEEEecCC------CEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467          501 SPTGEYLASGSLDKSMHIWSLK----EGKIVKTYTGNG------GIFEVCWNKEGDKIAACFANHTVCVLDF  562 (564)
Q Consensus       501 spdg~~lasgs~dg~i~iw~~~----~~~~~~~~~~~~------~i~~~~w~~~g~~la~~~~~~~v~v~~~  562 (564)
                      ||+|-.|+|.+.|..|+|||..    .-....+..++.      ..+-..|+|+-+++++|-.-..|-|||-
T Consensus       378 SPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~  449 (498)
T KOG4328|consen  378 SPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDG  449 (498)
T ss_pred             cCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcC
Confidence            9998889999999999999984    223333333321      2456789999999999977777888863

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.87  E-value=2.2e-20  Score=182.02  Aligned_cols=267  Identities=23%  Similarity=0.330  Sum_probs=193.8

Q ss_pred             CCEEEEEeCCCeEEEEECCCc-------eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEE--Eeec
Q 008467          287 GTLLATGSYDGQARIWSTNGD-------LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ--FEFH  357 (564)
Q Consensus       287 g~~l~sg~~dg~i~vw~~~~~-------~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~--~~~~  357 (564)
                      ...|+.+..||.|.+++....       .......|.+.|+.+.|-|....|++++.|.++++||+++..+...  +..|
T Consensus        64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH  143 (720)
T KOG0321|consen   64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGH  143 (720)
T ss_pred             cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeeccc
Confidence            457899999999999996532       1234568999999999999777899999999999999999888776  7888


Q ss_pred             ccCeEEEEcC--CCceEEEEeCCCeEEEEEcCCCc--------------------ee-------eEecCCCcceEE---E
Q 008467          358 SGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENR--------------------PI-------KTFAGHQGEVNC---V  405 (564)
Q Consensus       358 ~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~--------------------~~-------~~~~~h~~~i~~---v  405 (564)
                      .+.+-.+++.  +...|++++.||.|.+||+....                    |.       .....|.+.|.+   +
T Consensus       144 ~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTv  223 (720)
T KOG0321|consen  144 TGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTV  223 (720)
T ss_pred             ccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEE
Confidence            8888877775  55789999999999999986432                    11       112234444544   5


Q ss_pred             EECCCCCEEEEEeC-CCcEEEEeCCCCeeeee--------cccc---cccEEEEEEccCCCCCCCCCCcEEEEEEeCCCe
Q 008467          406 KWDPTGSLLASCSD-DVTAKIWNMKQDKYVHD--------LREH---SKEIYTIRWSPTGSGTNNPNQQLILASASFDST  473 (564)
Q Consensus       406 ~~~~~~~~las~s~-dg~i~iwd~~~~~~~~~--------~~~~---~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~  473 (564)
                      -+..|...||+++. |+.|+|||++.......        +..|   .-.+.++.....|.        .++|+|. |++
T Consensus       224 v~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt--------~L~AsCt-D~s  294 (720)
T KOG0321|consen  224 VLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT--------YLFASCT-DNS  294 (720)
T ss_pred             EEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC--------eEEEEec-CCc
Confidence            56678899999998 99999999986543221        1122   11234444433332        4566655 999


Q ss_pred             EEEEeCCCC--eEEEEEeCCCCCE--EEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE-EEEEecCC-CEEEEEEccCC-C
Q 008467          474 VKLWDVELG--KLLYSLNGHREPV--YSLAFSPTGEYLASGSLDKSMHIWSLKEGKI-VKTYTGNG-GIFEVCWNKEG-D  546 (564)
Q Consensus       474 i~iwd~~~~--~~~~~~~~h~~~i--~~~~~spdg~~lasgs~dg~i~iw~~~~~~~-~~~~~~~~-~i~~~~w~~~g-~  546 (564)
                      |.+||+..-  ..+..+.++...-  ..-..|||+.+|++|+.|...+||.+.+-+. +..+.++. .|+.++|.|.- .
T Consensus       295 Iy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t  374 (720)
T KOG0321|consen  295 IYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATT  374 (720)
T ss_pred             EEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCC
Confidence            999999753  3345555543221  1234789999999999999999999987553 22233332 48899999965 5


Q ss_pred             EEEEEEcCCcEEEEEe
Q 008467          547 KIAACFANHTVCVLDF  562 (564)
Q Consensus       547 ~la~~~~~~~v~v~~~  562 (564)
                      .+|+|+.|-++.||++
T Consensus       375 ~v~TcSdD~~~kiW~l  390 (720)
T KOG0321|consen  375 PVATCSDDFRVKIWRL  390 (720)
T ss_pred             CceeeccCcceEEEec
Confidence            8888899999999986

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.87  E-value=7.2e-18  Score=172.60  Aligned_cols=327  Identities=29%  Similarity=0.577  Sum_probs=249.6

Q ss_pred             eeEccCCc-cceEEEEE-CCCCC-EEEEEEC-CCcEEEEeCCC-CCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEE
Q 008467          209 VTILEGHT-SEVCACAW-SPAGS-LLASGSG-DSTARIWTIAD-GTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW  283 (564)
Q Consensus       209 ~~~l~~h~-~~V~~~~~-sp~~~-~lasgs~-D~~i~iW~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~  283 (564)
                      ...+.++. ..+..+.+ ++++. +++..+. |+.+++|++.. ..             ...    ....+...|..++|
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-------------~~~----~~~~~~~~v~~~~~  163 (466)
T COG2319         101 IKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGK-------------LIR----TLEGHSESVTSLAF  163 (466)
T ss_pred             EEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCe-------------EEE----EEecCcccEEEEEE
Confidence            34444433 36666666 88887 5555454 99999999865 11             011    11234567889999


Q ss_pred             CCCCCEEEEEeC-CCeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCcceeE-EEeeccc
Q 008467          284 NGEGTLLATGSY-DGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQ-QFEFHSG  359 (564)
Q Consensus       284 s~~g~~l~sg~~-dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~-~~~~~~~  359 (564)
                      +|++..+++++. |+.+++|+... .....+..|...|.+++|+|++. .+++++.|+++++||...+.... .+..|..
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~  243 (466)
T COG2319         164 SPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD  243 (466)
T ss_pred             CCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCc
Confidence            999999999885 99999999874 66777888999999999999998 55666999999999988777777 5666666


Q ss_pred             CeEEEEcCCC-ceEEEEeCCCeEEEEEcCCCce-eeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeec
Q 008467          360 PTLDVDWRNN-VSFATSSTDNMIYVCKIGENRP-IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL  437 (564)
Q Consensus       360 ~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~-~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~  437 (564)
                      .. ...|..+ ..+++++.|+.+++|+...... +..+.+|...+.++.|+|++..+++++.|+.+++|+..+.......
T Consensus       244 ~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  322 (466)
T COG2319         244 SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSL  322 (466)
T ss_pred             ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEe
Confidence            54 2245444 4677899999999999986664 5555788899999999999888888999999999999888766665


Q ss_pred             c--cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEE-EeCCC
Q 008467          438 R--EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS-GSLDK  514 (564)
Q Consensus       438 ~--~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~las-gs~dg  514 (564)
                      .  .|...+..+.| +..       ...+..++..|+.+++|++............ ..+..+.+++ ...+.. ++.++
T Consensus       323 ~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~  392 (466)
T COG2319         323 TLKGHEGPVSSLSF-SPD-------GSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSP-DGRVVSSGSTDG  392 (466)
T ss_pred             eecccCCceEEEEE-CCC-------CCEEEEeecCCCcEEeeecCCCceeEEecCC-ceEEEEEECC-CCCEEEEecCCC
Confidence            5  77777899998 522       0124444468899999999877733333322 2388999999 544444 78899


Q ss_pred             cEEEEeCCCCeEEEEEecC-CCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          515 SMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       515 ~i~iw~~~~~~~~~~~~~~-~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      .+.+|+............. ..+....+++++..++.+..++.+.+|+..
T Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (466)
T COG2319         393 TVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK  442 (466)
T ss_pred             ceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEecc
Confidence            9999999998887777666 789999999999999999899999999864

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.86  E-value=7.3e-20  Score=178.87  Aligned_cols=275  Identities=19%  Similarity=0.336  Sum_probs=204.1

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEE
Q 008467          276 KDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF  354 (564)
Q Consensus       276 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  354 (564)
                      ..|..++|-|||..|+.+.. ..+.+||++ |.+..++.+|+..|++++|+.+|+.++||++|+.|.+|+.+-....+  
T Consensus        13 hci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk--   89 (1081)
T KOG1538|consen   13 HCINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK--   89 (1081)
T ss_pred             cchheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceee--
Confidence            36899999999999888765 478899975 77888999999999999999999999999999999999865433222  


Q ss_pred             eecccCeEEEEcCCC-ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCee
Q 008467          355 EFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY  433 (564)
Q Consensus       355 ~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~  433 (564)
                      -.|...+.++.|.+- ..+++|+-.. .-+|.......+ ..+ ....+.+++|..||++++.|-.||+|.|-+-.....
T Consensus        90 YSH~D~IQCMsFNP~~h~LasCsLsd-FglWS~~qK~V~-K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek  166 (1081)
T KOG1538|consen   90 YSHNDAIQCMSFNPITHQLASCSLSD-FGLWSPEQKSVS-KHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEK  166 (1081)
T ss_pred             eccCCeeeEeecCchHHHhhhcchhh-ccccChhhhhHH-hhh-hheeEEEeeecCCCcEEEEeccCceEEeecCCCCcc
Confidence            235666777777553 3345554321 123433322211 111 234688999999999999999999999986433322


Q ss_pred             ee--ecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe
Q 008467          434 VH--DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGS  511 (564)
Q Consensus       434 ~~--~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs  511 (564)
                      +.  .--+...+|++++|+|...    +....+++......++.++.+. |+.+..-+.-.-...|+++-|+|.|+..||
T Consensus       167 ~~I~Rpgg~Nspiwsi~~~p~sg----~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGG  241 (1081)
T KOG1538|consen  167 VKIERPGGSNSPIWSICWNPSSG----EGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGG  241 (1081)
T ss_pred             eEEeCCCCCCCCceEEEecCCCC----CCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEcc
Confidence            22  2224678999999999753    2222378889999999998876 666653333333457899999999999999


Q ss_pred             CCCcEEEEeCCCCeEEEEEe-cCCCEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467          512 LDKSMHIWSLKEGKIVKTYT-GNGGIFEVCWNKEGDKIAACFANHTVCVLDF  562 (564)
Q Consensus       512 ~dg~i~iw~~~~~~~~~~~~-~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~  562 (564)
                      .|+.+++|. +.|-.+.+.. ....|+.++-.|.|+.+++|+.||+++-||+
T Consensus       242 sdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl  292 (1081)
T KOG1538|consen  242 SDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL  292 (1081)
T ss_pred             CCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence            999999996 4566666553 3567999999999999999999999988875

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=2.9e-21  Score=200.47  Aligned_cols=276  Identities=23%  Similarity=0.432  Sum_probs=209.7

Q ss_pred             EEEECCCCC-EEEEEe----------CCCeEEEEECC---Cc--eeEe-ecCCCCCEEEEEeCCCCCE----EEEeeCCC
Q 008467          280 TLDWNGEGT-LLATGS----------YDGQARIWSTN---GD--LKCT-LSKHKGPIFSLKWNKKGDY----LLTGSCDK  338 (564)
Q Consensus       280 ~l~~s~~g~-~l~sg~----------~dg~i~vw~~~---~~--~~~~-~~~h~~~V~~l~~~~~~~~----l~s~s~D~  338 (564)
                      .++|+|.+. ++++|.          .+.++-||..+   ..  ++.. -......-..|+|.+.|..    |+.|..||
T Consensus        11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG   90 (1049)
T KOG0307|consen   11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDG   90 (1049)
T ss_pred             eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCC
Confidence            468999886 555442          24455566432   11  1111 0112334578999988876    88888999


Q ss_pred             cEEEEECCCc------ceeEEEeecccCeEEEEcCC--CceEEEEeCCCeEEEEEcCCCceeeEec--CCCcceEEEEEC
Q 008467          339 TAIVWDVKTE------EWKQQFEFHSGPTLDVDWRN--NVSFATSSTDNMIYVCKIGENRPIKTFA--GHQGEVNCVKWD  408 (564)
Q Consensus       339 ~v~iwd~~~~------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~--~h~~~i~~v~~~  408 (564)
                      .|.+||...-      ..+.++..|.++|..+++..  ...+++|+.||.|++||+.....-..+.  .-.+.|.+++|+
T Consensus        91 ~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWN  170 (1049)
T KOG0307|consen   91 NIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWN  170 (1049)
T ss_pred             ceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccc
Confidence            9999997642      34556788999999888864  4578999999999999997643222221  134679999998


Q ss_pred             CC-CCEEEEEeCCCcEEEEeCCCCeeeeecccccc--cEEEEEEccCCCCCCCCCCcEEEEEEeCC---CeEEEEeCCCC
Q 008467          409 PT-GSLLASCSDDVTAKIWNMKQDKYVHDLREHSK--EIYTIRWSPTGSGTNNPNQQLILASASFD---STVKLWDVELG  482 (564)
Q Consensus       409 ~~-~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~--~i~~i~~~p~~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~~  482 (564)
                      .. ...||+++.+|++.|||++..+++..+..+..  .+..+.|+|+...        .|++++.|   -.|.+||+|.-
T Consensus       171 rkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aT--------ql~~As~dd~~PviqlWDlR~a  242 (1049)
T KOG0307|consen  171 RKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHAT--------QLLVASGDDSAPVIQLWDLRFA  242 (1049)
T ss_pred             hhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCce--------eeeeecCCCCCceeEeeccccc
Confidence            75 45689999999999999999988888877665  3678999998752        34445444   36999999853


Q ss_pred             -eEEEEEeCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCeEEEEEecC-CCEEEEEEccCCC-EEEEEEcCCcEE
Q 008467          483 -KLLYSLNGHREPVYSLAFSPTG-EYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGD-KIAACFANHTVC  558 (564)
Q Consensus       483 -~~~~~~~~h~~~i~~~~~spdg-~~lasgs~dg~i~iw~~~~~~~~~~~~~~-~~i~~~~w~~~g~-~la~~~~~~~v~  558 (564)
                       ..+..+.+|...|.++.|++.+ .+|++++.|++|.+|+.++|+.+..+... ..++++.|.|..- .+|+++-+|.|-
T Consensus       243 ssP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~  322 (1049)
T KOG0307|consen  243 SSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKIS  322 (1049)
T ss_pred             CCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheecccee
Confidence             4567788999999999999977 89999999999999999999999988764 4589999999774 889999999999


Q ss_pred             EEEee
Q 008467          559 VLDFR  563 (564)
Q Consensus       559 v~~~~  563 (564)
                      ||.+.
T Consensus       323 I~sl~  327 (1049)
T KOG0307|consen  323 IYSLQ  327 (1049)
T ss_pred             eeeee
Confidence            99875

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.86  E-value=4.6e-20  Score=179.80  Aligned_cols=285  Identities=22%  Similarity=0.310  Sum_probs=200.1

Q ss_pred             EEEEECCC---CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC
Q 008467          220 CACAWSPA---GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD  296 (564)
Q Consensus       220 ~~~~~sp~---~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d  296 (564)
                      +++.|++.   ..+||.+-.||.|.++|.......       .....++    ....|...|-.+.|-|....|++++.|
T Consensus        53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr-------~ee~~lk----~~~aH~nAifDl~wapge~~lVsasGD  121 (720)
T KOG0321|consen   53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFR-------LEERQLK----KPLAHKNAIFDLKWAPGESLLVSASGD  121 (720)
T ss_pred             ccccccCCCCccceEEEecCCCceeeecchhhhcc-------hhhhhhc----ccccccceeEeeccCCCceeEEEccCC
Confidence            45677763   358999999999999997542211       0000011    123456789999999977789999999


Q ss_pred             CeEEEEECCCc-eeE--eecCCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCccee-------EEEeec--------
Q 008467          297 GQARIWSTNGD-LKC--TLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWK-------QQFEFH--------  357 (564)
Q Consensus       297 g~i~vw~~~~~-~~~--~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~-------~~~~~~--------  357 (564)
                      .++++||+.+. +.-  .+.+|.+.|.+++|.|.+. .|++|+.||.+.|||++-....       ..+..|        
T Consensus       122 sT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpsk  201 (720)
T KOG0321|consen  122 STIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSK  201 (720)
T ss_pred             ceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCc
Confidence            99999998753 332  3789999999999999764 6889999999999998643210       001111        


Q ss_pred             ------------c----cCeEEEEcCCCceEEEEeC-CCeEEEEEcCCCce--------eeEecCC---CcceEEEEECC
Q 008467          358 ------------S----GPTLDVDWRNNVSFATSST-DNMIYVCKIGENRP--------IKTFAGH---QGEVNCVKWDP  409 (564)
Q Consensus       358 ------------~----~~~~~~~~~~~~~~~~~~~-d~~i~~~~~~~~~~--------~~~~~~h---~~~i~~v~~~~  409 (564)
                                  .    +.|..+-+.++..+++++. |+.|+|||+.....        +..+.-|   .-.+.++..+.
T Consensus       202 p~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs  281 (720)
T KOG0321|consen  202 PLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS  281 (720)
T ss_pred             hhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC
Confidence                        1    1233456778888888877 99999999976532        2223333   23477888888


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCe--eeeecccccccEEEE--EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE-
Q 008467          410 TGSLLASCSDDVTAKIWNMKQDK--YVHDLREHSKEIYTI--RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-  484 (564)
Q Consensus       410 ~~~~las~s~dg~i~iwd~~~~~--~~~~~~~~~~~i~~i--~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-  484 (564)
                      .|.+|...+.|+.|.+|++.+..  ++..+.++...-..+  ..+|++.         +|++|+.|....+|.+.+.+. 
T Consensus       282 sGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~---------~l~SgSsd~~ayiw~vs~~e~~  352 (720)
T KOG0321|consen  282 SGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDC---------SLLSGSSDEQAYIWVVSSPEAP  352 (720)
T ss_pred             CCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCc---------eEeccCCCcceeeeeecCccCC
Confidence            88877666669999999987543  233343332211111  2345543         789999999999999987654 


Q ss_pred             EEEEeCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCC
Q 008467          485 LYSLNGHREPVYSLAFSPTG-EYLASGSLDKSMHIWSLKEG  524 (564)
Q Consensus       485 ~~~~~~h~~~i~~~~~spdg-~~lasgs~dg~i~iw~~~~~  524 (564)
                      ...+.+|...|++++|.|.. .-+|++++|.+++||++..+
T Consensus       353 ~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  353 PALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             hhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            55678999999999998864 45677799999999999765

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.86  E-value=1.1e-19  Score=175.89  Aligned_cols=278  Identities=22%  Similarity=0.333  Sum_probs=211.2

Q ss_pred             ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCE-EEEeeCCCcEEEEECCCcc
Q 008467          272 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDY-LLTGSCDKTAIVWDVKTEE  349 (564)
Q Consensus       272 ~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~D~~v~iwd~~~~~  349 (564)
                      .+|.+.|.++...|.|.+|++|+.||+||||.+.+ .++.++ ...+.|.+++|+|.+.. +++++.+.++.|-+..-|.
T Consensus       397 rGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~-~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~  475 (733)
T KOG0650|consen  397 RGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV-QFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGD  475 (733)
T ss_pred             eccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE-eecceeEEEEecCCCCceeEEEEecCceEEeCccccc
Confidence            45788899999999999999999999999999754 444433 34568999999998754 5555555556665543221


Q ss_pred             e-------------------------------------eEEEeecccCeEEEEcCCCc-eEEEEe---CCCeEEEEEcCC
Q 008467          350 W-------------------------------------KQQFEFHSGPTLDVDWRNNV-SFATSS---TDNMIYVCKIGE  388 (564)
Q Consensus       350 ~-------------------------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~---~d~~i~~~~~~~  388 (564)
                      .                                     +...-.|..++..+.|+... .|++..   ....|.+.++..
T Consensus       476 ~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK  555 (733)
T KOG0650|consen  476 RLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSK  555 (733)
T ss_pred             hhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccc
Confidence            0                                     01112344456778887554 344433   345688888877


Q ss_pred             CceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEE
Q 008467          389 NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASA  468 (564)
Q Consensus       389 ~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~  468 (564)
                      .+....|+-..+.|.++.|+|...+|+.++. ..|+|||+..+..+..+......|.+++.+|.|.         -|+.|
T Consensus       556 ~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GD---------nli~g  625 (733)
T KOG0650|consen  556 RKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGD---------NLILG  625 (733)
T ss_pred             ccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCC---------eEEEe
Confidence            6666667666788999999999998887775 4799999988888877777778889999999875         36779


Q ss_pred             eCCCeEEEEeCCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-------e--EEEEEec-----C
Q 008467          469 SFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG-------K--IVKTYTG-----N  533 (564)
Q Consensus       469 s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~-------~--~~~~~~~-----~  533 (564)
                      +.|+.+..+|+.-+ +...++..|...+.+|+|++.-.++|+|+.||++.||.-.-.       .  .++.+.+     .
T Consensus       626 s~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~  705 (733)
T KOG0650|consen  626 SYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTND  705 (733)
T ss_pred             cCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecc
Confidence            99999999999865 455678889999999999999999999999999999964311       1  2344444     3


Q ss_pred             CCEEEEEEccCCCEEEEEEcCCcEEEE
Q 008467          534 GGIFEVCWNKEGDKIAACFANHTVCVL  560 (564)
Q Consensus       534 ~~i~~~~w~~~g~~la~~~~~~~v~v~  560 (564)
                      .+|.++.|+|.--+|.++.+||++++|
T Consensus       706 ~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  706 LGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             cceEeecccCCCceEEecCCCceEEee
Confidence            568999999999999999999999998

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.86  E-value=2.4e-19  Score=181.54  Aligned_cols=241  Identities=21%  Similarity=0.351  Sum_probs=184.1

Q ss_pred             CCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCcee-------EeecCCCCCEEEEEeCCCCCE--EEEeeCCCcEEEEE
Q 008467          275 SKDVTTLDWNG-EGTLLATGSYDGQARIWSTNGDLK-------CTLSKHKGPIFSLKWNKKGDY--LLTGSCDKTAIVWD  344 (564)
Q Consensus       275 ~~~V~~l~~s~-~g~~l~sg~~dg~i~vw~~~~~~~-------~~~~~h~~~V~~l~~~~~~~~--l~s~s~D~~v~iwd  344 (564)
                      ...|++++|+| +..+++.|.++|.|.+||..+...       .....|..+|+.+.|..+-..  |+++|.||.|..|+
T Consensus       242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~  321 (555)
T KOG1587|consen  242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD  321 (555)
T ss_pred             CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence            46799999999 678899999999999999754322       234579999999999765544  99999999999998


Q ss_pred             CCCcceeE------EEe------ecccCeEEEEc--CCCceEEEEeCCCeEEEEEcCCCc--------eeeEecCCCcce
Q 008467          345 VKTEEWKQ------QFE------FHSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGENR--------PIKTFAGHQGEV  402 (564)
Q Consensus       345 ~~~~~~~~------~~~------~~~~~~~~~~~--~~~~~~~~~~~d~~i~~~~~~~~~--------~~~~~~~h~~~i  402 (564)
                      ++.-....      ...      .....+..+.+  .+...|+.|+.+|.|+.+......        ++..+..|.+.|
T Consensus       322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v  401 (555)
T KOG1587|consen  322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV  401 (555)
T ss_pred             ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence            76433211      001      01112344444  466789999999999986544322        234566788999


Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEeCC-CCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC
Q 008467          403 NCVKWDPTGSLLASCSDDVTAKIWNMK-QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL  481 (564)
Q Consensus       403 ~~v~~~~~~~~las~s~dg~i~iwd~~-~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~  481 (564)
                      .++.++|-+..++..+.|.+++||... ...++..+..+...+++++|||...        .+++++..||.|.|||+..
T Consensus       402 ~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrp--------avF~~~d~~G~l~iWDLl~  473 (555)
T KOG1587|consen  402 YAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRP--------AVFATVDGDGNLDIWDLLQ  473 (555)
T ss_pred             EeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCc--------eEEEEEcCCCceehhhhhc
Confidence            999999987665555559999999988 6677777777888899999999764        3899999999999999874


Q ss_pred             C--eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 008467          482 G--KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE  523 (564)
Q Consensus       482 ~--~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~  523 (564)
                      .  ..+.+..-+....+.+.|++.|+.|++|...|.+++|++..
T Consensus       474 ~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  474 DDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             cccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            3  34445544556677889999999999999999999999864

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.86  E-value=5.9e-20  Score=173.84  Aligned_cols=264  Identities=19%  Similarity=0.359  Sum_probs=197.7

Q ss_pred             ceEEEEECCCCC-EEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC
Q 008467          218 EVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD  296 (564)
Q Consensus       218 ~V~~~~~sp~~~-~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d  296 (564)
                      .++.+.|+.... .+|+-++|..+++|.-.. +. +       .+..+....+      ..-.|++......++++|+..
T Consensus        36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g-~~-~-------~Vp~~~k~~g------d~~~Cv~~~s~S~y~~sgG~~  100 (673)
T KOG4378|consen   36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDG-KT-P-------EVPRVRKLTG------DNAFCVACASQSLYEISGGQS  100 (673)
T ss_pred             cceeeeccccceEEEeecCCceeEEEecccC-CC-C-------ccceeecccc------chHHHHhhhhcceeeeccCcC
Confidence            488999988764 345556899999997322 10 0       0111121111      123344444445899999999


Q ss_pred             CeEEEEECCCcee-EeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEE
Q 008467          297 GQARIWSTNGDLK-CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATS  375 (564)
Q Consensus       297 g~i~vw~~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (564)
                      +.|+|||...++. ..+..|+..|+++.++-...||++++..|.|.|..+.++.....|...                  
T Consensus       101 ~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~------------------  162 (673)
T KOG4378|consen  101 GCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTID------------------  162 (673)
T ss_pred             ceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecC------------------
Confidence            9999999886544 467899999999999999999999999999999998876533332211                  


Q ss_pred             eCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCE-EEEEeCCCcEEEEeCCCCeeeeec-ccccccEEEEEEccCC
Q 008467          376 STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSL-LASCSDDVTAKIWNMKQDKYVHDL-REHSKEIYTIRWSPTG  453 (564)
Q Consensus       376 ~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~-las~s~dg~i~iwd~~~~~~~~~~-~~~~~~i~~i~~~p~~  453 (564)
                                            ....|.-+.|+|..++ |.+++++|.|.+||.....+++.+ ..|..+...|+|+|..
T Consensus       163 ----------------------sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsn  220 (673)
T KOG4378|consen  163 ----------------------SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSN  220 (673)
T ss_pred             ----------------------CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCc
Confidence                                  1123456788887664 678999999999999988776554 5799999999999865


Q ss_pred             CCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-EEEEEec
Q 008467          454 SGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK-IVKTYTG  532 (564)
Q Consensus       454 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~-~~~~~~~  532 (564)
                      .        .+|++.+.|..|.+||++..+...++. ...|..+++|+++|.+|++|+..|.|..||++.-+ .+++...
T Consensus       221 e--------~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sa  291 (673)
T KOG4378|consen  221 E--------ALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSA  291 (673)
T ss_pred             c--------ceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeee
Confidence            3        589999999999999999766665554 45689999999999999999999999999998654 4444433


Q ss_pred             -CCCEEEEEEccCC
Q 008467          533 -NGGIFEVCWNKEG  545 (564)
Q Consensus       533 -~~~i~~~~w~~~g  545 (564)
                       ...|..++|.+.-
T Consensus       292 h~~sVt~vafq~s~  305 (673)
T KOG4378|consen  292 HDASVTRVAFQPSP  305 (673)
T ss_pred             cccceeEEEeeecc
Confidence             4569999998875

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.85  E-value=8.2e-20  Score=169.24  Aligned_cols=291  Identities=22%  Similarity=0.347  Sum_probs=196.1

Q ss_pred             eEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCC---CCCCCCCceEEEEEeeccccccCCCCeEEEEECCC
Q 008467          210 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSN---GGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE  286 (564)
Q Consensus       210 ~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~  286 (564)
                      ..|..|...|++|.|+|+|.+||||+.+|.+.+|...+....   ......+....+.+..    ..|.++|..++|+|+
T Consensus        59 s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~l----r~h~~diydL~Ws~d  134 (434)
T KOG1009|consen   59 SSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVL----RGHRDDIYDLAWSPD  134 (434)
T ss_pred             ecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEe----cccccchhhhhccCC
Confidence            467899999999999999999999999999999987631110   0000111111222222    236788999999999


Q ss_pred             CCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEE
Q 008467          287 GTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD  365 (564)
Q Consensus       287 g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~  365 (564)
                      +.++++|+.|..+++||+. |.+.+.+..|...|..++|.|.++++++-+.|...+.+.+............   ++   
T Consensus       135 ~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~---~m---  208 (434)
T KOG1009|consen  135 SNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLD---IM---  208 (434)
T ss_pred             CceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeee---Ee---
Confidence            9999999999999999986 6778889999999999999999999999999997777776655443322210   00   


Q ss_pred             cCCCceEEEEeCCCeEEEEEcCCCceeeEecCC--CcceEEEEECCCCCEEEEEeC----CCcE-----EEEeCC-CCee
Q 008467          366 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGH--QGEVNCVKWDPTGSLLASCSD----DVTA-----KIWNMK-QDKY  433 (564)
Q Consensus       366 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h--~~~i~~v~~~~~~~~las~s~----dg~i-----~iwd~~-~~~~  433 (564)
                            .+-....+        .++..+.|...  ......++|+|+|.+|++.+.    .+.+     .+++-+ ..++
T Consensus       209 ------~~~~~~~~--------e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP  274 (434)
T KOG1009|consen  209 ------PAKAFNER--------EGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRP  274 (434)
T ss_pred             ------eecccCCC--------CcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCc
Confidence                  00000001        01111111100  123456889999999987642    2222     333322 1234


Q ss_pred             eeecccccccEEEEEEccCCC----CC------CCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEE-eCCCCCEEEEEEcC
Q 008467          434 VHDLREHSKEIYTIRWSPTGS----GT------NNPNQQLILASASFDSTVKLWDVELGKLLYSL-NGHREPVYSLAFSP  502 (564)
Q Consensus       434 ~~~~~~~~~~i~~i~~~p~~~----~~------~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~h~~~i~~~~~sp  502 (564)
                      +..+.....+...++++|--.    ..      ..| -.+++|.++. ..|.|||.++..+++.. +-|-.+|++++||+
T Consensus       275 ~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lp-yrlvfaiAt~-~svyvydtq~~~P~~~v~nihy~~iTDiaws~  352 (434)
T KOG1009|consen  275 AARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLP-YRLVFAIATK-NSVYVYDTQTLEPLAVVDNIHYSAITDIAWSD  352 (434)
T ss_pred             eeecCCCCcceEEEEeeeeEEEeccccccccccccc-cceEEEEeec-ceEEEeccccccceEEEeeeeeeeecceeecC
Confidence            445555666777777776321    00      011 1234555654 57999999988877665 45788999999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeE
Q 008467          503 TGEYLASGSLDKSMHIWSLKEGKI  526 (564)
Q Consensus       503 dg~~lasgs~dg~i~iw~~~~~~~  526 (564)
                      ||.+|+..|.||...+-..+.+++
T Consensus       353 dg~~l~vSS~DGyCS~vtfe~~el  376 (434)
T KOG1009|consen  353 DGSVLLVSSTDGFCSLVTFEPWEL  376 (434)
T ss_pred             CCcEEEEeccCCceEEEEEcchhc
Confidence            999999999999888877776554

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.85  E-value=2e-19  Score=159.42  Aligned_cols=257  Identities=26%  Similarity=0.419  Sum_probs=186.7

Q ss_pred             eEccCCccceEEEEECCC-CCEEEEEECC-------CcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEE
Q 008467          210 TILEGHTSEVCACAWSPA-GSLLASGSGD-------STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTL  281 (564)
Q Consensus       210 ~~l~~h~~~V~~~~~sp~-~~~lasgs~D-------~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l  281 (564)
                      .+|..|.++|..++-+|. .++|+|.-.|       ..+.||.++.....       .+...+..+......+-..|.|+
T Consensus        57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~-------S~~~tlE~v~~Ldteavg~i~cv  129 (370)
T KOG1007|consen   57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQ-------SNSSTLECVASLDTEAVGKINCV  129 (370)
T ss_pred             hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCc-------cccchhhHhhcCCHHHhCceeeE
Confidence            356778899999999995 5677776542       24789998753221       11111111111222334579999


Q ss_pred             EECCCCCEEEEEeCCCeEEEEECCCcee--Eee-----cCCCCCEEEEEeCC--CCCEEEEeeCCCcEEEEECCCcceeE
Q 008467          282 DWNGEGTLLATGSYDGQARIWSTNGDLK--CTL-----SKHKGPIFSLKWNK--KGDYLLTGSCDKTAIVWDVKTEEWKQ  352 (564)
Q Consensus       282 ~~s~~g~~l~sg~~dg~i~vw~~~~~~~--~~~-----~~h~~~V~~l~~~~--~~~~l~s~s~D~~v~iwd~~~~~~~~  352 (564)
                      .|.|++..+++-. |..|.+|+......  ..+     ..|....++-+|+|  +|+.+++. .|+++..||+++.....
T Consensus       130 ew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~  207 (370)
T KOG1007|consen  130 EWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNN  207 (370)
T ss_pred             EEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhc
Confidence            9999999988765 88999999754322  211     23566788899998  66777664 58999999999764322


Q ss_pred             EEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCC-EEEEEeCCCcEEEEeCCC-
Q 008467          353 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQ-  430 (564)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~-~las~s~dg~i~iwd~~~-  430 (564)
                      .                                        .-..|...|..+.|+|+.+ +|+||++||.|||||.+. 
T Consensus       208 s----------------------------------------I~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t  247 (370)
T KOG1007|consen  208 S----------------------------------------IEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT  247 (370)
T ss_pred             c----------------------------------------hhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC
Confidence            1                                        1235777788999999876 489999999999999875 


Q ss_pred             CeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC----------------------------
Q 008467          431 DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG----------------------------  482 (564)
Q Consensus       431 ~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~----------------------------  482 (564)
                      ..++.++.+|...+.+++|.|...        -++++|+.|..|.+|...+-                            
T Consensus       248 k~pv~el~~HsHWvW~VRfn~~hd--------qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~  319 (370)
T KOG1007|consen  248 KFPVQELPGHSHWVWAVRFNPEHD--------QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQ  319 (370)
T ss_pred             CccccccCCCceEEEEEEecCccc--------eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccc
Confidence            556889999999999999988643        37889999999999975321                            


Q ss_pred             -eEEEEEeCCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCC
Q 008467          483 -KLLYSLNGHREPVYSLAFSPTGEYL-ASGSLDKSMHIWSLKE  523 (564)
Q Consensus       483 -~~~~~~~~h~~~i~~~~~spdg~~l-asgs~dg~i~iw~~~~  523 (564)
                       ..+.++..|...|++++||.-..|+ |+-|.||++.|=.+..
T Consensus       320 dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  320 DGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             ccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence             1234567799999999999877775 7789999998877653

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.85  E-value=3.1e-20  Score=162.56  Aligned_cols=289  Identities=18%  Similarity=0.226  Sum_probs=195.6

Q ss_pred             ecCCceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEE
Q 008467          204 IPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW  283 (564)
Q Consensus       204 ~~~~~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~  283 (564)
                      +|+.+..+|++|.+.|+++.|-.+++ |.+|..-|.+++|++.+......             ..   ..+...|+.+.-
T Consensus         2 ~pPdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~-------------~r---~~g~~~it~lq~   64 (323)
T KOG0322|consen    2 VPPDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPL-------------IR---LFGRLFITNLQS   64 (323)
T ss_pred             CCCCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchh-------------hh---hhccceeeceee
Confidence            35667788999999999999988776 88999999999999986542110             00   123456777777


Q ss_pred             CCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCC-----CC---EEEEeeCCCc--EEEEECCCcceeEE
Q 008467          284 NGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKK-----GD---YLLTGSCDKT--AIVWDVKTEEWKQQ  353 (564)
Q Consensus       284 s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~-----~~---~l~s~s~D~~--v~iwd~~~~~~~~~  353 (564)
                      -|+ ..+.+-+.|+.+.+|+......  ...|.-.+.++.|.+.     ++   +++..-..+.  +.+-|......++.
T Consensus        65 ~p~-d~l~tqgRd~~L~lw~ia~s~~--i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i  141 (323)
T KOG0322|consen   65 IPN-DSLDTQGRDPLLILWTIAYSAF--ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQI  141 (323)
T ss_pred             cCC-cchhhcCCCceEEEEEccCcce--EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEc
Confidence            776 5677889999999999765322  2223334444444331     11   1111111111  11111110000000


Q ss_pred             E----eecccCeEEEEcCCC----ceEEEEeCCCeEEEEEcCCC----------ceeeEecCCCcceEEEEECCCCCEEE
Q 008467          354 F----EFHSGPTLDVDWRNN----VSFATSSTDNMIYVCKIGEN----------RPIKTFAGHQGEVNCVKWDPTGSLLA  415 (564)
Q Consensus       354 ~----~~~~~~~~~~~~~~~----~~~~~~~~d~~i~~~~~~~~----------~~~~~~~~h~~~i~~v~~~~~~~~la  415 (564)
                      .    ....+.+++.+|.-.    ..++++-.+|.+.+|++..+          +.+.....|..+|.++.|.+.-..=+
T Consensus       142 ~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGi  221 (323)
T KOG0322|consen  142 ADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGI  221 (323)
T ss_pred             cCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCc
Confidence            0    122345666665322    23567778999999999886          33344567899999999987665567


Q ss_pred             EEeCCCcEEEEeCCCCe--e-e-eecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCC
Q 008467          416 SCSDDVTAKIWNMKQDK--Y-V-HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH  491 (564)
Q Consensus       416 s~s~dg~i~iwd~~~~~--~-~-~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h  491 (564)
                      +|+.+..+..|+++...  + + .++.-....+..+...|++.         ++||++.|+.||||+.++.+.+..++-|
T Consensus       222 sgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~K---------IlATAGWD~RiRVyswrtl~pLAVLkyH  292 (323)
T KOG0322|consen  222 SGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGK---------ILATAGWDHRIRVYSWRTLNPLAVLKYH  292 (323)
T ss_pred             CCCccccceeeeeccccCcccccceEEecCCCccceEEccCCc---------EEeecccCCcEEEEEeccCCchhhhhhh
Confidence            88888889999876431  1 1 11112233466677778775         8999999999999999999999999999


Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 008467          492 REPVYSLAFSPTGEYLASGSLDKSMHIWSL  521 (564)
Q Consensus       492 ~~~i~~~~~spdg~~lasgs~dg~i~iw~~  521 (564)
                      +..|++++|+|+...+|+||.|++|.+|++
T Consensus       293 sagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  293 SAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             hcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            999999999999999999999999999985

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.84  E-value=4.2e-19  Score=159.79  Aligned_cols=268  Identities=21%  Similarity=0.359  Sum_probs=205.9

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEECCCcee-------------Eeec-CCCCCEEEEEeC-------CCCCEEEEeeC
Q 008467          278 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLK-------------CTLS-KHKGPIFSLKWN-------KKGDYLLTGSC  336 (564)
Q Consensus       278 V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~-------------~~~~-~h~~~V~~l~~~-------~~~~~l~s~s~  336 (564)
                      ...+.|||||..|++-+.|..+++|++.....             ..+. .....|+.-+|-       |+..++++.+.
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr  131 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR  131 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence            34568999999999999999999998642211             0111 123456777774       67889999999


Q ss_pred             CCcEEEEECCCcceeEEEeecc-----cCeEEEEcCCCceEEEEeCCCeEEEEEc-CCCce--eeEec-----CCCcceE
Q 008467          337 DKTAIVWDVKTEEWKQQFEFHS-----GPTLDVDWRNNVSFATSSTDNMIYVCKI-GENRP--IKTFA-----GHQGEVN  403 (564)
Q Consensus       337 D~~v~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~d~~i~~~~~-~~~~~--~~~~~-----~h~~~i~  403 (564)
                      |.-|.+||.-+|+....+....     ....++.|.++..-+.++....|+++++ +.++.  +..-.     |..+.|.
T Consensus       132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giis  211 (406)
T KOG2919|consen  132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIIS  211 (406)
T ss_pred             cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceee
Confidence            9999999999999888775432     2356788888888888889999999998 44432  22212     3367799


Q ss_pred             EEEECCCC-CEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEe-CCCeEEEEeCCC
Q 008467          404 CVKWDPTG-SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASAS-FDSTVKLWDVEL  481 (564)
Q Consensus       404 ~v~~~~~~-~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~  481 (564)
                      |++|+|.. +.+|.|+.-.++-|+.-..++++..+.+|.+.|+.++|.++|.         .|.+|+ .|..|..||++.
T Consensus       212 c~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn---------~lfsGaRk~dkIl~WDiR~  282 (406)
T KOG2919|consen  212 CFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGN---------KLFSGARKDDKILCWDIRY  282 (406)
T ss_pred             eeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcC---------eecccccCCCeEEEEeehh
Confidence            99999965 5899999999999999888999999999999999999999985         355655 578999999985


Q ss_pred             -CeEEEEEeCCCC-CEEEEEE--cCCCCEEEEEeCCCcEEEEeCCC-CeEEEEEec-CCCEEEEEEccCCCEEEEEEcC
Q 008467          482 -GKLLYSLNGHRE-PVYSLAF--SPTGEYLASGSLDKSMHIWSLKE-GKIVKTYTG-NGGIFEVCWNKEGDKIAACFAN  554 (564)
Q Consensus       482 -~~~~~~~~~h~~-~i~~~~~--spdg~~lasgs~dg~i~iw~~~~-~~~~~~~~~-~~~i~~~~w~~~g~~la~~~~~  554 (564)
                       +..++.+..|.. .-..|-|  .|+|++||+|+.||.|++||+++ |..+..+.. ...++.++++|.=.++|++++.
T Consensus       283 ~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  283 SRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             ccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence             456777777765 3334444  68999999999999999999988 554444432 3467899999998888888765

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.84  E-value=9e-19  Score=155.50  Aligned_cols=280  Identities=23%  Similarity=0.398  Sum_probs=194.8

Q ss_pred             cceEEEEECC--C-CCEEEEEEC----CCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC--
Q 008467          217 SEVCACAWSP--A-GSLLASGSG----DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG--  287 (564)
Q Consensus       217 ~~V~~~~~sp--~-~~~lasgs~----D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g--  287 (564)
                      -.++++.|+.  + +.+||.||-    .+.|.|-.+.....              .........+..+++.+-|.|+.  
T Consensus        45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~--------------e~~~~a~fd~~YP~tK~~wiPd~~g  110 (364)
T KOG0290|consen   45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSG--------------ELVEDANFDHPYPVTKLMWIPDSKG  110 (364)
T ss_pred             CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCC--------------ceeccCCCCCCCCccceEecCCccc
Confidence            3578889984  3 457888872    23444443321100              00011113456789999999976  


Q ss_pred             ---CEEEEEeCCCeEEEEECCC---c--eeEe-----ecCCCCCEEEEEeCCC-CCEEEEeeCCCcEEEEECCCcceeEE
Q 008467          288 ---TLLATGSYDGQARIWSTNG---D--LKCT-----LSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKTEEWKQQ  353 (564)
Q Consensus       288 ---~~l~sg~~dg~i~vw~~~~---~--~~~~-----~~~h~~~V~~l~~~~~-~~~l~s~s~D~~v~iwd~~~~~~~~~  353 (564)
                         .+|||.+  -.+|+|....   .  +...     -..+..|+++..|+.- -++|.++|-|.++.|||+.++..   
T Consensus       111 ~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~---  185 (364)
T KOG0290|consen  111 VYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS---  185 (364)
T ss_pred             cCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc---
Confidence               3566544  5899998652   1  1111     2346679999999974 46788999999999999987621   


Q ss_pred             EeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCe
Q 008467          354 FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDK  432 (564)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~-~~las~s~dg~i~iwd~~~~~  432 (564)
                                               +          ..-..+-.|..+|..++|...+ ..+||++.||.+|+||++...
T Consensus       186 -------------------------~----------~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le  230 (364)
T KOG0290|consen  186 -------------------------G----------TVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE  230 (364)
T ss_pred             -------------------------c----------ceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccc
Confidence                                     0          0112345688889999998755 578999999999999998654


Q ss_pred             eeeec---ccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC-CeEEEEeCCC-CeEEEEEeCCCCCEEEEEEcCCC-CE
Q 008467          433 YVHDL---REHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-STVKLWDVEL-GKLLYSLNGHREPVYSLAFSPTG-EY  506 (564)
Q Consensus       433 ~~~~~---~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d-g~i~iwd~~~-~~~~~~~~~h~~~i~~~~~spdg-~~  506 (564)
                      .-..+   .....+...++|++...        .++|+-.+| ..|.|.|++. ...+.++.+|...|+.|+|.|.. ..
T Consensus       231 HSTIIYE~p~~~~pLlRLswnkqDp--------nymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~h  302 (364)
T KOG0290|consen  231 HSTIIYEDPSPSTPLLRLSWNKQDP--------NYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSH  302 (364)
T ss_pred             cceEEecCCCCCCcceeeccCcCCc--------hHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCce
Confidence            32222   12244667777776532        367776665 4689999986 45688999999999999999974 78


Q ss_pred             EEEEeCCCcEEEEeCCCCe------EEEEEecCCCEEEEEEcc-CCCEEEEEEcCCcEEE
Q 008467          507 LASGSLDKSMHIWSLKEGK------IVKTYTGNGGIFEVCWNK-EGDKIAACFANHTVCV  559 (564)
Q Consensus       507 lasgs~dg~i~iw~~~~~~------~~~~~~~~~~i~~~~w~~-~g~~la~~~~~~~v~v  559 (564)
                      |++||.|..+.|||+..--      .+-.|...+.|+.+.|++ .++.+|.|+.+ .+-+
T Consensus       303 ictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~k-klei  361 (364)
T KOG0290|consen  303 ICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGK-KLEI  361 (364)
T ss_pred             eeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEecC-eeeE
Confidence            9999999999999997421      234455667899999995 67899999876 3444

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.83  E-value=2.1e-20  Score=187.04  Aligned_cols=282  Identities=26%  Similarity=0.452  Sum_probs=213.9

Q ss_pred             eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467          209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  288 (564)
Q Consensus       209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  288 (564)
                      ++-|.||...|+|+.|...|.++.||+.|..++||...++.+.                 ....+|+..|+.++.+.+..
T Consensus       183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~l-----------------As~rGhs~ditdlavs~~n~  245 (1113)
T KOG0644|consen  183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCL-----------------ASCRGHSGDITDLAVSSNNT  245 (1113)
T ss_pred             HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhh-----------------ccCCCCccccchhccchhhh
Confidence            3567899999999999999999999999999999997665432                 12235678899999999999


Q ss_pred             EEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcC
Q 008467          289 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR  367 (564)
Q Consensus       289 ~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  367 (564)
                      ++++++.|..|++|... +..+..+.+|+++|++++|+|-.    +.+.||++++||.+-...+  +  .          
T Consensus       246 ~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~--y--~----------  307 (1113)
T KOG0644|consen  246 MIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRI--Y--V----------  307 (1113)
T ss_pred             hhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccc--c--C----------
Confidence            99999999999999965 56677899999999999999954    7889999999998611000  0  0          


Q ss_pred             CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEE
Q 008467          368 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI  447 (564)
Q Consensus       368 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i  447 (564)
                                           ..|.. +. ....+.++.|...+.-++|++.|+..+.|.+....+      +...+.-+
T Consensus       308 ---------------------prp~~-~~-~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~lif~  358 (1113)
T KOG0644|consen  308 ---------------------PRPLK-FT-EKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAW------RSNLLIFV  358 (1113)
T ss_pred             ---------------------CCCCC-cc-cccceeeeeccccccccccccCCcccccchhhHhhh------hccceEEE
Confidence                                 01110 00 113455667777788899999999999887542211      11111111


Q ss_pred             EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCeE
Q 008467          448 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYL-ASGSLDKSMHIWSLKEGKI  526 (564)
Q Consensus       448 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~l-asgs~dg~i~iw~~~~~~~  526 (564)
                      ..+.+..        .+.+++-.+-.+.+|++.+|..++.+.+|...++.+.++|-...+ .+++.||...|||+-.|..
T Consensus       359 t~ssd~~--------~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~p  430 (1113)
T KOG0644|consen  359 TRSSDLS--------SIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIP  430 (1113)
T ss_pred             ecccccc--------ccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCc
Confidence            1111111        245566677889999999999999999999999999999977666 4899999999999999987


Q ss_pred             EEEEe-cCCCEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467          527 VKTYT-GNGGIFEVCWNKEGDKIAACFANHTVCVLDF  562 (564)
Q Consensus       527 ~~~~~-~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~  562 (564)
                      ++.|. +++.+.+-.||+||+.++..-.=|.+.|+..
T Consensus       431 ik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~  467 (1113)
T KOG0644|consen  431 IKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGT  467 (1113)
T ss_pred             ceeeecccceeeccccCCCCceEecCCCCCceEEecc
Confidence            77664 5667889999999999998877777777653

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.82  E-value=2.4e-19  Score=172.83  Aligned_cols=222  Identities=25%  Similarity=0.427  Sum_probs=166.2

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC---------ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEE
Q 008467          274 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG---------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD  344 (564)
Q Consensus       274 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~---------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd  344 (564)
                      +...|..++|.+....|++|+.||++++|+.+.         ....+|.+|.+||.|++..+++.++++|+.||+|+.|+
T Consensus       293 ~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~  372 (577)
T KOG0642|consen  293 HDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWN  372 (577)
T ss_pred             chhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeec
Confidence            456788999999999999999999999998721         34568999999999999999999999999999999998


Q ss_pred             CCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEE
Q 008467          345 VKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK  424 (564)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~  424 (564)
                      +....  ..+..+.                             .......+.||.+.|+.+++|+....|++||.||++|
T Consensus       373 ~p~n~--dp~ds~d-----------------------------p~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr  421 (577)
T KOG0642|consen  373 LPPNQ--DPDDSYD-----------------------------PSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVR  421 (577)
T ss_pred             cCCCC--CcccccC-----------------------------cchhccceeccccceeeeeecccccceeeecCCceEE
Confidence            75211  0010000                             0112346789999999999999999999999999999


Q ss_pred             EEeCCCCeeeeeccc---cccc-----------------------------EEEEEEccCCC------------CCCCCC
Q 008467          425 IWNMKQDKYVHDLRE---HSKE-----------------------------IYTIRWSPTGS------------GTNNPN  460 (564)
Q Consensus       425 iwd~~~~~~~~~~~~---~~~~-----------------------------i~~i~~~p~~~------------~~~~~~  460 (564)
                      +|+.....+ .+|..   |.-+                             +..+.+.+...            ...+|+
T Consensus       422 ~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~  500 (577)
T KOG0642|consen  422 LWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPT  500 (577)
T ss_pred             eeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCC
Confidence            998765443 11110   1000                             00011111000            001222


Q ss_pred             CcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 008467          461 QQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK  528 (564)
Q Consensus       461 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~  528 (564)
                      . .+.+++..|+.|+++|..+++.++.+..|...++++++.|+|.+|++|+.||.+.+|.+....++.
T Consensus       501 ~-~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~  567 (577)
T KOG0642|consen  501 A-DITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVL  567 (577)
T ss_pred             C-CeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheee
Confidence            2 257788999999999999999999999999999999999999999999999999999987554443

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=3.6e-17  Score=141.78  Aligned_cols=267  Identities=20%  Similarity=0.310  Sum_probs=182.1

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEECC----------Cce-eEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEEC
Q 008467          277 DVTTLDWNGEGTLLATGSYDGQARIWSTN----------GDL-KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV  345 (564)
Q Consensus       277 ~V~~l~~s~~g~~l~sg~~dg~i~vw~~~----------~~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~  345 (564)
                      .|.+-+|+|.+++|+.|..+|.|.+...+          |+. ....++|.+||+.++|.  ..+|++|+ ||.|+-|-.
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W   88 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW   88 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence            35666899999999999999999999753          222 23458999999999998  34566665 699998875


Q ss_pred             CCcc----eeE----EEeeccc--C---e--EEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC
Q 008467          346 KTEE----WKQ----QFEFHSG--P---T--LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT  410 (564)
Q Consensus       346 ~~~~----~~~----~~~~~~~--~---~--~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~  410 (564)
                      +...    ++.    +...+.+  +   +  +.++... ..++.+++|+.++-||+.+++..++|+||+..|.++.-...
T Consensus        89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e-nSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~  167 (325)
T KOG0649|consen   89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE-NSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA  167 (325)
T ss_pred             hhhhhhccchhhhhhcCccccCcccCCccceeEeccCC-CcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence            4321    111    1122221  1   1  2223333 34455559999999999999999999999999999998555


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeeeeeccccc----------ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC
Q 008467          411 GSLLASCSDDVTAKIWNMKQDKYVHDLREHS----------KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE  480 (564)
Q Consensus       411 ~~~las~s~dg~i~iwd~~~~~~~~~~~~~~----------~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~  480 (564)
                      ...+.||++||++||||.++++++..+....          ..|.+++-+.           ..|+. +.-..+.+|+++
T Consensus       168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e-----------dWlvC-GgGp~lslwhLr  235 (325)
T KOG0649|consen  168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE-----------DWLVC-GGGPKLSLWHLR  235 (325)
T ss_pred             CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC-----------ceEEe-cCCCceeEEecc
Confidence            5667899999999999999999887664321          2244443322           14544 445679999999


Q ss_pred             CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec-CCCEEEEEEccCCC-EEEEEEcCCcEE
Q 008467          481 LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGD-KIAACFANHTVC  558 (564)
Q Consensus       481 ~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~-~~~i~~~~w~~~g~-~la~~~~~~~v~  558 (564)
                      +.++...+. -..++..+.|-.|  .+++++..+.|.-|.+. |.+-...+. ....++.+|+..-- .|.++.....+.
T Consensus       236 sse~t~vfp-ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~  311 (325)
T KOG0649|consen  236 SSESTCVFP-IPARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLH  311 (325)
T ss_pred             CCCceEEEe-cccceeEeeeecc--eEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeee
Confidence            888766654 3456788888544  67778877788888774 333333332 34578888988764 444443344566


Q ss_pred             EE-Eee
Q 008467          559 VL-DFR  563 (564)
Q Consensus       559 v~-~~~  563 (564)
                      |+ |||
T Consensus       312 i~~~~~  317 (325)
T KOG0649|consen  312 ILKDFR  317 (325)
T ss_pred             eeeccc
Confidence            65 544

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=3e-18  Score=157.85  Aligned_cols=292  Identities=17%  Similarity=0.260  Sum_probs=207.4

Q ss_pred             eEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE
Q 008467          210 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL  289 (564)
Q Consensus       210 ~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~  289 (564)
                      .-+.+|.+.|+++.||.++++||+|+.|..+++|.+...-...  ...|+.+      .  ...|...|.|++|....++
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k--~~KPI~~------~--~~~H~SNIF~L~F~~~N~~  119 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRK--TPKPIGV------M--EHPHRSNIFSLEFDLENRF  119 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhc--CCCCcee------c--cCccccceEEEEEccCCee
Confidence            4567999999999999999999999999999999975421110  0112111      1  1234578999999999999


Q ss_pred             EEEEeCCCeEEEEECCCceeEeecCCC---CCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcc-eeEEEee--cccCeEE
Q 008467          290 LATGSYDGQARIWSTNGDLKCTLSKHK---GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE-WKQQFEF--HSGPTLD  363 (564)
Q Consensus       290 l~sg~~dg~i~vw~~~~~~~~~~~~h~---~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~--~~~~~~~  363 (564)
                      +.+|+.+|+|..-|+..+...-...|.   +.|+.+.-+|..+.|++.+.++.|.+||.+... ....+..  .......
T Consensus       120 ~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t  199 (609)
T KOG4227|consen  120 LYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYT  199 (609)
T ss_pred             EecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCcccee
Confidence            999999999999998876554444554   499999999999999999999999999987654 1111111  1122333


Q ss_pred             EEcC--CCceEEEEeCCCeEEEEEcCCCc-eeeEecCC---C---cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeee
Q 008467          364 VDWR--NNVSFATSSTDNMIYVCKIGENR-PIKTFAGH---Q---GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV  434 (564)
Q Consensus       364 ~~~~--~~~~~~~~~~d~~i~~~~~~~~~-~~~~~~~h---~---~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~  434 (564)
                      +.|.  ....+++.+..+.+-+|++.... ++..+.+.   .   ..-.++.|+|.|+.|.+--.-..-.+||+.+.++.
T Consensus       200 ~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~  279 (609)
T KOG4227|consen  200 AEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCF  279 (609)
T ss_pred             eeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccce
Confidence            4443  33456777777888899986542 33332222   1   12357889999999887766656667887765442


Q ss_pred             -eeccccc-------ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC----------C-------------e
Q 008467          435 -HDLREHS-------KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL----------G-------------K  483 (564)
Q Consensus       435 -~~~~~~~-------~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~----------~-------------~  483 (564)
                       ..+ .|.       ..+.+.+|.-+          ..+++||.+-.|.+|.+..          |             +
T Consensus       280 V~k~-D~N~~GY~N~~T~KS~~F~~D----------~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~  348 (609)
T KOG4227|consen  280 VLKS-DHNPNGYCNIKTIKSMTFIDD----------YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEK  348 (609)
T ss_pred             eEec-cCCCCcceeeeeeeeeeeecc----------eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecc
Confidence             222 222       23445555433          2489999999999998632          1             2


Q ss_pred             EEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 008467          484 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK  522 (564)
Q Consensus       484 ~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~  522 (564)
                      .+..+++|+.-++.+.|+|...+|++.+-.+.++||.-.
T Consensus       349 ~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  349 ELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH  387 (609)
T ss_pred             eeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence            345688999999999999999999999999999999753

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.81  E-value=2.2e-18  Score=159.11  Aligned_cols=209  Identities=20%  Similarity=0.455  Sum_probs=170.7

Q ss_pred             eecCCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCC
Q 008467          311 TLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGEN  389 (564)
Q Consensus       311 ~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  389 (564)
                      .+.+|+++|..++|+|-+ +.|+|||.|.+|.||.+..+.+...                                  ..
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~----------------------------------lt  121 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD----------------------------------LT  121 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC----------------------------------cc
Confidence            567999999999999965 5688999999999999865432211                                  13


Q ss_pred             ceeeEecCCCcceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEE
Q 008467          390 RPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASA  468 (564)
Q Consensus       390 ~~~~~~~~h~~~i~~v~~~~~~-~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~  468 (564)
                      .|+..+.||...|--++|+|.- +.|+|++.|.+|.||+..++..+.++. |...|+++.|+.+|.         +|++.
T Consensus       122 epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs---------~l~Tt  191 (472)
T KOG0303|consen  122 EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGS---------LLCTT  191 (472)
T ss_pred             cceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCc---------eeeee
Confidence            5778899999999999999975 678999999999999999999888877 999999999999987         79999


Q ss_pred             eCCCeEEEEeCCCCeEEEEEeCCCCC-EEEEEEcCCCCEEEEEe---CCCcEEEEeCCCCe---EEEEEecCCCEEEEEE
Q 008467          469 SFDSTVKLWDVELGKLLYSLNGHREP-VYSLAFSPTGEYLASGS---LDKSMHIWSLKEGK---IVKTYTGNGGIFEVCW  541 (564)
Q Consensus       469 s~dg~i~iwd~~~~~~~~~~~~h~~~-i~~~~~spdg~~lasgs---~dg~i~iw~~~~~~---~~~~~~~~~~i~~~~w  541 (564)
                      +.|..|||||.++++.+..-.+|.+. -..+.|-.+|..+-||-   .+..+-+||..+-+   ...+++...+|.--=|
T Consensus       192 ckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFy  271 (472)
T KOG0303|consen  192 CKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFY  271 (472)
T ss_pred             cccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeee
Confidence            99999999999999999988888642 35567888899444442   36789999976543   4566677778888889


Q ss_pred             ccCCCEEEEE-EcCCcEEEEEee
Q 008467          542 NKEGDKIAAC-FANHTVCVLDFR  563 (564)
Q Consensus       542 ~~~g~~la~~-~~~~~v~v~~~~  563 (564)
                      ++|.+.|-.| -+|+.|+.|.+.
T Consensus       272 D~dt~ivYl~GKGD~~IRYyEit  294 (472)
T KOG0303|consen  272 DPDTSIVYLCGKGDSSIRYFEIT  294 (472)
T ss_pred             cCCCCEEEEEecCCcceEEEEec
Confidence            9999977755 558888888763

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=5.3e-17  Score=164.75  Aligned_cols=278  Identities=22%  Similarity=0.381  Sum_probs=196.6

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC-----ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCc
Q 008467          274 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-----DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE  348 (564)
Q Consensus       274 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~-----~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~  348 (564)
                      |...+++.++||.++++|+|..||.|.+|.--+     .....+.-|..+|.++.|+++|.+|+||+..+.+.+|.+.++
T Consensus       204 Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~  283 (792)
T KOG1963|consen  204 HTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETG  283 (792)
T ss_pred             hcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCC
Confidence            445689999999999999999999999997443     233467789999999999999999999999999999999998


Q ss_pred             ceeEEEeecccCeEEEEcCCC-ceEEEEeCCCeEEEEEcCCCc---eeeEe--------cCCCcceEEEEECCCCCEEEE
Q 008467          349 EWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENR---PIKTF--------AGHQGEVNCVKWDPTGSLLAS  416 (564)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~---~~~~~--------~~h~~~i~~v~~~~~~~~las  416 (564)
                      + .+-+..-.+++..+.+.++ ..++....|+.|.+.....-.   .+..+        .+..+-.+.++++|..+.++-
T Consensus       284 ~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vl  362 (792)
T KOG1963|consen  284 K-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVL  362 (792)
T ss_pred             C-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceee
Confidence            8 4444555667888877654 566777889998887663321   11111        112445678899997778888


Q ss_pred             EeCCCcEEEEeCCCCeeeeeccc-----c------cccEEEEEEccCCCCCCCCCCcEEEEEEe--------CC--CeEE
Q 008467          417 CSDDVTAKIWNMKQDKYVHDLRE-----H------SKEIYTIRWSPTGSGTNNPNQQLILASAS--------FD--STVK  475 (564)
Q Consensus       417 ~s~dg~i~iwd~~~~~~~~~~~~-----~------~~~i~~i~~~p~~~~~~~~~~~~~l~s~s--------~d--g~i~  475 (564)
                      ++..|.|.+||+-+...+..+..     +      .-.++++..+-.|.         +++|.-        .|  -.+|
T Consensus       363 n~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs---------~maT~E~~~d~~~~~~~e~~LK  433 (792)
T KOG1963|consen  363 NGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGS---------WMATLEARIDKFNFFDGEVSLK  433 (792)
T ss_pred             cCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccce---------EEEEeeeeehhhhccCceEEEE
Confidence            99999999999987766554431     1      12344444444332         344322        23  3578


Q ss_pred             EEeCCCCeEEEE-----EeCCCCCEEEEEEcC-CCC-EEEEEeCCCcEEEEeCCC------Ce------EEEEEecCCCE
Q 008467          476 LWDVELGKLLYS-----LNGHREPVYSLAFSP-TGE-YLASGSLDKSMHIWSLKE------GK------IVKTYTGNGGI  536 (564)
Q Consensus       476 iwd~~~~~~~~~-----~~~h~~~i~~~~~sp-dg~-~lasgs~dg~i~iw~~~~------~~------~~~~~~~~~~i  536 (564)
                      +|-......-+.     ...|...+...+|.+ ... .++++|.||.++||-..+      +.      .+..| ....+
T Consensus       434 FW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy-~k~~i  512 (792)
T KOG1963|consen  434 FWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSY-HKTPI  512 (792)
T ss_pred             EEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeecc-ccCcc
Confidence            886553332222     246877666655543 333 899999999999999832      21      12223 35678


Q ss_pred             EEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          537 FEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       537 ~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      ..++|+.||+.||+++.| .|.|||.+
T Consensus       513 ~a~~fs~dGslla~s~~~-~Itiwd~~  538 (792)
T KOG1963|consen  513 TALCFSQDGSLLAVSFDD-TITIWDYD  538 (792)
T ss_pred             cchhhcCCCcEEEEecCC-EEEEecCC
Confidence            899999999988888655 89999975

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.80  E-value=2.4e-16  Score=154.52  Aligned_cols=218  Identities=19%  Similarity=0.313  Sum_probs=153.2

Q ss_pred             eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEee--------------------c
Q 008467          209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHV--------------------K  268 (564)
Q Consensus       209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~--------------------~  268 (564)
                      ..+|+||++.|+|++|+.+|+++|||+.|..+.+|.-.-...........+.-+.+...                    .
T Consensus        46 lqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~  125 (1081)
T KOG1538|consen   46 LQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKS  125 (1081)
T ss_pred             ccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhh
Confidence            46789999999999999999999999999999999753211111111111111111000                    0


Q ss_pred             cccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeec---CCCCCEEEEEeCCCC-----CEEEEeeCCCcE
Q 008467          269 GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLS---KHKGPIFSLKWNKKG-----DYLLTGSCDKTA  340 (564)
Q Consensus       269 ~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~---~h~~~V~~l~~~~~~-----~~l~s~s~D~~v  340 (564)
                      ......+..|.+.+|..||++|+.|-.||+|.+-+..|..+..+.   +.+.+|++++|+|..     ..++...+..++
T Consensus       126 V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTL  205 (1081)
T KOG1538|consen  126 VSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTL  205 (1081)
T ss_pred             HHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEecccee
Confidence            000123456889999999999999999999999998877655544   477899999999964     467788888888


Q ss_pred             EEEECCCcceeEEEeecccCeEEEEc-CCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC
Q 008467          341 IVWDVKTEEWKQQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD  419 (564)
Q Consensus       341 ~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~  419 (564)
                      .++.+... .+..-..-.-...++.+ .+...+..++.|+.+.++... +..+.++......|+.++..|+++.++.|+.
T Consensus       206 SFy~LsG~-~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCq  283 (1081)
T KOG1538|consen  206 SFYQLSGK-QIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-GVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQ  283 (1081)
T ss_pred             EEEEecce-eecccccCCCCchhheeccCCcEEEEccCCCceEEEeec-CeEEeeccccceeEEEEEEccCCceEEEEEc
Confidence            88877532 22211111112234444 455566788888988887653 4445566666778999999999999999999


Q ss_pred             CCcEEEEeC
Q 008467          420 DVTAKIWNM  428 (564)
Q Consensus       420 dg~i~iwd~  428 (564)
                      ||+|-.|++
T Consensus       284 DGTiACyNl  292 (1081)
T KOG1538|consen  284 DGTIACYNL  292 (1081)
T ss_pred             cCeeehhhh
Confidence            999999986

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=2.2e-17  Score=167.51  Aligned_cols=295  Identities=19%  Similarity=0.273  Sum_probs=204.5

Q ss_pred             cCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEE
Q 008467          213 EGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLAT  292 (564)
Q Consensus       213 ~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~s  292 (564)
                      ..|+-.++|.++||.++++|+|-.||.|.+|.=.... ..     ... ..+-      .-|...|++++|+++|.+|++
T Consensus       202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~-~~-----~~t-~t~l------HWH~~~V~~L~fS~~G~~LlS  268 (792)
T KOG1963|consen  202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSS-DD-----SET-CTLL------HWHHDEVNSLSFSSDGAYLLS  268 (792)
T ss_pred             hhhcccceeEEeccccceEEEeccCCcEEEEeccccc-cc-----ccc-ceEE------EecccccceeEEecCCceEee
Confidence            3577778999999999999999999999999632100 00     000 0111      124578999999999999999


Q ss_pred             EeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccC------------
Q 008467          293 GSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP------------  360 (564)
Q Consensus       293 g~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~------------  360 (564)
                      |+..|.+.+|......+..++.-.++|..+.++|++++.+....|+.|.+-...+.+....+.....+            
T Consensus       269 GG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~  348 (792)
T KOG1963|consen  269 GGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLT  348 (792)
T ss_pred             cccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccc
Confidence            99999999999876667888999999999999999999999999999999877665544433222111            


Q ss_pred             -eEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEec-----------CCCcceEEEEECCCCCEEEEEe--------CC
Q 008467          361 -TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA-----------GHQGEVNCVKWDPTGSLLASCS--------DD  420 (564)
Q Consensus       361 -~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-----------~h~~~i~~v~~~~~~~~las~s--------~d  420 (564)
                       ...++. .....+..+..+.|..|++-+...+..+.           .+.-.+++++.+..|.+++|.-        .|
T Consensus       349 t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~  427 (792)
T KOG1963|consen  349 TGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFD  427 (792)
T ss_pred             eeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccC
Confidence             122232 23455667778888888887766554432           1223467888888899988863        34


Q ss_pred             C--cEEEEeCCCCeee----e-ecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC------Ce----
Q 008467          421 V--TAKIWNMKQDKYV----H-DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL------GK----  483 (564)
Q Consensus       421 g--~i~iwd~~~~~~~----~-~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~------~~----  483 (564)
                      |  .+|+|-......-    . ....|...+...++.+..+       ....++++.||.++||-+..      ..    
T Consensus       428 ~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~r-------s~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~  500 (792)
T KOG1963|consen  428 GEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTR-------SVRCVTASVDGDFKIWVFTDDSNIYKKSSNWT  500 (792)
T ss_pred             ceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcc-------cceeEEeccCCeEEEEEEecccccCcCccceE
Confidence            3  4678875443221    1 1235666666666655432       12678999999999998732      22    


Q ss_pred             EEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CeEEEE
Q 008467          484 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE-GKIVKT  529 (564)
Q Consensus       484 ~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~-~~~~~~  529 (564)
                      |...-.-|..++++++||.||..|| +|.|++|.|||..+ ..+..+
T Consensus       501 c~~i~sy~k~~i~a~~fs~dGslla-~s~~~~Itiwd~~~~~~l~~~  546 (792)
T KOG1963|consen  501 CKAIGSYHKTPITALCFSQDGSLLA-VSFDDTITIWDYDTKNELLCT  546 (792)
T ss_pred             EeeeeccccCcccchhhcCCCcEEE-EecCCEEEEecCCChhhhhcc
Confidence            2111122678999999999997665 56788999999987 444333

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.80  E-value=7.8e-18  Score=151.71  Aligned_cols=232  Identities=24%  Similarity=0.414  Sum_probs=183.6

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEECCCc----eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEEC-CCcce
Q 008467          276 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGD----LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV-KTEEW  350 (564)
Q Consensus       276 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~----~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~-~~~~~  350 (564)
                      .+|+|.+|++|++.+|.+..+..|.||...+.    ...++..|...|+++.|+|..+.|++|+.|+.-.+|.. ..+++
T Consensus        11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~W   90 (361)
T KOG1523|consen   11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTW   90 (361)
T ss_pred             CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCee
Confidence            57999999999999999999999999987653    45678999999999999999999999999999999987 44443


Q ss_pred             eEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 008467          351 KQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ  430 (564)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~  430 (564)
                      .                                       |...+..++..++++.|+|.++.||+||.-..|.||-+..
T Consensus        91 k---------------------------------------ptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~  131 (361)
T KOG1523|consen   91 K---------------------------------------PTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQ  131 (361)
T ss_pred             c---------------------------------------cceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEec
Confidence            3                                       3334555788899999999999999999999999998765


Q ss_pred             Cee--e--eecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC------------------CeEEEEE
Q 008467          431 DKY--V--HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL------------------GKLLYSL  488 (564)
Q Consensus       431 ~~~--~--~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~------------------~~~~~~~  488 (564)
                      ..-  +  +.-+.+...|.++.|+|++.         +|+.||.|+..|||..--                  |+++.++
T Consensus       132 ENdWWVsKhikkPirStv~sldWhpnnV---------LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~  202 (361)
T KOG1523|consen  132 ENDWWVSKHIKKPIRSTVTSLDWHPNNV---------LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEA  202 (361)
T ss_pred             ccceehhhhhCCccccceeeeeccCCcc---------eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhh
Confidence            431  1  12234567899999999864         899999999999996421                  2233344


Q ss_pred             eCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-EEEEE-ecCCCEEEEEEccCCCEEEEEEcCC
Q 008467          489 NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK-IVKTY-TGNGGIFEVCWNKEGDKIAACFANH  555 (564)
Q Consensus       489 ~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~-~~~~~-~~~~~i~~~~w~~~g~~la~~~~~~  555 (564)
                      ....+.|..+.|+|+|..||-.+.|..+.+=|..... .+.+. ...-+..++.|-.+...+++|+.-+
T Consensus       203 ~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag~~c~  271 (361)
T KOG1523|consen  203 SSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVVAAGYDCG  271 (361)
T ss_pred             ccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCCceeecCCCCC
Confidence            3455789999999999999999999999999876553 23332 2234567889988888888887644

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.79  E-value=2.7e-17  Score=146.04  Aligned_cols=258  Identities=21%  Similarity=0.388  Sum_probs=187.6

Q ss_pred             CCeEEEEECC--C-c-eeEeecCCCCCEEEEEeCCCCCEEE-EeeCC-------CcEEEEECCCcc---------eeEEE
Q 008467          296 DGQARIWSTN--G-D-LKCTLSKHKGPIFSLKWNKKGDYLL-TGSCD-------KTAIVWDVKTEE---------WKQQF  354 (564)
Q Consensus       296 dg~i~vw~~~--~-~-~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D-------~~v~iwd~~~~~---------~~~~~  354 (564)
                      |+.|.+-..+  + . ....|..|.+.|+.++-+|-...++ |+..+       ..+.||.+....         ++..+
T Consensus        39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L  118 (370)
T KOG1007|consen   39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL  118 (370)
T ss_pred             cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence            4566555432  2 2 2345777899999999999776554 44442       246799875321         22222


Q ss_pred             e-ecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCce-eeEe-----cCCCcceEEEEECC--CCCEEEEEeCCCcEEE
Q 008467          355 E-FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRP-IKTF-----AGHQGEVNCVKWDP--TGSLLASCSDDVTAKI  425 (564)
Q Consensus       355 ~-~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~-~~~~-----~~h~~~i~~v~~~~--~~~~las~s~dg~i~i  425 (564)
                      . .+.+.+.++.|.++..-+++-.|+.|.+|++.+... +..+     .+|....++-+|+|  +|+.+++. .|++++.
T Consensus       119 dteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~  197 (370)
T KOG1007|consen  119 DTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQF  197 (370)
T ss_pred             CHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEE
Confidence            2 234567889998877666677799999999987655 2222     24667788999998  77887665 5789999


Q ss_pred             EeCCCCeeeeecc-cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEEeCCCCCEEEEEEcCC
Q 008467          426 WNMKQDKYVHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPT  503 (564)
Q Consensus       426 wd~~~~~~~~~~~-~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~~~~spd  503 (564)
                      ||+++.+....+. +|...+..+.|.|+        .+.+|++|+.||.|+|||.++- ..+.++.+|...|.++.|+|.
T Consensus       198 ~D~RT~~~~~sI~dAHgq~vrdlDfNpn--------kq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~  269 (370)
T KOG1007|consen  198 WDLRTMKKNNSIEDAHGQRVRDLDFNPN--------KQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPE  269 (370)
T ss_pred             EEccchhhhcchhhhhcceeeeccCCCC--------ceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCc
Confidence            9999988766664 68888999988765        4579999999999999999864 468899999999999999996


Q ss_pred             -CCEEEEEeCCCcEEEEeCCCCe-----------------------------EEEEEec-CCCEEEEEEccCCCEEE-EE
Q 008467          504 -GEYLASGSLDKSMHIWSLKEGK-----------------------------IVKTYTG-NGGIFEVCWNKEGDKIA-AC  551 (564)
Q Consensus       504 -g~~lasgs~dg~i~iw~~~~~~-----------------------------~~~~~~~-~~~i~~~~w~~~g~~la-~~  551 (564)
                       .++|.+||.|..|.+|....-.                             .+.+|+. ...|++++|+.-.-.+. +-
T Consensus       270 hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASL  349 (370)
T KOG1007|consen  270 HDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASL  349 (370)
T ss_pred             cceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEe
Confidence             4778899999999999754211                             1223433 35699999998777555 44


Q ss_pred             EcCCcEEEEEe
Q 008467          552 FANHTVCVLDF  562 (564)
Q Consensus       552 ~~~~~v~v~~~  562 (564)
                      +-||++.|=++
T Consensus       350 SYDGRviIs~V  360 (370)
T KOG1007|consen  350 SYDGRVIISSV  360 (370)
T ss_pred             ccCceEEeecC
Confidence            77999877554

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.79  E-value=2.6e-18  Score=155.12  Aligned_cols=267  Identities=20%  Similarity=0.371  Sum_probs=189.7

Q ss_pred             CccceEEEEECCCC----CEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC-CE
Q 008467          215 HTSEVCACAWSPAG----SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG-TL  289 (564)
Q Consensus       215 h~~~V~~~~~sp~~----~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-~~  289 (564)
                      |...-+.|+|+-+.    .+||.||.-|.|||-|+.+++..                 +...+|...|..+.+.|+. ++
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~-----------------~~~~ghG~sINeik~~p~~~ql  150 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCS-----------------KNYRGHGGSINEIKFHPDRPQL  150 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhc-----------------cceeccCccchhhhcCCCCCcE
Confidence            66677899998753    48999999999999998765432                 2334566789999999964 79


Q ss_pred             EEEEeCCCeEEEEECCCc-eeEee---cCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEE
Q 008467          290 LATGSYDGQARIWSTNGD-LKCTL---SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD  365 (564)
Q Consensus       290 l~sg~~dg~i~vw~~~~~-~~~~~---~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~  365 (564)
                      +++|+.|..||+|+.... ++..+   .+|.+.|.++.|+++|.+|++++.|.++++|++...++...++..      +.
T Consensus       151 vls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s------~~  224 (385)
T KOG1034|consen  151 VLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELS------IT  224 (385)
T ss_pred             EEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhh------cc
Confidence            999999999999998754 44444   579999999999999999999999999999999876654443321      11


Q ss_pred             cCCCceEEEEeCCCeEEEE-EcCCCceee-EecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeC-CCCe----------
Q 008467          366 WRNNVSFATSSTDNMIYVC-KIGENRPIK-TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNM-KQDK----------  432 (564)
Q Consensus       366 ~~~~~~~~~~~~d~~i~~~-~~~~~~~~~-~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~-~~~~----------  432 (564)
                      |.++.         +.+-+ .....-|.. +-.-|...|.|+.|-  |.+++|=|-++.|..|.. +-.+          
T Consensus       225 ~~~~~---------t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es  293 (385)
T KOG1034|consen  225 YSPNK---------TTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPES  293 (385)
T ss_pred             cCCCC---------ccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCcc
Confidence            21110         00000 000000111 223588899999996  689999999999999986 2111          


Q ss_pred             ---eeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEE--EEEeC--CCCCEEEEEEcCCCC
Q 008467          433 ---YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLL--YSLNG--HREPVYSLAFSPTGE  505 (564)
Q Consensus       433 ---~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~--h~~~i~~~~~spdg~  505 (564)
                         .+.++.-....|+-+.|+-+..       +.+||.|...|.|.+||++.....  .++..  ....|...+||.||.
T Consensus       294 ~~Ti~~~~~~~~c~iWfirf~~d~~-------~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs  366 (385)
T KOG1034|consen  294 ATTILGEFDYPMCDIWFIRFAFDPW-------QKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS  366 (385)
T ss_pred             ceeeeeEeccCccceEEEEEeecHH-------HHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCc
Confidence               1233444455667776654432       126888999999999999876542  22221  235689999999999


Q ss_pred             EEEEEeCCCcEEEEeCC
Q 008467          506 YLASGSLDKSMHIWSLK  522 (564)
Q Consensus       506 ~lasgs~dg~i~iw~~~  522 (564)
                      +|+....|++|.-||..
T Consensus       367 ~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  367 ILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             EEEEEeCCCcEEEEEee
Confidence            99999999999999864

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.79  E-value=1e-17  Score=160.37  Aligned_cols=261  Identities=19%  Similarity=0.333  Sum_probs=186.8

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeec---------CCCCCEEEEEeCCCCCEEEEeeCCCcEEEEE
Q 008467          274 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLS---------KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD  344 (564)
Q Consensus       274 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~---------~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd  344 (564)
                      ++.-|.|+.|+.....+.+++.+..+.-|+........+.         -|.++-. ..=-.....|+.++.||.+.|-+
T Consensus        13 ~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs-~~~g~~~d~~~i~s~DGkf~il~   91 (737)
T KOG1524|consen   13 NSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRS-SGGGKGSDTLLICSNDGRFVILN   91 (737)
T ss_pred             cceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccc-cCCCCCcceEEEEcCCceEEEec
Confidence            3455789999998877766655545555554332221111         1211100 00011235688899999999886


Q ss_pred             CCCcceeEEEeecccCeEEEEcCCC-ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcE
Q 008467          345 VKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA  423 (564)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i  423 (564)
                       +.+.+.+....|.+.+.+..|.++ ..+++++.||.|.+|.... ....++......|.|++|.|+.+-++-|-.+ .+
T Consensus        92 -k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG-MLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~-h~  168 (737)
T KOG1524|consen   92 -KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG-MLRSTVVQNEESIRCARWAPNSNSIVFCQGG-HI  168 (737)
T ss_pred             -ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc-hHHHHHhhcCceeEEEEECCCCCceEEecCC-eE
Confidence             566777778889999999999765 5788999999999998642 2223344456689999999998776655443 45


Q ss_pred             EEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCC
Q 008467          424 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPT  503 (564)
Q Consensus       424 ~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spd  503 (564)
                      .|=-+.....+-..++|.+-|.++.|+|...         ++++|+.|-.-+|||.. |..++.-..|.-||++++|+||
T Consensus       169 ~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~---------lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd  238 (737)
T KOG1524|consen  169 SIKPLAANSKIIRWRAHDGLVLSLSWSTQSN---------IIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE  238 (737)
T ss_pred             EEeecccccceeEEeccCcEEEEeecCcccc---------ceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc
Confidence            5545554445566789999999999998764         89999999999999976 8888888889999999999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEE
Q 008467          504 GEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVL  560 (564)
Q Consensus       504 g~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~  560 (564)
                       +.++.+|.. ++++          .-...+.|+.++||+||..++.|.+.|.|.+-
T Consensus       239 -~~~~v~S~n-t~R~----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  239 -KDYLLWSYN-TARF----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIVA  283 (737)
T ss_pred             -cceeeeeee-eeee----------cCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence             666666643 2331          11234679999999999999999999987653

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.78  E-value=2.6e-17  Score=169.07  Aligned_cols=289  Identities=21%  Similarity=0.335  Sum_probs=206.5

Q ss_pred             ccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC--CCCE
Q 008467          212 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--EGTL  289 (564)
Q Consensus       212 l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~--~g~~  289 (564)
                      +.+.......+.|+|-...++++...-.|++||.+.++......++              ......|+.+.+-.  |..+
T Consensus      1060 ~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~--------------~~~~t~Vs~l~liNe~D~aL 1125 (1387)
T KOG1517|consen 1060 MTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNG--------------AFPDTRVSDLELINEQDDAL 1125 (1387)
T ss_pred             HhcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCC--------------CCCCCccceeeeecccchhh
Confidence            3444445677889999888998887789999999877643322221              12245688887754  5678


Q ss_pred             EEEEeCCCeEEEEECC----C--ceeEee---cC----CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEee
Q 008467          290 LATGSYDGQARIWSTN----G--DLKCTL---SK----HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF  356 (564)
Q Consensus       290 l~sg~~dg~i~vw~~~----~--~~~~~~---~~----h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~  356 (564)
                      +++|+.||.||||+--    +  +++...   .+    -.+.-.-+.|.....+|++++.-+.|+|||+....+...+..
T Consensus      1126 lLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~ 1205 (1387)
T KOG1517|consen 1126 LLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPY 1205 (1387)
T ss_pred             eeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeeccc
Confidence            9999999999999732    1  222211   11    122224467988887888877788999999988877766554


Q ss_pred             cccC-e--EEEEcCCCceEEEEeCCCeEEEEEcCCC---ceeeEecCCCcc--eEEEEECCCCCE-EEEEeCCCcEEEEe
Q 008467          357 HSGP-T--LDVDWRNNVSFATSSTDNMIYVCKIGEN---RPIKTFAGHQGE--VNCVKWDPTGSL-LASCSDDVTAKIWN  427 (564)
Q Consensus       357 ~~~~-~--~~~~~~~~~~~~~~~~d~~i~~~~~~~~---~~~~~~~~h~~~--i~~v~~~~~~~~-las~s~dg~i~iwd  427 (564)
                      .... +  +..+......+++|-.||.+++||.+..   .++..++.|+..  |..+.+.+.|-- |++||.||.|++||
T Consensus      1206 ~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~D 1285 (1387)
T KOG1517|consen 1206 GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLD 1285 (1387)
T ss_pred             CCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEe
Confidence            4332 2  2233345678899999999999998754   357788899887  999999886644 89999999999999


Q ss_pred             CCCCeee--eecccc---cccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeC-------CCCCE
Q 008467          428 MKQDKYV--HDLREH---SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG-------HREPV  495 (564)
Q Consensus       428 ~~~~~~~--~~~~~~---~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-------h~~~i  495 (564)
                      ++.....  .++..|   .+..+++..++...         ++|+|+. +.|+||++. |+.+..++.       ....+
T Consensus      1286 lR~~~~e~~~~iv~~~~yGs~lTal~VH~hap---------iiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~ 1354 (1387)
T KOG1517|consen 1286 LRMSSKETFLTIVAHWEYGSALTALTVHEHAP---------IIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSV 1354 (1387)
T ss_pred             cccCcccccceeeeccccCccceeeeeccCCC---------eeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCc
Confidence            9874211  122222   22467777766543         7899988 999999987 555444332       23467


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 008467          496 YSLAFSPTGEYLASGSLDKSMHIWSLKEGK  525 (564)
Q Consensus       496 ~~~~~spdg~~lasgs~dg~i~iw~~~~~~  525 (564)
                      .|++|+|-.-.||+|+.|.+|.||...++.
T Consensus      1355 scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1355 SCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             ceeeecchhHhhhhccCCceEEEeecCCcC
Confidence            999999999999999999999999887543

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.78  E-value=6.7e-16  Score=152.97  Aligned_cols=271  Identities=14%  Similarity=0.227  Sum_probs=171.0

Q ss_pred             EEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEe-CCCeEEEEECCC--c
Q 008467          231 LASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS-YDGQARIWSTNG--D  307 (564)
Q Consensus       231 lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~-~dg~i~vw~~~~--~  307 (564)
                      +++...|+.|++|++.+...        +.  .++...     .......++++|++++|++++ .++.|.+|+.+.  .
T Consensus         5 y~~~~~~~~I~~~~~~~~g~--------l~--~~~~~~-----~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~   69 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGA--------LT--LLQVVD-----VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA   69 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCc--------ee--eeeEEe-----cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc
Confidence            34446789999999853211        11  111111     123466789999999887765 478899998752  2


Q ss_pred             eeEe-ecCCCCCEEEEEeCCCCCEEEEeeC-CCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEE
Q 008467          308 LKCT-LSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCK  385 (564)
Q Consensus       308 ~~~~-~~~h~~~V~~l~~~~~~~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~  385 (564)
                      +... .....+....+.|+|++++|++++. ++.|.+|++.+.....                                 
T Consensus        70 l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~---------------------------------  116 (330)
T PRK11028         70 LTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPV---------------------------------  116 (330)
T ss_pred             eEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCC---------------------------------
Confidence            2211 1113335578999999999887764 7889999885321110                                 


Q ss_pred             cCCCceeeEecCCCcceEEEEECCCCCEEE-EEeCCCcEEEEeCCCCeeeee-----cc-cccccEEEEEEccCCCCCCC
Q 008467          386 IGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVTAKIWNMKQDKYVHD-----LR-EHSKEIYTIRWSPTGSGTNN  458 (564)
Q Consensus       386 ~~~~~~~~~~~~h~~~i~~v~~~~~~~~la-s~s~dg~i~iwd~~~~~~~~~-----~~-~~~~~i~~i~~~p~~~~~~~  458 (564)
                          ..+..+.+ .....+++++|++++++ +...++.|.+||+.+...+..     .. ........+.|+|++.    
T Consensus       117 ----~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~----  187 (330)
T PRK11028        117 ----APIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQ----  187 (330)
T ss_pred             ----CceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCC----
Confidence                00111111 12345678999998875 455679999999976432211     11 1123346788888875    


Q ss_pred             CCCcEEEEEEe-CCCeEEEEeCCC--C--eEEEEEeCC------CCCEEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCe-
Q 008467          459 PNQQLILASAS-FDSTVKLWDVEL--G--KLLYSLNGH------REPVYSLAFSPTGEYLASGSL-DKSMHIWSLKEGK-  525 (564)
Q Consensus       459 ~~~~~~l~s~s-~dg~i~iwd~~~--~--~~~~~~~~h------~~~i~~~~~spdg~~lasgs~-dg~i~iw~~~~~~-  525 (564)
                           ++++++ .+++|.+|++..  +  +.+..+..+      ......+.|+|+|++|+++.. ++.|.+|++.... 
T Consensus       188 -----~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~  262 (330)
T PRK11028        188 -----YAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGS  262 (330)
T ss_pred             -----EEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCC
Confidence                 444444 489999999973  3  233333221      112346899999999988854 7899999985432 


Q ss_pred             ---EEEEEecCCCEEEEEEccCCCEEEEEEc-CCcEEEEEee
Q 008467          526 ---IVKTYTGNGGIFEVCWNKEGDKIAACFA-NHTVCVLDFR  563 (564)
Q Consensus       526 ---~~~~~~~~~~i~~~~w~~~g~~la~~~~-~~~v~v~~~~  563 (564)
                         ++...........++|+|+|++|+++.. +++|.||++.
T Consensus       263 ~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        263 VLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             eEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence               3333333334568999999999998765 8899999763

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.77  E-value=2e-16  Score=160.49  Aligned_cols=257  Identities=21%  Similarity=0.308  Sum_probs=186.0

Q ss_pred             CeEEEEECCCceeE-eecCCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCccee--E----EEeecccCeEEEEcCC
Q 008467          297 GQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWK--Q----QFEFHSGPTLDVDWRN  368 (564)
Q Consensus       297 g~i~vw~~~~~~~~-~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~--~----~~~~~~~~~~~~~~~~  368 (564)
                      +.+.||+....... ..-.-..+|++++|+|.. +.++.|..+|+|.+||++.+...  .    ....|..++..+.|..
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~  301 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ  301 (555)
T ss_pred             ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence            47899987644221 222345789999999965 56778888999999999876652  2    2245777899999953


Q ss_pred             C---ceEEEEeCCCeEEEEEcCCCc-eeeEe-----c------CCCcceEEEEECCCC-CEEEEEeCCCcEEEEe---CC
Q 008467          369 N---VSFATSSTDNMIYVCKIGENR-PIKTF-----A------GHQGEVNCVKWDPTG-SLLASCSDDVTAKIWN---MK  429 (564)
Q Consensus       369 ~---~~~~~~~~d~~i~~~~~~~~~-~~~~~-----~------~h~~~i~~v~~~~~~-~~las~s~dg~i~iwd---~~  429 (564)
                      +   ..|++++.||.|..|+++.-. |+...     .      .-...+++++|.+.. ..++.|+++|.|.-=+   .+
T Consensus       302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~  381 (555)
T KOG1587|consen  302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT  381 (555)
T ss_pred             cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence            3   458999999999999876422 11111     1      112357889998744 5688999999887622   22


Q ss_pred             CCe-----eeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC-CCeEEEEEeCCCCCEEEEEEcCC
Q 008467          430 QDK-----YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE-LGKLLYSLNGHREPVYSLAFSPT  503 (564)
Q Consensus       430 ~~~-----~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~h~~~i~~~~~spd  503 (564)
                      ...     .+..+..|.++|+++.++|-+.        .++++++ |.+|+||.-. ...++..+..+...|++++|||.
T Consensus       382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~--------k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSpt  452 (555)
T KOG1587|consen  382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYP--------KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPT  452 (555)
T ss_pred             ccccccccccccccccCcceEeeecCCCcc--------ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCc
Confidence            221     1335567889999999999764        2455555 9999999987 66777778778888999999998


Q ss_pred             C-CEEEEEeCCCcEEEEeCCCCe--EEEEEe-cCCCEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467          504 G-EYLASGSLDKSMHIWSLKEGK--IVKTYT-GNGGIFEVCWNKEGDKIAACFANHTVCVLDF  562 (564)
Q Consensus       504 g-~~lasgs~dg~i~iw~~~~~~--~~~~~~-~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~  562 (564)
                      . ..+|++..||.|.|||+....  .+.+.. +....+.+.|++.|+.||+|..+|++.+|++
T Consensus       453 rpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l  515 (555)
T KOG1587|consen  453 RPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKL  515 (555)
T ss_pred             CceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence            7 566888889999999996533  222221 1334567899999999999999999999987

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.77  E-value=3.8e-18  Score=157.57  Aligned_cols=160  Identities=26%  Similarity=0.524  Sum_probs=136.9

Q ss_pred             eEecCCCcceEEEEECCC-CCEEEEEeCCCcEEEEeCCCC-------eeeeecccccccEEEEEEccCCCCCCCCCCcEE
Q 008467          393 KTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQD-------KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLI  464 (564)
Q Consensus       393 ~~~~~h~~~i~~v~~~~~-~~~las~s~dg~i~iwd~~~~-------~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~  464 (564)
                      -.+.||++.|..++|+|- ...|||||+|.+|.||++-..       .++..+.+|...|..++|+|...        .+
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~--------NV  146 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP--------NV  146 (472)
T ss_pred             CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccch--------hh
Confidence            356799999999999995 467899999999999997543       45677889999999999999754        37


Q ss_pred             EEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCC--EEEEEEc
Q 008467          465 LASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG--IFEVCWN  542 (564)
Q Consensus       465 l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~--i~~~~w~  542 (564)
                      |+|++.|.+|.+||+.+|+.+.++. |..-|++++|+.||.+|++.+.|+.|+|||.++|+++..-.++.+  ...+-|-
T Consensus       147 Llsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl  225 (472)
T KOG0303|consen  147 LLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFL  225 (472)
T ss_pred             HhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEe
Confidence            8999999999999999999999988 999999999999999999999999999999999999887655443  3456788


Q ss_pred             cCCCEEEEEEc---CCcEEEEE
Q 008467          543 KEGDKIAACFA---NHTVCVLD  561 (564)
Q Consensus       543 ~~g~~la~~~~---~~~v~v~~  561 (564)
                      .+|+.+.+|++   +..+.+||
T Consensus       226 ~~g~i~tTGfsr~seRq~aLwd  247 (472)
T KOG0303|consen  226 ASGKIFTTGFSRMSERQIALWD  247 (472)
T ss_pred             ccCceeeeccccccccceeccC
Confidence            89997777765   45677776

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.77  E-value=1.5e-17  Score=145.84  Aligned_cols=276  Identities=16%  Similarity=0.236  Sum_probs=188.6

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCc-eeEeec-CCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcce
Q 008467          273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD-LKCTLS-KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW  350 (564)
Q Consensus       273 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~-~~~~~~-~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~  350 (564)
                      ++...|+++.|..++. |.+|..-|.|++|...+. ....+. .|...|+.+.--|+ ..+.+-+.|..+.+|++.....
T Consensus        12 p~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~   89 (323)
T KOG0322|consen   12 PHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAF   89 (323)
T ss_pred             cccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcce
Confidence            4567899999998876 789999999999998754 344555 57789999998887 6789999999999999876554


Q ss_pred             eEEEeecccCeEEEEcCC-------C--ceEEEEeCCC--eEEEEEcCCCceeeEe----cCCCcceEEEEECCC-CC--
Q 008467          351 KQQFEFHSGPTLDVDWRN-------N--VSFATSSTDN--MIYVCKIGENRPIKTF----AGHQGEVNCVKWDPT-GS--  412 (564)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~-------~--~~~~~~~~d~--~i~~~~~~~~~~~~~~----~~h~~~i~~v~~~~~-~~--  412 (564)
                      +..-   .-.+..+.|..       .  .........+  .+.+-|......+...    .+..+.+.|..|..+ ++  
T Consensus        90 i~i~---Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~  166 (323)
T KOG0322|consen   90 ISIH---SIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTF  166 (323)
T ss_pred             EEEe---eeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceE
Confidence            3321   11111111100       0  0011000000  0111122111111111    234566777776443 32  


Q ss_pred             EEEEEeCCCcEEEEeCCCC----------eeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-
Q 008467          413 LLASCSDDVTAKIWNMKQD----------KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-  481 (564)
Q Consensus       413 ~las~s~dg~i~iwd~~~~----------~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-  481 (564)
                      +++.|-++|.+.+||+.++          +.+.....|.+++.++.+.+....         =++|+.+..+..|++.- 
T Consensus       167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~r---------Gisgga~dkl~~~Sl~~s  237 (323)
T KOG0322|consen  167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDR---------GISGGADDKLVMYSLNHS  237 (323)
T ss_pred             EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcC---------CcCCCccccceeeeeccc
Confidence            4677888999999999887          333344568899999999864331         24677777888888753 


Q ss_pred             -CeEE--EEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec-CCCEEEEEEccCCCEEEEEEcCCcE
Q 008467          482 -GKLL--YSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTV  557 (564)
Q Consensus       482 -~~~~--~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~-~~~i~~~~w~~~g~~la~~~~~~~v  557 (564)
                       +.+.  ..+.-..-.|..+..-||++.+||+|.|++|+||+.++...+..+.- .++|.+++|+|+...+|+++.|++|
T Consensus       238 ~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rI  317 (323)
T KOG0322|consen  238 TGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARI  317 (323)
T ss_pred             cCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceE
Confidence             3221  12222334688999999999999999999999999999988777654 4679999999999999999999999


Q ss_pred             EEEEe
Q 008467          558 CVLDF  562 (564)
Q Consensus       558 ~v~~~  562 (564)
                      .+|++
T Consensus       318 SLWkL  322 (323)
T KOG0322|consen  318 SLWKL  322 (323)
T ss_pred             Eeeec
Confidence            99986

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=4.9e-17  Score=147.82  Aligned_cols=265  Identities=16%  Similarity=0.275  Sum_probs=185.3

Q ss_pred             CEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCC--CCCEEEEeeCCCcEEEEECCCcceeEEEee--cc-cCe
Q 008467          288 TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNK--KGDYLLTGSCDKTAIVWDVKTEEWKQQFEF--HS-GPT  361 (564)
Q Consensus       288 ~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~--~~-~~~  361 (564)
                      +.+|++..+|.|++||.. ++....+.+|...+..++|..  ..+.+++|+.||+|++||+++......+..  +. .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            578899999999999965 566778899999999999977  467899999999999999998665544433  32 234


Q ss_pred             EEEEcC-CCceEEEEe----CCCeEEEEEcCCCce-eeEe-cCCCcceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCee
Q 008467          362 LDVDWR-NNVSFATSS----TDNMIYVCKIGENRP-IKTF-AGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKY  433 (564)
Q Consensus       362 ~~~~~~-~~~~~~~~~----~d~~i~~~~~~~~~~-~~~~-~~h~~~i~~v~~~~~-~~~las~s~dg~i~iwd~~~~~~  433 (564)
                      .+++-. +...++++.    .+..+.+||++..+. +..+ ..|...|++++|+|. .++|+|||.||-|.|||++....
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E  200 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE  200 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence            455544 233344432    466789999987664 5544 579999999999995 47899999999999999976532


Q ss_pred             ---eeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCC------------CCEEEE
Q 008467          434 ---VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR------------EPVYSL  498 (564)
Q Consensus       434 ---~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~------------~~i~~~  498 (564)
                         +.....|...|..+.|...+..        -+.+-+...+..+|++..+.+...+....            .-+-. 
T Consensus       201 eDaL~~viN~~sSI~~igw~~~~yk--------rI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~-  271 (376)
T KOG1188|consen  201 EDALLHVINHGSSIHLIGWLSKKYK--------RIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVIN-  271 (376)
T ss_pred             hhhHHHhhcccceeeeeeeecCCcc--------eEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheee-
Confidence               3333457788999999876631        35667788999999998877554432110            00111 


Q ss_pred             EEcC-CCCEEEEEeC-CCcEEEEeCC---CCeE---EEEEecCC--CEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467          499 AFSP-TGEYLASGSL-DKSMHIWSLK---EGKI---VKTYTGNG--GIFEVCWNKEGDKIAACFANHTVCVLD  561 (564)
Q Consensus       499 ~~sp-dg~~lasgs~-dg~i~iw~~~---~~~~---~~~~~~~~--~i~~~~w~~~g~~la~~~~~~~v~v~~  561 (564)
                      ..+| ++..++.++. -+...++-+.   ++..   +..+.+.+  -|.++.|+..+..+.+|+.||.+.+|-
T Consensus       272 ~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk  344 (376)
T KOG1188|consen  272 EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK  344 (376)
T ss_pred             cccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence            1223 4455555554 4555555433   3332   23333322  256899999999999999999999996

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.75  E-value=3.7e-16  Score=141.25  Aligned_cols=264  Identities=17%  Similarity=0.276  Sum_probs=170.2

Q ss_pred             cCCCCeEEEEECCCCC-EEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEEC---CCc
Q 008467          273 EKSKDVTTLDWNGEGT-LLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV---KTE  348 (564)
Q Consensus       273 ~~~~~V~~l~~s~~g~-~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~---~~~  348 (564)
                      ....++.+++|||||+ +|.+...+-.|.||+...+....+...+..+.+++|+|+|++.+.++.-...-..++   ..-
T Consensus        89 eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W  168 (447)
T KOG4497|consen   89 EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAW  168 (447)
T ss_pred             cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHH
Confidence            3456799999999995 556677899999999887665555555566789999999998877765322111111   112


Q ss_pred             ceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCC-cceEEEEECCCCCEEEEEeCCCcEEEEe
Q 008467          349 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-GEVNCVKWDPTGSLLASCSDDVTAKIWN  427 (564)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-~~i~~v~~~~~~~~las~s~dg~i~iwd  427 (564)
                      .+...|........++.|.++..        .+.+|+.--.-.+..+  |. -.+..++|+|.+++|+.|+.|+.+||-+
T Consensus       169 ~ll~~f~~dT~DltgieWsPdg~--------~laVwd~~Leykv~aY--e~~lG~k~v~wsP~~qflavGsyD~~lrvln  238 (447)
T KOG4497|consen  169 ILLKEFKLDTIDLTGIEWSPDGN--------WLAVWDNVLEYKVYAY--ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLN  238 (447)
T ss_pred             HHHHhcCCCcccccCceECCCCc--------EEEEecchhhheeeee--eeccceeEEEeccccceEEeeccchhhhhhc
Confidence            23334444444556677865533        3445543222222222  22 3577899999999999999999998855


Q ss_pred             CCCCeeeeecc------------------------------------cc------------------------------c
Q 008467          428 MKQDKYVHDLR------------------------------------EH------------------------------S  441 (564)
Q Consensus       428 ~~~~~~~~~~~------------------------------------~~------------------------------~  441 (564)
                      --+.++..++-                                    +|                              .
T Consensus       239 h~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk  318 (447)
T KOG4497|consen  239 HFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPK  318 (447)
T ss_pred             eeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcc
Confidence            32222111110                                    00                              0


Q ss_pred             ccEEEEEEccCCCCCCCCCCcEEEEEEe--CCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 008467          442 KEIYTIRWSPTGSGTNNPNQQLILASAS--FDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIW  519 (564)
Q Consensus       442 ~~i~~i~~~p~~~~~~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw  519 (564)
                      ..+..++|+++.         .++++-.  .-+.+-+||+++.+.-..+ ....+|....|.|....|+.+....++++|
T Consensus       319 ~g~g~lafs~Ds---------~y~aTrnd~~PnalW~Wdlq~l~l~avL-iQk~piraf~WdP~~prL~vctg~srLY~W  388 (447)
T KOG4497|consen  319 CGAGKLAFSCDS---------TYAATRNDKYPNALWLWDLQNLKLHAVL-IQKHPIRAFEWDPGRPRLVVCTGKSRLYFW  388 (447)
T ss_pred             cccceeeecCCc---------eEEeeecCCCCceEEEEechhhhhhhhh-hhccceeEEEeCCCCceEEEEcCCceEEEE
Confidence            011223333322         3555543  2356899999876654333 345689999999999999988888889999


Q ss_pred             eCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCc
Q 008467          520 SLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHT  556 (564)
Q Consensus       520 ~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~  556 (564)
                      .......+..-...-.|.+++|+-+|..++.++.|.-
T Consensus       389 ~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDaf  425 (447)
T KOG4497|consen  389 APSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAF  425 (447)
T ss_pred             cCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCce
Confidence            9876555544333346889999999999999988863

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.75  E-value=8.9e-17  Score=164.26  Aligned_cols=211  Identities=20%  Similarity=0.236  Sum_probs=150.1

Q ss_pred             CCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCC---CcEEEEECCCcceeEEEeecccCeEEEEcCCCceE
Q 008467          296 DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD---KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF  372 (564)
Q Consensus       296 dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (564)
                      +..|++||.+|.....+..|...+.+.+|+|+|++|+.++.+   ..|.+||+.++....                    
T Consensus       183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~--------------------  242 (429)
T PRK01742        183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV--------------------  242 (429)
T ss_pred             eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE--------------------
Confidence            468999999887666778888999999999999999887654   368889887654211                    


Q ss_pred             EEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEe-CCCcEEEE--eCCCCeeeeecccccccEEEEEE
Q 008467          373 ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS-DDVTAKIW--NMKQDKYVHDLREHSKEIYTIRW  449 (564)
Q Consensus       373 ~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s-~dg~i~iw--d~~~~~~~~~~~~~~~~i~~i~~  449 (564)
                                         +..+.+|.   .+++|+|||+.|+.++ .+|.+.||  |+.++. ...+..+...+....|
T Consensus       243 -------------------l~~~~g~~---~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~w  299 (429)
T PRK01742        243 -------------------VASFRGHN---GAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSW  299 (429)
T ss_pred             -------------------EecCCCcc---CceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEE
Confidence                               11222332   3579999999887765 68876666  555554 3445566667788999


Q ss_pred             ccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 008467          450 SPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK  528 (564)
Q Consensus       450 ~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~  528 (564)
                      +|+|.        .+++++..+|..+||++... .....+ .+..  .+.+|||||++|+.++.++ +.+||+.+++...
T Consensus       300 SpDG~--------~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~  367 (429)
T PRK01742        300 SPDGQ--------SILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEV  367 (429)
T ss_pred             CCCCC--------EEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEE
Confidence            99885        24555556788888876532 222223 3433  5678999999999888766 5669999887543


Q ss_pred             EEecCCCEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467          529 TYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDF  562 (564)
Q Consensus       529 ~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~  562 (564)
                      .... .....++|+|+|++|++++.++.+.+|.+
T Consensus       368 lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~  400 (429)
T PRK01742        368 LSST-FLDESPSISPNGIMIIYSSTQGLGKVLQL  400 (429)
T ss_pred             ecCC-CCCCCceECCCCCEEEEEEcCCCceEEEE
Confidence            3222 23456889999999999998888877764

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.75  E-value=3.4e-15  Score=137.40  Aligned_cols=235  Identities=19%  Similarity=0.281  Sum_probs=160.5

Q ss_pred             CCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCC-CeEEEEEcCCCceeeEe
Q 008467          317 GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTD-NMIYVCKIGENRPIKTF  395 (564)
Q Consensus       317 ~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~i~~~~~~~~~~~~~~  395 (564)
                      ..+..+.|+.+...|..|+.|| .+++.................+..+-|......+.+-.+ +.++++..+....+-.+
T Consensus         6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~   84 (391)
T KOG2110|consen    6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEI   84 (391)
T ss_pred             cceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEEE
Confidence            3456667999888888888887 466655432211111111112333334433333222222 34666666554443332


Q ss_pred             cCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccc-cccEEEEEEccCCCCCCCCCCcEEEEE-Ee-CCC
Q 008467          396 AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH-SKEIYTIRWSPTGSGTNNPNQQLILAS-AS-FDS  472 (564)
Q Consensus       396 ~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~-~~~i~~i~~~p~~~~~~~~~~~~~l~s-~s-~dg  472 (564)
                      . ...+|.+|.++.  +.|+.+=.+. |.|||+++.+.++++..- ..+---.+++|...      + .+||- ++ ..|
T Consensus        85 ~-fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~------n-~ylAyp~s~t~G  153 (391)
T KOG2110|consen   85 F-FPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNA------N-CYLAYPGSTTSG  153 (391)
T ss_pred             e-cCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCC------C-ceEEecCCCCCc
Confidence            2 245788888874  4555565554 999999999999887643 22222334444321      1 14443 22 358


Q ss_pred             eEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCc-EEEEeCCCCeEEEEEecC---CCEEEEEEccCCCEE
Q 008467          473 TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKS-MHIWSLKEGKIVKTYTGN---GGIFEVCWNKEGDKI  548 (564)
Q Consensus       473 ~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~-i~iw~~~~~~~~~~~~~~---~~i~~~~w~~~g~~l  548 (564)
                      .|.|||+.+-+.+..+..|.+++-+++|+|+|.+|||||..|+ |+||.+.+|+.+..|+-.   ..|++++|+|++++|
T Consensus       154 dV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L  233 (391)
T KOG2110|consen  154 DVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFL  233 (391)
T ss_pred             eEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeE
Confidence            9999999999999999999999999999999999999999986 799999999999988643   358999999999999


Q ss_pred             EEEEcCCcEEEEEee
Q 008467          549 AACFANHTVCVLDFR  563 (564)
Q Consensus       549 a~~~~~~~v~v~~~~  563 (564)
                      ++.+..++|+||.+.
T Consensus       234 ~~sS~TeTVHiFKL~  248 (391)
T KOG2110|consen  234 AASSNTETVHIFKLE  248 (391)
T ss_pred             EEecCCCeEEEEEec
Confidence            999999999999764

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=2.6e-15  Score=137.60  Aligned_cols=275  Identities=24%  Similarity=0.406  Sum_probs=180.2

Q ss_pred             ceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC-CEEEEEeCC
Q 008467          218 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG-TLLATGSYD  296 (564)
Q Consensus       218 ~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-~~l~sg~~d  296 (564)
                      .+..++||+.-.-+|.+..|-+||||+-... .          ...++.      .....|+|++|-|.+ .-|+.|.. 
T Consensus       100 dlr~~aWhqH~~~fava~nddvVriy~ksst-~----------pt~Lks------~sQrnvtclawRPlsaselavgCr-  161 (445)
T KOG2139|consen  100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSST-C----------PTKLKS------VSQRNVTCLAWRPLSASELAVGCR-  161 (445)
T ss_pred             ceeeEeechhhhhhhhhccCcEEEEeccCCC-C----------Cceecc------hhhcceeEEEeccCCcceeeeeec-
Confidence            4667899997778899999999999985431 1          011221      224679999999954 56666665 


Q ss_pred             CeEEEEECCCcee---------------EeecCCCCCEEEEEeCCCCCEEEEeeC-CCcEEEEECCCcceeEEEeecccC
Q 008467          297 GQARIWSTNGDLK---------------CTLSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQQFEFHSGP  360 (564)
Q Consensus       297 g~i~vw~~~~~~~---------------~~~~~h~~~V~~l~~~~~~~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~  360 (564)
                      +-|.+|..+....               ..-.+| .+|++++|+++|..+++++. |..|+|||+.++..+.        
T Consensus       162 ~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~p--------  232 (445)
T KOG2139|consen  162 AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIP--------  232 (445)
T ss_pred             ceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccc--------
Confidence            5688997542211               112344 68999999999999999886 4679999998875332        


Q ss_pred             eEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccc
Q 008467          361 TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH  440 (564)
Q Consensus       361 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~  440 (564)
                                                     +..  -.-+.++-+.|||||..|+.++-|+..++|+...........--
T Consensus       233 -------------------------------L~~--~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lg  279 (445)
T KOG2139|consen  233 -------------------------------LIP--KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILG  279 (445)
T ss_pred             -------------------------------ccc--cCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceecc
Confidence                                           111  12345777999999999999999999999965433222222223


Q ss_pred             cccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC----C--------e---EEEEE------eC---CCCCEE
Q 008467          441 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL----G--------K---LLYSL------NG---HREPVY  496 (564)
Q Consensus       441 ~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~----~--------~---~~~~~------~~---h~~~i~  496 (564)
                      .+.|.+.+|+|.|+        .+|.+++..-  ++|.+..    +        +   .+..+      .+   ..+++.
T Consensus       280 sgrvqtacWspcGs--------fLLf~~sgsp--~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq  349 (445)
T KOG2139|consen  280 SGRVQTACWSPCGS--------FLLFACSGSP--RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQ  349 (445)
T ss_pred             CCceeeeeecCCCC--------EEEEEEcCCc--eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccc
Confidence            45899999999986        3555555433  3333211    0        0   11111      11   135789


Q ss_pred             EEEEcCCCCEEEEEeCC--------CcEEEEeCCCCeEEEEE----ecCCCEEEEEEcc---CCCEEEEEEcCCcEEEEE
Q 008467          497 SLAFSPTGEYLASGSLD--------KSMHIWSLKEGKIVKTY----TGNGGIFEVCWNK---EGDKIAACFANHTVCVLD  561 (564)
Q Consensus       497 ~~~~spdg~~lasgs~d--------g~i~iw~~~~~~~~~~~----~~~~~i~~~~w~~---~g~~la~~~~~~~v~v~~  561 (564)
                      +++|.|.|.+||+--..        +.|.+||.+.--.+...    .+....--++|+|   +|..|.+|.+.|.+.-|+
T Consensus       350 ~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~yp  429 (445)
T KOG2139|consen  350 CLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYP  429 (445)
T ss_pred             eeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeee
Confidence            99999999999985433        34677877654332221    1122233456655   678999999999988776


Q ss_pred             e
Q 008467          562 F  562 (564)
Q Consensus       562 ~  562 (564)
                      +
T Consensus       430 l  430 (445)
T KOG2139|consen  430 L  430 (445)
T ss_pred             e
Confidence            5

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.74  E-value=1.5e-14  Score=133.16  Aligned_cols=233  Identities=22%  Similarity=0.345  Sum_probs=171.1

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEe-ecCCCCCEEEEEeCCCCCEEEEeeCC--CcEEEEECCCcceeE
Q 008467          276 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCT-LSKHKGPIFSLKWNKKGDYLLTGSCD--KTAIVWDVKTEEWKQ  352 (564)
Q Consensus       276 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~s~D--~~v~iwd~~~~~~~~  352 (564)
                      ..+..+.|+.+...|..|+.||. ++++.+...++. .......|.-+-|+..  .++..+.+  +.+++.+.+.+..+.
T Consensus         6 ~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~IC   82 (391)
T KOG2110|consen    6 PTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTIC   82 (391)
T ss_pred             cceeeeeeccceeEEEccCCCce-eEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCceEE
Confidence            45777789999999999999985 566544322211 1111223444556543  44444444  458899888776665


Q ss_pred             EEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecC---CCcceEEEEECCCCCEEEEE--eCCCcEEEEe
Q 008467          353 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG---HQGEVNCVKWDPTGSLLASC--SDDVTAKIWN  427 (564)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~---h~~~i~~v~~~~~~~~las~--s~dg~i~iwd  427 (564)
                      .+.+. .+++++....+..+ .+-.+ .|+++|+..-+++.++..   +...+.++.+++.+.++|-=  ...|.|.|||
T Consensus        83 e~~fp-t~IL~VrmNr~RLv-V~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d  159 (391)
T KOG2110|consen   83 EIFFP-TSILAVRMNRKRLV-VCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFD  159 (391)
T ss_pred             EEecC-CceEEEEEccceEE-EEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEE
Confidence            54432 35666666544433 33333 399999998887776643   34456667777777788753  3478999999


Q ss_pred             CCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCe-EEEEeCCCCeEEEEEeCCC--CCEEEEEEcCCC
Q 008467          428 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDST-VKLWDVELGKLLYSLNGHR--EPVYSLAFSPTG  504 (564)
Q Consensus       428 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~h~--~~i~~~~~spdg  504 (564)
                      ..+-+++..+.+|.+++-+++|+|+|.         +|||+|..|+ |||+.+.+|+.++.++...  ..|++++|+||+
T Consensus       160 ~~nl~~v~~I~aH~~~lAalafs~~G~---------llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds  230 (391)
T KOG2110|consen  160 TINLQPVNTINAHKGPLAALAFSPDGT---------LLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDS  230 (391)
T ss_pred             cccceeeeEEEecCCceeEEEECCCCC---------EEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCC
Confidence            999999999999999999999999996         8999999997 6999999999999986433  358999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCC
Q 008467          505 EYLASGSLDKSMHIWSLKE  523 (564)
Q Consensus       505 ~~lasgs~dg~i~iw~~~~  523 (564)
                      ++|++.|..++|+||.+.+
T Consensus       231 ~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  231 QFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             CeEEEecCCCeEEEEEecc
Confidence            9999999999999999864

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.74  E-value=2e-16  Score=161.65  Aligned_cols=213  Identities=17%  Similarity=0.225  Sum_probs=143.7

Q ss_pred             CCCeEEEEECCCCCEEEEEeCC---CeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEee-CCCcEEEE--ECCCc
Q 008467          275 SKDVTTLDWNGEGTLLATGSYD---GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVW--DVKTE  348 (564)
Q Consensus       275 ~~~V~~l~~s~~g~~l~sg~~d---g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~D~~v~iw--d~~~~  348 (564)
                      ...+.+.+|||||+.|+.++.+   ..|++|+..+.....+....+....++|+|+|++|+.++ .+|.+.||  |+.++
T Consensus       203 ~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~  282 (429)
T PRK01742        203 SQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGG  282 (429)
T ss_pred             CCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCC
Confidence            3468899999999999988764   369999986543323332333345689999999888764 57766655  43332


Q ss_pred             ceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEe-CCCcEEEEe
Q 008467          349 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS-DDVTAKIWN  427 (564)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s-~dg~i~iwd  427 (564)
                      .                                          ...+..+...+.++.|+|||+.|+.++ .+|..+||+
T Consensus       283 ~------------------------------------------~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~  320 (429)
T PRK01742        283 T------------------------------------------PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYR  320 (429)
T ss_pred             C------------------------------------------eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEE
Confidence            2                                          122334455677899999999876655 578889998


Q ss_pred             CCCCe-eeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCE
Q 008467          428 MKQDK-YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY  506 (564)
Q Consensus       428 ~~~~~-~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~  506 (564)
                      +.... ....+ .+..  +...|+|+|.         .|+..+.++ +.+||+.+++.......+  ...+++|+|||++
T Consensus       321 ~~~~~~~~~~l-~~~~--~~~~~SpDG~---------~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~  385 (429)
T PRK01742        321 MSASGGGASLV-GGRG--YSAQISADGK---------TLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIM  385 (429)
T ss_pred             EECCCCCeEEe-cCCC--CCccCCCCCC---------EEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCE
Confidence            65322 12222 3332  4567888875         455555555 556999888754322222  2356889999999


Q ss_pred             EEEEeCCCcEEEEeC--CCCeEEEEEecC-CCEEEEEEccC
Q 008467          507 LASGSLDKSMHIWSL--KEGKIVKTYTGN-GGIFEVCWNKE  544 (564)
Q Consensus       507 lasgs~dg~i~iw~~--~~~~~~~~~~~~-~~i~~~~w~~~  544 (564)
                      |+.++.++.+.+|.+  .+|+....+..+ +.+.+++|+|-
T Consensus       386 i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        386 IIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             EEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence            999999998888875  357777777653 45788999985

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=9.7e-16  Score=133.03  Aligned_cols=213  Identities=17%  Similarity=0.280  Sum_probs=161.9

Q ss_pred             CEEEEEeCCCCCEEEEeeCCCcEEEEECCCc----------ceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcC
Q 008467          318 PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE----------EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIG  387 (564)
Q Consensus       318 ~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~  387 (564)
                      .|++-+|+|.+++|++|+.+|+|.+..+.+-          ..+-.++.|.+++..+.+.++  |..++.||.|+-|...
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~--~Lls~gdG~V~gw~W~   89 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD--FLLSGGDGLVYGWEWN   89 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh--heeeccCceEEEeeeh
Confidence            4666789999999999999999999987531          223345788999999988744  4445567999888765


Q ss_pred             CCc-------------eeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCC
Q 008467          388 ENR-------------PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS  454 (564)
Q Consensus       388 ~~~-------------~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~  454 (564)
                      +..             |.++=.-.--+|+++-..|..+-++.++.|+.+..||+.+++..+++++|+..+.++.-.....
T Consensus        90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~  169 (325)
T KOG0649|consen   90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANG  169 (325)
T ss_pred             hhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCc
Confidence            421             1111011123689999999888888888999999999999999999999999999997633221


Q ss_pred             CCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCC----------CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 008467          455 GTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH----------REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG  524 (564)
Q Consensus       455 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h----------~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~  524 (564)
                               -++||+.||++||||.++++++..+...          ...|-+++-  +..||++|+.- .+.+|+++..
T Consensus       170 ---------qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp-~lslwhLrss  237 (325)
T KOG0649|consen  170 ---------QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGP-KLSLWHLRSS  237 (325)
T ss_pred             ---------ceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCC-ceeEEeccCC
Confidence                     4789999999999999999988776422          124556655  45599887755 5899999999


Q ss_pred             eEEEEEecCCCEEEEEEccC
Q 008467          525 KIVKTYTGNGGIFEVCWNKE  544 (564)
Q Consensus       525 ~~~~~~~~~~~i~~~~w~~~  544 (564)
                      +...+|.-.+.+-.+.|..|
T Consensus       238 e~t~vfpipa~v~~v~F~~d  257 (325)
T KOG0649|consen  238 ESTCVFPIPARVHLVDFVDD  257 (325)
T ss_pred             CceEEEecccceeEeeeecc
Confidence            99999988888888888543

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.74  E-value=9.3e-18  Score=158.13  Aligned_cols=227  Identities=21%  Similarity=0.343  Sum_probs=190.3

Q ss_pred             EEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCC
Q 008467          320 FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ  399 (564)
Q Consensus       320 ~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~  399 (564)
                      +.+.++.+|.+|+.|+.-|.|..+|..++.+...+.. ...+.++.|..+..|++....+.+++||-... -+.-++. .
T Consensus       133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~Gt-ElHClk~-~  209 (545)
T KOG1272|consen  133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQKKYVYVYDNNGT-ELHCLKR-H  209 (545)
T ss_pred             eeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhhhceEEEecCCCc-EEeehhh-c
Confidence            5688999999999999999999999999987765543 23567888887777777788889999986433 2222332 3


Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeC
Q 008467          400 GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV  479 (564)
Q Consensus       400 ~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~  479 (564)
                      ..|..+.|-|..-+|+++++.|.++--|+.+++.+..+..-.+.+..++-.|-..         ++-.|...|+|.+|..
T Consensus       210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na---------Vih~GhsnGtVSlWSP  280 (545)
T KOG1272|consen  210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA---------VIHLGHSNGTVSLWSP  280 (545)
T ss_pred             CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccc---------eEEEcCCCceEEecCC
Confidence            4688899999999999999999999999999999999988888888888777654         7888999999999999


Q ss_pred             CCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEE
Q 008467          480 ELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCV  559 (564)
Q Consensus       480 ~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v  559 (564)
                      .+.+.+..+..|.++|.+|++.++|+|+||.|.|..|+|||++.-..+.++....+...+++|..| .||++.++ .|.|
T Consensus       281 ~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg-lLA~~~G~-~v~i  358 (545)
T KOG1272|consen  281 NSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG-LLALSYGD-HVQI  358 (545)
T ss_pred             CCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc-ceeeecCC-eeee
Confidence            998888888899999999999999999999999999999999988878887766677889998877 56666555 6777


Q ss_pred             E
Q 008467          560 L  560 (564)
Q Consensus       560 ~  560 (564)
                      |
T Consensus       359 w  359 (545)
T KOG1272|consen  359 W  359 (545)
T ss_pred             e
Confidence            7

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.73  E-value=6.8e-16  Score=158.88  Aligned_cols=276  Identities=20%  Similarity=0.290  Sum_probs=200.0

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEECC-CceeEeecCCC---CCEEEEEeCC--CCCEEEEeeCCCcEEEEECCC---
Q 008467          277 DVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHK---GPIFSLKWNK--KGDYLLTGSCDKTAIVWDVKT---  347 (564)
Q Consensus       277 ~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~---~~V~~l~~~~--~~~~l~s~s~D~~v~iwd~~~---  347 (564)
                      +-..+.|+|=...++++...-.|+|||.+ +.....|..+.   ..|+.+.+-.  +...+++|+.||.|+||+-..   
T Consensus      1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred             CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence            34567788877889998888899999964 44544454332   4578887754  345789999999999996432   


Q ss_pred             --cceeEEEee-------cccCeEEEEcCCC-ceEEEEeCCCeEEEEEcCCCceeeEec-CCCcceEEEEECC-CCCEEE
Q 008467          348 --EEWKQQFEF-------HSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDP-TGSLLA  415 (564)
Q Consensus       348 --~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~-~h~~~i~~v~~~~-~~~~la  415 (564)
                        .+++..+..       ..+...-++|... ..+.+++.-..|++||......+..+. +...-|+++.-+. .|+.++
T Consensus      1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~ 1225 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIA 1225 (1387)
T ss_pred             CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEE
Confidence              223333321       1122356788644 455666667789999998877666554 3344567665543 469999


Q ss_pred             EEeCCCcEEEEeCCCC---eeeeeccccccc--EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE--EEEE
Q 008467          416 SCSDDVTAKIWNMKQD---KYVHDLREHSKE--IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL--LYSL  488 (564)
Q Consensus       416 s~s~dg~i~iwd~~~~---~~~~~~~~~~~~--i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~  488 (564)
                      .|-.||.+|+||.+..   ..+...+.|+..  |..+.+.+.|-.        -|++|+.||.|++||++....  ..++
T Consensus      1226 AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~--------elvSgs~~G~I~~~DlR~~~~e~~~~i 1297 (1387)
T KOG1517|consen 1226 AGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLG--------ELVSGSQDGDIQLLDLRMSSKETFLTI 1297 (1387)
T ss_pred             EeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCc--------ceeeeccCCeEEEEecccCccccccee
Confidence            9999999999998754   346677888877  999999887753        489999999999999997422  2233


Q ss_pred             eCCC--C-CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec--------CCCEEEEEEccCCCEEEEEEcCCcE
Q 008467          489 NGHR--E-PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG--------NGGIFEVCWNKEGDKIAACFANHTV  557 (564)
Q Consensus       489 ~~h~--~-~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~--------~~~i~~~~w~~~g~~la~~~~~~~v  557 (564)
                      ..|.  + ..+++..+++...+|+|+. +.|+||++... .+..+..        .+.+.+++|+|---.||+|+.|..|
T Consensus      1298 v~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~-~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V 1375 (1387)
T KOG1517|consen 1298 VAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGE-QLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTV 1375 (1387)
T ss_pred             eeccccCccceeeeeccCCCeeeecCc-ceEEEEecChh-hhcccccCcccccCcCCCcceeeecchhHhhhhccCCceE
Confidence            3343  3 4899999999999999999 99999998643 3333221        3457899999999999999999999


Q ss_pred             EEEEe
Q 008467          558 CVLDF  562 (564)
Q Consensus       558 ~v~~~  562 (564)
                      +||..
T Consensus      1376 ~iYs~ 1380 (1387)
T KOG1517|consen 1376 SIYSC 1380 (1387)
T ss_pred             EEeec
Confidence            99964

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.72  E-value=7.6e-16  Score=137.08  Aligned_cols=230  Identities=26%  Similarity=0.472  Sum_probs=163.8

Q ss_pred             cCCccceEEEEECCCC-----CEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC-C
Q 008467          213 EGHTSEVCACAWSPAG-----SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-E  286 (564)
Q Consensus       213 ~~h~~~V~~~~~sp~~-----~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~  286 (564)
                      ..|.-+++.+.|.|+.     .+|||.  +..+|+|.+.......  .  ..  ..+...  .......++|+.+|+. +
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~--~--~~--~~L~~~--kns~~~aPlTSFDWne~d  162 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRV--E--LQ--SVLNNN--KNSEFCAPLTSFDWNEVD  162 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCce--e--hh--hhhccC--cccccCCcccccccccCC
Confidence            3577889999999975     366664  4589999986421100  0  00  001111  1123356899999997 7


Q ss_pred             CCEEEEEeCCCeEEEEECCC----ceeEeecCCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCcceeEEE-eec--c
Q 008467          287 GTLLATGSYDGQARIWSTNG----DLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQF-EFH--S  358 (564)
Q Consensus       287 g~~l~sg~~dg~i~vw~~~~----~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~-~~~--~  358 (564)
                      -+++.+.+-|-+..||+.+.    ..+..+..|..+|+.++|...+ +.|++++.||+||++|++..+-...+ +..  .
T Consensus       163 p~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~  242 (364)
T KOG0290|consen  163 PNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPS  242 (364)
T ss_pred             cceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCC
Confidence            78999999999999999754    3577889999999999999866 46899999999999999876533322 211  2


Q ss_pred             cCeEEEEcCCC--ceEEEE-eCCCeEEEEEcCC-CceeeEecCCCcceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCee
Q 008467          359 GPTLDVDWRNN--VSFATS-STDNMIYVCKIGE-NRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKY  433 (564)
Q Consensus       359 ~~~~~~~~~~~--~~~~~~-~~d~~i~~~~~~~-~~~~~~~~~h~~~i~~v~~~~~~-~~las~s~dg~i~iwd~~~~~~  433 (564)
                      .+.+-+.|...  ..+++- .....|.+.|++. ..|+..+++|.+.|+.++|.|.. ..|.||++|..+-|||+.+.-.
T Consensus       243 ~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~  322 (364)
T KOG0290|consen  243 TPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR  322 (364)
T ss_pred             CcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence            35667778543  223333 3445678888875 45888999999999999999964 6799999999999999875322


Q ss_pred             ------eeecccccccEEEEEEccCC
Q 008467          434 ------VHDLREHSKEIYTIRWSPTG  453 (564)
Q Consensus       434 ------~~~~~~~~~~i~~i~~~p~~  453 (564)
                            +.... ..++|..+.|+|..
T Consensus       323 ~~~~dPilay~-a~~EVNqi~Ws~~~  347 (364)
T KOG0290|consen  323 ENGEDPILAYT-AGGEVNQIQWSSSQ  347 (364)
T ss_pred             cCCCCchhhhh-ccceeeeeeecccC
Confidence                  11122 45789999998754

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=8e-17  Score=152.80  Aligned_cols=290  Identities=23%  Similarity=0.360  Sum_probs=210.2

Q ss_pred             eEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC--CC
Q 008467          210 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--EG  287 (564)
Q Consensus       210 ~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~--~g  287 (564)
                      ..|.+|.+.|+.+.|+..|..|+|||.|..+.+||+..+.......                .+|...|--..|-|  +.
T Consensus       136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~----------------SGH~~NvfQaKFiP~s~d  199 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFE----------------SGHCNNVFQAKFIPFSGD  199 (559)
T ss_pred             hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccc----------------cccccchhhhhccCCCCC
Confidence            3578999999999999999999999999999999998754321111                12233344344544  34


Q ss_pred             CEEEEEeCCCeEEEEECC--Cce--eEeecCCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCcceeEEEeec--ccC
Q 008467          288 TLLATGSYDGQARIWSTN--GDL--KCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFH--SGP  360 (564)
Q Consensus       288 ~~l~sg~~dg~i~vw~~~--~~~--~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~--~~~  360 (564)
                      ..+++++.||.+|+=...  +..  ...+..|.++|.-++.-|... -|++++.|+.+.-.|++.+.....+.+.  ..+
T Consensus       200 ~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~  279 (559)
T KOG1334|consen  200 RTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEK  279 (559)
T ss_pred             cCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCc
Confidence            678899999999987642  322  345778999999999998775 4899999999999999876544333221  111


Q ss_pred             ------eEEEEcCCCceEEEEeCCCeEEEEEcCC------CceeeEecCCC------cceEEEEECCCCCEEEEEeCCCc
Q 008467          361 ------TLDVDWRNNVSFATSSTDNMIYVCKIGE------NRPIKTFAGHQ------GEVNCVKWDPTGSLLASCSDDVT  422 (564)
Q Consensus       361 ------~~~~~~~~~~~~~~~~~d~~i~~~~~~~------~~~~~~~~~h~------~~i~~v~~~~~~~~las~s~dg~  422 (564)
                            .+.++..+...|++++.|..+++|+...      ..++..|..|.      -.|+|++|+.++.-|.+.-.|-.
T Consensus       280 ~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~  359 (559)
T KOG1334|consen  280 ERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDED  359 (559)
T ss_pred             cceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccc
Confidence                  2344556677899999999999998753      22344444332      35899999988877777777888


Q ss_pred             EEEEeCCC--C----------eeeee-cccccc--cEEEEEE-ccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE
Q 008467          423 AKIWNMKQ--D----------KYVHD-LREHSK--EIYTIRW-SPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY  486 (564)
Q Consensus       423 i~iwd~~~--~----------~~~~~-~~~~~~--~i~~i~~-~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~  486 (564)
                      |.++.-..  +          .++.. +++|..  .|..+-| -|..         .+++|||.-|.|.||+-.+++.+.
T Consensus       360 IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs---------EyVvSGSDCGhIFiW~K~t~eii~  430 (559)
T KOG1334|consen  360 IYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS---------EYVVSGSDCGHIFIWDKKTGEIIR  430 (559)
T ss_pred             eEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCcc---------ceEEecCccceEEEEecchhHHHH
Confidence            98885321  1          22222 566643  3444433 2322         378999999999999999999888


Q ss_pred             EEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 008467          487 SLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG  524 (564)
Q Consensus       487 ~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~  524 (564)
                      -+.+...-|+||--+|--..||+.|-|.-|+||...+.
T Consensus       431 ~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~  468 (559)
T KOG1334|consen  431 FMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTA  468 (559)
T ss_pred             HhhcccceEeccCCCCCCchhhccCCccceeeecCCcc
Confidence            88887778999999999999999999999999987543

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=3.7e-15  Score=136.61  Aligned_cols=239  Identities=19%  Similarity=0.371  Sum_probs=162.2

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecC-CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEE
Q 008467          276 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSK-HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF  354 (564)
Q Consensus       276 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~-h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  354 (564)
                      .++..++|++.-..++++..|-.||+|+.+......+.. ....|++++|.|.+..-++.+.-+-|.+|.........  
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~--  176 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNAN--  176 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccc--
Confidence            457889999988889999999999999987665555532 34679999999987655555556779999764211000  


Q ss_pred             eecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCC--ceeeEecCCCcceEEEEECCCCCEEEEEeC-CCcEEEEeCCCC
Q 008467          355 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGEN--RPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAKIWNMKQD  431 (564)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~--~~~~~~~~h~~~i~~v~~~~~~~~las~s~-dg~i~iwd~~~~  431 (564)
                           .                   .++   ....  ..+....|| ..|++++|++||..++++|- |..|.|||..++
T Consensus       177 -----r-------------------~~~---~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg  228 (445)
T KOG2139|consen  177 -----R-------------------NIR---MMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTG  228 (445)
T ss_pred             -----c-------------------ccc---cccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCC
Confidence                 0                   000   0001  112234456 68999999999999999886 678999999988


Q ss_pred             eeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-CeEEEEEeCCCCCEEEEEEcCCCCEEE-E
Q 008467          432 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-GKLLYSLNGHREPVYSLAFSPTGEYLA-S  509 (564)
Q Consensus       432 ~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~h~~~i~~~~~spdg~~la-s  509 (564)
                      ..+.-...-.+.+.-+.|+|++.         +|..+..|+..++|+... ..+..-.. ..+.|...+|+|+|++|. +
T Consensus       229 ~~~pL~~~glgg~slLkwSPdgd---------~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~  298 (445)
T KOG2139|consen  229 QKIPLIPKGLGGFSLLKWSPDGD---------VLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFA  298 (445)
T ss_pred             CcccccccCCCceeeEEEcCCCC---------EEEEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEE
Confidence            77654434456788999999986         677889999999996442 22222222 234899999999998875 3


Q ss_pred             EeCCCcEEEEeCC----CCe-----------EEEEE------ec----CCCEEEEEEccCCCEEEEEEcCCc
Q 008467          510 GSLDKSMHIWSLK----EGK-----------IVKTY------TG----NGGIFEVCWNKEGDKIAACFANHT  556 (564)
Q Consensus       510 gs~dg~i~iw~~~----~~~-----------~~~~~------~~----~~~i~~~~w~~~g~~la~~~~~~~  556 (564)
                      .+..-.  +|.+.    .+.           ++..+      .+    .+++-.++|+|.|.+||+.+..+.
T Consensus       299 ~sgsp~--lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~  368 (445)
T KOG2139|consen  299 CSGSPR--LYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS  368 (445)
T ss_pred             EcCCce--EEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence            333333  33321    111           11111      11    245778999999999999987654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.69  E-value=4.8e-14  Score=139.71  Aligned_cols=266  Identities=15%  Similarity=0.220  Sum_probs=161.2

Q ss_pred             cceEEEEECCCCCEEEEEE-CCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeC
Q 008467          217 SEVCACAWSPAGSLLASGS-GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY  295 (564)
Q Consensus       217 ~~V~~~~~sp~~~~lasgs-~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~  295 (564)
                      +....++++|++++|+.++ .++.|.+|++....        .+.  .....     ........++|+|+|+++++++.
T Consensus        35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g--------~l~--~~~~~-----~~~~~p~~i~~~~~g~~l~v~~~   99 (330)
T PRK11028         35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDG--------ALT--FAAES-----PLPGSPTHISTDHQGRFLFSASY   99 (330)
T ss_pred             CCCccEEECCCCCEEEEEECCCCcEEEEEECCCC--------ceE--Eeeee-----cCCCCceEEEECCCCCEEEEEEc
Confidence            4566789999999887665 58889999985211        000  11111     01124568999999998888765


Q ss_pred             -CCeEEEEECC--Cce---eEeecCCCCCEEEEEeCCCCCEEEEe-eCCCcEEEEECCCcceeEEEeecccCeEEEEcCC
Q 008467          296 -DGQARIWSTN--GDL---KCTLSKHKGPIFSLKWNKKGDYLLTG-SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN  368 (564)
Q Consensus       296 -dg~i~vw~~~--~~~---~~~~~~h~~~V~~l~~~~~~~~l~s~-s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  368 (564)
                       ++.|.+|+.+  +..   ...+. +.....+++++|++++++++ ..++.|.+||+.+........             
T Consensus       100 ~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~-------------  165 (330)
T PRK11028        100 NANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE-------------  165 (330)
T ss_pred             CCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC-------------
Confidence             7899999875  222   22222 22345778899999988654 456899999987532111000             


Q ss_pred             CceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC-CCcEEEEeCCC--C--eeeeeccccc--
Q 008467          369 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAKIWNMKQ--D--KYVHDLREHS--  441 (564)
Q Consensus       369 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~-dg~i~iwd~~~--~--~~~~~~~~~~--  441 (564)
                                          ...+....  ......++|+|+|++++++.. +++|.+|+++.  +  +.+..+..+.  
T Consensus       166 --------------------~~~~~~~~--g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~  223 (330)
T PRK11028        166 --------------------PAEVTTVE--GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPAD  223 (330)
T ss_pred             --------------------CCceecCC--CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCc
Confidence                                00000001  122456899999999877776 99999999873  2  2233332211  


Q ss_pred             ----ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCC---CCCEEEEEEcCCCCEEEEEeC-C
Q 008467          442 ----KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH---REPVYSLAFSPTGEYLASGSL-D  513 (564)
Q Consensus       442 ----~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h---~~~i~~~~~spdg~~lasgs~-d  513 (564)
                          .....+.++|++.        .++++...++.|.+|++.......++.++   ......++|+|||++|+++.. +
T Consensus       224 ~~~~~~~~~i~~~pdg~--------~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~  295 (330)
T PRK11028        224 FSDTRWAADIHITPDGR--------HLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKS  295 (330)
T ss_pred             CCCCccceeEEECCCCC--------EEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccC
Confidence                1123467777764        33443345789999998643221222222   123457899999999988775 8


Q ss_pred             CcEEEEeCC--CCeE--EEEEecCCCEEEEEE
Q 008467          514 KSMHIWSLK--EGKI--VKTYTGNGGIFEVCW  541 (564)
Q Consensus       514 g~i~iw~~~--~~~~--~~~~~~~~~i~~~~w  541 (564)
                      ++|.+|++.  +|.+  +..+.......++++
T Consensus       296 ~~v~v~~~~~~~g~l~~~~~~~~g~~P~~~~~  327 (330)
T PRK11028        296 HHISVYEIDGETGLLTELGRYAVGQGPMWVSV  327 (330)
T ss_pred             CcEEEEEEcCCCCcEEEccccccCCCceEEEE
Confidence            999999874  4443  333333333344433

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.69  E-value=8e-15  Score=132.47  Aligned_cols=236  Identities=20%  Similarity=0.325  Sum_probs=171.5

Q ss_pred             cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC
Q 008467          217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD  296 (564)
Q Consensus       217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d  296 (564)
                      .+|+|.||++|++.+|.+-....+.||.......           +.   .......|...|+.++|+|..+.|++++.|
T Consensus        11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~-----------w~---~~htls~Hd~~vtgvdWap~snrIvtcs~d   76 (361)
T KOG1523|consen   11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL-----------WE---PAHTLSEHDKIVTGVDWAPKSNRIVTCSHD   76 (361)
T ss_pred             CceeeeeecCCCceEEeccCCceEEEEEecCCCC-----------ce---eceehhhhCcceeEEeecCCCCceeEccCC
Confidence            6799999999999999999999999998654321           00   111234567889999999999999999999


Q ss_pred             CeEEEEEC-CC-c--eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceE
Q 008467          297 GQARIWST-NG-D--LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF  372 (564)
Q Consensus       297 g~i~vw~~-~~-~--~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (564)
                      ...+||.. .+ .  ....+..++..++++.|+|.++.|++||.-+.|.||-.+...               +       
T Consensus        77 rnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~EN---------------d-------  134 (361)
T KOG1523|consen   77 RNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEN---------------D-------  134 (361)
T ss_pred             CCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccc---------------c-------
Confidence            99999986 33 2  233567799999999999999999999999999988654321               0       


Q ss_pred             EEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCC------------------Ceee
Q 008467          373 ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ------------------DKYV  434 (564)
Q Consensus       373 ~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~------------------~~~~  434 (564)
                                 |-+.  +.+  -+.+.+.|++++|+|++-+|+.||.|+..|++..--                  +...
T Consensus       135 -----------WWVs--Khi--kkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm  199 (361)
T KOG1523|consen  135 -----------WWVS--KHI--KKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLM  199 (361)
T ss_pred             -----------eehh--hhh--CCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHH
Confidence                       1000  001  122457899999999999999999999999997411                  1122


Q ss_pred             eecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-EEEEEeCCCCCEEEEEEcCCCCEEEEEeCC
Q 008467          435 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-LLYSLNGHREPVYSLAFSPTGEYLASGSLD  513 (564)
Q Consensus       435 ~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~h~~~i~~~~~spdg~~lasgs~d  513 (564)
                      .++....+.+..+.|+|.|.         .|+-.+.|.++.+-|..... .+..+..-.-|..++.|-.+.. ++.++.|
T Consensus       200 ~E~~~~ggwvh~v~fs~sG~---------~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~-vv~ag~~  269 (361)
T KOG1523|consen  200 SEASSSGGWVHGVLFSPSGN---------RLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENS-VVAAGYD  269 (361)
T ss_pred             HhhccCCCceeeeEeCCCCC---------EeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCCc-eeecCCC
Confidence            23334567799999999886         68889999999999987654 3333332336777777754433 3334444

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=9.5e-16  Score=143.59  Aligned_cols=195  Identities=25%  Similarity=0.330  Sum_probs=141.6

Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEE-CCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeec
Q 008467          279 TTLDWNGEGTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH  357 (564)
Q Consensus       279 ~~l~~s~~g~~l~sg~~dg~i~vw~-~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~  357 (564)
                      .+++|+++|..+++|+.||.+|||+ .+.........|.+.|.+|.|+|+|+.|++.+.| ..+||+++++..+......
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            7899999999999999999999999 5555556778899999999999999999999999 9999999988443322110


Q ss_pred             ccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCC-----CEEEEEeCCCcEEEEeCCCCe
Q 008467          358 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-----SLLASCSDDVTAKIWNMKQDK  432 (564)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~-----~~las~s~dg~i~iwd~~~~~  432 (564)
                      .         .+                              ..+..+.|+.|+     .+++.-..-+.|+.|++....
T Consensus       227 ~---------k~------------------------------~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~  267 (398)
T KOG0771|consen  227 S---------KD------------------------------EMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWS  267 (398)
T ss_pred             c---------cc------------------------------hhhhhceecccCCCceEEEEEecCCCCceeEEEeeeec
Confidence            0         00                              011223333333     122222233344444432211


Q ss_pred             -----eeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEE-eCCCCCEEEEEEcCCCCE
Q 008467          433 -----YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-NGHREPVYSLAFSPTGEY  506 (564)
Q Consensus       433 -----~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~h~~~i~~~~~spdg~~  506 (564)
                           .......-...|.+++.+++|.         ++|.|+.||.|-|++..+-++++.. ..|...|+.+.|+||.++
T Consensus       268 ~~~~l~~~~~~~~~~siSsl~VS~dGk---------f~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~  338 (398)
T KOG0771|consen  268 GSNFLRLRKKIKRFKSISSLAVSDDGK---------FLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRY  338 (398)
T ss_pred             cccccchhhhhhccCcceeEEEcCCCc---------EEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCc
Confidence                 1111122335689999999986         8999999999999999887776554 679999999999999999


Q ss_pred             EEEEeCCCcEEEEeCC
Q 008467          507 LASGSLDKSMHIWSLK  522 (564)
Q Consensus       507 lasgs~dg~i~iw~~~  522 (564)
                      +++-+.|.++.+..+.
T Consensus       339 ~~svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  339 LASVSSDNEAAVTKLA  354 (398)
T ss_pred             ccccccCCceeEEEEe
Confidence            9999999988888765

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.68  E-value=7.6e-16  Score=150.30  Aligned_cols=234  Identities=18%  Similarity=0.328  Sum_probs=169.5

Q ss_pred             CCCEEEE--EeCCCeEEEEECC--CceeE-eec--CCCCCEEEEEeCC-CCCEEEEeeCCCcEEEEECCCcceeEEEeec
Q 008467          286 EGTLLAT--GSYDGQARIWSTN--GDLKC-TLS--KHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH  357 (564)
Q Consensus       286 ~g~~l~s--g~~dg~i~vw~~~--~~~~~-~~~--~h~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~  357 (564)
                      +...+|+  ++.-|.|-|++++  |++.. .+.  .....|+.+.|+| +..+|+.++.||.|++|.+..+.....    
T Consensus       590 n~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~----  665 (1012)
T KOG1445|consen  590 NNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN----  665 (1012)
T ss_pred             ccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc----
Confidence            4445554  3556899999865  33221 111  2345799999999 557899999999999998876542211    


Q ss_pred             ccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCeeeee
Q 008467          358 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKYVHD  436 (564)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~-~~~las~s~dg~i~iwd~~~~~~~~~  436 (564)
                                                    ...|-..+.+|...|.++.|+|- ...|++++.|.+|++||+.+.+....
T Consensus       666 ------------------------------~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~  715 (1012)
T KOG1445|consen  666 ------------------------------EMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSR  715 (1012)
T ss_pred             ------------------------------cCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhhe
Confidence                                          13456678899999999999995 46789999999999999999998889


Q ss_pred             cccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE-EEEEeCC-CCCEEEEEEcCCCCEEEEEeCCC
Q 008467          437 LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-LYSLNGH-REPVYSLAFSPTGEYLASGSLDK  514 (564)
Q Consensus       437 ~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~h-~~~i~~~~~spdg~~lasgs~dg  514 (564)
                      +.+|+..|..++|+|+|.         .+|+.+.||+|++|+.+++.. ++.-++- ...--.|.|.-||+++++.+.|.
T Consensus       716 l~gHtdqIf~~AWSpdGr---------~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk  786 (1012)
T KOG1445|consen  716 LVGHTDQIFGIAWSPDGR---------RIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDK  786 (1012)
T ss_pred             eccCcCceeEEEECCCCc---------ceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccc
Confidence            999999999999999997         699999999999999987653 4332221 12234678999999999888774


Q ss_pred             ----cEEEEeCCCCe--EEEE--EecCCCEEEEEEccCCCE-EEEEEcCCcEEEEEe
Q 008467          515 ----SMHIWSLKEGK--IVKT--YTGNGGIFEVCWNKEGDK-IAACFANHTVCVLDF  562 (564)
Q Consensus       515 ----~i~iw~~~~~~--~~~~--~~~~~~i~~~~w~~~g~~-la~~~~~~~v~v~~~  562 (564)
                          .|.+|+.++-.  .+.+  ++....+.--.+++|.+. +.+|-+|..|..|.+
T Consensus       787 ~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv  843 (1012)
T KOG1445|consen  787 SSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEV  843 (1012)
T ss_pred             cchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEe
Confidence                68899987533  2222  222223333456777764 456666777777754

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.68  E-value=5.7e-14  Score=138.95  Aligned_cols=305  Identities=16%  Similarity=0.179  Sum_probs=189.8

Q ss_pred             EEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCe-EEEEECCCCCEEEEEeCCCeEEEEECC-Ccee
Q 008467          232 ASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDV-TTLDWNGEGTLLATGSYDGQARIWSTN-GDLK  309 (564)
Q Consensus       232 asgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V-~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~  309 (564)
                      ++-..++.+.+.|..+.+..             .....     ...+ ..+.++|||+++.+++.||.|.++|+. .+..
T Consensus        10 V~~~~~~~v~viD~~t~~~~-------------~~i~~-----~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v   71 (369)
T PF02239_consen   10 VVERGSGSVAVIDGATNKVV-------------ARIPT-----GGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVV   71 (369)
T ss_dssp             EEEGGGTEEEEEETTT-SEE-------------EEEE------STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEE
T ss_pred             EEecCCCEEEEEECCCCeEE-------------EEEcC-----CCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEE
Confidence            45567899999997664321             11111     1223 346799999999999999999999986 4455


Q ss_pred             EeecCCCCCEEEEEeCCCCCEEEEee-CCCcEEEEECCCcceeEEEeeccc-------CeEEE-EcCCCceEEEEeC-CC
Q 008467          310 CTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDVKTEEWKQQFEFHSG-------PTLDV-DWRNNVSFATSST-DN  379 (564)
Q Consensus       310 ~~~~~h~~~V~~l~~~~~~~~l~s~s-~D~~v~iwd~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~~~~-d~  379 (564)
                      .++..-. ...+++++++|++++++. .++++.++|.++.+.++.+.....       .+..+ .-.....|+..-. .+
T Consensus        72 ~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~  150 (369)
T PF02239_consen   72 ATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTG  150 (369)
T ss_dssp             EEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTT
T ss_pred             EEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCC
Confidence            5555433 457899999999988665 689999999999998887654321       22333 2334455665555 47


Q ss_pred             eEEEEEcCCCceee-EecCCCcceEEEEECCCCCEEEEE-eCCCcEEEEeCCCCeeeeecc----cccccEEEE------
Q 008467          380 MIYVCKIGENRPIK-TFAGHQGEVNCVKWDPTGSLLASC-SDDVTAKIWNMKQDKYVHDLR----EHSKEIYTI------  447 (564)
Q Consensus       380 ~i~~~~~~~~~~~~-~~~~h~~~i~~v~~~~~~~~las~-s~dg~i~iwd~~~~~~~~~~~----~~~~~i~~i------  447 (564)
                      .|.+.+....+++. .............|+|++++++.+ ..+..|-++|.++++.+..+.    .|..+...+      
T Consensus       151 ~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g  230 (369)
T PF02239_consen  151 EIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFG  230 (369)
T ss_dssp             EEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTE
T ss_pred             eEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcc
Confidence            88888876655433 222223345678999999987654 457789999999988765442    233333322      


Q ss_pred             -EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEE----eCCCcEEEEeCC
Q 008467          448 -RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASG----SLDKSMHIWSLK  522 (564)
Q Consensus       448 -~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasg----s~dg~i~iw~~~  522 (564)
                       -|...+..      . ..++.-..+.+.+||..+.+.+.++.....+ .-+.-+|+++++.+.    ...++|.++|.+
T Consensus       231 ~vw~~~~~~------~-~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~  302 (369)
T PF02239_consen  231 PVWATSGLG------Y-FAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKK  302 (369)
T ss_dssp             EEEEEEBSS------S-SEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECC
T ss_pred             eEEeecccc------c-eecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECc
Confidence             13222111      1 1212222346778999999999999877777 788889999999887    445899999999


Q ss_pred             CCeEEEEEecCCC--EEEEEEccCCCEEEEEEc--CCcEEEEEee
Q 008467          523 EGKIVKTYTGNGG--IFEVCWNKEGDKIAACFA--NHTVCVLDFR  563 (564)
Q Consensus       523 ~~~~~~~~~~~~~--i~~~~w~~~g~~la~~~~--~~~v~v~~~~  563 (564)
                      +.+.+.++....+  +..+.|++||+.+-++..  ++.|.|||-+
T Consensus       303 tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~  347 (369)
T PF02239_consen  303 TLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAK  347 (369)
T ss_dssp             GTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETT
T ss_pred             CcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECC
Confidence            9988888765444  999999999996665544  3469999853

...

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=1e-14  Score=136.68  Aligned_cols=195  Identities=23%  Similarity=0.294  Sum_probs=143.8

Q ss_pred             EEEEcCC-CceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccc
Q 008467          362 LDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH  440 (564)
Q Consensus       362 ~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~  440 (564)
                      ..+++.. +..+++++.||++++|+.....++.....|.++|.++.|+|||++|++-+.| ..+||+..++..+......
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            3445544 4778999999999999998888888888999999999999999999999999 9999999998666544321


Q ss_pred             --cccEEEEEEccCCCCCCCCCCcEEEE-EEeCCCeEEEEeCCCCeE-----EEEEeCCCCCEEEEEEcCCCCEEEEEeC
Q 008467          441 --SKEIYTIRWSPTGSGTNNPNQQLILA-SASFDSTVKLWDVELGKL-----LYSLNGHREPVYSLAFSPTGEYLASGSL  512 (564)
Q Consensus       441 --~~~i~~i~~~p~~~~~~~~~~~~~l~-s~s~dg~i~iwd~~~~~~-----~~~~~~h~~~i~~~~~spdg~~lasgs~  512 (564)
                        .-....++|+.++..     ..++++ ....-+.|+.|++...+-     ......-...|.+++.|+||+++|.|+.
T Consensus       227 ~k~~~~~~cRF~~d~~~-----~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~  301 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQ-----ETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTM  301 (398)
T ss_pred             ccchhhhhceecccCCC-----ceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEecc
Confidence              223445666655432     112333 333445666666542111     1111122347999999999999999999


Q ss_pred             CCcEEEEeCCCCeEEEEEec--CCCEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467          513 DKSMHIWSLKEGKIVKTYTG--NGGIFEVCWNKEGDKIAACFANHTVCVLDF  562 (564)
Q Consensus       513 dg~i~iw~~~~~~~~~~~~~--~~~i~~~~w~~~g~~la~~~~~~~v~v~~~  562 (564)
                      ||.|.|+++.+-+.++-.+.  .+-|+++.|+||.+.++.-+.+.+.+|..+
T Consensus       302 dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l  353 (398)
T KOG0771|consen  302 DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKL  353 (398)
T ss_pred             CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence            99999999998777666543  335899999999999998888888888755

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.67  E-value=3.6e-14  Score=128.27  Aligned_cols=233  Identities=15%  Similarity=0.255  Sum_probs=162.5

Q ss_pred             CEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeeccc--CeEEEEcCCCceEEEEeCC------CeEEEEEcCCC
Q 008467          318 PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG--PTLDVDWRNNVSFATSSTD------NMIYVCKIGEN  389 (564)
Q Consensus       318 ~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d------~~i~~~~~~~~  389 (564)
                      ...+++|+.|...++.|.. .-.+||+.+.-+....-+.+.+  .+..+-++.+.....++.+      +.+.+||--..
T Consensus         7 ~~lsvs~NQD~ScFava~~-~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~   85 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATD-TGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE   85 (346)
T ss_pred             ceeEEEEccCCceEEEEec-CceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence            4556999999888877654 4589998765322111112211  2233334555544555544      57899997777


Q ss_pred             ceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCC-CCeeeeeccccc--ccEEEEEEccCCCCCCCCCCcEEEE
Q 008467          390 RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK-QDKYVHDLREHS--KEIYTIRWSPTGSGTNNPNQQLILA  466 (564)
Q Consensus       390 ~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~-~~~~~~~~~~~~--~~i~~i~~~p~~~~~~~~~~~~~l~  466 (564)
                      +++.++. ...+|.++.+.++  .|+.. ..+.|.||... +-+.++.+....  ....++  .|...      ...+..
T Consensus        86 ~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~--~~~~~------k~~Laf  153 (346)
T KOG2111|consen   86 RCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSL--CPTSN------KSLLAF  153 (346)
T ss_pred             cEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEee--cCCCC------ceEEEc
Confidence            8887765 4678999999875  34333 45689999876 334444332211  112222  22211      122333


Q ss_pred             EEeCCCeEEEEeCCCCeE--EEEEeCCCCCEEEEEEcCCCCEEEEEeCCCc-EEEEeCCCCeEEEEEec---CCCEEEEE
Q 008467          467 SASFDSTVKLWDVELGKL--LYSLNGHREPVYSLAFSPTGEYLASGSLDKS-MHIWSLKEGKIVKTYTG---NGGIFEVC  540 (564)
Q Consensus       467 s~s~dg~i~iwd~~~~~~--~~~~~~h~~~i~~~~~spdg~~lasgs~dg~-i~iw~~~~~~~~~~~~~---~~~i~~~~  540 (564)
                      -|-.-|.|+|-|+...+.  ...+.+|...|.+++.+-+|..+||+|..|+ |+|||..+|+++..+.-   ...|++++
T Consensus       154 Pg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~ia  233 (346)
T KOG2111|consen  154 PGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIA  233 (346)
T ss_pred             CCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEE
Confidence            355679999999986554  4678899999999999999999999999985 89999999999998864   45699999


Q ss_pred             EccCCCEEEEEEcCCcEEEEEee
Q 008467          541 WNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       541 w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      |||++.+||+++..|+++||.+|
T Consensus       234 FSp~~s~LavsSdKgTlHiF~l~  256 (346)
T KOG2111|consen  234 FSPNSSWLAVSSDKGTLHIFSLR  256 (346)
T ss_pred             eCCCccEEEEEcCCCeEEEEEee
Confidence            99999999999999999999886

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.67  E-value=6e-13  Score=120.50  Aligned_cols=235  Identities=23%  Similarity=0.346  Sum_probs=160.2

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEECCCcee-EeecCCCCCEEEEEeCCCCCEE-EEeeCC------CcEEEEECCCc
Q 008467          277 DVTTLDWNGEGTLLATGSYDGQARIWSTNGDLK-CTLSKHKGPIFSLKWNKKGDYL-LTGSCD------KTAIVWDVKTE  348 (564)
Q Consensus       277 ~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~-~~~~~h~~~V~~l~~~~~~~~l-~s~s~D------~~v~iwd~~~~  348 (564)
                      ...+++|+.|...+++|..+| .|||+.+.-.. .....+.+.+.-+...-..++| +.|+..      +.|.|||-...
T Consensus         7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~   85 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE   85 (346)
T ss_pred             ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence            356699999999998887765 68898764111 1111222221111111123344 344443      47999996555


Q ss_pred             ceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcC-CCceeeEecCCC--cceEEEEECCCCCEEEE-EeCCCcEE
Q 008467          349 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIG-ENRPIKTFAGHQ--GEVNCVKWDPTGSLLAS-CSDDVTAK  424 (564)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~~~~~~~~h~--~~i~~v~~~~~~~~las-~s~dg~i~  424 (564)
                      .++..+.+. .++.++....+...+.  ..+.|++|... +.+.+..+..-.  ....+++-+.+..+||. |-.-|.|+
T Consensus        86 ~~i~el~f~-~~I~~V~l~r~riVvv--l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQ  162 (346)
T KOG2111|consen   86 RCIIELSFN-SEIKAVKLRRDRIVVV--LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQ  162 (346)
T ss_pred             cEEEEEEec-cceeeEEEcCCeEEEE--ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEE
Confidence            566555543 4677777766655443  56789999887 344444443222  12333333333344443 44578999


Q ss_pred             EEeCCCCee--eeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCe-EEEEeCCCCeEEEEEeCC--CCCEEEEE
Q 008467          425 IWNMKQDKY--VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDST-VKLWDVELGKLLYSLNGH--REPVYSLA  499 (564)
Q Consensus       425 iwd~~~~~~--~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~h--~~~i~~~~  499 (564)
                      |-|+...+.  ...+.+|...|.+++..-+|.         ++||+|..|+ |||||..+|..+.+++..  ...|++|+
T Consensus       163 i~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt---------~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~ia  233 (346)
T KOG2111|consen  163 IVDLASTKPNAPSIINAHDSDIACVALNLQGT---------LVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIA  233 (346)
T ss_pred             EEEhhhcCcCCceEEEcccCceeEEEEcCCcc---------EEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEE
Confidence            999876655  467889999999999998886         8999999998 799999999999998632  35799999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCC
Q 008467          500 FSPTGEYLASGSLDKSMHIWSLKEG  524 (564)
Q Consensus       500 ~spdg~~lasgs~dg~i~iw~~~~~  524 (564)
                      |||++.+||++|..|+|+||.++..
T Consensus       234 FSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  234 FSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             eCCCccEEEEEcCCCeEEEEEeecC
Confidence            9999999999999999999998763

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=4.3e-14  Score=130.72  Aligned_cols=279  Identities=17%  Similarity=0.290  Sum_probs=193.4

Q ss_pred             ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCc-------eeEe-ecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEE
Q 008467          272 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD-------LKCT-LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVW  343 (564)
Q Consensus       272 ~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~-------~~~~-~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iw  343 (564)
                      .+|.+.|.++.||.++++|++|+.|..+++|.++.-       .+.. -..|...|+||+|+..+..+++|..+++|.+.
T Consensus        53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~H  132 (609)
T KOG4227|consen   53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKH  132 (609)
T ss_pred             hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEee
Confidence            356788999999999999999999999999987532       1111 23467899999999999999999999999999


Q ss_pred             ECCCcceeEEEeec--ccCeEEEEcC-CCceEEEEeCCCeEEEEEcCCCc-eeeEe--cCCCcceEEEEECCCC-CEEEE
Q 008467          344 DVKTEEWKQQFEFH--SGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENR-PIKTF--AGHQGEVNCVKWDPTG-SLLAS  416 (564)
Q Consensus       344 d~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~-~~~~~--~~h~~~i~~v~~~~~~-~~las  416 (564)
                      |+.+.+.+-.+...  .+.++.++-. .+..|++.+.++.|.+|+..... ++..+  .........+.|+|.. .+|++
T Consensus       133 DiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~  212 (609)
T KOG4227|consen  133 DIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILV  212 (609)
T ss_pred             ecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEe
Confidence            99998776655433  2466666543 36788999999999999998755 33322  2223456678899965 56888


Q ss_pred             EeCCCcEEEEeCCCCee-ee------ecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE-EEEE
Q 008467          417 CSDDVTAKIWNMKQDKY-VH------DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-LYSL  488 (564)
Q Consensus       417 ~s~dg~i~iwd~~~~~~-~~------~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~  488 (564)
                      .+..+-+-+||.+.... +.      .+......-.++.|+|.|..         |.+--.-..-.+||+-+.++ +..+
T Consensus       213 ~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q---------~msiRR~~~P~~~D~~S~R~~V~k~  283 (609)
T KOG4227|consen  213 NSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQ---------FMSIRRGKCPLYFDFISQRCFVLKS  283 (609)
T ss_pred             ccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCe---------ehhhhccCCCEEeeeecccceeEec
Confidence            99999999999875432 11      11111222367889998752         22222222334566655333 2232


Q ss_pred             eCCC-------CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----e-------------------EEEEEecCCC-EE
Q 008467          489 NGHR-------EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG----K-------------------IVKTYTGNGG-IF  537 (564)
Q Consensus       489 ~~h~-------~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~----~-------------------~~~~~~~~~~-i~  537 (564)
                      . |.       ..|.+++|--|- -+++|+.+=.|+||.+...    .                   .+..+.++-. +.
T Consensus       284 D-~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~N  361 (609)
T KOG4227|consen  284 D-HNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPN  361 (609)
T ss_pred             c-CCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccccccc
Confidence            2 22       236677886554 4999999999999997531    1                   1122344433 46


Q ss_pred             EEEEccCCCEEEEEEcCCcEEEEE
Q 008467          538 EVCWNKEGDKIAACFANHTVCVLD  561 (564)
Q Consensus       538 ~~~w~~~g~~la~~~~~~~v~v~~  561 (564)
                      -+.|+|...+|++.+....+.+|.
T Consensus       362 QVRF~~H~~~l~SSGVE~~~KlWS  385 (609)
T KOG4227|consen  362 QVRFSQHNNLLVSSGVENSFKLWS  385 (609)
T ss_pred             ceeecCCcceEeccchhhheeccc
Confidence            799999999999888888888883

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=1.5e-13  Score=140.98  Aligned_cols=213  Identities=13%  Similarity=0.141  Sum_probs=146.4

Q ss_pred             CeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeC---CCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEE
Q 008467          297 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC---DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA  373 (564)
Q Consensus       297 g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~---D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (564)
                      ..|.+||.++.....+..|..++.+.+|+|+|+.|+..+.   +..|.+||+.++...                      
T Consensus       182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~----------------------  239 (435)
T PRK05137        182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE----------------------  239 (435)
T ss_pred             eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE----------------------
Confidence            3788888888777778888899999999999999887653   357888888765421                      


Q ss_pred             EEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEE-EEeCCCc--EEEEeCCCCeeeeecccccccEEEEEEc
Q 008467          374 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVT--AKIWNMKQDKYVHDLREHSKEIYTIRWS  450 (564)
Q Consensus       374 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~la-s~s~dg~--i~iwd~~~~~~~~~~~~~~~~i~~i~~~  450 (564)
                                          .+..+.+.+.+.+|+|||+.|+ +.+.++.  |.+||+.++.. ..+..+........|+
T Consensus       240 --------------------~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~s  298 (435)
T PRK05137        240 --------------------LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYS  298 (435)
T ss_pred             --------------------EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEc
Confidence                                1122334556789999998765 5666665  66678877654 4455566566778999


Q ss_pred             cCCCCCCCCCCcEEEEEEeCCC--eEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCe
Q 008467          451 PTGSGTNNPNQQLILASASFDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD---KSMHIWSLKEGK  525 (564)
Q Consensus       451 p~~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~d---g~i~iw~~~~~~  525 (564)
                      |+|.        .++.+...+|  .|.+||+..++. ..+..+...+...+|||||++|+..+.+   ..|.+|++.++.
T Consensus       299 pDG~--------~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~  369 (435)
T PRK05137        299 PDGS--------QIVFESDRSGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG  369 (435)
T ss_pred             CCCC--------EEEEEECCCCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence            9875        2333333333  688888876543 3444344556778999999999877653   368888986554


Q ss_pred             EEEEEecCCCEEEEEEccCCCEEEEEEcCC------cEEEEEe
Q 008467          526 IVKTYTGNGGIFEVCWNKEGDKIAACFANH------TVCVLDF  562 (564)
Q Consensus       526 ~~~~~~~~~~i~~~~w~~~g~~la~~~~~~------~v~v~~~  562 (564)
                      . ..+.....+..++|+|||+.|+....++      .+.++|+
T Consensus       370 ~-~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl  411 (435)
T PRK05137        370 E-RILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL  411 (435)
T ss_pred             e-EeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence            3 3443333567889999999998765432      4566664

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.64  E-value=3.3e-14  Score=127.87  Aligned_cols=149  Identities=21%  Similarity=0.514  Sum_probs=110.4

Q ss_pred             EEEECCCCCEEEEEeC----------CCcEEEEeCCCC-eeeeeccc-ccccEEEEEEccCCCCCCCCCCcEEEEEEeCC
Q 008467          404 CVKWDPTGSLLASCSD----------DVTAKIWNMKQD-KYVHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASASFD  471 (564)
Q Consensus       404 ~v~~~~~~~~las~s~----------dg~i~iwd~~~~-~~~~~~~~-~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d  471 (564)
                      .+.|+|+|..|+.-..          -+...||.++.. ..+..+.- ..++|.+++|+|++.       ...+++|..+
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~-------~favi~g~~~   82 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGN-------EFAVIYGSMP   82 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCC-------EEEEEEccCC
Confidence            5789999987654332          123556655322 23333332 345799999999875       2345667788


Q ss_pred             CeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEE
Q 008467          472 STVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD---KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKI  548 (564)
Q Consensus       472 g~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~d---g~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~l  548 (564)
                      +.|.+||++ ++.+..+.  ..+++.|.|||+|++||+|+.+   |.|.+||+++.+.+..+... .+..++|+|||++|
T Consensus        83 ~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~  158 (194)
T PF08662_consen   83 AKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYL  158 (194)
T ss_pred             cccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEE
Confidence            899999997 77777764  4578999999999999998754   67999999999988887644 57899999999999


Q ss_pred             EEEEc------CCcEEEEEee
Q 008467          549 AACFA------NHTVCVLDFR  563 (564)
Q Consensus       549 a~~~~------~~~v~v~~~~  563 (564)
                      +++..      |..+.||++.
T Consensus       159 ~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  159 ATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             EEEEeccceeccccEEEEEec
Confidence            98864      5667888863

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.64  E-value=7.4e-15  Score=141.19  Aligned_cols=220  Identities=21%  Similarity=0.369  Sum_probs=158.0

Q ss_pred             CCCCCEEEEEeCCCeEEEEECCCceeEe-e----cCCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCcceeEEEeec
Q 008467          284 NGEGTLLATGSYDGQARIWSTNGDLKCT-L----SKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFH  357 (564)
Q Consensus       284 s~~g~~l~sg~~dg~i~vw~~~~~~~~~-~----~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~  357 (564)
                      .+.+--++.|-..|.+.+.+........ +    .-.+..|++++|-|.+ ..|+.+-.+|.+.++|.....      ..
T Consensus       182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~------~~  255 (636)
T KOG2394|consen  182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC------GA  255 (636)
T ss_pred             CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc------cC
Confidence            3566778888888999888754321111 1    1134789999999866 457778889999999862110      00


Q ss_pred             ccCeEEEEcCCCceEEEEeCCCeEEEEEcC-CCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeee
Q 008467          358 SGPTLDVDWRNNVSFATSSTDNMIYVCKIG-ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD  436 (564)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~  436 (564)
                      ..+.. ........|.       |..|.-. ...|+..+.--++.|+..+|+|||++||+.|.||.+||||..+.+.+..
T Consensus       256 t~p~~-~~~k~~~~f~-------i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~  327 (636)
T KOG2394|consen  256 TAPSY-QALKDGDQFA-------ILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGV  327 (636)
T ss_pred             CCCcc-cccCCCCeeE-------EeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHH
Confidence            00000 0001111221       1122111 1245544444556899999999999999999999999999999888877


Q ss_pred             cccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcC--------------
Q 008467          437 LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSP--------------  502 (564)
Q Consensus       437 ~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp--------------  502 (564)
                      ++..-+...|++|+|+|.         +|++|+.|.-|.||.+..++++..-.+|...|..|+|.|              
T Consensus       328 mkSYFGGLLCvcWSPDGK---------yIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~  398 (636)
T KOG2394|consen  328 MKSYFGGLLCVCWSPDGK---------YIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGM  398 (636)
T ss_pred             HHhhccceEEEEEcCCcc---------EEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccc
Confidence            777778899999999997         899999999999999999999999999999999999983              


Q ss_pred             -----------------C----C-------------CEEEEEeCCCcEEEEeCCCCeE
Q 008467          503 -----------------T----G-------------EYLASGSLDKSMHIWSLKEGKI  526 (564)
Q Consensus       503 -----------------d----g-------------~~lasgs~dg~i~iw~~~~~~~  526 (564)
                                       +    +             ..+.+.+.|-.+.+||+..-.+
T Consensus       399 ~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L  456 (636)
T KOG2394|consen  399 DSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVL  456 (636)
T ss_pred             cccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhc
Confidence                             1    1             2467888999999999865443

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=1.3e-14  Score=132.24  Aligned_cols=185  Identities=21%  Similarity=0.392  Sum_probs=142.0

Q ss_pred             ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECC--CCCEEEEEeCCCcEEEEeCCCCeeee--eccccc-ccE
Q 008467          370 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP--TGSLLASCSDDVTAKIWNMKQDKYVH--DLREHS-KEI  444 (564)
Q Consensus       370 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~--~~~~las~s~dg~i~iwd~~~~~~~~--~~~~~~-~~i  444 (564)
                      ..++++-..|.|++|+..+++.+..|+++...++.++|..  ....+.+|+.||+||+||++......  .+.+++ .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            3467777889999999999999999999999999999976  45678999999999999998765433  333444 334


Q ss_pred             EEEEEccCCCCCCCCCCcEEEEEEe----CCCeEEEEeCCCCeE-EEEE-eCCCCCEEEEEEcCCC-CEEEEEeCCCcEE
Q 008467          445 YTIRWSPTGSGTNNPNQQLILASAS----FDSTVKLWDVELGKL-LYSL-NGHREPVYSLAFSPTG-EYLASGSLDKSMH  517 (564)
Q Consensus       445 ~~i~~~p~~~~~~~~~~~~~l~s~s----~dg~i~iwd~~~~~~-~~~~-~~h~~~i~~~~~spdg-~~lasgs~dg~i~  517 (564)
                      .+++-...+         .+++.|.    .|-.|.+||++..+. +..+ ..|...|+++.|+|.. .+|++||.||.|.
T Consensus       121 ~~ld~nck~---------~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvn  191 (376)
T KOG1188|consen  121 ICLDLNCKK---------NIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVN  191 (376)
T ss_pred             eEeeccCcC---------CeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEE
Confidence            444432221         2566554    366799999998766 4444 5699999999999975 7899999999999


Q ss_pred             EEeCCCC----eEEEEEecCCCEEEEEEccCC-CEEEEEEcCCcEEEEEee
Q 008467          518 IWSLKEG----KIVKTYTGNGGIFEVCWNKEG-DKIAACFANHTVCVLDFR  563 (564)
Q Consensus       518 iw~~~~~----~~~~~~~~~~~i~~~~w~~~g-~~la~~~~~~~v~v~~~~  563 (564)
                      +||++.-    .++.++.....|-.+.|..++ ++|..-+..++.++|++.
T Consensus       192 lfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele  242 (376)
T KOG1188|consen  192 LFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELE  242 (376)
T ss_pred             eeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEcc
Confidence            9999753    255566666679999999988 566666778899999874

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.63  E-value=1.6e-13  Score=143.95  Aligned_cols=264  Identities=19%  Similarity=0.284  Sum_probs=173.1

Q ss_pred             CCceeEccCCccceEEEEECCC-CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEEC
Q 008467          206 NSDVTILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN  284 (564)
Q Consensus       206 ~~~~~~l~~h~~~V~~~~~sp~-~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s  284 (564)
                      ..-++.|..|...|..++.++. +.+++|||.||+||+|++..-....    +.......      .......+.++...
T Consensus      1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~----~s~rS~lt------ys~~~sr~~~vt~~ 1107 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG----GSARSELT------YSPEGSRVEKVTMC 1107 (1431)
T ss_pred             ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc----ceeeeeEE------EeccCCceEEEEec
Confidence            3446778889999998888876 5999999999999999986422111    00011111      11235678899999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCc--ee------EeecCC-CCCEEEEE-eCC-CC-CEEEEeeCCCcEEEEECCCcceeE
Q 008467          285 GEGTLLATGSYDGQARIWSTNGD--LK------CTLSKH-KGPIFSLK-WNK-KG-DYLLTGSCDKTAIVWDVKTEEWKQ  352 (564)
Q Consensus       285 ~~g~~l~sg~~dg~i~vw~~~~~--~~------~~~~~h-~~~V~~l~-~~~-~~-~~l~s~s~D~~v~iwd~~~~~~~~  352 (564)
                      +.|+.+|.|+.||.|++.+.+..  ..      .....+ .+.+.++. |.. .+ ..++.+..-+.+..||+++.....
T Consensus      1108 ~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w 1187 (1431)
T KOG1240|consen 1108 GNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAW 1187 (1431)
T ss_pred             cCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHH
Confidence            99999999999999999987641  10      111112 23344432 221 12 245566666777778776543111


Q ss_pred             EEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCe
Q 008467          353 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK  432 (564)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~  432 (564)
                                                      .+       .+.-..|.|++++.+|-+..+++|+..|.+.+||++-+.
T Consensus      1188 --------------------------------~l-------k~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~ 1228 (1431)
T KOG1240|consen 1188 --------------------------------RL-------KNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRV 1228 (1431)
T ss_pred             --------------------------------hh-------hcCccccceeEEEecCCceEEEEecCCceEEEEEeecCc
Confidence                                            11       112235679999999999999999999999999999887


Q ss_pred             eeeecc-cccccEEEEEEccCCCCCCCCCCcEEEEEEe-CCCeEEEEeCCCCeEEEEEeCC-C-------CC--------
Q 008467          433 YVHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASAS-FDSTVKLWDVELGKLLYSLNGH-R-------EP--------  494 (564)
Q Consensus       433 ~~~~~~-~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~h-~-------~~--------  494 (564)
                      ++.... .+..+|..+...|...     .....+.+++ ..+.|.+|++.+|.+.+.+-.. .       .|        
T Consensus      1229 ~i~sw~~P~~~~i~~v~~~~~~~-----~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~ 1303 (1431)
T KOG1240|consen 1229 PILSWEHPARAPIRHVWLCPTYP-----QESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPD 1303 (1431)
T ss_pred             eeecccCcccCCcceEEeeccCC-----CCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCC
Confidence            776553 3456777777776543     1123444455 6889999999998766655322 1       11        


Q ss_pred             ---EEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 008467          495 ---VYSLAFSPTGEYLASGSLDKSMHIWSLKE  523 (564)
Q Consensus       495 ---i~~~~~spdg~~lasgs~dg~i~iw~~~~  523 (564)
                         .....+..-+.++.+|+.|+.|+.||...
T Consensus      1304 ~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1304 SLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred             cccceeeecccCCceeeecCCccceeeccCCC
Confidence               11223333456888999999999999764

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=1.1e-13  Score=141.73  Aligned_cols=213  Identities=17%  Similarity=0.185  Sum_probs=143.4

Q ss_pred             CeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCC---CcEEEEECCCcceeEEEeecccCeEEEEcCCCceEE
Q 008467          297 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD---KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA  373 (564)
Q Consensus       297 g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (564)
                      ..|.+||..+.....+..+...+.+.+|+|+|+.|+..+.+   ..|.+||+.+++...                     
T Consensus       184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~---------------------  242 (433)
T PRK04922        184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL---------------------  242 (433)
T ss_pred             EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE---------------------
Confidence            36889998877666677788899999999999999887643   358888876654211                     


Q ss_pred             EEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEE-EEeCCC--cEEEEeCCCCeeeeecccccccEEEEEEc
Q 008467          374 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDV--TAKIWNMKQDKYVHDLREHSKEIYTIRWS  450 (564)
Q Consensus       374 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~la-s~s~dg--~i~iwd~~~~~~~~~~~~~~~~i~~i~~~  450 (564)
                                           +..+.+...+++|+|||+.|+ +.+.+|  .|.+||+.++.. ..+..+........|+
T Consensus       243 ---------------------l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~s  300 (433)
T PRK04922        243 ---------------------VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWA  300 (433)
T ss_pred             ---------------------eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEEC
Confidence                                 111222334688999998765 555565  589999987764 3455555555678999


Q ss_pred             cCCCCCCCCCCcEEEEEEeCCCe--EEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCe
Q 008467          451 PTGSGTNNPNQQLILASASFDST--VKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK---SMHIWSLKEGK  525 (564)
Q Consensus       451 p~~~~~~~~~~~~~l~s~s~dg~--i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg---~i~iw~~~~~~  525 (564)
                      |++.        .++++...+|.  |.++|+..++.. .+..+......++|||||++|+..+.++   .|.+|++.+++
T Consensus       301 pDG~--------~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~  371 (433)
T PRK04922        301 PDGK--------SIYFTSDRGGRPQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS  371 (433)
T ss_pred             CCCC--------EEEEEECCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCC
Confidence            9875        23334434554  666677666532 2322333445789999999998765443   69999998887


Q ss_pred             EEEEEecCCCEEEEEEccCCCEEEEEEcC-C--cEEEEEe
Q 008467          526 IVKTYTGNGGIFEVCWNKEGDKIAACFAN-H--TVCVLDF  562 (564)
Q Consensus       526 ~~~~~~~~~~i~~~~w~~~g~~la~~~~~-~--~v~v~~~  562 (564)
                      .. .+........++|+|||+.|+....+ +  .+.+++.
T Consensus       372 ~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~  410 (433)
T PRK04922        372 VR-TLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVST  410 (433)
T ss_pred             eE-ECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence            65 33333344568999999998877653 2  3555554

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=3e-15  Score=144.04  Aligned_cols=208  Identities=24%  Similarity=0.388  Sum_probs=153.8

Q ss_pred             eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcC
Q 008467          308 LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIG  387 (564)
Q Consensus       308 ~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~  387 (564)
                      +...+.+|++-|.+|.|+.+|.+|++||.|-.+.|||.-..+.+..                                  
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllhs----------------------------------   87 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHS----------------------------------   87 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeee----------------------------------
Confidence            3456889999999999999999999999999999999864433221                                  


Q ss_pred             CCceeeEecCCCcceEEEEECCC--CCEEEEEeCCCcEEEEeCCCC----------eeeeecccccccEEEEEEccCCCC
Q 008467          388 ENRPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKIWNMKQD----------KYVHDLREHSKEIYTIRWSPTGSG  455 (564)
Q Consensus       388 ~~~~~~~~~~h~~~i~~v~~~~~--~~~las~s~dg~i~iwd~~~~----------~~~~~~~~~~~~i~~i~~~p~~~~  455 (564)
                            .-.||..-|-|+.|-|.  .++++||..|..|+++|+...          ...+.+.-|...|..|+-.|.+. 
T Consensus        88 ------I~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P-  160 (758)
T KOG1310|consen   88 ------ISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP-  160 (758)
T ss_pred             ------eecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCC-
Confidence                  12478889999999884  568999999999999998742          22344455777777787777654 


Q ss_pred             CCCCCCcEEEEEEeCCCeEEEEeCCCCe-EEE---------EEeCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCC-
Q 008467          456 TNNPNQQLILASASFDSTVKLWDVELGK-LLY---------SLNGHREPVYSLAFSPTG-EYLASGSLDKSMHIWSLKE-  523 (564)
Q Consensus       456 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~---------~~~~h~~~i~~~~~spdg-~~lasgs~dg~i~iw~~~~-  523 (564)
                             ..+-+++.||+|+-+|++... +..         .+....-...++..||.. .+||.|+.|-..++||.+. 
T Consensus       161 -------htfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~  233 (758)
T KOG1310|consen  161 -------HTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRV  233 (758)
T ss_pred             -------ceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhh
Confidence                   368899999999999998521 111         111222346789999976 6789999999999999432 


Q ss_pred             -------Ce----------EEEEEecC-------------CCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          524 -------GK----------IVKTYTGN-------------GGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       524 -------~~----------~~~~~~~~-------------~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                             |+          ++.-|...             .+++-++|+|.|.-|.+..+...|.++|+.
T Consensus       234 lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn  303 (758)
T KOG1310|consen  234 LKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVN  303 (758)
T ss_pred             ccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeec
Confidence                   11          12222110             124678999999999999888899999873

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=9.5e-14  Score=141.80  Aligned_cols=206  Identities=20%  Similarity=0.224  Sum_probs=138.0

Q ss_pred             CeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCC---CcEEEEECCCcceeEEEeecccCeEEEEcCCCceEE
Q 008467          297 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD---KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA  373 (564)
Q Consensus       297 g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (564)
                      ..|.+||.+|.....+..+...+.+.+|+|+|+.|+..+.+   ..|.+||+.+++...                     
T Consensus       176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~---------------------  234 (427)
T PRK02889        176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV---------------------  234 (427)
T ss_pred             cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE---------------------
Confidence            46777788777666666788899999999999998876643   348888887664221                     


Q ss_pred             EEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEE-EEeCCCcEEEEeC--CCCeeeeecccccccEEEEEEc
Q 008467          374 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVTAKIWNM--KQDKYVHDLREHSKEIYTIRWS  450 (564)
Q Consensus       374 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~la-s~s~dg~i~iwd~--~~~~~~~~~~~~~~~i~~i~~~  450 (564)
                                           +....+.+.+.+|+|||+.|+ +.+.+|...||.+  .++. ...+..+........|+
T Consensus       235 ---------------------l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wS  292 (427)
T PRK02889        235 ---------------------VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFS  292 (427)
T ss_pred             ---------------------eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEc
Confidence                                 111122345789999998876 5677888777764  3333 44555555556678899


Q ss_pred             cCCCCCCCCCCcEEEEEEeCCCeEEEEeC--CCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCe
Q 008467          451 PTGSGTNNPNQQLILASASFDSTVKLWDV--ELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK---SMHIWSLKEGK  525 (564)
Q Consensus       451 p~~~~~~~~~~~~~l~s~s~dg~i~iwd~--~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg---~i~iw~~~~~~  525 (564)
                      |+|.        .+++++..+|...||.+  ..++. ..+..+.......+|||||++||..+.++   .|.+|++.+++
T Consensus       293 pDG~--------~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~  363 (427)
T PRK02889        293 PDGR--------SIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQ  363 (427)
T ss_pred             CCCC--------EEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCC
Confidence            9886        23444444566666654  44432 22222223345678999999999777654   69999998887


Q ss_pred             EEEEEecCCCEEEEEEccCCCEEEEEEcCC
Q 008467          526 IVKTYTGNGGIFEVCWNKEGDKIAACFANH  555 (564)
Q Consensus       526 ~~~~~~~~~~i~~~~w~~~g~~la~~~~~~  555 (564)
                      .... ........++|+|||+.|+++..++
T Consensus       364 ~~~l-t~~~~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        364 VTAL-TDTTRDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             eEEc-cCCCCccCceECCCCCEEEEEEecC
Confidence            5433 3333446789999999998886544

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=4.4e-13  Score=136.74  Aligned_cols=214  Identities=14%  Similarity=0.194  Sum_probs=139.5

Q ss_pred             CCeEEEEECCCCCEEEEEeC---CCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEe-eCCC--cEEEEECCCcc
Q 008467          276 KDVTTLDWNGEGTLLATGSY---DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTG-SCDK--TAIVWDVKTEE  349 (564)
Q Consensus       276 ~~V~~l~~s~~g~~l~sg~~---dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~D~--~v~iwd~~~~~  349 (564)
                      ..+.+.+|||||+.|+..+.   +..+.+|+..+.....+....+.+..+.|+|+|+.|+.. +.++  .|.+||+.++.
T Consensus       199 ~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~  278 (429)
T PRK03629        199 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ  278 (429)
T ss_pred             CceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence            46889999999999987653   357889997755444443344445678999999988754 4344  46677776553


Q ss_pred             eeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCC-CcEEEE--
Q 008467          350 WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD-VTAKIW--  426 (564)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~d-g~i~iw--  426 (564)
                      ..+                                          +..+...+....|+|||+.|+..+++ +...||  
T Consensus       279 ~~~------------------------------------------lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~  316 (429)
T PRK03629        279 IRQ------------------------------------------VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKV  316 (429)
T ss_pred             EEE------------------------------------------ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEE
Confidence            221                                          11222345678999999988777764 455555  


Q ss_pred             eCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC--CeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCC
Q 008467          427 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD--STVKLWDVELGKLLYSLNGHREPVYSLAFSPTG  504 (564)
Q Consensus       427 d~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d--g~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg  504 (564)
                      |+.++.. ..+..+........|+|+|.        .+++++..+  ..|.+||+.+++.. .+... ......+|||||
T Consensus       317 d~~~g~~-~~lt~~~~~~~~~~~SpDG~--------~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG  385 (429)
T PRK03629        317 NINGGAP-QRITWEGSQNQDADVSSDGK--------FMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNG  385 (429)
T ss_pred             ECCCCCe-EEeecCCCCccCEEECCCCC--------EEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCC
Confidence            5555543 33333444456788999875        233333333  45888999877643 34322 223567899999


Q ss_pred             CEEEEEeCCCc---EEEEeCCCCeEEEEEec-CCCEEEEEEcc
Q 008467          505 EYLASGSLDKS---MHIWSLKEGKIVKTYTG-NGGIFEVCWNK  543 (564)
Q Consensus       505 ~~lasgs~dg~---i~iw~~~~~~~~~~~~~-~~~i~~~~w~~  543 (564)
                      ++|+.++.++.   +.++++ +|.....+.. .+.+.+.+|+|
T Consensus       386 ~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        386 TMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             CEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence            99999888764   677777 4554555544 45688899997

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=5.8e-13  Score=135.91  Aligned_cols=207  Identities=13%  Similarity=0.159  Sum_probs=139.0

Q ss_pred             CeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeC---CCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEE
Q 008467          297 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC---DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA  373 (564)
Q Consensus       297 g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~---D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (564)
                      ..|.+||.+|.....+..+...+.+.+|+|+|+.|+..+.   +..+.+||+.+++...                     
T Consensus       179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~---------------------  237 (429)
T PRK03629        179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ---------------------  237 (429)
T ss_pred             eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE---------------------
Confidence            3788899887766666677789999999999999886542   3467777776654211                     


Q ss_pred             EEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEE-eCCC--cEEEEeCCCCeeeeecccccccEEEEEEc
Q 008467          374 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASC-SDDV--TAKIWNMKQDKYVHDLREHSKEIYTIRWS  450 (564)
Q Consensus       374 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~-s~dg--~i~iwd~~~~~~~~~~~~~~~~i~~i~~~  450 (564)
                                        +..+.++   +..++|+|||+.|+.. +.+|  .|.+||+.++... .+..+...+....|+
T Consensus       238 ------------------l~~~~~~---~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wS  295 (429)
T PRK03629        238 ------------------VASFPRH---NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWF  295 (429)
T ss_pred             ------------------ccCCCCC---cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEEC
Confidence                              1112222   3357899999988754 4455  4888999887654 344444567889999


Q ss_pred             cCCCCCCCCCCcEEEEEEeCCCe--EEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCe
Q 008467          451 PTGSGTNNPNQQLILASASFDST--VKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD---KSMHIWSLKEGK  525 (564)
Q Consensus       451 p~~~~~~~~~~~~~l~s~s~dg~--i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~d---g~i~iw~~~~~~  525 (564)
                      |+|.        .++++...++.  |.++|+..+.. ..+..+...+...+|||||++|+..+.+   ..|.+||+.+++
T Consensus       296 PDG~--------~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~  366 (429)
T PRK03629        296 PDSQ--------NLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG  366 (429)
T ss_pred             CCCC--------EEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence            9885        23333333444  44446665543 3444344456678999999999876543   358899998886


Q ss_pred             EEEEEecCCCEEEEEEccCCCEEEEEEcCCc
Q 008467          526 IVKTYTGNGGIFEVCWNKEGDKIAACFANHT  556 (564)
Q Consensus       526 ~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~  556 (564)
                      .. .+.........+|+|||++|++++.++.
T Consensus       367 ~~-~Lt~~~~~~~p~~SpDG~~i~~~s~~~~  396 (429)
T PRK03629        367 VQ-VLTDTFLDETPSIAPNGTMVIYSSSQGM  396 (429)
T ss_pred             eE-EeCCCCCCCCceECCCCCEEEEEEcCCC
Confidence            44 3333223456899999999999887764

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=5.2e-13  Score=137.08  Aligned_cols=215  Identities=13%  Similarity=0.136  Sum_probs=144.7

Q ss_pred             CCCeEEEEECCCCCEEEEEeC---CCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEE-EeeCCCc--EEEEECCCc
Q 008467          275 SKDVTTLDWNGEGTLLATGSY---DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKT--AIVWDVKTE  348 (564)
Q Consensus       275 ~~~V~~l~~s~~g~~l~sg~~---dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~--v~iwd~~~~  348 (564)
                      ...+.+.+|+|||+.|+..+.   +..|.+|+..+.....+..+.+.+.+.+|+|+|+.|+ +.+.++.  |.+||+.++
T Consensus       201 ~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~  280 (435)
T PRK05137        201 SSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSG  280 (435)
T ss_pred             CCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCC
Confidence            456899999999999988764   3689999987665566667778888999999999875 5555554  555566554


Q ss_pred             ceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC-CC--cEEE
Q 008467          349 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DV--TAKI  425 (564)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~-dg--~i~i  425 (564)
                      ..                                          ..+..+.+......|+|||+.|+..++ +|  .|.+
T Consensus       281 ~~------------------------------------------~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~  318 (435)
T PRK05137        281 TT------------------------------------------TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYV  318 (435)
T ss_pred             ce------------------------------------------EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEE
Confidence            32                                          122233344556899999998887764 33  5777


Q ss_pred             EeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC---CeEEEEeCCCCeEEEEEeCCCCCEEEEEEcC
Q 008467          426 WNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD---STVKLWDVELGKLLYSLNGHREPVYSLAFSP  502 (564)
Q Consensus       426 wd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp  502 (564)
                      ||+.++.. ..+..+...+....|+|+|.         .|+..+.+   ..|.+||+..+.. ..+. ....+...+|+|
T Consensus       319 ~d~~g~~~-~~lt~~~~~~~~~~~SpdG~---------~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~sp  386 (435)
T PRK05137        319 MNADGSNP-RRISFGGGRYSTPVWSPRGD---------LIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAP  386 (435)
T ss_pred             EECCCCCe-EEeecCCCcccCeEECCCCC---------EEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECC
Confidence            78766543 33433445566788999885         34443332   3688889865443 3333 223467889999


Q ss_pred             CCCEEEEEeCC------CcEEEEeCCCCeEEEEEecCCCEEEEEEccC
Q 008467          503 TGEYLASGSLD------KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKE  544 (564)
Q Consensus       503 dg~~lasgs~d------g~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~  544 (564)
                      ||++|+..+.+      ..|.++++..+.. ..+...+.+...+|+|-
T Consensus       387 DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~~~~~p~Wsp~  433 (435)
T PRK05137        387 NGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPGDASDPAWSPL  433 (435)
T ss_pred             CCCEEEEEEccCCCCCcceEEEEECCCCce-EEccCCCCccCcccCCC
Confidence            99998765543      2588888876554 34444555778899873

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.61  E-value=5.5e-15  Score=139.65  Aligned_cols=270  Identities=17%  Similarity=0.227  Sum_probs=203.0

Q ss_pred             ceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCC
Q 008467          218 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDG  297 (564)
Q Consensus       218 ~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg  297 (564)
                      .-..+.++.+|++|+.|+.-|.+..+|+.++...           ....       -...|..+.|-.+.+++|++- ..
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~-----------~Ei~-------v~Etv~Dv~~LHneq~~AVAQ-K~  191 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLH-----------FEIN-------VMETVRDVTFLHNEQFFAVAQ-KK  191 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccceee-----------eeee-------hhhhhhhhhhhcchHHHHhhh-hc
Confidence            4466899999999999999999999998765321           0000       123477888888888888764 57


Q ss_pred             eEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCC-CceEEEEe
Q 008467          298 QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NVSFATSS  376 (564)
Q Consensus       298 ~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  376 (564)
                      .+.|||-.|.....+..| ..|..+.|.|..-.|++++..|.++.-|+.+|+.+..+....+.+..+.-.+ +..+-++.
T Consensus       192 y~yvYD~~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Gh  270 (545)
T KOG1272|consen  192 YVYVYDNNGTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGH  270 (545)
T ss_pred             eEEEecCCCcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcC
Confidence            899999998877777666 4688999999887888899999999999999999888877766655554433 34556788


Q ss_pred             CCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCC
Q 008467          377 TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGT  456 (564)
Q Consensus       377 ~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~  456 (564)
                      ..|+|.+|.-....|+..+..|.++|++|+++++|.++||.+.|..++|||++....++++.. ..+...+.+|..|   
T Consensus       271 snGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg---  346 (545)
T KOG1272|consen  271 SNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG---  346 (545)
T ss_pred             CCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc---
Confidence            999999999999899888899999999999999999999999999999999998776666554 2334556666554   


Q ss_pred             CCCCCcEEEEEEeCCCeEEEEeC-CCC--eEEEEEeCC--CCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 008467          457 NNPNQQLILASASFDSTVKLWDV-ELG--KLLYSLNGH--REPVYSLAFSPTGEYLASGSLDKSMHIW  519 (564)
Q Consensus       457 ~~~~~~~~l~s~s~dg~i~iwd~-~~~--~~~~~~~~h--~~~i~~~~~spdg~~lasgs~dg~i~iw  519 (564)
                             +| .+|.-..|.||.= -.+  ..-..+..|  ..+|..+.|.|-...|-.|-..|.-.|.
T Consensus       347 -------lL-A~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsil  406 (545)
T KOG1272|consen  347 -------LL-ALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSIL  406 (545)
T ss_pred             -------ce-eeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEe
Confidence                   34 4556678999952 221  111112223  3589999999988887777666644443

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=3.1e-13  Score=138.57  Aligned_cols=213  Identities=17%  Similarity=0.213  Sum_probs=140.1

Q ss_pred             CCeEEEEECCCCCEEEEEeCC---CeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEE-EeeCCC--cEEEEECCCcc
Q 008467          276 KDVTTLDWNGEGTLLATGSYD---GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDK--TAIVWDVKTEE  349 (564)
Q Consensus       276 ~~V~~l~~s~~g~~l~sg~~d---g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~--~v~iwd~~~~~  349 (564)
                      ..+.+..|+|||+.|+..+.+   ..|++|+..+.....+..+.+...+.+|+|+|+.|+ +.+.++  .|.+||+.++.
T Consensus       204 ~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~  283 (433)
T PRK04922        204 EPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ  283 (433)
T ss_pred             CccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC
Confidence            468889999999999988754   469999987655555555566666889999999875 445555  47777776554


Q ss_pred             eeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC-CCc--EEEE
Q 008467          350 WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVT--AKIW  426 (564)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~-dg~--i~iw  426 (564)
                      ..                                          .+..+......++|+|||+.|+.+++ +|.  |.++
T Consensus       284 ~~------------------------------------------~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~  321 (433)
T PRK04922        284 LT------------------------------------------RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRV  321 (433)
T ss_pred             eE------------------------------------------ECccCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence            21                                          12223333456789999998887764 455  5556


Q ss_pred             eCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEe-CCC--eEEEEeCCCCeEEEEEeCCCCCEEEEEEcCC
Q 008467          427 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASAS-FDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPT  503 (564)
Q Consensus       427 d~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s-~dg--~i~iwd~~~~~~~~~~~~h~~~i~~~~~spd  503 (564)
                      ++.++... .+..+........|+|+|.         .|+..+ .++  .|.+||+.+++.. .+. +.......+|+||
T Consensus       322 dl~~g~~~-~lt~~g~~~~~~~~SpDG~---------~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spd  389 (433)
T PRK04922        322 AASGGSAE-RLTFQGNYNARASVSPDGK---------KIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPN  389 (433)
T ss_pred             ECCCCCeE-EeecCCCCccCEEECCCCC---------EEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCC
Confidence            66655432 2222333445689999885         343333 222  6999999877654 343 2224456799999


Q ss_pred             CCEEEEEeCC---CcEEEEeCCCCeEEEEEe-cCCCEEEEEEcc
Q 008467          504 GEYLASGSLD---KSMHIWSLKEGKIVKTYT-GNGGIFEVCWNK  543 (564)
Q Consensus       504 g~~lasgs~d---g~i~iw~~~~~~~~~~~~-~~~~i~~~~w~~  543 (564)
                      |++|+..+.+   +.|.++++.. .....+. ..+.+..++|+|
T Consensus       390 G~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        390 GSMVLYATREGGRGVLAAVSTDG-RVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             CCEEEEEEecCCceEEEEEECCC-CceEEcccCCCCCCCCccCC
Confidence            9998876653   4688888854 3444443 345677889987

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=2.2e-13  Score=132.18  Aligned_cols=271  Identities=16%  Similarity=0.274  Sum_probs=190.1

Q ss_pred             CCCeEEEEECCCCCE-EEEEeCCCeEEEEECCCceeEeecCCC-CC-EEEEEeCCCCCEEEEeeCCCcEEEEECCCccee
Q 008467          275 SKDVTTLDWNGEGTL-LATGSYDGQARIWSTNGDLKCTLSKHK-GP-IFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK  351 (564)
Q Consensus       275 ~~~V~~l~~s~~g~~-l~sg~~dg~i~vw~~~~~~~~~~~~h~-~~-V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~  351 (564)
                      ...-+.+..+|||++ +++|.+--.|++||...-.+ .|..|. .. |.-.-.+.+-.-++.-..|++|-+..-......
T Consensus        51 p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL-KFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~  129 (703)
T KOG2321|consen   51 PTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL-KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYR  129 (703)
T ss_pred             ccccceeEecCCCcEEEEecccCCceEEEEccccee-eeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeee
Confidence            445678899999997 56788899999999865333 233443 22 333333333333444445666655432111100


Q ss_pred             EEEeecccCeEEEEcC-CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 008467          352 QQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ  430 (564)
Q Consensus       352 ~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~  430 (564)
                      ..+   .....++.+. ....+..++....||-+++..++-+..|....+.++++..++-..+|++|+.+|.|..||.+.
T Consensus       130 ~RI---P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~  206 (703)
T KOG2321|consen  130 TRI---PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD  206 (703)
T ss_pred             eec---CcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchh
Confidence            000   0012233332 234455566667789999999988888888889999999999999999999999999999987


Q ss_pred             Ceeeeecc------cccc-----cEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEe-CCCCCEEEE
Q 008467          431 DKYVHDLR------EHSK-----EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN-GHREPVYSL  498 (564)
Q Consensus       431 ~~~~~~~~------~~~~-----~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~i~~~  498 (564)
                      ...+..+.      .|.+     .|+++.|+.+|         +.++.|..+|.|.|||+++.+++..-. +...||..+
T Consensus       207 ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g---------L~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l  277 (703)
T KOG2321|consen  207 KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG---------LHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKL  277 (703)
T ss_pred             hhhheeeecccccCCCccccccCcceEEEecCCc---------eeEEeeccCCcEEEEEcccCCceeecccCCccceeee
Confidence            76554442      2333     38999998765         468999999999999999988776543 234689999


Q ss_pred             EEcCCC--CEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEE
Q 008467          499 AFSPTG--EYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCV  559 (564)
Q Consensus       499 ~~spdg--~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v  559 (564)
                      .|-+.+  ..+++.. ...++|||-.+|+..........+.++|+=|++-++.++-.++.+..
T Consensus       278 ~~~~~~~q~~v~S~D-k~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~  339 (703)
T KOG2321|consen  278 DWQDTDQQNKVVSMD-KRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHT  339 (703)
T ss_pred             cccccCCCceEEecc-hHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCccee
Confidence            998763  4455432 35799999999999988888888999999999999998877665543

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.59  E-value=1.5e-14  Score=137.65  Aligned_cols=282  Identities=22%  Similarity=0.344  Sum_probs=209.6

Q ss_pred             cccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC-Cc-eeEeecCCCCCEEEEEeCCCC--CEEEEeeCCCcEEEEECC
Q 008467          271 TNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GD-LKCTLSKHKGPIFSLKWNKKG--DYLLTGSCDKTAIVWDVK  346 (564)
Q Consensus       271 ~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~-~~~~~~~h~~~V~~l~~~~~~--~~l~s~s~D~~v~iwd~~  346 (564)
                      ...|.+.|..+.|+..|..|++|+.|..|.+|+.. +. ......+|...|+.-+|-|..  ..+++++.||.|++=.+.
T Consensus       138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~  217 (559)
T KOG1334|consen  138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEIL  217 (559)
T ss_pred             ccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeec
Confidence            34567889999999999999999999999999954 33 333457899999999998854  568999999999987653


Q ss_pred             -Cccee--EEEeecccCeEEEE--cCCCceEEEEeCCCeEEEEEcCCCceeeEec---CCCc---ceEEEEECCCCC-EE
Q 008467          347 -TEEWK--QQFEFHSGPTLDVD--WRNNVSFATSSTDNMIYVCKIGENRPIKTFA---GHQG---EVNCVKWDPTGS-LL  414 (564)
Q Consensus       347 -~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~---~h~~---~i~~v~~~~~~~-~l  414 (564)
                       ++.+.  ..+..|.+++..+.  ......|.+++.|+.+.-.|+....|...+.   .+..   ....++.+|... .+
T Consensus       218 ~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~f  297 (559)
T KOG1334|consen  218 ETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEF  297 (559)
T ss_pred             cccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcccc
Confidence             33333  23455677765544  4455789999999999999998877655443   2333   457888898765 78


Q ss_pred             EEEeCCCcEEEEeCCCCe------eeeecccc------cccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-
Q 008467          415 ASCSDDVTAKIWNMKQDK------YVHDLREH------SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-  481 (564)
Q Consensus       415 as~s~dg~i~iwd~~~~~------~~~~~~~~------~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-  481 (564)
                      ++|+.|-.+++||.+.-.      .+..|..|      .-.|++++|+.++..         |.++..|-.|+++.-.- 
T Consensus       298 aVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sE---------lLaSYnDe~IYLF~~~~~  368 (559)
T KOG1334|consen  298 AVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSE---------LLASYNDEDIYLFNKSMG  368 (559)
T ss_pred             ccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccc---------eeeeecccceEEeccccc
Confidence            999999999999975321      12233222      245899999876642         34455677899985332 


Q ss_pred             -C----------eEEE-EEeCCCCC--EEEEE-EcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC-CCEEEEEEccCC
Q 008467          482 -G----------KLLY-SLNGHREP--VYSLA-FSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEG  545 (564)
Q Consensus       482 -~----------~~~~-~~~~h~~~--i~~~~-~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~-~~i~~~~w~~~g  545 (564)
                       |          ..+. .++||...  |..+- |-|...|+++||.=|.|.||+-++++++..+.+. .-|++|.=+|--
T Consensus       369 ~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~  448 (559)
T KOG1334|consen  369 DGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHL  448 (559)
T ss_pred             cCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCC
Confidence             2          1222 36788643  55554 6789999999999999999999999988877664 357889889989


Q ss_pred             CEEEEEEcCCcEEEEE
Q 008467          546 DKIAACFANHTVCVLD  561 (564)
Q Consensus       546 ~~la~~~~~~~v~v~~  561 (564)
                      -.||+++.+..|+||-
T Consensus       449 PvLAsSGid~DVKIWT  464 (559)
T KOG1334|consen  449 PVLASSGIDHDVKIWT  464 (559)
T ss_pred             chhhccCCccceeeec
Confidence            9999999999999994

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=3.5e-13  Score=137.63  Aligned_cols=215  Identities=20%  Similarity=0.286  Sum_probs=139.9

Q ss_pred             CCCeEEEEECCCCCEEEEEeCC---CeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEE-EeeCCCcEEEEEC--CCc
Q 008467          275 SKDVTTLDWNGEGTLLATGSYD---GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDV--KTE  348 (564)
Q Consensus       275 ~~~V~~l~~s~~g~~l~sg~~d---g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~--~~~  348 (564)
                      ...+.+.+|||||+.|+..+.+   ..|.+|+..+.....+....+.+.+..|+|+|+.|+ +.+.++...||.+  .++
T Consensus       195 ~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~  274 (427)
T PRK02889        195 PEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGS  274 (427)
T ss_pred             CCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence            3568889999999999887753   359999987655445554556677899999999876 5667777666643  222


Q ss_pred             ceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC-CCcEEEEe
Q 008467          349 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAKIWN  427 (564)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~-dg~i~iwd  427 (564)
                      .                                          ...+..+.+......|+|||+.|+..++ +|...||.
T Consensus       275 ~------------------------------------------~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~  312 (427)
T PRK02889        275 G------------------------------------------LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYR  312 (427)
T ss_pred             C------------------------------------------cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEE
Confidence            1                                          1122233344456789999998876665 56777776


Q ss_pred             C--CCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCC---eEEEEeCCCCeEEEEEeCCCCCEEEEEEcC
Q 008467          428 M--KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS---TVKLWDVELGKLLYSLNGHREPVYSLAFSP  502 (564)
Q Consensus       428 ~--~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp  502 (564)
                      +  .++.. ..+...........|+|+|.         .|+..+.++   .|.+||+.+++.. .+... ......+|+|
T Consensus       313 ~~~~~g~~-~~lt~~g~~~~~~~~SpDG~---------~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~-~~~~~p~~sp  380 (427)
T PRK02889        313 MPASGGAA-QRVTFTGSYNTSPRISPDGK---------LLAYISRVGGAFKLYVQDLATGQVT-ALTDT-TRDESPSFAP  380 (427)
T ss_pred             EECCCCce-EEEecCCCCcCceEECCCCC---------EEEEEEccCCcEEEEEEECCCCCeE-EccCC-CCccCceECC
Confidence            5  33332 22222223345678999885         455444443   6999999887654 33322 2346789999


Q ss_pred             CCCEEEEEeCCC---cEEEEeCCCCeEEEEEec-CCCEEEEEEccC
Q 008467          503 TGEYLASGSLDK---SMHIWSLKEGKIVKTYTG-NGGIFEVCWNKE  544 (564)
Q Consensus       503 dg~~lasgs~dg---~i~iw~~~~~~~~~~~~~-~~~i~~~~w~~~  544 (564)
                      ||++|+.++.++   .+.+.++ +|........ .+.+...+|+|-
T Consensus       381 dg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        381 NGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             CCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence            999998776543   3555566 4555555543 355778899873

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.59  E-value=3e-15  Score=150.55  Aligned_cols=234  Identities=21%  Similarity=0.387  Sum_probs=176.8

Q ss_pred             EeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcC-CCceEEEEeCCCeEEEEEcCC
Q 008467          310 CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGE  388 (564)
Q Consensus       310 ~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~  388 (564)
                      ..+.+|.++|+|+.|...|.++++|+.|..++||...++.+......|.+.+.++.-. ++..+++++.|..|++|.+..
T Consensus       184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~  263 (1113)
T KOG0644|consen  184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD  263 (1113)
T ss_pred             HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC
Confidence            3567899999999999999999999999999999999999999999999999888765 455668889999999999999


Q ss_pred             CceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeee---ccc-ccccEEEEEEccCCCCCCCCCCcEE
Q 008467          389 NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD---LRE-HSKEIYTIRWSPTGSGTNNPNQQLI  464 (564)
Q Consensus       389 ~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~---~~~-~~~~i~~i~~~p~~~~~~~~~~~~~  464 (564)
                      +.|+..+.||++.|++++|+|-    ++.+.||++++||.+-.-.+..   +.. ....+.++.|...+.         -
T Consensus       264 ~~pvsvLrghtgavtaiafsP~----~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~---------~  330 (1113)
T KOG0644|consen  264 GAPVSVLRGHTGAVTAIAFSPR----ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGD---------R  330 (1113)
T ss_pred             CchHHHHhccccceeeeccCcc----ccCCCCCceEeccccccccccCCCCCCcccccceeeeecccccc---------c
Confidence            9999999999999999999995    4889999999999871111100   000 112334444444332         4


Q ss_pred             EEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCeEEEEEecCC-CEEEEEEc
Q 008467          465 LASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG-EYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN  542 (564)
Q Consensus       465 l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg-~~lasgs~dg~i~iw~~~~~~~~~~~~~~~-~i~~~~w~  542 (564)
                      ++|++.|+.-+.|......      .+...+.-+.++.|- .+.+++-.+-.+++|++-+|.+++...++. .++-|.++
T Consensus       331 f~Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~H  404 (1113)
T KOG0644|consen  331 FLTGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVH  404 (1113)
T ss_pred             cccccCCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeec
Confidence            6789999988888654211      122122222222232 466677778899999999998888776654 57889999


Q ss_pred             cCCCEEE-EEEcCCcEEEEEe
Q 008467          543 KEGDKIA-ACFANHTVCVLDF  562 (564)
Q Consensus       543 ~~g~~la-~~~~~~~v~v~~~  562 (564)
                      |=..+++ .+..||...|||+
T Consensus       405 pfn~ri~msag~dgst~iwdi  425 (1113)
T KOG0644|consen  405 PFNPRIAMSAGYDGSTIIWDI  425 (1113)
T ss_pred             CCCcHhhhhccCCCceEeeec
Confidence            9887666 4467899999986

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.59  E-value=4.7e-13  Score=120.41  Aligned_cols=117  Identities=29%  Similarity=0.652  Sum_probs=91.0

Q ss_pred             CCcceEEEEECCCCCEEEEE--eCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeC---CC
Q 008467          398 HQGEVNCVKWDPTGSLLASC--SDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF---DS  472 (564)
Q Consensus       398 h~~~i~~v~~~~~~~~las~--s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~---dg  472 (564)
                      ..++|.+++|+|+|+.||.+  ..+..|.+||.+ .+.+..+.  ...+.++.|+|.|.         +|+.|+.   .|
T Consensus        58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~---------~l~~~g~~n~~G  125 (194)
T PF08662_consen   58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGR---------FLVLAGFGNLNG  125 (194)
T ss_pred             CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCC---------EEEEEEccCCCc
Confidence            34579999999999987654  457799999997 55555553  45678999999986         5666653   47


Q ss_pred             eEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC------CCcEEEEeCCCCeEEEE
Q 008467          473 TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL------DKSMHIWSLKEGKIVKT  529 (564)
Q Consensus       473 ~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~------dg~i~iw~~~~~~~~~~  529 (564)
                      .|.+||+++.+.+.... |. .++.++|||||++|++++.      |+.++||+.. |+++..
T Consensus       126 ~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~  185 (194)
T PF08662_consen  126 DLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYK  185 (194)
T ss_pred             EEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEe
Confidence            79999999888887765 33 4789999999999998864      7789999985 665554

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=4.4e-14  Score=136.12  Aligned_cols=221  Identities=24%  Similarity=0.379  Sum_probs=154.0

Q ss_pred             cccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC-ceeE-eecCCCCCEEEEEeCCC--CCEEEEeeCCCcEEEEECC
Q 008467          271 TNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKC-TLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVK  346 (564)
Q Consensus       271 ~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~-~~~~-~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~  346 (564)
                      ..+|.+.|.|++|+.+|.+|++|+.|-.+.|||.-. ++.. .-.+|...|++++|-|.  ...+++|+.|..|+++|+.
T Consensus        46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~  125 (758)
T KOG1310|consen   46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLD  125 (758)
T ss_pred             hccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecc
Confidence            346788999999999999999999999999999653 3333 45789999999999984  4578999999999999986


Q ss_pred             CcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCC-CEEEEEeCCCcEEE
Q 008467          347 TEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKI  425 (564)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~-~~las~s~dg~i~i  425 (564)
                      ..+-.                        +.|       -+...+...+..|...|..++--|++ ..+.++++||+|+-
T Consensus       126 ~~~~~------------------------~~d-------~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQ  174 (758)
T KOG1310|consen  126 SSKEG------------------------GMD-------HGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQ  174 (758)
T ss_pred             ccccc------------------------ccc-------cCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceee
Confidence            42100                        000       01123344566788889999999998 67899999999999


Q ss_pred             EeCCCCee-eee------c---ccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC--------Ce----
Q 008467          426 WNMKQDKY-VHD------L---REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL--------GK----  483 (564)
Q Consensus       426 wd~~~~~~-~~~------~---~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~--------~~----  483 (564)
                      +|++.... ...      +   ...--...++..+|..        ..+|+.|+.|-..++||.+.        +.    
T Consensus       175 yDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~r--------p~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~  246 (758)
T KOG1310|consen  175 YDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSR--------PYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTC  246 (758)
T ss_pred             ecccCCccCCccccccHHHHHhchhhheeeeeeecCCC--------CceEEecCCCchhhhhhhhhhccCCCCCccccCC
Confidence            99975321 111      1   1111234666776654        35899999999999999431        11    


Q ss_pred             ------EEEEE-eCCC-----------CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q 008467          484 ------LLYSL-NGHR-----------EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY  530 (564)
Q Consensus       484 ------~~~~~-~~h~-----------~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~  530 (564)
                            ++..+ .+|.           ..++-+.|+|+|.-|...=..-.|++||+..++....|
T Consensus       247 pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y  311 (758)
T KOG1310|consen  247 PPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY  311 (758)
T ss_pred             CCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence                  22221 1222           12566899999976554333346999999887755444

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.57  E-value=1.9e-13  Score=124.70  Aligned_cols=269  Identities=21%  Similarity=0.428  Sum_probs=176.5

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCc------eeEeecCCC------------CCEEEEEeCCCCC--EEEEe
Q 008467          275 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD------LKCTLSKHK------------GPIFSLKWNKKGD--YLLTG  334 (564)
Q Consensus       275 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~------~~~~~~~h~------------~~V~~l~~~~~~~--~l~s~  334 (564)
                      ..-|.++.|...|.+|++|..+|.|.++..+..      ....++.|.            ..|..++|.++++  .++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            456889999999999999999999999975422      233455554            3578899998764  57788


Q ss_pred             eCCCcEEEEECCCcceeE-EEeec-ccCeEEEEcCCCceE-EEEeCCCeEEEEEcCCCceeeEec-CCCcceEEEEECCC
Q 008467          335 SCDKTAIVWDVKTEEWKQ-QFEFH-SGPTLDVDWRNNVSF-ATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDPT  410 (564)
Q Consensus       335 s~D~~v~iwd~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~-~~~~~d~~i~~~~~~~~~~~~~~~-~h~~~i~~v~~~~~  410 (564)
                      ..|++|++|-+....... .+... ..+...   .....+ +....+-.+      .-.|.+.+. +|.-.|+++.++.|
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~---~~~lr~p~~~~~~~~v------ea~prRv~aNaHtyhiNSIS~NsD  175 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGT---ITSLRLPVEGRHDLEV------EASPRRVYANAHTYHINSISVNSD  175 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCc---cceeeceeecccccee------eeeeeeeccccceeEeeeeeecCc
Confidence            899999999876543221 00000 000000   000000 000111111      012344443 68889999999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCe---eeeecccc-----cccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC
Q 008467          411 GSLLASCSDDVTAKIWNMKQDK---YVHDLREH-----SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG  482 (564)
Q Consensus       411 ~~~las~s~dg~i~iwd~~~~~---~~~~~~~~-----~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~  482 (564)
                      +..++|+ +|=.|.+|++.-..   .+..++.+     ..-|++..|+|...        .+++-.|..|+|++-|++..
T Consensus       176 ~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c--------n~f~YSSSKGtIrLcDmR~~  246 (433)
T KOG1354|consen  176 KETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC--------NVFVYSSSKGTIRLCDMRQS  246 (433)
T ss_pred             cceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc--------cEEEEecCCCcEEEeechhh
Confidence            9988765 67789999975321   12333333     23466777777543        47788888999999999843


Q ss_pred             eE------EEEEe----------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEEEEecC------------
Q 008467          483 KL------LYSLN----------GHREPVYSLAFSPTGEYLASGSLDKSMHIWSL-KEGKIVKTYTGN------------  533 (564)
Q Consensus       483 ~~------~~~~~----------~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~-~~~~~~~~~~~~------------  533 (564)
                      .+      ++...          .--..|..+.||++|+||++-+. -+|++||+ ...+.+.+++.+            
T Consensus       247 aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYE  325 (433)
T KOG1354|consen  247 ALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYE  325 (433)
T ss_pred             hhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhh
Confidence            22      11111          11235788999999999987554 47999999 456677777532            


Q ss_pred             -CCE---EEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467          534 -GGI---FEVCWNKEGDKIAACFANHTVCVLDF  562 (564)
Q Consensus       534 -~~i---~~~~w~~~g~~la~~~~~~~v~v~~~  562 (564)
                       .+|   +.++|+-++.++++|+-+..++||+.
T Consensus       326 nD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~  358 (433)
T KOG1354|consen  326 NDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNL  358 (433)
T ss_pred             ccchhheeEEEEcCCcceEecccccceEEEecC
Confidence             344   47999999999999999888999884

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.56  E-value=1.2e-12  Score=121.62  Aligned_cols=272  Identities=17%  Similarity=0.258  Sum_probs=182.7

Q ss_pred             cceEEEEECCCC--CEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEe
Q 008467          217 SEVCACAWSPAG--SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS  294 (564)
Q Consensus       217 ~~V~~~~~sp~~--~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~  294 (564)
                      ..|..++|.-++  ..|...+.|..+.+..+.........       ..++..    ....+.|..++.. | ..|++|-
T Consensus        56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~-------~~~~~~----~l~~~~I~gl~~~-d-g~Litc~  122 (412)
T KOG3881|consen   56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSL-------DDAKTV----SLGTKSIKGLKLA-D-GTLITCV  122 (412)
T ss_pred             hhhhhheeecCCceeEeeccccCcccccccccCCcccccc-------cccccc----ccccccccchhhc-C-CEEEEEe
Confidence            346667777654  46666667777777766554322110       001111    1123445554433 2 3577888


Q ss_pred             CCCeEEEEECC-----CceeEeecCCCCCEEEEEeCCCCCEEE-EeeCC--CcEEEEECCCcceeEEEeecccCeEEEEc
Q 008467          295 YDGQARIWSTN-----GDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCD--KTAIVWDVKTEEWKQQFEFHSGPTLDVDW  366 (564)
Q Consensus       295 ~dg~i~vw~~~-----~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  366 (564)
                      .+|.+.+|...     ......+..+ .++..+.-++...+|+ +|+..  ..+.|||+...  .+.|.....+.     
T Consensus       123 ~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~--~qiw~aKNvpn-----  194 (412)
T KOG3881|consen  123 SSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS--KQIWSAKNVPN-----  194 (412)
T ss_pred             cCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccc--eeeeeccCCCC-----
Confidence            99999999865     2333334333 4566777777666655 58888  78999999876  44443322111     


Q ss_pred             CCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC--CCEEEEEeCCCcEEEEeCCCC-eeeeeccccccc
Q 008467          367 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKIWNMKQD-KYVHDLREHSKE  443 (564)
Q Consensus       367 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~--~~~las~s~dg~i~iwd~~~~-~~~~~~~~~~~~  443 (564)
                        +.      -+-.|-+|                 ++.+.|-+.  ...||+|+.-+.+|+||.+.+ +++..|..-..+
T Consensus       195 --D~------L~LrVPvW-----------------~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~  249 (412)
T KOG3881|consen  195 --DR------LGLRVPVW-----------------ITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENP  249 (412)
T ss_pred             --cc------ccceeeee-----------------eccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCc
Confidence              00      01112223                 345666665  678999999999999999865 456777766778


Q ss_pred             EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEE-EeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 008467          444 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYS-LNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK  522 (564)
Q Consensus       444 i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~  522 (564)
                      +.++...|.+.         .+.+|..-|.+..||++.++.+.. +.+..+.|.+|..+|.+++||++|.|..|+|+|++
T Consensus       250 is~~~l~p~gn---------~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~k  320 (412)
T KOG3881|consen  250 ISSTGLTPSGN---------FIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIK  320 (412)
T ss_pred             ceeeeecCCCc---------EEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecc
Confidence            88888888775         688899999999999999998876 88889999999999999999999999999999999


Q ss_pred             CCeEEEEEecCCCEEEEEEcc
Q 008467          523 EGKIVKTYTGNGGIFEVCWNK  543 (564)
Q Consensus       523 ~~~~~~~~~~~~~i~~~~w~~  543 (564)
                      +.+++....-...++.+-+.+
T Consensus       321 trkll~kvYvKs~lt~il~~~  341 (412)
T KOG3881|consen  321 TRKLLHKVYVKSRLTFILLRD  341 (412)
T ss_pred             cchhhhhhhhhccccEEEecC
Confidence            977664433334445554433

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.55  E-value=3.6e-13  Score=122.20  Aligned_cols=302  Identities=18%  Similarity=0.315  Sum_probs=195.3

Q ss_pred             EEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEE-eCCCeE
Q 008467          221 ACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG-SYDGQA  299 (564)
Q Consensus       221 ~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg-~~dg~i  299 (564)
                      -|+|||+|+++|+.+.- .+.|=|..+-+.              -+.-..    -..|.-+.|..|..+++++ +.++.|
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~--------------~qlf~c----ldki~yieW~ads~~ilC~~yk~~~v   73 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQL--------------HQLFLC----LDKIVYIEWKADSCHILCVAYKDPKV   73 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhH--------------HHHHHH----HHHhhheeeeccceeeeeeeeccceE
Confidence            47899999999998754 555655443211              000000    1346778899988877765 567899


Q ss_pred             EEEECC-CceeEeecCCCCCEEEEEeCCCCCE-EEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeC
Q 008467          300 RIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDY-LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSST  377 (564)
Q Consensus       300 ~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (564)
                      .+|+.. .+..+.+..-..++.+++|+|+|+. |.+...|-.|.+|.+.+.+.... ......+..+.+..+..|++-..
T Consensus        74 qvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~s  152 (447)
T KOG4497|consen   74 QVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILS  152 (447)
T ss_pred             EEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeee
Confidence            999965 4566778888889999999999966 55677889999999987654321 11122334556666666644221


Q ss_pred             CC----eEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCC
Q 008467          378 DN----MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG  453 (564)
Q Consensus       378 d~----~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~  453 (564)
                      ..    .+.+.....-..++.|.-.+-..+.+.|+|||..||         +||.--...+.. -...-.+..+.|+|.+
T Consensus       153 RrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~la---------Vwd~~Leykv~a-Ye~~lG~k~v~wsP~~  222 (447)
T KOG4497|consen  153 RRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLA---------VWDNVLEYKVYA-YERGLGLKFVEWSPCN  222 (447)
T ss_pred             cccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEE---------Eecchhhheeee-eeeccceeEEEecccc
Confidence            11    000000001112334444455677899999999876         444211111100 1122457889999977


Q ss_pred             CCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEE------------------------------------------------
Q 008467          454 SGTNNPNQQLILASASFDSTVKLWDVELGKLL------------------------------------------------  485 (564)
Q Consensus       454 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~------------------------------------------------  485 (564)
                      .         +|+.|+.|+.+||-+--+-+..                                                
T Consensus       223 q---------flavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se  293 (447)
T KOG4497|consen  223 Q---------FLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESE  293 (447)
T ss_pred             c---------eEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccch
Confidence            5         7999999999988653211100                                                


Q ss_pred             ------------EEEeC------CCCCEEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCeEEEEEecCCCEEEEEEccCC
Q 008467          486 ------------YSLNG------HREPVYSLAFSPTGEYLASGSL--DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEG  545 (564)
Q Consensus       486 ------------~~~~~------h~~~i~~~~~spdg~~lasgs~--dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g  545 (564)
                                  ..++.      -.-.+.-++||+|..|+||-..  -+.+-+||++.-++-..+.....|....|+|.-
T Consensus       294 ~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~  373 (447)
T KOG4497|consen  294 TIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGR  373 (447)
T ss_pred             hhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCC
Confidence                        00000      0123566899999999998654  468999999988776667677889999999999


Q ss_pred             CEEEEEEcCCcEEEEE
Q 008467          546 DKIAACFANHTVCVLD  561 (564)
Q Consensus       546 ~~la~~~~~~~v~v~~  561 (564)
                      ..|+.|.+...+.+|-
T Consensus       374 prL~vctg~srLY~W~  389 (447)
T KOG4497|consen  374 PRLVVCTGKSRLYFWA  389 (447)
T ss_pred             ceEEEEcCCceEEEEc
Confidence            9999998877777663

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.54  E-value=2e-12  Score=128.37  Aligned_cols=296  Identities=17%  Similarity=0.284  Sum_probs=202.5

Q ss_pred             ceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCC--CCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeC
Q 008467          218 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQN--GPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY  295 (564)
Q Consensus       218 ~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~  295 (564)
                      ...|++|+....++|.||.||.+++-.+.+.........  .+.+...    .....+|...|.-+.|+.+.+.|.|...
T Consensus        16 kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsm----NQtLeGH~~sV~vvTWNe~~QKLTtSDt   91 (1189)
T KOG2041|consen   16 KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSM----NQTLEGHNASVMVVTWNENNQKLTTSDT   91 (1189)
T ss_pred             eEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccch----hhhhccCcceEEEEEeccccccccccCC
Confidence            457999999999999999999999999877554332211  1111111    1223456788999999999999999999


Q ss_pred             CCeEEEEECC-Ccee--EeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceE
Q 008467          296 DGQARIWSTN-GDLK--CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF  372 (564)
Q Consensus       296 dg~i~vw~~~-~~~~--~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (564)
                      +|.|.||-.- |...  ..-...++-|.+++|+.+|..++....||.|.+=.+....                       
T Consensus        92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR-----------------------  148 (1189)
T KOG2041|consen   92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR-----------------------  148 (1189)
T ss_pred             CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce-----------------------
Confidence            9999999753 3221  2234566789999999999999999999988775443221                       


Q ss_pred             EEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCe-------e-e---eeccccc
Q 008467          373 ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK-------Y-V---HDLREHS  441 (564)
Q Consensus       373 ~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~-------~-~---~~~~~~~  441 (564)
                                +|.    +   .+.|  .....+.|++|.+.+..+-..|.+.++|....-       + +   ..+....
T Consensus       149 ----------Iwg----K---eLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~  209 (1189)
T KOG2041|consen  149 ----------IWG----K---ELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFP  209 (1189)
T ss_pred             ----------ecc----h---hcch--heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCC
Confidence                      121    0   0111  012257799998887778888999999865321       1 1   1122233


Q ss_pred             ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC--------
Q 008467          442 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD--------  513 (564)
Q Consensus       442 ~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~d--------  513 (564)
                      ..|..+.|.........|+. ..|+.+-.+|.+.|..-.+......+. ..-.|..+.|+++|.+||.+|.|        
T Consensus       210 ~kia~i~w~~g~~~~v~pdr-P~lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d  287 (1189)
T KOG2041|consen  210 TKIAEIEWNTGPYQPVPPDR-PRLAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTD  287 (1189)
T ss_pred             ccccceeeccCccccCCCCC-CEEEEEEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCcccccCccc
Confidence            34677788654333333444 468889999999887655433222222 12457889999999999998865        


Q ss_pred             -CcEEEEeCCCCeEEEEEecCC-CEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          514 -KSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       514 -g~i~iw~~~~~~~~~~~~~~~-~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                       +.|++|. .-|+++.++..++ .|++++|-..|-++|.+ .|+.+.+-++|
T Consensus       288 ~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~A-vdsfiyfanIR  337 (1189)
T KOG2041|consen  288 SNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAIA-VDSFIYFANIR  337 (1189)
T ss_pred             cceEEEec-cchhheEEEecCCceeeeeEEcCCceEEEEE-ecceEEEEeec
Confidence             3566665 3578888887654 69999999999999988 56678777776

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.54  E-value=3.8e-13  Score=129.59  Aligned_cols=241  Identities=20%  Similarity=0.276  Sum_probs=158.4

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEECCCc--e----eEeecCCCCCEEEEEe-----CCCCCEEEEeeCCCcEEEEE
Q 008467          276 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGD--L----KCTLSKHKGPIFSLKW-----NKKGDYLLTGSCDKTAIVWD  344 (564)
Q Consensus       276 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~--~----~~~~~~h~~~V~~l~~-----~~~~~~l~s~s~D~~v~iwd  344 (564)
                      ..++...++..|.+|+-.- ...+.+|+..|.  .    ...+-.-++| ++-.|     .|.+--++.|-.-|.|.+.|
T Consensus       124 g~~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P-~cHdfn~~~a~~~g~dllIGf~tGqvq~id  201 (636)
T KOG2394|consen  124 GIVTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSP-TCHDFNSFTATPKGLDLLIGFTTGQVQLID  201 (636)
T ss_pred             cceeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCC-ceecccccccCCCCcceEEeeccCceEEec
Confidence            3456666677777766533 346788876542  1    1111112222 22233     35666788888888999988


Q ss_pred             CCCcceeEEEe----ecccCeEEEEcC--CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEe
Q 008467          345 VKTEEWKQQFE----FHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS  418 (564)
Q Consensus       345 ~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s  418 (564)
                      ....++.+.|.    .....+.++.|.  ++..|+.+..++.+++++......      -+  -.+-...+++..++.. 
T Consensus       202 p~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~------~t--~p~~~~~k~~~~f~i~-  272 (636)
T KOG2394|consen  202 PINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCG------AT--APSYQALKDGDQFAIL-  272 (636)
T ss_pred             chhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccccc------CC--CCcccccCCCCeeEEe-
Confidence            76544333221    223567888896  456788888999999887621100      00  0111122344444322 


Q ss_pred             CCCcEEEEeCC-CCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEE
Q 008467          419 DDVTAKIWNMK-QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYS  497 (564)
Q Consensus       419 ~dg~i~iwd~~-~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~  497 (564)
                            .|..+ +..++..+.--.+.|..++|+|+|.         +||+.|.||.+||||..+.+++..++..-+...|
T Consensus       273 ------t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~---------~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLC  337 (636)
T KOG2394|consen  273 ------TSKSKKTRNPVARWHIGEGSINEFAFSPDGK---------YLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLC  337 (636)
T ss_pred             ------eeeccccCCccceeEeccccccceeEcCCCc---------eEEEEecCceEEEeeccHHHHHHHHHhhccceEE
Confidence                  22211 1234433333445788999999886         8999999999999999988877777766778999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCC-CEEEEEEc
Q 008467          498 LAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN  542 (564)
Q Consensus       498 ~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~-~i~~~~w~  542 (564)
                      ++|||||+|||+|++|..|.||.+..++++..-.++. .|..|+|+
T Consensus       338 vcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  338 VCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD  383 (636)
T ss_pred             EEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence            9999999999999999999999999999988766653 46777777

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.54  E-value=7.1e-13  Score=121.11  Aligned_cols=323  Identities=19%  Similarity=0.286  Sum_probs=214.7

Q ss_pred             eEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE
Q 008467          210 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL  289 (564)
Q Consensus       210 ~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~  289 (564)
                      ..++||.+.|++...-|...-+.+.+.|.++|||--.+.....     |    .+++      ...++++++.++++...
T Consensus        18 ~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~w-----p----sI~~------~mP~~~~~~~y~~e~~~   82 (404)
T KOG1409|consen   18 SKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYW-----P----SIYH------YMPSPCSAMEYVSESRR   82 (404)
T ss_pred             hhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccC-----c----hhhh------hCCCCceEeeeeccceE
Confidence            4568999999999888988889999999999999532211100     0    1111      12467999999999999


Q ss_pred             EEEEeCCCeEEEEECCCc-----eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeeccc---Ce
Q 008467          290 LATGSYDGQARIWSTNGD-----LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG---PT  361 (564)
Q Consensus       290 l~sg~~dg~i~vw~~~~~-----~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~---~~  361 (564)
                      |++|-.+|++.=+.....     .......|.+.|+.+-|+-...++++.+.|+.+.-.-.+.+..+..+.+...   ..
T Consensus        83 L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~  162 (404)
T KOG1409|consen   83 LYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQ  162 (404)
T ss_pred             EEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCc
Confidence            999999999988865322     2234467999999999999999999999998765444455444433332221   11


Q ss_pred             EEEEcCCCceEEEEeCCCeEEEEEcC--CCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCee-eeecc
Q 008467          362 LDVDWRNNVSFATSSTDNMIYVCKIG--ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY-VHDLR  438 (564)
Q Consensus       362 ~~~~~~~~~~~~~~~~d~~i~~~~~~--~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~-~~~~~  438 (564)
                      .++.     ....+...+.|....+.  .-.++.++.+|.+.+.+++|.+...+|.+|..|..+.+||+-..+- ...+.
T Consensus       163 ~d~~-----~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~  237 (404)
T KOG1409|consen  163 FDAL-----YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQ  237 (404)
T ss_pred             eeeE-----EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeec
Confidence            1211     11223334455544443  3457889999999999999999999999999999999999865443 46778


Q ss_pred             cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE---EE--------------------------e
Q 008467          439 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY---SL--------------------------N  489 (564)
Q Consensus       439 ~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~---~~--------------------------~  489 (564)
                      +|...+..+...+...         .|.+++.||.|-+|+....+...   ..                          .
T Consensus       238 gh~~kV~~l~~~~~t~---------~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr  308 (404)
T KOG1409|consen  238 GHNDKVQALSYAQHTR---------QLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLR  308 (404)
T ss_pred             cchhhhhhhhhhhhhe---------eeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhh
Confidence            8888888887766543         68899999999999986433210   00                          0


Q ss_pred             CC-----CCCEEEEEEcCCCCEEEEEeCCCcEE--------EEeCCCCeEEEEE-ecCCCEEEEEEccCCCEEEEEEcCC
Q 008467          490 GH-----REPVYSLAFSPTGEYLASGSLDKSMH--------IWSLKEGKIVKTY-TGNGGIFEVCWNKEGDKIAACFANH  555 (564)
Q Consensus       490 ~h-----~~~i~~~~~spdg~~lasgs~dg~i~--------iw~~~~~~~~~~~-~~~~~i~~~~w~~~g~~la~~~~~~  555 (564)
                      -|     ...|...+-| ......+-+..-.++        |+|... ..+.++ +.+.+|+.+....+-..|++++.|.
T Consensus       309 ~h~crkcg~avc~~c~s-~~~~~p~mg~e~~vR~~~~c~~~i~~~~~-t~LA~phei~tgItamhlqetlglLvTsG~~R  386 (404)
T KOG1409|consen  309 QHHCRKCGKAVCGKCSS-NRSSYPTMGFEFSVRVCDSCYPTIKDEER-TPLAIPHEIKTGITAMHLQETLGLLVTSGTDR  386 (404)
T ss_pred             hhhhhhhhhhcCccccc-CccccccccceeEEEEecccchhhhcCCC-CccccccccccceeEEEhhhhccceeecCCce
Confidence            01     0111111111 111112222222233        333332 112222 3456899999998888999999999


Q ss_pred             cEEEEEee
Q 008467          556 TVCVLDFR  563 (564)
Q Consensus       556 ~v~v~~~~  563 (564)
                      -+.|||+|
T Consensus       387 vi~iwd~~  394 (404)
T KOG1409|consen  387 VIKIWDVR  394 (404)
T ss_pred             EEEEEech
Confidence            99999987

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.51  E-value=9.7e-12  Score=127.65  Aligned_cols=206  Identities=20%  Similarity=0.248  Sum_probs=139.8

Q ss_pred             CeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCC---CcEEEEECCCcceeEEEeecccCeEEEEcCCCceEE
Q 008467          297 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD---KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA  373 (564)
Q Consensus       297 g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (564)
                      ..|.+++.++.....+..+...+.+.+|+|+|++|+.++.+   ..|.+||+.++....                     
T Consensus       170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~---------------------  228 (417)
T TIGR02800       170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK---------------------  228 (417)
T ss_pred             ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE---------------------
Confidence            36778887766566666777789999999999999877654   368888877653211                     


Q ss_pred             EEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEE-EEeCCC--cEEEEeCCCCeeeeecccccccEEEEEEc
Q 008467          374 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDV--TAKIWNMKQDKYVHDLREHSKEIYTIRWS  450 (564)
Q Consensus       374 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~la-s~s~dg--~i~iwd~~~~~~~~~~~~~~~~i~~i~~~  450 (564)
                                           +..+.+.+.+++|+|||+.|+ +.+.++  .|.+|++.++.. ..+..+........|+
T Consensus       229 ---------------------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s  286 (417)
T TIGR02800       229 ---------------------VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWS  286 (417)
T ss_pred             ---------------------eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEEC
Confidence                                 111233445688999998765 444444  588889887654 3344444444567888


Q ss_pred             cCCCCCCCCCCcEEEEEEeCCC--eEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCe
Q 008467          451 PTGSGTNNPNQQLILASASFDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK---SMHIWSLKEGK  525 (564)
Q Consensus       451 p~~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg---~i~iw~~~~~~  525 (564)
                      |++.        .++++...++  .|.++|+..++. ..+..+...+..++|+|||++|+.++.++   .|.+|++.++.
T Consensus       287 ~dg~--------~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~  357 (417)
T TIGR02800       287 PDGK--------SIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG  357 (417)
T ss_pred             CCCC--------EEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC
Confidence            8764        2334443333  588888876654 34444555677889999999999888776   89999998765


Q ss_pred             EEEEEecCCCEEEEEEccCCCEEEEEEcCC
Q 008467          526 IVKTYTGNGGIFEVCWNKEGDKIAACFANH  555 (564)
Q Consensus       526 ~~~~~~~~~~i~~~~w~~~g~~la~~~~~~  555 (564)
                      .. .+.........+|+|+|++|++++.++
T Consensus       358 ~~-~l~~~~~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       358 ER-VLTDTGLDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             eE-EccCCCCCCCceECCCCCEEEEEEeCC
Confidence            43 233233345678999999998877654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.51  E-value=3.1e-11  Score=116.04  Aligned_cols=312  Identities=17%  Similarity=0.261  Sum_probs=203.4

Q ss_pred             cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC
Q 008467          217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD  296 (564)
Q Consensus       217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d  296 (564)
                      -++..++|||.|++|++...- -|.+|.-....             .+..      .....|..+.|||.+++|.+=+..
T Consensus        33 ~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~-------------~l~~------~~~~~V~~~~fSP~~kYL~tw~~~   92 (561)
T COG5354          33 WPVAYVSESPLGTYLFSEHAA-GVECWGGPSKA-------------KLVR------FRHPDVKYLDFSPNEKYLVTWSRE   92 (561)
T ss_pred             cchhheeecCcchheehhhcc-ceEEccccchh-------------heee------eecCCceecccCcccceeeeeccC
Confidence            356788999999999986544 47788643321             0111      113569999999999999987664


Q ss_pred             C---------------eEEEEECC-CceeEeecCCCCC--EE-EEEeCCCCCEEEEeeCCCcEEEEECCCcceeE-EEe-
Q 008467          297 G---------------QARIWSTN-GDLKCTLSKHKGP--IF-SLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ-QFE-  355 (564)
Q Consensus       297 g---------------~i~vw~~~-~~~~~~~~~h~~~--V~-~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~-~~~-  355 (564)
                      +               .+.+||.. |.++..+..-..+  .+ -++|+-+.++++-. ....+.|+++ +..... .+. 
T Consensus        93 pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~  170 (561)
T COG5354          93 PIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKN  170 (561)
T ss_pred             CccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhh
Confidence            4               48999965 5566666665555  55 67899888877644 3357899987 433221 111 


Q ss_pred             ecccCeEEEEcCCC---ceEEE-----EeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC--------
Q 008467          356 FHSGPTLDVDWRNN---VSFAT-----SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD--------  419 (564)
Q Consensus       356 ~~~~~~~~~~~~~~---~~~~~-----~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~--------  419 (564)
                      .....+.++.|.+.   ..++.     .+...++.+|.+..+.++.+-.-..-.-..+.|++.|++|..--.        
T Consensus       171 lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKs  250 (561)
T COG5354         171 LRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKS  250 (561)
T ss_pred             ccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccc
Confidence            11123455555433   22222     245677888888866665432222223346889998887543211        


Q ss_pred             ---CCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEE
Q 008467          420 ---DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVY  496 (564)
Q Consensus       420 ---dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~  496 (564)
                         ...+.|+++....+.... ...++|...+|.|.+.       +..+++|-++..+.++|++.. ..+.+.  ...=+
T Consensus       251 yfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~-------~F~vi~g~~pa~~s~~~lr~N-l~~~~P--e~~rN  319 (561)
T COG5354         251 YFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSS-------RFAVISGYMPASVSVFDLRGN-LRFYFP--EQKRN  319 (561)
T ss_pred             eeccceEEEEeecccccceec-cccccceeeeecccCC-------ceeEEecccccceeecccccc-eEEecC--Ccccc
Confidence               234667777644332222 4578999999999875       346778889999999999844 554443  33457


Q ss_pred             EEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEE-EEecCCCEEEEEEccCCCEEEEEEc------CCcEEEEEe
Q 008467          497 SLAFSPTGEYLASGSLD---KSMHIWSLKEGKIVK-TYTGNGGIFEVCWNKEGDKIAACFA------NHTVCVLDF  562 (564)
Q Consensus       497 ~~~~spdg~~lasgs~d---g~i~iw~~~~~~~~~-~~~~~~~i~~~~w~~~g~~la~~~~------~~~v~v~~~  562 (564)
                      .+.|||.+++++.++.|   |.|-||+.....++. .+.+.. ..-+.|+|||+++-+.+.      |..+.|||+
T Consensus       320 T~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n-~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v  394 (561)
T COG5354         320 TIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN-TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDV  394 (561)
T ss_pred             cccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC-ceEeeccCCceEEEecCCCcccccCcceEEEEe
Confidence            78999999999998876   689999998765554 454332 233469999998887754      345778876

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.50  E-value=2.5e-11  Score=118.09  Aligned_cols=272  Identities=17%  Similarity=0.370  Sum_probs=168.7

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEECCCc-eeEeecCCCCCEEEEEeCCCCCEEEEe-----eCCC-----cEEEEE
Q 008467          276 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTG-----SCDK-----TAIVWD  344 (564)
Q Consensus       276 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~-----s~D~-----~v~iwd  344 (564)
                      .+....++|++|++++.+. +..++|++.... ...+..  ...++.+.|+|.|++|.+-     ..++     .+.+|+
T Consensus        35 ~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~--~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~  111 (566)
T KOG2315|consen   35 RPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVE--LKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN  111 (566)
T ss_pred             CcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEec--cceeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence            3467788999999988755 568888886533 222222  2278999999999998762     2233     467999


Q ss_pred             CCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCc----------------------------------
Q 008467          345 VKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR----------------------------------  390 (564)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~----------------------------------  390 (564)
                      +.++.....+...........|..+..+++=-..+.+++++....+                                  
T Consensus       112 vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kG  191 (566)
T KOG2315|consen  112 VETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKG  191 (566)
T ss_pred             eccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCC
Confidence            9885433333322222123333333222222222223333222211                                  


Q ss_pred             ---eeeEec----C-C---------CcceEEEEECCCCCE-EE--EEeCCC---------cEEEEeCCCCeeeeeccccc
Q 008467          391 ---PIKTFA----G-H---------QGEVNCVKWDPTGSL-LA--SCSDDV---------TAKIWNMKQDKYVHDLREHS  441 (564)
Q Consensus       391 ---~~~~~~----~-h---------~~~i~~v~~~~~~~~-la--s~s~dg---------~i~iwd~~~~~~~~~~~~~~  441 (564)
                         .++.+.    + |         ...=..+.|++-|+- |+  +..-|.         ++.+.++....++..+. ..
T Consensus       192 aPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~  270 (566)
T KOG2315|consen  192 APASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KE  270 (566)
T ss_pred             CCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CC
Confidence               011111    0 0         011124567666542 22  222233         45566655434433332 36


Q ss_pred             ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC---CcEEE
Q 008467          442 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD---KSMHI  518 (564)
Q Consensus       442 ~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~d---g~i~i  518 (564)
                      ++|+++.|+|.+.       +..++.|-+-..+.|+|++ +.+++.+.  .+|-+++-|+|.|++|+.+|.+   |.|-|
T Consensus       271 GPVhdv~W~~s~~-------EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEv  340 (566)
T KOG2315|consen  271 GPVHDVTWSPSGR-------EFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEV  340 (566)
T ss_pred             CCceEEEECCCCC-------EEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEE
Confidence            8999999999885       3567778899999999998 77777764  4677999999999999998875   78999


Q ss_pred             EeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcC------CcEEEEEe
Q 008467          519 WSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN------HTVCVLDF  562 (564)
Q Consensus       519 w~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~------~~v~v~~~  562 (564)
                      ||+.+.+++..+.... -+-+.|+|||.++.+|...      ..+.||+.
T Consensus       341 wDv~n~K~i~~~~a~~-tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy  389 (566)
T KOG2315|consen  341 WDVPNRKLIAKFKAAN-TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY  389 (566)
T ss_pred             EeccchhhccccccCC-ceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence            9999988887776443 3456899999999888553      45777774

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.50  E-value=1.6e-12  Score=118.81  Aligned_cols=313  Identities=17%  Similarity=0.299  Sum_probs=174.2

Q ss_pred             cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccc--------cCCCCeEEEEECCCC-
Q 008467          217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTN--------EKSKDVTTLDWNGEG-  287 (564)
Q Consensus       217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~V~~l~~s~~g-  287 (564)
                      .-|.++.|.-.|.+||||..+|.+.++.-.....      +......  ....+..        .....|..+.|.+++ 
T Consensus        26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~------~ey~~~t--~fqshepEFDYLkSleieEKinkIrw~~~~n   97 (433)
T KOG1354|consen   26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYK------GEYNFQT--EFQSHEPEFDYLKSLEIEEKINKIRWLDDGN   97 (433)
T ss_pred             cceeeEEeecccceEeecCCCCeEEEeecccccc------cceeeee--eeeccCcccchhhhhhhhhhhhhceecCCCC
Confidence            4478999999999999999999999997443211      0001110  0111100        122357888998865 


Q ss_pred             -CEEEEEeCCCeEEEEECCCceeEe------ecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEE-eeccc
Q 008467          288 -TLLATGSYDGQARIWSTNGDLKCT------LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF-EFHSG  359 (564)
Q Consensus       288 -~~l~sg~~dg~i~vw~~~~~~~~~------~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~-~~~~~  359 (564)
                       ..++..+.|.+|++|....+....      ..+..+.|++|+.-      +.+..|-.+...      +.+.+ ..|.-
T Consensus        98 ~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p------~~~~~~~~vea~------prRv~aNaHty  165 (433)
T KOG1354|consen   98 LAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLP------VEGRHDLEVEAS------PRRVYANAHTY  165 (433)
T ss_pred             ccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeece------eeccccceeeee------eeeecccccee
Confidence             467778899999999753211100      00011112222110      001111000000      00000 11222


Q ss_pred             CeEEEEcCCCceEEEEeCCCeEEEEEcCCC---ceeeEecCC-----CcceEEEEECCCC-CEEEEEeCCCcEEEEeCCC
Q 008467          360 PTLDVDWRNNVSFATSSTDNMIYVCKIGEN---RPIKTFAGH-----QGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQ  430 (564)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~---~~~~~~~~h-----~~~i~~v~~~~~~-~~las~s~dg~i~iwd~~~  430 (564)
                      .+.++....+..+..+..|-.|.+|.+.-.   -.+...+.+     +.-|++..|+|.. ++++-.|..|+||+-|++.
T Consensus       166 hiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~  245 (433)
T KOG1354|consen  166 HINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQ  245 (433)
T ss_pred             EeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechh
Confidence            233333333333444444444444443211   111112222     2347888999864 6778888999999999985


Q ss_pred             Ceeee----------------ecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC-CCeEEEEEeCCC-
Q 008467          431 DKYVH----------------DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE-LGKLLYSLNGHR-  492 (564)
Q Consensus       431 ~~~~~----------------~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~h~-  492 (564)
                      .....                -|..--..|..+.|++.|+         ++++-+. -+|++||+. ..+++.+..-|. 
T Consensus       246 ~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGr---------yilsRDy-ltvk~wD~nme~~pv~t~~vh~~  315 (433)
T KOG1354|consen  246 SALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGR---------YILSRDY-LTVKLWDLNMEAKPVETYPVHEY  315 (433)
T ss_pred             hhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCc---------EEEEecc-ceeEEEeccccCCcceEEeehHh
Confidence            32210                1112224577889998886         6666432 689999983 455565555442 


Q ss_pred             -----------CCE---EEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE-E-------------------Ee-c-----
Q 008467          493 -----------EPV---YSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK-T-------------------YT-G-----  532 (564)
Q Consensus       493 -----------~~i---~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~-~-------------------~~-~-----  532 (564)
                                 ..|   ..++||-++.+++|||....+++|++..|.... +                   .. +     
T Consensus       316 lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~  395 (433)
T KOG1354|consen  316 LRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRD  395 (433)
T ss_pred             HHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCcccc
Confidence                       223   457899999999999999999999966553210 0                   00 0     


Q ss_pred             ---------CCCEEEEEEccCCCEEEEEEcCCcEEEE
Q 008467          533 ---------NGGIFEVCWNKEGDKIAACFANHTVCVL  560 (564)
Q Consensus       533 ---------~~~i~~~~w~~~g~~la~~~~~~~v~v~  560 (564)
                               ...|+..+|+|..+.+|++..| .+.||
T Consensus       396 ~~~vd~ldf~kkilh~aWhp~en~ia~aatn-nlyif  431 (433)
T KOG1354|consen  396 EISVDALDFRKKILHTAWHPKENSIAVAATN-NLYIF  431 (433)
T ss_pred             ccccchhhhhhHHHhhccCCccceeeeeecC-ceEEe
Confidence                     0124568999999999998776 45554

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.48  E-value=3e-11  Score=123.99  Aligned_cols=212  Identities=18%  Similarity=0.258  Sum_probs=136.3

Q ss_pred             CCeEEEEECCCCCEEEEEeCC---CeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEE-EeeCCC--cEEEEECCCcc
Q 008467          276 KDVTTLDWNGEGTLLATGSYD---GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDK--TAIVWDVKTEE  349 (564)
Q Consensus       276 ~~V~~l~~s~~g~~l~sg~~d---g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~--~v~iwd~~~~~  349 (564)
                      ..+.+.+|+|||++|+.+...   ..|++|+..+.....+..+.+.+.+++|+|+|+.|+ +.+.++  .|.+||+.++.
T Consensus       190 ~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~  269 (417)
T TIGR02800       190 EPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ  269 (417)
T ss_pred             CceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC
Confidence            357788999999999987754   479999987654445555667778899999998776 444444  46666765543


Q ss_pred             eeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC-CC--cEEEE
Q 008467          350 WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DV--TAKIW  426 (564)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~-dg--~i~iw  426 (564)
                      ..                                          .+..+........|+|+|+.|+.++. ++  .|.+|
T Consensus       270 ~~------------------------------------------~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~  307 (417)
T TIGR02800       270 LT------------------------------------------RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMM  307 (417)
T ss_pred             EE------------------------------------------ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEE
Confidence            21                                          11122233345689999998877665 33  57777


Q ss_pred             eCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCC---eEEEEeCCCCeEEEEEeCCCCCEEEEEEcCC
Q 008467          427 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS---TVKLWDVELGKLLYSLNGHREPVYSLAFSPT  503 (564)
Q Consensus       427 d~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~h~~~i~~~~~spd  503 (564)
                      ++.+++. ..+..+...+....|+|++.         .++.++.++   .|.+||+.++... .+... ......+|+||
T Consensus       308 d~~~~~~-~~l~~~~~~~~~~~~spdg~---------~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spd  375 (417)
T TIGR02800       308 DADGGEV-RRLTFRGGYNASPSWSPDGD---------LIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPN  375 (417)
T ss_pred             ECCCCCE-EEeecCCCCccCeEECCCCC---------EEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCC
Confidence            8776653 33444455667788999875         455555554   7889998876542 23222 22355689999


Q ss_pred             CCEEEEEeCCC---cEEEEeCCCCeEEEEEec-CCCEEEEEEc
Q 008467          504 GEYLASGSLDK---SMHIWSLKEGKIVKTYTG-NGGIFEVCWN  542 (564)
Q Consensus       504 g~~lasgs~dg---~i~iw~~~~~~~~~~~~~-~~~i~~~~w~  542 (564)
                      |++|+.++.++   .+.+.+.. |+....+.. .+.+..++|+
T Consensus       376 g~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~g~~~~~~ws  417 (417)
T TIGR02800       376 GRMILYATTRGGRGVLGLVSTD-GRFRARLPLGNGDVREPAWS  417 (417)
T ss_pred             CCEEEEEEeCCCcEEEEEEECC-CceeeECCCCCCCcCCCCCC
Confidence            99998777654   45555543 444444432 3445666664

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.47  E-value=8.2e-12  Score=131.39  Aligned_cols=252  Identities=17%  Similarity=0.261  Sum_probs=175.0

Q ss_pred             EECCCceeEeecCCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCcc-----eeE--EEeecccCeEEEEc-CCCceE
Q 008467          302 WSTNGDLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEE-----WKQ--QFEFHSGPTLDVDW-RNNVSF  372 (564)
Q Consensus       302 w~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~-----~~~--~~~~~~~~~~~~~~-~~~~~~  372 (564)
                      |+..|.++..+..|...|..++.++.. .+|+|||.||+|++||++...     ...  ++......+..+.. .+...|
T Consensus      1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred             CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence            888899999999999999998887665 899999999999999986422     222  23333445555554 355678


Q ss_pred             EEEeCCCeEEEEEcCCCc-------eeeEecCCC-c-ceEEEEECC-CCC-EEEEEeCCCcEEEEeCCCCeeeeecc--c
Q 008467          373 ATSSTDNMIYVCKIGENR-------PIKTFAGHQ-G-EVNCVKWDP-TGS-LLASCSDDVTAKIWNMKQDKYVHDLR--E  439 (564)
Q Consensus       373 ~~~~~d~~i~~~~~~~~~-------~~~~~~~h~-~-~i~~v~~~~-~~~-~las~s~dg~i~iwd~~~~~~~~~~~--~  439 (564)
                      |.++.||.|.+.+++...       ..+....+. + .|.+-+|.. ++. .|+.+..-+.|..||.+.......++  .
T Consensus      1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~ 1193 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL 1193 (1431)
T ss_pred             EEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc
Confidence            889999999999987621       111111111 2 233334432 233 78888899999999998765544333  3


Q ss_pred             ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEe-CCCCCEEEEEEcCCC---CEEEEEe--CC
Q 008467          440 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN-GHREPVYSLAFSPTG---EYLASGS--LD  513 (564)
Q Consensus       440 ~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~i~~~~~spdg---~~lasgs--~d  513 (564)
                      ..+.|++++.+|.+.         +++.|...|.+-+||++-+..+.+.. ++..+|..+..+|--   .+.++++  ..
T Consensus      1194 ~hG~vTSi~idp~~~---------WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ 1264 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCN---------WLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSN 1264 (1431)
T ss_pred             cccceeEEEecCCce---------EEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCC
Confidence            457899999998764         79999999999999999888876653 355788888877643   4555554  46


Q ss_pred             CcEEEEeCCCCeEEEEEecCCC--------------------EEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467          514 KSMHIWSLKEGKIVKTYTGNGG--------------------IFEVCWNKEGDKIAACFANHTVCVLDF  562 (564)
Q Consensus       514 g~i~iw~~~~~~~~~~~~~~~~--------------------i~~~~w~~~g~~la~~~~~~~v~v~~~  562 (564)
                      +.|.+|+..+|..-.++-...+                    ....++...+..+.+|+.|..|+.||.
T Consensus      1265 nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1265 NEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred             CceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccC
Confidence            7899999999865444422100                    112334344557778888889998885

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=2.6e-11  Score=123.32  Aligned_cols=222  Identities=17%  Similarity=0.156  Sum_probs=137.7

Q ss_pred             CeEEEEECCCCCEE---EEEeCCC--eEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeC-CC----cEEEEECC
Q 008467          277 DVTTLDWNGEGTLL---ATGSYDG--QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC-DK----TAIVWDVK  346 (564)
Q Consensus       277 ~V~~l~~s~~g~~l---~sg~~dg--~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-D~----~v~iwd~~  346 (564)
                      .+.+-.|||||+.+   .+...+|  .|.+.+..+.....+....+.....+|+|||++|+..+. +|    .+.+|++.
T Consensus       186 ~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~  265 (428)
T PRK01029        186 LSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLE  265 (428)
T ss_pred             CcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecc
Confidence            34566899999752   2444444  466667766555555555666677899999998876542 22    12223332


Q ss_pred             CcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEe-CCCcEEE
Q 008467          347 TEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS-DDVTAKI  425 (564)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s-~dg~i~i  425 (564)
                      .+.                                      .+.+.+...++.+.....+|+|||+.|+..+ .+|...|
T Consensus       266 ~g~--------------------------------------~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~l  307 (428)
T PRK01029        266 TGA--------------------------------------IGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRI  307 (428)
T ss_pred             cCC--------------------------------------CCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceE
Confidence            210                                      0111122222223345679999999877666 4676666


Q ss_pred             EeC--CC-CeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC--CeEEEEeCCCCeEEEEEeCCCCCEEEEEE
Q 008467          426 WNM--KQ-DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD--STVKLWDVELGKLLYSLNGHREPVYSLAF  500 (564)
Q Consensus       426 wd~--~~-~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d--g~i~iwd~~~~~~~~~~~~h~~~i~~~~~  500 (564)
                      |.+  .. +.....+..+...+....|+|+|.        .++.++..+  ..|.+||+.+++.. .+......+....|
T Consensus       308 y~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~--------~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~w  378 (428)
T PRK01029        308 YIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGK--------KIAFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSW  378 (428)
T ss_pred             EEEECcccccceEEeccCCCCccceeECCCCC--------EEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEE
Confidence            653  22 222334444455667889999985        233333332  47999999888754 33333345678999


Q ss_pred             cCCCCEEEEEeC---CCcEEEEeCCCCeEEEEEecCCCEEEEEEccCC
Q 008467          501 SPTGEYLASGSL---DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEG  545 (564)
Q Consensus       501 spdg~~lasgs~---dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g  545 (564)
                      +|||++|+..+.   ...|.+|++.+++........+.+...+|+|-.
T Consensus       379 SpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        379 AIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             CCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecCCC
Confidence            999998875433   357899999888766666566667889999864

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.46  E-value=3e-12  Score=132.85  Aligned_cols=221  Identities=18%  Similarity=0.272  Sum_probs=163.8

Q ss_pred             CEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCe-----E
Q 008467          288 TLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT-----L  362 (564)
Q Consensus       288 ~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~-----~  362 (564)
                      .+++++..-+.+..-..+......+.   .-|+...+.-....++.+..++.+.+||...+.............     .
T Consensus        62 ~~~v~~~~~~~v~~~~~~~~~~~~~s---~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~  138 (967)
T KOG0974|consen   62 GKIVTCAKSDEVYVKEASNQIIERFS---DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLI  138 (967)
T ss_pred             ceEEEEEeecceeecchhhhhhhhcc---ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEE
Confidence            34555554444443333222222222   334445556667789999999999999987765544333222111     1


Q ss_pred             EEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeee-eccccc
Q 008467          363 DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH-DLREHS  441 (564)
Q Consensus       363 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~-~~~~~~  441 (564)
                      ...-.....+++++.-+.|.+|+.....+-..+.||.+.|-.+.|+-||.+++|+|+|.++|+|++.+.+... ...+|+
T Consensus       139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHs  218 (967)
T KOG0974|consen  139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHS  218 (967)
T ss_pred             EeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccc
Confidence            1122344567788888999999987544433688999999999999999999999999999999999887765 566899


Q ss_pred             ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCC-CCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008467          442 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR-EPVYSLAFSPTGEYLASGSLDKSMHIWS  520 (564)
Q Consensus       442 ~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-~~i~~~~~spdg~~lasgs~dg~i~iw~  520 (564)
                      ..+..+++.|.           .++|++.|.+.++|+.. +..+..+.+|. ..|..++..++...++|++.|+.+++|+
T Consensus       219 aRvw~~~~~~n-----------~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~  286 (967)
T KOG0974|consen  219 ARVWACCFLPN-----------RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD  286 (967)
T ss_pred             ceeEEEEeccc-----------eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence            99999999885           48999999999999765 56666777775 5799999999999999999999999999


Q ss_pred             CCC
Q 008467          521 LKE  523 (564)
Q Consensus       521 ~~~  523 (564)
                      +..
T Consensus       287 l~~  289 (967)
T KOG0974|consen  287 LNG  289 (967)
T ss_pred             hhc
Confidence            865

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=5.3e-11  Score=122.41  Aligned_cols=204  Identities=16%  Similarity=0.176  Sum_probs=133.5

Q ss_pred             eEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCC---CcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEE
Q 008467          298 QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD---KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFAT  374 (564)
Q Consensus       298 ~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (564)
                      .|.++|.+|.....+..+..++...+|+|+|++|+..+.+   ..|.+||+.+++...                      
T Consensus       180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----------------------  237 (430)
T PRK00178        180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----------------------  237 (430)
T ss_pred             EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----------------------
Confidence            4777787776666666778889999999999998776543   257777776654221                      


Q ss_pred             EeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEE-EEeCCC--cEEEEeCCCCeeeeecccccccEEEEEEcc
Q 008467          375 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDV--TAKIWNMKQDKYVHDLREHSKEIYTIRWSP  451 (564)
Q Consensus       375 ~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~la-s~s~dg--~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p  451 (564)
                                          +....+.+...+|+|||+.|+ +.+.+|  .|.+||+.++... .+..+........|+|
T Consensus       238 --------------------l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~sp  296 (430)
T PRK00178        238 --------------------ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGK  296 (430)
T ss_pred             --------------------ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECC
Confidence                                111112334588999999876 455555  5777898877543 3555555566778999


Q ss_pred             CCCCCCCCCCcEEEEEEeCCC--eEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-C--cEEEEeCCCCeE
Q 008467          452 TGSGTNNPNQQLILASASFDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD-K--SMHIWSLKEGKI  526 (564)
Q Consensus       452 ~~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~d-g--~i~iw~~~~~~~  526 (564)
                      ++.        .++.+...+|  .|.++|+.+++.. .+..........+|||||++|+..+.+ +  .|.+||+.+++.
T Consensus       297 Dg~--------~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~  367 (430)
T PRK00178        297 DGR--------TLYFTSDRGGKPQIYKVNVNGGRAE-RVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV  367 (430)
T ss_pred             CCC--------EEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE
Confidence            875        2444444443  5777788777643 222122233457899999999877643 3  588899988765


Q ss_pred             EEEEecCCCEEEEEEccCCCEEEEEEcC
Q 008467          527 VKTYTGNGGIFEVCWNKEGDKIAACFAN  554 (564)
Q Consensus       527 ~~~~~~~~~i~~~~w~~~g~~la~~~~~  554 (564)
                      .. +.........+|+|+|+.|+.+...
T Consensus       368 ~~-lt~~~~~~~p~~spdg~~i~~~~~~  394 (430)
T PRK00178        368 RI-LTDTSLDESPSVAPNGTMLIYATRQ  394 (430)
T ss_pred             EE-ccCCCCCCCceECCCCCEEEEEEec
Confidence            33 3322223356899999999877653

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.44  E-value=3.9e-11  Score=116.79  Aligned_cols=279  Identities=17%  Similarity=0.227  Sum_probs=195.8

Q ss_pred             CccceEEEEECCCCCE-EEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEE
Q 008467          215 HTSEVCACAWSPAGSL-LASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG  293 (564)
Q Consensus       215 h~~~V~~~~~sp~~~~-lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg  293 (564)
                      |....+.+..+|||+| ||||..--.|++||+.+-.              ++. ..+.  .+..|...-.+.|-..++.-
T Consensus        50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS--------------LKF-ERhl--Dae~V~feiLsDD~SK~v~L  112 (703)
T KOG2321|consen   50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS--------------LKF-ERHL--DAEVVDFEILSDDYSKSVFL  112 (703)
T ss_pred             CccccceeEecCCCcEEEEecccCCceEEEEcccce--------------eee-eecc--cccceeEEEeccchhhheEe
Confidence            4455677899999985 6777788999999986421              111 1111  12345555556666666666


Q ss_pred             eCCCeEEEEECCCceeE-eecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCc-e
Q 008467          294 SYDGQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV-S  371 (564)
Q Consensus       294 ~~dg~i~vw~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~  371 (564)
                      -.|..|-+-...|.-.. .++   ..-..++++.-.--|+.++....|.-.++..|.++..|....+.+..+...+-. .
T Consensus       113 ~~DR~IefHak~G~hy~~RIP---~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgL  189 (703)
T KOG2321|consen  113 QNDRTIEFHAKYGRHYRTRIP---KFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGL  189 (703)
T ss_pred             ecCceeeehhhcCeeeeeecC---cCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccce
Confidence            67777777665543221 111   222445665444446666666788889999999999998888887777765544 4


Q ss_pred             EEEEeCCCeEEEEEcCCCceeeEec------CCCc-----ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccc
Q 008467          372 FATSSTDNMIYVCKIGENRPIKTFA------GHQG-----EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH  440 (564)
Q Consensus       372 ~~~~~~d~~i~~~~~~~~~~~~~~~------~h~~-----~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~  440 (564)
                      +++++.+|.+-.||......+..+.      .|.+     .|+++.|+.+|-.++.|+.+|.+.|||+++.+++.. +.|
T Consensus       190 la~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~-kdh  268 (703)
T KOG2321|consen  190 LACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV-KDH  268 (703)
T ss_pred             EEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceee-ccc
Confidence            5555669999999988765554442      2323     499999999999999999999999999999887643 334


Q ss_pred             --cccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 008467          441 --SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHI  518 (564)
Q Consensus       441 --~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~i  518 (564)
                        .-+|..+.|.+.+.       +..++|. ....++|||-.+|+....+.. ...++.+++-|++-++.+|-.++.+..
T Consensus       269 ~~e~pi~~l~~~~~~~-------q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~  339 (703)
T KOG2321|consen  269 GYELPIKKLDWQDTDQ-------QNKVVSM-DKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMHT  339 (703)
T ss_pred             CCccceeeecccccCC-------CceEEec-chHHhhhcccccCCceeeccc-cCCcCceeeecCCceEEEecCCCccee
Confidence              45788999987632       2245554 346799999999998877764 445999999999999999998888777


Q ss_pred             EeCCC
Q 008467          519 WSLKE  523 (564)
Q Consensus       519 w~~~~  523 (564)
                      |=+..
T Consensus       340 yyiP~  344 (703)
T KOG2321|consen  340 YYIPS  344 (703)
T ss_pred             EEccc
Confidence            76553

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.44  E-value=6.5e-11  Score=120.41  Aligned_cols=216  Identities=16%  Similarity=0.180  Sum_probs=131.0

Q ss_pred             CeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEE---EEeeCCC--cEEEEECCCcceeEEEeecccCeEEEEcCCCce
Q 008467          297 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYL---LTGSCDK--TAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS  371 (564)
Q Consensus       297 g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l---~s~s~D~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (564)
                      ..|.+.|.+|.....+......+.+-+|+|+|+.+   ++...++  .|.+.++.+++..                    
T Consensus       165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~--------------------  224 (428)
T PRK01029        165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK--------------------  224 (428)
T ss_pred             ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce--------------------
Confidence            35666777776555566666677788999999752   2333333  3444455544311                    


Q ss_pred             EEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC-CC----cEEEEeCCCC---eeeeeccccccc
Q 008467          372 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DV----TAKIWNMKQD---KYVHDLREHSKE  443 (564)
Q Consensus       372 ~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~-dg----~i~iwd~~~~---~~~~~~~~~~~~  443 (564)
                                         .+..+.   +.....+|+|||+.||..++ +|    .+.+|++..+   ........+...
T Consensus       225 -------------------~lt~~~---g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~  282 (428)
T PRK01029        225 -------------------KILALQ---GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGT  282 (428)
T ss_pred             -------------------EeecCC---CCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCC
Confidence                               111122   22335789999988876553 23    3445776542   222222222233


Q ss_pred             EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEe--CCC-CeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC---CcEE
Q 008467          444 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWD--VEL-GKLLYSLNGHREPVYSLAFSPTGEYLASGSLD---KSMH  517 (564)
Q Consensus       444 i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd--~~~-~~~~~~~~~h~~~i~~~~~spdg~~lasgs~d---g~i~  517 (564)
                      .....|+|+|.        .++.+...+|...||.  +.. +.....+..+...+...+|||||++|+..+.+   ..|.
T Consensus       283 ~~~p~wSPDG~--------~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~  354 (428)
T PRK01029        283 QGNPSFSPDGT--------RLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQIC  354 (428)
T ss_pred             cCCeEECCCCC--------EEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEE
Confidence            45679999886        2344444567555554  432 23344455455567789999999999876543   4699


Q ss_pred             EEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcC---CcEEEEEe
Q 008467          518 IWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN---HTVCVLDF  562 (564)
Q Consensus       518 iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~---~~v~v~~~  562 (564)
                      +||+.+++..........+..++|+|||+.|+....+   ..+.++|+
T Consensus       355 v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl  402 (428)
T PRK01029        355 VYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISL  402 (428)
T ss_pred             EEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence            9999988765544444456789999999998865432   34566664

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.42  E-value=4.2e-11  Score=117.46  Aligned_cols=188  Identities=20%  Similarity=0.382  Sum_probs=153.4

Q ss_pred             CCCCCEEEEeeCCCcEEEEECCCcceeEEEeecc---cCeEEEEcC---------------------CCceEEEEeCCCe
Q 008467          325 NKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS---GPTLDVDWR---------------------NNVSFATSSTDNM  380 (564)
Q Consensus       325 ~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~---~~~~~~~~~---------------------~~~~~~~~~~d~~  380 (564)
                      .|...|++....||.+++||...++..+.|....   +...+..|.                     +...++.+...|.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            3456789999999999999999988877664322   222333331                     2235778888999


Q ss_pred             EEEEEcCCCceeeEec--CCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCC
Q 008467          381 IYVCKIGENRPIKTFA--GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNN  458 (564)
Q Consensus       381 i~~~~~~~~~~~~~~~--~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~  458 (564)
                      |..+++..++....+.  +|.+.|+++.++.+-..|.|++.|+.+..|+.+..+.++.+......+.+++.+|++.    
T Consensus        82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~----  157 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK----  157 (541)
T ss_pred             EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC----
Confidence            9999998887766665  6889999999999999999999999999999999999888888888899999999975    


Q ss_pred             CCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCC-----CCEE-EEEeCCCcEEEEeCCC
Q 008467          459 PNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPT-----GEYL-ASGSLDKSMHIWSLKE  523 (564)
Q Consensus       459 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spd-----g~~l-asgs~dg~i~iw~~~~  523 (564)
                           +|+++|  +.|++||+.+++.+.++.||.++|.+++|--+     |.++ .++..+.-|.+|-+..
T Consensus       158 -----~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  158 -----ILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             -----EEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence                 677776  78999999999999999999999999999877     5554 4556667788887754

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.42  E-value=1.2e-10  Score=113.08  Aligned_cols=314  Identities=16%  Similarity=0.296  Sum_probs=187.7

Q ss_pred             EEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC---
Q 008467          220 CACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD---  296 (564)
Q Consensus       220 ~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d---  296 (564)
                      +-+.|||-|++|+|--.-| |.+|-=.+-.                ...   .-....|.-++|||..++|+|=+..   
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~----------------r~~---RF~Hp~Vq~idfSP~EkYLVT~s~~p~~  273 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGESFD----------------RIQ---RFYHPGVQFIDFSPNEKYLVTYSPEPII  273 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCccHH----------------HHH---hccCCCceeeecCCccceEEEecCCccc
Confidence            4578999999999976655 5678421100                000   0113468899999999999987642   


Q ss_pred             --------CeEEEEECC-CceeEeecC--CCCCEEE-EEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEE
Q 008467          297 --------GQARIWSTN-GDLKCTLSK--HKGPIFS-LKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV  364 (564)
Q Consensus       297 --------g~i~vw~~~-~~~~~~~~~--h~~~V~~-l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~  364 (564)
                              ..++|||.. |.++..+..  ...+++. .+||.++++++.... .+|.||+..+..+...-...-..+.++
T Consensus       274 ~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~F  352 (698)
T KOG2314|consen  274 VEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDF  352 (698)
T ss_pred             cCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCc
Confidence                    478999964 566666655  2333333 589999999987666 578898866544333222233345566


Q ss_pred             EcCCCceEEE---EeCC---CeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEe----------CCCcEEEEeC
Q 008467          365 DWRNNVSFAT---SSTD---NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS----------DDVTAKIWNM  428 (564)
Q Consensus       365 ~~~~~~~~~~---~~~d---~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s----------~dg~i~iwd~  428 (564)
                      .|.+...+++   ...+   ..+.+..+...+.+++-.-|+-.=..+-|-.+|.+|+.--          .=..+.|+.+
T Consensus       353 swsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfri  432 (698)
T KOG2314|consen  353 SWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRI  432 (698)
T ss_pred             ccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEe
Confidence            6765433221   1111   1233344444444433322222222355666666664321          1123556666


Q ss_pred             CCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeC-CCeEEEEeCCC-C---eEEEEEeCCCCCEEEEEEcCC
Q 008467          429 KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF-DSTVKLWDVEL-G---KLLYSLNGHREPVYSLAFSPT  503 (564)
Q Consensus       429 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~-dg~i~iwd~~~-~---~~~~~~~~h~~~i~~~~~spd  503 (564)
                      +..............|...+|-|.|.       +..+++|.. -.++.+|.+++ +   +++..+..  ...+.+.|||.
T Consensus       433 reKdIpve~velke~vi~FaWEP~gd-------kF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPk  503 (698)
T KOG2314|consen  433 REKDIPVEVVELKESVIAFAWEPHGD-------KFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPK  503 (698)
T ss_pred             eccCCCceeeecchheeeeeeccCCC-------eEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCC
Confidence            55443323333456788999999885       234444432 35788888773 2   22333332  45688999999


Q ss_pred             CCEEEEE---eCCCcEEEEeCCCCeEEEE-EecCCCEEEEEEccCCCEEEEEEcCCc------EEEEEee
Q 008467          504 GEYLASG---SLDKSMHIWSLKEGKIVKT-YTGNGGIFEVCWNKEGDKIAACFANHT------VCVLDFR  563 (564)
Q Consensus       504 g~~lasg---s~dg~i~iw~~~~~~~~~~-~~~~~~i~~~~w~~~g~~la~~~~~~~------v~v~~~~  563 (564)
                      |++++.+   |..|.+.++|..-..+..+ ...+...+.+.|+|.|+++++|+....      -.+|+|+
T Consensus       504 G~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq  573 (698)
T KOG2314|consen  504 GRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ  573 (698)
T ss_pred             CcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence            9999875   4578899999874332222 123445678999999999999987543      3566664

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.41  E-value=4.3e-11  Score=111.47  Aligned_cols=238  Identities=17%  Similarity=0.268  Sum_probs=164.9

Q ss_pred             CCEEEEEeCCCCC--EEEEeeCCCcEEEEECCCcceeEEE------eecccCeEEEEcCCCceEEEEeCCCeEEEEEcCC
Q 008467          317 GPIFSLKWNKKGD--YLLTGSCDKTAIVWDVKTEEWKQQF------EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE  388 (564)
Q Consensus       317 ~~V~~l~~~~~~~--~l~s~s~D~~v~iwd~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~  388 (564)
                      ..|.++.|..+++  .|+.++.|..+...+.....+....      .+...++..+.. .+..+++|-.+|.+.+|....
T Consensus        56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~-~dg~Litc~~sG~l~~~~~k~  134 (412)
T KOG3881|consen   56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKL-ADGTLITCVSSGNLQVRHDKS  134 (412)
T ss_pred             hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhh-cCCEEEEEecCCcEEEEeccC
Confidence            3455566654443  3444446666666655544433332      122223333222 345678888999999998863


Q ss_pred             C----ceeeEecCCCcceEEEEECCCC-CEEEEEeCC--CcEEEEeCCCCeeeeeccccc---------ccEEEEEEccC
Q 008467          389 N----RPIKTFAGHQGEVNCVKWDPTG-SLLASCSDD--VTAKIWNMKQDKYVHDLREHS---------KEIYTIRWSPT  452 (564)
Q Consensus       389 ~----~~~~~~~~h~~~i~~v~~~~~~-~~las~s~d--g~i~iwd~~~~~~~~~~~~~~---------~~i~~i~~~p~  452 (564)
                      +    .+...+..+ ..+..+.-++.. .++|+|+..  ..++|||+.+.+.+.+-+.-.         -.++.+.|-|.
T Consensus       135 ~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g  213 (412)
T KOG3881|consen  135 GDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEG  213 (412)
T ss_pred             CccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCC
Confidence            2    233333333 234445545544 456779998  889999998886554432211         13456666654


Q ss_pred             CCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-EEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE-E
Q 008467          453 GSGTNNPNQQLILASASFDSTVKLWDVELGK-LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKT-Y  530 (564)
Q Consensus       453 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~-~  530 (564)
                      ..       ...||++..-+.||+||.+.++ ++..+.--..+|+++...|+|++|.+|..-|.+..||.+.+++... +
T Consensus       214 ~~-------~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~  286 (412)
T KOG3881|consen  214 SP-------NYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGL  286 (412)
T ss_pred             CC-------CceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeecccc
Confidence            21       3479999999999999999764 5677776678999999999999999999999999999999998776 5


Q ss_pred             ec-CCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          531 TG-NGGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       531 ~~-~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      .+ .++|.++.-+|.+.+||.|+-|..|+|+|++
T Consensus       287 kg~tGsirsih~hp~~~~las~GLDRyvRIhD~k  320 (412)
T KOG3881|consen  287 KGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIK  320 (412)
T ss_pred             CCccCCcceEEEcCCCceEEeeccceeEEEeecc
Confidence            54 5679999999999999999999999999986

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=1.2e-10  Score=119.44  Aligned_cols=204  Identities=17%  Similarity=0.212  Sum_probs=129.9

Q ss_pred             eEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCC-C--cEEEEECCCcceeEEEeecccCeEEEEcCCCceEEE
Q 008467          298 QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD-K--TAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFAT  374 (564)
Q Consensus       298 ~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D-~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (564)
                      .+.++|.+|.....+..+..++.+..|+|+|+.|+..+.+ +  .|.+||+.+++...                      
T Consensus       199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----------------------  256 (448)
T PRK04792        199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----------------------  256 (448)
T ss_pred             EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----------------------
Confidence            5667787776555666778889999999999998866543 2  46677776654211                      


Q ss_pred             EeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEE-EeCCCc--EEEEeCCCCeeeeecccccccEEEEEEcc
Q 008467          375 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLAS-CSDDVT--AKIWNMKQDKYVHDLREHSKEIYTIRWSP  451 (564)
Q Consensus       375 ~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las-~s~dg~--i~iwd~~~~~~~~~~~~~~~~i~~i~~~p  451 (564)
                                       +..+.+   .....+|+|||+.|+. .+.+|.  |.+||+.++.. ..+..+........|+|
T Consensus       257 -----------------lt~~~g---~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSp  315 (448)
T PRK04792        257 -----------------VTSFPG---INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHP  315 (448)
T ss_pred             -----------------ecCCCC---CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECC
Confidence                             111111   2235789999997764 566675  66778876654 34444555567789999


Q ss_pred             CCCCCCCCCCcEEEEEEeCCC--eEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC-CC--cEEEEeCCCCeE
Q 008467          452 TGSGTNNPNQQLILASASFDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL-DK--SMHIWSLKEGKI  526 (564)
Q Consensus       452 ~~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~-dg--~i~iw~~~~~~~  526 (564)
                      ++.        .++++...++  .|.++|+.+++.. .+..........+|+|||++|+..+. ++  .|.++|+.+++.
T Consensus       316 DG~--------~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~  386 (448)
T PRK04792        316 DGK--------SLIFTSERGGKPQIYRVNLASGKVS-RLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM  386 (448)
T ss_pred             CCC--------EEEEEECCCCCceEEEEECCCCCEE-EEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe
Confidence            875        2444444444  4666677766643 23222222345789999999987655 33  466678887765


Q ss_pred             EEEEecCCCEEEEEEccCCCEEEEEEcC
Q 008467          527 VKTYTGNGGIFEVCWNKEGDKIAACFAN  554 (564)
Q Consensus       527 ~~~~~~~~~i~~~~w~~~g~~la~~~~~  554 (564)
                      .. +.........+|+|+|+.|+....+
T Consensus       387 ~~-lt~~~~d~~ps~spdG~~I~~~~~~  413 (448)
T PRK04792        387 QV-LTSTRLDESPSVAPNGTMVIYSTTY  413 (448)
T ss_pred             EE-ccCCCCCCCceECCCCCEEEEEEec
Confidence            33 2222223356899999998876654

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=9.5e-11  Score=120.56  Aligned_cols=215  Identities=16%  Similarity=0.192  Sum_probs=133.0

Q ss_pred             CCeEEEEECCCCCEEEEEeCC---CeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEE-EeeCCC--cEEEEECCCcc
Q 008467          276 KDVTTLDWNGEGTLLATGSYD---GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDK--TAIVWDVKTEE  349 (564)
Q Consensus       276 ~~V~~l~~s~~g~~l~sg~~d---g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~--~v~iwd~~~~~  349 (564)
                      ..+....|||||+.|+..+.+   ..|.+|+..+.....+....+.+....|+|+|+.|+ +.+.++  .|.+||+.++.
T Consensus       199 ~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~  278 (430)
T PRK00178        199 EPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ  278 (430)
T ss_pred             CceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence            468889999999999877654   368888987654444544555566789999999876 444444  46666766543


Q ss_pred             eeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC-CC--cEEEE
Q 008467          350 WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DV--TAKIW  426 (564)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~-dg--~i~iw  426 (564)
                      ..                                          .+..+........|+|||+.|+..++ +|  .|.++
T Consensus       279 ~~------------------------------------------~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~  316 (430)
T PRK00178        279 LS------------------------------------------RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKV  316 (430)
T ss_pred             eE------------------------------------------EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEE
Confidence            21                                          12223333445789999998776664 33  46667


Q ss_pred             eCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCC--eEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCC
Q 008467          427 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPTG  504 (564)
Q Consensus       427 d~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg  504 (564)
                      ++.+++.. .+...........|+|++.        .++++...++  .|.+||+.+++.. .+.. ........|+|||
T Consensus       317 d~~~g~~~-~lt~~~~~~~~~~~Spdg~--------~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p~~spdg  385 (430)
T PRK00178        317 NVNGGRAE-RVTFVGNYNARPRLSADGK--------TLVMVHRQDGNFHVAAQDLQRGSVR-ILTD-TSLDESPSVAPNG  385 (430)
T ss_pred             ECCCCCEE-EeecCCCCccceEECCCCC--------EEEEEEccCCceEEEEEECCCCCEE-EccC-CCCCCCceECCCC
Confidence            77666532 2222222234567888875        2333333333  5888999877643 2321 2222356899999


Q ss_pred             CEEEEEeCC---CcEEEEeCCCCeEEEEEec-CCCEEEEEEccC
Q 008467          505 EYLASGSLD---KSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKE  544 (564)
Q Consensus       505 ~~lasgs~d---g~i~iw~~~~~~~~~~~~~-~~~i~~~~w~~~  544 (564)
                      ++|+..+.+   ..|.++++.. .....+.. .+.+...+|+|-
T Consensus       386 ~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        386 TMLIYATRQQGRGVLMLVSING-RVRLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             CEEEEEEecCCceEEEEEECCC-CceEECcCCCCCcCCCccCCC
Confidence            999876643   3577777753 33333333 345778889873

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.40  E-value=1.2e-10  Score=113.39  Aligned_cols=293  Identities=17%  Similarity=0.333  Sum_probs=182.7

Q ss_pred             ceEEEEECCCCCEEEEE-----ECCCc-----EEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC
Q 008467          218 EVCACAWSPAGSLLASG-----SGDST-----ARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG  287 (564)
Q Consensus       218 ~V~~~~~sp~~~~lasg-----s~D~~-----i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g  287 (564)
                      .++++.|||.|.+|.|=     ..|+.     +++|++.++.....          +..     ....+  .+..|+.|.
T Consensus        75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~----------~q~-----k~Q~~--W~~qfs~dE  137 (566)
T KOG2315|consen   75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQ----------IQK-----KMQNG--WVPQFSIDE  137 (566)
T ss_pred             eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhh----------eeh-----hhhcC--cccccccch
Confidence            67899999999998762     12332     44777665321100          000     00111  467888876


Q ss_pred             CEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCC--CEEEE-----eeCCCcEEEEECCCcceeEEE---eec
Q 008467          288 TLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKG--DYLLT-----GSCDKTAIVWDVKTEEWKQQF---EFH  357 (564)
Q Consensus       288 ~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~--~~l~s-----~s~D~~v~iwd~~~~~~~~~~---~~~  357 (564)
                      .+. .--..+.+.+|+..+.....-.-|...|..+.++|.+  ..+++     .+.-..|+||-..-....+..   .+.
T Consensus       138 sl~-arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF  216 (566)
T KOG2315|consen  138 SLA-ARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF  216 (566)
T ss_pred             hhh-hhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc
Confidence            543 3334578999998764333344467788888999873  23332     455678999976522211111   111


Q ss_pred             ccCeEEEEcCC--CceE--EEEeC---------CCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEE--eCCCc
Q 008467          358 SGPTLDVDWRN--NVSF--ATSST---------DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASC--SDDVT  422 (564)
Q Consensus       358 ~~~~~~~~~~~--~~~~--~~~~~---------d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~--s~dg~  422 (564)
                      ...-..+.|..  ...+  ++..-         ..++++..+........+ ...++|.++.|+|+|+-++.+  -.--+
T Consensus       217 kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAk  295 (566)
T KOG2315|consen  217 KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAK  295 (566)
T ss_pred             ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEEEecccce
Confidence            22334455642  2222  22222         335777777643333333 247899999999999876654  44668


Q ss_pred             EEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeC---CCeEEEEeCCCCeEEEEEeCCCCCEEEEE
Q 008467          423 AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF---DSTVKLWDVELGKLLYSLNGHREPVYSLA  499 (564)
Q Consensus       423 i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~h~~~i~~~~  499 (564)
                      +.|+|++ +.++..+  ..++-.++-|+|.|.         +|+.+++   -|.|-|||+.+.+++..+..-.  -+-..
T Consensus       296 vtifnlr-~~~v~df--~egpRN~~~fnp~g~---------ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~e  361 (566)
T KOG2315|consen  296 VTIFNLR-GKPVFDF--PEGPRNTAFFNPHGN---------IILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFE  361 (566)
T ss_pred             EEEEcCC-CCEeEeC--CCCCccceEECCCCC---------EEEEeecCCCCCceEEEeccchhhccccccCC--ceEEE
Confidence            8999976 4455554  346668889999885         4555554   4889999999988888776543  35578


Q ss_pred             EcCCCCEEEEEeC------CCcEEEEeCCCCeEEEEEecCCCEEEEEEccC
Q 008467          500 FSPTGEYLASGSL------DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKE  544 (564)
Q Consensus       500 ~spdg~~lasgs~------dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~  544 (564)
                      |+|||++++|++.      |+.++||+.. |.++....-....+.++|-|-
T Consensus       362 W~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~~~~f~sEL~qv~W~P~  411 (566)
T KOG2315|consen  362 WSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLHEKMFKSELLQVEWRPF  411 (566)
T ss_pred             EcCCCcEEEEEeccccEEecCCeEEEEec-CceeehhhhhHhHhheeeeec
Confidence            9999999998865      6789999984 666655433335778888864

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.39  E-value=8.8e-10  Score=109.30  Aligned_cols=267  Identities=16%  Similarity=0.178  Sum_probs=169.7

Q ss_pred             CEE-EEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEE
Q 008467          288 TLL-ATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD  365 (564)
Q Consensus       288 ~~l-~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~  365 (564)
                      +++ ++-..+|.|.+.|... +....+.....+-..+.|+|+|+++++++.|+.|.++|+.+++.+.++.....+ ..+.
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~-~~i~   84 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNP-RGIA   84 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEE-EEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCc-ceEE
Confidence            344 4455679999999764 455666654444455789999999999999999999999999988887665443 3444


Q ss_pred             cC--CCceEEEEeCCCeEEEEEcCCCceeeEecCC-------CcceEEEEECCCCCEEEEEeC-CCcEEEEeCCCCeeee
Q 008467          366 WR--NNVSFATSSTDNMIYVCKIGENRPIKTFAGH-------QGEVNCVKWDPTGSLLASCSD-DVTAKIWNMKQDKYVH  435 (564)
Q Consensus       366 ~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h-------~~~i~~v~~~~~~~~las~s~-dg~i~iwd~~~~~~~~  435 (564)
                      ..  ....++++...+.+.++|..+.++++.+...       ...+.++..+|....++..-. .+.|-+-|......+.
T Consensus        85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~  164 (369)
T PF02239_consen   85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK  164 (369)
T ss_dssp             E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred             EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc
Confidence            43  3445566778999999999998888876533       346778888888885555544 4777777866544332


Q ss_pred             -ecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEe----CCCCCEEEE-------EEc--
Q 008467          436 -DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN----GHREPVYSL-------AFS--  501 (564)
Q Consensus       436 -~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----~h~~~i~~~-------~~s--  501 (564)
                       .............|.|+++        +++++....+.|-++|..+++.+..+.    .|..++..+       .|.  
T Consensus       165 ~~~i~~g~~~~D~~~dpdgr--------y~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~  236 (369)
T PF02239_consen  165 VTTIKVGRFPHDGGFDPDGR--------YFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATS  236 (369)
T ss_dssp             EEEEE--TTEEEEEE-TTSS--------EEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEE
T ss_pred             eeeecccccccccccCcccc--------eeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeec
Confidence             2222344567788888775        466666778899999999998877653    233333332       122  


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEE----EcCCcEEEEEee
Q 008467          502 PTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAAC----FANHTVCVLDFR  563 (564)
Q Consensus       502 pdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~----~~~~~v~v~~~~  563 (564)
                      ..+.+.++.-....+.+|+..+.+.+++....++...+.-+|++++|.+.    ....+|+|+|.+
T Consensus       237 ~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~  302 (369)
T PF02239_consen  237 GLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKK  302 (369)
T ss_dssp             BSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECC
T ss_pred             cccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECc
Confidence            22333323222335778999999999999876666888999999999998    344789999875

...

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.37  E-value=1.9e-10  Score=112.86  Aligned_cols=208  Identities=17%  Similarity=0.252  Sum_probs=143.5

Q ss_pred             CCCCEEEEEECCCcEEEEeCCCCCCCCCCCC----CCceEEEEEeeccccccCCCCeEEEEE----CCCCCEEEEEeCCC
Q 008467          226 PAGSLLASGSGDSTARIWTIADGTSNGGAQN----GPLNVLVLKHVKGRTNEKSKDVTTLDW----NGEGTLLATGSYDG  297 (564)
Q Consensus       226 p~~~~lasgs~D~~i~iW~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~V~~l~~----s~~g~~l~sg~~dg  297 (564)
                      |...++|....||.+|||+...++.......    ...+...........  .....+++.|    +.+-..++-|...|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~--s~~k~~~~~~~~~~s~~t~~lvlgt~~g   80 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADY--SPMKWLSLEKAKKASLDTSMLVLGTPQG   80 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEecc--chHHHHhHHHHhhccCCceEEEeecCCc
Confidence            4567999999999999999876543211110    000000000000000  0000111111    23456788899999


Q ss_pred             eEEEEECC-CceeEee--cCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEE
Q 008467          298 QARIWSTN-GDLKCTL--SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFAT  374 (564)
Q Consensus       298 ~i~vw~~~-~~~~~~~--~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (564)
                      .|.+|+.. |++...+  .+|.++|.++.|+.+-..|.|++.|+.+..|+...+..+..                     
T Consensus        81 ~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~---------------------  139 (541)
T KOG4547|consen   81 SVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRI---------------------  139 (541)
T ss_pred             cEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeee---------------------
Confidence            99999976 4555444  47999999999999999999999999999999877543322                     


Q ss_pred             EeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCC
Q 008467          375 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS  454 (564)
Q Consensus       375 ~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~  454 (564)
                                          +.+....+.+++++|||+.++++|  +.|++||+++++.+..|.+|.++|.++.|...-.
T Consensus       140 --------------------~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~  197 (541)
T KOG4547|consen  140 --------------------WKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLID  197 (541)
T ss_pred             --------------------eccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEecc
Confidence                                223334567899999999998886  4899999999999999999999999999976511


Q ss_pred             CCCCCCCcEEEEEEeCCCeEEEEeCCC
Q 008467          455 GTNNPNQQLILASASFDSTVKLWDVEL  481 (564)
Q Consensus       455 ~~~~~~~~~~l~s~s~dg~i~iwd~~~  481 (564)
                         .....++|.+...+.-+.+|-++.
T Consensus       198 ---g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  198 ---GIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             ---ccccceeeeccccccceeEEEEEc
Confidence               112346788888888888997654

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.35  E-value=3.6e-11  Score=125.01  Aligned_cols=199  Identities=18%  Similarity=0.209  Sum_probs=155.7

Q ss_pred             cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC
Q 008467          217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD  296 (564)
Q Consensus       217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d  296 (564)
                      ..|+.+.+.-+.+.++.+..+..+-|||...+......+......             .....-+-.+++.-++++|+.-
T Consensus        88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~-------------l~~~~~~g~s~~~~~i~~gsv~  154 (967)
T KOG0974|consen   88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCT-------------LYSSLIIGDSAEELYIASGSVF  154 (967)
T ss_pred             ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEE-------------EEeEEEEeccCcEEEEEecccc
Confidence            445556777788889999999999999987654322211111000             0112233457777899999999


Q ss_pred             CeEEEEECCCceeE-eecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeE-EEeecccCeEEEEcCCCceEEE
Q 008467          297 GQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ-QFEFHSGPTLDVDWRNNVSFAT  374 (564)
Q Consensus       297 g~i~vw~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  374 (564)
                      +.|.+|......+. .+.+|.+.|+++.|+-+|.+++++|.|+++|+|++.+.+... ....|...+..+.+.++ .+++
T Consensus       155 ~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-~i~t  233 (967)
T KOG0974|consen  155 GEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-RIIT  233 (967)
T ss_pred             ccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-eeEE
Confidence            99999997644333 588999999999999999999999999999999999988766 55668888888888888 8999


Q ss_pred             EeCCCeEEEEEcCCCceeeEecCCCc-ceEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 008467          375 SSTDNMIYVCKIGENRPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDVTAKIWNMKQ  430 (564)
Q Consensus       375 ~~~d~~i~~~~~~~~~~~~~~~~h~~-~i~~v~~~~~~~~las~s~dg~i~iwd~~~  430 (564)
                      .+.|-+.++|+... ....++.+|.+ .|..++..++...++|++.|+.+++|++..
T Consensus       234 ~gedctcrvW~~~~-~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  234 VGEDCTCRVWGVNG-TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             eccceEEEEEeccc-ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            99999999996643 33447888876 589999999999999999999999999754

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.35  E-value=3.1e-08  Score=98.34  Aligned_cols=265  Identities=15%  Similarity=0.259  Sum_probs=163.7

Q ss_pred             EEEEeCC----CeEEEEECC---Ccee--EeecCCCCCEEEEEeCCCCCEEEEeeC----CCcEEEEECCCc--cee--E
Q 008467          290 LATGSYD----GQARIWSTN---GDLK--CTLSKHKGPIFSLKWNKKGDYLLTGSC----DKTAIVWDVKTE--EWK--Q  352 (564)
Q Consensus       290 l~sg~~d----g~i~vw~~~---~~~~--~~~~~h~~~V~~l~~~~~~~~l~s~s~----D~~v~iwd~~~~--~~~--~  352 (564)
                      ++.|++.    +.|.+|..+   +.+.  .... -......|.++|++++|++...    ++.|..|.+...  .+.  .
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~   80 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN   80 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence            4455555    678877652   2222  1121 2233456889999999998876    468988887653  332  2


Q ss_pred             EEeecccCeEEEEc--CCCceEEEEeCCCeEEEEEcCCCceee----Eec----------CCCcceEEEEECCCCCEEEE
Q 008467          353 QFEFHSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGENRPIK----TFA----------GHQGEVNCVKWDPTGSLLAS  416 (564)
Q Consensus       353 ~~~~~~~~~~~~~~--~~~~~~~~~~~d~~i~~~~~~~~~~~~----~~~----------~h~~~i~~v~~~~~~~~las  416 (564)
                      ...........+..  .....+++.-.++.+.++++.....+.    .+.          .-.....++.++|+++++++
T Consensus        81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v  160 (345)
T PF10282_consen   81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV  160 (345)
T ss_dssp             EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred             eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence            33322333334444  334455666679999999998742221    111          11234678999999998877


Q ss_pred             EeC-CCcEEEEeCCCCe--ee--eecc-cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC--CCeE--EE
Q 008467          417 CSD-DVTAKIWNMKQDK--YV--HDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE--LGKL--LY  486 (564)
Q Consensus       417 ~s~-dg~i~iwd~~~~~--~~--~~~~-~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~--~~~~--~~  486 (564)
                      +.. ...|.+|++....  ..  ..+. .....-..+.|+|++.        .+.++.-.+++|.++++.  .+..  +.
T Consensus       161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~--------~~Yv~~e~s~~v~v~~~~~~~g~~~~~~  232 (345)
T PF10282_consen  161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGK--------YAYVVNELSNTVSVFDYDPSDGSLTEIQ  232 (345)
T ss_dssp             EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSS--------EEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred             EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcC--------EEEEecCCCCcEEEEeecccCCceeEEE
Confidence            643 4579999887654  21  2222 2234457788988764        455667788999999987  4533  22


Q ss_pred             EEeCC------CCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCC--CCeE--EEEEecCC-CEEEEEEccCCCEEEEEE-c
Q 008467          487 SLNGH------REPVYSLAFSPTGEYLASGS-LDKSMHIWSLK--EGKI--VKTYTGNG-GIFEVCWNKEGDKIAACF-A  553 (564)
Q Consensus       487 ~~~~h------~~~i~~~~~spdg~~lasgs-~dg~i~iw~~~--~~~~--~~~~~~~~-~i~~~~w~~~g~~la~~~-~  553 (564)
                      .+...      ......|++||||++|.++. ..+.|.+|++.  +|++  +..+...+ ....++++|+|++|+++. .
T Consensus       233 ~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~  312 (345)
T PF10282_consen  233 TISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQD  312 (345)
T ss_dssp             EEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETT
T ss_pred             EeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecC
Confidence            22211      12578899999999987665 56789999993  3443  44444433 478999999999999876 4


Q ss_pred             CCcEEEEEee
Q 008467          554 NHTVCVLDFR  563 (564)
Q Consensus       554 ~~~v~v~~~~  563 (564)
                      ++.|.||++.
T Consensus       313 s~~v~vf~~d  322 (345)
T PF10282_consen  313 SNTVSVFDID  322 (345)
T ss_dssp             TTEEEEEEEE
T ss_pred             CCeEEEEEEe
Confidence            5689999874

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=2.9e-10  Score=116.61  Aligned_cols=214  Identities=16%  Similarity=0.223  Sum_probs=129.3

Q ss_pred             CCeEEEEECCCCCEEEEEeCC-C--eEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEE-eeCCCc--EEEEECCCcc
Q 008467          276 KDVTTLDWNGEGTLLATGSYD-G--QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLT-GSCDKT--AIVWDVKTEE  349 (564)
Q Consensus       276 ~~V~~l~~s~~g~~l~sg~~d-g--~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s-~s~D~~--v~iwd~~~~~  349 (564)
                      ..+.+..|||||+.|+..+.+ +  .|.+|+..+.....+....+......|+|+|+.|+. .+.++.  |.+||+.+++
T Consensus       218 ~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~  297 (448)
T PRK04792        218 EPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA  297 (448)
T ss_pred             CcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC
Confidence            457788999999998876543 3  577888765443334333344457899999998764 455554  5555655443


Q ss_pred             eeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC-CCc--EEEE
Q 008467          350 WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVT--AKIW  426 (564)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~-dg~--i~iw  426 (564)
                      ..                                          .+..+.......+|+|||+.|+..+. ++.  |.++
T Consensus       298 ~~------------------------------------------~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~  335 (448)
T PRK04792        298 LT------------------------------------------RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRV  335 (448)
T ss_pred             eE------------------------------------------ECccCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence            21                                          12223334456789999998776654 444  5556


Q ss_pred             eCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCC--eEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCC
Q 008467          427 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPTG  504 (564)
Q Consensus       427 d~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg  504 (564)
                      |+.+++.. .+...........|+|+|.        .++++...++  .|.++|+.+++.. .+... ......+|+|||
T Consensus       336 dl~~g~~~-~Lt~~g~~~~~~~~SpDG~--------~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG  404 (448)
T PRK04792        336 NLASGKVS-RLTFEGEQNLGGSITPDGR--------SMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNG  404 (448)
T ss_pred             ECCCCCEE-EEecCCCCCcCeeECCCCC--------EEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCC
Confidence            77666543 2222222234568888875        3444444445  4555788777643 23322 122345899999


Q ss_pred             CEEEEEeCC-C--cEEEEeCCCCeEEEEEec-CCCEEEEEEcc
Q 008467          505 EYLASGSLD-K--SMHIWSLKEGKIVKTYTG-NGGIFEVCWNK  543 (564)
Q Consensus       505 ~~lasgs~d-g--~i~iw~~~~~~~~~~~~~-~~~i~~~~w~~  543 (564)
                      ++|+..+.+ |  .+.+++. +|.....+.. .+.+...+|+|
T Consensus       405 ~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        405 TMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             CEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence            998765543 3  3777776 4555555543 34577889987

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.34  E-value=1.1e-10  Score=104.91  Aligned_cols=181  Identities=19%  Similarity=0.299  Sum_probs=133.2

Q ss_pred             EEEEeCCCeEEEEEcCCCceeeEecCCCc------ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCee--eeeccccccc
Q 008467          372 FATSSTDNMIYVCKIGENRPIKTFAGHQG------EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY--VHDLREHSKE  443 (564)
Q Consensus       372 ~~~~~~d~~i~~~~~~~~~~~~~~~~h~~------~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~--~~~~~~~~~~  443 (564)
                      ++.....|.|.++..........|++-..      ...++.|++.+..++++-.+|.+.+-+......  ++..+.|.-+
T Consensus        88 l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E  167 (339)
T KOG0280|consen   88 LLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFE  167 (339)
T ss_pred             eeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccccccee
Confidence            34455667777777665444334433221      245788999999999999999998666554443  3477889999


Q ss_pred             EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC-CCeEEEE-EeCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEe
Q 008467          444 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE-LGKLLYS-LNGHREPVYSLAFSP-TGEYLASGSLDKSMHIWS  520 (564)
Q Consensus       444 i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~-~~~h~~~i~~~~~sp-dg~~lasgs~dg~i~iw~  520 (564)
                      ++...|+-...        .++.+|+.|+.+..||++ .++.++. .+-|...|.+|.-|| .+.+|++|+.|-.|++||
T Consensus       168 ~Wta~f~~~~p--------nlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~D  239 (339)
T KOG0280|consen  168 AWTAKFSDKEP--------NLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLD  239 (339)
T ss_pred             eeeeecccCCC--------ceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeee
Confidence            99988875432        378999999999999999 4555655 566888999998886 478999999999999999


Q ss_pred             CCC-CeEEEEEecCCCEEEEEEccCC--CEEEEEEcCCcEEEEE
Q 008467          521 LKE-GKIVKTYTGNGGIFEVCWNKEG--DKIAACFANHTVCVLD  561 (564)
Q Consensus       521 ~~~-~~~~~~~~~~~~i~~~~w~~~g--~~la~~~~~~~v~v~~  561 (564)
                      .++ ++.+..-.-.++|+.+.|+|.-  ..||+|..+| ..|.+
T Consensus       240 tRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~  282 (339)
T KOG0280|consen  240 TRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-AKILD  282 (339)
T ss_pred             hhcccCccccCccccceEEEEecchhhhHHHHHHHhcC-ceEEE
Confidence            984 5666555556889999999964  4667776665 44444

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.34  E-value=4.9e-10  Score=108.88  Aligned_cols=274  Identities=18%  Similarity=0.297  Sum_probs=173.0

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCC-----------CcEEEEECC
Q 008467          278 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD-----------KTAIVWDVK  346 (564)
Q Consensus       278 V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D-----------~~v~iwd~~  346 (564)
                      -+-+.|||.|++|+|--.-| |.+|--..-....--.|++ |.-+.|||+.+||+|-|..           ..++|||+.
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~  290 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA  290 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence            46789999999999876654 6788543211111123554 6778999999999997642           579999999


Q ss_pred             CcceeEEEeecccC--e-EEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCC---
Q 008467          347 TEEWKQQFEFHSGP--T-LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD---  420 (564)
Q Consensus       347 ~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~d---  420 (564)
                      +|...+.|.....+  . .-+.|..+..|.+.-..+.|.++....-.++..-.-.-..|....|+|.+++||-=+..   
T Consensus       291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~  370 (698)
T KOG2314|consen  291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNN  370 (698)
T ss_pred             ccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccC
Confidence            99999888764333  2 23578888888777777888888765422221111112457778899999988754321   


Q ss_pred             --CcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEE----------EeCCCeEEEEeCCCCeEEEEE
Q 008467          421 --VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAS----------ASFDSTVKLWDVELGKLLYSL  488 (564)
Q Consensus       421 --g~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s----------~s~dg~i~iwd~~~~~~~~~~  488 (564)
                        ..+.+-.+.+++.+++-.-|+-.=..+.|...|.         +|+.          .+.-..+.|+.++........
T Consensus       371 ~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gd---------yLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~  441 (698)
T KOG2314|consen  371 IPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGD---------YLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV  441 (698)
T ss_pred             CcceEEEEecCccceeeeccceeeeccEEEeccCCc---------EEEEEEEeeccccccceEeeEEEEEeeccCCCcee
Confidence              2345555555555554444433334566766553         3332          111123445554432221111


Q ss_pred             eCCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEeCCC----CeEEEEEecCCCEEEEEEccCCCEEEEE---EcCCcEE
Q 008467          489 NGHREPVYSLAFSPTGEYLASGSL---DKSMHIWSLKE----GKIVKTYTGNGGIFEVCWNKEGDKIAAC---FANHTVC  558 (564)
Q Consensus       489 ~~h~~~i~~~~~spdg~~lasgs~---dg~i~iw~~~~----~~~~~~~~~~~~i~~~~w~~~g~~la~~---~~~~~v~  558 (564)
                      -.-..+|...+|-|.|..+++-+.   ..++.+|.+++    .++++.+.. .-.+.+.|+|.|..++++   +..|.+.
T Consensus       442 velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk-~~~N~vfwsPkG~fvvva~l~s~~g~l~  520 (698)
T KOG2314|consen  442 VELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK-KFANTVFWSPKGRFVVVAALVSRRGDLE  520 (698)
T ss_pred             eecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc-cccceEEEcCCCcEEEEEEecccccceE
Confidence            223467888999999988775443   35788998873    235555554 346789999999988866   4467888


Q ss_pred             EEEee
Q 008467          559 VLDFR  563 (564)
Q Consensus       559 v~~~~  563 (564)
                      .+|..
T Consensus       521 F~D~~  525 (698)
T KOG2314|consen  521 FYDTD  525 (698)
T ss_pred             EEecc
Confidence            88753

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.33  E-value=8e-09  Score=113.58  Aligned_cols=323  Identities=19%  Similarity=0.360  Sum_probs=190.7

Q ss_pred             ccceEEEEECCCCCEEEEEECCCcEEEEeCC----CCCCCCC---CCCCCceE-------E----EEE-------ee---
Q 008467          216 TSEVCACAWSPAGSLLASGSGDSTARIWTIA----DGTSNGG---AQNGPLNV-------L----VLK-------HV---  267 (564)
Q Consensus       216 ~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~----~~~~~~~---~~~~~~~~-------~----~~~-------~~---  267 (564)
                      ..+|.|++||||+.+||...+++++.+-+-.    .......   ....++++       .    .-+       ..   
T Consensus       120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~  199 (928)
T PF04762_consen  120 DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP  199 (928)
T ss_pred             cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence            4689999999999999999999888765321    0000000   00000000       0    000       00   


Q ss_pred             ---ccccccCCCCeEEEEECCCCCEEEEEeC---C---CeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeC--
Q 008467          268 ---KGRTNEKSKDVTTLDWNGEGTLLATGSY---D---GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC--  336 (564)
Q Consensus       268 ---~~~~~~~~~~V~~l~~s~~g~~l~sg~~---d---g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~--  336 (564)
                         .+... ....-..++|-.||.++|+.+.   .   ..+|||+.+|.+..+...-.+--.+++|.|.|+.|++...  
T Consensus       200 ~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~  278 (928)
T PF04762_consen  200 KVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLP  278 (928)
T ss_pred             ccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcC
Confidence               01111 2334568899999999999875   2   5899999998876655444444457899999999988764  


Q ss_pred             -CCcEEEEECCCcceeEEEeec----ccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCc----eeeEecCCCcceEEEEE
Q 008467          337 -DKTAIVWDVKTEEWKQQFEFH----SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR----PIKTFAGHQGEVNCVKW  407 (564)
Q Consensus       337 -D~~v~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~----~~~~~~~h~~~i~~v~~  407 (564)
                       ...|.+|. ++|-....|...    ...+..+.|..+..+.+......|.+|..++-.    ....|. ....+..+.|
T Consensus       279 ~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~-~~~~~~~~~W  356 (928)
T PF04762_consen  279 DRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFS-SSESVNFVKW  356 (928)
T ss_pred             CCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEcc-CCCCCCceEE
Confidence             34566665 445444455443    456889999877665544445559999887642    111222 2233555999


Q ss_pred             CCCCC-EEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE--
Q 008467          408 DPTGS-LLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL--  484 (564)
Q Consensus       408 ~~~~~-~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--  484 (564)
                      +|... .|...+.+|.+..+++.               +.+..++..    .|++.-.+++-. ..++++-.++....  
T Consensus       357 dpe~p~~L~v~t~~g~~~~~~~~---------------~~v~~s~~~----~~~D~g~vaVID-G~~lllTpf~~a~VPP  416 (928)
T PF04762_consen  357 DPEKPLRLHVLTSNGQYEIYDFA---------------WDVSRSPGS----SPNDNGTVAVID-GNKLLLTPFRRAVVPP  416 (928)
T ss_pred             CCCCCCEEEEEecCCcEEEEEEE---------------EEEEecCCC----CccCceEEEEEe-CCeEEEecccccCCCc
Confidence            99654 36666666776665531               111112111    111222233222 23466655553321  


Q ss_pred             ---EEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--------EEEEEe-----------cCCCEEEEEEc
Q 008467          485 ---LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK--------IVKTYT-----------GNGGIFEVCWN  542 (564)
Q Consensus       485 ---~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~--------~~~~~~-----------~~~~i~~~~w~  542 (564)
                         .+.+. ...+|.+++|++++..+|+-..||.|.+|......        +...+.           ....+..++|-
T Consensus       417 PMs~~~l~-~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (928)
T PF04762_consen  417 PMSSYELE-LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWL  495 (928)
T ss_pred             hHhceEEc-CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEe
Confidence               23333 34689999999999889999999999999854321        111111           12346789999


Q ss_pred             cCCCEEEEEEcC---CcEEEEEe
Q 008467          543 KEGDKIAACFAN---HTVCVLDF  562 (564)
Q Consensus       543 ~~g~~la~~~~~---~~v~v~~~  562 (564)
                      .+...++....+   ..+.++++
T Consensus       496 ~~~~~~~~~~~~~~~~~i~~~~~  518 (928)
T PF04762_consen  496 NDDTLLVLSDSDSNQSKIVLVDI  518 (928)
T ss_pred             CCCEEEEEEecCcccceEEEEEe
Confidence            988877776654   45555554

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.32  E-value=1.9e-09  Score=104.05  Aligned_cols=300  Identities=15%  Similarity=0.254  Sum_probs=190.0

Q ss_pred             cceEEEEECCCCCEEEEEECCCc---------------EEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeE-E
Q 008467          217 SEVCACAWSPAGSLLASGSGDST---------------ARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVT-T  280 (564)
Q Consensus       217 ~~V~~~~~sp~~~~lasgs~D~~---------------i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~-~  280 (564)
                      ..|.-+.|||.+++|.|=+..+.               +.+||+.++.....             +...  ....-.. -
T Consensus        72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~s-------------f~~~--~q~~~~Wp~  136 (561)
T COG5354          72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFS-------------FNGI--SQPYLGWPV  136 (561)
T ss_pred             CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEee-------------cccc--CCcccccce
Confidence            45788899999999999765443               88888877643211             1111  0111123 5


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEECCCceeEeecCC---CCCEEEEEeCCCCCE--EEE-----eeCCCcEEEEECCCcce
Q 008467          281 LDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKH---KGPIFSLKWNKKGDY--LLT-----GSCDKTAIVWDVKTEEW  350 (564)
Q Consensus       281 l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h---~~~V~~l~~~~~~~~--l~s-----~s~D~~v~iwd~~~~~~  350 (564)
                      +.|+-+..++|=- ....+.|++..+... ....|   ...|....|+|.++.  |+.     ...++++++|.+..+..
T Consensus       137 ~k~s~~D~y~ARv-v~~sl~i~e~t~n~~-~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~  214 (561)
T COG5354         137 LKFSIDDKYVARV-VGSSLYIHEITDNIE-EHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSV  214 (561)
T ss_pred             eeeeecchhhhhh-ccCeEEEEecCCccc-cCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCe
Confidence            6788887776644 345788888533221 11111   245777888887543  332     56778999999987776


Q ss_pred             eEEEeecccCeEEEEcCCCceEEEE------------eCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEe
Q 008467          351 KQQFEFHSGPTLDVDWRNNVSFATS------------STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS  418 (564)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s  418 (564)
                      +.+-.+-...-..+.|.....++.+            -+...++++++... .+....+-.++|...+|+|.++.+++++
T Consensus       215 l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~-~i~V~~~~~~pVhdf~W~p~S~~F~vi~  293 (561)
T COG5354         215 LVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER-SIPVEKDLKDPVHDFTWEPLSSRFAVIS  293 (561)
T ss_pred             eeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc-ccceeccccccceeeeecccCCceeEEe
Confidence            6655554445556677654332211            12346788887643 3333335578999999999998877665


Q ss_pred             --CCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC---CeEEEEeCCCCeEEE-EEeCCC
Q 008467          419 --DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD---STVKLWDVELGKLLY-SLNGHR  492 (564)
Q Consensus       419 --~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~-~~~~h~  492 (564)
                        .+-++.++|++.. .+..  ...+.-.++.|+|.+.         +++.++.|   |.|-+||......+. .+.+-.
T Consensus       294 g~~pa~~s~~~lr~N-l~~~--~Pe~~rNT~~fsp~~r---------~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n  361 (561)
T COG5354         294 GYMPASVSVFDLRGN-LRFY--FPEQKRNTIFFSPHER---------YILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN  361 (561)
T ss_pred             cccccceeecccccc-eEEe--cCCcccccccccCccc---------EEEEecCCccccceEEeccCCceEEEEEeecCC
Confidence              6888999998865 3332  2334446677777764         45555554   789999987554443 555432


Q ss_pred             CCEEEEEEcCCCCEEEEEe------CCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCC
Q 008467          493 EPVYSLAFSPTGEYLASGS------LDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANH  555 (564)
Q Consensus       493 ~~i~~~~~spdg~~lasgs------~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~  555 (564)
                        ..-+.|||||+++-+..      .|..|+||++...+.-       ..+.+.|.|.|+..-+.+...
T Consensus       362 --~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f-------el~~~~W~p~~~~~ttsSs~~  421 (561)
T COG5354         362 --TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF-------ELTNITWDPSGQYVTTSSSCP  421 (561)
T ss_pred             --ceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh-------hhhhccccCCcccceeeccCC
Confidence              34567999999987653      3788999998654322       466788888887766655543

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.31  E-value=1.5e-07  Score=93.58  Aligned_cols=258  Identities=13%  Similarity=0.236  Sum_probs=160.2

Q ss_pred             CCeEEEEECCCCCEEEEEeC----CCeEEEEECCC---cee--EeecCCCCCEEEEEeCCCCCEEEEee-CCCcEEEEEC
Q 008467          276 KDVTTLDWNGEGTLLATGSY----DGQARIWSTNG---DLK--CTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDV  345 (564)
Q Consensus       276 ~~V~~l~~s~~g~~l~sg~~----dg~i~vw~~~~---~~~--~~~~~h~~~V~~l~~~~~~~~l~s~s-~D~~v~iwd~  345 (564)
                      .....++++|++++|.+...    +|.|..|..+.   .+.  ............++.+|++++|+++. .+|+|.++++
T Consensus        37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l  116 (345)
T PF10282_consen   37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL  116 (345)
T ss_dssp             SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence            34567889999999999877    46888887543   332  22322334456789999999988876 5899999999


Q ss_pred             CC-cceeEEE--eec-----------ccCeEEEEcCCC--ceEEEEeCCCeEEEEEcCCCc--e--eeEec-CCCcceEE
Q 008467          346 KT-EEWKQQF--EFH-----------SGPTLDVDWRNN--VSFATSSTDNMIYVCKIGENR--P--IKTFA-GHQGEVNC  404 (564)
Q Consensus       346 ~~-~~~~~~~--~~~-----------~~~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~~--~--~~~~~-~h~~~i~~  404 (564)
                      .. +.+....  ..+           ......+.+.++  ..|++.-....|+++++....  .  ...+. .....-+.
T Consensus       117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh  196 (345)
T PF10282_consen  117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH  196 (345)
T ss_dssp             CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred             cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence            76 4433321  111           122455666544  345555566788888887654  1  12222 22345678


Q ss_pred             EEECCCCCEEEEEe-CCCcEEEEeCC--CCee--eeeccc----c--cccEEEEEEccCCCCCCCCCCcEEEEEEeCCCe
Q 008467          405 VKWDPTGSLLASCS-DDVTAKIWNMK--QDKY--VHDLRE----H--SKEIYTIRWSPTGSGTNNPNQQLILASASFDST  473 (564)
Q Consensus       405 v~~~~~~~~las~s-~dg~i~iwd~~--~~~~--~~~~~~----~--~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~  473 (564)
                      ++|+|+++++.... .+++|.++++.  .+..  +..+..    .  ......|+++|++.        .+.++.-..++
T Consensus       197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~--------~lyvsnr~~~s  268 (345)
T PF10282_consen  197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGR--------FLYVSNRGSNS  268 (345)
T ss_dssp             EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSS--------EEEEEECTTTE
T ss_pred             EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCC--------EEEEEeccCCE
Confidence            99999999875554 58889999887  3322  222111    1  12467788888875        45666667889


Q ss_pred             EEEEeCC--CCeE--EEEEeCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeC--CCCeEEEEEe--cCCCEEEEEE
Q 008467          474 VKLWDVE--LGKL--LYSLNGHREPVYSLAFSPTGEYLASGS-LDKSMHIWSL--KEGKIVKTYT--GNGGIFEVCW  541 (564)
Q Consensus       474 i~iwd~~--~~~~--~~~~~~h~~~i~~~~~spdg~~lasgs-~dg~i~iw~~--~~~~~~~~~~--~~~~i~~~~w  541 (564)
                      |.+|++.  ++++  +..+.........++++|+|++|+++. .++.|.+|++  .+|.+...-.  .-....+|.|
T Consensus       269 I~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f  345 (345)
T PF10282_consen  269 ISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF  345 (345)
T ss_dssp             EEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred             EEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence            9999983  3433  333433334478999999999998877 5678999976  5777654432  2334555555

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.30  E-value=9e-09  Score=113.16  Aligned_cols=274  Identities=14%  Similarity=0.236  Sum_probs=174.6

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEE----ECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcce
Q 008467          275 SKDVTTLDWNGEGTLLATGSYDGQARIW----STNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW  350 (564)
Q Consensus       275 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw----~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~  350 (564)
                      ...|.++.+-++...++.+..+|.|.+.    +.+.........-...|.+++||||+..|+....++++.+-+ ++.+.
T Consensus        75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~fd~  153 (928)
T PF04762_consen   75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT-RDFDP  153 (928)
T ss_pred             CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccceE
Confidence            4679999999999999999999999999    554444444445567899999999999999999999988875 34444


Q ss_pred             eEEEeecc-----cCeEEEEcCCC-ceEEEEeCCCeEEEEEcCCCce---eeEecCCCcceEEEEECCCCCEEEEEeC--
Q 008467          351 KQQFEFHS-----GPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRP---IKTFAGHQGEVNCVKWDPTGSLLASCSD--  419 (564)
Q Consensus       351 ~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~---~~~~~~h~~~i~~v~~~~~~~~las~s~--  419 (564)
                      +.....+.     ...+.+.|-.. ..|=...+...-+- ..+...|   ...+. +...-..++|..||.++|+.+-  
T Consensus       154 i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~-~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~  231 (928)
T PF04762_consen  154 ISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQ-LRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEP  231 (928)
T ss_pred             EEEeecCccccCCCceeeeccCcccCccCcchhhhhhhh-ccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEc
Confidence            43333322     22345555332 12211111000000 0000001   11222 3445567999999999998774  


Q ss_pred             -C---CcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeC---CCeEEEEeCCCCeEEEEE----
Q 008467          420 -D---VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF---DSTVKLWDVELGKLLYSL----  488 (564)
Q Consensus       420 -d---g~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~----  488 (564)
                       .   ..+|||+-. +.....-..-.+--.+++|.|.|.         ++|+.-.   ...|.+|.- +|-.-..+    
T Consensus       232 ~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~---------lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~  300 (928)
T PF04762_consen  232 ETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGN---------LIASSQRLPDRHDVVFFER-NGLRHGEFTLRF  300 (928)
T ss_pred             CCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCC---------EEEEEEEcCCCcEEEEEec-CCcEeeeEecCC
Confidence             3   478999854 443332222233345789999886         5666543   345666653 34333222    


Q ss_pred             eCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--EEEEE--ecCCCEEEEEEccCC-CEEEEEEcCCcEEEEEee
Q 008467          489 NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK--IVKTY--TGNGGIFEVCWNKEG-DKIAACFANHTVCVLDFR  563 (564)
Q Consensus       489 ~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~--~~~~~--~~~~~i~~~~w~~~g-~~la~~~~~~~v~v~~~~  563 (564)
                      ......|..+.|++|+..||..-.|. |.+|-..+..  +.+.+  .....+..+.|+|.. ..|.+...+|.+.+++|.
T Consensus       301 ~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~  379 (928)
T PF04762_consen  301 DPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA  379 (928)
T ss_pred             CCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEE
Confidence            23456799999999999999977666 9999998875  33333  333445569999964 578888787888777764

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.29  E-value=1.6e-11  Score=133.36  Aligned_cols=201  Identities=17%  Similarity=0.336  Sum_probs=154.3

Q ss_pred             ccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEE
Q 008467          212 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA  291 (564)
Q Consensus       212 l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~  291 (564)
                      ++.|-..|.++.=||...+-+||+.||.+++|....+.          ++.+.+.     .+ ...|+.+.|+.+|+.+.
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~----------~v~~~rt-----~g-~s~vtr~~f~~qGnk~~ 2267 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQ----------QVVCFRT-----AG-NSRVTRSRFNHQGNKFG 2267 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCC----------eEEEeec-----cC-cchhhhhhhcccCCcee
Confidence            34445678888889999999999999999999986543          2222222     12 26799999999999999


Q ss_pred             EEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEee---CCCcEEEEECCCcceeEEEeecccCeEEEEcCC
Q 008467          292 TGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGS---CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN  368 (564)
Q Consensus       292 sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s---~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  368 (564)
                      .+..||.+.+|..+.+.....+.|.......+|-.  ..+++++   .++.+.+||..-...                  
T Consensus      2268 i~d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~------------------ 2327 (2439)
T KOG1064|consen 2268 IVDGDGDLSLWQASPKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPM------------------ 2327 (2439)
T ss_pred             eeccCCceeecccCCcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcc------------------
Confidence            99999999999999888788889999888888875  4556553   356788888422100                  


Q ss_pred             CceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEE
Q 008467          369 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR  448 (564)
Q Consensus       369 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~  448 (564)
                                          ...+.  ..|.+.++++++-|..++|+||+.+|.|++||++..+.++.++.         
T Consensus      2328 --------------------~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~--------- 2376 (2439)
T KOG1064|consen 2328 --------------------NSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA--------- 2376 (2439)
T ss_pred             --------------------cceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------
Confidence                                01111  56889999999999999999999999999999998887776654         


Q ss_pred             EccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEe
Q 008467          449 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN  489 (564)
Q Consensus       449 ~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  489 (564)
                      +.          .+.++++|+..|.|+||++..-..++++.
T Consensus      2377 ~~----------~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2377 LD----------TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             hh----------hhheeeccCcccceEEEEccccchhhcCc
Confidence            11          12378999999999999998766666553

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.28  E-value=2.5e-09  Score=106.92  Aligned_cols=223  Identities=18%  Similarity=0.362  Sum_probs=152.6

Q ss_pred             eEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE
Q 008467          210 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL  289 (564)
Q Consensus       210 ~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~  289 (564)
                      .+|.||...|..+.|+.+...|-|...+|.|.+|-+..+.......               .+...+.|.+++|+.||+.
T Consensus        65 QtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMi---------------NnRnKSvV~SmsWn~dG~k  129 (1189)
T KOG2041|consen   65 QTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMI---------------NNRNKSVVVSMSWNLDGTK  129 (1189)
T ss_pred             hhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHh---------------hCcCccEEEEEEEcCCCcE
Confidence            5789999999999999999999999999999999987764321110               1123456899999999999


Q ss_pred             EEEEeCCCeEEEEECCCceeE--eecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcc---eeEE--------Eee
Q 008467          290 LATGSYDGQARIWSTNGDLKC--TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE---WKQQ--------FEF  356 (564)
Q Consensus       290 l~sg~~dg~i~vw~~~~~~~~--~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~---~~~~--------~~~  356 (564)
                      +.....||.|.|=.++|....  .+.+.  -...+.|++|...++.+-..|.+.++|-+..-   +...        +..
T Consensus       130 IcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~  207 (1189)
T KOG2041|consen  130 ICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSN  207 (1189)
T ss_pred             EEEEEccCCEEEEeeccceecchhcchh--eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecC
Confidence            999999999988777665332  12221  12367899999999999999999999965321   1000        110


Q ss_pred             cccCeEEEEcC---------CCceEEEEeCCCeEEEEEcCC-CceeeEecCCCcceEEEEECCCCCEEEEEeCCC-----
Q 008467          357 HSGPTLDVDWR---------NNVSFATSSTDNMIYVCKIGE-NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV-----  421 (564)
Q Consensus       357 ~~~~~~~~~~~---------~~~~~~~~~~d~~i~~~~~~~-~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg-----  421 (564)
                      ....+..+.|.         +.-.++.|-..|.+.+..-.+ ..|+..-.|  -.+..+.|+++|..||.|+.|.     
T Consensus       208 ~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~  285 (1189)
T KOG2041|consen  208 FPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEP  285 (1189)
T ss_pred             CCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCcccccCc
Confidence            11123445553         224688888888877665433 334433222  4678899999999999998753     


Q ss_pred             ----cEEEEeCCCCeeeeecccccccEEEEEEccC
Q 008467          422 ----TAKIWNMKQDKYVHDLREHSKEIYTIRWSPT  452 (564)
Q Consensus       422 ----~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~  452 (564)
                          .|.++.. -+..+.+++.....|++++|-..
T Consensus       286 ~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~  319 (1189)
T KOG2041|consen  286 TDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGT  319 (1189)
T ss_pred             cccceEEEecc-chhheEEEecCCceeeeeEEcCC
Confidence                3444432 34556677777788888888543

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.25  E-value=5.3e-08  Score=98.40  Aligned_cols=293  Identities=14%  Similarity=0.134  Sum_probs=175.7

Q ss_pred             CCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEC-C
Q 008467          227 AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST-N  305 (564)
Q Consensus       227 ~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~-~  305 (564)
                      .+..++.++.++.+.-+|..+|+......           ....  ....    ..  .++..++.++.+|.+..+|. +
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~-----------~~~~--~~~~----p~--v~~~~v~v~~~~g~l~ald~~t  124 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVD-----------LDER--LSGG----VG--ADGGLVFVGTEKGEVIALDAED  124 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeec-----------CCCC--cccc----eE--EcCCEEEEEcCCCEEEEEECCC
Confidence            36678888889999999988775422110           0000  0011    11  24667888889999999997 4


Q ss_pred             CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeE-----EEEcCCCceEEEEeCCCe
Q 008467          306 GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL-----DVDWRNNVSFATSSTDNM  380 (564)
Q Consensus       306 ~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~d~~  380 (564)
                      |++....... +.+.+.-.. .+..++.++.++.+..||.++++.+-.+........     .....+ ..++.+..++.
T Consensus       125 G~~~W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~-~~v~~~~~~g~  201 (377)
T TIGR03300       125 GKELWRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIAD-GGVLVGFAGGK  201 (377)
T ss_pred             CcEeeeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEEC-CEEEEECCCCE
Confidence            6655443321 222211001 245777888899999999999987665543322110     000112 34556677788


Q ss_pred             EEEEEcCCCceeeEecCC-----Cc--c---e-EEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEE
Q 008467          381 IYVCKIGENRPIKTFAGH-----QG--E---V-NCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW  449 (564)
Q Consensus       381 i~~~~~~~~~~~~~~~~h-----~~--~---i-~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~  449 (564)
                      ++.++..+++.+-.....     ..  .   + .+..+  .+..++.++.+|.+..||..+++.+...... . ......
T Consensus       202 v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~-~-~~~p~~  277 (377)
T TIGR03300       202 LVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDAS-S-YQGPAV  277 (377)
T ss_pred             EEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeeccC-C-ccCceE
Confidence            888888777654332210     00  0   0 11111  2456777888999999999988766543211 0 001110


Q ss_pred             ccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCC-CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 008467          450 SPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHRE-PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK  528 (564)
Q Consensus       450 ~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~-~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~  528 (564)
                        .       ++  .+..++.||.|..+|..+|+.+........ ...+...  .+..|++++.+|.|+++|..+|+++.
T Consensus       278 --~-------~~--~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~  344 (377)
T TIGR03300       278 --D-------DN--RLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVA  344 (377)
T ss_pred             --e-------CC--EEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence              0       11  455677899999999999998876632211 1122222  46788999999999999999999998


Q ss_pred             EEecCC-CEE-EEEEccCCCEEEEEEcCCcEEEE
Q 008467          529 TYTGNG-GIF-EVCWNKEGDKIAACFANHTVCVL  560 (564)
Q Consensus       529 ~~~~~~-~i~-~~~w~~~g~~la~~~~~~~v~v~  560 (564)
                      .+...+ .+. ..+.  -++.|.+++.||.|..|
T Consensus       345 ~~~~~~~~~~~sp~~--~~~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       345 RLKTDGSGIASPPVV--VGDGLLVQTRDGDLYAF  376 (377)
T ss_pred             EEEcCCCccccCCEE--ECCEEEEEeCCceEEEe
Confidence            887544 222 2222  23467888889887654

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.23  E-value=1.5e-08  Score=113.69  Aligned_cols=249  Identities=12%  Similarity=0.117  Sum_probs=158.8

Q ss_pred             EEEEECCC-CCEEEEEeCCCeEEEEECCCceeEeecC--C------------CCCEEEEEeCCCCCEEEEeeC-CCcEEE
Q 008467          279 TTLDWNGE-GTLLATGSYDGQARIWSTNGDLKCTLSK--H------------KGPIFSLKWNKKGDYLLTGSC-DKTAIV  342 (564)
Q Consensus       279 ~~l~~s~~-g~~l~sg~~dg~i~vw~~~~~~~~~~~~--h------------~~~V~~l~~~~~~~~l~s~s~-D~~v~i  342 (564)
                      ..++++++ +.++++-+.++.|++|+..+.....+..  .            -....+++++++++.|+.+.. .+.|++
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~  650 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE  650 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence            45788874 6677777788999999988876544432  1            112477889888887665544 467888


Q ss_pred             EECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCc--eeeEecCCCcceEEEEECC-CCCEEEEEeC
Q 008467          343 WDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR--PIKTFAGHQGEVNCVKWDP-TGSLLASCSD  419 (564)
Q Consensus       343 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~--~~~~~~~h~~~i~~v~~~~-~~~~las~s~  419 (564)
                      +|+.++.. .++....                  ..+.    +...+.  ....+    ..-..++++| ++.++++.+.
T Consensus       651 id~~~~~V-~tlag~G------------------~~g~----~~~gg~~~~~~~l----n~P~gVa~dp~~g~LyVad~~  703 (1057)
T PLN02919        651 IDFVNETV-RTLAGNG------------------TKGS----DYQGGKKGTSQVL----NSPWDVCFEPVNEKVYIAMAG  703 (1057)
T ss_pred             EecCCCEE-EEEeccC------------------cccC----CCCCChhhhHhhc----CCCeEEEEecCCCeEEEEECC
Confidence            88766532 2221100                  0000    000000  00000    1234789999 5677788888


Q ss_pred             CCcEEEEeCCCCeeeeecccc---------------cccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE
Q 008467          420 DVTAKIWNMKQDKYVHDLREH---------------SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL  484 (564)
Q Consensus       420 dg~i~iwd~~~~~~~~~~~~~---------------~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~  484 (564)
                      ++.|++||..++... .+.+.               -.....++++|++.        .++++-+.++.|++||+.++..
T Consensus       704 ~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~--------~LYVADs~n~~Irv~D~~tg~~  774 (1057)
T PLN02919        704 QHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLK--------ELYIADSESSSIRALDLKTGGS  774 (1057)
T ss_pred             CCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCC--------EEEEEECCCCeEEEEECCCCcE
Confidence            999999998766432 11111               01224567776653        3556677789999999987653


Q ss_pred             EEEEeC-------------C--------CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC----------
Q 008467          485 LYSLNG-------------H--------REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN----------  533 (564)
Q Consensus       485 ~~~~~~-------------h--------~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~----------  533 (564)
                      .....+             +        ......++|+++|..+++-+.+++|++||..++.+.......          
T Consensus       775 ~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~  854 (1057)
T PLN02919        775 RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKAL  854 (1057)
T ss_pred             EEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCccc
Confidence            211100             0        012368999999999999999999999999887765332110          


Q ss_pred             ----CCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          534 ----GGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       534 ----~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                          .....++++++|+.+++...|+.|++||++
T Consensus       855 ~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~  888 (1057)
T PLN02919        855 KAQLSEPAGLALGENGRLFVADTNNSLIRYLDLN  888 (1057)
T ss_pred             ccccCCceEEEEeCCCCEEEEECCCCEEEEEECC
Confidence                135689999999988888899999999975

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.23  E-value=1.6e-07  Score=91.14  Aligned_cols=239  Identities=13%  Similarity=0.123  Sum_probs=144.1

Q ss_pred             ECCCCCEEEEEeC----------CCeEEEEECCC-ceeEeecCC-------CCCEEEEEeCCCCCEEEEee-C-CCcEEE
Q 008467          283 WNGEGTLLATGSY----------DGQARIWSTNG-DLKCTLSKH-------KGPIFSLKWNKKGDYLLTGS-C-DKTAIV  342 (564)
Q Consensus       283 ~s~~g~~l~sg~~----------dg~i~vw~~~~-~~~~~~~~h-------~~~V~~l~~~~~~~~l~s~s-~-D~~v~i  342 (564)
                      .||||+.|.++..          +..|.+||... +....+.--       ...-..++++|+|++|+... . +..|.+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V  132 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV  132 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence            8999998888766          68999999764 344333321       11223678899999998766 3 689999


Q ss_pred             EECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCC-Cce----eeEecCCCcce-EEEEECC-CCCEEE
Q 008467          343 WDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE-NRP----IKTFAGHQGEV-NCVKWDP-TGSLLA  415 (564)
Q Consensus       343 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~----~~~~~~h~~~i-~~v~~~~-~~~~la  415 (564)
                      .|+.+++.+..+.... ...-+...+.. |..-+.|+......++. ++.    ...|.+-...+ ..-.|.+ +|+++.
T Consensus       133 vD~~~~kvv~ei~vp~-~~~vy~t~e~~-~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~  210 (352)
T TIGR02658       133 VDLEGKAFVRMMDVPD-CYHIFPTANDT-FFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVW  210 (352)
T ss_pred             EECCCCcEEEEEeCCC-CcEEEEecCCc-cEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEE
Confidence            9999999888776532 22222222222 22333444443333222 111    11121111110 0113445 788776


Q ss_pred             EEeCCCcEEEEeCCCCee-----eeeccc-------ccccEEEEEEccCCCCCCCCCCcEEEEEEeC--------CCeEE
Q 008467          416 SCSDDVTAKIWNMKQDKY-----VHDLRE-------HSKEIYTIRWSPTGSGTNNPNQQLILASASF--------DSTVK  475 (564)
Q Consensus       416 s~s~dg~i~iwd~~~~~~-----~~~~~~-------~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~--------dg~i~  475 (564)
                      ...+ |+|.+.|+.....     ...+..       ..+...-++++|++.       ..+++.-..        .+.|.
T Consensus       211 vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~-------~lyV~~~~~~~~thk~~~~~V~  282 (352)
T TIGR02658       211 PTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARD-------RIYLLADQRAKWTHKTASRFLF  282 (352)
T ss_pred             EecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCC-------EEEEEecCCccccccCCCCEEE
Confidence            6666 9999999644322     211111       111122255555543       223322111        25899


Q ss_pred             EEeCCCCeEEEEEeCCCCCEEEEEEcCCCC-EEEEEe-CCCcEEEEeCCCCeEEEEEec
Q 008467          476 LWDVELGKLLYSLNGHREPVYSLAFSPTGE-YLASGS-LDKSMHIWSLKEGKIVKTYTG  532 (564)
Q Consensus       476 iwd~~~~~~~~~~~~h~~~i~~~~~spdg~-~lasgs-~dg~i~iw~~~~~~~~~~~~~  532 (564)
                      ++|..+++.+..+.- ...+..|+|||||+ +|.+.. .++.|.++|+.+++.+++...
T Consensus       283 ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~~  340 (352)
T TIGR02658       283 VVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVNQ  340 (352)
T ss_pred             EEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeecc
Confidence            999999999988763 34789999999999 877666 578899999999999998743

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.22  E-value=6.8e-11  Score=128.71  Aligned_cols=245  Identities=18%  Similarity=0.306  Sum_probs=174.5

Q ss_pred             CCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeeccc-CeEEE
Q 008467          286 EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG-PTLDV  364 (564)
Q Consensus       286 ~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-~~~~~  364 (564)
                      .++.+.....++...-|...+.-. .+..+-..|.++.-+|...+-+||+.||.|++|....+..+-.+..... .+..+
T Consensus      2179 ~s~~~~~~n~~~~~~tq~~~~~~~-~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~ 2257 (2439)
T KOG1064|consen 2179 FSNRFTPSNLPWLGSTQTSRGASV-MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRS 2257 (2439)
T ss_pred             ccccCCcccCCccccceeccccee-EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhh
Confidence            344555555566666666544322 2344556788888899999999999999999998777665555543322 22222


Q ss_pred             Ec-CCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEe---CCCcEEEEeCCC---Ceeeeec
Q 008467          365 DW-RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS---DDVTAKIWNMKQ---DKYVHDL  437 (564)
Q Consensus       365 ~~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s---~dg~i~iwd~~~---~~~~~~~  437 (564)
                      .+ .....|..+..||.+.+|... .+|......|....+.+.|-.  .++++++   +++.+.+||..-   ..+++  
T Consensus      2258 ~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-- 2332 (2439)
T KOG1064|consen 2258 RFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-- 2332 (2439)
T ss_pred             hhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--
Confidence            33 355678889999999999987 677888888988888777754  6677754   478899999642   22344  


Q ss_pred             ccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 008467          438 REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMH  517 (564)
Q Consensus       438 ~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~  517 (564)
                      ..|.+..+++++.|...         +|+||+.+|.|++||++..++++++..         +. ...++++|+..|.|+
T Consensus      2333 ~~H~~gaT~l~~~P~~q---------llisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ik 2393 (2439)
T KOG1064|consen 2333 TCHDGGATVLAYAPKHQ---------LLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIK 2393 (2439)
T ss_pred             eecCCCceEEEEcCcce---------EEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceE
Confidence            68999999999999754         789999999999999998777655543         33 567899999999999


Q ss_pred             EEeCCCCeEEEEEecC---CCEE---EEEEc-cCCCEEEEEEcCC
Q 008467          518 IWSLKEGKIVKTYTGN---GGIF---EVCWN-KEGDKIAACFANH  555 (564)
Q Consensus       518 iw~~~~~~~~~~~~~~---~~i~---~~~w~-~~g~~la~~~~~~  555 (564)
                      ||++..-.+++++...   ++++   ....+ -..++|.+|..||
T Consensus      2394 Iw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~~~nrifsCgad~ 2438 (2439)
T KOG1064|consen 2394 IWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVGQCNRIFSCGADG 2438 (2439)
T ss_pred             EEEccccchhhcCchhhcccchhhhcCceeeeccCceEEEecCCC
Confidence            9999988888887643   2221   11111 1245777777765

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.20  E-value=6e-10  Score=100.80  Aligned_cols=267  Identities=21%  Similarity=0.421  Sum_probs=168.2

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCc------eeEeecCCC------------CCEEEEEeCCCC--CEEEEe
Q 008467          275 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD------LKCTLSKHK------------GPIFSLKWNKKG--DYLLTG  334 (564)
Q Consensus       275 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~------~~~~~~~h~------------~~V~~l~~~~~~--~~l~s~  334 (564)
                      ...|+++.|...|.++++|...|.|.++..+..      ....+++|.            ..|..+.|..++  ..++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            356999999999999999999999999975432      223355664            357788887655  457777


Q ss_pred             eCCCcEEEEECCCcceeEE--------Eeec-ccCeEEEEcCCCceEEE-EeCCCeEEEEEcCCCceeeEe-cCCCcceE
Q 008467          335 SCDKTAIVWDVKTEEWKQQ--------FEFH-SGPTLDVDWRNNVSFAT-SSTDNMIYVCKIGENRPIKTF-AGHQGEVN  403 (564)
Q Consensus       335 s~D~~v~iwd~~~~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~-~~~d~~i~~~~~~~~~~~~~~-~~h~~~i~  403 (564)
                      +.|++|++|-+....+.-.        +... .+++....-   ..+-- +.-|..|.      .+|.+.+ ..|.-.|+
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~---l~lprls~hd~iia------a~p~rvyaNaH~yhiN  176 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKE---LLLPRLSEHDEIIA------AKPCRVYANAHPYHIN  176 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHH---hhcccccccceEEE------eccceeccccceeEee
Confidence            8999999998865432211        1100 111111000   00000 00011111      1234444 56888999


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEeCCCC---eeeeeccccc-----ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEE
Q 008467          404 CVKWDPTGSLLASCSDDVTAKIWNMKQD---KYVHDLREHS-----KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVK  475 (564)
Q Consensus       404 ~v~~~~~~~~las~s~dg~i~iwd~~~~---~~~~~~~~~~-----~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~  475 (564)
                      ++.++.|...++++ +|=.|.+|++.-.   -.+..++.|.     ..|++..|+|...        .++.-.+..|+|+
T Consensus       177 SiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~c--------n~fmYSsSkG~Ik  247 (460)
T COG5170         177 SISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMC--------NVFMYSSSKGEIK  247 (460)
T ss_pred             eeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHc--------ceEEEecCCCcEE
Confidence            99999998877654 6778999987532   1233444443     3466777777543        3566677789999


Q ss_pred             EEeCCCCeE------EEEE--e--------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-EEEEEec------
Q 008467          476 LWDVELGKL------LYSL--N--------GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK-IVKTYTG------  532 (564)
Q Consensus       476 iwd~~~~~~------~~~~--~--------~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~-~~~~~~~------  532 (564)
                      +-|++...+      ++..  .        +-...|..+.|+++|+||++-+. -+|+|||++..+ ++++...      
T Consensus       248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~  326 (460)
T COG5170         248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMD  326 (460)
T ss_pred             ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHH
Confidence            999984221      1111  1        11246888999999999987664 479999997653 5666532      


Q ss_pred             -------CCCE---EEEEEccCCCEEEEEEcCCcEEEE
Q 008467          533 -------NGGI---FEVCWNKEGDKIAACFANHTVCVL  560 (564)
Q Consensus       533 -------~~~i---~~~~w~~~g~~la~~~~~~~v~v~  560 (564)
                             +.+|   +.+.|+.|.+.+.+|+-+...-+|
T Consensus       327 ~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiy  364 (460)
T COG5170         327 ELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIY  364 (460)
T ss_pred             HHHhhhhccceeeeEEEEecCCcccccccccccceeee
Confidence                   2345   468999999888888766555444

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.20  E-value=2.3e-09  Score=96.57  Aligned_cols=249  Identities=19%  Similarity=0.270  Sum_probs=158.8

Q ss_pred             ccceEEEEECC---CCC-EEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEE
Q 008467          216 TSEVCACAWSP---AGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA  291 (564)
Q Consensus       216 ~~~V~~~~~sp---~~~-~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~  291 (564)
                      ++.++.+.|.-   +|. .|+-+-.+|.|.++.......          ...++....... ....-.++.|++.+..++
T Consensus        69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~s----------s~~L~~ls~~ki-~~~~~lslD~~~~~~~i~  137 (339)
T KOG0280|consen   69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDES----------SVHLRGLSSKKI-SVVEALSLDISTSGTKIF  137 (339)
T ss_pred             ccccceeeeeeccCCccceeeeccccceEEEEeecccee----------eeeecccchhhh-hheeeeEEEeeccCceEE
Confidence            34566777764   344 556666778888887543211          011111111000 001246789999999999


Q ss_pred             EEeCCCeEEEEE-CCCceeE--eecCCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCC-cceeEEEeecccCeEEEEc
Q 008467          292 TGSYDGQARIWS-TNGDLKC--TLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKT-EEWKQQFEFHSGPTLDVDW  366 (564)
Q Consensus       292 sg~~dg~i~vw~-~~~~~~~--~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~  366 (564)
                      ++..+|.+.+-+ ....+..  ....|.-+.+..+|+... +.+++|+.|+.+..||++. ++++               
T Consensus       138 vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i---------------  202 (339)
T KOG0280|consen  138 VSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI---------------  202 (339)
T ss_pred             EEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee---------------
Confidence            999999998544 3344443  678999999999998654 5788999999999999982 2211               


Q ss_pred             CCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECC-CCCEEEEEeCCCcEEEEeCCC-CeeeeecccccccE
Q 008467          367 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQ-DKYVHDLREHSKEI  444 (564)
Q Consensus       367 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~-~~~~las~s~dg~i~iwd~~~-~~~~~~~~~~~~~i  444 (564)
                                       |.        .-+-|...|.+|.-+| .+.+|+||+.|-.|++||.++ ++++..- .-.+.|
T Consensus       203 -----------------~~--------n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~-~v~GGV  256 (339)
T KOG0280|consen  203 -----------------WH--------NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA-KVGGGV  256 (339)
T ss_pred             -----------------ee--------cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC-ccccce
Confidence                             10        0123667788888775 467899999999999999984 4554432 234789


Q ss_pred             EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC--e---EEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCCcEE-
Q 008467          445 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG--K---LLYSLNGHREPVYSLAFSPTGEYLASGS-LDKSMH-  517 (564)
Q Consensus       445 ~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~--~---~~~~~~~h~~~i~~~~~spdg~~lasgs-~dg~i~-  517 (564)
                      +.+.++|...       ..+|+++ +-.-.+|-+...+  +   .....+.|.+-++.-.|.....+|||++ .|+.|+ 
T Consensus       257 WRi~~~p~~~-------~~lL~~C-Mh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~  328 (339)
T KOG0280|consen  257 WRIKHHPEIF-------HRLLAAC-MHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQ  328 (339)
T ss_pred             EEEEecchhh-------hHHHHHH-HhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceee
Confidence            9999998653       1234444 4344666666543  2   3344566766666666754456799876 366644 


Q ss_pred             EEeCCCC
Q 008467          518 IWSLKEG  524 (564)
Q Consensus       518 iw~~~~~  524 (564)
                      +|-.-++
T Consensus       329 ~Wl~~t~  335 (339)
T KOG0280|consen  329 LWLHITG  335 (339)
T ss_pred             eeeeccC
Confidence            6654433

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.17  E-value=5.2e-11  Score=115.26  Aligned_cols=182  Identities=20%  Similarity=0.351  Sum_probs=131.5

Q ss_pred             eEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCC
Q 008467          309 KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE  388 (564)
Q Consensus       309 ~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~  388 (564)
                      .+.+.+|+..|..+.--.+.+-+++++.|++|++|.++...                            |      .+++
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~Eg----------------------------D------~~~t  773 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEG----------------------------D------EIGT  773 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEecccc----------------------------C------cccc
Confidence            45678899998888777778889999999999999886531                            0      0111


Q ss_pred             CceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeeccc--ccccEEEEEEccCCCCCCCCCCcEEEE
Q 008467          389 NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE--HSKEIYTIRWSPTGSGTNNPNQQLILA  466 (564)
Q Consensus       389 ~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~--~~~~i~~i~~~p~~~~~~~~~~~~~l~  466 (564)
                      ..+..++..|..+|..+.|-.+-+.+++|  ||.|++||.--++++..+..  ..+.+..+..-|.      -+...+++
T Consensus       774 saCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~n------v~~~iliA  845 (1034)
T KOG4190|consen  774 SACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN------VDRHILIA  845 (1034)
T ss_pred             ceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEeccc------Ccchheee
Confidence            23445678899999999998888887765  89999999876665543321  1112222222222      12234566


Q ss_pred             EEeCCCeEEEEeCCCCeEEEEEeC-----CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec
Q 008467          467 SASFDSTVKLWDVELGKLLYSLNG-----HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG  532 (564)
Q Consensus       467 s~s~dg~i~iwd~~~~~~~~~~~~-----h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~  532 (564)
                      .|+...+|+++|.+.+.-...++-     -..-+.+++..|.|+++|+|=..|.|.+.|.++|+++..|..
T Consensus       846 gcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrp  916 (1034)
T KOG4190|consen  846 GCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRP  916 (1034)
T ss_pred             eccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCc
Confidence            668899999999998765544432     234578999999999999999999999999999999887764

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.14  E-value=8.3e-07  Score=86.24  Aligned_cols=245  Identities=11%  Similarity=0.069  Sum_probs=142.0

Q ss_pred             CeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEEEeeC----------CCcEEEEECCCcceeEEEeecccCe----
Q 008467          297 GQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSC----------DKTAIVWDVKTEEWKQQFEFHSGPT----  361 (564)
Q Consensus       297 g~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~----------D~~v~iwd~~~~~~~~~~~~~~~~~----  361 (564)
                      +.|.+.|... +.+..+..-..|-. + ++|+|+.|+.+..          +..|.+||+.+.+.+..+.....|-    
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            7888888754 34444543333432 4 8999999887766          6899999999999888776532211    


Q ss_pred             ---EEEEcCCC--ceEEEE-eCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEe--------CCCcEEEEe
Q 008467          362 ---LDVDWRNN--VSFATS-STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS--------DDVTAKIWN  427 (564)
Q Consensus       362 ---~~~~~~~~--~~~~~~-~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s--------~dg~i~iwd  427 (564)
                         ..+...++  ..|+.- +.++.+.+.|+...+.+..+.-           |++..++..+        -||......
T Consensus       105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-----------p~~~~vy~t~e~~~~~~~~Dg~~~~v~  173 (352)
T TIGR02658       105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-----------PDCYHIFPTANDTFFMHCRDGSLAKVG  173 (352)
T ss_pred             CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC-----------CCCcEEEEecCCccEEEeecCceEEEE
Confidence               12223333  233333 2367777888877776655432           3333333322        233322222


Q ss_pred             CCCCeeee--ecc-ccc--ccEEEE-EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-----eEEEEEeC------
Q 008467          428 MKQDKYVH--DLR-EHS--KEIYTI-RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-----KLLYSLNG------  490 (564)
Q Consensus       428 ~~~~~~~~--~~~-~~~--~~i~~i-~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-----~~~~~~~~------  490 (564)
                      +.......  ... .+.  .++..- .+.+       .++..+++|.  .|+|.+.|+...     .....+..      
T Consensus       174 ~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~-------~dg~~~~vs~--eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~  244 (352)
T TIGR02658       174 YGTKGNPKIKPTEVFHPEDEYLINHPAYSN-------KSGRLVWPTY--TGKIFQIDLSSGDAKFLPAIEAFTEAEKADG  244 (352)
T ss_pred             ecCCCceEEeeeeeecCCccccccCCceEc-------CCCcEEEEec--CCeEEEEecCCCcceecceeeeccccccccc
Confidence            11111000  000 000  000000 1122       1233344443  399999996432     22222211      


Q ss_pred             -CCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCC-EEEEEE-cCCcE
Q 008467          491 -HREPVYSLAFSPTGEYLASGSL----------DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGD-KIAACF-ANHTV  557 (564)
Q Consensus       491 -h~~~i~~~~~spdg~~lasgs~----------dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~-~la~~~-~~~~v  557 (564)
                       ....+.-++++|+|+.+..+..          .+.|.++|..+++.+..+.....+..++++|||+ +|.+.. .++.|
T Consensus       245 wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~V  324 (352)
T TIGR02658       245 WRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTL  324 (352)
T ss_pred             cCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcE
Confidence             1123345999999988877431          2579999999999999988878899999999999 777665 57789


Q ss_pred             EEEEee
Q 008467          558 CVLDFR  563 (564)
Q Consensus       558 ~v~~~~  563 (564)
                      .|+|..
T Consensus       325 sViD~~  330 (352)
T TIGR02658       325 YIFDAE  330 (352)
T ss_pred             EEEECc
Confidence            999974

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions

Probab=99.13  E-value=6.8e-12  Score=71.55  Aligned_cols=27  Identities=44%  Similarity=0.642  Sum_probs=24.7

Q ss_pred             cchhhhhHHHHHhcCCceeeecccccc
Q 008467            7 EELNYLVFRYLQESGLLHSAFVLGYEA   33 (564)
Q Consensus         7 ~evn~Li~ryl~E~g~~~sa~~~~~E~   33 (564)
                      ++||+|||+||+++||.+||.+|.+|+
T Consensus         1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea   27 (27)
T PF08513_consen    1 EELNQLIYDYLVENGYKETAKAFAKEA   27 (27)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence            589999999999999999999999986

The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.10  E-value=1.7e-07  Score=105.20  Aligned_cols=266  Identities=11%  Similarity=0.107  Sum_probs=157.5

Q ss_pred             EEEEECCC-CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccc-cccCCCCeEEEEECCCCCEEEEEe-CC
Q 008467          220 CACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGR-TNEKSKDVTTLDWNGEGTLLATGS-YD  296 (564)
Q Consensus       220 ~~~~~sp~-~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~V~~l~~s~~g~~l~sg~-~d  296 (564)
                      ..+++++. +.++++-+..+.|++||............+....     ..+. ....-..-..++++++++.|.++. .+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~-----~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n  645 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGL-----RDGSFEDATFNRPQGLAYNAKKNLLYVADTEN  645 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCC-----CCCchhccccCCCcEEEEeCCCCEEEEEeCCC
Confidence            35788875 6677887888999999975321100000000000     0000 001112356789999888666554 45


Q ss_pred             CeEEEEECCCceeEeecCC-----------------CCCEEEEEeCC-CCCEEEEeeCCCcEEEEECCCcceeEEEeecc
Q 008467          297 GQARIWSTNGDLKCTLSKH-----------------KGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS  358 (564)
Q Consensus       297 g~i~vw~~~~~~~~~~~~h-----------------~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~  358 (564)
                      +.|++++..+....++.+-                 -..-+.++++| ++..+++.+.+++|++||..++... .+.   
T Consensus       646 ~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~---  721 (1057)
T PLN02919        646 HALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFS---  721 (1057)
T ss_pred             ceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEe---
Confidence            7899998766555444221                 01235789999 4556677778899999998765432 111   


Q ss_pred             cCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeeeeec
Q 008467          359 GPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQDKYVHDL  437 (564)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~-~las~s~dg~i~iwd~~~~~~~~~~  437 (564)
                                        .++.....  .....   ....-.....++++|+++ ++++-+.++.|++||+.++......
T Consensus       722 ------------------G~G~~~~~--~g~~~---~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~  778 (1057)
T PLN02919        722 ------------------GDGYERNL--NGSSG---TSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLA  778 (1057)
T ss_pred             ------------------cCCccccC--CCCcc---ccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEE
Confidence                              01100000  00000   000112356799999998 5566677899999998865432110


Q ss_pred             cc-------------cc--------ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEe-------
Q 008467          438 RE-------------HS--------KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN-------  489 (564)
Q Consensus       438 ~~-------------~~--------~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------  489 (564)
                      .+             ..        ..-..++++++|.         ++++-+.++.|++||..++.......       
T Consensus       779 gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~---------LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~  849 (1057)
T PLN02919        779 GGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ---------IYVADSYNHKIKKLDPATKRVTTLAGTGKAGFK  849 (1057)
T ss_pred             ecccccCcccccccCCCCchhhhhccCCceeeEeCCCc---------EEEEECCCCEEEEEECCCCeEEEEeccCCcCCC
Confidence            00             00        0113455555542         56677889999999998776543221       


Q ss_pred             ------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE
Q 008467          490 ------GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI  526 (564)
Q Consensus       490 ------~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~  526 (564)
                            +.-.....|+++++|+.+++-+.+++|++||+.+++.
T Consensus       850 dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        850 DGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             CCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence                  1112467899999999999989999999999998865

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.09  E-value=1.5e-07  Score=95.34  Aligned_cols=201  Identities=13%  Similarity=0.075  Sum_probs=121.0

Q ss_pred             eEEEEECCCceeEeecCCCCCEEEEEeCCCCCE-EEEeeCC---CcEEEEECCCcceeEEEeecccCeEEEEcCCCceEE
Q 008467          298 QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDY-LLTGSCD---KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA  373 (564)
Q Consensus       298 ~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (564)
                      .|.+-|.+|.....+.... .+...+|+|+|+. ++..+.+   ..|.++|+.+++....                    
T Consensus       170 ~l~~~d~dg~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~l--------------------  228 (419)
T PRK04043        170 NIVLADYTLTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKI--------------------  228 (419)
T ss_pred             eEEEECCCCCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEE--------------------
Confidence            4445456665444444343 7888999999985 5544433   3466667766542211                    


Q ss_pred             EEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEE-EEeCC--CcEEEEeCCCCeeeeecccccccEEEEEEc
Q 008467          374 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDD--VTAKIWNMKQDKYVHDLREHSKEIYTIRWS  450 (564)
Q Consensus       374 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~la-s~s~d--g~i~iwd~~~~~~~~~~~~~~~~i~~i~~~  450 (564)
                                            ....+......|+|||+.|+ +.+.+  ..|.++|+.++.. ..+..+........|+
T Consensus       229 ----------------------t~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~S  285 (419)
T PRK04043        229 ----------------------ASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFV  285 (419)
T ss_pred             ----------------------ecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEEC
Confidence                                  11223344577999998665 44444  4566778776653 3344343333456799


Q ss_pred             cCCCCCCCCCCcEEEEEEeCCC--eEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC---------CcEEEE
Q 008467          451 PTGSGTNNPNQQLILASASFDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD---------KSMHIW  519 (564)
Q Consensus       451 p~~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~d---------g~i~iw  519 (564)
                      |+|.        .++++....+  .|.++|+..++...... ...  ....|||||++||..+..         ..|.+.
T Consensus       286 PDG~--------~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~  354 (419)
T PRK04043        286 EDDK--------RIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLI  354 (419)
T ss_pred             CCCC--------EEEEEECCCCCceEEEEECCCCCeEeCcc-CCC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEE
Confidence            9885        2444443333  67888888776532221 111  224899999999866543         368888


Q ss_pred             eCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcC
Q 008467          520 SLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN  554 (564)
Q Consensus       520 ~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~  554 (564)
                      ++.++.... +...+.....+|+|||+.|+.....
T Consensus       355 d~~~g~~~~-LT~~~~~~~p~~SPDG~~I~f~~~~  388 (419)
T PRK04043        355 STNSDYIRR-LTANGVNQFPRFSSDGGSIMFIKYL  388 (419)
T ss_pred             ECCCCCeEE-CCCCCCcCCeEECCCCCEEEEEEcc
Confidence            888876533 3333333468999999998877543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.07  E-value=3.2e-07  Score=83.18  Aligned_cols=246  Identities=17%  Similarity=0.229  Sum_probs=125.1

Q ss_pred             EEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 008467          222 CAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARI  301 (564)
Q Consensus       222 ~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~v  301 (564)
                      ++.+++|++||.- .|..|.|=...+.-          .. ....+... ......=.-++||||+.+||.+...|+|++
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf----------~s-i~~kcqVp-kD~~PQWRkl~WSpD~tlLa~a~S~G~i~v   69 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDF----------SS-IIGKCQVP-KDPNPQWRKLAWSPDCTLLAYAESTGTIRV   69 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCc----------hh-eeEEEecC-CCCCchheEEEECCCCcEEEEEcCCCeEEE
Confidence            4567889888864 56666664332210          00 01111111 111223467899999999999999999999


Q ss_pred             EECCCceeEeecCC-------CCCEEEEEeCCCC------CEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCC
Q 008467          302 WSTNGDLKCTLSKH-------KGPIFSLKWNKKG------DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN  368 (564)
Q Consensus       302 w~~~~~~~~~~~~h-------~~~V~~l~~~~~~------~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  368 (564)
                      +|..|.....+..-       ..+|.++.|.+-.      ..|+....+|.++-|-+..                     
T Consensus        70 fdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~---------------------  128 (282)
T PF15492_consen   70 FDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSV---------------------  128 (282)
T ss_pred             EecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEc---------------------
Confidence            99887655544331       1234444443211      0122222222222221100                     


Q ss_pred             CceEEEEeCCCeEEEEEcCCCceeeEecC-CCcceEEEEECCCCCEEEEEeCCCc-EEEEeCCCCeeeeecccccccEEE
Q 008467          369 NVSFATSSTDNMIYVCKIGENRPIKTFAG-HQGEVNCVKWDPTGSLLASCSDDVT-AKIWNMKQDKYVHDLREHSKEIYT  446 (564)
Q Consensus       369 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-h~~~i~~v~~~~~~~~las~s~dg~-i~iwd~~~~~~~~~~~~~~~~i~~  446 (564)
                            +...+....       ....|.. +...|+++.|+|..++|+.|+.... -..+.           +....++ 
T Consensus       129 ------gt~q~y~e~-------hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~-----------a~~~GLt-  183 (282)
T PF15492_consen  129 ------GTNQGYQEN-------HSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSK-----------ASSCGLT-  183 (282)
T ss_pred             ------ccCCcceee-------EEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcccc-----------ccccCce-
Confidence                  000111000       0112222 3567999999999998877765322 00000           0111111 


Q ss_pred             EEEccCCCCCCCCCCcEEEEEEeCCCe------EEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008467          447 IRWSPTGSGTNNPNQQLILASASFDST------VKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS  520 (564)
Q Consensus       447 i~~~p~~~~~~~~~~~~~l~s~s~dg~------i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~  520 (564)
                       +|..-..   .|  .+..++...|+.      -.+|.+-+.+...........|..|+.||||+.||+...+|.|.+|+
T Consensus       184 -aWRiL~~---~P--yyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~  257 (282)
T PF15492_consen  184 -AWRILSD---SP--YYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWE  257 (282)
T ss_pred             -EEEEcCC---CC--cEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEe
Confidence             1211110   00  011222222221      12333332222111122356799999999999999999999999999


Q ss_pred             CCCCeEEEEEec
Q 008467          521 LKEGKIVKTYTG  532 (564)
Q Consensus       521 ~~~~~~~~~~~~  532 (564)
                      +..-++.+.+.-
T Consensus       258 iPsL~~~~~W~~  269 (282)
T PF15492_consen  258 IPSLRLQRSWKQ  269 (282)
T ss_pred             cCcchhhcccch
Confidence            998777776643

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=8.4e-09  Score=98.09  Aligned_cols=267  Identities=16%  Similarity=0.273  Sum_probs=185.2

Q ss_pred             ECCCCCEEEEEeCCCeEEEEECCC----ceeEeecCCCCCEEEEEeCCCCCEEEEeeC-CCcEEEEECCCcceeEEEeec
Q 008467          283 WNGEGTLLATGSYDGQARIWSTNG----DLKCTLSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQQFEFH  357 (564)
Q Consensus       283 ~s~~g~~l~sg~~dg~i~vw~~~~----~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~  357 (564)
                      +-...+++.+++.||.++.|....    .....+..|.+.|.+++.+.++..+.|++. |..++++|+..-..+.-+...
T Consensus        16 ~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~   95 (558)
T KOG0882|consen   16 FPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLV   95 (558)
T ss_pred             eeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccc
Confidence            344568999999999999998654    233456778899999999999999999776 999999998765544322221


Q ss_pred             ccCeEEEEcCC--C---ceE-EEEeCCCeEEEEEcCCCc-eeeEe-cCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 008467          358 SGPTLDVDWRN--N---VSF-ATSSTDNMIYVCKIGENR-PIKTF-AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK  429 (564)
Q Consensus       358 ~~~~~~~~~~~--~---~~~-~~~~~d~~i~~~~~~~~~-~~~~~-~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~  429 (564)
                      .-| -.++|..  .   ..+ ++.-.++.+.++|-.... +...+ .-|..+|.++.+++.+..++|....|.|.-|...
T Consensus        96 ~lP-g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e  174 (558)
T KOG0882|consen   96 DLP-GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAE  174 (558)
T ss_pred             cCC-CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCC
Confidence            111 1223322  1   123 333457788888865443 33333 3588999999999999999999999999999876


Q ss_pred             C------Ceeee---------ecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEe-----
Q 008467          430 Q------DKYVH---------DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN-----  489 (564)
Q Consensus       430 ~------~~~~~---------~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-----  489 (564)
                      .      .+...         .+........++.|+|++.         .+.+-+.|..|++++..+|+++..+.     
T Consensus       175 ~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~---------qistl~~DrkVR~F~~KtGklvqeiDE~~t~  245 (558)
T KOG0882|consen  175 GPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA---------QISTLNPDRKVRGFVFKTGKLVQEIDEVLTD  245 (558)
T ss_pred             CcccCccccccccccccchhhcccccccCccceEEccccC---------cccccCcccEEEEEEeccchhhhhhhccchh
Confidence            3      11111         1122334567889999886         46677789999999999887654332     


Q ss_pred             ---------------------------CCC-CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCE-----
Q 008467          490 ---------------------------GHR-EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGI-----  536 (564)
Q Consensus       490 ---------------------------~h~-~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i-----  536 (564)
                                                 .|. ..-+.+.|...|++|.-|+.=| |++.++.++.+++.+-....|     
T Consensus       246 ~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk~e~ir~~~~  324 (558)
T KOG0882|consen  246 AQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGKDEAIRFTRL  324 (558)
T ss_pred             hhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEeccchhhhhhhH
Confidence                                       111 2345688999999999988877 999999999988776311000     


Q ss_pred             ---------------------EEEEEccCCCEEEEEEcCCcEEEE
Q 008467          537 ---------------------FEVCWNKEGDKIAACFANHTVCVL  560 (564)
Q Consensus       537 ---------------------~~~~w~~~g~~la~~~~~~~v~v~  560 (564)
                                           ..+.+.+|-..+++++...+..++
T Consensus       325 sl~q~~~k~~~~~~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf  369 (558)
T KOG0882|consen  325 SLYQGAQKSNLAALEVAASNNPLLEFQKDPTIVCTAFKKNRFYLF  369 (558)
T ss_pred             HHHhhhhhccchhhhhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence                                 124477788888888877666655

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.04  E-value=2.6e-06  Score=79.80  Aligned_cols=258  Identities=15%  Similarity=0.212  Sum_probs=162.0

Q ss_pred             CCeEEEEECCC---ce-eEeecCCCCCEEEEEeCCCCCEEEEeeCC---CcEEEEECC--Cccee--EEEeecccCeEEE
Q 008467          296 DGQARIWSTNG---DL-KCTLSKHKGPIFSLKWNKKGDYLLTGSCD---KTAIVWDVK--TEEWK--QQFEFHSGPTLDV  364 (564)
Q Consensus       296 dg~i~vw~~~~---~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~D---~~v~iwd~~--~~~~~--~~~~~~~~~~~~~  364 (564)
                      +..|.+|+++.   .+ ...+..+.+.++-|+|+|++++|+++..+   |.|..|.+.  .|.+.  ........+..-+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            46789998652   22 12334566777889999999999988765   566666544  35432  2222222232333


Q ss_pred             EcC--CCceEEEEeCCCeEEEEEcCCCce---eeEecCCCcc----------eEEEEECCCCCEEEEEeC-CCcEEEEeC
Q 008467          365 DWR--NNVSFATSSTDNMIYVCKIGENRP---IKTFAGHQGE----------VNCVKWDPTGSLLASCSD-DVTAKIWNM  428 (564)
Q Consensus       365 ~~~--~~~~~~~~~~d~~i~~~~~~~~~~---~~~~~~h~~~----------i~~v~~~~~~~~las~s~-dg~i~iwd~  428 (564)
                      +..  ....|.+.-..+.|.++.++....   ......|.+.          +-+..+.|++++|+++.- --.|.+|++
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~  174 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL  174 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence            333  334455555678899998865321   2122234443          778999999999988764 336899999


Q ss_pred             CCCeeee----ecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEEeC---------CCCC
Q 008467          429 KQDKYVH----DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNG---------HREP  494 (564)
Q Consensus       429 ~~~~~~~----~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~---------h~~~  494 (564)
                      ..+....    .+ .....-.-|.|+|++.        ..-+.+=.+++|-+|..... ..+..+..         ....
T Consensus       175 ~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k--------~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~  245 (346)
T COG2706         175 DDGKLTPADPAEV-KPGAGPRHIVFHPNGK--------YAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNW  245 (346)
T ss_pred             ccCcccccccccc-CCCCCcceEEEcCCCc--------EEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCc
Confidence            8665421    12 2233346788888775        34445667899999998763 22222221         1234


Q ss_pred             EEEEEEcCCCCEEEEEeC-CCcEEEEeCCC--CeE--EEEEecCCC-EEEEEEccCCCEEEEEEcCC-cEEEEEe
Q 008467          495 VYSLAFSPTGEYLASGSL-DKSMHIWSLKE--GKI--VKTYTGNGG-IFEVCWNKEGDKIAACFANH-TVCVLDF  562 (564)
Q Consensus       495 i~~~~~spdg~~lasgs~-dg~i~iw~~~~--~~~--~~~~~~~~~-i~~~~w~~~g~~la~~~~~~-~v~v~~~  562 (564)
                      .-.|..+|||+||.++.. ...|-+|.+..  |++  +......+. ..++.++++|++|+++..++ .+.||-.
T Consensus       246 ~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~  320 (346)
T COG2706         246 AAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFER  320 (346)
T ss_pred             eeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEE
Confidence            678899999999988753 34788888753  332  233333333 67899999999999887654 5677654

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.03  E-value=2.5e-07  Score=93.47  Aligned_cols=259  Identities=10%  Similarity=0.056  Sum_probs=157.6

Q ss_pred             CCEEEEEeCCCeEEEEEC-CCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEE
Q 008467          287 GTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD  365 (564)
Q Consensus       287 g~~l~sg~~dg~i~vw~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~  365 (564)
                      +..+++++.+|.+..+|. +|+......-......+..  .++..++.++.++.+..+|..+++.+-....... +....
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~p  141 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSE-VLSPP  141 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCce-eecCC
Confidence            567888888999999995 5665544332221111121  2467888899999999999999987655443221 11110


Q ss_pred             cCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcce-----EEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccc
Q 008467          366 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEV-----NCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH  440 (564)
Q Consensus       366 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i-----~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~  440 (564)
                      -..+..++.+..++.++.++..+++.+-.+......+     .+....  +..++.++.++.+..+|..+++.+......
T Consensus       142 ~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~  219 (377)
T TIGR03300       142 LVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVA  219 (377)
T ss_pred             EEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccc
Confidence            1123455566778999999998877665544322111     111111  246778888999999999888765432211


Q ss_pred             cc----cE---EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC
Q 008467          441 SK----EI---YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD  513 (564)
Q Consensus       441 ~~----~i---~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~d  513 (564)
                      ..    .+   ..+.-+|.     . .+. .+..++.+|.+..||..+|+.++..... . ....  ..++..++.++.|
T Consensus       220 ~~~g~~~~~~~~~~~~~p~-----~-~~~-~vy~~~~~g~l~a~d~~tG~~~W~~~~~-~-~~~p--~~~~~~vyv~~~~  288 (377)
T TIGR03300       220 LPKGRTELERLVDVDGDPV-----V-DGG-QVYAVSYQGRVAALDLRSGRVLWKRDAS-S-YQGP--AVDDNRLYVTDAD  288 (377)
T ss_pred             cCCCCCchhhhhccCCccE-----E-ECC-EEEEEEcCCEEEEEECCCCcEEEeeccC-C-ccCc--eEeCCEEEEECCC
Confidence            00    00   00000010     0 011 4556778999999999999988776521 1 1122  2356778888899


Q ss_pred             CcEEEEeCCCCeEEEEEec-CCC-EEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          514 KSMHIWSLKEGKIVKTYTG-NGG-IFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       514 g~i~iw~~~~~~~~~~~~~-~~~-i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      |.|..+|..+|+.+..+.. ... ......  .|.+|.++..+|.+.++|.+
T Consensus       289 G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~  338 (377)
T TIGR03300       289 GVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSRE  338 (377)
T ss_pred             CeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECC
Confidence            9999999999998876532 111 122222  46788888899999888753

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=99.01  E-value=4.6e-07  Score=96.74  Aligned_cols=273  Identities=11%  Similarity=0.216  Sum_probs=155.5

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEe
Q 008467          276 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE  355 (564)
Q Consensus       276 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~  355 (564)
                      ..|.++.|-.+++.++.+...|.|.+-|...........-.+.|.+++|+|++..++..+.++++.+-+- +-..+....
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~i~E~~  147 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTK-DFEPIAEKP  147 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEec-cccchhccc
Confidence            5799999999999999999999999998776655555566788999999999999998888888776431 111111000


Q ss_pred             e-----cccCeEEEEcCCCceEEEEeCCCeEEEEE-cCCCceeeEecCCCcceEEEEECCCCCEEEEE-----eCCCcEE
Q 008467          356 F-----HSGPTLDVDWRNNVSFATSSTDNMIYVCK-IGENRPIKTFAGHQGEVNCVKWDPTGSLLASC-----SDDVTAK  424 (564)
Q Consensus       356 ~-----~~~~~~~~~~~~~~~~~~~~~d~~i~~~~-~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~-----s~dg~i~  424 (564)
                      .     ..+....+.|.....-.-++... ..-.. +...+......-|. .=++|.|--||.++|+.     .....|+
T Consensus       148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr-~~~~~~~~~ek~~~~~~~~~-~~~~IsWRgDg~~fAVs~~~~~~~~Rkir  225 (1265)
T KOG1920|consen  148 LDADDERKSKFVNVGWGRKETQFRGSEGR-QAARQKIEKEKALEQIEQDD-HKTSISWRGDGEYFAVSFVESETGTRKIR  225 (1265)
T ss_pred             cccccccccccceecccccceeeecchhh-hcccccccccccccchhhcc-CCceEEEccCCcEEEEEEEeccCCceeEE
Confidence            0     11122333342211111110000 00000 00000000000122 22468999999999883     3337999


Q ss_pred             EEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEE---eCCCeEEEEeCC---CCeEEEEEeCCCCCEEEE
Q 008467          425 IWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASA---SFDSTVKLWDVE---LGKLLYSLNGHREPVYSL  498 (564)
Q Consensus       425 iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~---s~dg~i~iwd~~---~~~~~~~~~~h~~~i~~~  498 (564)
                      +||.. +..-..-..-.+.-.++.|-|.|.         ++++-   ..|+.|.+|.-.   -|.....+.....+|..+
T Consensus       226 V~drE-g~Lns~se~~~~l~~~LsWkPsgs---------~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L  295 (1265)
T KOG1920|consen  226 VYDRE-GALNSTSEPVEGLQHSLSWKPSGS---------LIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEEL  295 (1265)
T ss_pred             Eeccc-chhhcccCcccccccceeecCCCC---------eEeeeeecCCCCcEEEEecCCccccccccCCcccccchhee
Confidence            99966 322111111223346789999876         44442   345678888632   122222222233458999


Q ss_pred             EEcCCCCEEEE---EeCCCcEEEEeCCCCe--EEEEEecCCCEEEEEEccCCC-EEEEEEcCCcEEEEEe
Q 008467          499 AFSPTGEYLAS---GSLDKSMHIWSLKEGK--IVKTYTGNGGIFEVCWNKEGD-KIAACFANHTVCVLDF  562 (564)
Q Consensus       499 ~~spdg~~las---gs~dg~i~iw~~~~~~--~~~~~~~~~~i~~~~w~~~g~-~la~~~~~~~v~v~~~  562 (564)
                      +|+.++..||+   ......|++|-+.+..  +.+.+.-..... +.|+|.-. .|.+-..+|...|+||
T Consensus       296 ~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~-~~W~p~~~~~L~v~~~sG~~~v~~~  364 (1265)
T KOG1920|consen  296 AWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL-LMWDPVTEKTLHVLRESGQRLVRDF  364 (1265)
T ss_pred             eecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc-ccccCCCceeEEEEecCCcEEEEEE
Confidence            99999999997   4445569999998764  223333222222 77887432 2222225666666665

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.98  E-value=6.9e-06  Score=77.00  Aligned_cols=252  Identities=15%  Similarity=0.266  Sum_probs=156.9

Q ss_pred             CccceEEEEECCCCCEEEEEECC---CcEEEEeCCC--CCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE
Q 008467          215 HTSEVCACAWSPAGSLLASGSGD---STARIWTIAD--GTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL  289 (564)
Q Consensus       215 h~~~V~~~~~sp~~~~lasgs~D---~~i~iW~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~  289 (564)
                      +...++=++|+|+.+.|.++-.+   |.|.-|.+..  |.         +.  .+.+    .....++-+.++.+++|++
T Consensus        38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~---------Lt--~ln~----~~~~g~~p~yvsvd~~g~~  102 (346)
T COG2706          38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGR---------LT--FLNR----QTLPGSPPCYVSVDEDGRF  102 (346)
T ss_pred             ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCe---------EE--Eeec----cccCCCCCeEEEECCCCCE
Confidence            44556778999999999988654   6677666653  21         11  1111    1111233378899999999


Q ss_pred             EEEEeCC-CeEEEEECC--CceeE--eecCCCCC----------EEEEEeCCCCCEEEEeeCC-CcEEEEECCCcceeEE
Q 008467          290 LATGSYD-GQARIWSTN--GDLKC--TLSKHKGP----------IFSLKWNKKGDYLLTGSCD-KTAIVWDVKTEEWKQQ  353 (564)
Q Consensus       290 l~sg~~d-g~i~vw~~~--~~~~~--~~~~h~~~----------V~~l~~~~~~~~l~s~s~D-~~v~iwd~~~~~~~~~  353 (564)
                      ++++.+. |.|.++-.+  |.+..  ....|.++          +....+.|++++|++.+.. -.|.+|++..+.+...
T Consensus       103 vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~  182 (346)
T COG2706         103 VFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPA  182 (346)
T ss_pred             EEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccc
Confidence            9999875 788998653  43322  23345555          8889999999999887642 3578888775543221


Q ss_pred             EeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC-CCcEEEEeCCCC-
Q 008467          354 FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAKIWNMKQD-  431 (564)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~-dg~i~iwd~~~~-  431 (564)
                      -..                                     .+ .-...-+-|.|+|++++.....+ +++|.+|..+.. 
T Consensus       183 ~~~-------------------------------------~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~  224 (346)
T COG2706         183 DPA-------------------------------------EV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAV  224 (346)
T ss_pred             ccc-------------------------------------cc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCC
Confidence            100                                     00 11123456899999999877666 999999998763 


Q ss_pred             eeeeecccc---------cccEEEEEEccCCCCCCCCCCcEEEEEE-eCCCeEEEEeCCC--CeEE--EEEeCCCCCEEE
Q 008467          432 KYVHDLREH---------SKEIYTIRWSPTGSGTNNPNQQLILASA-SFDSTVKLWDVEL--GKLL--YSLNGHREPVYS  497 (564)
Q Consensus       432 ~~~~~~~~~---------~~~i~~i~~~p~~~~~~~~~~~~~l~s~-s~dg~i~iwd~~~--~~~~--~~~~~h~~~i~~  497 (564)
                      ..+..++.+         ....-.|..+|+|+         +|.++ =....|-+|.+..  +++.  .....+...-..
T Consensus       225 g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGr---------FLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~  295 (346)
T COG2706         225 GKFEELQTIDTLPEDFTGTNWAAAIHISPDGR---------FLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRD  295 (346)
T ss_pred             ceEEEeeeeccCccccCCCCceeEEEECCCCC---------EEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCcc
Confidence            222222221         23456677788775         33333 2234677777653  3322  122233344578


Q ss_pred             EEEcCCCCEEEEEeCC-CcEEEEeCC--CCeEEE
Q 008467          498 LAFSPTGEYLASGSLD-KSMHIWSLK--EGKIVK  528 (564)
Q Consensus       498 ~~~spdg~~lasgs~d-g~i~iw~~~--~~~~~~  528 (564)
                      ..|+|+|++|+++..+ ..|.+|.+.  +|.+-.
T Consensus       296 F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~  329 (346)
T COG2706         296 FNINPSGRFLIAANQKSDNITVFERDKETGRLTL  329 (346)
T ss_pred             ceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEe
Confidence            8999999999988765 468888764  555543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.97  E-value=5.9e-06  Score=78.03  Aligned_cols=222  Identities=15%  Similarity=0.169  Sum_probs=144.3

Q ss_pred             EEEECC-CCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeC-CCCCEEEEeeCCCcEEEEECCCcceeEEEeec
Q 008467          280 TLDWNG-EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWN-KKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH  357 (564)
Q Consensus       280 ~l~~s~-~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~-~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~  357 (564)
                      +..|.+ ++.++++-...+.|..|+..+.....+....  ..++.+. ++ ..|+.+..++ +.++|+.++++...+...
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~~   79 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADLP   79 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS--EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC--CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeecc
Confidence            467887 7778888778899999998877655443333  5667777 55 4555555544 455588877543322110


Q ss_pred             ccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecC-CCcceEEEEECCCCCEEEEEeCC--------CcEEEEeC
Q 008467          358 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG-HQGEVNCVKWDPTGSLLASCSDD--------VTAKIWNM  428 (564)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-h~~~i~~v~~~~~~~~las~s~d--------g~i~iwd~  428 (564)
                      .                                     .. .....+.++++|+|++.++.+..        |.+..++.
T Consensus        80 ~-------------------------------------~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~  122 (246)
T PF08450_consen   80 D-------------------------------------GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDP  122 (246)
T ss_dssp             T-------------------------------------TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEET
T ss_pred             C-------------------------------------CCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECC
Confidence            0                                     01 22357789999999988877654        44666666


Q ss_pred             CCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC--C-----eEEEEEeCCCCCEEEEEEc
Q 008467          429 KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL--G-----KLLYSLNGHREPVYSLAFS  501 (564)
Q Consensus       429 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~--~-----~~~~~~~~h~~~i~~~~~s  501 (564)
                      . ++. ..+...-.....|+|+|++.        .++++-+..+.|..+++..  +     +....+.........+++.
T Consensus       123 ~-~~~-~~~~~~~~~pNGi~~s~dg~--------~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD  192 (246)
T PF08450_consen  123 D-GKV-TVVADGLGFPNGIAFSPDGK--------TLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVD  192 (246)
T ss_dssp             T-SEE-EEEEEEESSEEEEEEETTSS--------EEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEB
T ss_pred             C-CeE-EEEecCcccccceEECCcch--------heeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEc
Confidence            5 332 22222334457899999875        3556778889999998853  2     1122233222237889999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC-CCEEEEEE-ccCCCEEEEEEc
Q 008467          502 PTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCW-NKEGDKIAACFA  553 (564)
Q Consensus       502 pdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~-~~i~~~~w-~~~g~~la~~~~  553 (564)
                      .+|++.++.-..+.|.+++.. |+++..+... ..+++++| -++.+.|.+.++
T Consensus       193 ~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  193 SDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             TTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred             CCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence            999998888888999999987 8888877665 57899999 467777766543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.95  E-value=5.4e-07  Score=91.28  Aligned_cols=193  Identities=13%  Similarity=0.053  Sum_probs=114.3

Q ss_pred             CeEEEEECCCCCE-EEEEeCC---CeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEE-eeCCC--cEEEEECCCcc
Q 008467          277 DVTTLDWNGEGTL-LATGSYD---GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLT-GSCDK--TAIVWDVKTEE  349 (564)
Q Consensus       277 ~V~~l~~s~~g~~-l~sg~~d---g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s-~s~D~--~v~iwd~~~~~  349 (564)
                      .+....|||||+. ++..+.+   ..|.+++..+.....+....+.+....|+|+|+.++. .+.++  .|.++|+.++.
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~  268 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT  268 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence            4667899999984 6655544   4677778766555555556666777889999987764 33332  34444544433


Q ss_pred             eeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC-CC--cEEEE
Q 008467          350 WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DV--TAKIW  426 (564)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~-dg--~i~iw  426 (564)
                      ..                                          .+..+.+......|+|||+.|+-.++ .+  .|.+.
T Consensus       269 ~~------------------------------------------~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~  306 (419)
T PRK04043        269 LT------------------------------------------QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMK  306 (419)
T ss_pred             EE------------------------------------------EcccCCCccCccEECCCCCEEEEEECCCCCceEEEE
Confidence            21                                          11112222224579999987766654 34  46667


Q ss_pred             eCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC--------CeEEEEeCCCCeEEEEEeCCCCCEEEE
Q 008467          427 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD--------STVKLWDVELGKLLYSLNGHREPVYSL  498 (564)
Q Consensus       427 d~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~h~~~i~~~  498 (564)
                      |+.++.... +.....  ....|+|+|.        .++.+....        ..|.+.|+..+.. ..+... ......
T Consensus       307 dl~~g~~~r-lt~~g~--~~~~~SPDG~--------~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p  373 (419)
T PRK04043        307 KLNSGSVEQ-VVFHGK--NNSSVSTYKN--------YIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFP  373 (419)
T ss_pred             ECCCCCeEe-CccCCC--cCceECCCCC--------EEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCe
Confidence            777665532 221111  2248999886        234443332        3688888887754 344432 233458


Q ss_pred             EEcCCCCEEEEEeCC---CcEEEEeCCCC
Q 008467          499 AFSPTGEYLASGSLD---KSMHIWSLKEG  524 (564)
Q Consensus       499 ~~spdg~~lasgs~d---g~i~iw~~~~~  524 (564)
                      +|||||++|+-.+.+   ..+.+.++...
T Consensus       374 ~~SPDG~~I~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        374 RFSSDGGSIMFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             EECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence            899999988765543   23666666543

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.95  E-value=2.7e-08  Score=91.60  Aligned_cols=237  Identities=15%  Similarity=0.286  Sum_probs=155.5

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEECCC--ce-eEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEEC----CC
Q 008467          275 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNG--DL-KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV----KT  347 (564)
Q Consensus       275 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~--~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~----~~  347 (564)
                      ...|+....-|...-+++.+.|.++|||-...  +. .........+++++.+++....|+.|-..|++.-+.+    +.
T Consensus        24 ~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnk  103 (404)
T KOG1409|consen   24 QDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNK  103 (404)
T ss_pred             hhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhh
Confidence            44566666666667789999999999995322  11 1122334678899999999999999999999988854    34


Q ss_pred             cceeEEEeecccCeEEEEcCCC-ceEEEEeCCCeE-EEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEE
Q 008467          348 EEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMI-YVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI  425 (564)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i-~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~i  425 (564)
                      ....+.+..|...+..+-+.-. ..+++.+.|..+ +.+.- .+..+..+.- ....+++.+.-.  +...|...|.|.+
T Consensus       104 m~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e-~~~~lg~Y~~-~~~~t~~~~d~~--~~fvGd~~gqvt~  179 (404)
T KOG1409|consen  104 MTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTE-SGNRLGGYNF-ETPASALQFDAL--YAFVGDHSGQITM  179 (404)
T ss_pred             cchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeec-cCCcccceEe-eccCCCCceeeE--EEEecccccceEE
Confidence            4555566667777766655433 333444444433 22211 1111111000 001111111111  3334444555544


Q ss_pred             EeC--CCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-EEEEEeCCCCCEEEEEEcC
Q 008467          426 WNM--KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-LLYSLNGHREPVYSLAFSP  502 (564)
Q Consensus       426 wd~--~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~h~~~i~~~~~sp  502 (564)
                      -.+  ..-.++.++.+|...++++.|.|...         +|.+|..|..|.+||+.-.+ ..+.+.+|...|..+.+-+
T Consensus       180 lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~---------~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~  250 (404)
T KOG1409|consen  180 LKLEQNGCQLITTFNGHTGEVTCLKWDPGQR---------LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ  250 (404)
T ss_pred             EEEeecCCceEEEEcCcccceEEEEEcCCCc---------EEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh
Confidence            332  34456778899999999999988653         79999999999999987443 3467888999999999988


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCC
Q 008467          503 TGEYLASGSLDKSMHIWSLKEG  524 (564)
Q Consensus       503 dg~~lasgs~dg~i~iw~~~~~  524 (564)
                      --+.|.+++.||.|.+|+.+..
T Consensus       251 ~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  251 HTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             hheeeeeccCCCeEEEEeccce
Confidence            8899999999999999998643

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.91  E-value=7.5e-07  Score=85.63  Aligned_cols=214  Identities=14%  Similarity=0.208  Sum_probs=149.5

Q ss_pred             eCCCCCEEEEeeCCCcEEEEECCCcceeEEEeec-------ccCe--------EEEEcCCCceEEEEeCCCeEEEEEcCC
Q 008467          324 WNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH-------SGPT--------LDVDWRNNVSFATSSTDNMIYVCKIGE  388 (564)
Q Consensus       324 ~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-------~~~~--------~~~~~~~~~~~~~~~~d~~i~~~~~~~  388 (564)
                      .+.+|+.++- +..|.|.++|..+..+.. ++..       ..+.        -+....+...++..| .|..++.+...
T Consensus       274 ~nsDGkrIvF-q~~GdIylydP~td~lek-ldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~  350 (668)
T COG4946         274 ANSDGKRIVF-QNAGDIYLYDPETDSLEK-LDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWD  350 (668)
T ss_pred             cCCCCcEEEE-ecCCcEEEeCCCcCccee-eecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCC
Confidence            3567887765 345789999988765433 1111       0000        011122233333332 34455555444


Q ss_pred             CceeeEecCCCcceEEEEECCCCCEEEEEeCCC-cEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEE
Q 008467          389 NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV-TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAS  467 (564)
Q Consensus       389 ~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg-~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s  467 (564)
                      +-.++  .+|.+.|.-..+.-+++-++.|..|| .+-|+|..+++. ..+...-+.|.++..+|+|.         .++.
T Consensus       351 ~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK---------~~vv  418 (668)
T COG4946         351 GYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGK---------KVVV  418 (668)
T ss_pred             CeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCc---------EEEE
Confidence            43333  36777788888888888899999999 899999988764 34455667899999999986         5777


Q ss_pred             EeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEeCCCCeEEEEEecCCCEEEEEEcc
Q 008467          468 ASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD----KSMHIWSLKEGKIVKTYTGNGGIFEVCWNK  543 (564)
Q Consensus       468 ~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~d----g~i~iw~~~~~~~~~~~~~~~~i~~~~w~~  543 (564)
                      +.....|-+.|+.+|.....-+...+-|+..+|||+++|||-+--+    ..|+++|..++++....+..+--++.+|+|
T Consensus       419 aNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~  498 (668)
T COG4946         419 ANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDP  498 (668)
T ss_pred             EcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCC
Confidence            8778889899999998754444455679999999999999976554    479999999999887766666667889999


Q ss_pred             CCCEEEEEE
Q 008467          544 EGDKIAACF  552 (564)
Q Consensus       544 ~g~~la~~~  552 (564)
                      ||++|-.-+
T Consensus       499 d~ryLYfLs  507 (668)
T COG4946         499 DGRYLYFLS  507 (668)
T ss_pred             CCcEEEEEe
Confidence            999776543

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.90  E-value=2.5e-08  Score=100.40  Aligned_cols=290  Identities=20%  Similarity=0.331  Sum_probs=180.2

Q ss_pred             cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC--CEEEEEe
Q 008467          217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG--TLLATGS  294 (564)
Q Consensus       217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g--~~l~sg~  294 (564)
                      .++.++..+|.|+-+|.++.-|... -|+...-.       |.  ..+.+..      .-.|-.+.||+..  .+-++..
T Consensus        25 ~~~~a~si~p~grdi~lAsr~gl~i-~dld~p~~-------pp--r~l~h~t------pw~vad~qws~h~a~~~wiVst   88 (1081)
T KOG0309|consen   25 GGFNAVSINPSGRDIVLASRQGLYI-IDLDDPFT-------PP--RWLHHIT------PWQVADVQWSPHPAKPYWIVST   88 (1081)
T ss_pred             CcccceeeccccchhhhhhhcCeEE-EeccCCCC-------Cc--eeeeccC------cchhcceecccCCCCceeEEec
Confidence            5678899999999888888766543 35433210       10  1111111      1235566777643  3334444


Q ss_pred             CCCeEEEEECC----CceeEeecCCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCccee-EEEeecccCeEEEEcCC
Q 008467          295 YDGQARIWSTN----GDLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWK-QQFEFHSGPTLDVDWRN  368 (564)
Q Consensus       295 ~dg~i~vw~~~----~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~  368 (564)
                      ......+|+..    ..+...+.+|..+|+.+.|+|+.. .+++++.|-.+-.||+++-... -.+.........+.|..
T Consensus        89 s~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwny  168 (1081)
T KOG0309|consen   89 SNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNY  168 (1081)
T ss_pred             CcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecc
Confidence            45566688753    234556789999999999999764 5789999999999999875422 22222222333455543


Q ss_pred             C-ceEEEEeCCCeEEEEEcCCC-ceeeEecCCCcceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCeee-eecccccccE
Q 008467          369 N-VSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKYV-HDLREHSKEI  444 (564)
Q Consensus       369 ~-~~~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~i~~v~~~~~-~~~las~s~dg~i~iwd~~~~~~~-~~~~~~~~~i  444 (564)
                      . ....+++-.+.|++|+.+.+ .|+..+++|...|+.++|+.- ...+.+++.||+++.||....... .......-+|
T Consensus       169 k~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~pi  248 (1081)
T KOG0309|consen  169 KDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPI  248 (1081)
T ss_pred             cCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcc
Confidence            2 23344556677999998765 578889999999999998753 356789999999999997543211 1111233456


Q ss_pred             EEEEEccCCCCCCC-C--CCcEEEEEEeCCCeEEEEeCCC-CeEEEEEeCCCCCEEEEEEcCCC----------CEEEEE
Q 008467          445 YTIRWSPTGSGTNN-P--NQQLILASASFDSTVKLWDVEL-GKLLYSLNGHREPVYSLAFSPTG----------EYLASG  510 (564)
Q Consensus       445 ~~i~~~p~~~~~~~-~--~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~h~~~i~~~~~spdg----------~~lasg  510 (564)
                      ..-++-|-|.+... |  ....+.. --.+..-..|++.+ .+.++++.||.+.|...-|-..+          -.|+|=
T Consensus       249 w~~r~~Pfg~g~~~mp~~G~n~v~~-~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTW  327 (1081)
T KOG0309|consen  249 WRGRYLPFGEGYCIMPMVGGNMVPQ-LRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTW  327 (1081)
T ss_pred             eeccccccCceeEeccccCCeeeee-ccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEe
Confidence            66666676643210 0  0001111 11123334455543 36789999999887665554322          258999


Q ss_pred             eCCCcEEEEeCCC
Q 008467          511 SLDKSMHIWSLKE  523 (564)
Q Consensus       511 s~dg~i~iw~~~~  523 (564)
                      |.|..+++|-+.+
T Consensus       328 SkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  328 SKDQTLRLWPIDS  340 (1081)
T ss_pred             ecCCceEeeeccH
Confidence            9999999998764

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.89  E-value=1.3e-07  Score=85.92  Aligned_cols=275  Identities=17%  Similarity=0.297  Sum_probs=158.1

Q ss_pred             cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCC-----CCCCCceEEEEEeeccccccCCCCeEEEEECCCC--CE
Q 008467          217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGG-----AQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG--TL  289 (564)
Q Consensus       217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g--~~  289 (564)
                      .-|+++.|...|.+|++|...|.+.++.-.....-..     .+........++.+     .....|..+.|-.++  ..
T Consensus        27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSl-----eieEKin~I~w~~~t~r~h  101 (460)
T COG5170          27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSL-----EIEEKINAIEWFDDTGRNH  101 (460)
T ss_pred             ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhc-----cHHHHhhheeeecCCCcce
Confidence            4578999999999999999889999997544321000     11111000001100     112347778887654  35


Q ss_pred             EEEEeCCCeEEEEECCCceeEee----------cCCCCCEEEEE------eCCCCCEEEEeeCCCcEEEEECCCcceeEE
Q 008467          290 LATGSYDGQARIWSTNGDLKCTL----------SKHKGPIFSLK------WNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ  353 (564)
Q Consensus       290 l~sg~~dg~i~vw~~~~~~~~~~----------~~h~~~V~~l~------~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~  353 (564)
                      ++..+.|.+|++|....+-....          ....+|+++.+      .+.... ++++ .  -.+++          
T Consensus       102 FLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~-iiaa-~--p~rvy----------  167 (460)
T COG5170         102 FLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDE-IIAA-K--PCRVY----------  167 (460)
T ss_pred             EEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccce-EEEe-c--cceec----------
Confidence            67778899999997543211111          01123333221      111111 1111 1  11111          


Q ss_pred             EeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCC---ceeeEecCCC-----cceEEEEECCCC-CEEEEEeCCCcEE
Q 008467          354 FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGEN---RPIKTFAGHQ-----GEVNCVKWDPTG-SLLASCSDDVTAK  424 (564)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~---~~~~~~~~h~-----~~i~~v~~~~~~-~~las~s~dg~i~  424 (564)
                      -..|.-.+.++.+..+..+..+..|-.|.+|.+...   -.+...+.|.     .-|++..|+|.. .++.-.+..|.|+
T Consensus       168 aNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik  247 (460)
T COG5170         168 ANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK  247 (460)
T ss_pred             cccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence            022333455666666666777777777777776432   1233334443     347889999964 5566778899999


Q ss_pred             EEeCCCCeee----------------eecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEE
Q 008467          425 IWNMKQDKYV----------------HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYS  487 (564)
Q Consensus       425 iwd~~~~~~~----------------~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~  487 (564)
                      +-|++.....                .-+..-...|..+.|+|.|+         ++++-+. -+|+|||++.. .++.+
T Consensus       248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngr---------yIlsRdy-ltvkiwDvnm~k~pikT  317 (460)
T COG5170         248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGR---------YILSRDY-LTVKIWDVNMAKNPIKT  317 (460)
T ss_pred             ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCc---------EEEEecc-ceEEEEecccccCCcee
Confidence            9999843211                01122335678889999886         5665543 68999999854 45666


Q ss_pred             EeCCC------------CCE---EEEEEcCCCCEEEEEeCCCcEEEEe
Q 008467          488 LNGHR------------EPV---YSLAFSPTGEYLASGSLDKSMHIWS  520 (564)
Q Consensus       488 ~~~h~------------~~i---~~~~~spdg~~lasgs~dg~i~iw~  520 (564)
                      +.-|.            ..|   ..+.||-|.+.+.+|+.....-||-
T Consensus       318 i~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp  365 (460)
T COG5170         318 IPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP  365 (460)
T ss_pred             echHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeec
Confidence            54332            234   3478998888888888776666665

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.87  E-value=5.8e-06  Score=79.71  Aligned_cols=307  Identities=18%  Similarity=0.208  Sum_probs=178.0

Q ss_pred             ECC-CCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCC-eEEE
Q 008467          224 WSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDG-QARI  301 (564)
Q Consensus       224 ~sp-~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg-~i~v  301 (564)
                      |++ +|.++|..|. |.+.|.+...+-.             ++      .++...|.-..+..+++-++.|..|| .+-|
T Consensus       327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~-------------iq------v~~~~~VrY~r~~~~~e~~vigt~dgD~l~i  386 (668)
T COG4946         327 FAVVNGDYIALVSR-GKAFIMRPWDGYS-------------IQ------VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGI  386 (668)
T ss_pred             hccCCCcEEEEEec-CcEEEECCCCCee-------------EE------cCCCCceEEEEEccCCcceEEeccCCceEEE
Confidence            555 5777777653 5566655433211             11      11234477777888888999999999 8999


Q ss_pred             EECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEe-CC--
Q 008467          302 WSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSS-TD--  378 (564)
Q Consensus       302 w~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d--  378 (564)
                      ++..+.....+...-+.|.+++.+++|++++.+.....+.+.|+.++.....-....+-+.++.|+++..|++-+ .+  
T Consensus       387 yd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy  466 (668)
T COG4946         387 YDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGY  466 (668)
T ss_pred             EecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcce
Confidence            999998888888888999999999999999999888899999999998766555566778999999988776543 33  


Q ss_pred             --CeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeee--cccccccEEEEEEccCCC
Q 008467          379 --NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPTGS  454 (564)
Q Consensus       379 --~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~--~~~~~~~i~~i~~~p~~~  454 (564)
                        ..|+++++..++....-. .++.=-+-+|.||+++|.--|.-    --|....+.+..  +..+..+...+    .+.
T Consensus       467 ~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs~R----sLdPs~Drv~fnf~f~~vskPylv~----L~~  537 (668)
T COG4946         467 YTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLSAR----SLDPSNDRVIFNFSFQRVSKPYLVV----LGR  537 (668)
T ss_pred             eeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcEEEEEecc----ccCCCCCeeEEEEEEeeeccceEEE----ecC
Confidence              357888888776543322 22222356899999987654431    112222222221  22233322111    111


Q ss_pred             CCCCCCCcEEEEEEeCCCeEEEEeCCCCeEE--------EEEeCCCCC-EEEEEEcCCC---CEEEEEeCCCcEEEEeCC
Q 008467          455 GTNNPNQQLILASASFDSTVKLWDVELGKLL--------YSLNGHREP-VYSLAFSPTG---EYLASGSLDKSMHIWSLK  522 (564)
Q Consensus       455 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--------~~~~~h~~~-i~~~~~spdg---~~lasgs~dg~i~iw~~~  522 (564)
                      +..+|-.+..=-.-+.+|.+-+=++......        ..+.+.... |.-.++--.|   .++-.+-.-|.+.+||++
T Consensus       538 g~~sP~~q~p~~~~~ea~e~dle~ie~r~eP~pVee~dY~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~l~~ydle  617 (668)
T COG4946         538 GYYSPFNQPPDEANSEAGEVDLEGIEDRVEPFPVEEGDYRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGRLEKYDLE  617 (668)
T ss_pred             CCCChhhcCchhcCccccceehhhhcccccccccCccceeEeeecCCCeEEEEEeeccchhhhhhcCCCccceEEEEecc
Confidence            1111111000001122233222211111000        001111111 2111111112   122223445778888887


Q ss_pred             CCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          523 EGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       523 ~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      +.+.. .+  ...+.++..|+||+++.+ -.++.+..+++.
T Consensus       618 tkk~~-e~--k~nvss~rlS~D~s~ilv-k~d~kl~~f~ve  654 (668)
T COG4946         618 TKKVE-EY--KDNVSSFRLSSDGSKILV-KLDGKLRLFDVE  654 (668)
T ss_pred             hhhHH-HH--hcccceEEEcCCCCEEEE-EeCCeEEEEecc
Confidence            65421 11  245789999999999998 678899999874

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.85  E-value=4.2e-09  Score=107.73  Aligned_cols=254  Identities=17%  Similarity=0.356  Sum_probs=172.4

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCC--cEEEEECCC-c
Q 008467          273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK--TAIVWDVKT-E  348 (564)
Q Consensus       273 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~--~v~iwd~~~-~  348 (564)
                      .+....+|++|+.+.+.|+.|+..|.|+++++. |.......+|.++|+-+.=+.+|..+++.+.-.  -..+|++.. +
T Consensus      1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~ 1178 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTG 1178 (1516)
T ss_pred             ccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcccccc
Confidence            345678999999999999999999999999975 555667889999999999999998877655443  467998754 3


Q ss_pred             ceeEEEeecccCeEEEEcCCCceEE-EEeCCCeEEEEEcCCCceeeEec-C---CCcceEEEEECCCCCEEEEEeCCCcE
Q 008467          349 EWKQQFEFHSGPTLDVDWRNNVSFA-TSSTDNMIYVCKIGENRPIKTFA-G---HQGEVNCVKWDPTGSLLASCSDDVTA  423 (564)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~i~~~~~~~~~~~~~~~-~---h~~~i~~v~~~~~~~~las~s~dg~i  423 (564)
                      ...+.|..    -..+.|.+...+. .+.......+||+.+..++.++- +   .+..-+++.|+|+.+++.   .||  
T Consensus      1179 ~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG-- 1249 (1516)
T KOG1832|consen 1179 GPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG-- 1249 (1516)
T ss_pred             Cccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--
Confidence            33333322    1234454444332 23333456789999988877742 2   223447899999999876   455  


Q ss_pred             EEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCC
Q 008467          424 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPT  503 (564)
Q Consensus       424 ~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spd  503 (564)
                      .+||.+....++.|...+         -.+.+.++|++..+++-      -.|||+++-+.+++...-.  -..|.|+..
T Consensus      1250 vLWDvR~~~aIh~FD~ft---------~~~~G~FHP~g~eVIIN------SEIwD~RTF~lLh~VP~Ld--qc~VtFNst 1312 (1516)
T KOG1832|consen 1250 VLWDVRIPEAIHRFDQFT---------DYGGGGFHPSGNEVIIN------SEIWDMRTFKLLHSVPSLD--QCAVTFNST 1312 (1516)
T ss_pred             eeeeeccHHHHhhhhhhe---------ecccccccCCCceEEee------chhhhhHHHHHHhcCcccc--ceEEEeccC
Confidence            479998877676664433         12233334443334432      2589999988776554322  256889888


Q ss_pred             CCEEEEEe-----C-C-----------CcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEE
Q 008467          504 GEYLASGS-----L-D-----------KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACF  552 (564)
Q Consensus       504 g~~lasgs-----~-d-----------g~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~  552 (564)
                      |..+...-     . |           ...+-|+..+.+.+.++...-++.++|=+|...+|++--
T Consensus      1313 G~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~vIe 1378 (1516)
T KOG1832|consen 1313 GDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGVIE 1378 (1516)
T ss_pred             ccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecccchhhhhcCCccceEEEEe
Confidence            87665332     0 0           234566677777788888888899999999998887643

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.85  E-value=6.7e-08  Score=91.07  Aligned_cols=88  Identities=23%  Similarity=0.335  Sum_probs=71.7

Q ss_pred             eeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecc-cccccEEEEEEccCCCCCCCCCCcEEEEEEeC
Q 008467          392 IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASF  470 (564)
Q Consensus       392 ~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~-~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~  470 (564)
                      .....||-+.+..|+|+||+++|+++..|..|||-....-..+..|- +|..-|..++..++-          .|+|||.
T Consensus       144 ~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~----------~LlS~sG  213 (390)
T KOG3914|consen  144 CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY----------LLLSGSG  213 (390)
T ss_pred             cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc----------eeeecCC
Confidence            34456899999999999999999999999999997665544444443 688888888876642          5899999


Q ss_pred             CCeEEEEeCCCCeEEEEEe
Q 008467          471 DSTVKLWDVELGKLLYSLN  489 (564)
Q Consensus       471 dg~i~iwd~~~~~~~~~~~  489 (564)
                      |++|++||+.+|+++.++.
T Consensus       214 D~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  214 DKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             CCcEEEEecccCCcccccc
Confidence            9999999999999886653

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.85  E-value=2.7e-06  Score=79.94  Aligned_cols=220  Identities=19%  Similarity=0.146  Sum_probs=135.3

Q ss_pred             CCeEEEEEC-CCceeEeecC---CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCce
Q 008467          296 DGQARIWST-NGDLKCTLSK---HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS  371 (564)
Q Consensus       296 dg~i~vw~~-~~~~~~~~~~---h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (564)
                      +|.|..||. +|+......-   ...++ +. ..+++.++++++.++.+..||..+|+.+-.+.......... ...+..
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~-~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~   78 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPV-AT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGR   78 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEE-ET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCcc-ce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eecccc
Confidence            577888886 5665554432   22222 11 22356788888999999999999999877766522211111 222334


Q ss_pred             EEEEeCCCeEEEEEcCCCceeeEe-cCCC---cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccE-EE
Q 008467          372 FATSSTDNMIYVCKIGENRPIKTF-AGHQ---GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEI-YT  446 (564)
Q Consensus       372 ~~~~~~d~~i~~~~~~~~~~~~~~-~~h~---~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i-~~  446 (564)
                      ++....++.++.++..+++.+-.. ....   ..........++..++.+..++.|..+|.++++.+.......... ..
T Consensus        79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~  158 (238)
T PF13360_consen   79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP  158 (238)
T ss_dssp             EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred             cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence            444557779999998888877663 3221   111122222237888888889999999999999876665433210 00


Q ss_pred             E------EEccCCCCCCCCCCcEEEEEEeCCCe-EEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 008467          447 I------RWSPTGSGTNNPNQQLILASASFDST-VKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIW  519 (564)
Q Consensus       447 i------~~~p~~~~~~~~~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw  519 (564)
                      +      .-.+.-     .+.  .+..++.++. +.+ |+.+++.++... . ..+.. ...+++..|+.++.++.|.+|
T Consensus       159 ~~~~~~~~~~~~~-----~~~--~v~~~~~~g~~~~~-d~~tg~~~w~~~-~-~~~~~-~~~~~~~~l~~~~~~~~l~~~  227 (238)
T PF13360_consen  159 ISSFSDINGSPVI-----SDG--RVYVSSGDGRVVAV-DLATGEKLWSKP-I-SGIYS-LPSVDGGTLYVTSSDGRLYAL  227 (238)
T ss_dssp             EEEETTEEEEEEC-----CTT--EEEEECCTSSEEEE-ETTTTEEEEEEC-S-S-ECE-CEECCCTEEEEEETTTEEEEE
T ss_pred             eeeecccccceEE-----ECC--EEEEEcCCCeEEEE-ECCCCCEEEEec-C-CCccC-CceeeCCEEEEEeCCCEEEEE
Confidence            0      001100     011  3455666775 555 999999776444 2 22222 245778888888899999999


Q ss_pred             eCCCCeEEEE
Q 008467          520 SLKEGKIVKT  529 (564)
Q Consensus       520 ~~~~~~~~~~  529 (564)
                      |+++|+.+..
T Consensus       228 d~~tG~~~W~  237 (238)
T PF13360_consen  228 DLKTGKVVWQ  237 (238)
T ss_dssp             ETTTTEEEEE
T ss_pred             ECCCCCEEeE
Confidence            9999998764

...

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.85  E-value=4.4e-08  Score=92.26  Aligned_cols=166  Identities=14%  Similarity=0.173  Sum_probs=105.8

Q ss_pred             EEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 008467          221 ACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQAR  300 (564)
Q Consensus       221 ~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~  300 (564)
                      ....+|.+++||.+..+....++++......    .   .........    .....++.+..+........++....+.
T Consensus        67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~----~---kl~~~~~v~----~~~~ai~~~~~~~sv~v~dkagD~~~~d  135 (390)
T KOG3914|consen   67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKG----A---KLLDVSCVP----KRPTAISFIREDTSVLVADKAGDVYSFD  135 (390)
T ss_pred             ccccCCCceEEEEEeCCCceEEEEEecCCCc----c---eeeeEeecc----cCcceeeeeeccceEEEEeecCCceeee
Confidence            4456677777777776666666665432110    0   000111110    1122344444444444444455556777


Q ss_pred             EEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCe
Q 008467          301 IWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNM  380 (564)
Q Consensus       301 vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  380 (564)
                      +|.........+-+|-+.++.++|+||+.+|+++..|..|++-....--.+.                            
T Consensus       136 i~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Ie----------------------------  187 (390)
T KOG3914|consen  136 ILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIE----------------------------  187 (390)
T ss_pred             eecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchh----------------------------
Confidence            7776533333456899999999999999999999999999986543211110                            


Q ss_pred             EEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecc
Q 008467          381 IYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR  438 (564)
Q Consensus       381 i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~  438 (564)
                                  .-+.||+..|..++.-++ ..|+|+|.|+++++||+.+++.++++.
T Consensus       188 ------------sfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  188 ------------SFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             ------------hhccccHhheeeeeeccC-ceeeecCCCCcEEEEecccCCcccccc
Confidence                        123589999999998754 558999999999999999999886653

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.84  E-value=1.6e-08  Score=98.47  Aligned_cols=272  Identities=14%  Similarity=0.194  Sum_probs=174.6

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEECC--C------ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEEC
Q 008467          274 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTN--G------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV  345 (564)
Q Consensus       274 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~--~------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~  345 (564)
                      |...|..++--.+.+-+++++.|.+|++|...  +      ....++..|+.+|.++.|-.+.++++++  |+-+.+||.
T Consensus       734 H~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDP  811 (1034)
T KOG4190|consen  734 HQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDP  811 (1034)
T ss_pred             cHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecc
Confidence            44455555544567789999999999999853  2      1345678999999999999888877654  889999998


Q ss_pred             CCcceeEEEee-----cccCeEEEEc-CCCceEEEEeCCCeEEEEEcCCCceeeEe-----cCCCcceEEEEECCCCCEE
Q 008467          346 KTEEWKQQFEF-----HSGPTLDVDW-RNNVSFATSSTDNMIYVCKIGENRPIKTF-----AGHQGEVNCVKWDPTGSLL  414 (564)
Q Consensus       346 ~~~~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~~-----~~h~~~i~~v~~~~~~~~l  414 (564)
                      --+....+...     ..+.+.++.- .....++.|+...++.++|.+...-+..+     .+.++.+.+++.-+.|+.+
T Consensus       812 Figr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~l  891 (1034)
T KOG4190|consen  812 FIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKL  891 (1034)
T ss_pred             cccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchh
Confidence            76665543321     1122333322 22344566788888988887665433222     3455678999999999999


Q ss_pred             EEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEE-EeCCCCeEEEEEeCCCC
Q 008467          415 ASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKL-WDVELGKLLYSLNGHRE  493 (564)
Q Consensus       415 as~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~i-wd~~~~~~~~~~~~h~~  493 (564)
                      |.+-..|.|.+.|.++++.+...+........++- |        .++ .|+....|.++.+ |....|...+..+....
T Consensus       892 Aa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-p--------sdq-~L~~saldHslaVnWhaldgimh~q~kpppe  961 (1034)
T KOG4190|consen  892 AAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-P--------SDQ-ALAQSALDHSLAVNWHALDGIMHLQDKPPPE  961 (1034)
T ss_pred             hHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-c--------hhH-HHHhhcccceeEeeehhcCCeeeeccCCCCc
Confidence            99999999999999999988776654433333321 2        111 4677777888988 98877777666554333


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-------eEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEE
Q 008467          494 PVYSLAFSPTGEYLASGSLDKSMHIWSLKEG-------KIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCV  559 (564)
Q Consensus       494 ~i~~~~~spdg~~lasgs~dg~i~iw~~~~~-------~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v  559 (564)
                      |..-+  -.-|.-|+++.....+.+|.-...       ..++.-+-.+..++++--|-..-+.+|...|.+++
T Consensus       962 pahfl--qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen  962 PAHFL--QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred             chhhh--hccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence            32111  123555666666666666642110       01111111344567777776666666766777665

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.83  E-value=1.4e-05  Score=81.18  Aligned_cols=251  Identities=14%  Similarity=0.128  Sum_probs=150.3

Q ss_pred             CCEEEEEeCCCeEEEEEC-CCceeEeecCCCCCEEE-EEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecc------
Q 008467          287 GTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFS-LKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS------  358 (564)
Q Consensus       287 g~~l~sg~~dg~i~vw~~-~~~~~~~~~~h~~~V~~-l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~------  358 (564)
                      +..++.++.+|.+..+|. +|+........ +++.+ ...  .+..++.++.++.+..+|..+|+.+-.+....      
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~  196 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVA-GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR  196 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCC-CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence            456777888999999996 46655444322 22211 011  24567778889999999999998776554321      


Q ss_pred             ---cCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCC----c---ceEEEEECC--CCCEEEEEeCCCcEEEE
Q 008467          359 ---GPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ----G---EVNCVKWDP--TGSLLASCSDDVTAKIW  426 (564)
Q Consensus       359 ---~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~----~---~i~~v~~~~--~~~~las~s~dg~i~iw  426 (564)
                         .++.     .+..++.++.++.++.++..+++.+-.+....    .   ....+..+|  .+..++.++.+|.+..+
T Consensus       197 ~~~sP~v-----~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~al  271 (394)
T PRK11138        197 GESAPAT-----AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVAL  271 (394)
T ss_pred             CCCCCEE-----ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEE
Confidence               1111     12234556677888888877766543322100    0   011111122  24556677789999999


Q ss_pred             eCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCC-CEEEEEEcCCCC
Q 008467          427 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHRE-PVYSLAFSPTGE  505 (564)
Q Consensus       427 d~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~-~i~~~~~spdg~  505 (564)
                      |..+++.+-....  .....+..  .+       +  .+..++.+|.+..+|..+|+.+.....-.. ...+...  .+.
T Consensus       272 d~~tG~~~W~~~~--~~~~~~~~--~~-------~--~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g  336 (394)
T PRK11138        272 DLRSGQIVWKREY--GSVNDFAV--DG-------G--RIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNG  336 (394)
T ss_pred             ECCCCCEEEeecC--CCccCcEE--EC-------C--EEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECC
Confidence            9988876543221  10001111  01       1  355677899999999999988775432111 1111222  256


Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEEecC-CCEEE-EEEccCCCEEEEEEcCCcEEEEEe
Q 008467          506 YLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFE-VCWNKEGDKIAACFANHTVCVLDF  562 (564)
Q Consensus       506 ~lasgs~dg~i~iw~~~~~~~~~~~~~~-~~i~~-~~w~~~g~~la~~~~~~~v~v~~~  562 (564)
                      +|+.++.||.|.+.|..+|+++..+... ..+.. ...  .+.+|.+++.+|.+..++.
T Consensus       337 ~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        337 YLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             EEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence            7788899999999999999998877543 23332 122  3568888889998877653

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.83  E-value=9.9e-07  Score=78.81  Aligned_cols=215  Identities=14%  Similarity=0.082  Sum_probs=137.4

Q ss_pred             CCEEEEeeCCCcEEEEECCCcceeEEE-eecccCeEEEE--cCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCc--ce
Q 008467          328 GDYLLTGSCDKTAIVWDVKTEEWKQQF-EFHSGPTLDVD--WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQG--EV  402 (564)
Q Consensus       328 ~~~l~s~s~D~~v~iwd~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~--~i  402 (564)
                      ..+|+.|+.-|...+|.+.+.+..... ..+...+.-..  ......+..++.|.++.+.++..+..-.  .-|..  .+
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~--~~h~~~~~~  161 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKF--AVHNQNLTQ  161 (344)
T ss_pred             ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccc--eeeccccce
Confidence            457889999999999999876543322 22111110000  0122345567778777777665432211  12322  37


Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEeCCCCee-eee--cccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeC
Q 008467          403 NCVKWDPTGSLLASCSDDVTAKIWNMKQDKY-VHD--LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV  479 (564)
Q Consensus       403 ~~v~~~~~~~~las~s~dg~i~iwd~~~~~~-~~~--~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~  479 (564)
                      +++.+++|++++++.++...|..|.+..... +..  .......-.+..|+...         ..+|+++.||++.|||+
T Consensus       162 ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~---------~~FAv~~Qdg~~~I~DV  232 (344)
T KOG4532|consen  162 NSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND---------LQFAVVFQDGTCAIYDV  232 (344)
T ss_pred             eeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc---------ceEEEEecCCcEEEEEe
Confidence            8999999999999999999999998765432 211  11222333556666543         37899999999999999


Q ss_pred             CCCeEEE-----EEeCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEeCCCCeEEEEEe---c-----C-CCEEEEEEcc
Q 008467          480 ELGKLLY-----SLNGHREPVYSLAFSPTGE--YLASGSLDKSMHIWSLKEGKIVKTYT---G-----N-GGIFEVCWNK  543 (564)
Q Consensus       480 ~~~~~~~-----~~~~h~~~i~~~~~spdg~--~lasgs~dg~i~iw~~~~~~~~~~~~---~-----~-~~i~~~~w~~  543 (564)
                      +......     +-..|.+.+..+.|+|-|.  +|.-.-.-+.+++-|+++++-.+...   .     . ..|+.-+|+.
T Consensus       233 R~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~  312 (344)
T KOG4532|consen  233 RNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNN  312 (344)
T ss_pred             cccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccC
Confidence            8644322     1234788999999998763  45555556789999999986443321   1     1 2377888888


Q ss_pred             CCCEEEEEEc
Q 008467          544 EGDKIAACFA  553 (564)
Q Consensus       544 ~g~~la~~~~  553 (564)
                      ++..+-+...
T Consensus       313 ~n~s~~v~~e  322 (344)
T KOG4532|consen  313 ENESNDVKNE  322 (344)
T ss_pred             CCcccccccc
Confidence            8876665543

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.79  E-value=8.5e-08  Score=96.63  Aligned_cols=277  Identities=17%  Similarity=0.315  Sum_probs=179.9

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEECC--CceeEeecCCCC--CEEEEEeCCCC--CEEEEeeCCCcEEEEECCCc
Q 008467          275 SKDVTTLDWNGEGTLLATGSYDGQARIWSTN--GDLKCTLSKHKG--PIFSLKWNKKG--DYLLTGSCDKTAIVWDVKTE  348 (564)
Q Consensus       275 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~--~~~~~~~~~h~~--~V~~l~~~~~~--~~l~s~s~D~~v~iwd~~~~  348 (564)
                      ...+..+..+|.|+-+|.++.-|...+ +..  ..... .-.|-.  .|-.+.|+|..  .+-+.........+|++...
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~gl~i~-dld~p~~ppr-~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s  101 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQGLYII-DLDDPFTPPR-WLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS  101 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcCeEEE-eccCCCCCce-eeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence            356778889999999999888775543 332  22111 112322  35567787754  23333334455678887432


Q ss_pred             ---ceeEEEeecccCeEEEEcCCC--ceEEEEeCCCeEEEEEcCCC-ceeeEecCCCcceEEEEECCCCCEEEEEeCCCc
Q 008467          349 ---EWKQQFEFHSGPTLDVDWRNN--VSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVT  422 (564)
Q Consensus       349 ---~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~  422 (564)
                         ...-.+..|...+.++.|.+.  ..+++|+.|..+..|+++.. .|+..+..-......|+|+-....+...+....
T Consensus       102 s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~  181 (1081)
T KOG0309|consen  102 SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGND  181 (1081)
T ss_pred             CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCc
Confidence               222234567778999999654  57899999999999999764 566666555566778999876655556667778


Q ss_pred             EEEEeCCCC-eeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE--EEEEeCCCCCEEEEE
Q 008467          423 AKIWNMKQD-KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL--LYSLNGHREPVYSLA  499 (564)
Q Consensus       423 i~iwd~~~~-~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~h~~~i~~~~  499 (564)
                      |++||.+.+ .++..+++|...|+.+.|...-.        ..+.+++.||+|++||..+...  -++. ....||..-.
T Consensus       182 i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~--------s~~~s~~~d~tvkfw~y~kSt~e~~~~v-tt~~piw~~r  252 (1081)
T KOG0309|consen  182 IFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY--------SEIMSSSNDGTVKFWDYSKSTTESKRTV-TTNFPIWRGR  252 (1081)
T ss_pred             eEEEeccCCCcceEEecccceeeehHHHhhhhh--------hhhcccCCCCceeeecccccccccceec-cccCcceecc
Confidence            999999865 45778888888888888764322        2477899999999999875432  1222 2345778778


Q ss_pred             EcCCCCEEEEEe--CCCcEEE---------EeCCCC-eEEEEEecCCC-EEEEEEccCCC----------EEEEEEcCCc
Q 008467          500 FSPTGEYLASGS--LDKSMHI---------WSLKEG-KIVKTYTGNGG-IFEVCWNKEGD----------KIAACFANHT  556 (564)
Q Consensus       500 ~spdg~~lasgs--~dg~i~i---------w~~~~~-~~~~~~~~~~~-i~~~~w~~~g~----------~la~~~~~~~  556 (564)
                      |-|-|.-..+--  .+..+.+         |++.++ ..+++|.++.. |.++-|...+.          .|++=+.|-.
T Consensus       253 ~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~  332 (1081)
T KOG0309|consen  253 YLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQT  332 (1081)
T ss_pred             ccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCc
Confidence            888664332211  1123444         444332 46788877653 55666655432          6777788888


Q ss_pred             EEEEEe
Q 008467          557 VCVLDF  562 (564)
Q Consensus       557 v~v~~~  562 (564)
                      +++|-+
T Consensus       333 lrlWpI  338 (1081)
T KOG0309|consen  333 LRLWPI  338 (1081)
T ss_pred             eEeeec
Confidence            888855

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.77  E-value=2.9e-08  Score=63.68  Aligned_cols=39  Identities=41%  Similarity=0.867  Sum_probs=37.0

Q ss_pred             CeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008467          482 GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS  520 (564)
Q Consensus       482 ~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~  520 (564)
                      ++++.++.+|..+|++|+|+|++.+|++|+.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.73  E-value=1.1e-06  Score=89.48  Aligned_cols=235  Identities=14%  Similarity=0.199  Sum_probs=156.3

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEEC-CCceeEeecCCCCCEEEEEeCCCC------------CEEEEeeCCCcEEEEE
Q 008467          278 VTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKG------------DYLLTGSCDKTAIVWD  344 (564)
Q Consensus       278 V~~l~~s~~g~~l~sg~~dg~i~vw~~-~~~~~~~~~~h~~~V~~l~~~~~~------------~~l~s~s~D~~v~iwd  344 (564)
                      -.+++|+|.| +||-|+.. .|.+-|. .-+....+..|...|+.++|.|-.            -.|+++...|.|.+||
T Consensus        18 ~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d   95 (1062)
T KOG1912|consen   18 RNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD   95 (1062)
T ss_pred             ccccccCccc-eEEEecCc-eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence            5678999987 56666643 5556664 446677888999999999998732            1355666679999999


Q ss_pred             CCCcceeEEEeecccCeEEEEcCC---C--ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECC-CCCEEEEEe
Q 008467          345 VKTEEWKQQFEFHSGPTLDVDWRN---N--VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCS  418 (564)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~-~~~~las~s  418 (564)
                      ...+..+..+..+..++.+++|..   +  ..+++-+...++.+|+..++..+-.+........|+.++| |.+.+..-+
T Consensus        96 ~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~  175 (1062)
T KOG1912|consen   96 FVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLG  175 (1062)
T ss_pred             ehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEc
Confidence            999988888888999999999842   2  3456667788999999888877666555555677788888 344444444


Q ss_pred             CCCcEEEEeCCC-------Ceeeeecccccc----------------c-------EE--EEEEccCCCCCCCCCCcEEEE
Q 008467          419 DDVTAKIWNMKQ-------DKYVHDLREHSK----------------E-------IY--TIRWSPTGSGTNNPNQQLILA  466 (564)
Q Consensus       419 ~dg~i~iwd~~~-------~~~~~~~~~~~~----------------~-------i~--~i~~~p~~~~~~~~~~~~~l~  466 (564)
                      ..|.+.+-+.-.       ++..+.-..|..                .       .+  .++|+|.-.       ..+++
T Consensus       176 s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~r-------n~lfi  248 (1062)
T KOG1912|consen  176 SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWR-------NILFI  248 (1062)
T ss_pred             cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhh-------ceEEE
Confidence            555555544321       111111111111                0       00  122333221       12333


Q ss_pred             EEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEeCCC
Q 008467          467 SASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG--EYLASGSLDKSMHIWSLKE  523 (564)
Q Consensus       467 s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg--~~lasgs~dg~i~iw~~~~  523 (564)
                      +  ....+.|+|++-..++....-.++.+.-+.+-|++  ..|.++-.||.+.||-.+.
T Consensus       249 ~--~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  249 T--FPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             E--eccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence            3  56789999999888888776556666667777776  5788999999999998764

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.69  E-value=1e-07  Score=87.96  Aligned_cols=157  Identities=15%  Similarity=0.209  Sum_probs=107.8

Q ss_pred             eCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-----eeeeecccccccEEEEEEc
Q 008467          376 STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD-----KYVHDLREHSKEIYTIRWS  450 (564)
Q Consensus       376 ~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~-----~~~~~~~~~~~~i~~i~~~  450 (564)
                      +.+..+-+.++.++.. +.| ...+.|.++.|...++++..|..+|.|...|++.+     .+.+. -.|...|+++..-
T Consensus       231 G~sqqv~L~nvetg~~-qsf-~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r-lyh~Ssvtslq~L  307 (425)
T KOG2695|consen  231 GLSQQVLLTNVETGHQ-QSF-QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR-LYHDSSVTSLQIL  307 (425)
T ss_pred             cccceeEEEEeecccc-ccc-ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE-EEcCcchhhhhhh
Confidence            3444444545443321 122 24567888999988999999999999999999865     22222 2477777776543


Q ss_pred             cCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE---EEEEeCCCCCEEE--EEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 008467          451 PTGSGTNNPNQQLILASASFDSTVKLWDVELGKL---LYSLNGHREPVYS--LAFSPTGEYLASGSLDKSMHIWSLKEGK  525 (564)
Q Consensus       451 p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~h~~~i~~--~~~spdg~~lasgs~dg~i~iw~~~~~~  525 (564)
                      ...       ++ .|.+.+++|+|++||.+.-++   +....||...-.-  +-..+....++++|.|...+||.++.|.
T Consensus       308 q~s-------~q-~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh  379 (425)
T KOG2695|consen  308 QFS-------QQ-KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH  379 (425)
T ss_pred             ccc-------cc-eEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCc
Confidence            311       12 577788999999999987666   7888888532222  2345667889999999999999999999


Q ss_pred             EEEEEecCC-----CEEEEEEcc
Q 008467          526 IVKTYTGNG-----GIFEVCWNK  543 (564)
Q Consensus       526 ~~~~~~~~~-----~i~~~~w~~  543 (564)
                      ++.+.+...     .+.+++++.
T Consensus       380 Ll~tipf~~s~~e~d~~sv~~~s  402 (425)
T KOG2695|consen  380 LLCTIPFPYSASEVDIPSVAFDS  402 (425)
T ss_pred             eeeccCCCCccccccccceehhc
Confidence            998876432     344555543

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.68  E-value=5.2e-08  Score=62.46  Aligned_cols=38  Identities=39%  Similarity=0.910  Sum_probs=36.0

Q ss_pred             ceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEe
Q 008467          390 RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN  427 (564)
Q Consensus       390 ~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd  427 (564)
                      +++.++.+|.+.|++++|+|++.+|++|+.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            46788999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.66  E-value=9.5e-06  Score=72.69  Aligned_cols=228  Identities=15%  Similarity=0.098  Sum_probs=144.1

Q ss_pred             CCEEEEEeCCCeEEEEECCCc--eeEeecCCCCCEEEEEeC-CCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEE
Q 008467          287 GTLLATGSYDGQARIWSTNGD--LKCTLSKHKGPIFSLKWN-KKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD  363 (564)
Q Consensus       287 g~~l~sg~~dg~i~vw~~~~~--~~~~~~~h~~~V~~l~~~-~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~  363 (564)
                      .-+|+.|+..|...+|.....  .......|...|+-++=. ...-.+..++.|.++++.++..+..........-.+..
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns  163 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS  163 (344)
T ss_pred             ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence            457899999999999986532  233334454444322211 11234677889999999988765544333222222556


Q ss_pred             EEcCCCceEEEE-eCCCeEEEEEcCCCc--eeeEe-cCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeec--
Q 008467          364 VDWRNNVSFATS-STDNMIYVCKIGENR--PIKTF-AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL--  437 (564)
Q Consensus       364 ~~~~~~~~~~~~-~~d~~i~~~~~~~~~--~~~~~-~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~--  437 (564)
                      +...++..+.++ +....|+.|.++...  .+++. ...+..--+..|+.....+|+++.||++.|||++........  
T Consensus       164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s  243 (344)
T KOG4532|consen  164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS  243 (344)
T ss_pred             eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhc
Confidence            666777666554 555678888776532  23322 223334557889999999999999999999999876543221  


Q ss_pred             ---ccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEe-------CCC-CCEEEEEEcCCCCE
Q 008467          438 ---REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN-------GHR-EPVYSLAFSPTGEY  506 (564)
Q Consensus       438 ---~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------~h~-~~i~~~~~spdg~~  506 (564)
                         ..|.+.+..+.|+|.|..      .+++.+ -.-+.+.+-|+++++....+.       .|. ..|....|+.++.-
T Consensus       244 strp~hnGa~R~c~Fsl~g~l------DLLf~s-Ehfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s  316 (344)
T KOG4532|consen  244 STRPHHNGAFRVCRFSLYGLL------DLLFIS-EHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENES  316 (344)
T ss_pred             ccCCCCCCceEEEEecCCCcc------eEEEEe-cCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcc
Confidence               247889999999986642      234444 345789999999887654432       122 23777788887766


Q ss_pred             EEEEeCCCcEEEEeCC
Q 008467          507 LASGSLDKSMHIWSLK  522 (564)
Q Consensus       507 lasgs~dg~i~iw~~~  522 (564)
                      +.+.+.+. +.-|++.
T Consensus       317 ~~v~~e~~-~ae~ni~  331 (344)
T KOG4532|consen  317 NDVKNELQ-GAEYNIL  331 (344)
T ss_pred             cccccchh-hheeecc
Confidence            66555543 4445543

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.65  E-value=7.3e-07  Score=92.27  Aligned_cols=183  Identities=17%  Similarity=0.258  Sum_probs=136.9

Q ss_pred             CCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEE
Q 008467          327 KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVK  406 (564)
Q Consensus       327 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~  406 (564)
                      ++..++-|+....+..+|+++.+..+......+.+.-+. .++..+.++...|+|.+-|..+.+++.+|..|++.|..+.
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR-~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD  224 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR-YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD  224 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEE-ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence            345678888888899999999887776666554444333 3455677788999999999999999999999999997765


Q ss_pred             ECCCCCEEEEEeCC---------CcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEE
Q 008467          407 WDPTGSLLASCSDD---------VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW  477 (564)
Q Consensus       407 ~~~~~~~las~s~d---------g~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iw  477 (564)
                      .  .|++|+||+..         ..|+|||++..+.+.-+..+.++ .-++|.|.-.        ..++.+|..|...+-
T Consensus       225 v--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~--------t~~~V~S~sGq~q~v  293 (1118)
T KOG1275|consen  225 V--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLT--------TRLAVTSQSGQFQFV  293 (1118)
T ss_pred             c--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhccccc--------ceEEEEecccceeec
Confidence            4  68999999864         45799999987766555555444 4456666543        257788888999998


Q ss_pred             eCC---CC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 008467          478 DVE---LG-KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL  521 (564)
Q Consensus       478 d~~---~~-~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~  521 (564)
                      |..   +. .-++.+......+..+.+|++|+.||.|..+|.|.+|.-
T Consensus       294 d~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  294 DTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             cccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence            832   22 112333334455999999999999999999999999984

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=5.3e-07  Score=86.12  Aligned_cols=237  Identities=18%  Similarity=0.235  Sum_probs=155.5

Q ss_pred             CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC---cceeEEEeecccCeEEEEcC-CCceEEEEeC-CCeEEEEEcCCC
Q 008467          315 HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT---EEWKQQFEFHSGPTLDVDWR-NNVSFATSST-DNMIYVCKIGEN  389 (564)
Q Consensus       315 h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-d~~i~~~~~~~~  389 (564)
                      |...|+.+. -...+++++++.||.++.|-...   -+.+..+..|.+.+..+.-. +...+.+.+. |..++++++.+-
T Consensus         8 hrd~i~hv~-~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen    8 HRDVITHVF-PTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             ccceeeeEe-eehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            666676654 33467999999999999996533   23445556666666555543 3345566555 888998887653


Q ss_pred             ceee--EecCCCcceEEEEECCC-C-CEE-EEEeCCCcEEEEeCCCCee--eeecccccccEEEEEEccCCCCCCCCCCc
Q 008467          390 RPIK--TFAGHQGEVNCVKWDPT-G-SLL-ASCSDDVTAKIWNMKQDKY--VHDLREHSKEIYTIRWSPTGSGTNNPNQQ  462 (564)
Q Consensus       390 ~~~~--~~~~h~~~i~~v~~~~~-~-~~l-as~s~dg~i~iwd~~~~~~--~~~~~~~~~~i~~i~~~p~~~~~~~~~~~  462 (564)
                      ..+.  .+.--.+.+.++ .++. - .+| ++.-+++.+.++|-....+  ...-.-|..+|..+.+.|.+.        
T Consensus        87 DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D--------  157 (558)
T KOG0882|consen   87 DMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD--------  157 (558)
T ss_pred             chhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc--------
Confidence            2211  111111122211 1221 1 133 3444688999999776543  223345899999999999875        


Q ss_pred             EEEEEEeCCCeEEEEeCCC------CeEEEEEe---------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 008467          463 LILASASFDSTVKLWDVEL------GKLLYSLN---------GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV  527 (564)
Q Consensus       463 ~~l~s~s~dg~i~iwd~~~------~~~~~~~~---------~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~  527 (564)
                       .++|....|-|.-|...-      .+..+.++         .......++.|+|+|..+++-+.|..|+++..++|+++
T Consensus       158 -s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv  236 (558)
T KOG0882|consen  158 -SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV  236 (558)
T ss_pred             -ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence             466777789999998762      22222222         22345689999999999999999999999999999987


Q ss_pred             EEEecC----------------------------------CCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          528 KTYTGN----------------------------------GGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       528 ~~~~~~----------------------------------~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      +.++..                                  ..-..++|+..|++|..+.-=| |.|+|+.
T Consensus       237 qeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~  305 (558)
T KOG0882|consen  237 QEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLD  305 (558)
T ss_pred             hhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEee
Confidence            665310                                  1124688999999999986654 7777763

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.61  E-value=3e-05  Score=72.76  Aligned_cols=213  Identities=15%  Similarity=0.139  Sum_probs=132.6

Q ss_pred             CCcEEEEECCCcceeEEEeecc--cCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEE
Q 008467          337 DKTAIVWDVKTEEWKQQFEFHS--GPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL  414 (564)
Q Consensus       337 D~~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l  414 (564)
                      +++|..||+++++.+-......  ..........+..+.+++.++.++.++..+++.+-.+.. .+.+.... ...+..+
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v   79 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRV   79 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccccc
Confidence            6889999999998777765522  222221232445555568999999999988887766553 22211111 1134556


Q ss_pred             EEEeCCCcEEEEeCCCCeeeeec-ccccc---cEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeC
Q 008467          415 ASCSDDVTAKIWNMKQDKYVHDL-REHSK---EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG  490 (564)
Q Consensus       415 as~s~dg~i~iwd~~~~~~~~~~-~~~~~---~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  490 (564)
                      +.++.++.+..+|..+++.+..+ .....   ..........+.         .++.+..++.|..+|+++|+.+.....
T Consensus        80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~g~l~~~d~~tG~~~w~~~~  150 (238)
T PF13360_consen   80 YVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGD---------RLYVGTSSGKLVALDPKTGKLLWKYPV  150 (238)
T ss_dssp             EEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETT---------EEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred             ccccceeeeEecccCCcceeeeeccccccccccccccCceEecC---------EEEEEeccCcEEEEecCCCcEEEEeec
Confidence            67778889999999999887663 22110   001111111111         466677799999999999999988866


Q ss_pred             CCCC----------EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEE
Q 008467          491 HREP----------VYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVL  560 (564)
Q Consensus       491 h~~~----------i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~  560 (564)
                      ...+          +..-....++ .+..++.++.+..+|+.+|+.+.... ...+.. ....++..|.++..++.+..|
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~~~~-~~~~~~~~l~~~~~~~~l~~~  227 (238)
T PF13360_consen  151 GEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-ISGIYS-LPSVDGGTLYVTSSDGRLYAL  227 (238)
T ss_dssp             STT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS-ECE-CEECCCTEEEEEETTTEEEEE
T ss_pred             CCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CCCccC-CceeeCCEEEEEeCCCEEEEE
Confidence            4322          1222222345 77777777754444999999765333 333333 245778888888789999999


Q ss_pred             Eee
Q 008467          561 DFR  563 (564)
Q Consensus       561 ~~~  563 (564)
                      |++
T Consensus       228 d~~  230 (238)
T PF13360_consen  228 DLK  230 (238)
T ss_dssp             ETT
T ss_pred             ECC
Confidence            975

...

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.61  E-value=1.8e-05  Score=72.06  Aligned_cols=188  Identities=22%  Similarity=0.323  Sum_probs=106.9

Q ss_pred             EEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC------CCEEEEE
Q 008467          220 CACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE------GTLLATG  293 (564)
Q Consensus       220 ~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~------g~~l~sg  293 (564)
                      .-++||||+.+||.+...|+|+++|+.....           ..+.........-+..|-.|.|-.-      ...|++-
T Consensus        47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-----------f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi  115 (282)
T PF15492_consen   47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-----------FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVI  115 (282)
T ss_pred             eEEEECCCCcEEEEEcCCCeEEEEeccccee-----------EEcCcccccCCccccceeeeEeeccccccccceeEEEE
Confidence            4689999999999999999999999864321           0111000001112344555555321      1235556


Q ss_pred             eCCCeEEEEECC----C--ceeEe--e-cCCCCCEEEEEeCCCCCEEEEeeCCCc-----------EEEEECCCcceeEE
Q 008467          294 SYDGQARIWSTN----G--DLKCT--L-SKHKGPIFSLKWNKKGDYLLTGSCDKT-----------AIVWDVKTEEWKQQ  353 (564)
Q Consensus       294 ~~dg~i~vw~~~----~--~~~~~--~-~~h~~~V~~l~~~~~~~~l~s~s~D~~-----------v~iwd~~~~~~~~~  353 (564)
                      .++|.++=|-+.    .  .....  + ..+...|.++.|+|..+.|+.|+....           +..|-+-.+.    
T Consensus       116 ~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~----  191 (282)
T PF15492_consen  116 NYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDS----  191 (282)
T ss_pred             eccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCC----
Confidence            677877766431    1  12222  2 235778999999999888877765322           2223221111    


Q ss_pred             EeecccCeEEEEcCCCceEEEEeCCCeE------EEEEcCCCceeeEe---cCCCcceEEEEECCCCCEEEEEeCCCcEE
Q 008467          354 FEFHSGPTLDVDWRNNVSFATSSTDNMI------YVCKIGENRPIKTF---AGHQGEVNCVKWDPTGSLLASCSDDVTAK  424 (564)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i------~~~~~~~~~~~~~~---~~h~~~i~~v~~~~~~~~las~s~dg~i~  424 (564)
                                    +....+....+...      .++.+..   .+.|   ......|-.+..||||++||+.+.+|.|.
T Consensus       192 --------------Pyyk~v~~~~~~~~~~~~~~~~~~~~~---~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~ls  254 (282)
T PF15492_consen  192 --------------PYYKQVTSSEDDITASSKRRGLLRIPS---FKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLS  254 (282)
T ss_pred             --------------CcEEEccccCccccccccccceeeccc---eeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEE
Confidence                          01111112211111      1122211   1112   12345688999999999999999999999


Q ss_pred             EEeCCCCeeeeeccc
Q 008467          425 IWNMKQDKYVHDLRE  439 (564)
Q Consensus       425 iwd~~~~~~~~~~~~  439 (564)
                      +|++-+-++......
T Consensus       255 LW~iPsL~~~~~W~~  269 (282)
T PF15492_consen  255 LWEIPSLRLQRSWKQ  269 (282)
T ss_pred             EEecCcchhhcccch
Confidence            999877665554443

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.58  E-value=2.6e-07  Score=85.33  Aligned_cols=156  Identities=13%  Similarity=0.274  Sum_probs=120.0

Q ss_pred             EECCC--CCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCc----ceeEEEe
Q 008467          282 DWNGE--GTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE----EWKQQFE  355 (564)
Q Consensus       282 ~~s~~--g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~----~~~~~~~  355 (564)
                      +|+-+  |-. ++.+.+-.|-+-++.+.....|. .++.|+++.|...++.+..|...|.|..+|++.+    .+..+..
T Consensus       218 awSlni~gyh-fs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl  295 (425)
T KOG2695|consen  218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL  295 (425)
T ss_pred             hhhhccceee-ecccccceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE
Confidence            66642  333 45566677778787777666665 6788999999999999999999999999999876    5555666


Q ss_pred             ecccCeEEEEcC--CCceEEEEeCCCeEEEEEcCCCce---eeEecCCCcceEE--EEECCCCCEEEEEeCCCcEEEEeC
Q 008467          356 FHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRP---IKTFAGHQGEVNC--VKWDPTGSLLASCSDDVTAKIWNM  428 (564)
Q Consensus       356 ~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~---~~~~~~h~~~i~~--v~~~~~~~~las~s~dg~i~iwd~  428 (564)
                      .|...+.++.-.  .+..+++++.+|.|.+||.+-.+.   +..+.||.+.-.-  +-.++....++++++|...|||.+
T Consensus       296 yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl  375 (425)
T KOG2695|consen  296 YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSL  375 (425)
T ss_pred             EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEec
Confidence            677777666542  456788899999999999987665   8999999664332  344667788899999999999999


Q ss_pred             CCCeeeeeccc
Q 008467          429 KQDKYVHDLRE  439 (564)
Q Consensus       429 ~~~~~~~~~~~  439 (564)
                      +.+..+.++..
T Consensus       376 ~~ghLl~tipf  386 (425)
T KOG2695|consen  376 DSGHLLCTIPF  386 (425)
T ss_pred             ccCceeeccCC
Confidence            98887766543

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.56  E-value=3.6e-06  Score=86.31  Aligned_cols=176  Identities=19%  Similarity=0.266  Sum_probs=121.8

Q ss_pred             CceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEE
Q 008467          369 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR  448 (564)
Q Consensus       369 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~  448 (564)
                      +..|+.++-+|.+++.+.....  .+...|...      +.+|.+++|||+||+|.|-.+.+.+..+.+. ...++.+|+
T Consensus        49 ~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksia  119 (846)
T KOG2066|consen   49 DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIA  119 (846)
T ss_pred             cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEE
Confidence            4456777778888887765442  222233332      5689999999999999999988776655443 346889999


Q ss_pred             EccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-C-eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE
Q 008467          449 WSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-G-KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI  526 (564)
Q Consensus       449 ~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~-~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~  526 (564)
                      ++|+-..    .+...+++|+.-| +.++.-.= | +.-..+....++|.+++|.  |.+||-++.+| |+|||+.+++.
T Consensus       120 l~Pd~~~----~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~  191 (846)
T KOG2066|consen  120 LHPDFSR----QQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQR  191 (846)
T ss_pred             eccchhh----hhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccce
Confidence            9998321    1123578899888 66664220 1 1111344556899999995  78999999999 99999999887


Q ss_pred             EEEEecCC-------CEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          527 VKTYTGNG-------GIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       527 ~~~~~~~~-------~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      +...+...       -...+.|.++. .|+.|.++ +|.|..+|
T Consensus       192 l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d-~v~i~~I~  233 (846)
T KOG2066|consen  192 LTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGD-SVKICSIK  233 (846)
T ss_pred             eeccCCCCCCCCcccCCCceEecCCC-eEEEecCC-eEEEEEEe
Confidence            76654322       13579997664 67778666 78887776

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.54  E-value=1.5e-06  Score=88.53  Aligned_cols=159  Identities=19%  Similarity=0.341  Sum_probs=125.3

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCC--CCC-CCcEEEEEEeCCCeEEEE
Q 008467          401 EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGT--NNP-NQQLILASASFDSTVKLW  477 (564)
Q Consensus       401 ~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~--~~~-~~~~~l~s~s~dg~i~iw  477 (564)
                      .-.++.|+|.| +||-|+.. .|.+-|..+-+.+..+.-|...|+.++|.|.....  .+| ..+++||++...|.|-+|
T Consensus        17 N~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~   94 (1062)
T KOG1912|consen   17 NRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV   94 (1062)
T ss_pred             cccccccCccc-eEEEecCc-eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence            36678999865 56666654 68888999999999999999999999999875432  222 256789999999999999


Q ss_pred             eCCCCeEEEEEeCCCCCEEEEEEcC---CC-CEEEEEeCCCcEEEEeCCCCeEEEEEecCCCE-EEEEEcc-CCCEEEEE
Q 008467          478 DVELGKLLYSLNGHREPVYSLAFSP---TG-EYLASGSLDKSMHIWSLKEGKIVKTYTGNGGI-FEVCWNK-EGDKIAAC  551 (564)
Q Consensus       478 d~~~~~~~~~~~~h~~~i~~~~~sp---dg-~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i-~~~~w~~-~g~~la~~  551 (564)
                      |...+..+..+..|..+|..++|-|   +. .+|++-....+|.+|+..+|+.+..++....| .++.++| |.+++.+-
T Consensus        95 d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l  174 (1062)
T KOG1912|consen   95 DFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVL  174 (1062)
T ss_pred             EehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEE
Confidence            9999988888998999999998865   34 56666677789999999999999888765555 4588888 66777777


Q ss_pred             EcCCcEEEEE
Q 008467          552 FANHTVCVLD  561 (564)
Q Consensus       552 ~~~~~v~v~~  561 (564)
                      +..|.|.+.+
T Consensus       175 ~s~g~vl~~~  184 (1062)
T KOG1912|consen  175 GSKGFVLSCK  184 (1062)
T ss_pred             ccCceEEEEe
Confidence            6777665544

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.51  E-value=9.6e-06  Score=83.48  Aligned_cols=107  Identities=25%  Similarity=0.432  Sum_probs=81.9

Q ss_pred             EEEECCCCCEEEEEE----CCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC
Q 008467          221 ACAWSPAGSLLASGS----GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD  296 (564)
Q Consensus       221 ~~~~sp~~~~lasgs----~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d  296 (564)
                      -.+|||...+||.++    .-|.+.||- .+|....             +     ....-.+++++|+|..-.|+.|-.-
T Consensus        20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr-------------~-----Vt~P~hatSLCWHpe~~vLa~gwe~   80 (1416)
T KOG3617|consen   20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQR-------------D-----VTYPVHATSLCWHPEEFVLAQGWEM   80 (1416)
T ss_pred             ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCc-------------c-----cccceehhhhccChHHHHHhhcccc
Confidence            467999999988876    346777773 2332110             0     0011236789999999999999999


Q ss_pred             CeEEEEECCCceeEe-ecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECC
Q 008467          297 GQARIWSTNGDLKCT-LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK  346 (564)
Q Consensus       297 g~i~vw~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~  346 (564)
                      |.+.+|..+.....+ ...|+.+|..+.||++|+.++|+..-|.|.+|...
T Consensus        81 g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   81 GVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            999999987665544 45799999999999999999999999999999654

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.50  E-value=5.3e-06  Score=73.96  Aligned_cols=164  Identities=15%  Similarity=0.176  Sum_probs=98.5

Q ss_pred             EeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcc-eeEEEeecccCeEEEEcCCCceEEEEeCCC------eEE
Q 008467          310 CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE-WKQQFEFHSGPTLDVDWRNNVSFATSSTDN------MIY  382 (564)
Q Consensus       310 ~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~------~i~  382 (564)
                      ..+..|+++-.+-..+--++.++++..||.+.+.+.+.-. ...+.........+........++.++.=+      ..+
T Consensus        83 ~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~  162 (319)
T KOG4714|consen   83 KVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFY  162 (319)
T ss_pred             eeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeecccee
Confidence            3444565544333445557789999999999999876411 111111111111112222222333333222      234


Q ss_pred             EEEcCCCceeeEecCCCcceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCee-eeecccccccEEEEEEccCCCCCCCCC
Q 008467          383 VCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKY-VHDLREHSKEIYTIRWSPTGSGTNNPN  460 (564)
Q Consensus       383 ~~~~~~~~~~~~~~~h~~~i~~v~~~~~~-~~las~s~dg~i~iwd~~~~~~-~~~~~~~~~~i~~i~~~p~~~~~~~~~  460 (564)
                      .|+++..+....-.-....|.+++-+|.. .++++|++||.+-+||++.... +..+..|..+|..+.|+|....     
T Consensus       163 a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~-----  237 (319)
T KOG4714|consen  163 ANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPE-----  237 (319)
T ss_pred             eecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCch-----
Confidence            44443322111111112348889988865 4577888999999999987644 4557789999999999987532     


Q ss_pred             CcEEEEEEeCCCeEEEEeCCC
Q 008467          461 QQLILASASFDSTVKLWDVEL  481 (564)
Q Consensus       461 ~~~~l~s~s~dg~i~iwd~~~  481 (564)
                         .|++++.||.+--||..+
T Consensus       238 ---~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  238 ---HLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ---heeEecCCCcEEEEcCCC
Confidence               478999999999999764

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.50  E-value=0.00039  Score=65.52  Aligned_cols=243  Identities=16%  Similarity=0.134  Sum_probs=140.0

Q ss_pred             eEEEEECCC-CCEEEEEECCC-cEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeC-
Q 008467          219 VCACAWSPA-GSLLASGSGDS-TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY-  295 (564)
Q Consensus       219 V~~~~~sp~-~~~lasgs~D~-~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~-  295 (564)
                      ...++.+|. +..+|.+-.-| .+.+||..++.........     .-+++-+          --.||+||++|.+.-. 
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~-----~gRHFyG----------Hg~fs~dG~~LytTEnd   71 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAP-----PGRHFYG----------HGVFSPDGRLLYTTEND   71 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCC-----CCCEEec----------CEEEcCCCCEEEEeccc
Confidence            346788884 56777777665 4678998776532111000     0112212          2379999999998744 


Q ss_pred             ----CCeEEEEECCCc--eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCC
Q 008467          296 ----DGQARIWSTNGD--LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN  369 (564)
Q Consensus       296 ----dg~i~vw~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  369 (564)
                          .|.|-|||....  ....+..|.-.-..+.+.|+|..|+.+..  -|.- ...++..+                  
T Consensus        72 ~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANG--GI~T-hpd~GR~k------------------  130 (305)
T PF07433_consen   72 YETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANG--GIET-HPDSGRAK------------------  130 (305)
T ss_pred             cCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcC--CCcc-CcccCcee------------------
Confidence                389999998843  33456666655577889999987776532  1110 00111100                  


Q ss_pred             ceEEEEeCCCeEEEEEcCCCceeeE--e--cCCCcceEEEEECCCCCEEEEEeCCCc-------EEEEeCCCCeeeeec-
Q 008467          370 VSFATSSTDNMIYVCKIGENRPIKT--F--AGHQGEVNCVKWDPTGSLLASCSDDVT-------AKIWNMKQDKYVHDL-  437 (564)
Q Consensus       370 ~~~~~~~~d~~i~~~~~~~~~~~~~--~--~~h~~~i~~v~~~~~~~~las~s~dg~-------i~iwd~~~~~~~~~~-  437 (564)
                        +-...++-.+...+..++..+..  +  .-|...|.-++++++|..++.+-..|.       +-+++..  ..+..+ 
T Consensus       131 --LNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~  206 (305)
T PF07433_consen  131 --LNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLP  206 (305)
T ss_pred             --cChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--Ccceecc
Confidence              00011122222333333333332  3  236667888888888776665554442       2233322  211111 


Q ss_pred             ------ccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe
Q 008467          438 ------REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGS  511 (564)
Q Consensus       438 ------~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs  511 (564)
                            ..-.+.+-+|++++++.        .+.+|+=.-+.+.+||..+++.+....-  ..+..++-.+++ |++|.+
T Consensus       207 ~p~~~~~~l~~Y~gSIa~~~~g~--------~ia~tsPrGg~~~~~d~~tg~~~~~~~l--~D~cGva~~~~~-f~~ssG  275 (305)
T PF07433_consen  207 APEEQWRRLNGYIGSIAADRDGR--------LIAVTSPRGGRVAVWDAATGRLLGSVPL--PDACGVAPTDDG-FLVSSG  275 (305)
T ss_pred             CChHHHHhhCCceEEEEEeCCCC--------EEEEECCCCCEEEEEECCCCCEeecccc--CceeeeeecCCc-eEEeCC
Confidence                  22345688999988764        4667777889999999999998866542  246777777777 666654


Q ss_pred             C
Q 008467          512 L  512 (564)
Q Consensus       512 ~  512 (564)
                      .
T Consensus       276 ~  276 (305)
T PF07433_consen  276 Q  276 (305)
T ss_pred             C
Confidence            3

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.47  E-value=0.00025  Score=76.61  Aligned_cols=235  Identities=17%  Similarity=0.257  Sum_probs=131.6

Q ss_pred             cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC
Q 008467          217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD  296 (564)
Q Consensus       217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d  296 (564)
                      +.|.++.|.-++.-++.+..+|.|.+-|..+....           ..       ......|.+++||||+..++..+..
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-----------iv-------g~vd~GI~aaswS~Dee~l~liT~~  130 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE-----------IV-------GNVDNGISAASWSPDEELLALITGR  130 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEccccccee-----------ee-------eeccCceEEEeecCCCcEEEEEeCC
Confidence            57889999999988888889999998876653210           00       1124679999999999999999998


Q ss_pred             CeEEEEECCCceeEeec-----CCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC-cceeEEEeecccCeEEEEcCCCc
Q 008467          297 GQARIWSTNGDLKCTLS-----KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT-EEWKQQFEFHSGPTLDVDWRNNV  370 (564)
Q Consensus       297 g~i~vw~~~~~~~~~~~-----~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~  370 (564)
                      +++.+-+.+-.+...-.     .-.+....+-|-...++|= |+. |....-+... .+...... ....-..+.|+++.
T Consensus       131 ~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfr-gs~-gr~~~~~~~~~ek~~~~~~-~~~~~~~IsWRgDg  207 (1265)
T KOG1920|consen  131 QTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFR-GSE-GRQAARQKIEKEKALEQIE-QDDHKTSISWRGDG  207 (1265)
T ss_pred             cEEEEEeccccchhccccccccccccccceecccccceeee-cch-hhhcccccccccccccchh-hccCCceEEEccCC
Confidence            88887664322211110     0112223344444333321 111 1111111000 00000000 11122458899887


Q ss_pred             e-EEEE----eCC-CeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEe---CCCcEEEEeCCC---Ceeeeecc
Q 008467          371 S-FATS----STD-NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS---DDVTAKIWNMKQ---DKYVHDLR  438 (564)
Q Consensus       371 ~-~~~~----~~d-~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s---~dg~i~iwd~~~---~~~~~~~~  438 (564)
                      . |+++    ..+ ..|++|+.. +..-.+-..-.+.-.+++|-|.|.++|+-.   +|+.|.++.-+.   +..+..+.
T Consensus       208 ~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p  286 (1265)
T KOG1920|consen  208 EYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFP  286 (1265)
T ss_pred             cEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCc
Confidence            4 4442    344 789999876 221111111123345799999999998753   356788887432   22222223


Q ss_pred             cccccEEEEEEccCCCCCCCCCCcEEEEE---EeCCCeEEEEeCCCC
Q 008467          439 EHSKEIYTIRWSPTGSGTNNPNQQLILAS---ASFDSTVKLWDVELG  482 (564)
Q Consensus       439 ~~~~~i~~i~~~p~~~~~~~~~~~~~l~s---~s~dg~i~iwd~~~~  482 (564)
                      ....+|..++|+.++.         +||.   ......|++|-+.+-
T Consensus       287 ~de~~ve~L~Wns~sd---------iLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  287 LDEKEVEELAWNSNSD---------ILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             ccccchheeeecCCCC---------ceeeeecccccceEEEEEecCe
Confidence            3334589999988765         4554   344445999987653

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.47  E-value=2.2e-05  Score=80.75  Aligned_cols=177  Identities=16%  Similarity=0.370  Sum_probs=122.8

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeec
Q 008467          278 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH  357 (564)
Q Consensus       278 V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~  357 (564)
                      ++|++++  +++|+-|+-+|.+++.+.++.. .+...|...      ..+|.+++|||.||+|.|-.+-+.+...++.++
T Consensus        42 is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~  112 (846)
T KOG2066|consen   42 ISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFK  112 (846)
T ss_pred             HHHHHhh--cceeeeccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEecC
Confidence            4444443  5789999999999999998877 444445544      668999999999999999998887766666554


Q ss_pred             ccCeEEEEcCCC------ceEEEEeCCCeEEEEEcC---CCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeC
Q 008467          358 SGPTLDVDWRNN------VSFATSSTDNMIYVCKIG---ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNM  428 (564)
Q Consensus       358 ~~~~~~~~~~~~------~~~~~~~~d~~i~~~~~~---~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~  428 (564)
                      . ++..+...++      ..|++++..| +.++.-.   ...++ .+..-.|.|.++.|.  |+++|-++++| |++||.
T Consensus       113 r-piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~  186 (846)
T KOG2066|consen  113 R-PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDT  186 (846)
T ss_pred             C-cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEec--CcEEEEecCCC-cEEEec
Confidence            4 3444444433      5788888888 6555322   22222 345557899999996  88999998887 899999


Q ss_pred             CCCeeeeecccccccE------EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC
Q 008467          429 KQDKYVHDLREHSKEI------YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE  480 (564)
Q Consensus       429 ~~~~~~~~~~~~~~~i------~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~  480 (564)
                      .+++.+..+......+      ..+.|.+..          .|+-| .-.+|+|..++
T Consensus       187 ~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~----------~LVIG-W~d~v~i~~I~  233 (846)
T KOG2066|consen  187 PTRQRLTNIPPPSQSVRPELFPPHLHWQDED----------RLVIG-WGDSVKICSIK  233 (846)
T ss_pred             cccceeeccCCCCCCCCcccCCCceEecCCC----------eEEEe-cCCeEEEEEEe
Confidence            9888776665433322      335565543          24434 55688888887

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.42  E-value=4.7e-06  Score=74.32  Aligned_cols=161  Identities=14%  Similarity=0.192  Sum_probs=94.3

Q ss_pred             CCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEE
Q 008467          214 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG  293 (564)
Q Consensus       214 ~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg  293 (564)
                      .|+.+-.+-+.+--++.+++|..||.+.+.+...-..                ........+..--+.+.-..++++.++
T Consensus        87 ~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~----------------~~~~i~~~~~~~as~~~~~~~~~i~s~  150 (319)
T KOG4714|consen   87 KNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLA----------------LMSRIPSIHSGSASRKICRHGNSILSG  150 (319)
T ss_pred             ccCCCCCcccccccCCceEecCCCceEEEEechHHHh----------------hhhhcccccccccccceeecccEEecC
Confidence            3443333334445577889999999999988643100                000000000001111222234444443


Q ss_pred             eC-----CCeEEEEECCCceeEe-ecCCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEc
Q 008467          294 SY-----DGQARIWSTNGDLKCT-LSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW  366 (564)
Q Consensus       294 ~~-----dg~i~vw~~~~~~~~~-~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  366 (564)
                      ..     -+..++|+........ -..-...|.+++-+|..+ .+++|+.||.+-+||.+...                 
T Consensus       151 ~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~-----------------  213 (319)
T KOG4714|consen  151 GCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA-----------------  213 (319)
T ss_pred             CcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEccccc-----------------
Confidence            21     1234455543221110 011123488898888665 46678889999999987642                 


Q ss_pred             CCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC-CCEEEEEeCCCcEEEEeCCC
Q 008467          367 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQ  430 (564)
Q Consensus       367 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~-~~~las~s~dg~i~iwd~~~  430 (564)
                                             .|+..+..|..+|+.+-|+|. +..|++|++||.+.-||..+
T Consensus       214 -----------------------~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  214 -----------------------MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             -----------------------chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence                                   244557789999999999994 56799999999999999764

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.42  E-value=7e-05  Score=71.07  Aligned_cols=244  Identities=14%  Similarity=0.135  Sum_probs=132.3

Q ss_pred             cCCCCeEEEEECCCCC-EEEEEeCCCeEEEEECCCcee-EeecCCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCcc
Q 008467          273 EKSKDVTTLDWNGEGT-LLATGSYDGQARIWSTNGDLK-CTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEE  349 (564)
Q Consensus       273 ~~~~~V~~l~~s~~g~-~l~sg~~dg~i~vw~~~~~~~-~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~  349 (564)
                      .+...|..++|||..+ ++..++.+..|+|.|...... ..+..| .++++++|.-+. ++|+.|-..|.|.|||++..+
T Consensus       191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence            4556799999999877 788999999999999876543 345555 889999998765 568899999999999997543


Q ss_pred             e-eEEE--eecccCeEEEEcCCCc-------eEEEEeCCCeEEEEEc--CCCceeeEe-cCCCcceEEEEECCCCCE-EE
Q 008467          350 W-KQQF--EFHSGPTLDVDWRNNV-------SFATSSTDNMIYVCKI--GENRPIKTF-AGHQGEVNCVKWDPTGSL-LA  415 (564)
Q Consensus       350 ~-~~~~--~~~~~~~~~~~~~~~~-------~~~~~~~d~~i~~~~~--~~~~~~~~~-~~h~~~i~~v~~~~~~~~-la  415 (564)
                      - ...+  +....++..+......       .++....+-  ..|.+  ..+.+..++ .+..+...++++++..+. |+
T Consensus       270 ~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l--~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~  347 (463)
T KOG1645|consen  270 GPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVL--QFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLL  347 (463)
T ss_pred             chHhhhhhhhccCcceeecccCccccccccceEEeeehhh--hhhhhhccccCCCcccccCCCcceeeeeecCccceEEE
Confidence            1 1111  1122344444432211       112222211  12222  111111111 112334445555554443 33


Q ss_pred             EEeCCCc---EE---E-EeCCCCeeeeecc-cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEE
Q 008467          416 SCSDDVT---AK---I-WNMKQDKYVHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYS  487 (564)
Q Consensus       416 s~s~dg~---i~---i-wd~~~~~~~~~~~-~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~  487 (564)
                      |.-.+-.   ++   . -|...+.++..-+ .+.+. +.-..+........++...++..+...+.+.+||+.+.+.+.+
T Consensus       348 tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs-~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~  426 (463)
T KOG1645|consen  348 TYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGS-KQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQT  426 (463)
T ss_pred             EecCCCCCccceeeeeeeccccCceeeeecccccCC-cccccccccceeccccccEEEEecCCcceeEEeccchhheeee
Confidence            3332210   00   0 0111222221111 11000 0000000000011223345677788889999999999999988


Q ss_pred             EeCCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEeCC
Q 008467          488 LNGHREPVYSLAFSPT--GEYLASGSLDKSMHIWSLK  522 (564)
Q Consensus       488 ~~~h~~~i~~~~~spd--g~~lasgs~dg~i~iw~~~  522 (564)
                      +.- ..+|.+++....  +.||++-..| .++||..+
T Consensus       427 l~~-~epv~Dicp~~~n~~syLa~LTd~-~v~Iyk~e  461 (463)
T KOG1645|consen  427 LAL-SEPVLDICPNDTNGSSYLALLTDD-RVHIYKNE  461 (463)
T ss_pred             ccc-CcceeecceeecCCcchhhheecc-eEEEEecC
Confidence            863 478998876543  4577766644 58888654

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.42  E-value=7.5e-05  Score=76.71  Aligned_cols=171  Identities=11%  Similarity=0.150  Sum_probs=101.9

Q ss_pred             eEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCC
Q 008467          380 MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNP  459 (564)
Q Consensus       380 ~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~  459 (564)
                      .+.+.|..+.+...+..- .+....++++|+|+++++.+.+.       ..+..+..+...... ..+.|.+.+.....+
T Consensus       216 ~vSvID~etmeV~~qV~V-dgnpd~v~~spdGk~afvTsyNs-------E~G~tl~em~a~e~d-~~vvfni~~iea~vk  286 (635)
T PRK02888        216 LFTAVDAETMEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNS-------EEGVTLAEMMAAERD-WVVVFNIARIEEAVK  286 (635)
T ss_pred             EEEEEECccceEEEEEEe-CCCcccceECCCCCEEEEeccCc-------ccCcceeeeccccCc-eEEEEchHHHHHhhh
Confidence            344455544333332221 11334578899999987776321       111112222111111 334444332111122


Q ss_pred             CCcEEEEEEeCCCeEEEEeCCC----C-eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCe--------
Q 008467          460 NQQLILASASFDSTVKLWDVEL----G-KLLYSLNGHREPVYSLAFSPTGEYLASGS-LDKSMHIWSLKEGK--------  525 (564)
Q Consensus       460 ~~~~~l~s~s~dg~i~iwd~~~----~-~~~~~~~~h~~~i~~~~~spdg~~lasgs-~dg~i~iw~~~~~~--------  525 (564)
                      +.+...+   .++.|.+.|.++    + +.+..+. -......+.+||||+++++++ .+.+|.|.|+.+.+        
T Consensus       287 dGK~~~V---~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~  362 (635)
T PRK02888        287 AGKFKTI---GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK  362 (635)
T ss_pred             CCCEEEE---CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence            2333333   267899999998    3 4444444 334568899999999987655 58999999998754        


Q ss_pred             ----EEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          526 ----IVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       526 ----~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                          ++....-.-+....+|+++|+...+.+.|..|+.||+.
T Consensus       363 ~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~  404 (635)
T PRK02888        363 PRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIE  404 (635)
T ss_pred             ccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehH
Confidence                24444434456789999999988899999999999964

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.39  E-value=8e-05  Score=75.75  Aligned_cols=146  Identities=15%  Similarity=0.251  Sum_probs=101.6

Q ss_pred             CccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEe
Q 008467          215 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS  294 (564)
Q Consensus       215 h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~  294 (564)
                      |...|.-.+++..+++++.|+.-|.+.+|+-..+....            ...    ......+.....|++..++|.|+
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~------------~~~----~~~~~~~~~~~vs~~e~lvAagt   95 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRK------------LKN----EGATGITCVRSVSSVEYLVAAGT   95 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhc------------ccc----cCccceEEEEEecchhHhhhhhc
Confidence            34456666788889999999999999999866543211            000    01234466678899999999999


Q ss_pred             CCCeEEEEECCCc----eeEee---cCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcc----eeEEEeecccCeEE
Q 008467          295 YDGQARIWSTNGD----LKCTL---SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE----WKQQFEFHSGPTLD  363 (564)
Q Consensus       295 ~dg~i~vw~~~~~----~~~~~---~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~----~~~~~~~~~~~~~~  363 (564)
                      ..|.|.|+..+..    +...-   ..|+..|++++|++++..+++|..-|+|.+--+.+..    ..+.+....+.++.
T Consensus        96 ~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQ  175 (726)
T KOG3621|consen   96 ASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQ  175 (726)
T ss_pred             CCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEE
Confidence            9999999975432    22111   2378899999999999999999999999998877621    12223334456777


Q ss_pred             EEcCCCceEEEEe
Q 008467          364 VDWRNNVSFATSS  376 (564)
Q Consensus       364 ~~~~~~~~~~~~~  376 (564)
                      ++......+++..
T Consensus       176 lD~~q~~LLVStl  188 (726)
T KOG3621|consen  176 LDYLQSYLLVSTL  188 (726)
T ss_pred             eecccceehHhhh
Confidence            7776665555443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.36  E-value=0.00014  Score=75.65  Aligned_cols=212  Identities=11%  Similarity=0.094  Sum_probs=134.4

Q ss_pred             EECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCC-EEEEEeCCCCCEEEEeeCCC-----cEEEEECCCcceeEEEe
Q 008467          282 DWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGP-IFSLKWNKKGDYLLTGSCDK-----TAIVWDVKTEEWKQQFE  355 (564)
Q Consensus       282 ~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~-V~~l~~~~~~~~l~s~s~D~-----~v~iwd~~~~~~~~~~~  355 (564)
                      +|++.+..++.|+.+|.|.+.+..-.....+..+... |..+....+.++|++.+.|+     .++|||+..-+--.   
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~---  106 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN---  106 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC---
Confidence            5788999999999999999998776666777777777 55554333446788877765     48999986432000   


Q ss_pred             ecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCC--Ce-
Q 008467          356 FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ--DK-  432 (564)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~--~~-  432 (564)
                         .|- .+              +..+++...       +.....++.+++.+.+-+.+|.|-.+|.|.++.-+-  .+ 
T Consensus       107 ---sP~-c~--------------~~~ri~~~~-------np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrg  161 (933)
T KOG2114|consen  107 ---SPQ-CL--------------YEHRIFTIK-------NPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRG  161 (933)
T ss_pred             ---Ccc-ee--------------eeeeeeccC-------CCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccc
Confidence               000 00              001111110       111345688899999999999999999999885321  11 


Q ss_pred             -eeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE-EEEEeCCCCCEEEEEEcCCCCEEEEE
Q 008467          433 -YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-LYSLNGHREPVYSLAFSPTGEYLASG  510 (564)
Q Consensus       433 -~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~h~~~i~~~~~spdg~~lasg  510 (564)
                       ...-...-..+|+.+.+..++..        .+.. .....|.+|.+....+ +..+..|..+.+|.+|++...-+++|
T Consensus       162 sr~~~~~~~~~pITgL~~~~d~~s--------~lFv-~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca  232 (933)
T KOG2114|consen  162 SRQDYSHRGKEPITGLALRSDGKS--------VLFV-ATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICA  232 (933)
T ss_pred             cceeeeccCCCCceeeEEecCCce--------eEEE-EecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEe
Confidence             11111223568999999877652        1222 2346799999883332 44577888899999999866634444


Q ss_pred             eCCCcEEEEeCCCCeEEEEEe
Q 008467          511 SLDKSMHIWSLKEGKIVKTYT  531 (564)
Q Consensus       511 s~dg~i~iw~~~~~~~~~~~~  531 (564)
                      +.. .|.+|+....++-.+|.
T Consensus       233 ~~e-~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  233 GSE-FLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             cCc-eEEEEcCCCcceeeeec
Confidence            434 48999987655544554

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.34  E-value=0.00039  Score=65.52  Aligned_cols=203  Identities=19%  Similarity=0.259  Sum_probs=134.5

Q ss_pred             EEEEeCCC-CCEEEEeeCCCc-EEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecC
Q 008467          320 FSLKWNKK-GDYLLTGSCDKT-AIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG  397 (564)
Q Consensus       320 ~~l~~~~~-~~~l~s~s~D~~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~  397 (564)
                      ..++.+|. ...++.+-.-|+ ..+||..+++....+..                                 .+-+.|.|
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a---------------------------------~~gRHFyG   54 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA---------------------------------PPGRHFYG   54 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC---------------------------------CCCCEEec
Confidence            45677884 445556666665 56788888775544321                                 11245667


Q ss_pred             CCcceEEEEECCCCCEEEEEe-----CCCcEEEEeCC-CCeeeeecccccccEEEEEEccCCCC--------CCCCCC-c
Q 008467          398 HQGEVNCVKWDPTGSLLASCS-----DDVTAKIWNMK-QDKYVHDLREHSKEIYTIRWSPTGSG--------TNNPNQ-Q  462 (564)
Q Consensus       398 h~~~i~~v~~~~~~~~las~s-----~dg~i~iwd~~-~~~~~~~~~~~~~~i~~i~~~p~~~~--------~~~~~~-~  462 (564)
                      |      ..||+||++|++.=     ..|.|-|||.. +-+.+.++..|.-.-..+.+.|++..        ..+|+. .
T Consensus        55 H------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR  128 (305)
T PF07433_consen   55 H------GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGR  128 (305)
T ss_pred             C------EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCc
Confidence            7      56999999998753     35789999998 56667778777666677788888731        112221 2


Q ss_pred             EEEEEEeCCCeEEEEeCCCCeEEEE--E--eCCCCCEEEEEEcCCCCEEEEEeCCCc-------EEEEeCCCCeEEEEEe
Q 008467          463 LILASASFDSTVKLWDVELGKLLYS--L--NGHREPVYSLAFSPTGEYLASGSLDKS-------MHIWSLKEGKIVKTYT  531 (564)
Q Consensus       463 ~~l~s~s~dg~i~iwd~~~~~~~~~--~--~~h~~~i~~~~~spdg~~lasgs~dg~-------i~iw~~~~~~~~~~~~  531 (564)
                      .-|--..++.++.+.|..+|+.+..  +  ..|...|..++++++|..++..-..|.       |-+++  .++.+..+.
T Consensus       129 ~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~  206 (305)
T PF07433_consen  129 AKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLP  206 (305)
T ss_pred             eecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceecc
Confidence            2344455677888888899988765  4  347788999999999998887655442       33333  233333332


Q ss_pred             c--------CCCEEEEEEccCCCEEEEEEc-CCcEEEEEee
Q 008467          532 G--------NGGIFEVCWNKEGDKIAACFA-NHTVCVLDFR  563 (564)
Q Consensus       532 ~--------~~~i~~~~w~~~g~~la~~~~-~~~v~v~~~~  563 (564)
                      .        .+-+-+|+++++|..+|+.+- .+.+.|||..
T Consensus       207 ~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~  247 (305)
T PF07433_consen  207 APEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAA  247 (305)
T ss_pred             CChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECC
Confidence            2        345789999999998876654 5678899753

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.33  E-value=0.0002  Score=72.80  Aligned_cols=258  Identities=9%  Similarity=0.037  Sum_probs=144.1

Q ss_pred             CCEEEEEeCCCeEEEEECC-CceeEeecCCC---------C-CEE-EEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEE
Q 008467          287 GTLLATGSYDGQARIWSTN-GDLKCTLSKHK---------G-PIF-SLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF  354 (564)
Q Consensus       287 g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~---------~-~V~-~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  354 (564)
                      +..+++++.+|.+..+|.. |+......-..         . .+. .+.  -.+..++.++.++.+..+|..+|+.+-..
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~  146 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVT--VAGGKVYIGSEKGQVYALNAEDGEVAWQT  146 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccE--EECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence            3455666666777777753 44443322111         0 000 011  13567788889999999999999876555


Q ss_pred             eecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcce-----EEEEECCCCCEEEEEeCCCcEEEEeCC
Q 008467          355 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEV-----NCVKWDPTGSLLASCSDDVTAKIWNMK  429 (564)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i-----~~v~~~~~~~~las~s~dg~i~iwd~~  429 (564)
                      ..... +...-...+..++.+..++.++-+|..+++.+-.+......+     .+...  .+..++.++.+|.+..+|..
T Consensus       147 ~~~~~-~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~  223 (394)
T PRK11138        147 KVAGE-ALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLME  223 (394)
T ss_pred             cCCCc-eecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEcc
Confidence            43321 111000113345556778889988988887665543221100     01111  12346667788999888988


Q ss_pred             CCeeeeecccccc----c---EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcC
Q 008467          430 QDKYVHDLREHSK----E---IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSP  502 (564)
Q Consensus       430 ~~~~~~~~~~~~~----~---i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp  502 (564)
                      +++.+........    .   ...+.-+|.-     .++  .+..++.+|.+..+|..+|+.++...-.  ....+.  .
T Consensus       224 ~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v-----~~~--~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~--~  292 (394)
T PRK11138        224 QGQLIWQQRISQPTGATEIDRLVDVDTTPVV-----VGG--VVYALAYNGNLVALDLRSGQIVWKREYG--SVNDFA--V  292 (394)
T ss_pred             CChhhheeccccCCCccchhcccccCCCcEE-----ECC--EEEEEEcCCeEEEEECCCCCEEEeecCC--CccCcE--E
Confidence            8776543321100    0   0001111100     011  3455678999999999999988765421  111222  2


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEEec-CCC-EEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467          503 TGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGG-IFEVCWNKEGDKIAACFANHTVCVLDF  562 (564)
Q Consensus       503 dg~~lasgs~dg~i~iw~~~~~~~~~~~~~-~~~-i~~~~w~~~g~~la~~~~~~~v~v~~~  562 (564)
                      ++..|..++.+|.|..+|..+|+.+..... ... ..+...  .+.+|.++..+|.+.++|.
T Consensus       293 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~  352 (394)
T PRK11138        293 DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINR  352 (394)
T ss_pred             ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEEC
Confidence            466777788999999999999987665432 111 111111  2556777778888887775

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.33  E-value=6e-07  Score=92.42  Aligned_cols=263  Identities=16%  Similarity=0.218  Sum_probs=162.9

Q ss_pred             eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467          209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  288 (564)
Q Consensus       209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  288 (564)
                      +..++.|+...+||+|+-+.+.|+.|+-.|.|+++++.+|..                 .++.+.|...|+.+.=+.||.
T Consensus      1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~-----------------e~s~ncH~SavT~vePs~dgs 1156 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM-----------------EESVNCHQSAVTLVEPSVDGS 1156 (1516)
T ss_pred             chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc-----------------cccccccccccccccccCCcc
Confidence            456788999999999999999999999999999999987743                 234456778899998888998


Q ss_pred             EEEEEeCC-C-eEEEEECCC--ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeec-ccC---
Q 008467          289 LLATGSYD-G-QARIWSTNG--DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH-SGP---  360 (564)
Q Consensus       289 ~l~sg~~d-g-~i~vw~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-~~~---  360 (564)
                      .+++.+.- . ...+|+...  ..+.++.    .-.+++|+.....-+.|..-....+||+.|+....++... ...   
T Consensus      1157 ~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~ 1232 (1516)
T KOG1832|consen 1157 TQLTSSSSSSPLSALWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYS 1232 (1516)
T ss_pred             eeeeeccccCchHHHhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhh
Confidence            77765443 3 567898653  3333333    2356888876544445555567899999998765553211 100   


Q ss_pred             eEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccc
Q 008467          361 TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH  440 (564)
Q Consensus       361 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~  440 (564)
                      -....|.+...++.  .||  .+||++....+..|...+..+ .-.|+|.|.-++.-++     |||+++.+.++.+..-
T Consensus      1233 ~n~a~FsP~D~LIl--ndG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~L 1302 (1516)
T KOG1832|consen 1233 NNLAHFSPCDTLIL--NDG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSL 1302 (1516)
T ss_pred             ccccccCCCcceEe--eCc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeech-----hhhhHHHHHHhcCccc
Confidence            01112222222211  222  368888777777665444222 3458999999887764     8999998877665433


Q ss_pred             cccEEEEEEccCCCCCC-------------CCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEE
Q 008467          441 SKEIYTIRWSPTGSGTN-------------NPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYL  507 (564)
Q Consensus       441 ~~~i~~i~~~p~~~~~~-------------~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~l  507 (564)
                      ..  ..+.|...|...-             .+.-+.-|.+     ..|-+|...-+.+.++.. ..+|..++-+|...+|
T Consensus      1303 dq--c~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fS-----SFRTf~a~dYs~iaTi~v-~R~~~Dlct~~~D~~l 1374 (1516)
T KOG1832|consen 1303 DQ--CAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFS-----SFRTFDAIDYSDIATIPV-DRCLLDLCTEPTDSFL 1374 (1516)
T ss_pred             cc--eEEEeccCccchhhhhhhhhhhhhhcccccccchhh-----hhccccccccccceeeec-ccchhhhhcCCccceE
Confidence            32  4556665553100             0000000111     133445555555666654 3567888888888888


Q ss_pred             EEE
Q 008467          508 ASG  510 (564)
Q Consensus       508 asg  510 (564)
                      +.-
T Consensus      1375 ~vI 1377 (1516)
T KOG1832|consen 1375 GVI 1377 (1516)
T ss_pred             EEE
Confidence            764

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.31  E-value=1.6e-05  Score=82.74  Aligned_cols=178  Identities=16%  Similarity=0.175  Sum_probs=127.1

Q ss_pred             ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEE
Q 008467          370 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW  449 (564)
Q Consensus       370 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~  449 (564)
                      ..++.++-...+..+|+...+..+...-..+.|.-++.  +++++.+|...|+|.+-|.++.+.++++.+|++.|..+..
T Consensus       148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv  225 (1118)
T KOG1275|consen  148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV  225 (1118)
T ss_pred             cceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec
Confidence            34555555566666777666655544433434554544  5789999999999999999999999999999998887655


Q ss_pred             ccCCCCCCCCCCcEEEEEEeC---------CCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEE
Q 008467          450 SPTGSGTNNPNQQLILASASF---------DSTVKLWDVELGKLLYSLNGHREPVYSLAFSPT-GEYLASGSLDKSMHIW  519 (564)
Q Consensus       450 ~p~~~~~~~~~~~~~l~s~s~---------dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spd-g~~lasgs~dg~i~iw  519 (564)
                      +-+           +|++|+.         |..|+|||++.-+.+.-+.-+.+| .-+.|.|. ...+|.++..|...+-
T Consensus       226 ~GN-----------lLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~v  293 (1118)
T KOG1275|consen  226 QGN-----------LLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFV  293 (1118)
T ss_pred             cCC-----------eEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeec
Confidence            321           5667664         567899999977766544444444 45678886 4678888889999998


Q ss_pred             eCCC---C-eEEEEEec-CCCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467          520 SLKE---G-KIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVLD  561 (564)
Q Consensus       520 ~~~~---~-~~~~~~~~-~~~i~~~~w~~~g~~la~~~~~~~v~v~~  561 (564)
                      |..+   - .-+..... ...+..+++++.|+.||.|-.+|.|.+|-
T Consensus       294 d~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  294 DTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             cccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            8332   1 11222222 33489999999999999999999999983

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.31  E-value=0.00088  Score=63.20  Aligned_cols=177  Identities=16%  Similarity=0.184  Sum_probs=110.6

Q ss_pred             ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEEC-CCCCEEEEEeCCCcEEEEeCCCCeeeeeccc-----cccc
Q 008467          370 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWD-PTGSLLASCSDDVTAKIWNMKQDKYVHDLRE-----HSKE  443 (564)
Q Consensus       370 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~-~~~~~las~s~dg~i~iwd~~~~~~~~~~~~-----~~~~  443 (564)
                      ..+.+....+.|+.++........ +....  ...+++. +++.+++ +... .+.++|..+++....+..     ....
T Consensus        13 ~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v-~~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~   87 (246)
T PF08450_consen   13 RLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYV-ADSG-GIAVVDPDTGKVTVLADLPDGGVPFNR   87 (246)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEE-EETT-CEEEEETTTTEEEEEEEEETTCSCTEE
T ss_pred             EEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEE-EEcC-ceEEEecCCCcEEEEeeccCCCcccCC
Confidence            344555567778888877665432 22111  6677777 6665554 4444 455669888754332222     2345


Q ss_pred             EEEEEEccCCCCCCCCCCcEEEEEEeCC--------CeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEE-EEeCCC
Q 008467          444 IYTIRWSPTGSGTNNPNQQLILASASFD--------STVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLA-SGSLDK  514 (564)
Q Consensus       444 i~~i~~~p~~~~~~~~~~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~la-sgs~dg  514 (564)
                      ...+++.|+|.         +.++....        |.|..++.. ++...... .-...+.|+|+||++.|. +-+..+
T Consensus        88 ~ND~~vd~~G~---------ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~  156 (246)
T PF08450_consen   88 PNDVAVDPDGN---------LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNG  156 (246)
T ss_dssp             EEEEEE-TTS----------EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTT
T ss_pred             CceEEEcCCCC---------EEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccc
Confidence            67888888875         44444433        567777777 55443333 234568999999998765 567788


Q ss_pred             cEEEEeCCC-Ce-E--EEEE---ecCC-CEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467          515 SMHIWSLKE-GK-I--VKTY---TGNG-GIFEVCWNKEGDKIAACFANHTVCVLDF  562 (564)
Q Consensus       515 ~i~iw~~~~-~~-~--~~~~---~~~~-~i~~~~w~~~g~~la~~~~~~~v~v~~~  562 (564)
                      .|..|++.. +. +  ...+   .... ..-.++++.+|+..++.+.++.|.++|-
T Consensus       157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p  212 (246)
T PF08450_consen  157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDP  212 (246)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEET
T ss_pred             eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECC
Confidence            899999853 22 2  1222   2222 3678999999999999999999999873

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.23  E-value=0.0049  Score=64.35  Aligned_cols=298  Identities=12%  Similarity=0.157  Sum_probs=159.4

Q ss_pred             CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeE--EEEECCCCCEEEEEeCCCeEEEEECC
Q 008467          228 GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVT--TLDWNGEGTLLATGSYDGQARIWSTN  305 (564)
Q Consensus       228 ~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--~l~~s~~g~~l~sg~~dg~i~vw~~~  305 (564)
                      +..++.++.|+.+.-.|..+++.........           ........+.  .+... ++..++.++.+|.|+.+|..
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~-----------~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~  128 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKL-----------PADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAE  128 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCC-----------CccccccccccCCcEEc-cCCeEEEecCCCeEEEEECC
Confidence            4556667778888888888776432211100           0000000000  01111 22567778889999999974


Q ss_pred             -CceeEeecCCCC--CEEEEEeCC--CCCEEEEee---------CCCcEEEEECCCcceeEEEeecccCe----------
Q 008467          306 -GDLKCTLSKHKG--PIFSLKWNK--KGDYLLTGS---------CDKTAIVWDVKTEEWKQQFEFHSGPT----------  361 (564)
Q Consensus       306 -~~~~~~~~~h~~--~V~~l~~~~--~~~~l~s~s---------~D~~v~iwd~~~~~~~~~~~~~~~~~----------  361 (564)
                       |+.+-.+.....  .-..+.-+|  .+..++.++         .++.+...|..+++.+-.+.......          
T Consensus       129 TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~  208 (488)
T cd00216         129 TGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDR  208 (488)
T ss_pred             CCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCc
Confidence             555544432211  000011111  123444543         36788999999998776655431110          


Q ss_pred             -------------EEEEcCCCceEEEEeCCC------------------eEEEEEcCCCceeeEec--CCC--------c
Q 008467          362 -------------LDVDWRNNVSFATSSTDN------------------MIYVCKIGENRPIKTFA--GHQ--------G  400 (564)
Q Consensus       362 -------------~~~~~~~~~~~~~~~~d~------------------~i~~~~~~~~~~~~~~~--~h~--------~  400 (564)
                                   ..++... ..++.++.++                  .++-.+..+++.+-.+.  .|.        .
T Consensus       209 ~~~~~~g~~vw~~pa~d~~~-g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~  287 (488)
T cd00216         209 QMWGPGGGTSWASPTYDPKT-NLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQ  287 (488)
T ss_pred             ceecCCCCCccCCeeEeCCC-CEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCC
Confidence                         0111112 2333333332                  67777887777665543  111        1


Q ss_pred             ce-EEEEECCCCC---EEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEE---------
Q 008467          401 EV-NCVKWDPTGS---LLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAS---------  467 (564)
Q Consensus       401 ~i-~~v~~~~~~~---~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s---------  467 (564)
                      .+ ..+. .-++.   .++.++.+|.+...|.++++.+-......   ..+...|         +..++.+         
T Consensus       288 p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~---------~~vyv~~~~~~~~~~~  354 (488)
T cd00216         288 PSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP---------GLVYLGAFHIPLGLPP  354 (488)
T ss_pred             CeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC---------ceEEEccccccccCcc
Confidence            11 0110 11333   57788899999999999998775432110   0111111         1111111         


Q ss_pred             -------EeCCCeEEEEeCCCCeEEEEEeCCC--------CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec
Q 008467          468 -------ASFDSTVKLWDVELGKLLYSLNGHR--------EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG  532 (564)
Q Consensus       468 -------~s~dg~i~iwd~~~~~~~~~~~~h~--------~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~  532 (564)
                             ...+|.|.-.|+.+|+.+.+.....        .+...-...-.+..|+.++.||.|+.+|.++|+++..++.
T Consensus       355 ~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~  434 (488)
T cd00216         355 QKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRT  434 (488)
T ss_pred             cccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence                   1246789999999999988765321        1111111112567888899999999999999999998876


Q ss_pred             CCCEE--EEEEccCCCEEEEE
Q 008467          533 NGGIF--EVCWNKEGDKIAAC  551 (564)
Q Consensus       533 ~~~i~--~~~w~~~g~~la~~  551 (564)
                      .+.+.  -+.+..+|+..++.
T Consensus       435 ~~~~~a~P~~~~~~g~~yv~~  455 (488)
T cd00216         435 PSGIQATPMTYEVNGKQYVGV  455 (488)
T ss_pred             CCCceEcCEEEEeCCEEEEEE
Confidence            55553  24566677544433

The alignment model contains an 8-bladed beta-propeller.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.22  E-value=0.0017  Score=64.80  Aligned_cols=290  Identities=16%  Similarity=0.219  Sum_probs=147.0

Q ss_pred             CCCCCEEEEE---------ECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeC
Q 008467          225 SPAGSLLASG---------SGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY  295 (564)
Q Consensus       225 sp~~~~lasg---------s~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~  295 (564)
                      |||+++++..         +..+...|||+.++...              ....    ....+....|||+|+.++... 
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~--------------~l~~----~~~~~~~~~~sP~g~~~~~v~-   61 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEIT--------------PLTP----PPPKLQDAKWSPDGKYIAFVR-   61 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEE--------------ESS-----EETTBSEEEE-SSSTEEEEEE-
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceE--------------ECcC----CccccccceeecCCCeeEEEe-
Confidence            5777766653         22456778888765321              0000    024577889999999998876 


Q ss_pred             CCeEEEEECCCceeEeec--C-------C---------CCCEEEEEeCCCCCEEEEeeCCC-cEEEEEC---CCcceeEE
Q 008467          296 DGQARIWSTNGDLKCTLS--K-------H---------KGPIFSLKWNKKGDYLLTGSCDK-TAIVWDV---KTEEWKQQ  353 (564)
Q Consensus       296 dg~i~vw~~~~~~~~~~~--~-------h---------~~~V~~l~~~~~~~~l~s~s~D~-~v~iwd~---~~~~~~~~  353 (564)
                      ++.|.+++..+.....+.  +       -         -+.-.++-|||+|++|+....|. .|..+.+   ....-   
T Consensus        62 ~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~---  138 (353)
T PF00930_consen   62 DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS---  138 (353)
T ss_dssp             TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE---
T ss_pred             cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc---
Confidence            578999976543332221  1       0         01124678999999998776653 3444332   11100   


Q ss_pred             EeecccCeEEEEcCCCceEEEEeC--CCeEEEEEcCCCceee--Ee---cCCCcceEEEEECCCCC-EEE-EEeCCC---
Q 008467          354 FEFHSGPTLDVDWRNNVSFATSST--DNMIYVCKIGENRPIK--TF---AGHQGEVNCVKWDPTGS-LLA-SCSDDV---  421 (564)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~--d~~i~~~~~~~~~~~~--~~---~~h~~~i~~v~~~~~~~-~la-s~s~dg---  421 (564)
                         .-..+..+.+..     .+..  .-.++++++.+++...  ..   ..-...+..+.|.++++ +++ ....+.   
T Consensus       139 ---~yp~~~~~~YPk-----~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~  210 (353)
T PF00930_consen  139 ---QYPEVESIRYPK-----AGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRL  210 (353)
T ss_dssp             ---SS-EEEEEE--B-----TTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEE
T ss_pred             ---cCCcccccccCC-----CCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEE
Confidence               000011111100     0001  1135667776665422  11   23345688999999998 333 333333   


Q ss_pred             cEEEEeCCCCeeeeecccc-cccE---EEEEEc-cCCCCCCCCCCcEEEEEEeCCCeEEE--EeCCCCeEEEEEeCCCCC
Q 008467          422 TAKIWNMKQDKYVHDLREH-SKEI---YTIRWS-PTGSGTNNPNQQLILASASFDSTVKL--WDVELGKLLYSLNGHREP  494 (564)
Q Consensus       422 ~i~iwd~~~~~~~~~~~~~-~~~i---~~i~~~-p~~~~~~~~~~~~~l~s~s~dg~i~i--wd~~~~~~~~~~~~h~~~  494 (564)
                      .+.+.|..++.....+... ...|   ....|. +++        ..+|.....||--+|  .+...+. ...++...-.
T Consensus       211 ~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~--------~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~  281 (353)
T PF00930_consen  211 DLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDG--------NEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWE  281 (353)
T ss_dssp             EEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTS--------SEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-
T ss_pred             EEEEEECCCCceeEEEEecCCcceeeecccccccCCC--------CEEEEEEEcCCCcEEEEEcccccc-eeccccCcee
Confidence            3556676655432222111 1111   122332 332        234444457775444  4555444 4455555556


Q ss_pred             EEE-EEEcCCCCEEE-EEeCC----CcEEEEeCC-CCeEEEEEecCCCE-EEEEEccCCCEEEEEEcC
Q 008467          495 VYS-LAFSPTGEYLA-SGSLD----KSMHIWSLK-EGKIVKTYTGNGGI-FEVCWNKEGDKIAACFAN  554 (564)
Q Consensus       495 i~~-~~~spdg~~la-sgs~d----g~i~iw~~~-~~~~~~~~~~~~~i-~~~~w~~~g~~la~~~~~  554 (564)
                      |.. +.|+++++.|. +|..+    ..|+.-++. .++ ++.++...+. +.++|||+|++++..+.+
T Consensus       282 V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~-~~~LT~~~~~~~~~~~Spdg~y~v~~~s~  348 (353)
T PF00930_consen  282 VTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE-PKCLTCEDGDHYSASFSPDGKYYVDTYSG  348 (353)
T ss_dssp             EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE-EEESSTTSSTTEEEEE-TTSSEEEEEEES
T ss_pred             ecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC-eEeccCCCCCceEEEECCCCCEEEEEEcC
Confidence            755 67899877654 55543    245555666 444 4444443333 699999999988866543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.22  E-value=0.00028  Score=71.21  Aligned_cols=141  Identities=20%  Similarity=0.242  Sum_probs=83.6

Q ss_pred             EEEECCCCCEEEEE-eCCCcEEEE--eCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEE--e
Q 008467          404 CVKWDPTGSLLASC-SDDVTAKIW--NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW--D  478 (564)
Q Consensus       404 ~v~~~~~~~~las~-s~dg~i~iw--d~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iw--d  478 (564)
                      ..+|+|||+.|+-+ ..||...||  |+.++... .+..-.+.-..-.|+|+|.        .++.+.+..|.-.||  |
T Consensus       242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~-~Lt~~~gi~~~Ps~spdG~--------~ivf~Sdr~G~p~I~~~~  312 (425)
T COG0823         242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP-RLTNGFGINTSPSWSPDGS--------KIVFTSDRGGRPQIYLYD  312 (425)
T ss_pred             CccCCCCCCEEEEEECCCCCccEEEEcCCCCcce-ecccCCccccCccCCCCCC--------EEEEEeCCCCCcceEEEC
Confidence            46799999887654 457765554  66555532 2332222223445666664        466666677765554  5


Q ss_pred             CCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC-CCc--EEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcC
Q 008467          479 VELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL-DKS--MHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN  554 (564)
Q Consensus       479 ~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~-dg~--i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~  554 (564)
                      .+.+.. ..++.....-..-.|||||++|+..+. +|.  |.+.++.++.....+.........+|.++|+.+...+..
T Consensus       313 ~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~  390 (425)
T COG0823         313 LEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQ  390 (425)
T ss_pred             CCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccC
Confidence            554333 333333222236789999999987764 344  777777666545555444445567888888877765443

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.20  E-value=0.00089  Score=69.85  Aligned_cols=271  Identities=11%  Similarity=0.085  Sum_probs=146.5

Q ss_pred             CEEEEEeCCCeEEEEECC-CceeEeecCCCC------CEE--EEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecc
Q 008467          288 TLLATGSYDGQARIWSTN-GDLKCTLSKHKG------PIF--SLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS  358 (564)
Q Consensus       288 ~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~------~V~--~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~  358 (564)
                      ..+..++.++.+...|.. |+.+-.+.....      ++.  .+... ++..++.++.++.|..+|.++++.+-.+....
T Consensus        62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~  140 (488)
T cd00216          62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNND  140 (488)
T ss_pred             CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence            345566667877777753 444333322111      111  01111 22678888899999999999998776654432


Q ss_pred             cC--eEEE----EcCCCceEEEE--------eCCCeEEEEEcCCCceeeEecCCCc--------------------ce-E
Q 008467          359 GP--TLDV----DWRNNVSFATS--------STDNMIYVCKIGENRPIKTFAGHQG--------------------EV-N  403 (564)
Q Consensus       359 ~~--~~~~----~~~~~~~~~~~--------~~d~~i~~~~~~~~~~~~~~~~h~~--------------------~i-~  403 (564)
                      ..  ...+    ...++..++.+        ..++.++.+|..+++.+-.+.....                    .+ .
T Consensus       141 ~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~  220 (488)
T cd00216         141 QVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWA  220 (488)
T ss_pred             CcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccC
Confidence            10  0000    11122233322        2357788888877776544432110                    11 1


Q ss_pred             EEEECCCCCEEEEEeCCC------------------cEEEEeCCCCeeeeecccccccEE--EEEEccCCCC--CCCCCC
Q 008467          404 CVKWDPTGSLLASCSDDV------------------TAKIWNMKQDKYVHDLREHSKEIY--TIRWSPTGSG--TNNPNQ  461 (564)
Q Consensus       404 ~v~~~~~~~~las~s~dg------------------~i~iwd~~~~~~~~~~~~~~~~i~--~i~~~p~~~~--~~~~~~  461 (564)
                      ..++++.+.+++.++.++                  .+.-.|.++++.+-.++.-.....  .....|.-..  ..+...
T Consensus       221 ~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~  300 (488)
T cd00216         221 SPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKP  300 (488)
T ss_pred             CeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCe
Confidence            244555566777777665                  688888888887765432111111  0000010000  000111


Q ss_pred             cEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEE-----------------EeCCCcEEEEeCCCC
Q 008467          462 QLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS-----------------GSLDKSMHIWSLKEG  524 (564)
Q Consensus       462 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~las-----------------gs~dg~i~iw~~~~~  524 (564)
                      ..+++.++.+|.+...|.++|+.++.....   ...++.+| +..++.                 ...+|.|.-.|+.+|
T Consensus       301 ~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG  376 (488)
T cd00216         301 VPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG  376 (488)
T ss_pred             eEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCC
Confidence            135777888999999999999998876421   12234445 222221                 124678999999999


Q ss_pred             eEEEEEecC---------CCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          525 KIVKTYTGN---------GGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       525 ~~~~~~~~~---------~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      +.+......         .....-.--..+..|.+++.+|.+.-+|.+
T Consensus       377 ~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~  424 (488)
T cd00216         377 KVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDAT  424 (488)
T ss_pred             cEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECC
Confidence            988776543         111110111256778888888888887753

The alignment model contains an 8-bladed beta-propeller.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=6.5e-05  Score=71.31  Aligned_cols=240  Identities=13%  Similarity=0.149  Sum_probs=137.7

Q ss_pred             eecCCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCC-C-ceEEEEeCCCeEEEEEcC
Q 008467          311 TLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-N-VSFATSSTDNMIYVCKIG  387 (564)
Q Consensus       311 ~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~d~~i~~~~~~  387 (564)
                      .+..|...|..++|+|..+ .+..++.++.|+|.|+++..++..+..+ .++.+.+|.- + ..+.++-..|.|+++|++
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R  266 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR  266 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence            5678888999999999887 6788999999999999999998888877 6788888853 3 345677788999999997


Q ss_pred             CCc-eeeEecC--CCcceEEE------EECCCCCEEEEEeCCCcEEEEeCCC--Ceeeeecc-cccccEEEEEEccCCCC
Q 008467          388 ENR-PIKTFAG--HQGEVNCV------KWDPTGSLLASCSDDVTAKIWNMKQ--DKYVHDLR-EHSKEIYTIRWSPTGSG  455 (564)
Q Consensus       388 ~~~-~~~~~~~--h~~~i~~v------~~~~~~~~las~s~dg~i~iwd~~~--~~~~~~~~-~~~~~i~~i~~~p~~~~  455 (564)
                      ... ++..+.+  ...+|..+      ...+.|.+++..+.+  +..|.+..  +.....+. ...+.+.+..+.+..  
T Consensus       267 ~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~s--  342 (463)
T KOG1645|consen  267 QPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVS--  342 (463)
T ss_pred             CCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCcc--
Confidence            643 3323322  11223222      234456666555543  34555431  11111111 112233333332211  


Q ss_pred             CCCCCCcEEEEEEeCCCe---EE----EEeCCCCeEEEEEe-CC-CC---C---EEEEEEcCCCCEEE-EEeCCCcEEEE
Q 008467          456 TNNPNQQLILASASFDST---VK----LWDVELGKLLYSLN-GH-RE---P---VYSLAFSPTGEYLA-SGSLDKSMHIW  519 (564)
Q Consensus       456 ~~~~~~~~~l~s~s~dg~---i~----iwd~~~~~~~~~~~-~h-~~---~---i~~~~~spdg~~la-sgs~dg~i~iw  519 (564)
                            ..+|+|.-.+.+   ++    --|-..|..+...+ ++ ..   +   -..+.=.++.++|+ .|+..+.+.+|
T Consensus       343 ------nh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~  416 (463)
T KOG1645|consen  343 ------NHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQ  416 (463)
T ss_pred             ------ceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEe
Confidence                  112222111000   00    00111232222111 11 00   0   01122245556665 45556889999


Q ss_pred             eCCCCeEEEEEecCCCEEEEEEcc-CCC-EEEEEEcCCcEEEEEe
Q 008467          520 SLKEGKIVKTYTGNGGIFEVCWNK-EGD-KIAACFANHTVCVLDF  562 (564)
Q Consensus       520 ~~~~~~~~~~~~~~~~i~~~~w~~-~g~-~la~~~~~~~v~v~~~  562 (564)
                      |..++++++++.-+..+.+++-.. .|. +||+- .|..+.||.+
T Consensus       417 D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~  460 (463)
T KOG1645|consen  417 DPHSFEVVQTLALSEPVLDICPNDTNGSSYLALL-TDDRVHIYKN  460 (463)
T ss_pred             ccchhheeeecccCcceeecceeecCCcchhhhe-ecceEEEEec
Confidence            999999999999889999998554 454 55554 5668888864

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.15  E-value=5.4e-05  Score=78.21  Aligned_cols=233  Identities=18%  Similarity=0.231  Sum_probs=137.1

Q ss_pred             EEEECCCCCEEEEEeCC----CeEEEEECCCceeE--eecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEE
Q 008467          280 TLDWNGEGTLLATGSYD----GQARIWSTNGDLKC--TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ  353 (564)
Q Consensus       280 ~l~~s~~g~~l~sg~~d----g~i~vw~~~~~~~~--~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~  353 (564)
                      -..|+|...+|++++..    |.|.||--.|....  +.+.|   +++++|+|..-.|+.|=.-|.+.+|...+.+..  
T Consensus        20 i~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~P~h---atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h--   94 (1416)
T KOG3617|consen   20 ISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTYPVH---ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH--   94 (1416)
T ss_pred             ccccCCCCceeEEEEecCCCCceEEEEecCCCCCccccccee---hhhhccChHHHHHhhccccceeEEEecCCceee--
Confidence            34799999999998764    88999976665322  12222   467999998777777766778888876554321  


Q ss_pred             EeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCee
Q 008467          354 FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY  433 (564)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~  433 (564)
                                                             .....|..+|..+.||++|..++|+..-|.+.+|.......
T Consensus        95 ---------------------------------------tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~  135 (1416)
T KOG3617|consen   95 ---------------------------------------TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGE  135 (1416)
T ss_pred             ---------------------------------------eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccc
Confidence                                                   12235788899999999999999999999999998753222


Q ss_pred             eee--ccccc--c--cEEEEEEccCCCC---------------------------------CCCCCCcEEEEEEeCCCeE
Q 008467          434 VHD--LREHS--K--EIYTIRWSPTGSG---------------------------------TNNPNQQLILASASFDSTV  474 (564)
Q Consensus       434 ~~~--~~~~~--~--~i~~i~~~p~~~~---------------------------------~~~~~~~~~l~s~s~dg~i  474 (564)
                      +..  +-.|.  .  ...+.+.++++..                                 ...|++. .+..++.+|+|
T Consensus       136 ~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~-~F~~~~~~GtV  214 (1416)
T KOG3617|consen  136 IQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGT-EFLFAGKSGTV  214 (1416)
T ss_pred             cccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCc-EEEEEcCCceE
Confidence            211  11111  1  1223333333110                                 0112232 34456678888


Q ss_pred             EEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeE---------------------------
Q 008467          475 KLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL-KEGKI---------------------------  526 (564)
Q Consensus       475 ~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~-~~~~~---------------------------  526 (564)
                      +..|- .|++....+..+.  -.+-|.|-..-|..--.+-++.++-+ .+|+.                           
T Consensus       215 yyvdq-~g~~~~V~k~dS~--vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGv  291 (1416)
T KOG3617|consen  215 YYVDQ-NGRQRTVHKLDSE--VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGV  291 (1416)
T ss_pred             EEEcC-CCcEEEEEEccch--HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCcccccccccc
Confidence            77763 3555544443222  12334443333333333333333222 11210                           


Q ss_pred             E-E----EEecCCCEEEEEEccCCCEEEEEEcCCcEEEE
Q 008467          527 V-K----TYTGNGGIFEVCWNKEGDKIAACFANHTVCVL  560 (564)
Q Consensus       527 ~-~----~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~  560 (564)
                      + +    .+.....++++|+...+..|++|...|.|.+|
T Consensus       292 Lr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w  330 (1416)
T KOG3617|consen  292 LRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIW  330 (1416)
T ss_pred             ccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEe
Confidence            0 0    01113468899999999999999999999988

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.14  E-value=0.0019  Score=65.52  Aligned_cols=49  Identities=24%  Similarity=0.465  Sum_probs=39.0

Q ss_pred             eEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC
Q 008467          298 QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT  347 (564)
Q Consensus       298 ~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~  347 (564)
                      .|+||+..|.+...+.--.+.|.++.|+.+ ..|+....||+++++|+..
T Consensus        62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G  110 (410)
T PF04841_consen   62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFG  110 (410)
T ss_pred             EEEEECCCCCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCC
Confidence            589999998887766544489999999875 4566777899999999863

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.05  E-value=0.0008  Score=70.22  Aligned_cols=188  Identities=12%  Similarity=0.195  Sum_probs=117.8

Q ss_pred             ccCCccceEEEEECCCC-CEEEEEECCC-----cEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC
Q 008467          212 LEGHTSEVCACAWSPAG-SLLASGSGDS-----TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG  285 (564)
Q Consensus       212 l~~h~~~V~~~~~sp~~-~~lasgs~D~-----~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~  285 (564)
                      +..+...+-..-|.-++ .+|++-+.|.     .++||+++......+    |......+......+....++++++.|.
T Consensus        60 fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s----P~c~~~~ri~~~~np~~~~p~s~l~Vs~  135 (933)
T KOG2114|consen   60 FQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS----PQCLYEHRIFTIKNPTNPSPASSLAVSE  135 (933)
T ss_pred             heecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC----cceeeeeeeeccCCCCCCCcceEEEEEc
Confidence            34455553334455554 6888877665     499999975432111    3333222322222223467899999999


Q ss_pred             CCCEEEEEeCCCeEEEEECC-----CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcc-eeEEEeeccc
Q 008467          286 EGTLLATGSYDGQARIWSTN-----GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE-WKQQFEFHSG  359 (564)
Q Consensus       286 ~g~~l~sg~~dg~i~vw~~~-----~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~  359 (564)
                      +-+.+|+|-.+|.|..+.-+     |........-..||+++.+..++..++-+..-..|.+|.+.... .......++.
T Consensus       136 ~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~  215 (933)
T KOG2114|consen  136 DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGI  215 (933)
T ss_pred             cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCc
Confidence            99999999999999998532     22122233456799999999999875555556789999987544 2333555555


Q ss_pred             CeEEEEcCCCce-EEEEeCCCeEEEEEcCCCceeeEec-CCCcceEE
Q 008467          360 PTLDVDWRNNVS-FATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNC  404 (564)
Q Consensus       360 ~~~~~~~~~~~~-~~~~~~d~~i~~~~~~~~~~~~~~~-~h~~~i~~  404 (564)
                      +..+..+.+... |++ ..+..+++|+.+..++...|. ||.....+
T Consensus       216 ~lnCss~~~~t~qfIc-a~~e~l~fY~sd~~~~cfaf~~g~kk~~~~  261 (933)
T KOG2114|consen  216 SLNCSSFSDGTYQFIC-AGSEFLYFYDSDGRGPCFAFEVGEKKEMLV  261 (933)
T ss_pred             cceeeecCCCCccEEE-ecCceEEEEcCCCcceeeeecCCCeEEEEE
Confidence            665555554444 544 455678888888777776666 66554433

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.00  E-value=0.00012  Score=73.44  Aligned_cols=114  Identities=18%  Similarity=0.302  Sum_probs=83.4

Q ss_pred             cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 008467          439 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHI  518 (564)
Q Consensus       439 ~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~i  518 (564)
                      .....+.+.+++|+..         .|+.|+.||+|.+||...+.....  ...-..+.++|+|+|.++++|+..|.+.+
T Consensus       257 pL~s~v~~ca~sp~E~---------kLvlGC~DgSiiLyD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~  325 (545)
T PF11768_consen  257 PLPSQVICCARSPSED---------KLVLGCEDGSIILYDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQC  325 (545)
T ss_pred             ecCCcceEEecCcccc---------eEEEEecCCeEEEEEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEE
Confidence            3556788888888754         688899999999999876643322  23455789999999999999999999999


Q ss_pred             EeCCCCeEEEE-----------------EecCCCEEEEEEccCC-------------CEEEEEEcCCcEEEEEee
Q 008467          519 WSLKEGKIVKT-----------------YTGNGGIFEVCWNKEG-------------DKIAACFANHTVCVLDFR  563 (564)
Q Consensus       519 w~~~~~~~~~~-----------------~~~~~~i~~~~w~~~g-------------~~la~~~~~~~v~v~~~~  563 (564)
                      ||+.-.-+...                 +.....+..+.|.+..             +.|+..+..|-+.|+-|.
T Consensus       326 FD~ALspi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~~~~~~~~~~~~~~~~~L~l~f~~GPl~vl~~~  400 (545)
T PF11768_consen  326 FDMALSPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPAPQLSSQGEFYADTYDLLLLVFERGPLAVLRFK  400 (545)
T ss_pred             EEeecCccceeeccccCCCccEEeeehhccCcchhheeEeccCCCccccCCCcCCccceEEEEEcCCCeEEEEEe
Confidence            99864322111                 1122345678998432             477888888988887664

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.96  E-value=0.021  Score=57.05  Aligned_cols=88  Identities=13%  Similarity=0.203  Sum_probs=58.9

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccC--CCC---------CC-CCCCcEEEEE
Q 008467          400 GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT--GSG---------TN-NPNQQLILAS  467 (564)
Q Consensus       400 ~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~--~~~---------~~-~~~~~~~l~s  467 (564)
                      ..+.+++.+|++++.|+...=|.|.++|+.++..++-+++....  .+.|-..  ...         .. .....++++-
T Consensus       308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA--qc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy  385 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA--QCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY  385 (415)
T ss_pred             ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc--eEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence            45788999999999888877899999999988877776654332  1222211  100         00 0112234555


Q ss_pred             EeCCCeEEEEeCCCCeEEEEEe
Q 008467          468 ASFDSTVKLWDVELGKLLYSLN  489 (564)
Q Consensus       468 ~s~dg~i~iwd~~~~~~~~~~~  489 (564)
                      +-.-|.|.||.++.|..+..+.
T Consensus       386 aprRg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  386 APRRGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             eccCCeEEEEecCCCCEEEEEE
Confidence            7778999999999988877664

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.96  E-value=0.0027  Score=64.50  Aligned_cols=218  Identities=15%  Similarity=0.206  Sum_probs=117.1

Q ss_pred             CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeE
Q 008467          315 HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKT  394 (564)
Q Consensus       315 h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~  394 (564)
                      ..-....+.++|+|++++. +.||...|+......  ..   ..+...++.|.....|++-.....|.++.--++...+.
T Consensus        31 ~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r--~k---~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~  104 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWR--NK---AFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKS  104 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTE--EE---EEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT--
T ss_pred             CCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCc--cc---ccCceeEEEEecCccEEEEECCCeEEEEEcCccccceE
Confidence            3344678999999999888 567888888743222  11   12345677888888899888888888864433333222


Q ss_pred             ecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeE
Q 008467          395 FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTV  474 (564)
Q Consensus       395 ~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i  474 (564)
                      +.-. ..+..+-.   |.+|+..+.+ .|.+||+.+++.+..+...  .|..+.|++++.         +++-.+ +.++
T Consensus       105 i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~---------~val~t-~~~i  167 (443)
T PF04053_consen  105 IKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGE---------LVALVT-KDSI  167 (443)
T ss_dssp             ---S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSS---------EEEEE--S-SE
T ss_pred             EcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCC---------EEEEEe-CCeE
Confidence            2211 12333322   8888777665 8999999999999887643  389999999875         444444 4578


Q ss_pred             EEEeCCCC-----------eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--EEEEEecCCCEEEEEE
Q 008467          475 KLWDVELG-----------KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK--IVKTYTGNGGIFEVCW  541 (564)
Q Consensus       475 ~iwd~~~~-----------~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~--~~~~~~~~~~i~~~~w  541 (564)
                      .|++....           .....+..-...|.+.+|..| -++.|...  .|+.+  -.|.  .++.+  ...++=+..
T Consensus       168 ~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~~--~lkYl--~~Ge~~~i~~l--d~~~yllgy  240 (443)
T PF04053_consen  168 YILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTSN--HLKYL--VNGETGIIAHL--DKPLYLLGY  240 (443)
T ss_dssp             EEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-TT--EEEEE--ETTEEEEEEE---SS--EEEEE
T ss_pred             EEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcCC--eEEEE--EcCCcceEEEc--CCceEEEEE
Confidence            88775433           012222221456888888766 44444332  67663  3343  23333  345677777


Q ss_pred             ccCCCEEEEEEcCCcEEEEEe
Q 008467          542 NKEGDKIAACFANHTVCVLDF  562 (564)
Q Consensus       542 ~~~g~~la~~~~~~~v~v~~~  562 (564)
                      .++.++|.....++.|..+.+
T Consensus       241 ~~~~~~ly~~Dr~~~v~~~~l  261 (443)
T PF04053_consen  241 LPKENRLYLIDRDGNVISYEL  261 (443)
T ss_dssp             ETTTTEEEEE-TT--EEEEE-
T ss_pred             EccCCEEEEEECCCCEEEEEE
Confidence            787788888878877776654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.95  E-value=9.1e-05  Score=74.28  Aligned_cols=73  Identities=16%  Similarity=0.196  Sum_probs=61.7

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          490 GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       490 ~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      .....|.+.+++|+...|+.|..||.|.+||...+....+ ...-.+..++|+|+|..+++|+..|.+.+||.-
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence            3667899999999999999999999999999987643322 333446899999999999999999999999974

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.95  E-value=0.00039  Score=70.45  Aligned_cols=146  Identities=16%  Similarity=0.270  Sum_probs=84.4

Q ss_pred             ecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeE
Q 008467          395 FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTV  474 (564)
Q Consensus       395 ~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i  474 (564)
                      +....-....+.++|+|++++.| .||...|+.....+...     .+....+.|.+.+          -+|+-...++|
T Consensus        28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n----------~yAv~~~~~~I   91 (443)
T PF04053_consen   28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSSRN----------RYAVLESSSTI   91 (443)
T ss_dssp             EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-TSS----------EEEEE-TTS-E
T ss_pred             CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEecCc----------cEEEEECCCeE
Confidence            33344457789999999998884 56777777744333221     2334667888754          36666678889


Q ss_pred             EEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcC
Q 008467          475 KLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN  554 (564)
Q Consensus       475 ~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~  554 (564)
                      +|+.--..+....+.. ...+..|-.   |..|+..+.+ .|.+||+.+++++..+.... |..+-||++|+++|..+.+
T Consensus        92 ~I~kn~~~~~~k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~  165 (443)
T PF04053_consen   92 KIYKNFKNEVVKSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKD  165 (443)
T ss_dssp             EEEETTEE-TT------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S-
T ss_pred             EEEEcCccccceEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCC
Confidence            9973222222122221 113444433   8888877766 79999999999999987553 8899999999999999766


Q ss_pred             CcEEEEEee
Q 008467          555 HTVCVLDFR  563 (564)
Q Consensus       555 ~~v~v~~~~  563 (564)
                       .+.|++..
T Consensus       166 -~i~il~~~  173 (443)
T PF04053_consen  166 -SIYILKYN  173 (443)
T ss_dssp             -SEEEEEE-
T ss_pred             -eEEEEEec
Confidence             67787653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>smart00667 LisH Lissencephaly type-1-like homology motif

Probab=97.93  E-value=1.9e-06  Score=53.14  Aligned_cols=31  Identities=35%  Similarity=0.546  Sum_probs=28.7

Q ss_pred             ccchhhhhHHHHHhcCCceeeeccccccCCc
Q 008467            6 SEELNYLVFRYLQESGLLHSAFVLGYEAGIN   36 (564)
Q Consensus         6 s~evn~Li~ryl~E~g~~~sa~~~~~E~~~~   36 (564)
                      -.++|.||++||++.||..||.+|..|+++.
T Consensus         3 ~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~   33 (34)
T smart00667        3 RSELNRLILEYLLRNGYEETAETLQKESGLS   33 (34)
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence            3579999999999999999999999999875

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.93  E-value=0.041  Score=57.78  Aligned_cols=75  Identities=19%  Similarity=0.472  Sum_probs=51.9

Q ss_pred             CeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEE--EEEccCCCE
Q 008467          472 STVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFE--VCWNKEGDK  547 (564)
Q Consensus       472 g~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~--~~w~~~g~~  547 (564)
                      |.|.-+|+.+|+.+....... +...-...-.|..++.++.||.++.+|.++|+.+..++..+.+..  +.+..+|+.
T Consensus       441 g~l~AiD~~tGk~~W~~~~~~-p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~q  517 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKEDF-PLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQ  517 (527)
T ss_pred             eeEEEEeCCCCceeeEecCCC-CCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCEE
Confidence            568889999999888765322 211111122455777788899999999999999988876655443  556667763

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.93  E-value=0.0013  Score=67.80  Aligned_cols=212  Identities=15%  Similarity=0.110  Sum_probs=117.8

Q ss_pred             eCCCCCEEEE-eeCCCcEEEEECCCcceeEEEeecccC-eEEEEcCCCceEEEEe---CCCeEEEEEcCCCceeeEecCC
Q 008467          324 WNKKGDYLLT-GSCDKTAIVWDVKTEEWKQQFEFHSGP-TLDVDWRNNVSFATSS---TDNMIYVCKIGENRPIKTFAGH  398 (564)
Q Consensus       324 ~~~~~~~l~s-~s~D~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~d~~i~~~~~~~~~~~~~~~~h  398 (564)
                      +.|+|+.+.. .-..+.+.+.|..+.+...++.....+ ..++.......|+++.   ....+...+..+..-+..|.-.
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~  279 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA  279 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence            3455654432 223355667777776665555443322 2233333333444431   1222322222211111111100


Q ss_pred             CcceEEEEECCCCCEEEEEeCCCcEEEEeCCC-----CeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCe
Q 008467          399 QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ-----DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDST  473 (564)
Q Consensus       399 ~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~-----~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~  473 (564)
                        .+  .++.++|++...  .+++|.+.|..+     ...+..+ .-......+.++|+|.        .+++++..+.+
T Consensus       280 --~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGk--------ylyVanklS~t  344 (635)
T PRK02888        280 --RI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGK--------YFIANGKLSPT  344 (635)
T ss_pred             --HH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEE-ECCCCccceEECCCCC--------EEEEeCCCCCc
Confidence              00  123457776554  367899999887     3333333 2334456778888775        57788888999


Q ss_pred             EEEEeCCCCeE------------EEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC----------CeEEEEEe
Q 008467          474 VKLWDVELGKL------------LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE----------GKIVKTYT  531 (564)
Q Consensus       474 i~iwd~~~~~~------------~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~----------~~~~~~~~  531 (564)
                      |.|.|+.+.+.            +....--.+ -...+|.++|..+.|--.|..|..|++.+          ..++....
T Consensus       345 VSVIDv~k~k~~~~~~~~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~d  423 (635)
T PRK02888        345 VTVIDVRKLDDLFDGKIKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLD  423 (635)
T ss_pred             EEEEEChhhhhhhhccCCccceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceeccc
Confidence            99999987542            333332223 35678999999888999999999999876          23444333


Q ss_pred             cCCCEEEEE------EccCCCEEEEE
Q 008467          532 GNGGIFEVC------WNKEGDKIAAC  551 (564)
Q Consensus       532 ~~~~i~~~~------w~~~g~~la~~  551 (564)
                      -+-.+-.+.      -.|||++|++.
T Consensus       424 V~y~pgh~~~~~g~t~~~dgk~l~~~  449 (635)
T PRK02888        424 VHYQPGHNHASMGETKEADGKWLVSL  449 (635)
T ss_pred             CCCccceeeecCCCcCCCCCCEEEEc
Confidence            222222222      37889988876

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.91  E-value=0.0079  Score=54.31  Aligned_cols=205  Identities=15%  Similarity=0.127  Sum_probs=116.8

Q ss_pred             CCEEEEeeCCCcEEEEECCCcceeEEEee----cccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceE
Q 008467          328 GDYLLTGSCDKTAIVWDVKTEEWKQQFEF----HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVN  403 (564)
Q Consensus       328 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~  403 (564)
                      ..+++.||..+.+..-|..+|.++-.-..    ...++.     -+..++.+...+.+|+.+..++..+..|..-..--.
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-----vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~   97 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-----VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKV   97 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-----ECCEEEEEEccCcEEEEEecchhheeeeeehhhhcc
Confidence            45677888888888888888775432111    111111     123367778888899999888876666654333223


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-
Q 008467          404 CVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-  482 (564)
Q Consensus       404 ~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-  482 (564)
                      .....+++.++..|+.|++...-|.++..++...+-..+...+-+..|.       +..  |..+...|.|.--+...+ 
T Consensus        98 ~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g-------~~s--ly~a~t~G~vlavt~~~~~  168 (354)
T KOG4649|consen   98 RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPG-------DGS--LYAAITAGAVLAVTKNPYS  168 (354)
T ss_pred             ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCC-------Cce--EEEEeccceEEEEccCCCC
Confidence            4566889999999999999999999998888765432222112122221       112  233334454433333322 


Q ss_pred             -eEEEEEeCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEE-EEEEc-cCCCEEEEE
Q 008467          483 -KLLYSLNGHREPVYSLAFSP--TGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIF-EVCWN-KEGDKIAAC  551 (564)
Q Consensus       483 -~~~~~~~~h~~~i~~~~~sp--dg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~-~~~w~-~~g~~la~~  551 (564)
                       ..++... ...||.+   +|  -+..+..+.-||.+.-++ ..|+.+..+...++|+ +.+-+ |.-+.|..+
T Consensus       169 ~~~~w~~~-~~~PiF~---splcv~~sv~i~~VdG~l~~f~-~sG~qvwr~~t~GpIf~~Pc~s~Ps~q~i~~~  237 (354)
T KOG4649|consen  169 STEFWAAT-RFGPIFA---SPLCVGSSVIITTVDGVLTSFD-ESGRQVWRPATKGPIFMEPCESRPSCQQISLE  237 (354)
T ss_pred             cceehhhh-cCCcccc---CceeccceEEEEEeccEEEEEc-CCCcEEEeecCCCceecccccCCCcceEEEEe
Confidence             1111111 1234432   11  145566677788888887 6677777776666664 23333 333444444

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.90  E-value=0.026  Score=57.28  Aligned_cols=222  Identities=16%  Similarity=0.286  Sum_probs=109.7

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEee-------cCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCc
Q 008467          276 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTL-------SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE  348 (564)
Q Consensus       276 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~-------~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~  348 (564)
                      ..|.++.|+.+.. |++-..||.+++++..|.....+       .-....+....+..+|-.++++  ++.+.+..-...
T Consensus        81 ~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~--~~~~~~v~n~~~  157 (410)
T PF04841_consen   81 GRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTG--NNRFYVVNNIDE  157 (410)
T ss_pred             CCEEEEEECCCCe-EEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCEEEECC--CCeEEEEeCccc
Confidence            6799999998654 55667899999999877661111       1112223333444466444543  344444322221


Q ss_pred             c-eeEEEeecccCeEEEEcC-----------CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEE
Q 008467          349 E-WKQQFEFHSGPTLDVDWR-----------NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLAS  416 (564)
Q Consensus       349 ~-~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las  416 (564)
                      . ..+.+...........|.           .....+....+..+++.+...-.+   + ...+++..++.||+|++||.
T Consensus       158 ~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i-~~~~~i~~iavSpng~~iAl  233 (410)
T PF04841_consen  158 PVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I-DSDGPIIKIAVSPNGKFIAL  233 (410)
T ss_pred             cchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c-cCCCCeEEEEECCCCCEEEE
Confidence            1 111111000000000111           111122222333333222211111   1 12357999999999999999


Q ss_pred             EeCCCcEEEEeCCCCeeeeecccc-cccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCE
Q 008467          417 CSDDVTAKIWNMKQDKYVHDLREH-SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPV  495 (564)
Q Consensus       417 ~s~dg~i~iwd~~~~~~~~~~~~~-~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i  495 (564)
                      -..+|.+.+.+..-.+...++... ......+.|.                  +.|..+-.|.    ..+.-+.....  
T Consensus       234 ~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WC------------------G~dav~l~~~----~~l~lvg~~~~--  289 (410)
T PF04841_consen  234 FTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWC------------------GNDAVVLSWE----DELLLVGPDGD--  289 (410)
T ss_pred             EECCCCEEEEECcccceeEEeecCcCCCCcEEEEE------------------CCCcEEEEeC----CEEEEECCCCC--
Confidence            999999998876555444443322 2233445553                  3344444441    11211212222  


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q 008467          496 YSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY  530 (564)
Q Consensus       496 ~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~  530 (564)
                       .+.|.-++..++..-.|| |+|..-..-+.+...
T Consensus       290 -~~~~~~~~~~~l~~E~DG-~riit~~~~~~l~~V  322 (410)
T PF04841_consen  290 -SISFWYDGPVILVSEIDG-VRIITSTSHEFLQRV  322 (410)
T ss_pred             -ceEEeccCceEEeccCCc-eEEEeCCceEEEEEC
Confidence             234555555555566677 888877666665543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.87  E-value=5.5e-06  Score=82.87  Aligned_cols=194  Identities=21%  Similarity=0.334  Sum_probs=122.6

Q ss_pred             CCeEEEEECCCC--CEEEEEeCCCeEEEEECCCc---eeEeecCCCCCEEEEEeCCCCCEEEEeeC-----CCcEEEEEC
Q 008467          276 KDVTTLDWNGEG--TLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTGSC-----DKTAIVWDV  345 (564)
Q Consensus       276 ~~V~~l~~s~~g--~~l~sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-----D~~v~iwd~  345 (564)
                      ..+.|++|+-+.  ..++.|..+|.|-+-.....   -....++|..+.++++|++-....++++.     |..+.|||+
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi  136 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI  136 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence            457788877644  57889999999998875422   23456788899999999996544444444     457999999


Q ss_pred             CCc--ceeEEEeecc---cCeEEEEcCCCceEE-EEeCCCeEEEEEcCCCce-eeEecCCCcceEEEEECC-CCCEEEEE
Q 008467          346 KTE--EWKQQFEFHS---GPTLDVDWRNNVSFA-TSSTDNMIYVCKIGENRP-IKTFAGHQGEVNCVKWDP-TGSLLASC  417 (564)
Q Consensus       346 ~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~d~~i~~~~~~~~~~-~~~~~~h~~~i~~v~~~~-~~~~las~  417 (564)
                      .++  .......+..   .....++|..+..++ +|.....+.+++++.... ...+  .+..+..+..+| .+.++++-
T Consensus       137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~  214 (783)
T KOG1008|consen  137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSN  214 (783)
T ss_pred             ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceecc
Confidence            876  2222222222   233467787655554 455556777777763221 1111  123455677788 67777655


Q ss_pred             eCCCcEEEEeC-C-CCeeeeeccc----ccccEEEEEEccCCCCCCCCCCcEEEEEEeCC-CeEEEEeCC
Q 008467          418 SDDVTAKIWNM-K-QDKYVHDLRE----HSKEIYTIRWSPTGSGTNNPNQQLILASASFD-STVKLWDVE  480 (564)
Q Consensus       418 s~dg~i~iwd~-~-~~~~~~~~~~----~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d-g~i~iwd~~  480 (564)
                      + ||.|-+||. + -..++..+..    ....+..++|.|...+        ++++.+.| ++|+++|+.
T Consensus       215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtg--------lla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTG--------LLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcc--------hhhhhccCcceEEEeccc
Confidence            5 999999993 2 2233322221    2234899999997643        56676655 789999875

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.84  E-value=0.0068  Score=60.51  Aligned_cols=273  Identities=17%  Similarity=0.240  Sum_probs=131.5

Q ss_pred             ccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeecc-ccccC-CCCeEEEEECCCCCEEEEE
Q 008467          216 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKG-RTNEK-SKDVTTLDWNGEGTLLATG  293 (564)
Q Consensus       216 ~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~V~~l~~s~~g~~l~sg  293 (564)
                      ...+....|||+|+.+|... ++-+.++++.++....-...+.....  ..... ...+. -..-..+-|||||++||..
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~--nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~  118 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIY--NGVPDWVYEEEVFDRRSAVWWSPDSKYLAFL  118 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEE--ESB--HHHHHHTSSSSBSEEE-TTSSEEEEE
T ss_pred             ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEE--cCccceeccccccccccceEECCCCCEEEEE
Confidence            56678899999999998875 57899988766532111111100000  00000 00000 1223568999999999987


Q ss_pred             eCC-CeEEEEECCCceeEeecCCC---CCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEE-Ee----ecccCeEEE
Q 008467          294 SYD-GQARIWSTNGDLKCTLSKHK---GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ-FE----FHSGPTLDV  364 (564)
Q Consensus       294 ~~d-g~i~vw~~~~~~~~~~~~h~---~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~-~~----~~~~~~~~~  364 (564)
                      ..| ..|+.+...     ......   -.+..+++-.-|.-...    -.+.|+|+.+++.... ..    ....-+..+
T Consensus       119 ~~d~~~v~~~~~~-----~~~~~~~~yp~~~~~~YPk~G~~np~----v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v  189 (353)
T PF00930_consen  119 RFDEREVPEYPLP-----DYSPPDSQYPEVESIRYPKAGDPNPR----VSLFVVDLASGKTTELDPPNSLNPQDYYLTRV  189 (353)
T ss_dssp             EEE-TTS-EEEEE-----EESSSTESS-EEEEEE--BTTS---E----EEEEEEESSSTCCCEE---HHHHTSSEEEEEE
T ss_pred             EECCcCCceEEee-----ccCCccccCCcccccccCCCCCcCCc----eEEEEEECCCCcEEEeeeccccCCCccCcccc
Confidence            655 333333210     011111   12344444322222111    1456678877765321 11    112235677


Q ss_pred             EcCCCce-EEEEe--CC---CeEEEEEcCCCceeeEecC-CCcc---eEEEEEC-CCCC-EEEEEeCCCcEEEE--eCCC
Q 008467          365 DWRNNVS-FATSS--TD---NMIYVCKIGENRPIKTFAG-HQGE---VNCVKWD-PTGS-LLASCSDDVTAKIW--NMKQ  430 (564)
Q Consensus       365 ~~~~~~~-~~~~~--~d---~~i~~~~~~~~~~~~~~~~-h~~~---i~~v~~~-~~~~-~las~s~dg~i~iw--d~~~  430 (564)
                      .|.++.. ++..-  .+   ..+.+|+..++.....+.. ..+.   .....|. +++. +|.....||.-+||  +...
T Consensus       190 ~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~  269 (353)
T PF00930_consen  190 GWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDG  269 (353)
T ss_dssp             EEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTS
T ss_pred             eecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccc
Confidence            8866554 44332  22   2356677765543222221 1222   2245554 5555 44555577866555  4444


Q ss_pred             CeeeeecccccccEEE-EEEccCCCCCCCCCCcEEEEEEeCC----CeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCC
Q 008467          431 DKYVHDLREHSKEIYT-IRWSPTGSGTNNPNQQLILASASFD----STVKLWDVELGKLLYSLNGHREPVYSLAFSPTGE  505 (564)
Q Consensus       431 ~~~~~~~~~~~~~i~~-i~~~p~~~~~~~~~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~  505 (564)
                      +. ...+....-.|.. +.|.+.+.        .+..++..+    ..|..-++..+..+..++.....-..++|||+|+
T Consensus       270 ~~-~~~lT~G~~~V~~i~~~d~~~~--------~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~  340 (353)
T PF00930_consen  270 GK-PRQLTSGDWEVTSILGWDEDNN--------RIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGK  340 (353)
T ss_dssp             SE-EEESS-SSS-EEEEEEEECTSS--------EEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSS
T ss_pred             cc-eeccccCceeecccceEcCCCC--------EEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCC
Confidence            44 3345544555644 56666543        355556543    2555556662344556654444337999999999


Q ss_pred             EEEE
Q 008467          506 YLAS  509 (564)
Q Consensus       506 ~las  509 (564)
                      +++.
T Consensus       341 y~v~  344 (353)
T PF00930_consen  341 YYVD  344 (353)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8874

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.80  E-value=0.029  Score=56.23  Aligned_cols=290  Identities=14%  Similarity=0.132  Sum_probs=133.7

Q ss_pred             ceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCC-CCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC
Q 008467          218 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNG-GAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD  296 (564)
Q Consensus       218 ~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d  296 (564)
                      .|+.+.|.++..-||.|-..|.+.||.+...+... .......   ......-........++.+.=-.+.         
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~di~~r~~~---------   70 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDL---DYNFRRFSLNNSPGKLTDISDRAPP---------   70 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE---------------------S--GGGSS-SEEE-GGG--T---------
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCccc---CcccccccccCCCcceEEehhhCCc---------
Confidence            47899999998889999999999999876433221 0000000   0000000000001112211100000         


Q ss_pred             CeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEE
Q 008467          297 GQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATS  375 (564)
Q Consensus       297 g~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (564)
                       .+    .+| .....+....++|++++.+.-| +++.|..+|++.|.|++....+..-....            .+   
T Consensus        71 -~~----~~gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~------------~~---  129 (395)
T PF08596_consen   71 -SL----KEGFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRE------------SF---  129 (395)
T ss_dssp             -T-----SEEEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG-----------------
T ss_pred             -cc----ccccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccc------------cc---
Confidence             00    001 1123345568999999998555 88999999999999998766554321111            00   


Q ss_pred             eCCCeEEEEEcCCCceeeEecCCCcceEEEEEC-----CCC---CEEEEEeCCCcEEEEeCCC---Ceee----eecccc
Q 008467          376 STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWD-----PTG---SLLASCSDDVTAKIWNMKQ---DKYV----HDLREH  440 (564)
Q Consensus       376 ~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~-----~~~---~~las~s~dg~i~iwd~~~---~~~~----~~~~~~  440 (564)
                                        .-......|+++.|.     .|+   -+++.|++.|.+.+|.+.-   +...    .....+
T Consensus       130 ------------------~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~  191 (395)
T PF08596_consen  130 ------------------LSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNH  191 (395)
T ss_dssp             ------------------T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--S
T ss_pred             ------------------cccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccC
Confidence                              000011223334332     222   3577888888888887531   2121    111245


Q ss_pred             cccEEEEEEc-cC-CCCCC-----------CCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEE-----cC
Q 008467          441 SKEIYTIRWS-PT-GSGTN-----------NPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAF-----SP  502 (564)
Q Consensus       441 ~~~i~~i~~~-p~-~~~~~-----------~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~-----sp  502 (564)
                      .++|..|..- .+ |....           ...-..+++.+ .+..+|++...+.+..+...........+.+     ..
T Consensus       192 ~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv-Se~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~  270 (395)
T PF08596_consen  192 DSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV-SESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRN  270 (395)
T ss_dssp             S----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EE
T ss_pred             CCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE-cccceEEEeCCCCcccceeeccccccceEEEEeecccC
Confidence            5666665422 21 11000           00011233333 4678999999888776655422222334445     23


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCC-----EEEEEEccCCCEEEEEEcCCcEEEE
Q 008467          503 TGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG-----IFEVCWNKEGDKIAACFANHTVCVL  560 (564)
Q Consensus       503 dg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~-----i~~~~w~~~g~~la~~~~~~~v~v~  560 (564)
                      .+..|++-..+|.|++|.+..-+.+....-...     +...+++++|+.+...+.. .+.++
T Consensus       271 ~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gps-E~~l~  332 (395)
T PF08596_consen  271 GGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPS-EIQLF  332 (395)
T ss_dssp             EEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSS-EEEEE
T ss_pred             CceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeCcc-cEEEE
Confidence            577888899999999999998887776654321     2356778899877766433 44443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.80  E-value=0.0004  Score=70.85  Aligned_cols=120  Identities=16%  Similarity=0.234  Sum_probs=87.6

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeec--CCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEE
Q 008467          276 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLS--KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ  353 (564)
Q Consensus       276 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~--~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~  353 (564)
                      ..|.--+++..+++++.|+.-|.+.+|+..+.....+.  +-.+.+..+..|++..+++.|+..|.|.++-++.+.... 
T Consensus        34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~-  112 (726)
T KOG3621|consen   34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD-  112 (726)
T ss_pred             ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc-
Confidence            34555567778899999999999999998776544333  355666777788888888899999999988765522110 


Q ss_pred             EeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 008467          354 FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ  430 (564)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~  430 (564)
                                      ..+++.        ++          ..|...|+|++|++++..|.+|...|+|.+-.+..
T Consensus       113 ----------------~~~~t~--------~d----------~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  113 ----------------LDYVTP--------CD----------KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ----------------ceeecc--------cc----------ccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence                            000000        00          12778899999999999999999999998887766

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.80  E-value=0.00066  Score=68.62  Aligned_cols=145  Identities=22%  Similarity=0.245  Sum_probs=90.1

Q ss_pred             CcceEEEEECCCCCEEEEEeC---C-CcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeE
Q 008467          399 QGEVNCVKWDPTGSLLASCSD---D-VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTV  474 (564)
Q Consensus       399 ~~~i~~v~~~~~~~~las~s~---d-g~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i  474 (564)
                      ...+..-+|+|+++.++-.+.   . ..+.++++.+++....+. ..+.-..-+|+|+|.        .++.+...||..
T Consensus       192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~--------~l~f~~~rdg~~  262 (425)
T COG0823         192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS--------KLAFSSSRDGSP  262 (425)
T ss_pred             CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC--------EEEEEECCCCCc
Confidence            345667789999987665432   2 358888988776543322 222234457777775        477777788865


Q ss_pred             EE--EeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC-CC--cEEEEeCCCCeEEEEEecC-CCEEEEEEccCCCEE
Q 008467          475 KL--WDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL-DK--SMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKI  548 (564)
Q Consensus       475 ~i--wd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~-dg--~i~iw~~~~~~~~~~~~~~-~~i~~~~w~~~g~~l  548 (564)
                      .|  .|+..+. +..+..-.+.-..=.|+|||++|+-.+. .|  .|.+.+...+.. ..++.. +.-....|+|||++|
T Consensus       263 ~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i  340 (425)
T COG0823         263 DIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKI  340 (425)
T ss_pred             cEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEE
Confidence            54  5666555 3345433333335689999999986654 44  466667666554 222222 222277899999999


Q ss_pred             EEEEcC
Q 008467          549 AACFAN  554 (564)
Q Consensus       549 a~~~~~  554 (564)
                      +.....
T Consensus       341 ~~~~~~  346 (425)
T COG0823         341 VFESSS  346 (425)
T ss_pred             EEEecc
Confidence            988753

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.79  E-value=0.013  Score=56.24  Aligned_cols=252  Identities=13%  Similarity=0.169  Sum_probs=137.1

Q ss_pred             EEEECCCCCEEEEEeC----------CCeEEEEECCCce-eE--eecC-CCC----CEEEEEeCCCCCEEEEe--eCCCc
Q 008467          280 TLDWNGEGTLLATGSY----------DGQARIWSTNGDL-KC--TLSK-HKG----PIFSLKWNKKGDYLLTG--SCDKT  339 (564)
Q Consensus       280 ~l~~s~~g~~l~sg~~----------dg~i~vw~~~~~~-~~--~~~~-h~~----~V~~l~~~~~~~~l~s~--s~D~~  339 (564)
                      .+..||+|+.+.+++.          .-.|.+||...-. ..  .+.. |..    ....+.++.+|++++..  +--.+
T Consensus        40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S  119 (342)
T PF06433_consen   40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS  119 (342)
T ss_dssp             EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred             ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence            3567899988876532          2368899976421 11  2221 111    11235678899987765  44568


Q ss_pred             EEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCC-CceeeE----ecCCCc-ceEEEEECCCCCE
Q 008467          340 AIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE-NRPIKT----FAGHQG-EVNCVKWDPTGSL  413 (564)
Q Consensus       340 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~----~~~h~~-~i~~v~~~~~~~~  413 (564)
                      |.|-|+..++++..+....  ...+-...+..|.+-+.||.+....++. +++...    |..-.. .+..-++...+..
T Consensus       120 VtVVDl~~~kvv~ei~~PG--C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~  197 (342)
T PF06433_consen  120 VTVVDLAAKKVVGEIDTPG--CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGR  197 (342)
T ss_dssp             EEEEETTTTEEEEEEEGTS--EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTE
T ss_pred             EEEEECCCCceeeeecCCC--EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCe
Confidence            9999999998887654322  2222233445788888899988888873 443321    111111 1223344444444


Q ss_pred             EEEEeCCCcEEEEeCCCCeeee--ecccccccEEEEEEccCCCCC---CCCCCcEEE-EEEeCCC-------eEEEEeCC
Q 008467          414 LASCSDDVTAKIWNMKQDKYVH--DLREHSKEIYTIRWSPTGSGT---NNPNQQLIL-ASASFDS-------TVKLWDVE  480 (564)
Q Consensus       414 las~s~dg~i~iwd~~~~~~~~--~~~~~~~~i~~i~~~p~~~~~---~~~~~~~~l-~s~s~dg-------~i~iwd~~  480 (564)
                      ++--+.+|.|+--|+.......  .+..-...-..-.|.|.|-..   +.+.+.+++ .--+.++       .|-++|+.
T Consensus       198 ~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~  277 (342)
T PF06433_consen  198 LYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLK  277 (342)
T ss_dssp             EEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETT
T ss_pred             EEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECC
Confidence            4456777877777765543211  110000000001355554321   112222222 2222222       37778999


Q ss_pred             CCeEEEEEeCCCCCEEEEEEcCCCC-EEEEE-eCCCcEEEEeCCCCeEEEEEecCC
Q 008467          481 LGKLLYSLNGHREPVYSLAFSPTGE-YLASG-SLDKSMHIWSLKEGKIVKTYTGNG  534 (564)
Q Consensus       481 ~~~~~~~~~~h~~~i~~~~~spdg~-~lasg-s~dg~i~iw~~~~~~~~~~~~~~~  534 (564)
                      +++.+.++.. ..++.+|+.+.|.+ +|.+. ..++.|.+||..+|+++++...-+
T Consensus       278 t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG  332 (342)
T PF06433_consen  278 THKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLG  332 (342)
T ss_dssp             TTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---S
T ss_pred             CCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccC
Confidence            9999988863 34688999998875 66554 458999999999999999876543

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.76  E-value=0.05  Score=53.28  Aligned_cols=271  Identities=15%  Similarity=0.203  Sum_probs=123.1

Q ss_pred             EECCCCCEEEEE-eCCCeEE--EEECCCceeEeecCCCC-CEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeec
Q 008467          282 DWNGEGTLLATG-SYDGQAR--IWSTNGDLKCTLSKHKG-PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH  357 (564)
Q Consensus       282 ~~s~~g~~l~sg-~~dg~i~--vw~~~~~~~~~~~~h~~-~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~  357 (564)
                      +|.+||+.|+.+ ..||.-.  +.|+.......+....+ ...+..++|+++.++-....++|+--|+.+.+....+...
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p  121 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP  121 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence            588899765554 4566544  44666666666655432 2335667888888766656678999999998766655554


Q ss_pred             ccCeEEEEcC--CCceEEEE-----------------------eCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCC
Q 008467          358 SGPTLDVDWR--NNVSFATS-----------------------STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS  412 (564)
Q Consensus       358 ~~~~~~~~~~--~~~~~~~~-----------------------~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~  412 (564)
                      ..-.-...|.  .+...+.+                       -....|+..++.++..-..+. -...+.-+.|+|...
T Consensus       122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp  200 (386)
T PF14583_consen  122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDP  200 (386)
T ss_dssp             TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEE
T ss_pred             cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCCC
Confidence            4322223331  11111111                       011234444555444332222 234566788888654


Q ss_pred             -EEEEEeC---CC-cEEEEeCCCCe-eeeeccccc--ccEEEEEEccCCCCCCCCCCcEEEEEE---eCCCeEEEEeCCC
Q 008467          413 -LLASCSD---DV-TAKIWNMKQDK-YVHDLREHS--KEIYTIRWSPTGSGTNNPNQQLILASA---SFDSTVKLWDVEL  481 (564)
Q Consensus       413 -~las~s~---dg-~i~iwd~~~~~-~~~~~~~~~--~~i~~i~~~p~~~~~~~~~~~~~l~s~---s~dg~i~iwd~~~  481 (564)
                       +|+-|.+   +. .-|||-+++.. ....+..+.  ..+.-=-|.|+|..       +...+.   +.+..|.-+|+.+
T Consensus       201 ~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~-------i~y~~~~~~~~~~~i~~~d~~t  273 (386)
T PF14583_consen  201 TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGST-------IWYDSYTPGGQDFWIAGYDPDT  273 (386)
T ss_dssp             EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS--------EEEEEEETTT--EEEEEE-TTT
T ss_pred             CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCE-------EEEEeecCCCCceEEEeeCCCC
Confidence             4555544   32 24778665322 122233222  22333468888752       111121   2234566677877


Q ss_pred             CeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCC----------------cEEEEeCCCCeEEEEEec---------CCC-
Q 008467          482 GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK----------------SMHIWSLKEGKIVKTYTG---------NGG-  535 (564)
Q Consensus       482 ~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg----------------~i~iw~~~~~~~~~~~~~---------~~~-  535 (564)
                      ++......  ..+....--++||+++|-=+.|.                .|++++++.+........         +.. 
T Consensus       274 ~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~  351 (386)
T PF14583_consen  274 GERRRLME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQV  351 (386)
T ss_dssp             --EEEEEE--E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSST
T ss_pred             CCceEEEe--CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCcc
Confidence            75432221  12344566689999987544432                567788887765332221         111 


Q ss_pred             -EEEEEEccCCCEEEEEE-cCCcEEEEEe
Q 008467          536 -IFEVCWNKEGDKIAACF-ANHTVCVLDF  562 (564)
Q Consensus       536 -i~~~~w~~~g~~la~~~-~~~~v~v~~~  562 (564)
                       =..++|+|||+++...+ ..|..+||=+
T Consensus       352 ~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v  380 (386)
T PF14583_consen  352 THPHPSFSPDGKWVLFRSDMEGPPAVYLV  380 (386)
T ss_dssp             T----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred             CCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence             24789999999887654 4677777643

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.64  E-value=0.065  Score=51.37  Aligned_cols=225  Identities=16%  Similarity=0.140  Sum_probs=123.4

Q ss_pred             CCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEE-----------
Q 008467          286 EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF-----------  354 (564)
Q Consensus       286 ~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~-----------  354 (564)
                      .++.|+.|..+| +.+++...........+..+|..+...|+-+.|++-+ |+.+.++++.........           
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~   83 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSL   83 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccc
Confidence            567899999988 8888873222222222344599999998877776654 599999998654332210           


Q ss_pred             --e-ecccCeEEEE---cCCCceEEEEeCCCeEEEEEcCCC-----ceeeEecCCCcceEEEEECCCCCEEEEEeCCCcE
Q 008467          355 --E-FHSGPTLDVD---WRNNVSFATSSTDNMIYVCKIGEN-----RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA  423 (564)
Q Consensus       355 --~-~~~~~~~~~~---~~~~~~~~~~~~d~~i~~~~~~~~-----~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i  423 (564)
                        . .....+..+.   ......++.......|.++.....     +..+.+.- ...+.+++|.  ++.|+.|..+ ..
T Consensus        84 ~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~--~~~i~v~~~~-~f  159 (275)
T PF00780_consen   84 PTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL--GNKICVGTSK-GF  159 (275)
T ss_pred             cccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe--CCEEEEEeCC-ce
Confidence              0 0111122222   223334444555557777766542     34444432 3567888888  5566666654 47


Q ss_pred             EEEeCCCCeeeeeccccc------------ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE--EEe
Q 008467          424 KIWNMKQDKYVHDLREHS------------KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY--SLN  489 (564)
Q Consensus       424 ~iwd~~~~~~~~~~~~~~------------~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~  489 (564)
                      .+.|+.++....-+....            .++..+...         ++ .+|++  .|..-.+.|. .|+...  .+.
T Consensus       160 ~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~-e~Ll~--~~~~g~fv~~-~G~~~r~~~i~  226 (275)
T PF00780_consen  160 YLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS---------DN-EFLLC--YDNIGVFVNK-NGEPSRKSTIQ  226 (275)
T ss_pred             EEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC---------Cc-eEEEE--ecceEEEEcC-CCCcCcccEEE
Confidence            778888665432221111            111111111         11 23332  2333333343 343322  222


Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC
Q 008467          490 GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN  533 (564)
Q Consensus       490 ~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~  533 (564)
                       -...+.++++.  ..||++.+.+ .|.||++.+|+++++....
T Consensus       227 -W~~~p~~~~~~--~pyli~~~~~-~iEV~~~~~~~lvQ~i~~~  266 (275)
T PF00780_consen  227 -WSSAPQSVAYS--SPYLIAFSSN-SIEVRSLETGELVQTIPLP  266 (275)
T ss_pred             -cCCchhEEEEE--CCEEEEECCC-EEEEEECcCCcEEEEEECC
Confidence             12344566663  4577776665 4999999999999988754

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.63  E-value=0.094  Score=52.85  Aligned_cols=188  Identities=15%  Similarity=0.155  Sum_probs=126.2

Q ss_pred             EcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC---CCcEEEEeCCCCeeeeeccccc
Q 008467          365 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD---DVTAKIWNMKQDKYVHDLREHS  441 (564)
Q Consensus       365 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~---dg~i~iwd~~~~~~~~~~~~~~  441 (564)
                      .......++....++.|.+.+....+.+....--. ....++++|+++.+..+..   ++++.+.|..+.+.......-.
T Consensus        82 ~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~  160 (381)
T COG3391          82 NPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN  160 (381)
T ss_pred             CCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC
Confidence            33445567777777888888866555443332111 4557899999977655544   6889999988888776644333


Q ss_pred             ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE-E----EeCCCCCEEEEEEcCCCCEEEEEeC---C
Q 008467          442 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY-S----LNGHREPVYSLAFSPTGEYLASGSL---D  513 (564)
Q Consensus       442 ~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~----~~~h~~~i~~~~~spdg~~lasgs~---d  513 (564)
                      .+ ..+++.|+|.        .+.++-..++.|.+.|........ .    .... ..-..++++|+|.++...-.   +
T Consensus       161 ~P-~~~a~~p~g~--------~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-~~P~~i~v~~~g~~~yV~~~~~~~  230 (381)
T COG3391         161 TP-TGVAVDPDGN--------KVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-TGPAGIAVDPDGNRVYVANDGSGS  230 (381)
T ss_pred             Cc-ceEEECCCCC--------eEEEEecCCCeEEEEeCCCcceeccccccccccC-CCCceEEECCCCCEEEEEeccCCC
Confidence            34 7788888775        244555678999999977555442 1    2212 23367899999996655433   3


Q ss_pred             CcEEEEeCCCCeEEEE-EecCC-CEEEEEEccCCCEEEEEEc-CCcEEEEEee
Q 008467          514 KSMHIWSLKEGKIVKT-YTGNG-GIFEVCWNKEGDKIAACFA-NHTVCVLDFR  563 (564)
Q Consensus       514 g~i~iw~~~~~~~~~~-~~~~~-~i~~~~w~~~g~~la~~~~-~~~v~v~~~~  563 (564)
                      +.+...|..++..... +.... ....+..+|+|+.+-+... .+.|.++|.+
T Consensus       231 ~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~  283 (381)
T COG3391         231 NNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGA  283 (381)
T ss_pred             ceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCC
Confidence            6999999999887765 33333 4667899999998877743 4778887753

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.62  E-value=0.058  Score=50.23  Aligned_cols=198  Identities=13%  Similarity=0.210  Sum_probs=112.6

Q ss_pred             eecCCCCCEEEEEeCCCCCE-EEEeeCCCcEEEEECCCcceeEEEeecc-cCeEEEEcCCCceEEEEe-CCCeEEEEEcC
Q 008467          311 TLSKHKGPIFSLKWNKKGDY-LLTGSCDKTAIVWDVKTEEWKQQFEFHS-GPTLDVDWRNNVSFATSS-TDNMIYVCKIG  387 (564)
Q Consensus       311 ~~~~h~~~V~~l~~~~~~~~-l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~d~~i~~~~~~  387 (564)
                      .+.+-...+.+|.|+|+.+. +++....+.|...+. .|++++.+.+.. +..-++.+..+..|+... .++.++++.+.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            45555667999999998664 556666778887886 577777776654 556778888888887766 47888888874


Q ss_pred             CCc---e---eeEec-----CCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCC---Ceee--eec------ccccccEE
Q 008467          388 ENR---P---IKTFA-----GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ---DKYV--HDL------REHSKEIY  445 (564)
Q Consensus       388 ~~~---~---~~~~~-----~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~---~~~~--~~~------~~~~~~i~  445 (564)
                      ...   .   +..+.     .++..+-.++|+|.++.|+.+-+....+||.++.   ...+  ...      ......+.
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S  174 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS  174 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence            321   1   11121     2445688999999888777777777777776543   1111  111      11233467


Q ss_pred             EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCC---------CCEEEEEEcCCCCEEEEEeCCCcE
Q 008467          446 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR---------EPVYSLAFSPTGEYLASGSLDKSM  516 (564)
Q Consensus       446 ~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~---------~~i~~~~~spdg~~lasgs~dg~i  516 (564)
                      ++.+.|...        .+++-......|..+| ..|+.+..+.-..         ...-.|+|.++|++.++ |.-+..
T Consensus       175 ~l~~~p~t~--------~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlf  244 (248)
T PF06977_consen  175 GLSYDPRTG--------HLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLF  244 (248)
T ss_dssp             EEEEETTTT--------EEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEE
T ss_pred             ceEEcCCCC--------eEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceE
Confidence            778877542        3566677888999999 5577665543211         23678999999976655 466655


Q ss_pred             EEE
Q 008467          517 HIW  519 (564)
Q Consensus       517 ~iw  519 (564)
                      ++|
T Consensus       245 y~f  247 (248)
T PF06977_consen  245 YRF  247 (248)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.62  E-value=0.0003  Score=70.86  Aligned_cols=93  Identities=20%  Similarity=0.408  Sum_probs=77.2

Q ss_pred             cccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEE-EEEEcCCCCEEEEEeCCCcEEEE
Q 008467          441 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVY-SLAFSPTGEYLASGSLDKSMHIW  519 (564)
Q Consensus       441 ~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~-~~~~spdg~~lasgs~dg~i~iw  519 (564)
                      ...+..+.|+|.-.         ++|.+..+|.|-+..+. .+.++++.-+..+++ +++|.|||+.||.|=.||+|++-
T Consensus        20 ~~~i~~~ewnP~~d---------LiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~   89 (665)
T KOG4640|consen   20 PINIKRIEWNPKMD---------LIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLH   89 (665)
T ss_pred             ccceEEEEEcCccc---------hhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEE
Confidence            45678889998654         78999999999998877 777888887777777 99999999999999999999999


Q ss_pred             eCCCCeEEEE--EecCCCEEEEEEcc
Q 008467          520 SLKEGKIVKT--YTGNGGIFEVCWNK  543 (564)
Q Consensus       520 ~~~~~~~~~~--~~~~~~i~~~~w~~  543 (564)
                      |+.+|..+..  +.....|..+-|++
T Consensus        90 Dve~~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   90 DVEKGGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             EccCCCceeccccccccchheeeccc
Confidence            9999988877  44455667777763

>smart00320 WD40 WD40 repeats

Probab=97.59  E-value=0.00026  Score=43.99  Aligned_cols=39  Identities=54%  Similarity=0.961  Sum_probs=34.4

Q ss_pred             CeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008467          482 GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS  520 (564)
Q Consensus       482 ~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~  520 (564)
                      ++++..+..|...|.++.|+|++.++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345667778888999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>smart00320 WD40 WD40 repeats

Probab=97.52  E-value=0.00027  Score=43.94  Aligned_cols=38  Identities=47%  Similarity=0.823  Sum_probs=33.6

Q ss_pred             ceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEe
Q 008467          390 RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN  427 (564)
Q Consensus       390 ~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd  427 (564)
                      .++..+..|...|.++.|++.+.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            34566778889999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.49  E-value=0.0051  Score=65.00  Aligned_cols=179  Identities=12%  Similarity=0.155  Sum_probs=94.0

Q ss_pred             CCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEe------CCCcEEEEeCCCCeeeeecccccccEEEEEEcc
Q 008467          378 DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS------DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP  451 (564)
Q Consensus       378 d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s------~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p  451 (564)
                      +|.+...+-..-.|+.-..+....+...+++|+|+.+|...      .|+.-.||-...+.....+.. ......-.|+|
T Consensus       328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~-g~~~t~PsWsp  406 (591)
T PRK13616        328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE-GHSLTRPSWSL  406 (591)
T ss_pred             CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec-CCCCCCceECC
Confidence            55554433222233333333334678899999999887665      354445554322221122221 22367788999


Q ss_pred             CCCCCCC--CCCcEEEEE-EeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEE---EeCCCCe
Q 008467          452 TGSGTNN--PNQQLILAS-ASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHI---WSLKEGK  525 (564)
Q Consensus       452 ~~~~~~~--~~~~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~i---w~~~~~~  525 (564)
                      +|.....  .......++ ....+.+.+.++..+....   .....|..+.|||||..||... +|.|++   -....|.
T Consensus       407 DG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~  482 (591)
T PRK13616        407 DADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ  482 (591)
T ss_pred             CCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc
Confidence            8652100  000111111 1123444444555444322   2345799999999999988765 477777   4444554


Q ss_pred             E-E---EEE-ecCCC-EEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467          526 I-V---KTY-TGNGG-IFEVCWNKEGDKIAACFANHTVCVLDF  562 (564)
Q Consensus       526 ~-~---~~~-~~~~~-i~~~~w~~~g~~la~~~~~~~v~v~~~  562 (564)
                      . +   ..+ ..-+. +.++.|..+++.+ ++..++...||-+
T Consensus       483 ~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v  524 (591)
T PRK13616        483 YALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV  524 (591)
T ss_pred             eeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence            1 1   011 12223 5789999999955 5555555555544

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.44  E-value=0.00065  Score=68.56  Aligned_cols=79  Identities=25%  Similarity=0.329  Sum_probs=70.6

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEE-EEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEE
Q 008467          276 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIF-SLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF  354 (564)
Q Consensus       276 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~-~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  354 (564)
                      ..|..+.|+|.-.++|++..+|.+.+...+-+...+++-|..+++ +++|.|+|+.|+.|-.||+|++.|+.++..+..+
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~  100 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSF  100 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceecc
Confidence            458889999999999999999999999888777777887877887 9999999999999999999999999998877664

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.43  E-value=0.19  Score=51.52  Aligned_cols=241  Identities=16%  Similarity=0.244  Sum_probs=124.4

Q ss_pred             ceEEEEECCCCCEEEEE-ECC----CcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEE
Q 008467          218 EVCACAWSPAGSLLASG-SGD----STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLAT  292 (564)
Q Consensus       218 ~V~~~~~sp~~~~lasg-s~D----~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~s  292 (564)
                      .+..+++||+|++||.+ +..    ..+++.|+.+++...         ..+...         .-..+.|.++++.|+.
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~---------d~i~~~---------~~~~~~W~~d~~~~~y  186 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP---------DGIENP---------KFSSVSWSDDGKGFFY  186 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE---------EEEEEE---------ESEEEEECTTSSEEEE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC---------Cccccc---------ccceEEEeCCCCEEEE
Confidence            34468899999988754 222    469999998764210         011110         1234899999988777


Q ss_pred             EeCCC-----------eEEEEECCCce---eEeecCCCCC--EEEEEeCCCCCEEEEeeCC----CcEEEEECCCc----
Q 008467          293 GSYDG-----------QARIWSTNGDL---KCTLSKHKGP--IFSLKWNKKGDYLLTGSCD----KTAIVWDVKTE----  348 (564)
Q Consensus       293 g~~dg-----------~i~vw~~~~~~---~~~~~~h~~~--V~~l~~~~~~~~l~s~s~D----~~v~iwd~~~~----  348 (564)
                      ...+.           .|+.|......   ...+.....+  ...+..++++++|+..+..    ..+.+.|+..+    
T Consensus       187 ~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~  266 (414)
T PF02897_consen  187 TRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPD  266 (414)
T ss_dssp             EECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS
T ss_pred             EEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCc
Confidence            66543           36777765432   2344443333  5678899999997654332    23666677664    


Q ss_pred             -ceeEEEeecccCeEEEEcCCCceEEEEe---CCCeEEEEEcCCCce---eeEecCCCc--ceEEEEECCCCCEEEEEeC
Q 008467          349 -EWKQQFEFHSGPTLDVDWRNNVSFATSS---TDNMIYVCKIGENRP---IKTFAGHQG--EVNCVKWDPTGSLLASCSD  419 (564)
Q Consensus       349 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~i~~~~~~~~~~---~~~~~~h~~--~i~~v~~~~~~~~las~s~  419 (564)
                       .+........+....+...++..++.+.   ..+.|...++.....   ...+..|..  .+..+... .+.++++-..
T Consensus       267 ~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~Lvl~~~~  345 (414)
T PF02897_consen  267 AKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF-KDYLVLSYRE  345 (414)
T ss_dssp             -SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE-TTEEEEEEEE
T ss_pred             CCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE-CCEEEEEEEE
Confidence             3333333233333445555555555443   345677777766542   224455554  34444443 2334455555


Q ss_pred             CC--cEEEEeCCCCeeeeeccc-ccccEEEEEEccCCCCCCCCCCcEEEEEEeCC--CeEEEEeCCCCeE
Q 008467          420 DV--TAKIWNMKQDKYVHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASASFD--STVKLWDVELGKL  484 (564)
Q Consensus       420 dg--~i~iwd~~~~~~~~~~~~-~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d--g~i~iwd~~~~~~  484 (564)
                      ++  .|+++++..+.....+.. -.+.|..+...+..       ..+.+...|.-  +++.-||+.+++.
T Consensus       346 ~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~-------~~~~~~~ss~~~P~~~y~~d~~t~~~  408 (414)
T PF02897_consen  346 NGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDS-------DELRFSYSSFTTPPTVYRYDLATGEL  408 (414)
T ss_dssp             TTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT--------SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred             CCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCC-------CEEEEEEeCCCCCCEEEEEECCCCCE
Confidence            55  477888873333332222 22334443322222       22334444433  5677777777764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.43  E-value=0.06  Score=53.00  Aligned_cols=208  Identities=14%  Similarity=0.158  Sum_probs=117.4

Q ss_pred             cEEEEECCCcceeEEEeecccC-eE---EEEcCC-----CceEEEEeC---------C-CeEEEEEcCCC----ceeeEe
Q 008467          339 TAIVWDVKTEEWKQQFEFHSGP-TL---DVDWRN-----NVSFATSST---------D-NMIYVCKIGEN----RPIKTF  395 (564)
Q Consensus       339 ~v~iwd~~~~~~~~~~~~~~~~-~~---~~~~~~-----~~~~~~~~~---------d-~~i~~~~~~~~----~~~~~~  395 (564)
                      .|++.|..+.+.+..+.+.... +.   .+.+..     ...++.|..         . |.|+++.+...    ..+...
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i   82 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI   82 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred             EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence            5777777777766666554432 22   222332     334444421         2 88999999884    222222


Q ss_pred             --cCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCe-eeee-cccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC
Q 008467          396 --AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK-YVHD-LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD  471 (564)
Q Consensus       396 --~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~-~~~~-~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d  471 (564)
                        ....+.|.+++-- .+.++++.  .+.|.+|++...+ .... +......+.++....+           +++.|...
T Consensus        83 ~~~~~~g~V~ai~~~-~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~-----------~I~vgD~~  148 (321)
T PF03178_consen   83 HSTEVKGPVTAICSF-NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKN-----------YILVGDAM  148 (321)
T ss_dssp             EEEEESS-EEEEEEE-TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETT-----------EEEEEESS
T ss_pred             EEEeecCcceEhhhh-CCEEEEee--cCEEEEEEccCcccchhhheecceEEEEEEecccc-----------EEEEEEcc
Confidence              2346778888765 44444333  4789999988776 3322 1122235666655422           57778877


Q ss_pred             CeEEEEeCCC-CeEEEEE--eCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-------C--eEE--EEEecCCCEE
Q 008467          472 STVKLWDVEL-GKLLYSL--NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE-------G--KIV--KTYTGNGGIF  537 (564)
Q Consensus       472 g~i~iwd~~~-~~~~~~~--~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~-------~--~~~--~~~~~~~~i~  537 (564)
                      ..|.++..+. +..+..+  ......++++.|-+|++.++.+..+|.|.++....       +  ++.  ..+.-...|+
T Consensus       149 ~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~  228 (321)
T PF03178_consen  149 KSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVN  228 (321)
T ss_dssp             SSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EE
T ss_pred             cCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccc
Confidence            7888774432 3322222  22345688999987778999999999999998763       2  222  3344455577


Q ss_pred             EE---EEcc--CCC------EEEEEEcCCcEEEE
Q 008467          538 EV---CWNK--EGD------KIAACFANHTVCVL  560 (564)
Q Consensus       538 ~~---~w~~--~g~------~la~~~~~~~v~v~  560 (564)
                      .+   +..|  .+.      .+..+..+|.+.++
T Consensus       229 ~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  229 SFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             EEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             eEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            66   5555  222      47888899988743

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.40  E-value=0.18  Score=50.78  Aligned_cols=217  Identities=18%  Similarity=0.152  Sum_probs=140.2

Q ss_pred             EEEEeCCCCCEEE-EeeCCCcEEEEECCCcceeEEEeeccc-CeEEEEcCCCceEEEEe--CCCeEEEEEcCCCceeeEe
Q 008467          320 FSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEFHSG-PTLDVDWRNNVSFATSS--TDNMIYVCKIGENRPIKTF  395 (564)
Q Consensus       320 ~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~d~~i~~~~~~~~~~~~~~  395 (564)
                      .++..++.++.++ +...++.|.+.|..+............ ..+.+++.....+++-.  .++.+.+.+-.+.+.+...
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~  156 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATI  156 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEE
Confidence            4567788887554 444568999999877776665544332 33445555556666666  4788888888888777664


Q ss_pred             cCCCcceEEEEECCCCCEEEEE-eCCCcEEEEeCCCCeeee-e---cccccccEEEEEEccCCCCCCCCCCcEEEEEEeC
Q 008467          396 AGHQGEVNCVKWDPTGSLLASC-SDDVTAKIWNMKQDKYVH-D---LREHSKEIYTIRWSPTGSGTNNPNQQLILASASF  470 (564)
Q Consensus       396 ~~h~~~i~~v~~~~~~~~las~-s~dg~i~iwd~~~~~~~~-~---~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~  470 (564)
                      ..-..+ ..++++|+|+.+..+ ..++.|.+.|........ .   ...-...-..+.+.|++.        .+.++...
T Consensus       157 ~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~--------~~yV~~~~  227 (381)
T COG3391         157 PVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGN--------RVYVANDG  227 (381)
T ss_pred             ecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCC--------EEEEEecc
Confidence            433334 789999999965554 478999999977655442 1   011112235677777774        22233322


Q ss_pred             --CCeEEEEeCCCCeEEEE-EeCCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCeEEEEEecCC----CEEEEEEc
Q 008467          471 --DSTVKLWDVELGKLLYS-LNGHREPVYSLAFSPTGEYLASGSL-DKSMHIWSLKEGKIVKTYTGNG----GIFEVCWN  542 (564)
Q Consensus       471 --dg~i~iwd~~~~~~~~~-~~~h~~~i~~~~~spdg~~lasgs~-dg~i~iw~~~~~~~~~~~~~~~----~i~~~~w~  542 (564)
                        ++.+...|..++..... ...-......+.++|+|+++.+... .+.+.+-|..+..+.+......    .+..+++.
T Consensus       228 ~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~  307 (381)
T COG3391         228 SGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAIS  307 (381)
T ss_pred             CCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccce
Confidence              36899999988777654 2211113466899999999887744 4889999999888877764322    25556665


Q ss_pred             cCC
Q 008467          543 KEG  545 (564)
Q Consensus       543 ~~g  545 (564)
                      +..
T Consensus       308 ~~~  310 (381)
T COG3391         308 PLY  310 (381)
T ss_pred             eec
Confidence            544

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.38  E-value=0.077  Score=53.27  Aligned_cols=235  Identities=14%  Similarity=0.233  Sum_probs=121.4

Q ss_pred             CEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCC---------
Q 008467          318 PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE---------  388 (564)
Q Consensus       318 ~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~---------  388 (564)
                      .|+.+.|.++..-|+.|-..|.|.||-....+...  .....+..+..+.   .+-.....+.  +.|+..         
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~---~~~~~~~~~~--l~di~~r~~~~~~~g   75 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFR---RFSLNNSPGK--LTDISDRAPPSLKEG   75 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE-----------------------S--GGGSS-S--EEE-GGG--TT-SEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccc---cccccCCCcc--eEEehhhCCcccccc
Confidence            58899999999999999999999998654332111  0000001110000   0000000000  111111         


Q ss_pred             CceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeee--ccc------ccccEEEEEEccCCCCCCCCC
Q 008467          389 NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD--LRE------HSKEIYTIRWSPTGSGTNNPN  460 (564)
Q Consensus       389 ~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~--~~~------~~~~i~~i~~~p~~~~~~~~~  460 (564)
                      -.|...+....++|++++.| |=.++|.|..+|.+.|.|++....+..  +..      ....++++.|..-... .+.-
T Consensus        76 f~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~-~D~y  153 (395)
T PF08596_consen   76 FLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLG-GDGY  153 (395)
T ss_dssp             EEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-T-TSSS
T ss_pred             cCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecC-CCcc
Confidence            12445555668899999997 667999999999999999988877654  222      2345788888743221 1122


Q ss_pred             CcEEEEEEeCCCeEEEEeCCC---CeE----EEEEeCCCCCEEEEE-EcCC-C--------------------CEEEEEe
Q 008467          461 QQLILASASFDSTVKLWDVEL---GKL----LYSLNGHREPVYSLA-FSPT-G--------------------EYLASGS  511 (564)
Q Consensus       461 ~~~~l~s~s~dg~i~iwd~~~---~~~----~~~~~~h~~~i~~~~-~spd-g--------------------~~lasgs  511 (564)
                      ....|..|...|.+.+|.+.-   +.-    ......+.++|..|. |+.+ |                    .++++++
T Consensus       154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS  233 (395)
T PF08596_consen  154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS  233 (395)
T ss_dssp             EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred             cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence            345788899999999998641   211    112224667777665 5322 1                    1344444


Q ss_pred             CCCcEEEEeCCCCeEEEEEecCC-CEEEEEE-----ccCCCEEEEEEcCCcEEEEEe
Q 008467          512 LDKSMHIWSLKEGKIVKTYTGNG-GIFEVCW-----NKEGDKIAACFANHTVCVLDF  562 (564)
Q Consensus       512 ~dg~i~iw~~~~~~~~~~~~~~~-~i~~~~w-----~~~g~~la~~~~~~~v~v~~~  562 (564)
                       +..++|+...+.+..+...... ....+++     ...+..|++-+.+|.+.+|.+
T Consensus       234 -e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SL  289 (395)
T PF08596_consen  234 -ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSL  289 (395)
T ss_dssp             -SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEET
T ss_pred             -ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEEC
Confidence             5669999998877654433221 1223445     345677888889999999864

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.36  E-value=0.16  Score=48.94  Aligned_cols=247  Identities=14%  Similarity=0.189  Sum_probs=129.5

Q ss_pred             EEECCCCCEEEEEE----------CCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEE
Q 008467          222 CAWSPAGSLLASGS----------GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA  291 (564)
Q Consensus       222 ~~~sp~~~~lasgs----------~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~  291 (564)
                      +..+|+++.+++++          ..-.|.+||..+-..        .....+...+ +.. .......+++|.||++++
T Consensus        41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~--------~~EI~iP~k~-R~~-~~~~~~~~~ls~dgk~~~  110 (342)
T PF06433_consen   41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSP--------TGEIEIPPKP-RAQ-VVPYKNMFALSADGKFLY  110 (342)
T ss_dssp             EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEE--------EEEEEETTS--B---BS--GGGEEE-TTSSEEE
T ss_pred             eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcc--------cceEecCCcc-hhe-ecccccceEEccCCcEEE
Confidence            56789999887654          244688999765321        1111111000 000 001123357788888877


Q ss_pred             EEeC--CCeEEEEECCCcee-EeecCCCCCEEEEEeCCC-CCEEEEeeCCCcEEEEECC-CcceeEEE----eecccCeE
Q 008467          292 TGSY--DGQARIWSTNGDLK-CTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVK-TEEWKQQF----EFHSGPTL  362 (564)
Q Consensus       292 sg~~--dg~i~vw~~~~~~~-~~~~~h~~~V~~l~~~~~-~~~l~s~s~D~~v~iwd~~-~~~~~~~~----~~~~~~~~  362 (564)
                      ..-.  --.|.|-|+..+.. ..+. -.+- ..+ + |. ...|.+-+.||++.-..+. .|+..+.-    .....+++
T Consensus       111 V~N~TPa~SVtVVDl~~~kvv~ei~-~PGC-~~i-y-P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f  186 (342)
T PF06433_consen  111 VQNFTPATSVTVVDLAAKKVVGEID-TPGC-WLI-Y-PSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLF  186 (342)
T ss_dssp             EEEESSSEEEEEEETTTTEEEEEEE-GTSE-EEE-E-EEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-
T ss_pred             EEccCCCCeEEEEECCCCceeeeec-CCCE-EEE-E-ecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccc
Confidence            6543  34677777665433 2222 1221 111 1 22 2468888999999888876 44443221    11112222


Q ss_pred             -EEEc-CCCceEEEEeCCCeEEEEEcCCCcee--eEecCC----------CcceEEEEECCCCCEEEEEe---C-----C
Q 008467          363 -DVDW-RNNVSFATSSTDNMIYVCKIGENRPI--KTFAGH----------QGEVNCVKWDPTGSLLASCS---D-----D  420 (564)
Q Consensus       363 -~~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~--~~~~~h----------~~~i~~v~~~~~~~~las~s---~-----d  420 (564)
                       .-.+ .....++-.+-+|.|+..++....+.  ..+.--          .+.-.-+++++..+.|..--   .     |
T Consensus       187 ~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKd  266 (342)
T PF06433_consen  187 EHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKD  266 (342)
T ss_dssp             S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS
T ss_pred             cccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccC
Confidence             1112 23345666778888888888765432  122110          01223477777655544321   1     2


Q ss_pred             C--cEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEE-EEeCCCeEEEEeCCCCeEEEEEeCC
Q 008467          421 V--TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILA-SASFDSTVKLWDVELGKLLYSLNGH  491 (564)
Q Consensus       421 g--~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~h  491 (564)
                      +  .|-++|+.+++.+..+.. ..++.+|..+.+..        .+|. ....++.+.+||..+|+.+.++..-
T Consensus       267 pgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~--------P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l  331 (342)
T PF06433_consen  267 PGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDK--------PLLYALSAGDGTLDVYDAATGKLVRSIEQL  331 (342)
T ss_dssp             -EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS---------EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred             CceEEEEEECCCCeEEEEEeC-CCccceEEEccCCC--------cEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence            2  367778999998877653 23567888876543        2444 4456899999999999999888643

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.33  E-value=0.012  Score=63.22  Aligned_cols=134  Identities=14%  Similarity=0.177  Sum_probs=93.5

Q ss_pred             eCCCcEEEEECCCcceeEEEeecccC-eEEEEcC------CCceEEEEeCCCeEEEEEcCCCc-eeeEecC----CCcce
Q 008467          335 SCDKTAIVWDVKTEEWKQQFEFHSGP-TLDVDWR------NNVSFATSSTDNMIYVCKIGENR-PIKTFAG----HQGEV  402 (564)
Q Consensus       335 s~D~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~d~~i~~~~~~~~~-~~~~~~~----h~~~i  402 (564)
                      .....|.-.|+.+|+++..+..+... +.++...      .+.....|-.++.++.||.+-.. .+..-.+    .....
T Consensus       501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F  580 (794)
T PF08553_consen  501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF  580 (794)
T ss_pred             CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence            34578899999999999999988754 6666542      22345567778889999876532 1111112    23468


Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeC
Q 008467          403 NCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV  479 (564)
Q Consensus       403 ~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~  479 (564)
                      +|++-+.+|. ||.||.+|.||+||--..+.-..|.+-..+|..|..+.+|.        .+||||  +..+-+++.
T Consensus       581 s~~aTt~~G~-iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGk--------wilaTc--~tyLlLi~t  646 (794)
T PF08553_consen  581 SCFATTEDGY-IAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGK--------WILATC--KTYLLLIDT  646 (794)
T ss_pred             eEEEecCCce-EEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCc--------EEEEee--cceEEEEEE
Confidence            8898887764 78999999999999543333344556788999999999886        456665  466777774

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.32  E-value=6.7e-05  Score=75.37  Aligned_cols=122  Identities=18%  Similarity=0.332  Sum_probs=82.7

Q ss_pred             EccCCccceEEEEECC-CCCEEEEEE----CCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC
Q 008467          211 ILEGHTSEVCACAWSP-AGSLLASGS----GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG  285 (564)
Q Consensus       211 ~l~~h~~~V~~~~~sp-~~~~lasgs----~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~  285 (564)
                      +..+|....++++|++ |.++||.|-    .|..+.|||+.+.-..+      .....+   .+   .....+.+++|-.
T Consensus        97 ~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvP------ke~~~f---s~---~~l~gqns~cwlr  164 (783)
T KOG1008|consen   97 VTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVP------KESPLF---SS---STLDGQNSVCWLR  164 (783)
T ss_pred             ecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCC------cccccc---cc---ccccCcccccccc
Confidence            4456778899999999 567787763    56789999998753221      111111   11   1123455889998


Q ss_pred             CCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCC-CCCEEEEeeCCCcEEEEEC
Q 008467          286 EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDV  345 (564)
Q Consensus       286 ~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~  345 (564)
                      +.+++.+|.....+.++|............+..|.++...| .++|+++-+ |+.|.+||.
T Consensus       165 d~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~  224 (783)
T KOG1008|consen  165 DTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDT  224 (783)
T ss_pred             CcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccc
Confidence            88999999999999999876443332233344566677777 667777665 999999993

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.27  E-value=0.0071  Score=60.08  Aligned_cols=139  Identities=11%  Similarity=0.195  Sum_probs=91.6

Q ss_pred             ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCE-------EEEEeCCCcEEEEeCCCCee--eeecccc
Q 008467          370 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSL-------LASCSDDVTAKIWNMKQDKY--VHDLREH  440 (564)
Q Consensus       370 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~-------las~s~dg~i~iwd~~~~~~--~~~~~~~  440 (564)
                      ..+..+.....++-.|+..++.+..+.-|.. |+-+.+.|+.+.       -+.|-+|..|.-||++-...  +.....|
T Consensus       347 lil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k  425 (644)
T KOG2395|consen  347 LILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK  425 (644)
T ss_pred             eEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence            3455566667788889999998888887766 777788876542       23466778888899873322  1111111


Q ss_pred             c----ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE-EEEEeCCCCCEEEEEEcCCCCEEEEEeCCCc
Q 008467          441 S----KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-LYSLNGHREPVYSLAFSPTGEYLASGSLDKS  515 (564)
Q Consensus       441 ~----~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~h~~~i~~~~~spdg~~lasgs~dg~  515 (564)
                      .    ....|++  ..+.        -+++.||.+|.||+||- .++. ...+.+...+|..|..+.||+||++.+ +..
T Consensus       426 qy~~k~nFsc~a--TT~s--------G~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~ty  493 (644)
T KOG2395|consen  426 QYSTKNNFSCFA--TTES--------GYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTY  493 (644)
T ss_pred             ccccccccceee--ecCC--------ceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccE
Confidence            1    1112222  2222        26899999999999997 4443 344677788999999999999987554 445


Q ss_pred             EEEEeC
Q 008467          516 MHIWSL  521 (564)
Q Consensus       516 i~iw~~  521 (564)
                      +.+-++
T Consensus       494 LlLi~t  499 (644)
T KOG2395|consen  494 LLLIDT  499 (644)
T ss_pred             EEEEEE
Confidence            655554

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.26  E-value=0.05  Score=42.99  Aligned_cols=91  Identities=13%  Similarity=0.181  Sum_probs=63.9

Q ss_pred             EEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEE-
Q 008467          463 LILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCW-  541 (564)
Q Consensus       463 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w-  541 (564)
                      .-|+.||.|..||+|+-.  ..+.++... ..|++++-... ..++-|-.+|+|-+|+-.  ..+........+.++++ 
T Consensus        16 ~eLlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWRiKSK~~~~~~~~~   89 (111)
T PF14783_consen   16 NELLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWRIKSKNQVTSMAFY   89 (111)
T ss_pred             ceEEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeeeeccCCCeEEEEEE
Confidence            358889999999999754  677777754 46778877665 557778889999999753  33344444555666554 


Q ss_pred             --ccCC-CEEEEEEcCCcEEE
Q 008467          542 --NKEG-DKIAACFANHTVCV  559 (564)
Q Consensus       542 --~~~g-~~la~~~~~~~v~v  559 (564)
                        +.|| .-|++|..||.|-+
T Consensus        90 D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   90 DINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             cCCCCCceEEEEEecCCeEEe
Confidence              3344 37899999998743

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.25  E-value=0.21  Score=48.26  Aligned_cols=146  Identities=12%  Similarity=0.156  Sum_probs=89.6

Q ss_pred             cceEEEEECCCCCEEEEEeC-----C----CcEEEEeCC-CCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEe
Q 008467          400 GEVNCVKWDPTGSLLASCSD-----D----VTAKIWNMK-QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASAS  469 (564)
Q Consensus       400 ~~i~~v~~~~~~~~las~s~-----d----g~i~iwd~~-~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s  469 (564)
                      ...+.+...|+|.+.++...     .    ..-.||-+. .+..+.-+..+-..-..|+|+|++.        .+.++=+
T Consensus       111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~--------tly~aDT  182 (307)
T COG3386         111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGK--------TLYVADT  182 (307)
T ss_pred             CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCC--------EEEEEeC
Confidence            34667888899988665443     0    112455554 3444444444344446789999885        2455555


Q ss_pred             CCCeEEEEeCCC--C----eE-EEEEeCCCCCEEEEEEcCCCCEEEEEeCCC-cEEEEeCCCCeEEEEEecC-CCEEEEE
Q 008467          470 FDSTVKLWDVEL--G----KL-LYSLNGHREPVYSLAFSPTGEYLASGSLDK-SMHIWSLKEGKIVKTYTGN-GGIFEVC  540 (564)
Q Consensus       470 ~dg~i~iwd~~~--~----~~-~~~~~~h~~~i~~~~~spdg~~lasgs~dg-~i~iw~~~~~~~~~~~~~~-~~i~~~~  540 (564)
                      ..+.|.-|++..  +    +. ...+....+..-.++...+|.+.+++-.+| .|.+|+.. |+++..+.-. ..+..++
T Consensus       183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~  261 (307)
T COG3386         183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPA  261 (307)
T ss_pred             CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccce
Confidence            667787777652  1    11 122222334456677788888886555554 89999988 9988888766 5677777


Q ss_pred             Ec-cCCCEEEEEEcC
Q 008467          541 WN-KEGDKIAACFAN  554 (564)
Q Consensus       541 w~-~~g~~la~~~~~  554 (564)
                      |- ++.+.|.+.+..
T Consensus       262 FgG~~~~~L~iTs~~  276 (307)
T COG3386         262 FGGPDLNTLYITSAR  276 (307)
T ss_pred             EeCCCcCEEEEEecC
Confidence            74 455666655444

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.25  E-value=0.0081  Score=64.53  Aligned_cols=135  Identities=15%  Similarity=0.223  Sum_probs=91.8

Q ss_pred             EeCCCeEEEEEcCCCceeeEecCCCcc-eEEEEECC-----CCCEEEEEeCCCcEEEEeCCCCe--eeee-cc--ccccc
Q 008467          375 SSTDNMIYVCKIGENRPIKTFAGHQGE-VNCVKWDP-----TGSLLASCSDDVTAKIWNMKQDK--YVHD-LR--EHSKE  443 (564)
Q Consensus       375 ~~~d~~i~~~~~~~~~~~~~~~~h~~~-i~~v~~~~-----~~~~las~s~dg~i~iwd~~~~~--~~~~-~~--~~~~~  443 (564)
                      ....+.++..|+..++.+..+..|... |..++-..     +..-.+.|-.+..+..||.+-..  ++.. .+  .....
T Consensus       500 ~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~  579 (794)
T PF08553_consen  500 PNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNN  579 (794)
T ss_pred             CCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCC
Confidence            345678999999999999999887654 55543221     12334568888899999987542  2211 11  12233


Q ss_pred             EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE-EEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 008467          444 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL  521 (564)
Q Consensus       444 i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~  521 (564)
                      ..|++-...|          .||.||.+|.||+||- .|+. ...+.+-..||..|..+.||+||++.+ +..|.++++
T Consensus       580 Fs~~aTt~~G----------~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  580 FSCFATTEDG----------YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             ceEEEecCCc----------eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence            4555555444          6899999999999994 3433 334566789999999999999987655 445767775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.25  E-value=0.33  Score=51.05  Aligned_cols=236  Identities=14%  Similarity=0.093  Sum_probs=125.7

Q ss_pred             CCEEEEeeCCCcEEEEECCCcceeEEEeeccc----CeEE-EEcCCCceEEEEe-----CCCeEEEEEcCCCceeeEecC
Q 008467          328 GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG----PTLD-VDWRNNVSFATSS-----TDNMIYVCKIGENRPIKTFAG  397 (564)
Q Consensus       328 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~-----~d~~i~~~~~~~~~~~~~~~~  397 (564)
                      +..++.++.|+.+...|..+++.+-.+.....    .+.. -...++..++..+     .++.|+-++..+++.+-.+..
T Consensus       120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~  199 (527)
T TIGR03075       120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT  199 (527)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence            34677888999999999999987765443110    0000 0011333343322     257788878777654432211


Q ss_pred             C-------------------------------Ccce-EEEEECCCCCEEEEEeCC-----C-----------cEEEEeCC
Q 008467          398 H-------------------------------QGEV-NCVKWDPTGSLLASCSDD-----V-----------TAKIWNMK  429 (564)
Q Consensus       398 h-------------------------------~~~i-~~v~~~~~~~~las~s~d-----g-----------~i~iwd~~  429 (564)
                      -                               .+.+ ..+.++|...+|..+...     +           +|.--|++
T Consensus       200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~  279 (527)
T TIGR03075       200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD  279 (527)
T ss_pred             cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence            0                               0111 134667766666655522     2           45556777


Q ss_pred             CCeeeeecccccccEEEEEE--ccCCCC-CCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEE------------eCCC-C
Q 008467          430 QDKYVHDLREHSKEIYTIRW--SPTGSG-TNNPNQQLILASASFDSTVKLWDVELGKLLYSL------------NGHR-E  493 (564)
Q Consensus       430 ~~~~~~~~~~~~~~i~~i~~--~p~~~~-~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~------------~~h~-~  493 (564)
                      +++..-.++.....+.....  .|.-.. ..+.....+++.+..+|.+.+.|.++|+.+...            .... .
T Consensus       280 TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~  359 (527)
T TIGR03075       280 TGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGR  359 (527)
T ss_pred             cCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCC
Confidence            77776555432222221110  000000 000111247888999999999999999886321            0000 0


Q ss_pred             CE----------------------------EEEEEcCCCCEEEEEeCC--------------------------------
Q 008467          494 PV----------------------------YSLAFSPTGEYLASGSLD--------------------------------  513 (564)
Q Consensus       494 ~i----------------------------~~~~~spdg~~lasgs~d--------------------------------  513 (564)
                      ++                            ..++|+|+..++.....+                                
T Consensus       360 p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~  439 (527)
T TIGR03075       360 PIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDH  439 (527)
T ss_pred             CccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCC
Confidence            11                            125677766555432222                                


Q ss_pred             -CcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          514 -KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       514 -g~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                       |.|.-+|+.+|+++..+........-.....|..+.++..+|.+..+|.+
T Consensus       440 ~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~  490 (527)
T TIGR03075       440 MGSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAK  490 (527)
T ss_pred             ceeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECC
Confidence             46888888888887766543221111112355667777778888888754

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.06  E-value=0.088  Score=49.02  Aligned_cols=194  Identities=14%  Similarity=0.197  Sum_probs=104.3

Q ss_pred             EccCCccceEEEEECCCCC-EEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE
Q 008467          211 ILEGHTSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL  289 (564)
Q Consensus       211 ~l~~h~~~V~~~~~sp~~~-~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~  289 (564)
                      .+.+-...+..++|+|+.. +++.....+.|...+.. |..             ++...-   ....+.-.+++..++.+
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~v-------------lr~i~l---~g~~D~EgI~y~g~~~~   78 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKV-------------LRRIPL---DGFGDYEGITYLGNGRY   78 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---E-------------EEEEE----SS-SSEEEEEE-STTEE
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCE-------------EEEEeC---CCCCCceeEEEECCCEE
Confidence            3445556799999999855 55556667777666653 321             111111   11356788899888887


Q ss_pred             EEEEeCCCeEEEEECCC--c---e--eE--e--e-cCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC---cceeEEE
Q 008467          290 LATGSYDGQARIWSTNG--D---L--KC--T--L-SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT---EEWKQQF  354 (564)
Q Consensus       290 l~sg~~dg~i~vw~~~~--~---~--~~--~--~-~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~---~~~~~~~  354 (564)
                      +++--.++.+.+.+...  .   .  ..  .  + ..++..+-+|+|+|.++.|+.+-...-..++.+..   .......
T Consensus        79 vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~  158 (248)
T PF06977_consen   79 VLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVS  158 (248)
T ss_dssp             EEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEE
T ss_pred             EEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeec
Confidence            77766688888887621  1   1  01  1  1 13556789999999998888887666666776543   1111111


Q ss_pred             e----------ecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEec--C-CC------cceEEEEECCCCCEEE
Q 008467          355 E----------FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA--G-HQ------GEVNCVKWDPTGSLLA  415 (564)
Q Consensus       355 ~----------~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~--~-h~------~~i~~v~~~~~~~~la  415 (564)
                      .          ......+.++...+..++.+.....+..++ ..++++..+.  . ..      ...-.|+|.++|++.+
T Consensus       159 ~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI  237 (248)
T PF06977_consen  159 DDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI  237 (248)
T ss_dssp             E-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE
T ss_pred             cccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE
Confidence            0          011123344555667788888888888888 4455554432  2 11      2356899999997665


Q ss_pred             EEeCCCcE
Q 008467          416 SCSDDVTA  423 (564)
Q Consensus       416 s~s~dg~i  423 (564)
                      ++ +-+..
T Consensus       238 vs-EpNlf  244 (248)
T PF06977_consen  238 VS-EPNLF  244 (248)
T ss_dssp             EE-TTTEE
T ss_pred             Ec-CCceE
Confidence            44 54433

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.06  E-value=0.02  Score=61.71  Aligned_cols=76  Identities=24%  Similarity=0.427  Sum_probs=61.1

Q ss_pred             CCCEEEEEeCCCeEEEEECCCceeE--eecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCe
Q 008467          286 EGTLLATGSYDGQARIWSTNGDLKC--TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT  361 (564)
Q Consensus       286 ~g~~l~sg~~dg~i~vw~~~~~~~~--~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~  361 (564)
                      .+..++.|+..|.+-..|..+.+..  .-..-.++|++++|+.+|..++.|-.+|.|.+||...++..+.+..+..+.
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~  175 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPV  175 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCcc
Confidence            3456888888899888887776542  223346899999999999999999999999999999988888777666553

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.03  E-value=0.059  Score=57.14  Aligned_cols=182  Identities=13%  Similarity=0.209  Sum_probs=96.1

Q ss_pred             cceEEEEECCCCCEEEEEE------CCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEE
Q 008467          217 SEVCACAWSPAGSLLASGS------GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL  290 (564)
Q Consensus       217 ~~V~~~~~sp~~~~lasgs------~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l  290 (564)
                      ..+...+.||+|+.+|...      .|..-.||-...+...        .  .+  ..      ....+.-.|+|+|..+
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~--------~--~l--t~------g~~~t~PsWspDG~~l  411 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA--------V--QV--LE------GHSLTRPSWSLDADAV  411 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc--------e--ee--ec------CCCCCCceECCCCCce
Confidence            3567889999998776654      3555566644321100        0  00  00      1236677899999887


Q ss_pred             EEEeCC-CeEEEEE-----------CCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEE---EECCCcceeE---
Q 008467          291 ATGSYD-GQARIWS-----------TNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIV---WDVKTEEWKQ---  352 (564)
Q Consensus       291 ~sg~~d-g~i~vw~-----------~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~i---wd~~~~~~~~---  352 (564)
                      ++.... ..+++.+           .++.....  ...+.|..++|+|||.+++... ++.|.+   -....+...-   
T Consensus       412 w~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~  488 (591)
T PRK13616        412 WVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNP  488 (591)
T ss_pred             EEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeeccc
Confidence            776532 2233332           22211111  3356799999999999987665 467766   3333443111   


Q ss_pred             -EEeecc-cCeEEEEcCCCceEEEEeCCCe--EEEEEcCCCceeeEecC--CCcceEEEEECCCCCEEEEEeCCCc
Q 008467          353 -QFEFHS-GPTLDVDWRNNVSFATSSTDNM--IYVCKIGENRPIKTFAG--HQGEVNCVKWDPTGSLLASCSDDVT  422 (564)
Q Consensus       353 -~~~~~~-~~~~~~~~~~~~~~~~~~~d~~--i~~~~~~~~~~~~~~~~--h~~~i~~v~~~~~~~~las~s~dg~  422 (564)
                       .+.... ..+.++.|..+..++....+..  ++...++..... .+.+  ....+..|+-+++ . ++....++.
T Consensus       489 ~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~-~~~~~n~~~~v~~vaa~~~-~-iyv~~~~g~  561 (591)
T PRK13616        489 REVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSD-ALPSRNLSAPVVAVAASPS-T-VYVTDARAV  561 (591)
T ss_pred             EEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCcccc-ccCCCCccCceEEEecCCc-e-EEEEcCCce
Confidence             112222 2357789988877766544443  444344322211 1122  2445666666652 2 334444553

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.93  E-value=0.43  Score=46.14  Aligned_cols=216  Identities=14%  Similarity=0.125  Sum_probs=105.9

Q ss_pred             ECCCCC-EEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecc-c-
Q 008467          283 WNGEGT-LLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS-G-  359 (564)
Q Consensus       283 ~s~~g~-~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~-  359 (564)
                      |.++.. ++.+--..+.|.-|+........+. +.+.+.++..-..+..|+++.  .-+.++++.++..+..+.... + 
T Consensus        32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~-~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~  108 (307)
T COG3386          32 WDPDRGALLWVDILGGRIHRLDPETGKKRVFP-SPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGL  108 (307)
T ss_pred             CcCCCCEEEEEeCCCCeEEEecCCcCceEEEE-CCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCC
Confidence            555555 4445556677888877544333333 223334444444444555543  346666765555432221111 1 


Q ss_pred             ---CeEEEEcCCCceEEEEeCC----------CeEEEEEcC-CCceeeEecCCCcceEEEEECCCCCEEEEEeC-CCcEE
Q 008467          360 ---PTLDVDWRNNVSFATSSTD----------NMIYVCKIG-ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAK  424 (564)
Q Consensus       360 ---~~~~~~~~~~~~~~~~~~d----------~~i~~~~~~-~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~-dg~i~  424 (564)
                         ...+.....+..|..+...          ..-.+|.+. .+..++.+.+|-..-+.++||||++.|..+-. .+.|.
T Consensus       109 ~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~  188 (307)
T COG3386         109 PLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIH  188 (307)
T ss_pred             CcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEE
Confidence               1122222222233222222          011344444 34455555555566789999999987665544 47777


Q ss_pred             EEeCCCCeeeeecccccccEEEEEE-----ccCCCCCCCCCCcEEEEEEeCCC-eEEEEeCCCCeEEEEEeCCCCCEEEE
Q 008467          425 IWNMKQDKYVHDLREHSKEIYTIRW-----SPTGSGTNNPNQQLILASASFDS-TVKLWDVELGKLLYSLNGHREPVYSL  498 (564)
Q Consensus       425 iwd~~~~~~~~~~~~~~~~i~~i~~-----~p~~~~~~~~~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~h~~~i~~~  498 (564)
                      -|++...    ....... ...+.+     .|+|.. ...+..++. ++-.+| .|.+|+.. |+++..+.-....++++
T Consensus       189 r~~~d~~----~g~~~~~-~~~~~~~~~~G~PDG~~-vDadG~lw~-~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~  260 (307)
T COG3386         189 RYDLDPA----TGPIGGR-RGFVDFDEEPGLPDGMA-VDADGNLWV-AAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNP  260 (307)
T ss_pred             EEecCcc----cCccCCc-ceEEEccCCCCCCCceE-EeCCCCEEE-ecccCCceEEEECCC-CcEEEEEECCCCCCccc
Confidence            7766520    0000111 111111     233321 112233333 333333 89999988 88888777655667778


Q ss_pred             EEc-CCCCEEEE
Q 008467          499 AFS-PTGEYLAS  509 (564)
Q Consensus       499 ~~s-pdg~~las  509 (564)
                      +|- |+.+.|..
T Consensus       261 ~FgG~~~~~L~i  272 (307)
T COG3386         261 AFGGPDLNTLYI  272 (307)
T ss_pred             eEeCCCcCEEEE
Confidence            874 44454443

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.92  E-value=0.0037  Score=55.50  Aligned_cols=106  Identities=17%  Similarity=0.245  Sum_probs=71.6

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeC
Q 008467          411 GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG  490 (564)
Q Consensus       411 ~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  490 (564)
                      +.-++.|+.+|.|.+|..........+.........+ --|.+.      ...+..+++.||.||.|++.-++.+.....
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~-~Ip~~~------~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~  142 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDL-GIPNGR------DSSLGCVGAQDGRIRACNIKPNKVLGYVGQ  142 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhccccccee-cccccc------ccceeEEeccCCceeeeccccCceeeeecc
Confidence            3568899999999999876322211111111111111 113332      123788899999999999998888888877


Q ss_pred             CC-CCEEEEEEcCCCCEEEEE--eCCCcEEEEeCCC
Q 008467          491 HR-EPVYSLAFSPTGEYLASG--SLDKSMHIWSLKE  523 (564)
Q Consensus       491 h~-~~i~~~~~spdg~~lasg--s~dg~i~iw~~~~  523 (564)
                      |. .++.....+..+++|+.+  |.|..++.|++..
T Consensus       143 h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  143 HNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            87 677777777778888888  8888888888764

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.85  E-value=0.056  Score=42.70  Aligned_cols=96  Identities=20%  Similarity=0.286  Sum_probs=60.7

Q ss_pred             EECCCC-CEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 008467          223 AWSPAG-SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARI  301 (564)
Q Consensus       223 ~~sp~~-~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~v  301 (564)
                      .|.-+| +-|+.||.|..||+|+=..               .+...     .....|++++-... ..|+.|..+|+|-+
T Consensus         9 d~d~dg~~eLlvGs~D~~IRvf~~~e---------------~~~Ei-----~e~~~v~~L~~~~~-~~F~Y~l~NGTVGv   67 (111)
T PF14783_consen    9 DFDGDGENELLVGSDDFEIRVFKGDE---------------IVAEI-----TETDKVTSLCSLGG-GRFAYALANGTVGV   67 (111)
T ss_pred             ecCCCCcceEEEecCCcEEEEEeCCc---------------EEEEE-----ecccceEEEEEcCC-CEEEEEecCCEEEE
Confidence            344454 5899999999999997321               11111     12456888876665 66899999999999


Q ss_pred             EECCCceeEeecCCCCCEEEEEeCC---CC-CEEEEeeCCCcEE
Q 008467          302 WSTNGDLKCTLSKHKGPIFSLKWNK---KG-DYLLTGSCDKTAI  341 (564)
Q Consensus       302 w~~~~~~~~~~~~h~~~V~~l~~~~---~~-~~l~s~s~D~~v~  341 (564)
                      |+....+-..-..|.  ++++.+..   +| ..|++|=.+|.|-
T Consensus        68 Y~~~~RlWRiKSK~~--~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   68 YDRSQRLWRIKSKNQ--VTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             EeCcceeeeeccCCC--eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            986544433323333  55555433   23 3578887777653

>PRK13684 Ycf48-like protein; Provisional

Probab=96.84  E-value=0.58  Score=46.21  Aligned_cols=148  Identities=15%  Similarity=0.192  Sum_probs=81.0

Q ss_pred             CcceEEEEECCCCCEEEEEeCCCcEE-EEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEE
Q 008467          399 QGEVNCVKWDPTGSLLASCSDDVTAK-IWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW  477 (564)
Q Consensus       399 ~~~i~~v~~~~~~~~las~s~dg~i~-iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iw  477 (564)
                      .+.+.++.+.|++.+++++. .|.+. .++-...........-...++++.+.|++.         +++. +..|.+++=
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~---------~~~v-g~~G~~~~~  240 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGN---------LWML-ARGGQIRFN  240 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCC---------EEEE-ecCCEEEEc
Confidence            45688899999987776554 45443 222221111111223345678888887764         3333 456766542


Q ss_pred             eCCCCeEEEEEeC----CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec----CCCEEEEEEccCCCEEE
Q 008467          478 DVELGKLLYSLNG----HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG----NGGIFEVCWNKEGDKIA  549 (564)
Q Consensus       478 d~~~~~~~~~~~~----h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~----~~~i~~~~w~~~g~~la  549 (564)
                      ....|..-.....    -...+.+++|.|++..+++| .+|.|. .....|+--.....    ....+.+.|..+++.++
T Consensus       241 s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (334)
T PRK13684        241 DPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV  318 (334)
T ss_pred             cCCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE
Confidence            3333332221111    12357889999988866654 566553 44444443222211    12478888888888877


Q ss_pred             EEEcCCcEEEE
Q 008467          550 ACFANHTVCVL  560 (564)
Q Consensus       550 ~~~~~~~v~v~  560 (564)
                      +| ..|.|..+
T Consensus       319 ~G-~~G~il~~  328 (334)
T PRK13684        319 LG-QRGVLLRY  328 (334)
T ss_pred             EC-CCceEEEe
Confidence            77 55666544

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.79  E-value=0.14  Score=51.36  Aligned_cols=45  Identities=20%  Similarity=0.331  Sum_probs=37.4

Q ss_pred             EeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec
Q 008467          488 LNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG  532 (564)
Q Consensus       488 ~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~  532 (564)
                      +......+.+|+.+|++++.|+...=|+|.++|+.++.+++.|++
T Consensus       303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKG  347 (415)
T PF14655_consen  303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKG  347 (415)
T ss_pred             eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhcc
Confidence            444455689999999999988887779999999999988877765

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.75  E-value=0.15  Score=48.05  Aligned_cols=144  Identities=15%  Similarity=0.187  Sum_probs=83.9

Q ss_pred             ceEEEEECCCCCEEEEEe--C-CCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEE
Q 008467          401 EVNCVKWDPTGSLLASCS--D-DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW  477 (564)
Q Consensus       401 ~i~~v~~~~~~~~las~s--~-dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iw  477 (564)
                      .+.+.+++++++.+|...  . ...+.++..  +.....+. ....+..-.|.+++.         +.+....+...+++
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~---------~W~v~~~~~~~~~~   92 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGW---------VWTVDDGSGGVRVV   92 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCC---------EEEEEcCCCceEEE
Confidence            678899999999877665  2 234444443  33222221 223566667777753         34444455566666


Q ss_pred             e-CCCCeEE-EEEeC--CCCCEEEEEEcCCCCEEEEEe---CCCcEEEEeCC---CC---eEEEEE----ecCCCEEEEE
Q 008467          478 D-VELGKLL-YSLNG--HREPVYSLAFSPTGEYLASGS---LDKSMHIWSLK---EG---KIVKTY----TGNGGIFEVC  540 (564)
Q Consensus       478 d-~~~~~~~-~~~~~--h~~~i~~~~~spdg~~lasgs---~dg~i~iw~~~---~~---~~~~~~----~~~~~i~~~~  540 (564)
                      . ...+... ..+..  -...|..+.+||||..+|.-.   .++.|.|=-+.   .|   .+....    .....+.+++
T Consensus        93 ~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~  172 (253)
T PF10647_consen   93 RDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVA  172 (253)
T ss_pred             EecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeee
Confidence            3 3333321 12211  112899999999999887654   35677776543   23   111111    1134688999


Q ss_pred             EccCCCEEEEEEcCCc
Q 008467          541 WNKEGDKIAACFANHT  556 (564)
Q Consensus       541 w~~~g~~la~~~~~~~  556 (564)
                      |.+++..++.+...+.
T Consensus       173 W~~~~~L~V~~~~~~~  188 (253)
T PF10647_consen  173 WSDDSTLVVLGRSAGG  188 (253)
T ss_pred             ecCCCEEEEEeCCCCC
Confidence            9999998887766544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.71  E-value=0.62  Score=44.82  Aligned_cols=266  Identities=15%  Similarity=0.210  Sum_probs=120.4

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEe---ecCC---CCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCc
Q 008467          275 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCT---LSKH---KGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE  348 (564)
Q Consensus       275 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~---~~~h---~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~  348 (564)
                      ..++..|.|..+..-+++|. .|.| +-..+|...-.   ....   .-...++.|..+ ..+++ +..+.+ +.....+
T Consensus        16 ~~~l~dV~F~d~~~G~~VG~-~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~iv-G~~g~l-l~T~DgG   90 (302)
T PF14870_consen   16 DKPLLDVAFVDPNHGWAVGA-YGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIV-GEPGLL-LHTTDGG   90 (302)
T ss_dssp             SS-EEEEEESSSS-EEEEET-TTEE-EEESSTTSS-EE-----S-----EEEEEEEETT-EEEEE-EETTEE-EEESSTT
T ss_pred             CCceEEEEEecCCEEEEEec-CCEE-EEECCCCccccccccCCCccceeeEEEEEecCC-ceEEE-cCCceE-EEecCCC
Confidence            45789999996666666655 4543 22334321111   1111   123566777543 33444 444433 3333333


Q ss_pred             -ceeEEEee--cccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEE
Q 008467          349 -EWKQQFEF--HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI  425 (564)
Q Consensus       349 -~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~i  425 (564)
                       .+......  ..+....+...++......+..+.|+.-.-....=.....+-.+.+..+.-++||++++.++.-....-
T Consensus        91 ~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s  170 (302)
T PF14870_consen   91 KTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSS  170 (302)
T ss_dssp             SS-EE----TT-SS-EEEEEEEETTEEEEEETT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEE
T ss_pred             CCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEE
Confidence             23322110  112222232222333333344455443222111111122334467888888999999888876666678


Q ss_pred             EeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeC-CCCeEEEE----EeCCCCCEEEEEE
Q 008467          426 WNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV-ELGKLLYS----LNGHREPVYSLAF  500 (564)
Q Consensus       426 wd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~-~~~~~~~~----~~~h~~~i~~~~~  500 (564)
                      ||.-.......-+.-...|..+.|.|++.        +++  ....|.|++=+. .....-..    +..-.-.+.+++|
T Consensus       171 ~~~G~~~w~~~~r~~~~riq~~gf~~~~~--------lw~--~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~  240 (302)
T PF14870_consen  171 WDPGQTTWQPHNRNSSRRIQSMGFSPDGN--------LWM--LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAY  240 (302)
T ss_dssp             E-TT-SS-EEEE--SSS-EEEEEE-TTS---------EEE--EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEE
T ss_pred             ecCCCccceEEccCccceehhceecCCCC--------EEE--EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEe
Confidence            88654322222334567899999999864        233  337788888772 22222111    1112234899999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec----CCCEEEEEEccCCCEEEEEEcCCcEE
Q 008467          501 SPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG----NGGIFEVCWNKEGDKIAACFANHTVC  558 (564)
Q Consensus       501 spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~----~~~i~~~~w~~~g~~la~~~~~~~v~  558 (564)
                      .+++...|+|+.. .+ +.....|+-=+....    ....+.+.|..+.+-++.| .+|.+-
T Consensus       241 ~~~~~~wa~gg~G-~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G~ll  299 (302)
T PF14870_consen  241 RPPNEIWAVGGSG-TL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-QDGVLL  299 (302)
T ss_dssp             SSSS-EEEEESTT--E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEE
T ss_pred             cCCCCEEEEeCCc-cE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC-CCcEEE
Confidence            9998888877654 33 445555654333322    3457899998777777776 666553

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.46  E-value=1.8  Score=47.11  Aligned_cols=320  Identities=15%  Similarity=0.203  Sum_probs=163.8

Q ss_pred             cceEEEEECCCC---C---EEEEEECCCcEEEEeC-CCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE
Q 008467          217 SEVCACAWSPAG---S---LLASGSGDSTARIWTI-ADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL  289 (564)
Q Consensus       217 ~~V~~~~~sp~~---~---~lasgs~D~~i~iW~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~  289 (564)
                      .+|.|+.++|-|   +   ++|.|..+..+.+-.. ++...           .......+..  ....|....+-.|..+
T Consensus       531 ~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~-----------~~~~~l~~~~--iPRSIl~~~~e~d~~y  597 (1096)
T KOG1897|consen  531 YEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLIL-----------ITHEQLSGEI--IPRSILLTTFEGDIHY  597 (1096)
T ss_pred             ceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcce-----------eeeeccCCCc--cchheeeEEeeccceE
Confidence            679999999852   2   7888887666554432 22211           0111111111  1244667778888899


Q ss_pred             EEEEeCCCeEEEEECC---CceeEe--ecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEE
Q 008467          290 LATGSYDGQARIWSTN---GDLKCT--LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV  364 (564)
Q Consensus       290 l~sg~~dg~i~vw~~~---~~~~~~--~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~  364 (564)
                      |.++..||.+..+..+   |.+...  ..--+.|+.=-.|+..+..-+-+.+|+-..+|.-+..-+...+...  .+..+
T Consensus       598 LlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~k--ev~~~  675 (1096)
T KOG1897|consen  598 LLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLK--EVNHM  675 (1096)
T ss_pred             EEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchH--Hhhhh
Confidence            9999999999877543   221111  1112345555567666655555556777777754332222211111  11112


Q ss_pred             EcC-CC--ceEEEEeCCCeEEEEEcCCCc--eeeEecCCCcceEEEEECCCCCEEEEEeCC--------------CcEEE
Q 008467          365 DWR-NN--VSFATSSTDNMIYVCKIGENR--PIKTFAGHQGEVNCVKWDPTGSLLASCSDD--------------VTAKI  425 (564)
Q Consensus       365 ~~~-~~--~~~~~~~~d~~i~~~~~~~~~--~~~~~~~h~~~i~~v~~~~~~~~las~s~d--------------g~i~i  425 (564)
                      +.. ++  ...+.....+.+.+..++.-+  .+++..-| .....+++.+...++++.+.-              ..+++
T Consensus       676 c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl~-~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~v  754 (1096)
T KOG1897|consen  676 CPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPLG-ESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRV  754 (1096)
T ss_pred             cccccccCCceEEEecCCceEEEEecchhhcceeeecCC-CChhheEecccceEEEEEecccccchhhcCCcceEEEEEE
Confidence            211 11  112333344555555554322  22232211 234456666644444444331              13566


Q ss_pred             EeCCCCeeeeeccc-ccc---cEEEEEEccCCCCCCCCCCcEEEEEEe----------CCCeEEEEeCCCCeEEEEEeC-
Q 008467          426 WNMKQDKYVHDLRE-HSK---EIYTIRWSPTGSGTNNPNQQLILASAS----------FDSTVKLWDVELGKLLYSLNG-  490 (564)
Q Consensus       426 wd~~~~~~~~~~~~-~~~---~i~~i~~~p~~~~~~~~~~~~~l~s~s----------~dg~i~iwd~~~~~~~~~~~~-  490 (564)
                      +|-++-+.++.... ...   .|.+..|..+      |+  .+++.|.          ..|.|.|+....++.+..+.. 
T Consensus       755 lD~nTf~vl~~hef~~~E~~~Si~s~~~~~d------~~--t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~  826 (1096)
T KOG1897|consen  755 LDQNTFEVLSSHEFERNETALSIISCKFTDD------PN--TYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAET  826 (1096)
T ss_pred             ecCCceeEEeeccccccceeeeeeeeeecCC------Cc--eEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeee
Confidence            77666554432211 111   2333334333      11  2344432          135555665544222222211 


Q ss_pred             -CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE-EecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          491 -HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKT-YTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       491 -h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~-~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                       -.+.++++.- -+|++||.  -...|++|++.+.+.++. ......+..+.....|+.+|+|..-+++.+.-+|
T Consensus       827 ~v~Gav~aL~~-fngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~  898 (1096)
T KOG1897|consen  827 VVKGAVYALVE-FNGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYK  898 (1096)
T ss_pred             eeccceeehhh-hCCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEe
Confidence             1244555532 25777764  556799999988754433 3334568888899999999999888888777655

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.45  E-value=0.55  Score=49.87  Aligned_cols=222  Identities=14%  Similarity=0.252  Sum_probs=112.1

Q ss_pred             CCCEEEEEeCCC------eEEEEECCCceeEeecC--CCCCEEEEEeCCCCCEEEEeeCC------CcEEEEECCCccee
Q 008467          286 EGTLLATGSYDG------QARIWSTNGDLKCTLSK--HKGPIFSLKWNKKGDYLLTGSCD------KTAIVWDVKTEEWK  351 (564)
Q Consensus       286 ~g~~l~sg~~dg------~i~vw~~~~~~~~~~~~--h~~~V~~l~~~~~~~~l~s~s~D------~~v~iwd~~~~~~~  351 (564)
                      .+.+++.||.++      .+..+|........+..  +...-.+++.. ++...++|+.|      .++..||..+.+|.
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~  362 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT  362 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence            456677777763      56667765442222111  12223334433 34667788888      36789999999887


Q ss_pred             EEEeeccc-CeEEEEcCCCceEEEEeCCCe-----EEEEEcCCCc--eeeEecCCCcceEEEEECCCCCEEEEEeCCC--
Q 008467          352 QQFEFHSG-PTLDVDWRNNVSFATSSTDNM-----IYVCKIGENR--PIKTFAGHQGEVNCVKWDPTGSLLASCSDDV--  421 (564)
Q Consensus       352 ~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~-----i~~~~~~~~~--~~~~~~~h~~~i~~v~~~~~~~~las~s~dg--  421 (564)
                      ..-..... ....+.-.++..++.++.|+.     +-.||..+++  .+..+.......-.+.  -+|.+.+.|+.++  
T Consensus       363 ~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~--~~g~iYi~GG~~~~~  440 (571)
T KOG4441|consen  363 PVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV--LGGKLYIIGGGDGSS  440 (571)
T ss_pred             ccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEE--ECCEEEEEcCcCCCc
Confidence            64333221 223445556778888888764     4445544432  1111111111121222  2688888888665  


Q ss_pred             ----cEEEEeCCCCeeee--ecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCC-----eEEEEeCCCCeE--EEEE
Q 008467          422 ----TAKIWNMKQDKYVH--DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS-----TVKLWDVELGKL--LYSL  488 (564)
Q Consensus       422 ----~i~iwd~~~~~~~~--~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg-----~i~iwd~~~~~~--~~~~  488 (564)
                          ++..||..+.....  .+........ ++.- +         ..+.+.|+.|+     +|..+|..+.+-  +..+
T Consensus       441 ~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~-~---------~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m  509 (571)
T KOG4441|consen  441 NCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVL-N---------GKIYVVGGFDGTSALSSVERYDPETNQWTMVAPM  509 (571)
T ss_pred             cccceEEEEcCCCCceeecCCcccccccce-EEEE-C---------CEEEEECCccCCCccceEEEEcCCCCceeEcccC
Confidence                45677776654321  1111100001 1110 1         13566677666     367788775542  2222


Q ss_pred             eCCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEeCCC
Q 008467          489 NGHREPVYSLAFSPTGEYLASGSLDK-----SMHIWSLKE  523 (564)
Q Consensus       489 ~~h~~~i~~~~~spdg~~lasgs~dg-----~i~iw~~~~  523 (564)
                      ......+..+..  +++..|+|+.||     +|-.||..+
T Consensus       510 ~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~  547 (571)
T KOG4441|consen  510 TSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPET  547 (571)
T ss_pred             ccccccccEEEE--CCEEEEEecccCccccceeEEcCCCC
Confidence            222232222322  567778888776     355555443

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.38  E-value=0.77  Score=41.98  Aligned_cols=257  Identities=15%  Similarity=0.125  Sum_probs=125.7

Q ss_pred             CEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeeccc-CeEEEE
Q 008467          288 TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG-PTLDVD  365 (564)
Q Consensus       288 ~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-~~~~~~  365 (564)
                      ++++.|+-.+.+..-|.. |.+...- --...|.+-+.- -|++++.|...|.+.+-+.++|+....|..... .+....
T Consensus        24 T~v~igSHs~~~~avd~~sG~~~We~-ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~  101 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNLIWEA-ILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQC  101 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcEEeeh-hhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEE
Confidence            456666666666655543 2222110 001111111111 367899999999999999999976655543221 111112


Q ss_pred             cCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeeeeecccc--cc
Q 008467          366 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDLREH--SK  442 (564)
Q Consensus       366 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~-~~~~las~s~dg~i~iwd~~~~~~~~~~~~~--~~  442 (564)
                      -.+...+..++-|+..+..|......+...+-..+...+-+..| ++.+.+ +...|.+.--..+.. ..+++-.|  .+
T Consensus       102 d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~-a~t~G~vlavt~~~~-~~~~~w~~~~~~  179 (354)
T KOG4649|consen  102 DFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYA-AITAGAVLAVTKNPY-SSTEFWAATRFG  179 (354)
T ss_pred             cCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEE-EeccceEEEEccCCC-CcceehhhhcCC
Confidence            22344566778899999988887777665543333344445555 444433 333343322222211 11112111  12


Q ss_pred             cEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEE-EEEc-CCCCEEEEEeCCCcE----
Q 008467          443 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYS-LAFS-PTGEYLASGSLDKSM----  516 (564)
Q Consensus       443 ~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~-~~~s-pdg~~lasgs~dg~i----  516 (564)
                      +|.+   +|.--     . + .+.-+.-||.+.-+| ..|+.++... ..+||.. -+-| |..+.|..+..+..+    
T Consensus       180 PiF~---splcv-----~-~-sv~i~~VdG~l~~f~-~sG~qvwr~~-t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p  247 (354)
T KOG4649|consen  180 PIFA---SPLCV-----G-S-SVIITTVDGVLTSFD-ESGRQVWRPA-TKGPIFMEPCESRPSCQQISLENENCFCAPLP  247 (354)
T ss_pred             cccc---Cceec-----c-c-eEEEEEeccEEEEEc-CCCcEEEeec-CCCceecccccCCCcceEEEEecCCeEEEecc
Confidence            2211   01000     0 0 233455678887777 5677776554 2334322 1112 444444444444332    


Q ss_pred             ----EEEeCCCCeEEEEEecCCCEEEEEEcc-C---CCEEEEEEcCCcEEEEEe
Q 008467          517 ----HIWSLKEGKIVKTYTGNGGIFEVCWNK-E---GDKIAACFANHTVCVLDF  562 (564)
Q Consensus       517 ----~iw~~~~~~~~~~~~~~~~i~~~~w~~-~---g~~la~~~~~~~v~v~~~  562 (564)
                          .+|..+.|.....|-...  ..++++. .   .+.|+.++.||.+.|+-.
T Consensus       248 ~~ghL~w~~~~g~t~~vy~~p~--l~F~~h~~~~S~~~ll~~~s~dgkv~il~~  299 (354)
T KOG4649|consen  248 IAGHLLWATQSGTTLHVYLSPK--LRFDLHSPGISYPKLLRRSSGDGKVMILMT  299 (354)
T ss_pred             ccceEEEEecCCcEEEEEeCcc--cceeccCCCCcchhhhhhhcCCCcEEEEEe
Confidence                356666665444443211  1122222 1   247778888998888743

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.38  E-value=1.4  Score=45.03  Aligned_cols=239  Identities=15%  Similarity=0.179  Sum_probs=119.1

Q ss_pred             eEEEEECCCCCEEEEE-eCCC----eEEEEECCCcee-E-eecCCCCCEEEEEeCCCCCEEEEeeCCC-----------c
Q 008467          278 VTTLDWNGEGTLLATG-SYDG----QARIWSTNGDLK-C-TLSKHKGPIFSLKWNKKGDYLLTGSCDK-----------T  339 (564)
Q Consensus       278 V~~l~~s~~g~~l~sg-~~dg----~i~vw~~~~~~~-~-~~~~h~~~V~~l~~~~~~~~l~s~s~D~-----------~  339 (564)
                      +....+||+|+++|.+ +..|    .++++|+..... . .+....  -..+.|.++++.|+-...|.           .
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc--cceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            4467899999998876 3334    589999865422 1 222111  12399999998876655433           3


Q ss_pred             EEEEECCCccee--EEEeecccC--eEEEEcCCCce--EEEEe--CC-CeEEEEEcCCC-----ceeeEecCCCcceEEE
Q 008467          340 AIVWDVKTEEWK--QQFEFHSGP--TLDVDWRNNVS--FATSS--TD-NMIYVCKIGEN-----RPIKTFAGHQGEVNCV  405 (564)
Q Consensus       340 v~iwd~~~~~~~--~~~~~~~~~--~~~~~~~~~~~--~~~~~--~d-~~i~~~~~~~~-----~~~~~~~~h~~~i~~v  405 (564)
                      |+.|.+.+..-.  ..|+.....  ...+....+..  |+.+.  .+ ..+++.+....     .+........+....+
T Consensus       204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v  283 (414)
T PF02897_consen  204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV  283 (414)
T ss_dssp             EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred             EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence            788887665433  334443333  34555544433  33332  23 45778887764     2222222222333333


Q ss_pred             EECCCCCEEEEEeC---CCcEEEEeCCCCee---eeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCC--eEEEE
Q 008467          406 KWDPTGSLLASCSD---DVTAKIWNMKQDKY---VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS--TVKLW  477 (564)
Q Consensus       406 ~~~~~~~~las~s~---dg~i~iwd~~~~~~---~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg--~i~iw  477 (564)
                      ... .+.+++....   .+.|.-.++.....   ...+..+...+.-..+...+        ..++++-..++  .|+++
T Consensus       284 ~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~--------~~Lvl~~~~~~~~~l~v~  354 (414)
T PF02897_consen  284 DHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFK--------DYLVLSYRENGSSRLRVY  354 (414)
T ss_dssp             EEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEET--------TEEEEEEEETTEEEEEEE
T ss_pred             Ecc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEEC--------CEEEEEEEECCccEEEEE
Confidence            333 3334433322   34555556554432   22334444422222222222        13555555555  47888


Q ss_pred             eCCCCeEEEEEeC-CCCCEEEEEEcCCCCEEE--EEeC--CCcEEEEeCCCCeEE
Q 008467          478 DVELGKLLYSLNG-HREPVYSLAFSPTGEYLA--SGSL--DKSMHIWSLKEGKIV  527 (564)
Q Consensus       478 d~~~~~~~~~~~~-h~~~i~~~~~spdg~~la--sgs~--dg~i~iw~~~~~~~~  527 (564)
                      ++..+.....+.. -.+.|..+...+++..+.  ..|.  -+++.-||+.++++.
T Consensus       355 ~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~  409 (414)
T PF02897_consen  355 DLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT  409 (414)
T ss_dssp             ETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred             ECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence            8884444444432 233466666666665432  2333  367888899888754

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.37  E-value=0.012  Score=63.33  Aligned_cols=93  Identities=23%  Similarity=0.287  Sum_probs=71.3

Q ss_pred             EEEEEeCCCeEEEEeCCCCeE-EEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC----CCEEE
Q 008467          464 ILASASFDSTVKLWDVELGKL-LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN----GGIFE  538 (564)
Q Consensus       464 ~l~s~s~dg~i~iwd~~~~~~-~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~----~~i~~  538 (564)
                      .++.|+.-|.|-..|+...-. ...-..-..||++++|+.||+.++.|=.+|.|.+||...+++.+.++.+    .++..
T Consensus       101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~  180 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIF  180 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEE
Confidence            467788888888888763211 1111223478999999999999999999999999999999988887653    35778


Q ss_pred             EEEccCCCEEEEEEcCCc
Q 008467          539 VCWNKEGDKIAACFANHT  556 (564)
Q Consensus       539 ~~w~~~g~~la~~~~~~~  556 (564)
                      +-|..++..+.++...|.
T Consensus       181 v~~t~~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  181 VGRTSQNSKLLTSDTGGS  198 (1206)
T ss_pred             EEEeCCCcEEEEccCCCc
Confidence            889888887777777765

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.36  E-value=0.014  Score=38.42  Aligned_cols=33  Identities=24%  Similarity=0.436  Sum_probs=29.7

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEECCCce
Q 008467          276 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL  308 (564)
Q Consensus       276 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~  308 (564)
                      ..|.+++|+|...+||.|+.+|.|.++..+++.
T Consensus        12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qr   44 (47)
T PF12894_consen   12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQR   44 (47)
T ss_pred             CcEEEEEECCCCCEEEEEECCCeEEEEECCCcC
Confidence            569999999999999999999999999986653

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.33  E-value=0.015  Score=38.33  Aligned_cols=34  Identities=21%  Similarity=0.352  Sum_probs=29.8

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE
Q 008467          492 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI  526 (564)
Q Consensus       492 ~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~  526 (564)
                      ...|..++|+|...+||.|+.+|.|.+|.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            356999999999999999999999999998 5543

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.27  E-value=0.074  Score=53.17  Aligned_cols=148  Identities=18%  Similarity=0.212  Sum_probs=95.0

Q ss_pred             CCCE-EEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-e-EEE
Q 008467          410 TGSL-LASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-K-LLY  486 (564)
Q Consensus       410 ~~~~-las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~-~~~  486 (564)
                      +.++ |.++..-..++--|+..++.+.+...+.. |.-+.+.|+.........+ .| .|-.|..|.=||.+.. . .+.
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~-Tl-vGLs~n~vfriDpRv~~~~kl~  420 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQ-TL-VGLSDNSVFRIDPRVQGKNKLA  420 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccc-cE-EeecCCceEEecccccCcceee
Confidence            3444 34555556777789999999988887766 7777778876543322222 22 3666888999998732 2 222


Q ss_pred             EEeCCC----CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE-EEEec-CCCEEEEEEccCCCEEEEEEcCCcEEEE
Q 008467          487 SLNGHR----EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV-KTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVL  560 (564)
Q Consensus       487 ~~~~h~----~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~-~~~~~-~~~i~~~~w~~~g~~la~~~~~~~v~v~  560 (564)
                      ...+|.    ....|.+-..+ -+||+||.+|.|++||. .+..- ..+++ ..+|..+.-+.+|++|.+.+. ..+.++
T Consensus       421 ~~q~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-tyLlLi  497 (644)
T KOG2395|consen  421 VVQSKQYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCK-TYLLLI  497 (644)
T ss_pred             eeeccccccccccceeeecCC-ceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecc-cEEEEE
Confidence            223332    22344444434 47889999999999997 44333 33444 346899999999998776644 467777


Q ss_pred             Eee
Q 008467          561 DFR  563 (564)
Q Consensus       561 ~~~  563 (564)
                      +.+
T Consensus       498 ~t~  500 (644)
T KOG2395|consen  498 DTL  500 (644)
T ss_pred             EEe
Confidence            654

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.19  E-value=1.2  Score=42.48  Aligned_cols=225  Identities=15%  Similarity=0.209  Sum_probs=113.4

Q ss_pred             CCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC
Q 008467          227 AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG  306 (564)
Q Consensus       227 ~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~  306 (564)
                      .++.|+.|..+| +.++++.....       +..  .         .+...|+.+..-++-+.|++-+ |+.+++++...
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~-------~~~--i---------~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~   65 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSK-------PTR--I---------LKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDS   65 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCcc-------cee--E---------eecceEEEEEEecccCEEEEEc-CCccEEEEchh
Confidence            467899999998 88888722110       000  0         0122388888888766665544 59999998642


Q ss_pred             ceeEe---------------ecCCCCCEEEEE--eCCCCCEEEEeeCCCcEEEEECCCc-----ceeEEEeecccCeEEE
Q 008467          307 DLKCT---------------LSKHKGPIFSLK--WNKKGDYLLTGSCDKTAIVWDVKTE-----EWKQQFEFHSGPTLDV  364 (564)
Q Consensus       307 ~~~~~---------------~~~h~~~V~~l~--~~~~~~~l~s~s~D~~v~iwd~~~~-----~~~~~~~~~~~~~~~~  364 (564)
                      -....               .......+...+  -...+...+.....+++.+|.....     ...+.+... ..+..+
T Consensus        66 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i  144 (275)
T PF00780_consen   66 LEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-DPPSSI  144 (275)
T ss_pred             hccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-CCcEEE
Confidence            11110               111222343333  2234455566666779988877542     223333332 556778


Q ss_pred             EcCCCceEEEEeCCCeEEEEEcCCCceeeEecCC------------CcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCe
Q 008467          365 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGH------------QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK  432 (564)
Q Consensus       365 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h------------~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~  432 (564)
                      .|.++..++..  .....+.++.++.+...+...            ..++..+..+ ++.+|++ .++ .-.+-|. .++
T Consensus       145 ~~~~~~i~v~~--~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~-~~~-~g~fv~~-~G~  218 (275)
T PF00780_consen  145 AFLGNKICVGT--SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLC-YDN-IGVFVNK-NGE  218 (275)
T ss_pred             EEeCCEEEEEe--CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEE-ecc-eEEEEcC-CCC
Confidence            88755444333  333556666654443332111            1233334433 3455543 222 2222232 222


Q ss_pred             eee--ecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCC
Q 008467          433 YVH--DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH  491 (564)
Q Consensus       433 ~~~--~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h  491 (564)
                      ..+  .+.-.. ...++.+..          . +|+..+ ++.|.||++.+++++.++...
T Consensus       219 ~~r~~~i~W~~-~p~~~~~~~----------p-yli~~~-~~~iEV~~~~~~~lvQ~i~~~  266 (275)
T PF00780_consen  219 PSRKSTIQWSS-APQSVAYSS----------P-YLIAFS-SNSIEVRSLETGELVQTIPLP  266 (275)
T ss_pred             cCcccEEEcCC-chhEEEEEC----------C-EEEEEC-CCEEEEEECcCCcEEEEEECC
Confidence            221  111111 122233221          1 444443 466999999999998888743

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PHA02713 hypothetical protein; Provisional

Probab=96.16  E-value=0.48  Score=50.41  Aligned_cols=184  Identities=3%  Similarity=0.081  Sum_probs=89.8

Q ss_pred             CCCEEEEeeCC------CcEEEEECCCcceeEEEeeccc-CeEEEEcCCCceEEEEeCCC-----eEEEEEcCCCc--ee
Q 008467          327 KGDYLLTGSCD------KTAIVWDVKTEEWKQQFEFHSG-PTLDVDWRNNVSFATSSTDN-----MIYVCKIGENR--PI  392 (564)
Q Consensus       327 ~~~~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~-----~i~~~~~~~~~--~~  392 (564)
                      ++..++.|+.+      .++..||+.+..|...-..... .-..+.-.++..++.|+.++     .+..|+..++.  .+
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~  382 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML  382 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence            44555666643      3577889888877543222111 11233334566777776543     36667765432  11


Q ss_pred             eEecCCCcceEEEEECCCCCEEEEEeCCC-----------------------cEEEEeCCCCeeee--ecccccccEEEE
Q 008467          393 KTFAGHQGEVNCVKWDPTGSLLASCSDDV-----------------------TAKIWNMKQDKYVH--DLREHSKEIYTI  447 (564)
Q Consensus       393 ~~~~~h~~~i~~v~~~~~~~~las~s~dg-----------------------~i~iwd~~~~~~~~--~~~~~~~~i~~i  447 (564)
                      ..+.........+.+  ++++.+.|+.++                       ++..||..+.+...  .+.........+
T Consensus       383 ~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~  460 (557)
T PHA02713        383 PDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV  460 (557)
T ss_pred             CCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEE
Confidence            111111111112222  577778787653                       35567765544321  111000000000


Q ss_pred             EEccCCCCCCCCCCcEEEEEEeCC------CeEEEEeCCC-C--eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCC--cE
Q 008467          448 RWSPTGSGTNNPNQQLILASASFD------STVKLWDVEL-G--KLLYSLNGHREPVYSLAFSPTGEYLASGSLDK--SM  516 (564)
Q Consensus       448 ~~~p~~~~~~~~~~~~~l~s~s~d------g~i~iwd~~~-~--~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg--~i  516 (564)
                      .          -++. +.+.|+.+      ..|..||..+ .  ..+..+.........+++  +|+..++||.||  .+
T Consensus       461 ~----------~~~~-IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~  527 (557)
T PHA02713        461 S----------HKDD-IYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQ  527 (557)
T ss_pred             E----------ECCE-EEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeeh
Confidence            1          1122 33445543      2467788876 3  233334333333333444  788889999888  67


Q ss_pred             EEEeCCCCe
Q 008467          517 HIWSLKEGK  525 (564)
Q Consensus       517 ~iw~~~~~~  525 (564)
                      ..||..+.+
T Consensus       528 e~yd~~~~~  536 (557)
T PHA02713        528 DTFNVYTYE  536 (557)
T ss_pred             hhcCccccc
Confidence            777776554

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.13  E-value=0.65  Score=45.66  Aligned_cols=128  Identities=16%  Similarity=0.166  Sum_probs=79.5

Q ss_pred             CcEEEEeCCCC----eeeeec--ccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-EEEEEe-CCC
Q 008467          421 VTAKIWNMKQD----KYVHDL--REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-LLYSLN-GHR  492 (564)
Q Consensus       421 g~i~iwd~~~~----~~~~~~--~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~-~h~  492 (564)
                      |.|.++++...    ..+..+  ....++|++++-- .+          .|+.+ ..+.|.+|++...+ .+.... ...
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~----------~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~  129 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG----------RLVVA-VGNKLYVYDLDNSKTLLKKAFYDSP  129 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT----------EEEEE-ETTEEEEEEEETTSSEEEEEEE-BS
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC----------EEEEe-ecCEEEEEEccCcccchhhheecce
Confidence            88999998874    122111  2346788888754 22          23333 35899999998777 433222 122


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC--CeEEEEEec--CCCEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467          493 EPVYSLAFSPTGEYLASGSLDKSMHIWSLKE--GKIVKTYTG--NGGIFEVCWNKEGDKIAACFANHTVCVLDF  562 (564)
Q Consensus       493 ~~i~~~~~spdg~~lasgs~dg~i~iw~~~~--~~~~~~~~~--~~~i~~~~w~~~g~~la~~~~~~~v~v~~~  562 (564)
                      ..+.++...  +.+|+.|.....|.++....  .++...-..  ...++++++-++++.++++..+|.+.++..
T Consensus       130 ~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~  201 (321)
T PF03178_consen  130 FYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRY  201 (321)
T ss_dssp             SSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE
T ss_pred             EEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEE
Confidence            355665544  66999999888888885543  223322222  334788888877789999999999998864

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.08  E-value=1.9  Score=47.27  Aligned_cols=158  Identities=15%  Similarity=0.263  Sum_probs=87.4

Q ss_pred             eEEEEeCCCeEEEEEcCCCceeeEecCCCcceE-------------EEEECC--CCCEEEEEeC----------CCcEEE
Q 008467          371 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVN-------------CVKWDP--TGSLLASCSD----------DVTAKI  425 (564)
Q Consensus       371 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~-------------~v~~~~--~~~~las~s~----------dg~i~i  425 (564)
                      .++.++.|+.++-.|..+++.+-.|. ..+.|.             .+.-.|  .+..++.|+.          +|.|+-
T Consensus       262 rV~~~T~Dg~LiALDA~TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A  340 (764)
T TIGR03074       262 RIILPTSDARLIALDADTGKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA  340 (764)
T ss_pred             EEEEecCCCeEEEEECCCCCEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence            56667778999989988888876653 222221             011111  1234555542          688999


Q ss_pred             EeCCCCeeeeecccc---------cccEEE-----------------EEEccCCCCCCCC-CCcEEEEEEeCCCeEEEEe
Q 008467          426 WNMKQDKYVHDLREH---------SKEIYT-----------------IRWSPTGSGTNNP-NQQLILASASFDSTVKLWD  478 (564)
Q Consensus       426 wd~~~~~~~~~~~~~---------~~~i~~-----------------i~~~p~~~~~~~~-~~~~~l~s~s~dg~i~iwd  478 (564)
                      +|.++++.+-.+..-         .+..+.                 +.+-|.|...... .........-..+.|.-.|
T Consensus       341 ~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD  420 (764)
T TIGR03074       341 FDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALD  420 (764)
T ss_pred             EECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEe
Confidence            999999887654311         011111                 1111211110000 0000000012345677789


Q ss_pred             CCCCeEEEEEeC-CC---------CCEEEEEEcC-CCC---EEEEEeCCCcEEEEeCCCCeEEEEE
Q 008467          479 VELGKLLYSLNG-HR---------EPVYSLAFSP-TGE---YLASGSLDKSMHIWSLKEGKIVKTY  530 (564)
Q Consensus       479 ~~~~~~~~~~~~-h~---------~~i~~~~~sp-dg~---~lasgs~dg~i~iw~~~~~~~~~~~  530 (564)
                      +++|+.+..+.. |.         .++ =+.+.- +|+   .++.++.+|.++++|.++|+.+...
T Consensus       421 ~~TGk~~W~~Q~~~hD~WD~D~~~~p~-L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~  485 (764)
T TIGR03074       421 ATTGKERWVFQTVHHDLWDMDVPAQPS-LVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV  485 (764)
T ss_pred             CCCCceEEEecccCCccccccccCCce-EEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence            999999887754 21         122 122322 664   7889999999999999999987654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=96.04  E-value=0.0043  Score=65.24  Aligned_cols=124  Identities=12%  Similarity=0.172  Sum_probs=69.7

Q ss_pred             eEccCCccceEEEEECCC-CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC---
Q 008467          210 TILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG---  285 (564)
Q Consensus       210 ~~l~~h~~~V~~~~~sp~-~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~---  285 (564)
                      .+++|-.++|-.++|-.. -..++  -.-|...+|++.-  ..+..+    ..+.+. ..   .+...++.-+.|.|   
T Consensus       126 ~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~--l~G~iq----~~l~v~-~~---~p~gs~~~~V~wcp~~~  193 (1283)
T KOG1916|consen  126 ELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDV--LQGEIQ----PQLEVT-PI---TPYGSDPQLVSWCPIAV  193 (1283)
T ss_pred             HHHhcCCCCcccccccccCChHHH--HHhhhhheeehHh--hccccc----cceEEe-ec---CcCCCCcceeeeccccc
Confidence            455677777777777431 11111  2235678898752  111111    111111 11   12233445566665   


Q ss_pred             CCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEE-----------eCCCCCEEEEeeCCCcEEEEEC
Q 008467          286 EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLK-----------WNKKGDYLLTGSCDKTAIVWDV  345 (564)
Q Consensus       286 ~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~-----------~~~~~~~l~s~s~D~~v~iwd~  345 (564)
                      +.-++..+-.+|.+++...+......+.+|...++.++           .+|||+.|+.++.||.++.|.+
T Consensus       194 ~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  194 NKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI  264 (1283)
T ss_pred             ccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence            55667777778899887766554455666766555444           4677777777777877777754

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.02  E-value=1.3  Score=41.23  Aligned_cols=179  Identities=14%  Similarity=0.141  Sum_probs=108.5

Q ss_pred             EEEEEeCCCCCEEEEeeCCC--cEEEEECCCcceeEEEeecccC-eEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEe
Q 008467          319 IFSLKWNKKGDYLLTGSCDK--TAIVWDVKTEEWKQQFEFHSGP-TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF  395 (564)
Q Consensus       319 V~~l~~~~~~~~l~s~s~D~--~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~  395 (564)
                      .-++.|..+|..+-+.+.-|  .|+.+|+.+++..........- .-.+...++..+...=.++..++||..+-+++.+|
T Consensus        47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~  126 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTF  126 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred             CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEE
Confidence            34677877787777777766  6999999999887665443221 11223334555555556777888999888888777


Q ss_pred             cCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccc--c---ccEEEEEEccCCCCCCCCCCcEEEEEEeC
Q 008467          396 AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH--S---KEIYTIRWSPTGSGTNNPNQQLILASASF  470 (564)
Q Consensus       396 ~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~--~---~~i~~i~~~p~~~~~~~~~~~~~l~s~s~  470 (564)
                      .- .++=..++  .|++.|+.......+.++|..+.+....+...  .   ..+.-+.|. +|         .+.|-.=.
T Consensus       127 ~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G---------~IyANVW~  193 (264)
T PF05096_consen  127 PY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NG---------KIYANVWQ  193 (264)
T ss_dssp             E--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TT---------EEEEEETT
T ss_pred             ec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cC---------EEEEEeCC
Confidence            52 34555666  35666666655678999998876665554322  1   233445554 22         25555556


Q ss_pred             CCeEEEEeCCCCeEEEEEeC------------C---CCCEEEEEEcCCCCE-EEEE
Q 008467          471 DSTVKLWDVELGKLLYSLNG------------H---REPVYSLAFSPTGEY-LASG  510 (564)
Q Consensus       471 dg~i~iwd~~~~~~~~~~~~------------h---~~~i~~~~~spdg~~-lasg  510 (564)
                      ...|...|..+|+++..+.-            +   ..-.+.|||.|.... ++||
T Consensus       194 td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  194 TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            67788889999998876531            1   234788999887654 4555

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.94  E-value=0.45  Score=47.73  Aligned_cols=143  Identities=18%  Similarity=0.179  Sum_probs=75.1

Q ss_pred             ceEEEEECCCCCEEEEEe-----------CCC-cEEEEeCCC--Cee--eeecccccccEEEEEEccCCCCCCCCCCcEE
Q 008467          401 EVNCVKWDPTGSLLASCS-----------DDV-TAKIWNMKQ--DKY--VHDLREHSKEIYTIRWSPTGSGTNNPNQQLI  464 (564)
Q Consensus       401 ~i~~v~~~~~~~~las~s-----------~dg-~i~iwd~~~--~~~--~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~  464 (564)
                      ....++|.++|+++++..           ..+ .|.+++-..  ++.  ...+.........+++.+++          +
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G----------l   84 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG----------V   84 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC----------E
Confidence            345788999998877653           223 666665432  211  12222222233556666554          2


Q ss_pred             EEEEeCCCeEEEEeCCC-------CeEEEE-EeC----CCCCEEEEEEcCCCCEEEEEeCC-------------------
Q 008467          465 LASASFDSTVKLWDVEL-------GKLLYS-LNG----HREPVYSLAFSPTGEYLASGSLD-------------------  513 (564)
Q Consensus       465 l~s~s~dg~i~iwd~~~-------~~~~~~-~~~----h~~~i~~~~~spdg~~lasgs~d-------------------  513 (564)
                      ++ ++.....++.|...       .+.+.. +..    +......++|.|||.+.++-+..                   
T Consensus        85 yV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~  163 (367)
T TIGR02604        85 YV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLG  163 (367)
T ss_pred             EE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccC
Confidence            33 33333333445431       122222 222    12346789999999877754421                   


Q ss_pred             CcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcC
Q 008467          514 KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN  554 (564)
Q Consensus       514 g~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~  554 (564)
                      |.|.-++..++++...-.+......++|+++|+.+++-..+
T Consensus       164 g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       164 GGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             ceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEccCC
Confidence            44555555554433222233346789999999987765433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.86  E-value=0.42  Score=42.96  Aligned_cols=138  Identities=12%  Similarity=0.211  Sum_probs=86.2

Q ss_pred             EEEECCCCCEEEEEeCC---------CeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEE-EeeCCCcEEEEE--CCC
Q 008467          280 TLDWNGEGTLLATGSYD---------GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWD--VKT  347 (564)
Q Consensus       280 ~l~~s~~g~~l~sg~~d---------g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd--~~~  347 (564)
                      .-..+|+|++++-.-.|         |.++.|-..++....... -+--.+++|+.+.+.+. +-+.+-+|.-||  ..+
T Consensus       113 DgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~-v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~t  191 (310)
T KOG4499|consen  113 DGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNC-VGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPT  191 (310)
T ss_pred             cCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehh-ccCCccccccccCcEEEEEccCceEEeeeecCCCc
Confidence            33457899885433222         456666555444333221 12225678887766554 455666777777  555


Q ss_pred             cceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEe
Q 008467          348 EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN  427 (564)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd  427 (564)
                      |....                           .-.+++++..+|...+.     -..++.+.+|++.+++-.-++|...|
T Consensus       192 G~~sn---------------------------r~~i~dlrk~~~~e~~~-----PDGm~ID~eG~L~Va~~ng~~V~~~d  239 (310)
T KOG4499|consen  192 GDLSN---------------------------RKVIFDLRKSQPFESLE-----PDGMTIDTEGNLYVATFNGGTVQKVD  239 (310)
T ss_pred             ccccC---------------------------cceeEEeccCCCcCCCC-----CCcceEccCCcEEEEEecCcEEEEEC
Confidence            54221                           11234444433322211     12344566899999999999999999


Q ss_pred             CCCCeeeeecccccccEEEEEEc
Q 008467          428 MKQDKYVHDLREHSKEIYTIRWS  450 (564)
Q Consensus       428 ~~~~~~~~~~~~~~~~i~~i~~~  450 (564)
                      ..+++.+.+++-....|++.+|-
T Consensus       240 p~tGK~L~eiklPt~qitsccFg  262 (310)
T KOG4499|consen  240 PTTGKILLEIKLPTPQITSCCFG  262 (310)
T ss_pred             CCCCcEEEEEEcCCCceEEEEec
Confidence            99999999999889999999985

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.58  E-value=0.52  Score=49.75  Aligned_cols=92  Identities=20%  Similarity=0.400  Sum_probs=64.5

Q ss_pred             EeCCCeEEEEeCCCCeEEEEEe-CCCCCEEEEEEc--CCCCEEEEEeCCCcEEEEeCCC---------CeEEEEEe----
Q 008467          468 ASFDSTVKLWDVELGKLLYSLN-GHREPVYSLAFS--PTGEYLASGSLDKSMHIWSLKE---------GKIVKTYT----  531 (564)
Q Consensus       468 ~s~dg~i~iwd~~~~~~~~~~~-~h~~~i~~~~~s--pdg~~lasgs~dg~i~iw~~~~---------~~~~~~~~----  531 (564)
                      -+...++.|||.+.+..-++-. ....+|.++.|.  |||+.+.+.|....|.+|.-..         ...++.+.    
T Consensus        47 ~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~  126 (631)
T PF12234_consen   47 DSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSH  126 (631)
T ss_pred             ECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecC
Confidence            3344579999999887654432 346789999875  7899999999999999996531         12333332    


Q ss_pred             cCCCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467          532 GNGGIFEVCWNKEGDKIAACFANHTVCVLD  561 (564)
Q Consensus       532 ~~~~i~~~~w~~~g~~la~~~~~~~v~v~~  561 (564)
                      ...+|.+.+|-++|..++++ +| .+.|+|
T Consensus       127 T~h~Igds~Wl~~G~LvV~s-GN-qlfv~d  154 (631)
T PF12234_consen  127 TPHPIGDSIWLKDGTLVVGS-GN-QLFVFD  154 (631)
T ss_pred             CCCCccceeEecCCeEEEEe-CC-EEEEEC
Confidence            13568899999999777665 33 577765

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PHA02713 hypothetical protein; Provisional

Probab=95.33  E-value=1.5  Score=46.72  Aligned_cols=93  Identities=13%  Similarity=0.184  Sum_probs=46.7

Q ss_pred             cEEEEECCCcceeEEEeecccC-eEEEEcCCCceEEEEeCC------CeEEEEEcCCCce--eeEecCCCcceEEEEECC
Q 008467          339 TAIVWDVKTEEWKQQFEFHSGP-TLDVDWRNNVSFATSSTD------NMIYVCKIGENRP--IKTFAGHQGEVNCVKWDP  409 (564)
Q Consensus       339 ~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d------~~i~~~~~~~~~~--~~~~~~h~~~i~~v~~~~  409 (564)
                      .+..||+.+++|...-...... ...+...++..++.|+.+      ..++.++...+.-  +..+.........+.+  
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~--  350 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI--  350 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE--
Confidence            5677888877765432211111 122333456667776643      2356667655421  1111111111222222  


Q ss_pred             CCCEEEEEeCCC-----cEEEEeCCCCee
Q 008467          410 TGSLLASCSDDV-----TAKIWNMKQDKY  433 (564)
Q Consensus       410 ~~~~las~s~dg-----~i~iwd~~~~~~  433 (564)
                      +|++.+.|+.++     ++..||..+...
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W  379 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKW  379 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence            578888888764     377888776543

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.05  E-value=0.077  Score=47.39  Aligned_cols=102  Identities=17%  Similarity=0.146  Sum_probs=64.2

Q ss_pred             CCEEEEeeCCCcEEEEECCCccee-EEEeecccCeEEEEcC--CCceEEEEeCCCeEEEEEcCCCceeeEecCCC-cceE
Q 008467          328 GDYLLTGSCDKTAIVWDVKTEEWK-QQFEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-GEVN  403 (564)
Q Consensus       328 ~~~l~s~s~D~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-~~i~  403 (564)
                      +.-++.|+.+|.|.+|+....... ..+.....++..+-..  ......++..++.|+.|.+...+.+.....|+ .++.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e  149 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE  149 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence            356889999999999987621111 1111111222222222  22355677889999999999888777766776 4555


Q ss_pred             EEEECCCCCEEEEE--eCCCcEEEEeCC
Q 008467          404 CVKWDPTGSLLASC--SDDVTAKIWNMK  429 (564)
Q Consensus       404 ~v~~~~~~~~las~--s~dg~i~iwd~~  429 (564)
                      ....+..++++++.  |.|..++.|++.
T Consensus       150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  150 ELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             eeEEecCCceEEeeccccchhhhhcchh
Confidence            55555566667766  777777777764

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.05  E-value=0.98  Score=46.31  Aligned_cols=148  Identities=18%  Similarity=0.348  Sum_probs=88.0

Q ss_pred             cceEEEEECCCCCEEEEEe---CCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEE
Q 008467          400 GEVNCVKWDPTGSLLASCS---DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKL  476 (564)
Q Consensus       400 ~~i~~v~~~~~~~~las~s---~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~i  476 (564)
                      .++..++|. ||+.++-..   .+|.+++=|.   +.+.    .-..|+.+.|.|.+....    . .|+.......|.|
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~viG----qFEhV~GlsW~P~~~~~~----p-aLLAVQHkkhVtV   86 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KVIG----QFEHVHGLSWAPPCTADT----P-ALLAVQHKKHVTV   86 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCccccCCc---cEee----ccceeeeeeecCcccCCC----C-ceEEEeccceEEE
Confidence            467788897 676544321   2444443221   1122    224578999999764321    1 3445567889999


Q ss_pred             EeCC-----CCeEEEEEeCC---CCCE--EEEEEcCCCCEEEEEeCCCcEEEEeCCC--CeEEEEEecCCCEEEEEEccC
Q 008467          477 WDVE-----LGKLLYSLNGH---REPV--YSLAFSPTGEYLASGSLDKSMHIWSLKE--GKIVKTYTGNGGIFEVCWNKE  544 (564)
Q Consensus       477 wd~~-----~~~~~~~~~~h---~~~i--~~~~~spdg~~lasgs~dg~i~iw~~~~--~~~~~~~~~~~~i~~~~w~~~  544 (564)
                      |-+.     .++.+.+-..+   .-||  ....|+|....|+.-.....-.+++++.  ..+.....+.+-|.+.||.+|
T Consensus        87 WqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~D  166 (671)
T PF15390_consen   87 WQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKD  166 (671)
T ss_pred             EEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCc
Confidence            9875     23333332221   1122  3467999999988765554434566642  233344556677999999999


Q ss_pred             CCEEEEEEcCCcE--EEEE
Q 008467          545 GDKIAACFANHTV--CVLD  561 (564)
Q Consensus       545 g~~la~~~~~~~v--~v~~  561 (564)
                      |++|+++-++ .+  .|||
T Consensus       167 G~RLVVAvGS-sLHSyiWd  184 (671)
T PF15390_consen  167 GQRLVVAVGS-SLHSYIWD  184 (671)
T ss_pred             CCEEEEEeCC-eEEEEEec
Confidence            9999988655 44  4554

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.00  E-value=1.4  Score=45.16  Aligned_cols=114  Identities=14%  Similarity=0.268  Sum_probs=62.1

Q ss_pred             cceEEEEECCCC----CEEEEEeCCCcEEEEeCCC-----Ceeeeeccccc-c--cE--EEEEEccCCCCCCCCCCcEEE
Q 008467          400 GEVNCVKWDPTG----SLLASCSDDVTAKIWNMKQ-----DKYVHDLREHS-K--EI--YTIRWSPTGSGTNNPNQQLIL  465 (564)
Q Consensus       400 ~~i~~v~~~~~~----~~las~s~dg~i~iwd~~~-----~~~~~~~~~~~-~--~i--~~i~~~p~~~~~~~~~~~~~l  465 (564)
                      ..|..+.|.|-+    ..|........|.||.+..     .+.+..-..+- .  ++  ....|+|...         +|
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~---------iL  127 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA---------IL  127 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCc---------eE
Confidence            357889999853    3444555667899998742     22221110000 0  00  1234555432         34


Q ss_pred             EEEeCCCeEEEEeCC--CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEeCCC
Q 008467          466 ASASFDSTVKLWDVE--LGKLLYSLNGHREPVYSLAFSPTGEYLASGSL-DKSMHIWSLKE  523 (564)
Q Consensus       466 ~s~s~dg~i~iwd~~--~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~-dg~i~iw~~~~  523 (564)
                      +.-.....--+++++  +.+....++ ..+-|.|.+|.+||+.|+.+-. .=.-+|||-..
T Consensus       128 ~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  128 TVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             EEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence            333333333345554  334444554 3467999999999998876533 33567888543

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=94.82  E-value=3  Score=37.75  Aligned_cols=137  Identities=16%  Similarity=0.217  Sum_probs=78.8

Q ss_pred             CcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeeccccccc--------EEEEEEccCCCCCCCCCCcEEEEEEeC
Q 008467          399 QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE--------IYTIRWSPTGSGTNNPNQQLILASASF  470 (564)
Q Consensus       399 ~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~--------i~~i~~~p~~~~~~~~~~~~~l~s~s~  470 (564)
                      ....+.-..+|+|++++-.-.|-.- ++....+.....+.+|.-.        -..++|+.+        .+.+...-+.
T Consensus       108 knR~NDgkvdP~Gryy~GtMad~~~-~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d--------~K~fY~iDsl  178 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYGGTMADFGD-DLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSD--------AKKFYYIDSL  178 (310)
T ss_pred             hcccccCccCCCCceeeeeeccccc-cccccccEEEEeccCCCceeeehhccCCcccccccc--------CcEEEEEccC
Confidence            3456677789999985422222111 1222222222223333311        133455432        3345566777


Q ss_pred             CCeEEEEe--CCCC-----eEEEEEeCC---CC-CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec-CCCEEE
Q 008467          471 DSTVKLWD--VELG-----KLLYSLNGH---RE-PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFE  538 (564)
Q Consensus       471 dg~i~iwd--~~~~-----~~~~~~~~h---~~-~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~-~~~i~~  538 (564)
                      +-+|.-||  ..+|     +.++.++..   .. ....++..-+|.+.++.-..++|...|..+|+++.++.- ...|++
T Consensus       179 n~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qits  258 (310)
T KOG4499|consen  179 NYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITS  258 (310)
T ss_pred             ceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEE
Confidence            88888888  4444     344444321   11 113345566788888877788999999999999988764 345888


Q ss_pred             EEEccC
Q 008467          539 VCWNKE  544 (564)
Q Consensus       539 ~~w~~~  544 (564)
                      .||--.
T Consensus       259 ccFgGk  264 (310)
T KOG4499|consen  259 CCFGGK  264 (310)
T ss_pred             EEecCC
Confidence            888644

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.81  E-value=1.1  Score=41.68  Aligned_cols=129  Identities=19%  Similarity=0.189  Sum_probs=75.8

Q ss_pred             EEEECCCCCE-EEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCe-EEEEeCCC
Q 008467          404 CVKWDPTGSL-LASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDST-VKLWDVEL  481 (564)
Q Consensus       404 ~v~~~~~~~~-las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~-i~iwd~~~  481 (564)
                      +....+||++ +++.+++|.+.-=          . .-......+.++|...        ..++-+-.-|+ ..++|...
T Consensus        40 saf~~~dgs~g~a~~~eaGk~v~~----------~-~lpaR~Hgi~~~p~~~--------ravafARrPGtf~~vfD~~~  100 (366)
T COG3490          40 SAFDARDGSFGAATLSEAGKIVFA----------T-ALPARGHGIAFHPALP--------RAVAFARRPGTFAMVFDPNG  100 (366)
T ss_pred             eeeeccCCceeEEEEccCCceeee----------e-ecccccCCeecCCCCc--------ceEEEEecCCceEEEECCCC
Confidence            3444667776 5666777765321          0 0112223455555432        12333444443 45678776


Q ss_pred             CeEEEEEeCCCCC--EEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCC-eEEEEEecCC-CEEEEEEccCCCEEEEE
Q 008467          482 GKLLYSLNGHREP--VYSLAFSPTGEYLASGSLD-----KSMHIWSLKEG-KIVKTYTGNG-GIFEVCWNKEGDKIAAC  551 (564)
Q Consensus       482 ~~~~~~~~~h~~~--i~~~~~spdg~~lasgs~d-----g~i~iw~~~~~-~~~~~~~~~~-~i~~~~w~~~g~~la~~  551 (564)
                      .+.+.++......  --.-.|||||.+|...-.|     |.|-|||.+.+ ..+..|...+ +.-++.|.+||..|+.+
T Consensus       101 ~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvva  179 (366)
T COG3490         101 AQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVA  179 (366)
T ss_pred             CcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEe
Confidence            6655444322111  1123699999999765433     78999998754 3456666544 56789999999999987

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.75  E-value=0.015  Score=61.36  Aligned_cols=113  Identities=18%  Similarity=0.262  Sum_probs=64.7

Q ss_pred             ECCCCCEEEEEeCCCcEEEEeCC-----CCeeeeecccccc-cEEEEEEccCCCC-CCCCCCcEEEEEEeCCCeEEEEeC
Q 008467          407 WDPTGSLLASCSDDVTAKIWNMK-----QDKYVHDLREHSK-EIYTIRWSPTGSG-TNNPNQQLILASASFDSTVKLWDV  479 (564)
Q Consensus       407 ~~~~~~~las~s~dg~i~iwd~~-----~~~~~~~~~~~~~-~i~~i~~~p~~~~-~~~~~~~~~l~s~s~dg~i~iwd~  479 (564)
                      .+|||+.||+++.||.++.|.+.     ..++.+..+.|.+ +-.|..+...... ...+.-.+.+-+...+..+++|..
T Consensus       243 lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~  322 (1283)
T KOG1916|consen  243 LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAE  322 (1283)
T ss_pred             eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeec
Confidence            79999999999999999988753     3345666677763 2222222221111 111122234444455677999987


Q ss_pred             CCCeEEEEEeCCCCCEEEEEEcCCCCE------------EEEEeCCCcEEEEeCC
Q 008467          480 ELGKLLYSLNGHREPVYSLAFSPTGEY------------LASGSLDKSMHIWSLK  522 (564)
Q Consensus       480 ~~~~~~~~~~~h~~~i~~~~~spdg~~------------lasgs~dg~i~iw~~~  522 (564)
                      ...+|+..+  .-..|..+. -+||..            +++-+.++.|++|.-+
T Consensus       323 a~w~Cll~~--~~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~  374 (1283)
T KOG1916|consen  323 APWQCLLDK--LIDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNR  374 (1283)
T ss_pred             cchhhhhhh--cccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcc
Confidence            766665222  123344444 334431            3445678888888643

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.56  E-value=0.49  Score=51.95  Aligned_cols=139  Identities=12%  Similarity=0.086  Sum_probs=84.4

Q ss_pred             eEEEEECCCCCEEEE--EeCCCcEEEEeCCCCeee-----eecccc------cccEEEEEEccCCCCCCCCCCcEEEEEE
Q 008467          402 VNCVKWDPTGSLLAS--CSDDVTAKIWNMKQDKYV-----HDLREH------SKEIYTIRWSPTGSGTNNPNQQLILASA  468 (564)
Q Consensus       402 i~~v~~~~~~~~las--~s~dg~i~iwd~~~~~~~-----~~~~~~------~~~i~~i~~~p~~~~~~~~~~~~~l~s~  468 (564)
                      |..+...+|++..+.  .+++-.|..||+++-..-     .-|..|      .....++.|.|.-.        ...+.+
T Consensus       103 i~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp--------~n~av~  174 (1405)
T KOG3630|consen  103 IVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP--------LNSAVD  174 (1405)
T ss_pred             ceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc--------chhhhh
Confidence            444555667665433  344446788887642211     111111      12234567776542        346677


Q ss_pred             eCCCeEEEEeCCCCeE-EEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec-----CCCEEEEEEc
Q 008467          469 SFDSTVKLWDVELGKL-LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-----NGGIFEVCWN  542 (564)
Q Consensus       469 s~dg~i~iwd~~~~~~-~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~-----~~~i~~~~w~  542 (564)
                      ..|+.|++..+..... +.++ ......++++|+|.|+-++.|-..|++.-|... +++......     +..|.+|+|-
T Consensus       175 l~dlsl~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl  252 (1405)
T KOG3630|consen  175 LSDLSLRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWL  252 (1405)
T ss_pred             ccccchhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEe
Confidence            8899998887653222 2222 234568999999999999999999999888653 333333322     4578999998


Q ss_pred             cCCCEEEE
Q 008467          543 KEGDKIAA  550 (564)
Q Consensus       543 ~~g~~la~  550 (564)
                      ..-.+|++
T Consensus       253 ~t~eflvv  260 (1405)
T KOG3630|consen  253 STQEFLVV  260 (1405)
T ss_pred             cceeEEEE
Confidence            77666654

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.48  E-value=4.4  Score=38.18  Aligned_cols=139  Identities=16%  Similarity=0.248  Sum_probs=79.9

Q ss_pred             CCeEEEEECCCCCEEEEEe---CCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEE-CCCccee
Q 008467          276 KDVTTLDWNGEGTLLATGS---YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD-VKTEEWK  351 (564)
Q Consensus       276 ~~V~~l~~s~~g~~l~sg~---~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd-~~~~~~~  351 (564)
                      ..+.+.++|++|..++...   ....++++...+.....+.+  ..+..-.|++++........+...+++. ...+...
T Consensus        24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            3688999999999877655   33466666655554444433  2667778999876666655555556553 2222111


Q ss_pred             EEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEe---CCCcEEEEeC
Q 008467          352 QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS---DDVTAKIWNM  428 (564)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s---~dg~i~iwd~  428 (564)
                      .         ..++|                             ..-.+.|..+++||||..+|.-.   .++.|.+=-+
T Consensus       102 ~---------~~v~~-----------------------------~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V  143 (253)
T PF10647_consen  102 P---------VEVDW-----------------------------PGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGV  143 (253)
T ss_pred             e---------EEecc-----------------------------cccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEE
Confidence            0         00000                             01111789999999999877655   2455555432


Q ss_pred             C---CC--e----eeeecccccccEEEEEEccCCC
Q 008467          429 K---QD--K----YVHDLREHSKEIYTIRWSPTGS  454 (564)
Q Consensus       429 ~---~~--~----~~~~~~~~~~~i~~i~~~p~~~  454 (564)
                      .   .+  .    .+.........+..+.|.+++.
T Consensus       144 ~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~  178 (253)
T PF10647_consen  144 VRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST  178 (253)
T ss_pred             EeCCCCCcceeccceEecccccCcceeeeecCCCE
Confidence            1   12  1    1111122345788999998764

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=94.44  E-value=3  Score=44.45  Aligned_cols=185  Identities=15%  Similarity=0.183  Sum_probs=94.0

Q ss_pred             CCEEEEeeCC------CcEEEEECCCcceeEEEeeccc-CeEEEEcCCCceEEEEeCC-C-----eEEEEEcCCCc--ee
Q 008467          328 GDYLLTGSCD------KTAIVWDVKTEEWKQQFEFHSG-PTLDVDWRNNVSFATSSTD-N-----MIYVCKIGENR--PI  392 (564)
Q Consensus       328 ~~~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d-~-----~i~~~~~~~~~--~~  392 (564)
                      +..++.|+.+      .++..+|+.++.|......... ....+...++..+++|+.+ +     .+..||...++  .+
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~  364 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV  364 (571)
T ss_pred             CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceecc
Confidence            3444555555      4688899988877664433222 2344555677888888888 3     35566655443  11


Q ss_pred             eEecCCCcceEEEEECCCCCEEEEEeCCCc-----EEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEE
Q 008467          393 KTFAGHQGEVNCVKWDPTGSLLASCSDDVT-----AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAS  467 (564)
Q Consensus       393 ~~~~~h~~~i~~v~~~~~~~~las~s~dg~-----i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s  467 (564)
                      ..+.......-...  -+|.+.|.|+.||.     +..||..+.+.-..-. .........-..-       ++ .+.+.
T Consensus       365 a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~-------~g-~iYi~  433 (571)
T KOG4441|consen  365 APMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVL-------GG-KLYII  433 (571)
T ss_pred             CCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEE-------CC-EEEEE
Confidence            11111111111121  26888899999874     6678876654321100 1111111111111       11 24455


Q ss_pred             EeCCC------eEEEEeCCCCeE--EEEEeCCCCCEEEEEEcCCCCEEEEEeCCCc-----EEEEeCCCCe
Q 008467          468 ASFDS------TVKLWDVELGKL--LYSLNGHREPVYSLAFSPTGEYLASGSLDKS-----MHIWSLKEGK  525 (564)
Q Consensus       468 ~s~dg------~i~iwd~~~~~~--~~~~~~h~~~i~~~~~spdg~~lasgs~dg~-----i~iw~~~~~~  525 (564)
                      |+.++      ++..||..+++-  +..+..-+.......  -++...|.||.|+.     |..||..+.+
T Consensus       434 GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~--~~~~iYvvGG~~~~~~~~~VE~ydp~~~~  502 (571)
T KOG4441|consen  434 GGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV--LNGKIYVVGGFDGTSALSSVERYDPETNQ  502 (571)
T ss_pred             cCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE--ECCEEEEECCccCCCccceEEEEcCCCCc
Confidence            66443      466777765532  222222122222222  26778888888763     6778877654

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.42  E-value=4.5  Score=38.05  Aligned_cols=187  Identities=14%  Similarity=0.223  Sum_probs=111.4

Q ss_pred             cCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecc-cCeEEEEcCCCceEEEEe-CCCeEEEEEcCCCc
Q 008467          313 SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS-GPTLDVDWRNNVSFATSS-TDNMIYVCKIGENR  390 (564)
Q Consensus       313 ~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~d~~i~~~~~~~~~  390 (564)
                      .+-+..|.++.|+|+.+.|++......-.+|=-..|.++..+.... ...-.+.|..+..|+.+. .++.++++.+....
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t  161 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT  161 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence            3445559999999999999988888888888667788887765433 123346677777776554 57777777766542


Q ss_pred             ee----------eEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCee---eeeccccc-------ccEEEEEEc
Q 008467          391 PI----------KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY---VHDLREHS-------KEIYTIRWS  450 (564)
Q Consensus       391 ~~----------~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~---~~~~~~~~-------~~i~~i~~~  450 (564)
                      .+          ......+.....++|+|....|..+-+-.-++||.......   ++....+.       ..+.++.|.
T Consensus       162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~  241 (316)
T COG3204         162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN  241 (316)
T ss_pred             cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence            11          11112244577899999999888888888888877653321   11111111       123334444


Q ss_pred             cCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCC---------CCEEEEEEcCCCCEEE
Q 008467          451 PTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR---------EPVYSLAFSPTGEYLA  508 (564)
Q Consensus       451 p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~---------~~i~~~~~spdg~~la  508 (564)
                      +.        ...+|+-+..++.+.-.|.. |..+..+.-+.         .....|+..++|...+
T Consensus       242 ~~--------~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYI  299 (316)
T COG3204         242 AI--------TNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYI  299 (316)
T ss_pred             CC--------CCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEE
Confidence            32        22356666777777777765 44433332111         1134566666665443

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.17  E-value=5.7  Score=38.30  Aligned_cols=105  Identities=19%  Similarity=0.208  Sum_probs=54.5

Q ss_pred             cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 008467          439 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMH  517 (564)
Q Consensus       439 ~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~  517 (564)
                      .-.+.+..+.-+++|.         ++++++.-....-||.-.. -..+. +.-...|.+|.|+|++...+++ ..|.|+
T Consensus       142 ~~~gs~~~~~r~~dG~---------~vavs~~G~~~~s~~~G~~~w~~~~-r~~~~riq~~gf~~~~~lw~~~-~Gg~~~  210 (302)
T PF14870_consen  142 ETSGSINDITRSSDGR---------YVAVSSRGNFYSSWDPGQTTWQPHN-RNSSRRIQSMGFSPDGNLWMLA-RGGQIQ  210 (302)
T ss_dssp             S----EEEEEE-TTS----------EEEEETTSSEEEEE-TT-SS-EEEE---SSS-EEEEEE-TTS-EEEEE-TTTEEE
T ss_pred             CCcceeEeEEECCCCc---------EEEEECcccEEEEecCCCccceEEc-cCccceehhceecCCCCEEEEe-CCcEEE
Confidence            3446677777777775         5665554444556775422 12222 2245689999999998876654 778787


Q ss_pred             EEeCCCCeEEEEEe--------cCCCEEEEEEccCCCEEEEEEcCCcE
Q 008467          518 IWSLKEGKIVKTYT--------GNGGIFEVCWNKEGDKIAACFANHTV  557 (564)
Q Consensus       518 iw~~~~~~~~~~~~--------~~~~i~~~~w~~~g~~la~~~~~~~v  557 (564)
                      +=+...  -..++.        ..-++.+++|.+++...|+|. +|.+
T Consensus       211 ~s~~~~--~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l  255 (302)
T PF14870_consen  211 FSDDPD--DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL  255 (302)
T ss_dssp             EEE-TT--EEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E
T ss_pred             EccCCC--CccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE
Confidence            766211  122221        122489999999988888774 4444

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=94.17  E-value=6.4  Score=38.81  Aligned_cols=65  Identities=14%  Similarity=0.165  Sum_probs=39.6

Q ss_pred             CCEEEEEEcC-------CCCEEEEEeCCCcEEEEeCCCCeEEEE---Ee-cCC-CEEEEEEccCCCEEEEEEcCCcE
Q 008467          493 EPVYSLAFSP-------TGEYLASGSLDKSMHIWSLKEGKIVKT---YT-GNG-GIFEVCWNKEGDKIAACFANHTV  557 (564)
Q Consensus       493 ~~i~~~~~sp-------dg~~lasgs~dg~i~iw~~~~~~~~~~---~~-~~~-~i~~~~w~~~g~~la~~~~~~~v  557 (564)
                      ..+..+.|-.       .|.++++.-..+.|....+..+..+..   +- ... .+.+++..|||.+.++...+|.|
T Consensus       253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~i  329 (331)
T PF07995_consen  253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKI  329 (331)
T ss_dssp             --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTE
T ss_pred             cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeE
Confidence            4456666653       344566555566787777764432222   11 222 68999999999998888888876

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.82  E-value=1.4  Score=47.94  Aligned_cols=33  Identities=24%  Similarity=0.492  Sum_probs=27.7

Q ss_pred             CCcceEEEEECCC---CCEEEEEeCCCcEEEEeCCC
Q 008467          398 HQGEVNCVKWDPT---GSLLASCSDDVTAKIWNMKQ  430 (564)
Q Consensus       398 h~~~i~~v~~~~~---~~~las~s~dg~i~iwd~~~  430 (564)
                      +...|..+.|+|.   +..|+.-..|+++|+||+..
T Consensus       145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  145 SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD  180 (717)
T ss_pred             CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence            3457889999997   47888999999999999864

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.65  E-value=2.7  Score=39.51  Aligned_cols=115  Identities=9%  Similarity=0.271  Sum_probs=78.3

Q ss_pred             cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEe--CCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 008467          439 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN--GHREPVYSLAFSPTGEYLASGSLDKSM  516 (564)
Q Consensus       439 ~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~h~~~i~~~~~spdg~~lasgs~dg~i  516 (564)
                      +-...+.++.|+|+..         .|.+......--||=...|..+.++.  +-.+ ...|.|.-+|+|.++--.++.+
T Consensus        83 g~~~nvS~LTynp~~r---------tLFav~n~p~~iVElt~~GdlirtiPL~g~~D-pE~Ieyig~n~fvi~dER~~~l  152 (316)
T COG3204          83 GETANVSSLTYNPDTR---------TLFAVTNKPAAIVELTKEGDLIRTIPLTGFSD-PETIEYIGGNQFVIVDERDRAL  152 (316)
T ss_pred             cccccccceeeCCCcc---------eEEEecCCCceEEEEecCCceEEEecccccCC-hhHeEEecCCEEEEEehhcceE
Confidence            3344588999999765         34444444555556555688887763  3222 3668888889998888889999


Q ss_pred             EEEeCCCCeEEEE----------Eec-CCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          517 HIWSLKEGKIVKT----------YTG-NGGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       517 ~iw~~~~~~~~~~----------~~~-~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      .++.+.....+..          +.. +.+--.++|+|....|.++-...-+.||-+.
T Consensus       153 ~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~  210 (316)
T COG3204         153 YLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT  210 (316)
T ss_pred             EEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence            9998876532211          112 4566789999999998888777677777654

>PHA03098 kelch-like protein; Provisional

Probab=93.63  E-value=2.6  Score=44.75  Aligned_cols=93  Identities=16%  Similarity=0.164  Sum_probs=43.5

Q ss_pred             cEEEEECCCcceeEEEeeccc-CeEEEEcCCCceEEEEeCCC-----eEEEEEcCCCce--eeEecCCCcceEEEEECCC
Q 008467          339 TAIVWDVKTEEWKQQFEFHSG-PTLDVDWRNNVSFATSSTDN-----MIYVCKIGENRP--IKTFAGHQGEVNCVKWDPT  410 (564)
Q Consensus       339 ~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~-----~i~~~~~~~~~~--~~~~~~h~~~i~~v~~~~~  410 (564)
                      .+..||+.+.+|...-..... ....+...++..++.|+.++     .+..|+..+++=  +..+.........+.  -+
T Consensus       312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~--~~  389 (534)
T PHA03098        312 SVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVN--VN  389 (534)
T ss_pred             cEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEE--EC
Confidence            467788888777543221111 11222334556666666542     355566544321  111110111111122  25


Q ss_pred             CCEEEEEeCC------CcEEEEeCCCCee
Q 008467          411 GSLLASCSDD------VTAKIWNMKQDKY  433 (564)
Q Consensus       411 ~~~las~s~d------g~i~iwd~~~~~~  433 (564)
                      +++++.|+.+      ..+..||..+.+.
T Consensus       390 ~~iYv~GG~~~~~~~~~~v~~yd~~t~~W  418 (534)
T PHA03098        390 NLIYVIGGISKNDELLKTVECFSLNTNKW  418 (534)
T ss_pred             CEEEEECCcCCCCcccceEEEEeCCCCee
Confidence            6777777732      3577888776543

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.59  E-value=1.7  Score=43.19  Aligned_cols=133  Identities=16%  Similarity=0.223  Sum_probs=84.1

Q ss_pred             CCCCEEEEEeCCCeEEEEECCC---ceeEee-cCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeE----EEee
Q 008467          285 GEGTLLATGSYDGQARIWSTNG---DLKCTL-SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ----QFEF  356 (564)
Q Consensus       285 ~~g~~l~sg~~dg~i~vw~~~~---~~~~~~-~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~----~~~~  356 (564)
                      .|.+..+.+...|.+.=|-+.|   .....+ ....++|.+++|++|.+.|+.--.|++|.+.+....+...    ....
T Consensus        31 DDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~  110 (657)
T KOG2377|consen   31 DDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKT  110 (657)
T ss_pred             ccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhcc
Confidence            3444444555556666665433   222222 2346799999999999999999999999999874333222    2223


Q ss_pred             cccCeEEEEcCCCceEEEEeCCCeEEEEEc-CCCceeeEecCCCcceEEEEECCCCCEEEEEe
Q 008467          357 HSGPTLDVDWRNNVSFATSSTDNMIYVCKI-GENRPIKTFAGHQGEVNCVKWDPTGSLLASCS  418 (564)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~-~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s  418 (564)
                      ....+..+.|..+..++.-...|. -+|.+ ...+.++....|.-.|+=-.|.++.+.+.-|+
T Consensus       111 k~~~IlGF~W~~s~e~A~i~~~G~-e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t  172 (657)
T KOG2377|consen  111 KNANILGFCWTSSTEIAFITDQGI-EFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST  172 (657)
T ss_pred             CcceeEEEEEecCeeEEEEecCCe-EEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence            344588999988877776665554 22222 22334455566777788888888877654443

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=93.40  E-value=9.5  Score=38.28  Aligned_cols=195  Identities=12%  Similarity=0.157  Sum_probs=90.7

Q ss_pred             CCCEEEEEE-CCCcEEEEeCCCCCCCCCCCCCCceEEEEEeecccc-cc--CCCCeEEEEECCCCCEEEEEeCC------
Q 008467          227 AGSLLASGS-GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT-NE--KSKDVTTLDWNGEGTLLATGSYD------  296 (564)
Q Consensus       227 ~~~~lasgs-~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~V~~l~~s~~g~~l~sg~~d------  296 (564)
                      +.++|...+ ..+.|.|.|+.+....      |   ...+...... ..  .-..-.++.--|+|++++|+-.|      
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~------P---~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~  156 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRK------P---RLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGP  156 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS----------EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S-
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCC------C---ceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCC
Confidence            346777766 6788999998643211      1   1111111100 00  00011222334688888886432      


Q ss_pred             CeEEEEECCC-ceeEeecC---CCCCEEEEEeCCCCCEEEEeeC--------------------CCcEEEEECCCcceeE
Q 008467          297 GQARIWSTNG-DLKCTLSK---HKGPIFSLKWNKKGDYLLTGSC--------------------DKTAIVWDVKTEEWKQ  352 (564)
Q Consensus       297 g~i~vw~~~~-~~~~~~~~---h~~~V~~l~~~~~~~~l~s~s~--------------------D~~v~iwd~~~~~~~~  352 (564)
                      |-+.+.|-++ .++.....   ...--+.+-|.|..+.++|...                    ..++.+||+.+.+.++
T Consensus       157 Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q  236 (461)
T PF05694_consen  157 GGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQ  236 (461)
T ss_dssp             -EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEE
T ss_pred             CcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEee
Confidence            3455666542 22222221   1223456777888888888663                    3589999999999999


Q ss_pred             EEeecc--cCeEEEEcC----CCceEEEEeCCCeEEEEEcCC-Cc----eeeEec-----C------------CCcceEE
Q 008467          353 QFEFHS--GPTLDVDWR----NNVSFATSSTDNMIYVCKIGE-NR----PIKTFA-----G------------HQGEVNC  404 (564)
Q Consensus       353 ~~~~~~--~~~~~~~~~----~~~~~~~~~~d~~i~~~~~~~-~~----~~~~~~-----~------------h~~~i~~  404 (564)
                      .+....  ...+.+.|.    ...-|+.+.....|+.|--.. +.    .+..+.     +            -..-|+.
T Consensus       237 ~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitD  316 (461)
T PF05694_consen  237 TIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITD  316 (461)
T ss_dssp             EEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------
T ss_pred             EEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEe
Confidence            988764  345677764    235678777777777765422 11    111111     1            1245788


Q ss_pred             EEECCCCCEEEEEe-CCCcEEEEeCCC
Q 008467          405 VKWDPTGSLLASCS-DDVTAKIWNMKQ  430 (564)
Q Consensus       405 v~~~~~~~~las~s-~dg~i~iwd~~~  430 (564)
                      |..|.|.++|..+. .+|.||.||+..
T Consensus       317 I~iSlDDrfLYvs~W~~GdvrqYDISD  343 (461)
T PF05694_consen  317 ILISLDDRFLYVSNWLHGDVRQYDISD  343 (461)
T ss_dssp             EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred             EEEccCCCEEEEEcccCCcEEEEecCC
Confidence            99999999886555 599999999864

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.26  E-value=2.9  Score=44.40  Aligned_cols=109  Identities=14%  Similarity=0.255  Sum_probs=69.2

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecc-cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC--
Q 008467          404 CVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE--  480 (564)
Q Consensus       404 ~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~-~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~--  480 (564)
                      .+.-+.-++..+.-+...++.|||.+.+....+-. ...+.|..+.|...+.      .+.+| +.+....|.++.-.  
T Consensus        34 li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d------~qsiL-aVGf~~~v~l~~Q~R~  106 (631)
T PF12234_consen   34 LISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPD------GQSIL-AVGFPHHVLLYTQLRY  106 (631)
T ss_pred             eEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCC------CCEEE-EEEcCcEEEEEEccch
Confidence            34444445554444455679999998877543222 4567899999986543      33445 55678888888531  


Q ss_pred             ---CC----eEEEE--EeCCC-CCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 008467          481 ---LG----KLLYS--LNGHR-EPVYSLAFSPTGEYLASGSLDKSMHIWSL  521 (564)
Q Consensus       481 ---~~----~~~~~--~~~h~-~~i~~~~~spdg~~lasgs~dg~i~iw~~  521 (564)
                         +.    ..+..  +..|+ .+|.+..|.++|.+++.+|  +.+.|++-
T Consensus       107 dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  107 DYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             hhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence               11    12222  23344 5899999999999887654  45888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=93.24  E-value=16  Score=40.37  Aligned_cols=150  Identities=14%  Similarity=0.193  Sum_probs=85.2

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeeeeecccccccEE-EEEE--ccCCC--CCCCC--CCcEEEEEEeC----------CCe
Q 008467          411 GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY-TIRW--SPTGS--GTNNP--NQQLILASASF----------DST  473 (564)
Q Consensus       411 ~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~-~i~~--~p~~~--~~~~~--~~~~~l~s~s~----------dg~  473 (564)
                      +..|+.++.|+.+.-.|.++++.+..+... +.+. ....  .+.+.  ....|  .+. .++.|+.          +|.
T Consensus       260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g-~VIvG~~v~d~~~~~~~~G~  337 (764)
T TIGR03074       260 ARRIILPTSDARLIALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGT-TVVIGGRVADNYSTDEPSGV  337 (764)
T ss_pred             CCEEEEecCCCeEEEEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECC-EEEEEecccccccccCCCcE
Confidence            346778888999999999999887665321 1110 0000  00000  00001  011 2334432          688


Q ss_pred             EEEEeCCCCeEEEEEeCC----------------C-CCE-EEEEEcCCCCEEEEEe------------------CCCcEE
Q 008467          474 VKLWDVELGKLLYSLNGH----------------R-EPV-YSLAFSPTGEYLASGS------------------LDKSMH  517 (564)
Q Consensus       474 i~iwd~~~~~~~~~~~~h----------------~-~~i-~~~~~spdg~~lasgs------------------~dg~i~  517 (564)
                      |+-+|+++|+.+..+..-                . ..+ ..+++.|....+..+.                  ..+.|.
T Consensus       338 I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slv  417 (764)
T TIGR03074       338 IRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLV  417 (764)
T ss_pred             EEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEE
Confidence            999999999999876421                0 011 2234555443333211                  235678


Q ss_pred             EEeCCCCeEEEEEec-CCCE-----------EEEEEccCCC---EEEEEEcCCcEEEEEee
Q 008467          518 IWSLKEGKIVKTYTG-NGGI-----------FEVCWNKEGD---KIAACFANHTVCVLDFR  563 (564)
Q Consensus       518 iw~~~~~~~~~~~~~-~~~i-----------~~~~w~~~g~---~la~~~~~~~v~v~~~~  563 (564)
                      -.|.++|++...|+. +..+           .++. ..+|+   .|+.+..+|.+.++|-+
T Consensus       418 ALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~-~~~G~~~~~v~~~~K~G~~~vlDr~  477 (764)
T TIGR03074       418 ALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLP-DADGTTVPALVAPTKQGQIYVLDRR  477 (764)
T ss_pred             EEeCCCCceEEEecccCCccccccccCCceEEeee-cCCCcEeeEEEEECCCCEEEEEECC
Confidence            888999998887764 2222           2332 12664   78888899999999854

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=93.14  E-value=16  Score=40.21  Aligned_cols=314  Identities=12%  Similarity=0.163  Sum_probs=157.1

Q ss_pred             eEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCe
Q 008467          219 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQ  298 (564)
Q Consensus       219 V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~  298 (564)
                      |-.+.|--|..+|+.+.+||.+.-+-+...+-...         ..+.    ..-...+++--.|+..++.-+-+..|.-
T Consensus       586 Il~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~ls---------d~Kk----~~lGt~P~~Lr~f~sk~~t~vfa~sdrP  652 (1096)
T KOG1897|consen  586 ILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLS---------DRKK----VTLGTQPISLRTFSSKSRTAVFALSDRP  652 (1096)
T ss_pred             eeeEEeeccceEEEEEcCCceEEEEEEEcccceEc---------cccc----cccCCCCcEEEEEeeCCceEEEEeCCCC
Confidence            44455656678899999999888765543221000         0000    0112355666677776666566667777


Q ss_pred             EEEEECCCceeEeecCCCCCEEEEEeCCC--CCEEEEeeCCCcEEEEECCCcc--eeEEEeecccCeEEEEcCC-CceEE
Q 008467          299 ARIWSTNGDLKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEE--WKQQFEFHSGPTLDVDWRN-NVSFA  373 (564)
Q Consensus       299 i~vw~~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~  373 (564)
                      ..+|..++++..+.-.-+..-....|+.+  ...++++. .+.+++--+..-.  .+++...+. +...+++.+ ...|.
T Consensus       653 ~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~-~prrI~~q~~sl~~~  730 (1096)
T KOG1897|consen  653 TVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLGE-SPRRICYQESSLTFG  730 (1096)
T ss_pred             EEEEecCCcEEEeccchHHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCCC-ChhheEecccceEEE
Confidence            78888777765432211111111223322  23344443 3455555432211  112222211 122233333 22233


Q ss_pred             EEeC-----------CCeEEEEEcCCCceeeEecCCC-------cceEEEEECCC-CCEEEEEe----------CCCcEE
Q 008467          374 TSST-----------DNMIYVCKIGENRPIKTFAGHQ-------GEVNCVKWDPT-GSLLASCS----------DDVTAK  424 (564)
Q Consensus       374 ~~~~-----------d~~i~~~~~~~~~~~~~~~~h~-------~~i~~v~~~~~-~~~las~s----------~dg~i~  424 (564)
                      ..+.           ...+...++-......++..|.       -.|.++.|..| +++++.|.          ..|.|.
T Consensus       731 v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIi  810 (1096)
T KOG1897|consen  731 VLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRII  810 (1096)
T ss_pred             EEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEE
Confidence            2221           1222222221222233333343       13556668777 66777764          235666


Q ss_pred             EEeCCCCeeeeeccc--ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcC
Q 008467          425 IWNMKQDKYVHDLRE--HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSP  502 (564)
Q Consensus       425 iwd~~~~~~~~~~~~--~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp  502 (564)
                      ++.+...+.+..+..  -.+.++++.-- +|         .+|  ++....|++|++.+.+.++.-..|..++..+...-
T Consensus       811 vfe~~e~~~L~~v~e~~v~Gav~aL~~f-ng---------kll--A~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v  878 (1096)
T KOG1897|consen  811 VFEFEELNSLELVAETVVKGAVYALVEF-NG---------KLL--AGINQSVRLYEWTTERELRIECNISNPIIALDLQV  878 (1096)
T ss_pred             EEEEecCCceeeeeeeeeccceeehhhh-CC---------eEE--EecCcEEEEEEccccceehhhhcccCCeEEEEEEe
Confidence            666544222222111  12334443321 11         133  45678999999998877777777889999999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCC--CeEEEEEe--cCCCEEEEEEccCCCEEEEEEcCCcEEEE
Q 008467          503 TGEYLASGSLDKSMHIWSLKE--GKIVKTYT--GNGGIFEVCWNKEGDKIAACFANHTVCVL  560 (564)
Q Consensus       503 dg~~lasgs~dg~i~iw~~~~--~~~~~~~~--~~~~i~~~~w~~~g~~la~~~~~~~v~v~  560 (564)
                      .|..+|.|..-+++.+-..+.  |.....-+  ....+..+..= +++..+.+-.+|.+.+.
T Consensus       879 ~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil-~~d~ylgae~~gNlf~v  939 (1096)
T KOG1897|consen  879 KGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEIL-DDDTYLGAENSGNLFTV  939 (1096)
T ss_pred             cCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEe-cCceEEeecccccEEEE
Confidence            999999999888776655543  32322211  12233444433 34444445455555443

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=93.08  E-value=7.7  Score=36.30  Aligned_cols=178  Identities=13%  Similarity=0.138  Sum_probs=98.4

Q ss_pred             EEEEECCCCCEEEEEECCC--cEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCC
Q 008467          220 CACAWSPAGSLLASGSGDS--TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDG  297 (564)
Q Consensus       220 ~~~~~sp~~~~lasgs~D~--~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg  297 (564)
                      ..+.|..+|.++-|.|.-|  .++.+|+.+++....           .......-+  ..++-+    ++++..-.-.++
T Consensus        48 QGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~-----------~~l~~~~Fg--EGit~~----~d~l~qLTWk~~  110 (264)
T PF05096_consen   48 QGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQS-----------VPLPPRYFG--EGITIL----GDKLYQLTWKEG  110 (264)
T ss_dssp             EEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEE-----------EE-TTT--E--EEEEEE----TTEEEEEESSSS
T ss_pred             ccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEE-----------EECCccccc--eeEEEE----CCEEEEEEecCC
Confidence            4577877888888877554  799999988753211           111110000  012211    223334445678


Q ss_pred             eEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeeccc-----CeEEEEcCCCce
Q 008467          298 QARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG-----PTLDVDWRNNVS  371 (564)
Q Consensus       298 ~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~  371 (564)
                      ...+||.+. +...++. ..+.=++|+  .+++.|+.......+.++|+.+.+....+.....     ....+.|.+...
T Consensus       111 ~~f~yd~~tl~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~I  187 (264)
T PF05096_consen  111 TGFVYDPNTLKKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKI  187 (264)
T ss_dssp             EEEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEE
T ss_pred             eEEEEccccceEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEE
Confidence            889999864 3333342 334557777  4567777777777899999988777665543321     234556666666


Q ss_pred             EEEEeCCCeEEEEEcCCCceeeEec------------CC---CcceEEEEECCCCCE-EEEE
Q 008467          372 FATSSTDNMIYVCKIGENRPIKTFA------------GH---QGEVNCVKWDPTGSL-LASC  417 (564)
Q Consensus       372 ~~~~~~d~~i~~~~~~~~~~~~~~~------------~h---~~~i~~v~~~~~~~~-las~  417 (564)
                      +|-.=....|...|..+++.+..+.            .+   .+-.+.|||+|.... ++||
T Consensus       188 yANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  188 YANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            6655555666666666666554331            01   345789999887665 4555

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=92.93  E-value=10  Score=37.35  Aligned_cols=54  Identities=13%  Similarity=0.145  Sum_probs=34.5

Q ss_pred             EEEEEeCCCeEEEEeCCCCeEEE---EE-eCCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 008467          464 ILASASFDSTVKLWDVELGKLLY---SL-NGHREPVYSLAFSPTGEYLASGSLDKSMH  517 (564)
Q Consensus       464 ~l~s~s~dg~i~iwd~~~~~~~~---~~-~~h~~~i~~~~~spdg~~lasgs~dg~i~  517 (564)
                      ++++.-..+.|....+..+..+.   .+ ......+..|++.|||.++++-+.+|.|.
T Consensus       273 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  273 LFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             EEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred             EEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence            45544445677777776443322   22 23444799999999999998888888764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.90  E-value=0.44  Score=52.34  Aligned_cols=151  Identities=16%  Similarity=0.138  Sum_probs=88.9

Q ss_pred             ceEEEEECCCCCE--EEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC-CEEEEEe
Q 008467          218 EVCACAWSPAGSL--LASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG-TLLATGS  294 (564)
Q Consensus       218 ~V~~~~~sp~~~~--lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g-~~l~sg~  294 (564)
                      ++..+..++|++.  ++..+.+-.|..+|+.+-......+..++..    +.  .......-+.++.|+|.- ...+...
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~----s~--ts~ek~vf~~~~~wnP~vp~n~av~l  175 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKN----SA--TSFEKPVFQLKNVWNPLVPLNSAVDL  175 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhcccccc----cc--chhccccccccccccCCccchhhhhc
Confidence            3445555667553  3444555678889986532111111111100    00  011122346788999854 3456677


Q ss_pred             CCCeEEEEECCCceeEe-ecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEE---eec-ccCeEEEEcCCC
Q 008467          295 YDGQARIWSTNGDLKCT-LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF---EFH-SGPTLDVDWRNN  369 (564)
Q Consensus       295 ~dg~i~vw~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~---~~~-~~~~~~~~~~~~  369 (564)
                      .|+.|++..+....... --.....+++++|+|.|++++.|-..|++..|-..-. .+..+   ... ...+.++.|...
T Consensus       176 ~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t  254 (1405)
T KOG3630|consen  176 SDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLST  254 (1405)
T ss_pred             cccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecc
Confidence            88999988754322111 1134567899999999999999999999999975432 22221   111 356889999888


Q ss_pred             ceEEEE
Q 008467          370 VSFATS  375 (564)
Q Consensus       370 ~~~~~~  375 (564)
                      ..|+..
T Consensus       255 ~eflvv  260 (1405)
T KOG3630|consen  255 QEFLVV  260 (1405)
T ss_pred             eeEEEE
Confidence            777654

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=92.80  E-value=0.43  Score=30.46  Aligned_cols=31  Identities=26%  Similarity=0.321  Sum_probs=26.3

Q ss_pred             CCEEEEEEcCCC---CEEEEEeCCCcEEEEeCCC
Q 008467          493 EPVYSLAFSPTG---EYLASGSLDKSMHIWSLKE  523 (564)
Q Consensus       493 ~~i~~~~~spdg---~~lasgs~dg~i~iw~~~~  523 (564)
                      +.|.++.|||..   .+||.+-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            358899999854   5899888899999999985

It contains a characteristic DLL sequence motif.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=92.66  E-value=7.3  Score=39.09  Aligned_cols=101  Identities=14%  Similarity=0.236  Sum_probs=52.6

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-----e---eeeeccc----ccccEEEEEEccCCCCCCCCCCcEEEEEE
Q 008467          401 EVNCVKWDPTGSLLASCSDDVTAKIWNMKQD-----K---YVHDLRE----HSKEIYTIRWSPTGSGTNNPNQQLILASA  468 (564)
Q Consensus       401 ~i~~v~~~~~~~~las~s~dg~i~iwd~~~~-----~---~~~~~~~----~~~~i~~i~~~p~~~~~~~~~~~~~l~s~  468 (564)
                      ..+.+++.++| ++++ +.....++.|....     +   .+..+..    +......+.|.|+|.        +++..+
T Consensus        73 ~p~Gi~~~~~G-lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~--------LYv~~G  142 (367)
T TIGR02604        73 MVTGLAVAVGG-VYVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW--------LYFNHG  142 (367)
T ss_pred             CccceeEecCC-EEEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC--------EEEecc
Confidence            45678888887 5554 33333334344321     1   1122222    123356788888764        344444


Q ss_pred             eC------------------CCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC
Q 008467          469 SF------------------DSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL  512 (564)
Q Consensus       469 s~------------------dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~  512 (564)
                      +.                  .|.|.-++...++......++. ....++|+|+|+++++-..
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~r-np~Gl~~d~~G~l~~tdn~  203 (367)
T TIGR02604       143 NTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQ-NPYGHSVDSWGDVFFCDND  203 (367)
T ss_pred             cCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcC-CCccceECCCCCEEEEccC
Confidence            21                  1445555665444322223443 3478999999998876443

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.60  E-value=6.4  Score=41.83  Aligned_cols=186  Identities=12%  Similarity=0.194  Sum_probs=91.4

Q ss_pred             CcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceee---EecCCCcceEEEEECCCCCEE
Q 008467          338 KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIK---TFAGHQGEVNCVKWDPTGSLL  414 (564)
Q Consensus       338 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~---~~~~h~~~i~~v~~~~~~~~l  414 (564)
                      -.|+|++.. |..........+.++.+.|..+..++.-..+|+++++++-....-.   -+......|.-+.+..+|-.+
T Consensus        64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVav  142 (829)
T KOG2280|consen   64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAV  142 (829)
T ss_pred             eeEEEEecc-ccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEE
Confidence            457777753 3333333333447888999999999999999999999875432111   011112234444444455333


Q ss_pred             EEEeCCCcEEEEeCCCCeeeeeccc-ccccEEEEEEccCCCCCCCCCCcEEEEEEe-CCCeEEEEeCCCCe-EEEEEeCC
Q 008467          415 ASCSDDVTAKIWNMKQDKYVHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASAS-FDSTVKLWDVELGK-LLYSLNGH  491 (564)
Q Consensus       415 as~s~dg~i~iwd~~~~~~~~~~~~-~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~-~~~~~~~h  491 (564)
                        -..+|.+.+-.-........+.. ........+|.-....    .+...++--. ..+ ..+.-+..+. ....+...
T Consensus       143 --lt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~----~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~  215 (829)
T KOG2280|consen  143 --LTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPH----RQSTILLDVDVAVG-LHICQVEESRVQLHALSWP  215 (829)
T ss_pred             --EecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCC----CcceeEEeechhhh-hcccceecccccccccCCC
Confidence              33344544433222211222221 1111111233211100    0001111110 000 0111111111 11122212


Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe
Q 008467          492 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT  531 (564)
Q Consensus       492 ~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~  531 (564)
                      ...+..++.||++++||.-..+|.|.+-+....+....+.
T Consensus       216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence            2457889999999999999999999998887766666654

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.52  E-value=0.75  Score=42.18  Aligned_cols=64  Identities=20%  Similarity=0.310  Sum_probs=49.0

Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCCeEEEEE---------------ecCCCEEEEEEccCCCEEEEEEcCCcEEEEEeeC
Q 008467          500 FSPTGEYLASGSLDKSMHIWSLKEGKIVKTY---------------TGNGGIFEVCWNKEGDKIAACFANHTVCVLDFRM  564 (564)
Q Consensus       500 ~spdg~~lasgs~dg~i~iw~~~~~~~~~~~---------------~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~~  564 (564)
                      +..++.+|.+-+.+|.+++||+.+++.+...               .....|..+..+.+|.-|++ ..||...+||..|
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~-lsng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVT-LSNGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEE-EeCCCEEEecccc
Confidence            4557889999999999999999998864332               12345788888988987665 4678889998654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PRK10115 protease 2; Provisional

Probab=92.24  E-value=21  Score=39.21  Aligned_cols=235  Identities=7%  Similarity=0.038  Sum_probs=111.7

Q ss_pred             CeEEEEECCCCCEEEEEeCC-C----eEEEEECCCce--eEeecCCCCCEEEEEeCCCCCEEEEeeCC------CcEEEE
Q 008467          277 DVTTLDWNGEGTLLATGSYD-G----QARIWSTNGDL--KCTLSKHKGPIFSLKWNKKGDYLLTGSCD------KTAIVW  343 (564)
Q Consensus       277 ~V~~l~~s~~g~~l~sg~~d-g----~i~vw~~~~~~--~~~~~~h~~~V~~l~~~~~~~~l~s~s~D------~~v~iw  343 (564)
                      .+..+.|||||++|+.+... |    .+++-+..+..  ...+..   .-..+.|.++++.|+-...+      ..|..|
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h  204 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN---VEPSFVWANDSWTFYYVRKHPVTLLPYQVWRH  204 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC---cceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence            46778999999988876443 2    57777775332  112221   11569999999876655432      357777


Q ss_pred             ECCCc--ceeEEEeecccCeEEEEc-C-CCc-eEEEE--eCCCeEEEEEcC--CCceeeEecCCCcceEEEEECCCCCEE
Q 008467          344 DVKTE--EWKQQFEFHSGPTLDVDW-R-NNV-SFATS--STDNMIYVCKIG--ENRPIKTFAGHQGEVNCVKWDPTGSLL  414 (564)
Q Consensus       344 d~~~~--~~~~~~~~~~~~~~~~~~-~-~~~-~~~~~--~~d~~i~~~~~~--~~~~~~~~~~h~~~i~~v~~~~~~~~l  414 (564)
                      ++.++  +-...+........-..+ . +.. .++.+  ..++.+++++..  ...+...+..-.+....+. +..+.++
T Consensus       205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly  283 (686)
T PRK10115        205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFY  283 (686)
T ss_pred             ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEE
Confidence            88777  333334322222221112 2 222 23222  234567777742  2222212211111111222 2223333


Q ss_pred             EEEeC-CCcEEEE--eCCCCeeeeecccc-c-ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-CeEEEEE
Q 008467          415 ASCSD-DVTAKIW--NMKQDKYVHDLREH-S-KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-GKLLYSL  488 (564)
Q Consensus       415 as~s~-dg~i~iw--d~~~~~~~~~~~~~-~-~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~  488 (564)
                      +.... ....+|.  ++.....-..+..+ . ..+..+.+..+          .++++...+|.-+++-+.. +..+..+
T Consensus       284 ~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~----------~l~~~~~~~g~~~l~~~~~~~~~~~~l  353 (686)
T PRK10115        284 LRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTD----------WLVVEERQRGLTSLRQINRKTREVIGI  353 (686)
T ss_pred             EEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECC----------EEEEEEEeCCEEEEEEEcCCCCceEEe
Confidence            32222 1233333  33311111233334 2 35666666522          3677777787766654432 2333443


Q ss_pred             e-CCCCCEEEEEEc--CCC-CEEEEEeC---CCcEEEEeCCCCe
Q 008467          489 N-GHREPVYSLAFS--PTG-EYLASGSL---DKSMHIWSLKEGK  525 (564)
Q Consensus       489 ~-~h~~~i~~~~~s--pdg-~~lasgs~---dg~i~iw~~~~~~  525 (564)
                      . .....+..+.++  +++ .++++.+.   -+.+..+|..+++
T Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        354 AFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             cCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence            3 222223334455  444 34444432   3678899988765

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.99  E-value=11  Score=35.39  Aligned_cols=140  Identities=16%  Similarity=0.214  Sum_probs=86.4

Q ss_pred             EEEECCCCCE-EEEEeCCCc-EEEEeCCCCeeeeecccccccEE--EEEEccCCCCCCCCCCcEEEEEEe----CCCeEE
Q 008467          404 CVKWDPTGSL-LASCSDDVT-AKIWNMKQDKYVHDLREHSKEIY--TIRWSPTGSGTNNPNQQLILASAS----FDSTVK  475 (564)
Q Consensus       404 ~v~~~~~~~~-las~s~dg~-i~iwd~~~~~~~~~~~~~~~~i~--~i~~~p~~~~~~~~~~~~~l~s~s----~dg~i~  475 (564)
                      .++++|..+. ++-+-.-|+ ..++|.........+....+.-+  .-.|+|+|.        ++.+|-.    .-|.|-
T Consensus        72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~--------~LYATEndfd~~rGViG  143 (366)
T COG3490          72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGR--------LLYATENDFDPNRGVIG  143 (366)
T ss_pred             CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCc--------EEEeecCCCCCCCceEE
Confidence            3677776543 555666665 46788877665544432222111  124666664        3333321    136799


Q ss_pred             EEeCCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEeC------C------------CcEEEEeCCCCeEEEEEec----
Q 008467          476 LWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGSL------D------------KSMHIWSLKEGKIVKTYTG----  532 (564)
Q Consensus       476 iwd~~~~-~~~~~~~~h~~~i~~~~~spdg~~lasgs~------d------------g~i~iw~~~~~~~~~~~~~----  532 (564)
                      |||.+.+ +.+.++..|.-.-..+.|.+||+.|+.+..      |            -++.+.|..+|.++....-    
T Consensus       144 vYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l  223 (366)
T COG3490         144 VYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASL  223 (366)
T ss_pred             EEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhh
Confidence            9998854 446678888877889999999999987643      1            2344555555655433221    


Q ss_pred             -CCCEEEEEEccCCCEEEEE
Q 008467          533 -NGGIFEVCWNKEGDKIAAC  551 (564)
Q Consensus       533 -~~~i~~~~w~~~g~~la~~  551 (564)
                       .-+|..++..+||+.++.|
T Consensus       224 ~~lSiRHld~g~dgtvwfgc  243 (366)
T COG3490         224 RQLSIRHLDIGRDGTVWFGC  243 (366)
T ss_pred             hhcceeeeeeCCCCcEEEEE
Confidence             2357789999999988877

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=91.73  E-value=2.9  Score=44.49  Aligned_cols=133  Identities=16%  Similarity=0.307  Sum_probs=71.7

Q ss_pred             EEEEECCCCCEEEEEeCC----CeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCC-----cEEEEECCCcc
Q 008467          279 TTLDWNGEGTLLATGSYD----GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK-----TAIVWDVKTEE  349 (564)
Q Consensus       279 ~~l~~s~~g~~l~sg~~d----g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~-----~v~iwd~~~~~  349 (564)
                      +.+.|-.|..+.+.+...    ..+|+|...|.+-..-...++.=..+.|-|+|..++|-..||     .|+++.. +|-
T Consensus       205 ~~i~wrgD~~y~~v~r~Ee~prra~rvysreg~lds~sep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfEr-NGL  283 (1243)
T COG5290         205 KIIFWRGDTEYNLVGRSEERPRRAFRVYSREGQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFER-NGL  283 (1243)
T ss_pred             eEEEEccCcceeeecchhcccccceeeeccccccccccCCcccchhccccccCCceeeeeccCCCCCcceEEEEcc-CCc
Confidence            456788888888877653    467888877765443333444445589999999999987665     3555542 221


Q ss_pred             eeEEEeec---ccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCC
Q 008467          350 WKQQFEFH---SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS  412 (564)
Q Consensus       350 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~  412 (564)
                      ....|...   ...+...+|.-...+......+.+.+|..++-.-.....-.-..+.-+.|+|...
T Consensus       284 rHGef~lr~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~  349 (1243)
T COG5290         284 RHGEFDLRVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEEK  349 (1243)
T ss_pred             ccCCccccCCchhhhhhhhhhHHHHHHHHhhcceEEEEEccceEEEEEEeecCCCcceeeeccccC
Confidence            11112111   1123344554444333444566677776544221111111122355677887654

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=91.67  E-value=3.2  Score=45.25  Aligned_cols=69  Identities=22%  Similarity=0.293  Sum_probs=48.9

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEeCCC----------CeE--E-EEEe---------cCCCEEEEEEccCC---CEE
Q 008467          494 PVYSLAFSPTGEYLASGSLDKSMHIWSLKE----------GKI--V-KTYT---------GNGGIFEVCWNKEG---DKI  548 (564)
Q Consensus       494 ~i~~~~~spdg~~lasgs~dg~i~iw~~~~----------~~~--~-~~~~---------~~~~i~~~~w~~~g---~~l  548 (564)
                      .|..|.+||+|++||..|..|. .|-.+..          |+.  . +++.         ....|..+.|+|.+   .+|
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            4788999999999999998774 4444321          111  1 1221         12347789999974   799


Q ss_pred             EEEEcCCcEEEEEee
Q 008467          549 AACFANHTVCVLDFR  563 (564)
Q Consensus       549 a~~~~~~~v~v~~~~  563 (564)
                      ++=..|+.+++||+.
T Consensus       165 ~vLtsdn~lR~y~~~  179 (717)
T PF10168_consen  165 VVLTSDNTLRLYDIS  179 (717)
T ss_pred             EEEecCCEEEEEecC
Confidence            999999999999974

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PRK10115 protease 2; Provisional

Probab=91.52  E-value=25  Score=38.61  Aligned_cols=193  Identities=9%  Similarity=0.069  Sum_probs=97.9

Q ss_pred             cceEEEEECCCCCEEEEEECC-----CcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEE
Q 008467          217 SEVCACAWSPAGSLLASGSGD-----STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA  291 (564)
Q Consensus       217 ~~V~~~~~sp~~~~lasgs~D-----~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~  291 (564)
                      -.+..+.|||+|++||.+...     ..+++-|+.++......            .       ...-..++|++|++.|+
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~------------i-------~~~~~~~~w~~D~~~~~  187 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL------------L-------DNVEPSFVWANDSWTFY  187 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc------------c-------cCcceEEEEeeCCCEEE
Confidence            346678999999988875422     24677777655311100            0       01114589999998776


Q ss_pred             EEeCC------CeEEEEECCCc---eeEeecCCCCCEE-EEEeCCCCCEEEEeeC---CCcEEEEEC--CCcceeEEEee
Q 008467          292 TGSYD------GQARIWSTNGD---LKCTLSKHKGPIF-SLKWNKKGDYLLTGSC---DKTAIVWDV--KTEEWKQQFEF  356 (564)
Q Consensus       292 sg~~d------g~i~vw~~~~~---~~~~~~~h~~~V~-~l~~~~~~~~l~s~s~---D~~v~iwd~--~~~~~~~~~~~  356 (564)
                      ....+      ..|+.++....   ....+........ .+..+.++.+++..+.   ++.+.+++.  .++.....+..
T Consensus       188 y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~  267 (686)
T PRK10115        188 YVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPR  267 (686)
T ss_pred             EEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEEC
Confidence            66543      25666666533   2223333333333 3333447777654443   346888884  23433222222


Q ss_pred             cccCeEEEEcCCCceEEEEeC---CCeEEEEEcCCCceeeEecCC-C-cceEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 008467          357 HSGPTLDVDWRNNVSFATSST---DNMIYVCKIGENRPIKTFAGH-Q-GEVNCVKWDPTGSLLASCSDDVTAKIWNMK  429 (564)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~---d~~i~~~~~~~~~~~~~~~~h-~-~~i~~v~~~~~~~~las~s~dg~i~iwd~~  429 (564)
                      .......+.-..+..++....   ...|...++.....-..+..+ . ..|..+.+. ...++++...+|.-+++-+.
T Consensus       268 ~~~~~~~~~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~  344 (686)
T PRK10115        268 RKDHEYSLDHYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN  344 (686)
T ss_pred             CCCCEEEEEeCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence            222222222122333333222   223444444421222333344 3 367778887 44667777778876666543

>PHA02790 Kelch-like protein; Provisional

Probab=91.44  E-value=12  Score=38.99  Aligned_cols=103  Identities=11%  Similarity=0.057  Sum_probs=50.3

Q ss_pred             CEEEEeeCC-----CcEEEEECCCcceeEEEeecccC-eEEEEcCCCceEEEEeCC--CeEEEEEcCCCc--eeeEecCC
Q 008467          329 DYLLTGSCD-----KTAIVWDVKTEEWKQQFEFHSGP-TLDVDWRNNVSFATSSTD--NMIYVCKIGENR--PIKTFAGH  398 (564)
Q Consensus       329 ~~l~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d--~~i~~~~~~~~~--~~~~~~~h  398 (564)
                      ..++.|+.+     .++..||+.++.|...-...... .......++..++.|+.+  ..+..|+...+.  .+..+...
T Consensus       273 ~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~  352 (480)
T PHA02790        273 VVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKP  352 (480)
T ss_pred             EEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCC
Confidence            334555543     25677888887776533222111 122233456666776643  345566654332  11111111


Q ss_pred             CcceEEEEECCCCCEEEEEeCCC---cEEEEeCCCCee
Q 008467          399 QGEVNCVKWDPTGSLLASCSDDV---TAKIWNMKQDKY  433 (564)
Q Consensus       399 ~~~i~~v~~~~~~~~las~s~dg---~i~iwd~~~~~~  433 (564)
                      ......+.+  +|++.+.|+.++   .+..||..+...
T Consensus       353 r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W  388 (480)
T PHA02790        353 RCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQW  388 (480)
T ss_pred             CcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEE
Confidence            111122222  577778877654   466788766543

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=91.39  E-value=1.1  Score=28.26  Aligned_cols=41  Identities=20%  Similarity=0.239  Sum_probs=30.3

Q ss_pred             CCCCEEEEEe-CCCcEEEEeCCCCeEEEEEecCCCEEEEEEc
Q 008467          502 PTGEYLASGS-LDKSMHIWSLKEGKIVKTYTGNGGIFEVCWN  542 (564)
Q Consensus       502 pdg~~lasgs-~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~  542 (564)
                      |++++|.++. .+++|.++|..+++.+..+........++|+
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~~   42 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAVS   42 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence            6787776554 5789999999999988887765445566553

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PHA03098 kelch-like protein; Provisional

Probab=90.90  E-value=11  Score=39.90  Aligned_cols=144  Identities=9%  Similarity=0.059  Sum_probs=67.0

Q ss_pred             CCCEEEEEeCCC------eEEEEECCCceeEeecCC---CCCEEEEEeCCCCCEEEEeeCC-----CcEEEEECCCccee
Q 008467          286 EGTLLATGSYDG------QARIWSTNGDLKCTLSKH---KGPIFSLKWNKKGDYLLTGSCD-----KTAIVWDVKTEEWK  351 (564)
Q Consensus       286 ~g~~l~sg~~dg------~i~vw~~~~~~~~~~~~h---~~~V~~l~~~~~~~~l~s~s~D-----~~v~iwd~~~~~~~  351 (564)
                      ++.+++.||.++      .+..||........+...   ......+.  -++..++.|+.+     ..+..||+.+..|.
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~  371 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWR  371 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence            456667776543      455666544332222211   11111222  245566667655     35778999888876


Q ss_pred             EEEeeccc-CeEEEEcCCCceEEEEeCC------CeEEEEEcCCCce--eeEecCCCcceEEEEECCCCCEEEEEeCCC-
Q 008467          352 QQFEFHSG-PTLDVDWRNNVSFATSSTD------NMIYVCKIGENRP--IKTFAGHQGEVNCVKWDPTGSLLASCSDDV-  421 (564)
Q Consensus       352 ~~~~~~~~-~~~~~~~~~~~~~~~~~~d------~~i~~~~~~~~~~--~~~~~~h~~~i~~v~~~~~~~~las~s~dg-  421 (564)
                      ..-..... ....+...++..++.++.+      +.+..|+..+++=  +..+........++.  .++++++.|+.++ 
T Consensus       372 ~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~  449 (534)
T PHA03098        372 EEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY--HDGKIYVIGGISYI  449 (534)
T ss_pred             eCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEE--ECCEEEEECCccCC
Confidence            53221111 1112222345566666521      3466777654321  111110011111222  2566667776432 


Q ss_pred             -------cEEEEeCCCCee
Q 008467          422 -------TAKIWNMKQDKY  433 (564)
Q Consensus       422 -------~i~iwd~~~~~~  433 (564)
                             .+.+||..+.+.
T Consensus       450 ~~~~~~~~v~~yd~~~~~W  468 (534)
T PHA03098        450 DNIKVYNIVESYNPVTNKW  468 (534)
T ss_pred             CCCcccceEEEecCCCCce
Confidence                   267778766543

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=90.81  E-value=20  Score=36.32  Aligned_cols=142  Identities=15%  Similarity=0.165  Sum_probs=81.9

Q ss_pred             CCCEEEEEeCCCeEEEEECCCce-----eEeecCCCCCEEEEEeCC----CCCEEEEeeCCCcEEEEECCC--cc-----
Q 008467          286 EGTLLATGSYDGQARIWSTNGDL-----KCTLSKHKGPIFSLKWNK----KGDYLLTGSCDKTAIVWDVKT--EE-----  349 (564)
Q Consensus       286 ~g~~l~sg~~dg~i~vw~~~~~~-----~~~~~~h~~~V~~l~~~~----~~~~l~s~s~D~~v~iwd~~~--~~-----  349 (564)
                      +...+++|+..|.+|||+.....     ...-..-..||..+..-+    .....++.=.-+.+.+|.+..  +.     
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~  115 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN  115 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence            34689999999999999975421     111123457888876532    223334445567788887621  11     


Q ss_pred             ---eeEEEeeccc-CeEEE---EcC---CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC
Q 008467          350 ---WKQQFEFHSG-PTLDV---DWR---NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD  419 (564)
Q Consensus       350 ---~~~~~~~~~~-~~~~~---~~~---~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~  419 (564)
                         +...++.+-. ....+   .+.   ....+..-+.||.+.+++-+.-.-...+.+ ---.-.+.|.+....|++++.
T Consensus       116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ss  194 (418)
T PF14727_consen  116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASS  194 (418)
T ss_pred             EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence               1111221111 11111   221   135567788999999988655332222322 112234677788888999999


Q ss_pred             CCcEEEEeC
Q 008467          420 DVTAKIWNM  428 (564)
Q Consensus       420 dg~i~iwd~  428 (564)
                      +..+..|..
T Consensus       195 s~~l~~Yky  203 (418)
T PF14727_consen  195 SWTLECYKY  203 (418)
T ss_pred             ceeEEEecH
Confidence            999988874

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=90.58  E-value=4  Score=41.19  Aligned_cols=140  Identities=12%  Similarity=0.171  Sum_probs=83.5

Q ss_pred             eEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCC--------CEEEEEeCCCcEEEEeCCCCe-e--eeeccc
Q 008467          371 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG--------SLLASCSDDVTAKIWNMKQDK-Y--VHDLRE  439 (564)
Q Consensus       371 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~--------~~las~s~dg~i~iwd~~~~~-~--~~~~~~  439 (564)
                      .|..++....++-.|+.-++.+..+.-|..-  -+.|.|+.        +.|+--|..+..| .|.+-.. .  +...+ 
T Consensus       482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFr-IDPR~~gNKi~v~esK-  557 (776)
T COG5167         482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFR-IDPRARGNKIKVVESK-  557 (776)
T ss_pred             EEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEE-ecccccCCceeeeeeh-
Confidence            4455666677888888888888888877665  46777753        3344444444333 3543221 1  11111 


Q ss_pred             ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 008467          440 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIW  519 (564)
Q Consensus       440 ~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw  519 (564)
                        ...+.-.|+..+.     ...-++|.||.-|.||+||--.-+....+.+....|-.|..+.+|++|.+.+.. .+.+-
T Consensus       558 --dY~tKn~Fss~~t-----TesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~  629 (776)
T COG5167         558 --DYKTKNKFSSGMT-----TESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLT  629 (776)
T ss_pred             --hcccccccccccc-----ccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEE
Confidence              1122223332211     112379999999999999954223333455667789999999999998765543 46666


Q ss_pred             eCC
Q 008467          520 SLK  522 (564)
Q Consensus       520 ~~~  522 (564)
                      |++
T Consensus       630 d~~  632 (776)
T COG5167         630 DVP  632 (776)
T ss_pred             ecc
Confidence            653

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=90.52  E-value=0.039  Score=54.61  Aligned_cols=132  Identities=14%  Similarity=0.255  Sum_probs=91.0

Q ss_pred             EEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCC--CceEEEEeCCCeEEEEEcCCCceeeEecC
Q 008467          320 FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN--NVSFATSSTDNMIYVCKIGENRPIKTFAG  397 (564)
Q Consensus       320 ~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~  397 (564)
                      ....|-|.+..++.++.+..+..||-... ..... ...+..++++|.-  +...+.....+.+++|++......+.-.+
T Consensus        38 i~~~w~~e~~nlavaca~tiv~~YD~agq-~~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g  115 (615)
T KOG2247|consen   38 IIHRWRPEGHNLAVACANTIVIYYDKAGQ-VILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG  115 (615)
T ss_pred             ceeeEecCCCceehhhhhhHHHhhhhhcc-eeccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence            45678898888999999999999985432 22111 1123345666643  34556677888999999876543221112


Q ss_pred             CCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCC
Q 008467          398 HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG  453 (564)
Q Consensus       398 h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~  453 (564)
                      -+..-.-+.|++.+..++.+-..|.++|++..+.+.+..+-.|...+++++|.+.+
T Consensus       116 g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd  171 (615)
T KOG2247|consen  116 GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED  171 (615)
T ss_pred             CcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc
Confidence            22222237899999999999999999999988877665555588999999998865

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=90.15  E-value=9.5  Score=31.47  Aligned_cols=120  Identities=16%  Similarity=0.100  Sum_probs=72.4

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEeCCCCe--------eeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEE
Q 008467          404 CVKWDPTGSLLASCSDDVTAKIWNMKQDK--------YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVK  475 (564)
Q Consensus       404 ~v~~~~~~~~las~s~dg~i~iwd~~~~~--------~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~  475 (564)
                      .-+|......|+.++.-|+|.|.+.....        .+..+ .-...|++++-.|-..    ....-.|+.|+ ..++.
T Consensus         3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~----~~~~D~LliGt-~t~ll   76 (136)
T PF14781_consen    3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKP----DDGRDCLLIGT-QTSLL   76 (136)
T ss_pred             EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCC----CCCcCEEEEec-cceEE
Confidence            34566666778888888999999865332        22222 2345677776554322    11122455565 46799


Q ss_pred             EEeCCCCeEEEEEeCCCCCEEEEEEcC---CCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q 008467          476 LWDVELGKLLYSLNGHREPVYSLAFSP---TGEYLASGSLDKSMHIWSLKEGKIVKTY  530 (564)
Q Consensus       476 iwd~~~~~~~~~~~~h~~~i~~~~~sp---dg~~lasgs~dg~i~iw~~~~~~~~~~~  530 (564)
                      .||+.....++.-. -...|+++.+-.   ...-|+..+.+..|.-||....++.++.
T Consensus        77 aYDV~~N~d~Fyke-~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV  133 (136)
T PF14781_consen   77 AYDVENNSDLFYKE-VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV  133 (136)
T ss_pred             EEEcccCchhhhhh-CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence            99998777665433 235677777632   2234555555778888887766665554

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=90.14  E-value=21  Score=35.45  Aligned_cols=49  Identities=24%  Similarity=0.492  Sum_probs=25.5

Q ss_pred             eEEEEeCCCCeEEEE---------EeCCCC-CEEEEEEcCCCCEEE-EEeCCCcEEEEeC
Q 008467          473 TVKLWDVELGKLLYS---------LNGHRE-PVYSLAFSPTGEYLA-SGSLDKSMHIWSL  521 (564)
Q Consensus       473 ~i~iwd~~~~~~~~~---------~~~h~~-~i~~~~~spdg~~la-sgs~dg~i~iw~~  521 (564)
                      -|+++++..++...-         +.++.. .=-...|||||++++ +....|...||-+
T Consensus       321 ~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v  380 (386)
T PF14583_consen  321 WIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV  380 (386)
T ss_dssp             EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred             EEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence            567788887664311         111111 124578999999875 5556777777754

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=90.13  E-value=11  Score=33.63  Aligned_cols=171  Identities=18%  Similarity=0.205  Sum_probs=81.8

Q ss_pred             CCCEEEEEE--CCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccc-cccCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 008467          227 AGSLLASGS--GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGR-TNEKSKDVTTLDWNGEGTLLATGSYDGQARIWS  303 (564)
Q Consensus       227 ~~~~lasgs--~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~  303 (564)
                      +|.++.+.+  +.+.|++|++.+++........+.      ...+. ...-...+..+.|           .+|...++|
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~------~~FgEGit~~gd~~y~LTw-----------~egvaf~~d  117 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPD------TVFGEGITKLGDYFYQLTW-----------KEGVAFKYD  117 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCc------cccccceeeccceEEEEEe-----------ccceeEEEC
Confidence            456777766  456899999988764321111100      00000 0001122333333           456666776


Q ss_pred             CCCce-eEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEee--cccC---eEEEEcCCCceEEEEeC
Q 008467          304 TNGDL-KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF--HSGP---TLDVDWRNNVSFATSST  377 (564)
Q Consensus       304 ~~~~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~  377 (564)
                      .+... ...+ .-.+.=++++  .++..|+.++...+++.=|+++.........  ...|   ...+.|.+...++-.=.
T Consensus       118 ~~t~~~lg~~-~y~GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~  194 (262)
T COG3823         118 ADTLEELGRF-SYEGEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQ  194 (262)
T ss_pred             hHHhhhhccc-ccCCcceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeee
Confidence            54321 1111 1233445554  4555577666556677667766544333222  1222   23445555554443333


Q ss_pred             CCeEEEEEcCCCceeeEe------------cCCCcceEEEEECCCC-CEEEEE
Q 008467          378 DNMIYVCKIGENRPIKTF------------AGHQGEVNCVKWDPTG-SLLASC  417 (564)
Q Consensus       378 d~~i~~~~~~~~~~~~~~------------~~h~~~i~~v~~~~~~-~~las~  417 (564)
                      ...|...+..+++.+..+            ..|.+..+.+++.|++ ++++||
T Consensus       195 t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         195 TTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             ecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            333333344444433222            2344567889999887 556665

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.05  E-value=11  Score=37.58  Aligned_cols=123  Identities=16%  Similarity=0.300  Sum_probs=76.5

Q ss_pred             eeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeee----eecccccccEEEEEEccCCCCCCCCCCcEEEE
Q 008467          391 PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV----HDLREHSKEIYTIRWSPTGSGTNNPNQQLILA  466 (564)
Q Consensus       391 ~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~----~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~  466 (564)
                      |+..-....++|.++.|++|.+.+|.--.|.+|.+++....+..    ++-+..+..|....|....          -+|
T Consensus        58 piSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~----------e~A  127 (657)
T KOG2377|consen   58 PISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSST----------EIA  127 (657)
T ss_pred             CceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCe----------eEE
Confidence            33333445679999999999999999999999999987544332    2223344568888997652          133


Q ss_pred             EEeCCCeEEEEeCCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCCcEEEEeCCCC
Q 008467          467 SASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGS--LDKSMHIWSLKEG  524 (564)
Q Consensus       467 s~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~~~~spdg~~lasgs--~dg~i~iw~~~~~  524 (564)
                      --+.. -+-+|-+... +.+...+.|...|+--.|.|+.+.+..++  ..+++.=+.++++
T Consensus       128 ~i~~~-G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~  187 (657)
T KOG2377|consen  128 FITDQ-GIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG  187 (657)
T ss_pred             EEecC-CeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence            33322 3556654422 23344556777888888998887654433  2334444444444

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=90.00  E-value=1.4  Score=28.15  Aligned_cols=31  Identities=29%  Similarity=0.514  Sum_probs=25.9

Q ss_pred             cceEEEEECCCC---CEEEEEeCCCcEEEEeCCC
Q 008467          400 GEVNCVKWDPTG---SLLASCSDDVTAKIWNMKQ  430 (564)
Q Consensus       400 ~~i~~v~~~~~~---~~las~s~dg~i~iwd~~~  430 (564)
                      +.|.+++|+|..   .+|+.+-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            357899999855   4888888889999999985

It contains a characteristic DLL sequence motif.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.93  E-value=5.7  Score=40.33  Aligned_cols=94  Identities=11%  Similarity=0.080  Sum_probs=52.5

Q ss_pred             CCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEec
Q 008467          317 GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA  396 (564)
Q Consensus       317 ~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~  396 (564)
                      -.|..+..++.|..++-.+.+|.+.++=.+....-..++.....+.+-.+.-+..                      .|.
T Consensus       104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~----------------------~ft  161 (741)
T KOG4460|consen  104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAER----------------------FFT  161 (741)
T ss_pred             EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccce----------------------eec
Confidence            3567788899999998888888776653222111111111111111111111111                      111


Q ss_pred             C-CCcceEEEEECCCC---CEEEEEeCCCcEEEEeCCCCe
Q 008467          397 G-HQGEVNCVKWDPTG---SLLASCSDDVTAKIWNMKQDK  432 (564)
Q Consensus       397 ~-h~~~i~~v~~~~~~---~~las~s~dg~i~iwd~~~~~  432 (564)
                      . ..-.+..++|+|+.   ..|..-+.|.+||+||.....
T Consensus       162 ss~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~t  201 (741)
T KOG4460|consen  162 SSTSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPT  201 (741)
T ss_pred             cCCceeeeeccccCCccCCceEEEEecCcEEEEEecCCcc
Confidence            1 11246678999976   567778889999999986544

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=89.81  E-value=2.6  Score=37.09  Aligned_cols=36  Identities=28%  Similarity=0.577  Sum_probs=29.6

Q ss_pred             cEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC
Q 008467          443 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL  481 (564)
Q Consensus       443 ~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~  481 (564)
                      .+..++|||.|-+   ++...+|++...+|.|.||....
T Consensus        87 ~vv~~aWSP~Gl~---~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLG---PNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCC---CCCceEEEEEcCCCeEEEEecCC
Confidence            6889999998863   44578999999999999997653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.21  E-value=35  Score=36.64  Aligned_cols=52  Identities=19%  Similarity=0.307  Sum_probs=40.7

Q ss_pred             CCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC
Q 008467          295 YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT  347 (564)
Q Consensus       295 ~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~  347 (564)
                      .--.|+|++..|.+...+.-..+++.++.|+.+. .|+....||++.+|++..
T Consensus        62 a~~~I~If~~sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~g  113 (829)
T KOG2280|consen   62 ARPYIRIFNISGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLG  113 (829)
T ss_pred             cceeEEEEeccccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecch
Confidence            3356899999998877665555588899999765 567778999999999753

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=88.80  E-value=2  Score=37.72  Aligned_cols=27  Identities=15%  Similarity=0.343  Sum_probs=23.3

Q ss_pred             CEEEEEEccCC------CEEEEEEcCCcEEEEE
Q 008467          535 GIFEVCWNKEG------DKIAACFANHTVCVLD  561 (564)
Q Consensus       535 ~i~~~~w~~~g------~~la~~~~~~~v~v~~  561 (564)
                      .+..++|||.|      ..||+...++.|.||.
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~  119 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYG  119 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEe
Confidence            57899999976      4899999999999984

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.43  E-value=9.4  Score=38.86  Aligned_cols=70  Identities=16%  Similarity=0.293  Sum_probs=49.1

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEeC---------CCCeEEEEEe----------cCCC--EEEEEEccCC---CEEE
Q 008467          494 PVYSLAFSPTGEYLASGSLDKSMHIWSL---------KEGKIVKTYT----------GNGG--IFEVCWNKEG---DKIA  549 (564)
Q Consensus       494 ~i~~~~~spdg~~lasgs~dg~i~iw~~---------~~~~~~~~~~----------~~~~--i~~~~w~~~g---~~la  549 (564)
                      .|..+..|+.|..+|..|.+|.+.++-.         ++|+.+-+..          ....  +.-.+|+|+.   .+|.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            3677889999999999999997666542         3444322211          1222  3457899987   5888


Q ss_pred             EEEcCCcEEEEEee
Q 008467          550 ACFANHTVCVLDFR  563 (564)
Q Consensus       550 ~~~~~~~v~v~~~~  563 (564)
                      .-..|..++|||+.
T Consensus       185 iL~sdnviRiy~lS  198 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLS  198 (741)
T ss_pred             EEecCcEEEEEecC
Confidence            88889999999864

>PHA02790 Kelch-like protein; Provisional

Probab=88.31  E-value=35  Score=35.68  Aligned_cols=142  Identities=9%  Similarity=0.022  Sum_probs=64.2

Q ss_pred             CCCEEEEEeCCC-----eEEEEECCCceeEeecCCCCC--EEEEEeCCCCCEEEEeeCC--CcEEEEECCCcceeEEEee
Q 008467          286 EGTLLATGSYDG-----QARIWSTNGDLKCTLSKHKGP--IFSLKWNKKGDYLLTGSCD--KTAIVWDVKTEEWKQQFEF  356 (564)
Q Consensus       286 ~g~~l~sg~~dg-----~i~vw~~~~~~~~~~~~h~~~--V~~l~~~~~~~~l~s~s~D--~~v~iwd~~~~~~~~~~~~  356 (564)
                      ++.+++.||.++     .+..||.....-..+..-..+  -.++. .-++...+.|+.+  .++..||..+++|...-..
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l  349 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL  349 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence            345667777543     455666544322222111111  01122 1245555666653  4688899888777653322


Q ss_pred             cccC-eEEEEcCCCceEEEEeCCC---eEEEEEcCCCcee--eEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 008467          357 HSGP-TLDVDWRNNVSFATSSTDN---MIYVCKIGENRPI--KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ  430 (564)
Q Consensus       357 ~~~~-~~~~~~~~~~~~~~~~~d~---~i~~~~~~~~~~~--~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~  430 (564)
                      .... ...+.-.++..++.|+.++   .+..|+..++.=.  ..+.-.......+.  -++++.+.|+   .+.+||..+
T Consensus       350 ~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~--~~~~IYv~GG---~~e~ydp~~  424 (480)
T PHA02790        350 LKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALV--FGRRLFLVGR---NAEFYCESS  424 (480)
T ss_pred             CCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEE--ECCEEEEECC---ceEEecCCC
Confidence            2111 1222334556666666443   3445554433210  00000011111222  2466666663   466788765


Q ss_pred             Cee
Q 008467          431 DKY  433 (564)
Q Consensus       431 ~~~  433 (564)
                      .+.
T Consensus       425 ~~W  427 (480)
T PHA02790        425 NTW  427 (480)
T ss_pred             CcE
Confidence            543

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=88.30  E-value=27  Score=34.28  Aligned_cols=142  Identities=22%  Similarity=0.338  Sum_probs=78.1

Q ss_pred             cceEEEEECCCCCEEEEEeCCCc------EEEEeCCCC----eeee-----ecccccc--------cEEEEEEccCCCCC
Q 008467          400 GEVNCVKWDPTGSLLASCSDDVT------AKIWNMKQD----KYVH-----DLREHSK--------EIYTIRWSPTGSGT  456 (564)
Q Consensus       400 ~~i~~v~~~~~~~~las~s~dg~------i~iwd~~~~----~~~~-----~~~~~~~--------~i~~i~~~p~~~~~  456 (564)
                      +.++.+.+.+++..+++.|++|.      +..+++...    ..+.     .++...+        ..-+|++.+++.  
T Consensus        20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~--   97 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS--   97 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC--
Confidence            45678888876667777888887      544444320    0010     1111111        112344433332  


Q ss_pred             CCCCCcEEEEEEeCC------CeEEEEeCCCCeEEEEEe---------------CCCCCEEEEEEcCCCCEEEEEeC---
Q 008467          457 NNPNQQLILASASFD------STVKLWDVELGKLLYSLN---------------GHREPVYSLAFSPTGEYLASGSL---  512 (564)
Q Consensus       457 ~~~~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~---------------~h~~~i~~~~~spdg~~lasgs~---  512 (564)
                             ++++.=.+      ..|+-++.. |+.+..+.               .......+|+++|||+.|.++..   
T Consensus        98 -------~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l  169 (326)
T PF13449_consen   98 -------FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPL  169 (326)
T ss_pred             -------EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccc
Confidence                   44444444      567777765 65543331               12346889999999996655432   


Q ss_pred             --CC-----------cEEEEeCCC-CeEEEEE--e--------cCCCEEEEEEccCCCEEEEE
Q 008467          513 --DK-----------SMHIWSLKE-GKIVKTY--T--------GNGGIFEVCWNKEGDKIAAC  551 (564)
Q Consensus       513 --dg-----------~i~iw~~~~-~~~~~~~--~--------~~~~i~~~~w~~~g~~la~~  551 (564)
                        |+           +|..||..+ +...+.|  .        ...+|.++.+-++++.|+.-
T Consensus       170 ~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE  232 (326)
T PF13449_consen  170 KQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE  232 (326)
T ss_pred             cCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence              22           244455554 3333332  2        23568899999999988765

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=87.77  E-value=22  Score=38.36  Aligned_cols=110  Identities=10%  Similarity=0.159  Sum_probs=72.9

Q ss_pred             cCCCceEEEEeCCCeEEEEEcCC-------C-------------ceeeEecCCCcceEEEEEC--CCCCEEEEEeCCCcE
Q 008467          366 WRNNVSFATSSTDNMIYVCKIGE-------N-------------RPIKTFAGHQGEVNCVKWD--PTGSLLASCSDDVTA  423 (564)
Q Consensus       366 ~~~~~~~~~~~~d~~i~~~~~~~-------~-------------~~~~~~~~h~~~i~~v~~~--~~~~~las~s~dg~i  423 (564)
                      |.+...++.|.+||.|..|.+..       .             +|...+. -...+++++++  ...++||.++....|
T Consensus       111 lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~V  189 (717)
T PF08728_consen  111 LGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEV  189 (717)
T ss_pred             cCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceE
Confidence            44556788899999999997521       0             1221222 23468889998  888999999999999


Q ss_pred             EEEeCCCC--ee-eeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeC
Q 008467          424 KIWNMKQD--KY-VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV  479 (564)
Q Consensus       424 ~iwd~~~~--~~-~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~  479 (564)
                      .||-....  +. ...-..|..-|.+|.|-++...   +.+...|++++-.|.+-+|++
T Consensus       190 TVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d---~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  190 TVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLD---PNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEEEeccccccccccccccccCCCeeEeecCCCC---CccceEEEEEeccCcEEEEEE
Confidence            88865431  11 1111125556888888876532   222347888999999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=87.20  E-value=8.7  Score=38.94  Aligned_cols=150  Identities=16%  Similarity=0.187  Sum_probs=84.2

Q ss_pred             CCCCCEEE-EEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-CeEE
Q 008467          408 DPTGSLLA-SCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-GKLL  485 (564)
Q Consensus       408 ~~~~~~la-s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~  485 (564)
                      ..+.++|. .|..-..+.--|+..++.+.+...|...  -+.|.|..........+ .|+ |-.+..|.-.|.+. |..+
T Consensus       476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eq-tlv-GlS~~svFrIDPR~~gNKi  551 (776)
T COG5167         476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQ-TLV-GLSDYSVFRIDPRARGNKI  551 (776)
T ss_pred             cCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccc-eEE-eecccceEEecccccCCce
Confidence            33455544 4455556666677788888877777654  56677764322222222 243 43455555456553 3222


Q ss_pred             EEEeCCCCCEEEEEEcC----CCCEEEEEeCCCcEEEEeCCCCeEEEEEec-CCCEEEEEEccCCCEEEEEEcCCcEEEE
Q 008467          486 YSLNGHREPVYSLAFSP----TGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVL  560 (564)
Q Consensus       486 ~~~~~h~~~i~~~~~sp----dg~~lasgs~dg~i~iw~~~~~~~~~~~~~-~~~i~~~~w~~~g~~la~~~~~~~v~v~  560 (564)
                      .... ...-++.-.||.    ..-|+|.||..|-|++||.-.-.....+++ ...|-.+.-+.+|++|.+.+.+ .+-+.
T Consensus       552 ~v~e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~  629 (776)
T COG5167         552 KVVE-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLT  629 (776)
T ss_pred             eeee-ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEE
Confidence            2211 111122222332    346899999999999999643222222333 3457888899999977766555 56666


Q ss_pred             Eee
Q 008467          561 DFR  563 (564)
Q Consensus       561 ~~~  563 (564)
                      |++
T Consensus       630 d~~  632 (776)
T COG5167         630 DVP  632 (776)
T ss_pred             ecc
Confidence            664

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=86.89  E-value=3.5  Score=25.60  Aligned_cols=31  Identities=29%  Similarity=0.354  Sum_probs=19.8

Q ss_pred             eCCCCCEEEEEEcCCCCEEEEEe-CC--CcEEEE
Q 008467          489 NGHREPVYSLAFSPTGEYLASGS-LD--KSMHIW  519 (564)
Q Consensus       489 ~~h~~~i~~~~~spdg~~lasgs-~d--g~i~iw  519 (564)
                      ..........+|||||++|+-++ .+  |.-.||
T Consensus         5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            33445678889999999887544 44  555555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=86.43  E-value=7.7  Score=37.53  Aligned_cols=67  Identities=18%  Similarity=0.312  Sum_probs=50.4

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC-CCE-----EEEEEccCCCEEEEEEcCCcEEEEE
Q 008467          495 VYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGI-----FEVCWNKEGDKIAACFANHTVCVLD  561 (564)
Q Consensus       495 i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~-~~i-----~~~~w~~~g~~la~~~~~~~v~v~~  561 (564)
                      |++|...++|.+|+|.-.-..|.+.+.++|+++..+.+. ..-     ..++|..+-+.+-.+..++.|.|+|
T Consensus       146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFD  218 (299)
T PF14269_consen  146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFD  218 (299)
T ss_pred             eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEc
Confidence            788988899999999998899999999999999888665 221     2366666666665555556666664

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=85.85  E-value=8.7  Score=41.33  Aligned_cols=100  Identities=15%  Similarity=0.194  Sum_probs=68.3

Q ss_pred             EEEEEEeCCCeEEEEeCCC-------C-------------eEEEEEeCCCCCEEEEEEc--CCCCEEEEEeCCCcEEEEe
Q 008467          463 LILASASFDSTVKLWDVEL-------G-------------KLLYSLNGHREPVYSLAFS--PTGEYLASGSLDKSMHIWS  520 (564)
Q Consensus       463 ~~l~s~s~dg~i~iwd~~~-------~-------------~~~~~~~~h~~~i~~~~~s--pdg~~lasgs~dg~i~iw~  520 (564)
                      .+|+.|..||.|.+|.++.       .             ++.+.+. ....+++++++  ...++||+++....|.||-
T Consensus       115 EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFa  193 (717)
T PF08728_consen  115 EVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFA  193 (717)
T ss_pred             eEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEE
Confidence            3788899999999996521       0             0112222 23468899998  7788999888888888876


Q ss_pred             CCCC--eE--EEEEecCCCEEEEEEccCC---C---EEEEEEcCCcEEEEEee
Q 008467          521 LKEG--KI--VKTYTGNGGIFEVCWNKEG---D---KIAACFANHTVCVLDFR  563 (564)
Q Consensus       521 ~~~~--~~--~~~~~~~~~i~~~~w~~~g---~---~la~~~~~~~v~v~~~~  563 (564)
                      ....  +.  .........|.+|+|-++.   .   +|++++-.|.+.+|+|+
T Consensus       194 f~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~  246 (717)
T PF08728_consen  194 FALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK  246 (717)
T ss_pred             EeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence            5431  11  1122334567888886643   2   88899999999999883

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=84.61  E-value=52  Score=33.86  Aligned_cols=104  Identities=13%  Similarity=0.229  Sum_probs=55.4

Q ss_pred             CEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEE--Ee-----ecccCeEEEEcCCCc--------eEEEEe------
Q 008467          318 PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ--FE-----FHSGPTLDVDWRNNV--------SFATSS------  376 (564)
Q Consensus       318 ~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~--~~-----~~~~~~~~~~~~~~~--------~~~~~~------  376 (564)
                      .-+.|+|.|+|..|++--..|.|++++..++.....  +.     ...+-.+++.+.++.        .+++.+      
T Consensus        31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~  110 (454)
T TIGR03606        31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDK  110 (454)
T ss_pred             CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCC
Confidence            447899999997666654469999998655432111  11     112345666665442        334321      


Q ss_pred             ---CCCeEEEEEcCCC-----ceeeEecCC----CcceEEEEECCCCCEEEEEeCCC
Q 008467          377 ---TDNMIYVCKIGEN-----RPIKTFAGH----QGEVNCVKWDPTGSLLASCSDDV  421 (564)
Q Consensus       377 ---~d~~i~~~~~~~~-----~~~~~~~~h----~~~i~~v~~~~~~~~las~s~dg  421 (564)
                         ....|..+.+...     .....+.+-    ...-..|+|.|||+++++.++.+
T Consensus       111 ~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g  167 (454)
T TIGR03606       111 ELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQG  167 (454)
T ss_pred             CccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCC
Confidence               1234555554321     111122211    12234678999999887766654

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PRK13684 Ycf48-like protein; Provisional

Probab=84.42  E-value=44  Score=32.94  Aligned_cols=173  Identities=9%  Similarity=0.050  Sum_probs=88.4

Q ss_pred             eCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceee-EecCCCcceEEEEECCCCCE
Q 008467          335 SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIK-TFAGHQGEVNCVKWDPTGSL  413 (564)
Q Consensus       335 s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~-~~~~h~~~i~~v~~~~~~~~  413 (564)
                      +..|.|..=+-....|........+.+.++...++..++..+..|.++.-....+..-. ...+-...+.++.+.+++++
T Consensus       149 g~~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~  228 (334)
T PRK13684        149 TNVGAIYRTTDGGKNWEALVEDAAGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNL  228 (334)
T ss_pred             eccceEEEECCCCCCceeCcCCCcceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCE
Confidence            34444433322223344332222345566666666667777777766543111211111 11233456889999999988


Q ss_pred             EEEEeCCCcEEEEeCCCCeeeeeccc----ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEe
Q 008467          414 LASCSDDVTAKIWNMKQDKYVHDLRE----HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN  489 (564)
Q Consensus       414 las~s~dg~i~iwd~~~~~~~~~~~~----~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  489 (564)
                      ++.+ ..|.+++=....+..-.....    -...++++.+.|.+.         ++ .++.+|.|. .....|+.-....
T Consensus       229 ~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~---------~~-~~G~~G~v~-~S~d~G~tW~~~~  296 (334)
T PRK13684        229 WMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGE---------IW-AGGGNGTLL-VSKDGGKTWEKDP  296 (334)
T ss_pred             EEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCC---------EE-EEcCCCeEE-EeCCCCCCCeECC
Confidence            7655 557665322232221111111    123467788877543         33 455667654 3344344322221


Q ss_pred             ---CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008467          490 ---GHREPVYSLAFSPTGEYLASGSLDKSMHIWS  520 (564)
Q Consensus       490 ---~h~~~i~~~~~spdg~~lasgs~dg~i~iw~  520 (564)
                         .-....+.+.|..+++.+++ +..|.|.-|+
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~-G~~G~il~~~  329 (334)
T PRK13684        297 VGEEVPSNFYKIVFLDPEKGFVL-GQRGVLLRYV  329 (334)
T ss_pred             cCCCCCcceEEEEEeCCCceEEE-CCCceEEEec
Confidence               22235788888877777664 5567776664

>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]

Probab=84.04  E-value=0.57  Score=42.21  Aligned_cols=38  Identities=37%  Similarity=0.539  Sum_probs=34.8

Q ss_pred             CcCccchhhhhHHHHHhcCCceeeeccccccCCccCCC
Q 008467            3 SITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNI   40 (564)
Q Consensus         3 ~i~s~evn~Li~ryl~E~g~~~sa~~~~~E~~~~~~~~   40 (564)
                      ++..+++|.||--||--.||..+|-+|++|++|..+.+
T Consensus        23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~   60 (228)
T KOG2659|consen   23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSI   60 (228)
T ss_pred             CcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccC
Confidence            57889999999999999999999999999999998543

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=83.59  E-value=68  Score=34.46  Aligned_cols=72  Identities=19%  Similarity=0.329  Sum_probs=44.0

Q ss_pred             eEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCe
Q 008467          219 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQ  298 (564)
Q Consensus       219 V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~  298 (564)
                      ++++.-+|.|..+++|+.||.|++|++.......      +.            ....+-..+.|...|  |+++..|..
T Consensus        17 ~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qsk------i~------------~~~~p~~nlv~tnhg--l~~~tsdrr   76 (1636)
T KOG3616|consen   17 TTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSK------IC------------EEAKPKENLVFTNHG--LVTATSDRR   76 (1636)
T ss_pred             eeeeeecCCCceEEEEecCCcEEEEeecccchhh------hh------------hhcCCccceeeeccc--eEEEeccch
Confidence            5567778999999999999999999975432100      00            001112223333333  556667777


Q ss_pred             EEEEECCCceeE
Q 008467          299 ARIWSTNGDLKC  310 (564)
Q Consensus       299 i~vw~~~~~~~~  310 (564)
                      +.-|..+|....
T Consensus        77 ~la~~~dgvvqq   88 (1636)
T KOG3616|consen   77 ALAWKEDGVVQQ   88 (1636)
T ss_pred             hheeeccCcchh
Confidence            778877664433

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=83.54  E-value=33  Score=30.77  Aligned_cols=172  Identities=12%  Similarity=0.171  Sum_probs=78.0

Q ss_pred             CCCEEEEeeCC--CcEEEEECCCcceeEEEeecccCeE--EEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcce
Q 008467          327 KGDYLLTGSCD--KTAIVWDVKTEEWKQQFEFHSGPTL--DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEV  402 (564)
Q Consensus       327 ~~~~l~s~s~D--~~v~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i  402 (564)
                      +|.++.+.+.-  ..|++||+.+++.+..-......++  .+.-..+..+...=.++.-+.+|..+-+.+..+. ..++=
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG  133 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG  133 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence            34555555543  3699999998876554332211110  0111122223333345555566655544444332 23334


Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecc--ccccc---EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEE
Q 008467          403 NCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR--EHSKE---IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW  477 (564)
Q Consensus       403 ~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~--~~~~~---i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iw  477 (564)
                      ..++.  |++-|+.++...+++.-|.++-....++.  ....+   +..+.|- +|         .+.|-.=.+..|-.-
T Consensus       134 WgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG---------~lyANVw~t~~I~rI  201 (262)
T COG3823         134 WGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DG---------ELYANVWQTTRIARI  201 (262)
T ss_pred             eeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-cc---------EEEEeeeeecceEEE
Confidence            44443  34445555444455555544322221111  01111   1122221 11         122323333444445


Q ss_pred             eCCCCeEEEEEe------------CCCCCEEEEEEcCCC-CEEEEEe
Q 008467          478 DVELGKLLYSLN------------GHREPVYSLAFSPTG-EYLASGS  511 (564)
Q Consensus       478 d~~~~~~~~~~~------------~h~~~i~~~~~spdg-~~lasgs  511 (564)
                      +..+|+.+..+.            .|..-.+.|++.|++ +++++|-
T Consensus       202 ~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK  248 (262)
T COG3823         202 DPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK  248 (262)
T ss_pred             cCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence            666676655432            234456789999987 5666653

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=83.48  E-value=15  Score=34.22  Aligned_cols=124  Identities=20%  Similarity=0.329  Sum_probs=67.1

Q ss_pred             EEEECCCCCEEEEEeC-C--CcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC
Q 008467          404 CVKWDPTGSLLASCSD-D--VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE  480 (564)
Q Consensus       404 ~v~~~~~~~~las~s~-d--g~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~  480 (564)
                      +-.+-+||++|.+|+. +  ..+|+++...................-+|-|..  ..-++++.+++.|+...+..+|.-.
T Consensus        71 gg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~--~~L~DG~vlIvGG~~~~t~E~~P~~  148 (243)
T PF07250_consen   71 GGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTA--TTLPDGRVLIVGGSNNPTYEFWPPK  148 (243)
T ss_pred             CcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccc--eECCCCCEEEEeCcCCCcccccCCc
Confidence            3456789999999886 3  347777754311011111111112333555532  2234555666666666667777653


Q ss_pred             C-CeEEEE--EeCC---C---CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe
Q 008467          481 L-GKLLYS--LNGH---R---EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT  531 (564)
Q Consensus       481 ~-~~~~~~--~~~h---~---~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~  531 (564)
                      . ......  +...   .   .---.+...|||+.++.+..+.  .|||..+.+.++.+.
T Consensus       149 ~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~lP  206 (243)
T PF07250_consen  149 GPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTLP  206 (243)
T ss_pred             cCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeCC
Confidence            2 111111  1110   0   1112456789999999888764  467888887776654

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=83.35  E-value=28  Score=37.50  Aligned_cols=217  Identities=14%  Similarity=0.285  Sum_probs=99.5

Q ss_pred             CCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecc------cCeEEEEcCCC-ceEEEEeCCCeEEEEEc
Q 008467          314 KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS------GPTLDVDWRNN-VSFATSSTDNMIYVCKI  386 (564)
Q Consensus       314 ~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~-~~~~~~~~d~~i~~~~~  386 (564)
                      .-.+.|...+||.+.+.++....+.+|.+.+-.- ..+..+....      +.-+.+.|... ..|-.-+....+     
T Consensus       110 ~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~f-d~ise~~L~~~dl~ef~khi~VgWgkketqfrgk~~raql-----  183 (1243)
T COG5290         110 KVSNGIVAASWSADEKTWCVVTSTREILLFDKYF-DPISEYHLKKSDLVEFGKHIRVGWGKKETQFRGKGARAQL-----  183 (1243)
T ss_pred             cccCceEEEeeccCCceEEEEEcCceEEEEeccc-cccchhhcchhHHHHhccceEeeecccchhccccchhhhc-----
Confidence            3456788889999999888777888888886321 1111111111      11233444311 111100000000     


Q ss_pred             CCCceeeEecCCCcce-------EEEEECCCCCEEEEEeCC----CcEEEEeCCCCeeeeecc-cccccEEEEEEccCCC
Q 008467          387 GENRPIKTFAGHQGEV-------NCVKWDPTGSLLASCSDD----VTAKIWNMKQDKYVHDLR-EHSKEIYTIRWSPTGS  454 (564)
Q Consensus       387 ~~~~~~~~~~~h~~~i-------~~v~~~~~~~~las~s~d----g~i~iwd~~~~~~~~~~~-~~~~~i~~i~~~p~~~  454 (564)
                      +  .|...+.-..+.+       .-+.|..|..+.+.+...    ..+|+|.-. +. +.... ...+.-..+.|.|.|+
T Consensus       184 r--dptmp~~vD~G~l~avd~~k~~i~wrgD~~y~~v~r~Ee~prra~rvysre-g~-lds~sep~~g~e~~LSWkpqgS  259 (1243)
T COG5290         184 R--DPTMPYMVDYGDLFAVDTNKKIIFWRGDTEYNLVGRSEERPRRAFRVYSRE-GQ-LDSASEPVTGMEHQLSWKPQGS  259 (1243)
T ss_pred             c--CCCCcccccccceeEeeCCceEEEEccCcceeeecchhcccccceeeeccc-cc-cccccCCcccchhccccccCCc
Confidence            0  0000000011111       135666666666555432    235665421 11 11111 1122234578999887


Q ss_pred             CCCCCCCcEEEEEEeCCC-----eEEEEeCC---CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE
Q 008467          455 GTNNPNQQLILASASFDS-----TVKLWDVE---LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI  526 (564)
Q Consensus       455 ~~~~~~~~~~l~s~s~dg-----~i~iwd~~---~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~  526 (564)
                               .+++-..||     .|.++...   -|..-... +...-+..++|+-....+|.+ ..+.|++|-.++..-
T Consensus       260 ---------~~ati~td~~~~S~~ViFfErNGLrHGef~lr~-~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNyhW  328 (1243)
T COG5290         260 ---------KYATIGTDGCSTSESVIFFERNGLRHGEFDLRV-GCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNYHW  328 (1243)
T ss_pred             ---------eeeeeccCCCCCcceEEEEccCCcccCCccccC-CchhhhhhhhhhHHHHHHHHh-hcceEEEEEccceEE
Confidence                     566655554     24444321   11111111 122335566777666666544 345799998876542


Q ss_pred             -EEEEecCCCEEEEEEccCCC-EEEEE
Q 008467          527 -VKTYTGNGGIFEVCWNKEGD-KIAAC  551 (564)
Q Consensus       527 -~~~~~~~~~i~~~~w~~~g~-~la~~  551 (564)
                       ++.-..-.++.-+.|+|.-+ .|...
T Consensus       329 YLK~e~~ip~~s~vkwhpe~~nTl~f~  355 (1243)
T COG5290         329 YLKVERQIPGISYVKWHPEEKNTLLFR  355 (1243)
T ss_pred             EEEEeecCCCcceeeeccccCcEEEEe
Confidence             11111223466688999653 34333

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=83.16  E-value=12  Score=34.30  Aligned_cols=70  Identities=16%  Similarity=0.207  Sum_probs=51.1

Q ss_pred             ECCCCCEEEEEeCCCeEEEEECCCceeE--------eec-------CCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC
Q 008467          283 WNGEGTLLATGSYDGQARIWSTNGDLKC--------TLS-------KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT  347 (564)
Q Consensus       283 ~s~~g~~l~sg~~dg~i~vw~~~~~~~~--------~~~-------~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~  347 (564)
                      ....+.+|+.-+.+|.+++||.......        .+.       .....|..+..+.+|.-+++-+ +|....|+..-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            3456788999999999999997643211        122       3556788899998888777665 57889999887


Q ss_pred             cceeEE
Q 008467          348 EEWKQQ  353 (564)
Q Consensus       348 ~~~~~~  353 (564)
                      +.|...
T Consensus        97 ~~W~~v  102 (219)
T PF07569_consen   97 GCWIRV  102 (219)
T ss_pred             ceeEEe
Confidence            777654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=82.64  E-value=1e+02  Score=35.70  Aligned_cols=23  Identities=22%  Similarity=0.317  Sum_probs=17.9

Q ss_pred             CEEEEEEccCCCEEEEEEcCCcE
Q 008467          535 GIFEVCWNKEGDKIAACFANHTV  557 (564)
Q Consensus       535 ~i~~~~w~~~g~~la~~~~~~~v  557 (564)
                      .+.++|-+|||....+-.+|..|
T Consensus       663 sp~alaVsPdg~v~IAD~gN~rI  685 (1899)
T KOG4659|consen  663 SPYALAVSPDGDVIIADSGNSRI  685 (1899)
T ss_pred             CcceEEECCCCcEEEecCCchhh
Confidence            46789999999988877666554

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=82.40  E-value=8.9  Score=23.97  Aligned_cols=38  Identities=18%  Similarity=0.249  Sum_probs=26.6

Q ss_pred             cEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEE
Q 008467          462 QLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAF  500 (564)
Q Consensus       462 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~  500 (564)
                      +.++++.-.+++|.++|..+++.+..+.....| ..++|
T Consensus         4 ~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P-~~i~~   41 (42)
T TIGR02276         4 TKLYVTNSGSNTVSVIDTATNKVIATIPVGGYP-FGVAV   41 (42)
T ss_pred             CEEEEEeCCCCEEEEEECCCCeEEEEEECCCCC-ceEEe
Confidence            446666767899999999988888777653333 45554

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=82.15  E-value=4.7  Score=24.99  Aligned_cols=27  Identities=15%  Similarity=0.188  Sum_probs=18.4

Q ss_pred             CCEEEEEEccCCCEEEEEEcC---CcEEEE
Q 008467          534 GGIFEVCWNKEGDKIAACFAN---HTVCVL  560 (564)
Q Consensus       534 ~~i~~~~w~~~g~~la~~~~~---~~v~v~  560 (564)
                      +.....+|+|||++|+.++..   |...||
T Consensus         9 ~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    9 GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            446788999999999977653   444443

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=81.90  E-value=7  Score=41.67  Aligned_cols=72  Identities=19%  Similarity=0.210  Sum_probs=43.7

Q ss_pred             CCCCEEEEEeCCCeEEEEECCC-----cee-Eee----------c-----------CCCCCEEEEEeCC----CCCEEEE
Q 008467          285 GEGTLLATGSYDGQARIWSTNG-----DLK-CTL----------S-----------KHKGPIFSLKWNK----KGDYLLT  333 (564)
Q Consensus       285 ~~g~~l~sg~~dg~i~vw~~~~-----~~~-~~~----------~-----------~h~~~V~~l~~~~----~~~~l~s  333 (564)
                      ++...++.+..||.+.......     ... ...          .           ...+.+.++..+.    +..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            4666778888888777665321     111 100          0           0123455666666    6789999


Q ss_pred             eeCCCcEEEEECCCcceeEEEee
Q 008467          334 GSCDKTAIVWDVKTEEWKQQFEF  356 (564)
Q Consensus       334 ~s~D~~v~iwd~~~~~~~~~~~~  356 (564)
                      .+.|+++|+||+.++.++.....
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~~~  258 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATIDL  258 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEEET
T ss_pred             EeCCCeEEEEECCCCeEEEEecc
Confidence            99999999999999998666543

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=81.72  E-value=63  Score=32.72  Aligned_cols=220  Identities=11%  Similarity=0.140  Sum_probs=97.8

Q ss_pred             CCCEEEEee-CCCcEEEEECCCc----ceeEEEee---cc----cCeEEEEcCC-CceEEEE--e----CCCeEEEEEcC
Q 008467          327 KGDYLLTGS-CDKTAIVWDVKTE----EWKQQFEF---HS----GPTLDVDWRN-NVSFATS--S----TDNMIYVCKIG  387 (564)
Q Consensus       327 ~~~~l~s~s-~D~~v~iwd~~~~----~~~~~~~~---~~----~~~~~~~~~~-~~~~~~~--~----~d~~i~~~~~~  387 (564)
                      ..++|+..+ ..+.|.|.|+.+.    ++.+.++.   ..    .....+.... ...++++  .    ..+.+.+.+-.
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            446666666 5678999988643    23333331   11    0111122222 2233332  1    12345555554


Q ss_pred             CCceeeEecCCC---cceEEEEECCCCCEEEEEeC--------------------CCcEEEEeCCCCeeeeeccccc--c
Q 008467          388 ENRPIKTFAGHQ---GEVNCVKWDPTGSLLASCSD--------------------DVTAKIWNMKQDKYVHDLREHS--K  442 (564)
Q Consensus       388 ~~~~~~~~~~h~---~~i~~v~~~~~~~~las~s~--------------------dg~i~iwd~~~~~~~~~~~~~~--~  442 (564)
                      +......+....   ..--.+-|.|..+.++|...                    -.++.+||+.+.+.++++.--.  .
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~  245 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ  245 (461)
T ss_dssp             T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred             cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence            444444333211   12234566777777776542                    3479999999999988775432  3


Q ss_pred             cEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeC-CCCe----EEEEEeC-----C------------CCCEEEEEE
Q 008467          443 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV-ELGK----LLYSLNG-----H------------REPVYSLAF  500 (564)
Q Consensus       443 ~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~-~~~~----~~~~~~~-----h------------~~~i~~~~~  500 (564)
                      ....|+|..+.      +...-++.+...++|..|-- +.++    .+..+..     -            ..-|+.|..
T Consensus       246 ~pLEvRflH~P------~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~i  319 (461)
T PF05694_consen  246 MPLEVRFLHDP------DANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILI  319 (461)
T ss_dssp             EEEEEEE-SST------T--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE
T ss_pred             ceEEEEecCCC------CccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEE
Confidence            45677776543      23334555555566655543 3332    2222211     1            123799999


Q ss_pred             cCCCCEEEEEe-CCCcEEEEeCCCC---eEEEEEe-c----------------CCCEEEEEEccCCCEEEEEE
Q 008467          501 SPTGEYLASGS-LDKSMHIWSLKEG---KIVKTYT-G----------------NGGIFEVCWNKEGDKIAACF  552 (564)
Q Consensus       501 spdg~~lasgs-~dg~i~iw~~~~~---~~~~~~~-~----------------~~~i~~~~w~~~g~~la~~~  552 (564)
                      |.|.++|.... .+|.|+-||+.+-   +++.... +                .++..=|..|.||++|-+..
T Consensus       320 SlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  320 SLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             -TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred             ccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence            99999997665 5899999999764   3333321 1                12234577888999887763

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.52  E-value=65  Score=36.98  Aligned_cols=31  Identities=26%  Similarity=0.449  Sum_probs=25.8

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEECCCc
Q 008467          277 DVTTLDWNGEGTLLATGSYDGQARIWSTNGD  307 (564)
Q Consensus       277 ~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~  307 (564)
                      ....++|+|.-.++|.|..+|.|+++...+-
T Consensus        37 ~~~~~afD~~q~llai~t~tg~i~~yg~~~v   67 (993)
T KOG1983|consen   37 TPSALAFDPTQGLLAIGTRTGAIKIYGQPGV   67 (993)
T ss_pred             CCcceeeccccceEEEEEecccEEEecccce
Confidence            3456789999999999999999999976543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	564
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		5e-33
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		5e-29
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		3e-27
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-25
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		8e-20
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		7e-08
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-25
2gnq_A	336	Structure Of Wdr5 Length = 336		5e-20
2gnq_A	336	Structure Of Wdr5 Length = 336		4e-08
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-25
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		9e-20
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		7e-08
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		1e-25
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		7e-20
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		4e-08
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		1e-25
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		8e-20
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		6e-08
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		1e-25
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		8e-20
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		6e-08
2h9l_A	329	Wdr5delta23 Length = 329		1e-25
2h9l_A	329	Wdr5delta23 Length = 329		8e-20
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-25
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		9e-20
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		7e-08
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		1e-25
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		8e-20
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		6e-08
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-25
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-19
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-07
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-25
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		9e-20
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		6e-08
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-25
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		9e-20
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		6e-08
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-25
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		9e-20
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		6e-08
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-25
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		9e-20
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		6e-08
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		2e-25
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		2e-14
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-25
2g99_A	308	Structural Basis For The Specific Recognition Of Me		9e-20
2g99_A	308	Structural Basis For The Specific Recognition Of Me		6e-08
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		1e-24
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		4e-19
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		3e-24
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		4e-19
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-08
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		6e-24
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		1e-18
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		1e-08
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		2e-21
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		2e-06
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		2e-19
2xtc_A	90	Structure Of The Tbl1 Tetramerisation Domain Length		3e-18
2xtd_A	71	Structure Of The Tbl1 Tetramerisation Domain Length		4e-18
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		4e-18
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		2e-17
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		2e-17
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		1e-10
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		2e-09
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		8e-17
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		6e-12
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		1e-16
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		1e-16
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		3e-16
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		3e-16
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		3e-16
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		4e-16
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		6e-16
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		3e-15
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		4e-15
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		5e-15
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		6e-15
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		6e-15
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-14
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		3e-14
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		3e-14
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		3e-14
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		3e-14
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		3e-14
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		3e-14
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		9e-14
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		3e-13
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		3e-13
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		4e-13
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		9e-07
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		6e-13
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		9e-13
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		9e-09
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		9e-13
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		1e-08
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		1e-12
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		1e-12
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		1e-08
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		1e-12
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		1e-12
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		2e-12
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		5e-12
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		2e-08
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		1e-11
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		4e-08
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		3e-11
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		7e-07
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		3e-11
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		7e-07
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		5e-10
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		1e-09
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		7e-04
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		1e-09
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		4e-09
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		4e-09
3jrp_A	379	Sec13 With Nup145c (Aa109-179) Insertion Blade Leng		5e-08
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		6e-08
2pm6_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		1e-07
2pm9_B	297	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		5e-07
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		1e-06
3ewe_A	349	Crystal Structure Of The Nup85SEH1 COMPLEX Length =		1e-06
3f3f_A	351	Crystal Structure Of The Nucleoporin Pair Nup85-Seh		2e-06
3f3p_A	351	Crystal Structure Of The Nucleoporin Pair Nup85-Seh		2e-06
3bg0_A	316	Architecture Of A Coat For The Nuclear Pore Membran		2e-06
3bg0_A	316	Architecture Of A Coat For The Nuclear Pore Membran		3e-04
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		3e-06
3mmy_A	368	Structural And Functional Analysis Of The Interacti		1e-05
3mmy_A	368	Structural And Functional Analysis Of The Interacti		8e-04
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		1e-05
3dxk_C	372	Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND IN		1e-05
3dxk_C	372	Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND IN		3e-04
1k8k_C	372	Crystal Structure Of Arp23 COMPLEX Length = 372		2e-05
1k8k_C	372	Crystal Structure Of Arp23 COMPLEX Length = 372		2e-04
2pm7_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		3e-05
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		3e-05
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		3e-05
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		4e-05
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		9e-05
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		3e-04
3ei4_B	436	Structure Of The Hsddb1-Hsddb2 Complex Length = 436		9e-05
4e5z_B	436	Damaged Dna Induced Uv-Damaged Dna-Binding Protein		1e-04
4e54_B	435	Damaged Dna Induced Uv-Damaged Dna-Binding Protein		1e-04
2pm9_A	416	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		2e-04
3dwl_C	377	Crystal Structure Of Fission Yeast Arp2/3 Complex L		6e-04

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score =  139 bits (349), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 104/374 (27%), Positives = 181/374 (48%), Gaps = 35/374 (9%)
Query: 188 PEPMDIATTSASESFEIPNSDVTILE---GHTSEVCACAWSPXXXXXXXXXXDSTARIWT 244
           P+   IA+ S  ++ ++ N +  +L+   GH+S V   A+SP          D T ++W 
Sbjct: 26  PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 85
Query: 245 IADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST 304
                     +NG L   +  H        S  V  + ++ +G  +A+ S D   ++W+ 
Sbjct: 86  ----------RNGQLLQTLTGH--------SSSVRGVAFSPDGQTIASASDDKTVKLWNR 127
Query: 305 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 364
           NG L  TL+ H   ++ + ++  G  + + S DKT  +W+ +  +  Q    HS     V
Sbjct: 128 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGV 186
Query: 365 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK 424
            +  +     S++D+          + ++T  GH   V  V + P G  +AS SDD T K
Sbjct: 187 AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 246
Query: 425 IWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL 484
           +WN +  + +  L  HS  +  + + P G           +ASAS D TVKLW+   G+L
Sbjct: 247 LWN-RNGQLLQTLTGHSSSVNGVAFRPDGQ---------TIASASDDKTVKLWNRN-GQL 295
Query: 485 LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNK 543
           L +L GH   V+ +AFSP G+ +AS S DK++ +W+ + G+ ++T TG +  ++ V ++ 
Sbjct: 296 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSP 354
Query: 544 EGDKIAACFANHTV 557
           +G  IA+   + TV
Sbjct: 355 DGQTIASASDDKTV 368

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score =  125 bits (315), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 148/291 (50%), Gaps = 14/291 (4%)
Query: 268 KGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKK 327
           + R    S  V  + ++ +G  +A+ S D   ++W+ NG L  TL+ H   ++ + ++  
Sbjct: 9   RNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPD 68
Query: 328 GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIG 387
           G  + + S DKT  +W+ +  +  Q    HS     V +  +     S++D+        
Sbjct: 69  GQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 127
Query: 388 ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 447
             + ++T  GH   V  V + P G  +AS SDD T K+WN +  + +  L  HS  ++ +
Sbjct: 128 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGV 186
Query: 448 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYL 507
            +SP G           +ASAS D TVKLW+   G+LL +L GH   V  +AFSP G+ +
Sbjct: 187 AFSPDGQ---------TIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTI 236
Query: 508 ASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTV 557
           AS S DK++ +W+ + G++++T TG +  +  V +  +G  IA+   + TV
Sbjct: 237 ASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTV 286

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score =  119 bits (299), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 166/378 (43%), Gaps = 54/378 (14%)
Query: 219 VCACAWSPXXXXXXXX-XXDSTARIWTIADGTSNGGAQNGPLNVLV-LKH---VKGRTNE 273
           + +  W+P           +S AR+  I + T   G +   L ++  L+H   +   + +
Sbjct: 48  IVSSTWNPLDESILAYGEKNSVARLARIVE-TDQEGKKYWKLTIIAELRHPFALSASSGK 106
Query: 274 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLT 333
            +  VT L W+ +G  + TG  +G+ R+W+  G L   L+ H+ PI S+KWNK G ++++
Sbjct: 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIIS 166
Query: 334 GSCDKTAIVWDVKTEEWKQQFEF------------HSGP---TLDVDWRNNVSFATSSTD 378
              +   I+W+V +    Q FE             HSG     +DV+W ++  F      
Sbjct: 167 MDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK 226
Query: 379 NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR 438
             I+V +I E  P     GH G ++ ++++ T  LL S SDD T +IW+       +   
Sbjct: 227 GAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY 286
Query: 439 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSL 498
            HS+ I +  W          + ++I  S S D +V+LW ++   LL        P+++ 
Sbjct: 287 GHSQSIVSASWV--------GDDKVI--SCSMDGSVRLWSLKQNTLLALSIVDGVPIFAG 336
Query: 499 AFSPTGEYLASGSLDKSMHIWSLKE--GKIVKTYTGNGG--------------------- 535
             S  G+  A   +D  ++++ LK+   K    Y    G                     
Sbjct: 337 RISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDY 396
Query: 536 IFEVCWNKEGDKIAACFA 553
           IF++ WN  G+KI+  ++
Sbjct: 397 IFDLSWNCAGNKISVAYS 414

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 122/231 (52%), Gaps = 11/231 (4%)
Query: 305 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 364
           N  LK TL+ H   + S+K++  G++L + S DK   +W     ++++    H     DV
Sbjct: 15  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 365 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 423
            W ++ +   S++D+  + +  +   + +KT  GH   V C  ++P  +L+ S S D + 
Sbjct: 75  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 424 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 483
           +IW++K  K +  L  HS  +  + ++  GS         ++ S+S+D   ++WD   G+
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS---------LIVSSSYDGLCRIWDTASGQ 185
Query: 484 LLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 533
            L +L +    PV  + FSP G+Y+ + +LD ++ +W   +GK +KTYTG+
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 95.1 bits (235), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 11/193 (5%)
Query: 372 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 431
            A+SS D +I +    + +  KT +GH+  ++ V W    +LL S SDD T KIW++   
Sbjct: 41  LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 100
Query: 432 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 491
           K +  L+ HS  ++   ++P         Q  ++ S SFD +V++WDV+ GK L +L  H
Sbjct: 101 KCLKTLKGHSNYVFCCNFNP---------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 151
Query: 492 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIA 549
            +PV ++ F+  G  + S S D    IW    G+ +KT     N  +  V ++  G  I 
Sbjct: 152 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 211
Query: 550 ACFANHTVCVLDF 562
           A   ++T+ + D+
Sbjct: 212 AATLDNTLKLWDY 224

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 484 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 542
           L ++L GH + V S+ FSP GE+LAS S DK + IW   +GK  KT +G+  GI +V W+
Sbjct: 18  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 543 KEGDKIAACFANHTVCVLD 561
            + + + +   + T+ + D
Sbjct: 78  SDSNLLVSASDDKTLKIWD 96

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score =  103 bits (256), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 146/293 (49%), Gaps = 15/293 (5%)
Query: 250 SNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIW-STNGDL 308
           S+   Q+ P  V     +K      +K V+++ ++  G  LA+ S D   +IW + +G  
Sbjct: 22  SSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 81
Query: 309 KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 368
           + T+S HK  I  + W+   + L++ S DKT  +WDV + +  +  + HS      ++  
Sbjct: 82  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 141
Query: 369 NVSFATS-STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 427
             +   S S D  + +  +   + +KT   H   V+ V ++  GSL+ S S D   +IW+
Sbjct: 142 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 201
Query: 428 MKQDKYVHDL-REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY 486
               + +  L  + +  +  +++SP G        + ILA A+ D+T+KLWD   GK L 
Sbjct: 202 TASGQCLKTLIDDDNPPVSFVKFSPNG--------KYILA-ATLDNTLKLWDYSKGKCLK 252
Query: 487 SLNGHREPVYSLA--FSPTG-EYLASGSLDKSMHIWSLKEGKIVKTYTGNGGI 536
           +  GH+   Y +   FS TG +++ SGS D  ++IW+L+  +IV+   G+  +
Sbjct: 253 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 305

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 95.9 bits (237), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 11/193 (5%)
Query: 372 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 431
            A+SS D +I +    + +  KT +GH+  ++ V W    +LL S SDD T KIW++   
Sbjct: 62  LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 121
Query: 432 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 491
           K +  L+ HS  ++   ++P         Q  ++ S SFD +V++WDV+ GK L +L  H
Sbjct: 122 KCLKTLKGHSNYVFCCNFNP---------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 172
Query: 492 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIA 549
            +PV ++ F+  G  + S S D    IW    G+ +KT     N  +  V ++  G  I 
Sbjct: 173 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 232
Query: 550 ACFANHTVCVLDF 562
           A   ++T+ + D+
Sbjct: 233 AATLDNTLKLWDY 245

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 484 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 542
           L ++L GH + V S+ FSP GE+LAS S DK + IW   +GK  KT +G+  GI +V W+
Sbjct: 39  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 98
Query: 543 KEGDKIAACFANHTVCVLD 561
            + + + +   + T+ + D
Sbjct: 99  SDSNLLVSASDDKTLKIWD 117

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 122/231 (52%), Gaps = 11/231 (4%)
Query: 305 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 364
           N  LK TL+ H   + S+K++  G++L + S DK   +W     ++++    H     DV
Sbjct: 15  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 365 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 423
            W ++ +   S++D+  + +  +   + +KT  GH   V C  ++P  +L+ S S D + 
Sbjct: 75  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 424 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 483
           +IW++K  K +  L  HS  +  + ++  GS         ++ S+S+D   ++WD   G+
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS---------LIVSSSYDGLCRIWDTASGQ 185
Query: 484 LLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 533
            L +L +    PV  + FSP G+Y+ + +LD ++ +W   +GK +KTYTG+
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 95.1 bits (235), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 11/193 (5%)
Query: 372 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 431
            A+SS D +I +    + +  KT +GH+  ++ V W    +LL S SDD T KIW++   
Sbjct: 41  LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 100
Query: 432 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 491
           K +  L+ HS  ++   ++P         Q  ++ S SFD +V++WDV+ GK L +L  H
Sbjct: 101 KCLKTLKGHSNYVFCCNFNP---------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 151
Query: 492 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIA 549
            +PV ++ F+  G  + S S D    IW    G+ +KT     N  +  V ++  G  I 
Sbjct: 152 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 211
Query: 550 ACFANHTVCVLDF 562
           A   ++T+ + D+
Sbjct: 212 AATLDNTLKLWDY 224

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 484 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 542
           L ++L GH + V S+ FSP GE+LAS S DK + IW   +GK  KT +G+  GI +V W+
Sbjct: 18  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 543 KEGDKIAACFANHTVCVLD 561
            + + + +   + T+ + D
Sbjct: 78  SDSNLLVSASDDKTLKIWD 96

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score =  103 bits (256), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 146/293 (49%), Gaps = 15/293 (5%)
Query: 250 SNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIW-STNGDL 308
           S+   Q+ P  V     +K      +K V+++ ++  G  LA+ S D   +IW + +G  
Sbjct: 20  SSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 79
Query: 309 KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 368
           + T+S HK  I  + W+   + L++ S DKT  +WDV + +  +  + HS      ++  
Sbjct: 80  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 139
Query: 369 NVSFATS-STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 427
             +   S S D  + +  +   + +KT   H   V+ V ++  GSL+ S S D   +IW+
Sbjct: 140 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 199
Query: 428 MKQDKYVHDL-REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY 486
               + +  L  + +  +  +++SP G        + ILA A+ D+T+KLWD   GK L 
Sbjct: 200 TASGQCLKTLIDDDNPPVSFVKFSPNG--------KYILA-ATLDNTLKLWDYSKGKCLK 250
Query: 487 SLNGHREPVYSLA--FSPTG-EYLASGSLDKSMHIWSLKEGKIVKTYTGNGGI 536
           +  GH+   Y +   FS TG +++ SGS D  ++IW+L+  +IV+   G+  +
Sbjct: 251 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 303

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 95.5 bits (236), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 11/193 (5%)
Query: 372 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 431
            A+SS D +I +    + +  KT +GH+  ++ V W    +LL S SDD T KIW++   
Sbjct: 60  LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 119
Query: 432 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 491
           K +  L+ HS  ++   ++P         Q  ++ S SFD +V++WDV+ GK L +L  H
Sbjct: 120 KCLKTLKGHSNYVFCCNFNP---------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 170
Query: 492 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIA 549
            +PV ++ F+  G  + S S D    IW    G+ +KT     N  +  V ++  G  I 
Sbjct: 171 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 230
Query: 550 ACFANHTVCVLDF 562
           A   ++T+ + D+
Sbjct: 231 AATLDNTLKLWDY 243

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 484 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 542
           L ++L GH + V S+ FSP GE+LAS S DK + IW   +GK  KT +G+  GI +V W+
Sbjct: 37  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 96
Query: 543 KEGDKIAACFANHTVCVLD 561
            + + + +   + T+ + D
Sbjct: 97  SDSNLLVSASDDKTLKIWD 115

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score =  114 bits (285), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 122/231 (52%), Gaps = 11/231 (4%)
Query: 305 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 364
           N  LK TL+ H   + S+K++  G++L + S DK   +W     ++++    H     DV
Sbjct: 18  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 365 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 423
            W ++ +   S++D+  + +  +   + +KT  GH   V C  ++P  +L+ S S D + 
Sbjct: 78  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 137
Query: 424 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 483
           +IW++K  K +  L  HS  +  + ++  GS         ++ S+S+D   ++WD   G+
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS---------LIVSSSYDGLCRIWDTASGQ 188
Query: 484 LLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 533
            L +L +    PV  + FSP G+Y+ + +LD ++ +W   +GK +KTYTG+
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 239

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 95.5 bits (236), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 11/193 (5%)
Query: 372 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 431
            A+SS D +I +    + +  KT +GH+  ++ V W    +LL S SDD T KIW++   
Sbjct: 44  LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 103
Query: 432 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 491
           K +  L+ HS  ++   ++P         Q  ++ S SFD +V++WDV+ GK L +L  H
Sbjct: 104 KCLKTLKGHSNYVFCCNFNP---------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 154
Query: 492 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIA 549
            +PV ++ F+  G  + S S D    IW    G+ +KT     N  +  V ++  G  I 
Sbjct: 155 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 214
Query: 550 ACFANHTVCVLDF 562
           A   ++T+ + D+
Sbjct: 215 AATLDNTLKLWDY 227

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 484 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 542
           L ++L GH + V S+ FSP GE+LAS S DK + IW   +GK  KT +G+  GI +V W+
Sbjct: 21  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 80
Query: 543 KEGDKIAACFANHTVCVLD 561
            + + + +   + T+ + D
Sbjct: 81  SDSNLLVSASDDKTLKIWD 99

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score =  114 bits (285), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 122/231 (52%), Gaps = 11/231 (4%)
Query: 305 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 364
           N  LK TL+ H   + S+K++  G++L + S DK   +W     ++++    H     DV
Sbjct: 18  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 365 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 423
            W ++ +   S++D+  + +  +   + +KT  GH   V C  ++P  +L+ S S D + 
Sbjct: 78  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 137
Query: 424 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 483
           +IW++K  K +  L  HS  +  + ++  GS         ++ S+S+D   ++WD   G+
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS---------LIVSSSYDGLCRIWDTASGQ 188
Query: 484 LLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 533
            L +L +    PV  + FSP G+Y+ + +LD ++ +W   +GK +KTYTG+
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 239

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 95.5 bits (236), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 11/193 (5%)
Query: 372 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 431
            A+SS D +I +    + +  KT +GH+  ++ V W    +LL S SDD T KIW++   
Sbjct: 44  LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 103
Query: 432 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 491
           K +  L+ HS  ++   ++P         Q  ++ S SFD +V++WDV+ GK L +L  H
Sbjct: 104 KCLKTLKGHSNYVFCCNFNP---------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 154
Query: 492 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIA 549
            +PV ++ F+  G  + S S D    IW    G+ +KT     N  +  V ++  G  I 
Sbjct: 155 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 214
Query: 550 ACFANHTVCVLDF 562
           A   ++T+ + D+
Sbjct: 215 AATLDNTLKLWDY 227

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 484 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 542
           L ++L GH + V S+ FSP GE+LAS S DK + IW   +GK  KT +G+  GI +V W+
Sbjct: 21  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 80
Query: 543 KEGDKIAACFANHTVCVLD 561
            + + + +   + T+ + D
Sbjct: 81  SDSNLLVSASDDKTLKIWD 99

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score =  114 bits (285), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 122/231 (52%), Gaps = 11/231 (4%)
Query: 305 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 364
           N  LK TL+ H   + S+K++  G++L + S DK   +W     ++++    H     DV
Sbjct: 29  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 88
Query: 365 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 423
            W ++ +   S++D+  + +  +   + +KT  GH   V C  ++P  +L+ S S D + 
Sbjct: 89  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 148
Query: 424 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 483
           +IW++K  K +  L  HS  +  + ++  GS         ++ S+S+D   ++WD   G+
Sbjct: 149 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS---------LIVSSSYDGLCRIWDTASGQ 199
Query: 484 LLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 533
            L +L +    PV  + FSP G+Y+ + +LD ++ +W   +GK +KTYTG+
Sbjct: 200 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 250

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 95.1 bits (235), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 11/193 (5%)
Query: 372 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 431
            A+SS D +I +    + +  KT +GH+  ++ V W    +LL S SDD T KIW++   
Sbjct: 55  LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 114
Query: 432 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 491
           K +  L+ HS  ++   ++P         Q  ++ S SFD +V++WDV+ GK L +L  H
Sbjct: 115 KCLKTLKGHSNYVFCCNFNP---------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 165
Query: 492 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIA 549
            +PV ++ F+  G  + S S D    IW    G+ +KT     N  +  V ++  G  I 
Sbjct: 166 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 225
Query: 550 ACFANHTVCVLDF 562
           A   ++T+ + D+
Sbjct: 226 AATLDNTLKLWDY 238

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score =  114 bits (285), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 122/231 (52%), Gaps = 11/231 (4%)
Query: 305 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 364
           N  LK TL+ H   + S+K++  G++L + S DK   +W     ++++    H     DV
Sbjct: 11  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 70
Query: 365 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 423
            W ++ +   S++D+  + +  +   + +KT  GH   V C  ++P  +L+ S S D + 
Sbjct: 71  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 130
Query: 424 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 483
           +IW++K  K +  L  HS  +  + ++  GS         ++ S+S+D   ++WD   G+
Sbjct: 131 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS---------LIVSSSYDGLCRIWDTASGQ 181
Query: 484 LLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 533
            L +L +    PV  + FSP G+Y+ + +LD ++ +W   +GK +KTYTG+
Sbjct: 182 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 232

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 95.1 bits (235), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 11/193 (5%)
Query: 372 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 431
            A+SS D +I +    + +  KT +GH+  ++ V W    +LL S SDD T KIW++   
Sbjct: 37  LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 96
Query: 432 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 491
           K +  L+ HS  ++   ++P         Q  ++ S SFD +V++WDV+ GK L +L  H
Sbjct: 97  KCLKTLKGHSNYVFCCNFNP---------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 147
Query: 492 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIA 549
            +PV ++ F+  G  + S S D    IW    G+ +KT     N  +  V ++  G  I 
Sbjct: 148 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 207
Query: 550 ACFANHTVCVLDF 562
           A   ++T+ + D+
Sbjct: 208 AATLDNTLKLWDY 220

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 484 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 542
           L ++L GH + V S+ FSP GE+LAS S DK + IW   +GK  KT +G+  GI +V W+
Sbjct: 14  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 73
Query: 543 KEGDKIAACFANHTVCVLD 561
            + + + +   + T+ + D
Sbjct: 74  SDSNLLVSASDDKTLKIWD 92

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score =  114 bits (285), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 122/231 (52%), Gaps = 11/231 (4%)
Query: 305 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 364
           N  LK TL+ H   + S+K++  G++L + S DK   +W     ++++    H     DV
Sbjct: 18  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 365 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 423
            W ++ +   S++D+  + +  +   + +KT  GH   V C  ++P  +L+ S S D + 
Sbjct: 78  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 137
Query: 424 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 483
           +IW++K  K +  L  HS  +  + ++  GS         ++ S+S+D   ++WD   G+
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS---------LIVSSSYDGLCRIWDTASGQ 188
Query: 484 LLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 533
            L +L +    PV  + FSP G+Y+ + +LD ++ +W   +GK +KTYTG+
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 239

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 95.1 bits (235), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 11/193 (5%)
Query: 372 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 431
            A+SS D +I +    + +  KT +GH+  ++ V W    +LL S SDD T KIW++   
Sbjct: 44  LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 103
Query: 432 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 491
           K +  L+ HS  ++   ++P         Q  ++ S SFD +V++WDV+ GK L +L  H
Sbjct: 104 KCLKTLKGHSNYVFCCNFNP---------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 154
Query: 492 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIA 549
            +PV ++ F+  G  + S S D    IW    G+ +KT     N  +  V ++  G  I 
Sbjct: 155 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 214
Query: 550 ACFANHTVCVLDF 562
           A   ++T+ + D+
Sbjct: 215 AATLDNTLKLWDY 227

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 484 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 542
           L ++L GH + V S+ FSP GE+LAS S DK + IW   +GK  KT +G+  GI +V W+
Sbjct: 21  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 80
Query: 543 KEGDKIAACFANHTVCVLD 561
            + + + +   + T+ + D
Sbjct: 81  SDSNLLVSASDDKTLKIWD 99

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 121/231 (52%), Gaps = 11/231 (4%)
Query: 305 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 364
           N  LK TL+ H   + S+K++  G++L   S DK   +W     ++++    H     DV
Sbjct: 15  NYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 365 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 423
            W ++ +   S++D+  + +  +   + +KT  GH   V C  ++P  +L+ S S D + 
Sbjct: 75  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 424 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 483
           +IW++K  K +  L  HS  +  + ++  GS         ++ S+S+D   ++WD   G+
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS---------LIVSSSYDGLCRIWDTASGQ 185
Query: 484 LLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 533
            L +L +    PV  + FSP G+Y+ + +LD ++ +W   +GK +KTYTG+
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 11/193 (5%)
Query: 372 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 431
            A SS D +I +    + +  KT +GH+  ++ V W    +LL S SDD T KIW++   
Sbjct: 41  LAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 100
Query: 432 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 491
           K +  L+ HS  ++   ++P         Q  ++ S SFD +V++WDV+ GK L +L  H
Sbjct: 101 KCLKTLKGHSNYVFCCNFNP---------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 151
Query: 492 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIA 549
            +PV ++ F+  G  + S S D    IW    G+ +KT     N  +  V ++  G  I 
Sbjct: 152 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 211
Query: 550 ACFANHTVCVLDF 562
           A   ++T+ + D+
Sbjct: 212 AATLDNTLKLWDY 224

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 484 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 542
           L ++L GH + V S+ FSP GE+LA+ S DK + IW   +GK  KT +G+  GI +V W+
Sbjct: 18  LKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 543 KEGDKIAACFANHTVCVLD 561
            + + + +   + T+ + D
Sbjct: 78  SDSNLLVSASDDKTLKIWD 96

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 122/231 (52%), Gaps = 11/231 (4%)
Query: 305 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 364
           N  LK TL+ H   + S+K++  G++L + S DK   +W     ++++    H     DV
Sbjct: 17  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 76
Query: 365 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 423
            W ++ +   S++D+  + +  +   + +KT  GH   V C  ++P  +L+ S S D + 
Sbjct: 77  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 136
Query: 424 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 483
           +IW++K  K +  L  HS  +  + ++  GS         ++ S+S+D   ++WD   G+
Sbjct: 137 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS---------LIVSSSYDGLCRIWDTASGQ 187
Query: 484 LLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 533
            L +L +    PV  + FSP G+Y+ + +LD ++ +W   +GK +KTYTG+
Sbjct: 188 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 238

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 95.1 bits (235), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 11/193 (5%)
Query: 372 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 431
            A+SS D +I +    + +  KT +GH+  ++ V W    +LL S SDD T KIW++   
Sbjct: 43  LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 102
Query: 432 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 491
           K +  L+ HS  ++   ++P         Q  ++ S SFD +V++WDV+ GK L +L  H
Sbjct: 103 KCLKTLKGHSNYVFCCNFNP---------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 153
Query: 492 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIA 549
            +PV ++ F+  G  + S S D    IW    G+ +KT     N  +  V ++  G  I 
Sbjct: 154 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 213
Query: 550 ACFANHTVCVLDF 562
           A   ++T+ + D+
Sbjct: 214 AATLDNTLKLWDY 226

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 484 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 542
           L ++L GH + V S+ FSP GE+LAS S DK + IW   +GK  KT +G+  GI +V W+
Sbjct: 20  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 79
Query: 543 KEGDKIAACFANHTVCVLD 561
            + + + +   + T+ + D
Sbjct: 80  SDSNLLVSASDDKTLKIWD 98

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 122/231 (52%), Gaps = 11/231 (4%)
Query: 305 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 364
           N  LK TL+ H   + S+K++  G++L + S DK   +W     ++++    H     DV
Sbjct: 12  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 71
Query: 365 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 423
            W ++ +   S++D+  + +  +   + +KT  GH   V C  ++P  +L+ S S D + 
Sbjct: 72  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 131
Query: 424 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 483
           +IW++K  K +  L  HS  +  + ++  GS         ++ S+S+D   ++WD   G+
Sbjct: 132 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS---------LIVSSSYDGLCRIWDTASGQ 182
Query: 484 LLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 533
            L +L +    PV  + FSP G+Y+ + +LD ++ +W   +GK +KTYTG+
Sbjct: 183 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 233

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 95.1 bits (235), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 11/193 (5%)
Query: 372 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 431
            A+SS D +I +    + +  KT +GH+  ++ V W    +LL S SDD T KIW++   
Sbjct: 38  LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 97
Query: 432 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 491
           K +  L+ HS  ++   ++P         Q  ++ S SFD +V++WDV+ GK L +L  H
Sbjct: 98  KCLKTLKGHSNYVFCCNFNP---------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 148
Query: 492 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIA 549
            +PV ++ F+  G  + S S D    IW    G+ +KT     N  +  V ++  G  I 
Sbjct: 149 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 208
Query: 550 ACFANHTVCVLDF 562
           A   ++T+ + D+
Sbjct: 209 AATLDNTLKLWDY 221

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 484 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 542
           L ++L GH + V S+ FSP GE+LAS S DK + IW   +GK  KT +G+  GI +V W+
Sbjct: 15  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 74
Query: 543 KEGDKIAACFANHTVCVLD 561
            + + + +   + T+ + D
Sbjct: 75  SDSNLLVSASDDKTLKIWD 93

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 122/231 (52%), Gaps = 11/231 (4%)
Query: 305 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 364
           N  LK TL+ H   + S+K++  G++L + S DK   +W     ++++    H     DV
Sbjct: 12  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 71
Query: 365 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 423
            W ++ +   S++D+  + +  +   + +KT  GH   V C  ++P  +L+ S S D + 
Sbjct: 72  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 131
Query: 424 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 483
           +IW++K  K +  L  HS  +  + ++  GS         ++ S+S+D   ++WD   G+
Sbjct: 132 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS---------LIVSSSYDGLCRIWDTASGQ 182
Query: 484 LLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 533
            L +L +    PV  + FSP G+Y+ + +LD ++ +W   +GK +KTYTG+
Sbjct: 183 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 233

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 95.1 bits (235), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 11/193 (5%)
Query: 372 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 431
            A+SS D +I +    + +  KT +GH+  ++ V W    +LL S SDD T KIW++   
Sbjct: 38  LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 97
Query: 432 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 491
           K +  L+ HS  ++   ++P         Q  ++ S SFD +V++WDV+ GK L +L  H
Sbjct: 98  KCLKTLKGHSNYVFCCNFNP---------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 148
Query: 492 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIA 549
            +PV ++ F+  G  + S S D    IW    G+ +KT     N  +  V ++  G  I 
Sbjct: 149 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 208
Query: 550 ACFANHTVCVLDF 562
           A   ++T+ + D+
Sbjct: 209 AATLDNTLKLWDY 221

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 484 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 542
           L ++L GH + V S+ FSP GE+LAS S DK + IW   +GK  KT +G+  GI +V W+
Sbjct: 15  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 74
Query: 543 KEGDKIAACFANHTVCVLD 561
            + + + +   + T+ + D
Sbjct: 75  SDSNLLVSASDDKTLKIWD 93

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 122/231 (52%), Gaps = 11/231 (4%)
Query: 305 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 364
           N  LK TL+ H   + S+K++  G++L + S DK   +W     ++++    H     DV
Sbjct: 13  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 72
Query: 365 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 423
            W ++ +   S++D+  + +  +   + +KT  GH   V C  ++P  +L+ S S D + 
Sbjct: 73  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 132
Query: 424 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 483
           +IW++K  K +  L  HS  +  + ++  GS         ++ S+S+D   ++WD   G+
Sbjct: 133 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS---------LIVSSSYDGLCRIWDTASGQ 183
Query: 484 LLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 533
            L +L +    PV  + FSP G+Y+ + +LD ++ +W   +GK +KTYTG+
Sbjct: 184 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 234

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 95.1 bits (235), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 11/193 (5%)
Query: 372 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 431
            A+SS D +I +    + +  KT +GH+  ++ V W    +LL S SDD T KIW++   
Sbjct: 39  LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 98
Query: 432 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 491
           K +  L+ HS  ++   ++P         Q  ++ S SFD +V++WDV+ GK L +L  H
Sbjct: 99  KCLKTLKGHSNYVFCCNFNP---------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 149
Query: 492 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIA 549
            +PV ++ F+  G  + S S D    IW    G+ +KT     N  +  V ++  G  I 
Sbjct: 150 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 209
Query: 550 ACFANHTVCVLDF 562
           A   ++T+ + D+
Sbjct: 210 AATLDNTLKLWDY 222

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 484 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 542
           L ++L GH + V S+ FSP GE+LAS S DK + IW   +GK  KT +G+  GI +V W+
Sbjct: 16  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 75
Query: 543 KEGDKIAACFANHTVCVLD 561
            + + + +   + T+ + D
Sbjct: 76  SDSNLLVSASDDKTLKIWD 94

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/248 (33%), Positives = 121/248 (48%), Gaps = 57/248 (22%)
Query: 281 LDWNGEGTLLATGSYDGQARIWSTNGD---LKCTLSK-HKGPIFSLKWNKKGDYLLTGSC 336
           L WN  GTLLA+   D + RIW T GD    K  LS+ H+  +  + W+  G+YL + S 
Sbjct: 22  LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 337 DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA 396
           D T  +W       K Q +F                                   + T  
Sbjct: 82  DATTCIWK------KNQDDFEC---------------------------------VTTLE 102
Query: 397 GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNM-KQDKY--VHDLREHSKEIYTIRWSPTG 453
           GH+ EV  V W P+G+LLA+CS D +  +W + ++D+Y  V  L  H++++  + W P+ 
Sbjct: 103 GHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPS- 161
Query: 454 SGTNNPNQQLILASASFDSTVKLWDVELGKLL--YSLNGHREPVYSLAFSPTGEYLASGS 511
                   Q +LASAS+D TVKL+  E    +   +L GH   V+SLAF P+G+ LAS S
Sbjct: 162 --------QELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS 213
Query: 512 LDKSMHIW 519
            D+++ IW
Sbjct: 214 DDRTVRIW 221

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 86/169 (50%), Gaps = 17/169 (10%)
Query: 397 GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY--VHDLREHSKEIYTIRWSPTGS 454
           GHQ  V  V W P G+ LAS S D T  IW   QD +  V  L  H  E+ ++ W+P+G+
Sbjct: 59  GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN 118
Query: 455 GTNNPNQQLILASASFDSTVKLWDVELG---KLLYSLNGHREPVYSLAFSPTGEYLASGS 511
                    +LA+ S D +V +W+V+     + +  LN H + V  + + P+ E LAS S
Sbjct: 119 ---------LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASAS 169
Query: 512 LDKSMHIWSLKEGKIVKTYTGNG---GIFEVCWNKEGDKIAACFANHTV 557
            D ++ ++  +E   V   T  G    ++ + ++  G ++A+C  + TV
Sbjct: 170 YDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTV 218

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 122/231 (52%), Gaps = 11/231 (4%)
Query: 305 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 364
           N  LK TL+ H   + S+K++  G++L + S DK   +W     ++++    H     DV
Sbjct: 8   NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 67
Query: 365 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 423
            W ++ +   S++D+  + +  +   + +KT  GH   V C  ++P  +L+ S S D + 
Sbjct: 68  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 127
Query: 424 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 483
           +IW++K  K +  L  HS  +  + ++  GS         ++ S+S+D   ++WD   G+
Sbjct: 128 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS---------LIVSSSYDGLCRIWDTASGQ 178
Query: 484 LLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 533
            L +L +    PV  + FSP G+Y+ + +LD ++ +W   +GK +KTYTG+
Sbjct: 179 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 229

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 95.1 bits (235), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 11/193 (5%)
Query: 372 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 431
            A+SS D +I +    + +  KT +GH+  ++ V W    +LL S SDD T KIW++   
Sbjct: 34  LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 93
Query: 432 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 491
           K +  L+ HS  ++   ++P         Q  ++ S SFD +V++WDV+ GK L +L  H
Sbjct: 94  KCLKTLKGHSNYVFCCNFNP---------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 144
Query: 492 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIA 549
            +PV ++ F+  G  + S S D    IW    G+ +KT     N  +  V ++  G  I 
Sbjct: 145 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 204
Query: 550 ACFANHTVCVLDF 562
           A   ++T+ + D+
Sbjct: 205 AATLDNTLKLWDY 217

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 484 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 542
           L ++L GH + V S+ FSP GE+LAS S DK + IW   +GK  KT +G+  GI +V W+
Sbjct: 11  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 70
Query: 543 KEGDKIAACFANHTVCVLD 561
            + + + +   + T+ + D
Sbjct: 71  SDSNLLVSASDDKTLKIWD 89

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 127/269 (47%), Gaps = 13/269 (4%)
Query: 278 VTTLDWNGEGTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC 336
           VT + ++   +++ + S D   ++W    GD + TL  H   +  + ++  G  L + S 
Sbjct: 111 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA 170
Query: 337 DKTAIVWDVKTEEWKQQFEFHSGPTLDVD-WRNNVSFATSSTDNMIYVCKIGENRPIKTF 395
           D T  +WD +  E  +    H      V    N     ++S D  I + ++     +KTF
Sbjct: 171 DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF 230
Query: 396 AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP---- 451
            GH+  V  V+ +  G+L+ASCS+D T ++W +   +   +LREH   +  I W+P    
Sbjct: 231 TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSY 290
Query: 452 ------TGSGTNNPNQQ-LILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG 504
                 TGS T    +    L S S D T+K+WDV  G  L +L GH   V  + F   G
Sbjct: 291 SSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGG 350
Query: 505 EYLASGSLDKSMHIWSLKEGKIVKTYTGN 533
           +++ S + DK++ +W  K  + +KT   +
Sbjct: 351 KFILSCADDKTLRVWDYKNKRCMKTLNAH 379

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 96/173 (55%), Gaps = 12/173 (6%)
Query: 390 RPIKTFA--GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 447
           RP + +A  GH+  V  V + P  S++ S S+D T K+W+ +   +   L+ H+  +  I
Sbjct: 97  RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDI 156
Query: 448 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYL 507
            +  +G          +LAS S D T+KLWD +  + + +++GH   V S++  P G+++
Sbjct: 157 SFDHSGK---------LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHI 207
Query: 508 ASGSLDKSMHIWSLKEGKIVKTYTGNGG-IFEVCWNKEGDKIAACFANHTVCV 559
            S S DK++ +W ++ G  VKT+TG+   +  V  N++G  IA+C  + TV V
Sbjct: 208 VSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV 260

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score =  109 bits (273), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 120/231 (51%), Gaps = 11/231 (4%)
Query: 305 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 364
           N  L  TL+ H   + S+K++  G++L + S DK   +W     ++++    H     DV
Sbjct: 15  NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 365 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 423
            W ++ +   S++D+  + +  +   + +KT  GH   V C  ++P  +L+ S S D + 
Sbjct: 75  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 424 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 483
           +IW++K    +  L  HS  +  + ++  GS         ++ S+S+D   ++WD   G+
Sbjct: 135 RIWDVKTGMCLKTLPAHSDPVSAVHFNRDGS---------LIVSSSYDGLCRIWDTASGQ 185
Query: 484 LLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 533
            L +L +    PV  + FSP G+Y+ + +LD ++ +W   +GK +KTYTG+
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 98/193 (50%), Gaps = 11/193 (5%)
Query: 372 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 431
            A+SS D +I +    + +  KT +GH+  ++ V W    +LL S SDD T KIW++   
Sbjct: 41  LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 100
Query: 432 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 491
           K +  L+ HS  ++   ++P         Q  ++ S SFD +V++WDV+ G  L +L  H
Sbjct: 101 KCLKTLKGHSNYVFCCNFNP---------QSNLIVSGSFDESVRIWDVKTGMCLKTLPAH 151
Query: 492 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIA 549
            +PV ++ F+  G  + S S D    IW    G+ +KT     N  +  V ++  G  I 
Sbjct: 152 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 211
Query: 550 ACFANHTVCVLDF 562
           A   ++T+ + D+
Sbjct: 212 AATLDNTLKLWDY 224

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 484 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 542
           L+++L GH + V S+ FSP GE+LAS S DK + IW   +GK  KT +G+  GI +V W+
Sbjct: 18  LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 543 KEGDKIAACFANHTVCVLD 561
            + + + +   + T+ + D
Sbjct: 78  SDSNLLVSASDDKTLKIWD 96

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score =  108 bits (271), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 119/231 (51%), Gaps = 11/231 (4%)
Query: 305 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 364
           N  L  TL+ H   + S+K++  G++L + S DK   +W     ++++    H     DV
Sbjct: 15  NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 365 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 423
            W ++ +   S++D+  + +  +   + +KT  GH   V C  ++P  +L+ S S D + 
Sbjct: 75  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 424 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 483
           +IW++K    +  L  HS  +  + ++  GS         ++ S+S+D   ++WD   G+
Sbjct: 135 RIWDVKTGMCLKTLPAHSDPVSAVHFNRDGS---------LIVSSSYDGLCRIWDTASGQ 185
Query: 484 LLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 533
            L +L +    PV  + FSP G+Y+ + +LD  + +W   +GK +KTYTG+
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGH 236

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/158 (36%), Positives = 81/158 (51%), Gaps = 10/158 (6%)
Query: 394 TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG 453
           T AGH   V+ VK+ P G  LAS S D   KIW     K+   +  H   I  + WS   
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--- 77
Query: 454 SGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD 513
           S +N      +L SAS D T+K+WDV  GK L +L GH   V+   F+P    + SGS D
Sbjct: 78  SDSN------LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 514 KSMHIWSLKEGKIVKTYTGNGG-IFEVCWNKEGDKIAA 550
           +S+ IW +K G  +KT   +   +  V +N++G  I +
Sbjct: 132 ESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVS 169

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 484 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 542
           L+++L GH + V S+ FSP GE+LAS S DK + IW   +GK  KT +G+  GI +V W+
Sbjct: 18  LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 543 KEGDKIAACFANHTVCVLD 561
            + + + +   + T+ + D
Sbjct: 78  SDSNLLVSASDDKTLKIWD 96

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 122/262 (46%), Gaps = 25/262 (9%)
Query: 264 LKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSL 322
           L+ +  R+ E SK V  L ++ +   + +G  D   +IW  N  + K  L+ H G +  L
Sbjct: 123 LQRIHCRS-ETSKGVYCLQYDDQK--IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCL 179
Query: 323 KWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIY 382
           +++++   ++TGS D T  VWDV T E       H    L + + NN    T S D  I 
Sbjct: 180 QYDER--VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF-NNGMMVTCSKDRSIA 236
Query: 383 VCKIGENRPI---KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 439
           V  +     I   +   GH+  VN V +D     + S S D T K+WN    ++V  L  
Sbjct: 237 VWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLNG 294
Query: 440 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLA 499
           H + I  +++           +  ++ S S D+T++LWD+E G  L  L GH E V  + 
Sbjct: 295 HKRGIACLQY-----------RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR 343
Query: 500 FSPTGEYLASGSLDKSMHIWSL 521
           F    + + SG+ D  + +W L
Sbjct: 344 FD--NKRIVSGAYDGKIKVWDL 363

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 70/144 (48%), Gaps = 18/144 (12%)
Query: 393 KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT 452
           +   GH G V C+++D    ++ + S D T ++W++   + ++ L  H + +  +R+   
Sbjct: 167 RILTGHTGSVLCLQYDE--RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF--- 221
Query: 453 GSGTNNPNQQLILASASFDSTVKLWDVELGK---LLYSLNGHREPVYSLAFSPTGEYLAS 509
               NN     ++ + S D ++ +WD+       L   L GHR  V  + F    +Y+ S
Sbjct: 222 ----NNG----MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVS 271
Query: 510 GSLDKSMHIWSLKEGKIVKTYTGN 533
            S D+++ +W+    + V+T  G+
Sbjct: 272 ASGDRTIKVWNTSTCEFVRTLNGH 295

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 119/247 (48%), Gaps = 19/247 (7%)
Query: 287 GTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV 345
           G  + +GS D   ++WS   G    TL  H G ++S +   + + +++GS D+T  VW+ 
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ--MRDNIIISGSTDRTLKVWNA 186
Query: 346 KTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCV 405
           +T E       H+  T+     +     + S D  + V  I   + +    GH   V CV
Sbjct: 187 ETGECIHTLYGHT-STVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV 245
Query: 406 KWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLIL 465
           ++D  G  + S + D   K+W+ + +  +H L+ H+  +Y++++             + +
Sbjct: 246 QYD--GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDG-----------IHV 292
Query: 466 ASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK 525
            S S D+++++WDVE G  +++L GH+     +        L SG+ D ++ IW +K G+
Sbjct: 293 VSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQ 350
Query: 526 IVKTYTG 532
            ++T  G
Sbjct: 351 CLQTLQG 357

>pdb|2XTC|A Chain A, Structure Of The Tbl1 Tetramerisation Domain Length = 90

Iteration: 1
 Score = 90.1 bits (222), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/65 (61%), Positives = 53/65 (81%)
Query: 3  SITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLE 62
          SITS+E+N+LV+RYLQESG  HSAF  G E+ I++ NI+G LVPP ALI+ +QKGLQY+E
Sbjct: 2  SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVE 61
Query: 63 MEANL 67
           E ++
Sbjct: 62 AEISI 66

>pdb|2XTD|A Chain A, Structure Of The Tbl1 Tetramerisation Domain Length = 71

Iteration: 1
 Score = 89.7 bits (221), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 40/65 (61%), Positives = 53/65 (81%)
Query: 3  SITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLE 62
          SITS+E+N+LV+RYLQESG  HSAF  G E+ I++ NI+G LVPP ALI+ +QKGLQY+E
Sbjct: 2  SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVE 61
Query: 63 MEANL 67
           E ++
Sbjct: 62 AEISI 66

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 89.7 bits (221), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 122/261 (46%), Gaps = 41/261 (15%)
Query: 286 EGTLLATGSYDGQARIW-STNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD 344
           E   + TG+ D   R++ S N      LS H G +++LK+   G  L++GS D+T  VWD
Sbjct: 131 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWD 189
Query: 345 VKTEEWKQQFEFHSGPT--LD-VDWRNNVSFATSSTDNMIYVCKIG-------------- 387
           +K       FE H+     LD V+++N     T S DN ++V K+               
Sbjct: 190 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY 249
Query: 388 -------ENRP--IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR 438
                  E  P  +    GH   V  V     G+++ S S D T  +W++ Q K ++ L 
Sbjct: 250 PLVFHTPEENPYFVGVLRGHMASVRTVS--GHGNIVVSGSYDNTLIVWDVAQMKCLYILS 307
Query: 439 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSL 498
            H+  IY+         T   +++    SAS D+T+++WD+E G+L+Y+L GH   V  L
Sbjct: 308 GHTDRIYS---------TIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLL 358
Query: 499 AFSPTGEYLASGSLDKSMHIW 519
             S   ++L S + D S+  W
Sbjct: 359 RLSD--KFLVSAAADGSIRGW 377

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 121/261 (46%), Gaps = 41/261 (15%)
Query: 286 EGTLLATGSYDGQARIW-STNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD 344
           E   + TG+ D   R++ S N      LS H G +++LK+   G  L++GS D+T  VWD
Sbjct: 131 EDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWD 189
Query: 345 VKTEEWKQQFEFHSGPT--LD-VDWRNNVSFATSSTDNMIYVCKIG-------------- 387
           +K       FE H+     LD V+++N     T S DN ++V K+               
Sbjct: 190 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY 249
Query: 388 -------ENRP--IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR 438
                  E  P  +    GH   V  V     G+++ S S D T  +W++ Q K ++ L 
Sbjct: 250 PLVFHTPEENPYFVGVLRGHXASVRTVS--GHGNIVVSGSYDNTLIVWDVAQXKCLYILS 307
Query: 439 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSL 498
            H+  IY+         T   +++    SAS D+T+++WD+E G+L Y+L GH   V  L
Sbjct: 308 GHTDRIYS---------TIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLL 358
Query: 499 AFSPTGEYLASGSLDKSMHIW 519
             S   ++L S + D S+  W
Sbjct: 359 RLSD--KFLVSAAADGSIRGW 377

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 110/245 (44%), Gaps = 19/245 (7%)
Query: 287 GTLLATGSYDGQARIWSTNGDL-------KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKT 339
           G  +A G  D +  ++    D        K +++ H   + +  +      +LT S D T
Sbjct: 118 GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGT 177
Query: 340 AIVWDVKTEEWKQQFEFHSGPTLDVDW---RNNVSFATSSTDNMIYVCKIGENRPIKTFA 396
             +WDV++ +  Q F  H    L +D        +F +   D    V  +   + ++ F 
Sbjct: 178 CALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFE 237
Query: 397 GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGT 456
            H+ +VN V++ P+G   AS SDD T ++++++ D+ V         IY+      G+ +
Sbjct: 238 THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV--------AIYSKESIIFGASS 289
Query: 457 NNPNQQLILASASF-DSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKS 515
            + +    L  A + D T+ +WDV  G  +  L GH   V +L  SP G    SGS D +
Sbjct: 290 VDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHT 349
Query: 516 MHIWS 520
           + +W+
Sbjct: 350 LRVWA 354

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/267 (20%), Positives = 109/267 (40%), Gaps = 29/267 (10%)
Query: 311 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 370
           TL  H   +  + W K    +++ S D   IVWD  T   +         T+   W    
Sbjct: 59  TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAV------TMPCTWVMAC 112
Query: 371 SFATSST-------DNM--IYVCKIGENRPI----KTFAGHQGEVNCVKWDPTGSLLASC 417
           ++A S         DN   +Y     +N  +    K+ A H   ++   +  +   + + 
Sbjct: 113 AYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTA 172
Query: 418 SDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW 477
           S D T  +W+++  + +     H  ++  +  +P+ +G           S   D    +W
Sbjct: 173 SGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT-------FVSGGCDKKAMVW 225
Query: 478 DVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIF 537
           D+  G+ + +   H   V S+ + P+G+  ASGS D +  ++ L+  + V  Y+    IF
Sbjct: 226 DMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIF 285
Query: 538 ---EVCWNKEGDKIAACFANHTVCVLD 561
               V ++  G  + A + ++T+ V D
Sbjct: 286 GASSVDFSLSGRLLFAGYNDYTINVWD 312

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 79/213 (37%), Gaps = 42/213 (19%)
Query: 393 KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT 452
           +T  GH  +V C+ W      + S S D    +W+       H +      +    ++P+
Sbjct: 58  RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS 117
Query: 453 G---------------------------------------SGTNNPNQQLILASASFDST 473
           G                                       S  +  N  + + +AS D T
Sbjct: 118 GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGT 177
Query: 474 VKLWDVELGKLLYSLNGHREPVYSLAFSP--TGEYLASGSLDKSMHIWSLKEGKIVKTY- 530
             LWDVE G+LL S +GH   V  L  +P  TG    SG  DK   +W ++ G+ V+ + 
Sbjct: 178 CALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFE 237
Query: 531 TGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 563
           T    +  V +   GD  A+   + T  + D R
Sbjct: 238 THESDVNSVRYYPSGDAFASGSDDATCRLYDLR 270

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 85.5 bits (210), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 119/255 (46%), Gaps = 39/255 (15%)
Query: 315 HKGPIFSLKWNKKGDYLLTGSCDKTAIVW-------------DVKTEEWKQQFEFHSGPT 361
           H   +  +K++  G+YL TG C+KT  V+             D    +  +     S P+
Sbjct: 63  HTSVVCCVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 121
Query: 362 LDVDWRNNVSF-------ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL 414
            D+  R+ V F       AT + D +I +  I   + +    GH+ ++  + + P+G  L
Sbjct: 122 SDLYIRS-VCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 180
Query: 415 ASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTV 474
            S S D T +IW+++  +    L      + T+  SP G G         +A+ S D  V
Sbjct: 181 VSGSGDRTVRIWDLRTGQCSLTLSIEDG-VTTVAVSP-GDGK-------YIAAGSLDRAV 231
Query: 475 KLWDVELGKLLYSLN-------GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG-KI 526
           ++WD E G L+  L+       GH++ VYS+ F+  G+ + SGSLD+S+ +W+L+     
Sbjct: 232 RVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK 291
Query: 527 VKTYTGNGGIFEVCW 541
             + T N G  EV +
Sbjct: 292 SDSKTPNSGTCEVTY 306

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 80/154 (51%), Gaps = 16/154 (10%)
Query: 411 GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY--TIRWSPTGSGTNNPNQQLILASA 468
           GSL+A  SDD  A     K  + ++     S ++Y  ++ +SP G           LA+ 
Sbjct: 95  GSLVARLSDDSAAN----KDPENLNTSSSPSSDLYIRSVCFSPDGK---------FLATG 141
Query: 469 SFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK 528
           + D  +++WD+E  K++  L GH + +YSL + P+G+ L SGS D+++ IW L+ G+   
Sbjct: 142 AEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSL 201
Query: 529 TYTGNGGIFEVCWNK-EGDKIAACFANHTVCVLD 561
           T +   G+  V  +  +G  IAA   +  V V D
Sbjct: 202 TLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD 235

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 115/265 (43%), Gaps = 30/265 (11%)
Query: 311 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 370
           TL  H   I+++ W      LL+ S D   I+WD  T       + H+ P L   W    
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN-----KVHAIP-LRSSWVMTC 103
Query: 371 SFATS----STDNMIYVCKI-------GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 419
           ++A S    +   +  +C I       G  R  +  AGH G ++C ++     ++ S S 
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SG 162
Query: 420 DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 479
           D T  +W+++  +       H+ ++ ++  +P            +  S + D++ KLWDV
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAP---------DTRLFVSGACDASAKLWDV 213
Query: 480 ELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG---GI 536
             G    +  GH   + ++ F P G   A+GS D +  ++ L+  + + TY+ +    GI
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI 273
Query: 537 FEVCWNKEGDKIAACFANHTVCVLD 561
             V ++K G  + A + +    V D
Sbjct: 274 TSVSFSKSGRLLLAGYDDFNCNVWD 298

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 115/265 (43%), Gaps = 30/265 (11%)
Query: 311 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 370
           TL  H   I+++ W      LL+ S D   I+WD  T       + H+ P L   W    
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN-----KVHAIP-LRSSWVMTC 103
Query: 371 SFATS----STDNMIYVCKI-------GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 419
           ++A S    +   +  +C I       G  R  +  AGH G ++C ++     ++ S S 
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SG 162
Query: 420 DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 479
           D T  +W+++  +       H+ ++ ++  +P            +  S + D++ KLWDV
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAP---------DTRLFVSGACDASAKLWDV 213
Query: 480 ELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG---GI 536
             G    +  GH   + ++ F P G   A+GS D +  ++ L+  + + TY+ +    GI
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI 273
Query: 537 FEVCWNKEGDKIAACFANHTVCVLD 561
             V ++K G  + A + +    V D
Sbjct: 274 TSVSFSKSGRLLLAGYDDFNCNVWD 298

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 115/265 (43%), Gaps = 30/265 (11%)
Query: 311 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 370
           TL  H   I+++ W      L++ S D   I+WD  T       + H+ P L   W    
Sbjct: 61  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN-----KVHAIP-LRSSWVMTC 114
Query: 371 SFATS----STDNMIYVCKI-------GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 419
           ++A S    +   +  +C I       G  R  +  AGH G ++C ++     ++ S S 
Sbjct: 115 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SG 173
Query: 420 DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 479
           D T  +W+++  +       H+ ++ ++  +P            +  S + D++ KLWDV
Sbjct: 174 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAP---------DTRLFVSGACDASAKLWDV 224
Query: 480 ELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG---GI 536
             G    +  GH   + ++ F P G   A+GS D +  ++ L+  + + TY+ +    GI
Sbjct: 225 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI 284
Query: 537 FEVCWNKEGDKIAACFANHTVCVLD 561
             V ++K G  + A + +    V D
Sbjct: 285 TSVSFSKSGRLLLAGYDDFNCNVWD 309

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 115/265 (43%), Gaps = 30/265 (11%)
Query: 311 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 370
           TL  H   I+++ W      L++ S D   I+WD  T       + H+ P L   W    
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN-----KVHAIP-LRSSWVMTC 103
Query: 371 SFATS----STDNMIYVCKI-------GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 419
           ++A S    +   +  +C I       G  R  +  AGH G ++C ++     ++ S S 
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SG 162
Query: 420 DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 479
           D T  +W+++  +       H+ ++ ++  +P            +  S + D++ KLWDV
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAP---------DTRLFVSGACDASAKLWDV 213
Query: 480 ELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG---GI 536
             G    +  GH   + ++ F P G   A+GS D +  ++ L+  + + TY+ +    GI
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI 273
Query: 537 FEVCWNKEGDKIAACFANHTVCVLD 561
             V ++K G  + A + +    V D
Sbjct: 274 TSVSFSKSGRLLLAGYDDFNCNVWD 298

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 115/265 (43%), Gaps = 30/265 (11%)
Query: 311 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 370
           TL  H   I+++ W      L++ S D   I+WD  T       + H+ P L   W    
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN-----KVHAIP-LRSSWVMTC 103
Query: 371 SFATS----STDNMIYVCKI-------GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 419
           ++A S    +   +  +C I       G  R  +  AGH G ++C ++     ++ S S 
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SG 162
Query: 420 DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 479
           D T  +W+++  +       H+ ++ ++  +P            +  S + D++ KLWDV
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAP---------DTRLFVSGACDASAKLWDV 213
Query: 480 ELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG---GI 536
             G    +  GH   + ++ F P G   A+GS D +  ++ L+  + + TY+ +    GI
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI 273
Query: 537 FEVCWNKEGDKIAACFANHTVCVLD 561
             V ++K G  + A + +    V D
Sbjct: 274 TSVSFSKSGRLLLAGYDDFNCNVWD 298

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 111/241 (46%), Gaps = 25/241 (10%)
Query: 307 DLKC--TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 364
           DL C  TL  H G ++SL W  + +++++ S D   IVW+  T +     + H    ++ 
Sbjct: 55  DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMEC 114
Query: 365 DWR-NNVSFATSSTDNMIYVCKIGE------NRPI-KTFAGHQGEVNCVKWDPTG-SLLA 415
            +  N  S A    D+   +  +        N P+ +   GH+G  +  ++ P   + L 
Sbjct: 115 AFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLI 174
Query: 416 SCSDDVTAKIWNMKQDKYVHDLRE-----HSKEIYTIRWSPTGSGTNNPNQQLILASASF 470
           + S D T  +W++   + +          H+ ++ ++         N+ N  + + S S 
Sbjct: 175 TGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSL-------SINSLNANMFI-SGSC 226
Query: 471 DSTVKLWDVEL-GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKT 529
           D+TV+LWD+ +  + + + +GH   + S+ F P G+   +GS D +  ++ ++ G  ++ 
Sbjct: 227 DTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQV 286
Query: 530 Y 530
           Y
Sbjct: 287 Y 287

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 82.4 bits (202), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 97/213 (45%), Gaps = 12/213 (5%)
Query: 320 FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF-------HSGPTLDVDWRNNVSF 372
           FS K N+    L++GS DKT ++W +  EE    F         H+    D+       F
Sbjct: 31  FSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF 90
Query: 373 ATSST-DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 431
           A SS+ D  + +  +      K F GHQ EV  V + P    + S   +   K+WN+  +
Sbjct: 91  AISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE 150
Query: 432 -KYVHDLRE-HSKEIYTIRWSPTGSGTNNPNQ-QLILASASFDSTVKLWDVELGKLLYSL 488
            K+    +E HS  +  +R+SP     N         AS  +D  +K+W+    ++ Y+ 
Sbjct: 151 CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QIRYTF 209
Query: 489 NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 521
             H   V  L+ SP G+Y+A+G  DK + IW +
Sbjct: 210 KAHESNVNHLSISPNGKYIATGGKDKKLLIWDI 242

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 111/243 (45%), Gaps = 15/243 (6%)
Query: 308 LKCTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKTEEW-----KQQFEFHSGPT 361
           L+ TL  H G +  +    +  D +L+ S DKT I+W +  +E      ++    HS   
Sbjct: 30  LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 89
Query: 362 LDVDWRNNVSFATS-STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD 420
            DV   ++  FA S S D  + +  +      + F GH  +V  V +      + S S D
Sbjct: 90  SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD 149
Query: 421 VTAKIWN-MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 479
            T K+WN +   KY      HS+ +  +R+SP  S   NP    I+ S  +D  VK+W++
Sbjct: 150 KTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS---NP----IIVSCGWDKLVKVWNL 202
Query: 480 ELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEV 539
              KL  +  GH   + ++  SP G   ASG  D    +W L EGK + T  G   I  +
Sbjct: 203 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINAL 262
Query: 540 CWN 542
           C++
Sbjct: 263 CFS 265

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 111/243 (45%), Gaps = 15/243 (6%)
Query: 308 LKCTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKTEEW-----KQQFEFHSGPT 361
           L+ TL  H G +  +    +  D +L+ S DKT I+W +  +E      ++    HS   
Sbjct: 7   LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 66
Query: 362 LDVDWRNNVSFATS-STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD 420
            DV   ++  FA S S D  + +  +      + F GH  +V  V +      + S S D
Sbjct: 67  SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD 126
Query: 421 VTAKIWN-MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 479
            T K+WN +   KY      HS+ +  +R+SP  S   NP    I+ S  +D  VK+W++
Sbjct: 127 KTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS---NP----IIVSCGWDKLVKVWNL 179
Query: 480 ELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEV 539
              KL  +  GH   + ++  SP G   ASG  D    +W L EGK + T  G   I  +
Sbjct: 180 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINAL 239
Query: 540 CWN 542
           C++
Sbjct: 240 CFS 242

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 105/227 (46%), Gaps = 16/227 (7%)
Query: 315 HKGPIFSLKW--NKK--GDYLLTGSCDKTAIVWDVKTEEWKQQF--EFHSGPTLDVDWRN 368
           H   I+S+ W  NKK   + ++TGS D    VW  + E    Q+  E H    + VD  +
Sbjct: 31  HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISH 90
Query: 369 NVSFATSST-DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 427
            +  A SS+ D  I +  +   + IK+      +   + + P    LA+ +      I+ 
Sbjct: 91  TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG 150
Query: 428 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYS 487
           ++  K  + L    K I +I +SP G           LAS + D  + ++D+  GKLL++
Sbjct: 151 VESGKKEYSLDTRGKFILSIAYSPDGK---------YLASGAIDGIINIFDIATGKLLHT 201
Query: 488 LNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG 534
           L GH  P+ SL FSP  + L + S D  + I+ ++   +  T +G+ 
Sbjct: 202 LEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA 248

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 79.3 bits (194), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 116/246 (47%), Gaps = 23/246 (9%)
Query: 312 LSKHKGPIFSL---KWNKKGDYLLTGSCDKTAIVW----DVKTEEWK-----QQFEFHSG 359
           L+ H+G + SL   +  +    +++ S DKT + W    D  + E       ++ E HS 
Sbjct: 9   LTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSA 68
Query: 360 PTLDVDWRNNVSFATSST-DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS 418
              DV   NN +FA S++ D+ + +  +   +    F GH  +V  V + P    + S  
Sbjct: 69  FVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGG 128
Query: 419 DDVTAKIWNMKQDKYVHDLRE--HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKL 476
            D   ++WN+K +  +H L    H+  +  +R+SP+    + P    ++ S  +D+ VK+
Sbjct: 129 RDNALRVWNVKGE-CMHTLSRGAHTDWVSCVRFSPS---LDAP----VIVSGGWDNLVKV 180
Query: 477 WDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGI 536
           WD+  G+L+  L GH   V S+  SP G   AS   D    +W L +G+ +        I
Sbjct: 181 WDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPI 240
Query: 537 FEVCWN 542
            ++C++
Sbjct: 241 NQICFS 246

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 79.0 bits (193), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 105/224 (46%), Gaps = 16/224 (7%)
Query: 328 GDYLLTGSCDKTAIVWDVKTEE-----WKQQFEFHSGPTLDVDWRNNVSFATSST-DNMI 381
            D +++ S DK+ I+W +  ++      +++   HS    DV   ++  FA S + D  +
Sbjct: 395 ADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGEL 454
Query: 382 YVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN-MKQDKYV--HDLR 438
            +  +      + F GH  +V  V +      + S S D T K+WN + + KY       
Sbjct: 455 RLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGE 514
Query: 439 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSL 498
            H   +  +R+SP          Q  + SAS+D TVK+W++   KL  +L GH   V ++
Sbjct: 515 GHRDWVSCVRFSPN-------TLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTV 567
Query: 499 AFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWN 542
           A SP G   ASG  D  + +W L EGK + +   N  I  +C++
Sbjct: 568 AVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFS 611

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 116/253 (45%), Gaps = 11/253 (4%)
Query: 308 LKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWK-----QQFEFHSGPT 361
           L+ TL  H G + SL  +  + + LL+ S DKT I W +  ++ K     + F+ HS   
Sbjct: 9   LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 362 LDVDWRNNVSFATSST-DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD 420
            D     + ++A S++ D  + +  +      + F GH+ +V  V  D   S++ S S D
Sbjct: 69  QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 421 VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE 480
            T K+W +K  + +  L  H+  +  +R  P     ++    + + SA  D  VK W++ 
Sbjct: 129 KTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDD---SVTIISAGNDKMVKAWNLN 184
Query: 481 LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVC 540
             ++     GH   + +L  SP G  +AS   D  + +W+L   K + T +    +F + 
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLA 244
Query: 541 WNKEGDKIAACFA 553
           ++     +AA  A
Sbjct: 245 FSPNRYWLAAATA 257

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 116/253 (45%), Gaps = 11/253 (4%)
Query: 308 LKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWK-----QQFEFHSGPT 361
           L+ TL  H G + SL  +  + + LL+ S DKT I W +  ++ K     + F+ HS   
Sbjct: 9   LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 362 LDVDWRNNVSFATSST-DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD 420
            D     + ++A S++ D  + +  +      + F GH+ +V  V  D   S++ S S D
Sbjct: 69  QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 421 VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE 480
            T K+W +K  + +  L  H+  +  +R  P     ++    + + SA  D  VK W++ 
Sbjct: 129 KTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDD---SVTIISAGNDKMVKAWNLN 184
Query: 481 LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVC 540
             ++     GH   + +L  SP G  +AS   D  + +W+L   K + T +    +F + 
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLA 244
Query: 541 WNKEGDKIAACFA 553
           ++     +AA  A
Sbjct: 245 FSPNRYWLAAATA 257

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 116/253 (45%), Gaps = 11/253 (4%)
Query: 308 LKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWK-----QQFEFHSGPT 361
           L+ TL  H G + SL  +  + + LL+ S DKT I W +  ++ K     + F+ HS   
Sbjct: 9   LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 362 LDVDWRNNVSFATSST-DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD 420
            D     + ++A S++ D  + +  +      + F GH+ +V  V  D   S++ S S D
Sbjct: 69  QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 421 VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE 480
            T K+W +K  + +  L  H+  +  +R  P     ++    + + SA  D  VK W++ 
Sbjct: 129 KTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDD---SVTIISAGNDKMVKAWNLN 184
Query: 481 LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVC 540
             ++     GH   + +L  SP G  +AS   D  + +W+L   K + T +    +F + 
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLA 244
Query: 541 WNKEGDKIAACFA 553
           ++     +AA  A
Sbjct: 245 FSPNRYWLAAATA 257

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 85/200 (42%), Gaps = 21/200 (10%)
Query: 372 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 431
            A+   D  + V K      +     H+ EV C  +    S +A+CS D   KIW+    
Sbjct: 637 IASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG 696
Query: 432 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 491
           K VH   EHS+++    ++       N +  L+LA+ S D  +KLWD+   +   ++ GH
Sbjct: 697 KLVHTYDEHSEQVNCCHFT-------NKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGH 749
Query: 492 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG-------------IFE 538
              V    FSP  E LAS S D ++ +W ++     K+                   I +
Sbjct: 750 TNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVK 809
Query: 539 VC-WNKEGDKIAACFANHTV 557
            C W+ +GDKI     N  +
Sbjct: 810 CCSWSADGDKIIVAAKNKVL 829

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 116/253 (45%), Gaps = 11/253 (4%)
Query: 308 LKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWK-----QQFEFHSGPT 361
           L+ TL  H G + SL  +  + + LL+ S DKT I W +  ++ K     + F+ HS   
Sbjct: 3   LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 62
Query: 362 LDVDWRNNVSFATSST-DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD 420
            D     + ++A S++ D  + +  +      + F GH+ +V  V  D   S++ S S D
Sbjct: 63  QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 122
Query: 421 VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE 480
            T K+W +K  + +  L  H+  +  +R  P     ++    + + SA  D  VK W++ 
Sbjct: 123 KTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDD---SVTIISAGNDKMVKAWNLN 178
Query: 481 LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVC 540
             ++     GH   + +L  SP G  +AS   D  + +W+L   K + T +    +F + 
Sbjct: 179 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLA 238
Query: 541 WNKEGDKIAACFA 553
           ++     +AA  A
Sbjct: 239 FSPNRYWLAAATA 251

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 85/200 (42%), Gaps = 21/200 (10%)
Query: 372 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 431
            A+   D  + V K      +     H+ EV C  +    S +A+CS D   KIW+    
Sbjct: 630 IASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG 689
Query: 432 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 491
           K VH   EHS+++    ++       N +  L+LA+ S D  +KLWD+   +   ++ GH
Sbjct: 690 KLVHTYDEHSEQVNCCHFT-------NKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGH 742
Query: 492 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG-------------IFE 538
              V    FSP  E LAS S D ++ +W ++     K+                   I +
Sbjct: 743 TNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVK 802
Query: 539 VC-WNKEGDKIAACFANHTV 557
            C W+ +GDKI     N  +
Sbjct: 803 CCSWSADGDKIIVAAKNKVL 822

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 116/253 (45%), Gaps = 11/253 (4%)
Query: 308 LKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWK-----QQFEFHSGPT 361
           L+ TL  H G + SL  +  + + LL+ S DKT I W +  ++ K     + F+ HS   
Sbjct: 9   LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 362 LDVDWRNNVSFATSST-DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD 420
            D     + ++A S++ D  + +  +      + F GH+ +V  V  D   S++ S S D
Sbjct: 69  QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 421 VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE 480
            T K+W +K  + +  L  H+  +  +R  P     ++    + + SA  D  VK W++ 
Sbjct: 129 KTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDD---SVTIISAGNDKMVKAWNLN 184
Query: 481 LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVC 540
             ++     GH   + +L  SP G  +AS   D  + +W+L   K + T +    +F + 
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLA 244
Query: 541 WNKEGDKIAACFA 553
           ++     +AA  A
Sbjct: 245 FSPNRYWLAAATA 257

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 75.1 bits (183), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 114/253 (45%), Gaps = 11/253 (4%)
Query: 308 LKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWK-----QQFEFHSGPT 361
           L+ TL  H G + SL  +  + + LL+ S DKT I W +  ++ K     + F+ HS   
Sbjct: 9   LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 362 LDVDWRNNVSFATSST-DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD 420
            D     + ++A S++ D  + +  +      + F GH+ +V  V  D   S + S S D
Sbjct: 69  QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRD 128
Query: 421 VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE 480
            T K+W +K  + +  L  H+  +  +R  P     ++    + + SA  D  VK W++ 
Sbjct: 129 KTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDD---SVTIISAGNDKXVKAWNLN 184
Query: 481 LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVC 540
             ++     GH   + +L  SP G  +AS   D  + +W+L   K   T +    +F + 
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLA 244
Query: 541 WNKEGDKIAACFA 553
           ++     +AA  A
Sbjct: 245 FSPNRYWLAAATA 257

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 109/253 (43%), Gaps = 22/253 (8%)
Query: 278 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYLLT-GS 335
           ++++ W  EG  LA G+   + ++W      +   ++ H   + SL WN    Y+L+ GS
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGS 206
Query: 336 CDKTAIVWDVKTEEWK-QQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENR--- 390
                   DV+  E        HS     + W  +    A+   DN++ V          
Sbjct: 207 RSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGW 266
Query: 391 -PIKTFAGHQGEVNCVKWDPTGS-LLASC--SDDVTAKIWNMKQDKYVHDLREHSKEIYT 446
            P++TF  HQG V  V W P  S +LA+   + D   +IWN+     +  +  HS ++ +
Sbjct: 267 VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCS 325
Query: 447 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY 506
           I WSP         ++LI       + + +W       +  L GH   V SL  SP G  
Sbjct: 326 ILWSPH-------YKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGAT 378
Query: 507 LASGSLDKSMHIW 519
           +AS + D+++ +W
Sbjct: 379 VASAAADETLRLW 391

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 111/253 (43%), Gaps = 22/253 (8%)
Query: 278 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYLLT-GS 335
           ++++ W  EG  LA G+   + ++W      +   ++ H   + SL WN    Y+L+ GS
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGS 217
Query: 336 CDKTAIVWDVKTEEWK-QQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYV--CKIGENR- 390
                   DV+  E        HS     + W  +    A+   DN++ V     GE   
Sbjct: 218 RSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGW 277
Query: 391 -PIKTFAGHQGEVNCVKWDPTGS-LLASC--SDDVTAKIWNMKQDKYVHDLREHSKEIYT 446
            P++TF  HQG V  V W P  S +LA+   + D   +IWN+     +  +  HS ++ +
Sbjct: 278 VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCS 336
Query: 447 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY 506
           I WSP         ++LI       + + +W       +  L GH   V SL  SP G  
Sbjct: 337 ILWSPH-------YKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGAT 389
Query: 507 LASGSLDKSMHIW 519
           +AS + D+++ +W
Sbjct: 390 VASAAADETLRLW 402

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 72.4 bits (176), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 121/268 (45%), Gaps = 12/268 (4%)
Query: 267 VKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC-TLSKHKGPIFSLKWN 325
           +K   + +S  V  +D++     + T  Y G+  IW+    ++  ++   + P+ + K+ 
Sbjct: 5   IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFI 64
Query: 326 KKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCK 385
            + ++++ GS D    V++  T E    FE H      +       +  S +D++     
Sbjct: 65  ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 386 IGENRPI--KTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKYVHDLRE-HS 441
             EN     +TF GH+  V CV ++P   S  AS   D T K+W++ Q      L     
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 442 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFS 501
           + +  + + P       P++  ++ +AS D T+K+WD +    + +L GH   V    F 
Sbjct: 185 RGVNYVDYYPL------PDKPYMI-TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH 237
Query: 502 PTGEYLASGSLDKSMHIWSLKEGKIVKT 529
           PT   + SGS D ++ IW+    K+ KT
Sbjct: 238 PTLPIIISGSEDGTLKIWNSSTYKVEKT 265

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 72.0 bits (175), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 89/217 (41%), Gaps = 49/217 (22%)
Query: 312 LSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 370
           L  H+   + L WN     YLL+ S D T  +WD+                         
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDIN------------------------ 212
Query: 371 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMK 429
             AT     +I    I        F GH   V  V W     SL  S +DD    IW+ +
Sbjct: 213 --ATPKEHRVIDAKNI--------FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR 262
Query: 430 QD---KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-L 485
            +   K  H +  H+ E+  + +        NP  + ILA+ S D TV LWD+   KL L
Sbjct: 263 NNNTSKPSHTVDAHTAEVNCLSF--------NPYSEFILATGSADKTVALWDLRNLKLKL 314
Query: 486 YSLNGHREPVYSLAFSPTGE-YLASGSLDKSMHIWSL 521
           +S   H++ ++ + +SP  E  LAS   D+ +H+W L
Sbjct: 315 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 8/171 (4%)
Query: 387 GENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 445
           GE +P     GHQ E   + W+P     L S SDD T  +W++      H + + +K I+
Sbjct: 169 GECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVID-AKNIF 227
Query: 446 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE---LGKLLYSLNGHREPVYSLAFSP 502
           T   +       +   + +  S + D  + +WD       K  ++++ H   V  L+F+P
Sbjct: 228 TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNP 287
Query: 503 TGEY-LASGSLDKSMHIWSLKEGKI-VKTYTGNGG-IFEVCWNKEGDKIAA 550
             E+ LA+GS DK++ +W L+  K+ + ++  +   IF+V W+   + I A
Sbjct: 288 YSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA 338

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 71.6 bits (174), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 89/217 (41%), Gaps = 49/217 (22%)
Query: 312 LSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 370
           L  H+   + L WN     YLL+ S D T  +WD+                         
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDIN------------------------ 214
Query: 371 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMK 429
             AT     +I    I        F GH   V  V W     SL  S +DD    IW+ +
Sbjct: 215 --ATPKEHRVIDAKNI--------FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR 264
Query: 430 QD---KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-L 485
            +   K  H +  H+ E+  + +        NP  + ILA+ S D TV LWD+   KL L
Sbjct: 265 NNNTSKPSHTVDAHTAEVNCLSF--------NPYSEFILATGSADKTVALWDLRNLKLKL 316
Query: 486 YSLNGHREPVYSLAFSPTGE-YLASGSLDKSMHIWSL 521
           +S   H++ ++ + +SP  E  LAS   D+ +H+W L
Sbjct: 317 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 353

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 8/171 (4%)
Query: 387 GENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 445
           GE +P     GHQ E   + W+P     L S SDD T  +W++      H + + +K I+
Sbjct: 171 GECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVID-AKNIF 229
Query: 446 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE---LGKLLYSLNGHREPVYSLAFSP 502
           T   +       +   + +  S + D  + +WD       K  ++++ H   V  L+F+P
Sbjct: 230 TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNP 289
Query: 503 TGEY-LASGSLDKSMHIWSLKEGKI-VKTYTGNGG-IFEVCWNKEGDKIAA 550
             E+ LA+GS DK++ +W L+  K+ + ++  +   IF+V W+   + I A
Sbjct: 290 YSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA 340

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 110/257 (42%), Gaps = 22/257 (8%)
Query: 278 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYLLT-GS 335
           ++++ W  EG  LA G+   + ++W      +   ++ H   + SL WN    Y+L+ GS
Sbjct: 70  ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS---YILSSGS 126
Query: 336 CDKTAIVWDVKTEEWK-QQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENR--- 390
                   DV+  E        HS     + W  +    A+   DN++ V          
Sbjct: 127 RSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGW 186
Query: 391 -PIKTFAGHQGEVNCVKWDPTGS-LLASC--SDDVTAKIWNMKQDKYVHDLREHSKEIYT 446
            P++TF  HQG V  V W P  S +LA+   + D   +IWN+     +  +  HS ++ +
Sbjct: 187 VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCS 245
Query: 447 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY 506
           I WSP         ++LI       + + +W       +  L GH   V SL  SP G  
Sbjct: 246 ILWSPH-------YKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGAT 298
Query: 507 LASGSLDKSMHIWSLKE 523
           +AS + D+++ +W   E
Sbjct: 299 VASAAADETLRLWRCFE 315

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 89/217 (41%), Gaps = 49/217 (22%)
Query: 312 LSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 370
           L  H+   + L WN     YLL+ S D T  +WD+                         
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDIN------------------------ 216
Query: 371 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMK 429
             AT     +I    I        F GH   V  V W     SL  S +DD    IW+ +
Sbjct: 217 --ATPKEHRVIDAKNI--------FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR 266
Query: 430 QD---KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-L 485
            +   K  H +  H+ E+  + +        NP  + ILA+ S D TV LWD+   KL L
Sbjct: 267 NNNTSKPSHTVDAHTAEVNCLSF--------NPYSEFILATGSADKTVALWDLRNLKLKL 318
Query: 486 YSLNGHREPVYSLAFSPTGE-YLASGSLDKSMHIWSL 521
           +S   H++ ++ + +SP  E  LAS   D+ +H+W L
Sbjct: 319 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 355

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 8/171 (4%)
Query: 387 GENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 445
           GE +P     GHQ E   + W+P     L S SDD T  +W++      H + + +K I+
Sbjct: 173 GECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVID-AKNIF 231
Query: 446 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE---LGKLLYSLNGHREPVYSLAFSP 502
           T   +       +   + +  S + D  + +WD       K  ++++ H   V  L+F+P
Sbjct: 232 TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNP 291
Query: 503 TGEY-LASGSLDKSMHIWSLKEGKI-VKTYTGNGG-IFEVCWNKEGDKIAA 550
             E+ LA+GS DK++ +W L+  K+ + ++  +   IF+V W+   + I A
Sbjct: 292 YSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA 342

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 121/268 (45%), Gaps = 12/268 (4%)
Query: 267 VKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC-TLSKHKGPIFSLKWN 325
           +K   + +S  V  +D++     + T  Y G+  +W+    ++  ++   + P+ + K+ 
Sbjct: 5   IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFI 64
Query: 326 KKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCK 385
            + ++++ GS D    V++  T E    FE H      +       +  S +D++     
Sbjct: 65  ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 386 IGENRPI--KTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKYVHDLRE-HS 441
             EN     +TF GH+  V CV ++P   S  AS   D T K+W++ Q      L     
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 442 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFS 501
           + +  + + P       P++  ++ +AS D T+K+WD +    + +L GH   V    F 
Sbjct: 185 RGVNYVDYYPL------PDKPYMI-TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH 237
Query: 502 PTGEYLASGSLDKSMHIWSLKEGKIVKT 529
           PT   + SGS D ++ IW+    K+ KT
Sbjct: 238 PTLPIIISGSEDGTLKIWNSSTYKVEKT 265

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 121/268 (45%), Gaps = 12/268 (4%)
Query: 267 VKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC-TLSKHKGPIFSLKWN 325
           +K   + +S  V  +D++     + T  Y G+  +W+    ++  ++   + P+ + K+ 
Sbjct: 5   IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFI 64
Query: 326 KKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCK 385
            + ++++ GS D    V++  T E    FE H      +       +  S +D++     
Sbjct: 65  ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 386 IGENRPI--KTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKYVHDLRE-HS 441
             EN     +TF GH+  V CV ++P   S  AS   D T K+W++ Q      L     
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 442 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFS 501
           + +  + + P       P++  ++ +AS D T+K+WD +    + +L GH   V    F 
Sbjct: 185 RGVNYVDYYPL------PDKPYMI-TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH 237
Query: 502 PTGEYLASGSLDKSMHIWSLKEGKIVKT 529
           PT   + SGS D ++ IW+    K+ KT
Sbjct: 238 PTLPIIISGSEDGTLKIWNSSTYKVEKT 265

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 121/268 (45%), Gaps = 12/268 (4%)
Query: 267 VKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC-TLSKHKGPIFSLKWN 325
           +K   + +S  V  +D++     + T  Y G+  +W+    ++  ++   + P+ + K+ 
Sbjct: 5   IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFI 64
Query: 326 KKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCK 385
            + ++++ GS D    V++  T E    FE H      +       +  S +D++     
Sbjct: 65  ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 386 IGENRPI--KTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKYVHDLRE-HS 441
             EN     +TF GH+  V CV ++P   S  AS   D T K+W++ Q      L     
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 442 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFS 501
           + +  + + P       P++  ++ +AS D T+K+WD +    + +L GH   V    F 
Sbjct: 185 RGVNYVDYYPL------PDKPYMI-TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH 237
Query: 502 PTGEYLASGSLDKSMHIWSLKEGKIVKT 529
           PT   + SGS D ++ IW+    K+ KT
Sbjct: 238 PTLPIIISGSEDGTLKIWNSSTYKVEKT 265

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 119/284 (41%), Gaps = 48/284 (16%)
Query: 276 KDVTTLDWNGEGTLLATGSYDGQARIWSTNG--------DLKCTLSKHKGPIFSLKWNKK 327
           K + ++ W    +LLA GS+D    IW+           DL   +  H+  +  + W+  
Sbjct: 59  KAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSND 118
Query: 328 GDYLLTGSCDKTAIVWDVKTEEWKQQFEF------HSGPTLDVDWR-NNVSFATSSTDNM 380
           G YL T S DK+  +W+  T+E  +++E       HS     V W  +    A+SS D+ 
Sbjct: 119 GYYLATCSRDKSVWIWE--TDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDT 176
Query: 381 IYVCKIGEN--RPIKTFAGHQGEVNCVKWDPTGSLLASC--SDDVTAKIWNMKQDKYVHD 436
           + + K  ++    +    GH+G V    +D T  +   C  SDD T ++W    D    D
Sbjct: 177 VRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDE-DD 235
Query: 437 LRE----------HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-L 485
            +E          H +++Y + W   G          ++AS   D  + +++   G+  +
Sbjct: 236 QQEWVCEAILPDVHKRQVYNVAWGFNG----------LIASVGADGVLAVYEEVDGEWKV 285
Query: 486 YSLNGHREPVYSLAFSPTGEY-----LASGSLDKSMHIWSLKEG 524
           ++       VY +      E      LA+G  D  ++ WSL++ 
Sbjct: 286 FAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEKA 329

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 61/127 (48%), Gaps = 20/127 (15%)
Query: 408 DPTGSLLASCSDDVTAKIWNMKQDKY----VHDLREHSKEIYTIRWSPTGSGTNNPNQQL 463
           D +  +LA+ S D   K+ ++K D +    V D   H K I ++ W P  S         
Sbjct: 21  DFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTS--------- 71
Query: 464 ILASASFDSTVKLWDVELGK-------LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSM 516
           +LA+ SFDSTV +W  E          LL  + GH   V  +A+S  G YLA+ S DKS+
Sbjct: 72  LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSV 131
Query: 517 HIWSLKE 523
            IW   E
Sbjct: 132 WIWETDE 138

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 94/225 (41%), Gaps = 53/225 (23%)
Query: 305 NGDLKCTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD 363
           N DL+  L  H+   + L WN     +LL+ S D T  +WD+                  
Sbjct: 168 NPDLR--LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISA---------------- 209
Query: 364 VDWRNNVSFATSSTDNMIYVCKIGENRPIKT-FAGHQGEVNCVKWDPTG-SLLASCSDDV 421
                              V K G+    KT F GH   V  V W     SL  S +DD 
Sbjct: 210 -------------------VPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQ 250
Query: 422 TAKIWNMKQD---KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWD 478
              IW+ + +   K  H +  H+ E+  + +        NP  + ILA+ S D TV LWD
Sbjct: 251 KLMIWDTRSNNTSKPSHSVDAHTAEVNCLSF--------NPYSEFILATGSADKTVALWD 302
Query: 479 VELGKL-LYSLNGHREPVYSLAFSPTGE-YLASGSLDKSMHIWSL 521
           +   KL L+S   H++ ++ + +SP  E  LAS   D+ +++W L
Sbjct: 303 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL 347

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 87/176 (49%), Gaps = 18/176 (10%)
Query: 387 GENRPIKTFAGHQGEVNCVKWDP--TGSLLASCSDDVTAKIWNM----KQDKYVHDLREH 440
           GE  P     GHQ E   + W+P  +G LL S SDD T  +W++    K+ K V      
Sbjct: 165 GECNPDLRLRGHQKEGYGLSWNPNLSGHLL-SASDDHTICLWDISAVPKEGKVVD----- 218
Query: 441 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE---LGKLLYSLNGHREPVYS 497
           +K I+T   +     + +   + +  S + D  + +WD       K  +S++ H   V  
Sbjct: 219 AKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNC 278
Query: 498 LAFSPTGEY-LASGSLDKSMHIWSLKEGKI-VKTYTGNGG-IFEVCWNKEGDKIAA 550
           L+F+P  E+ LA+GS DK++ +W L+  K+ + ++  +   IF+V W+   + I A
Sbjct: 279 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA 334

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 96/224 (42%), Gaps = 51/224 (22%)
Query: 305 NGDLKCTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD 363
           N DL+  L  H+   + L WN     +LL+ S D T  +WD+            +GP   
Sbjct: 170 NPDLR--LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDIN-----------AGPK-- 214
Query: 364 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVT 422
                                KI + + I  F GH   V  V W     SL  S +DD  
Sbjct: 215 -------------------EGKIVDAKAI--FTGHSAVVEDVAWHLLHESLFGSVADDQK 253
Query: 423 AKIWNMKQD---KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 479
             IW+ + +   K  H +  H+ E+  + +        NP  + ILA+ S D TV LWD+
Sbjct: 254 LMIWDTRSNTTSKPSHLVDAHTAEVNCLSF--------NPYSEFILATGSADKTVALWDL 305
Query: 480 ELGKL-LYSLNGHREPVYSLAFSPTGE-YLASGSLDKSMHIWSL 521
              KL L++   H++ ++ + +SP  E  LAS   D+ +++W L
Sbjct: 306 RNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 18/176 (10%)
Query: 387 GENRPIKTFAGHQGEVNCVKWDP--TGSLLASCSDDVTAKIWNM----KQDKYVHDLREH 440
           GE  P     GHQ E   + W+   +G LL S SDD T  +W++    K+ K V      
Sbjct: 167 GECNPDLRLRGHQKEGYGLSWNSNLSGHLL-SASDDHTVCLWDINAGPKEGKIVD----- 220
Query: 441 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE---LGKLLYSLNGHREPVYS 497
           +K I+T   +       +   + +  S + D  + +WD       K  + ++ H   V  
Sbjct: 221 AKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNC 280
Query: 498 LAFSPTGEY-LASGSLDKSMHIWSLKEGKI-VKTYTGNGG-IFEVCWNKEGDKIAA 550
           L+F+P  E+ LA+GS DK++ +W L+  K+ + T+  +   IF+V W+   + I A
Sbjct: 281 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILA 336

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 96/224 (42%), Gaps = 51/224 (22%)
Query: 305 NGDLKCTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD 363
           N DL+  L  H+   + L WN     +LL+ S D T  +WD+            +GP   
Sbjct: 170 NPDLR--LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDIN-----------AGPK-- 214
Query: 364 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVT 422
                                KI + + I  F GH   V  V W     SL  S +DD  
Sbjct: 215 -------------------EGKIVDAKAI--FTGHSAVVEDVAWHLLHESLFGSVADDQK 253
Query: 423 AKIWNMKQD---KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 479
             IW+ + +   K  H +  H+ E+  + +        NP  + ILA+ S D TV LWD+
Sbjct: 254 LXIWDTRSNTTSKPSHLVDAHTAEVNCLSF--------NPYSEFILATGSADKTVALWDL 305
Query: 480 ELGKL-LYSLNGHREPVYSLAFSPTGE-YLASGSLDKSMHIWSL 521
              KL L++   H++ ++ + +SP  E  LAS   D+ +++W L
Sbjct: 306 RNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 18/176 (10%)
Query: 387 GENRPIKTFAGHQGEVNCVKWDP--TGSLLASCSDDVTAKIWNM----KQDKYVHDLREH 440
           GE  P     GHQ E   + W+   +G LL S SDD T  +W++    K+ K V      
Sbjct: 167 GECNPDLRLRGHQKEGYGLSWNSNLSGHLL-SASDDHTVCLWDINAGPKEGKIVD----- 220
Query: 441 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE---LGKLLYSLNGHREPVYS 497
           +K I+T   +       +   + +  S + D  + +WD       K  + ++ H   V  
Sbjct: 221 AKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNC 280
Query: 498 LAFSPTGEY-LASGSLDKSMHIWSLKEGKI-VKTYTGNGG-IFEVCWNKEGDKIAA 550
           L+F+P  E+ LA+GS DK++ +W L+  K+ + T+  +   IF+V W+   + I A
Sbjct: 281 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILA 336

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 98/236 (41%), Gaps = 43/236 (18%)
Query: 273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGD 329
           E S   T    +  G   A+G   G  RIW T      LK T+    GP+  + W+ +  
Sbjct: 57  EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSE-- 114
Query: 330 YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP-----TLDVDWRNNVSFATSSTDNMIY-- 382
                   + A V + + E +   F F +G      T      N+V F  S    +I   
Sbjct: 115 ------SKRIAAVGEGR-ERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGS 167
Query: 383 ---VCKIGENRPIK---TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN--------M 428
                 I E  P K   TF  H   V+ V+++P GSL AS   D T  ++N        +
Sbjct: 168 DDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGV 227
Query: 429 KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL 484
            +D  + ++  HS  ++ + WSP G+          +ASAS D T+K+W+V   K+
Sbjct: 228 FEDDSLKNV-AHSGSVFGLTWSPDGTK---------IASASADKTIKIWNVATLKV 273

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 87/220 (39%), Gaps = 22/220 (10%)
Query: 323 KWNKKGDYLLTGSCDKTAIVWDVK--TEEWKQQFEFHSGPTLDVDW---RNNVSFATSST 377
           K +  G Y  +G       +WD    T   K      SGP  D+ W      ++      
Sbjct: 66  KTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGR 125
Query: 378 DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSL-LASCSDDVTAKIWNMKQDKYVHD 436
           +   +V             G    +N V + P+    + S SDD T  I+     K+   
Sbjct: 126 ERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKST 185
Query: 437 LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN------- 489
             EH+K ++++R++P GS         + AS   D T+ L++   G              
Sbjct: 186 FGEHTKFVHSVRYNPDGS---------LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNV 236
Query: 490 GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKT 529
            H   V+ L +SP G  +AS S DK++ IW++   K+ KT
Sbjct: 237 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKT 276

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/225 (19%), Positives = 85/225 (37%), Gaps = 46/225 (20%)
Query: 381 IYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV--HDLR 438
           +Y   +G     + +  H  +    K  P+G   AS       +IW+  Q  ++    + 
Sbjct: 41  VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIP 100
Query: 439 EHSKEIYTIRWSP----------------------TGSGTNN--------------PNQQ 462
             S  +  I W                        TG+   N              P++ 
Sbjct: 101 VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRP 160
Query: 463 LILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK 522
             + S S D+TV +++    K   +   H + V+S+ ++P G   AS   D ++ +++  
Sbjct: 161 FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV 220
Query: 523 EGK--------IVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCV 559
           +G          +K    +G +F + W+ +G KIA+  A+ T+ +
Sbjct: 221 DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKI 265

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 117/265 (44%), Gaps = 20/265 (7%)
Query: 273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYL 331
           ++S  V ++ W+ +G+ L+ G  +G   I+      K  T++ H+  +  L WN+    L
Sbjct: 132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRH--VL 189
Query: 332 LTGSCDKTAIVWDVKTEEWK-QQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGEN 389
            +GS        DV+    +    + HS     + WR++ +  A+   DN++ +     +
Sbjct: 190 SSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS 249
Query: 390 RPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKI--WNMKQDKYVHDLREHSKEIYT 446
            P  T   H   V  V W P   +LLA+    +  +I  WN      V+ + +   ++ +
Sbjct: 250 IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV-DAGSQVTS 308
Query: 447 IRWSPTGSGTNNPNQQLILASASF-DSTVKLWDVELGKLLYSLN--GHREPVYSLAFSPT 503
           + WSP        + + I+++  F D+ + +W      L   ++   H   V   A SP 
Sbjct: 309 LIWSP--------HSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPD 360
Query: 504 GEYLASGSLDKSMHIWSLKEGKIVK 528
           G  L++ + D+++  W + +G  VK
Sbjct: 361 GRILSTAASDENLKFWRVYDGDHVK 385

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 83/190 (43%), Gaps = 16/190 (8%)
Query: 364 VDWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVT 422
           V W ++ SF +    N ++ +  +     ++T AGHQ  V C+ W+    +L+S S    
Sbjct: 140 VKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGA 197
Query: 423 AKIWNMK-QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL 481
               +++  +  +  L+ HS E+  + W   G         L LAS   D+ V++WD   
Sbjct: 198 IHHHDVRIANHQIGTLQGHSSEVCGLAWRSDG---------LQLASGGNDNVVQIWDARS 248
Query: 482 GKLLYSLNGHREPVYSLAFSPTGEYLAS---GSLDKSMHIWSLKEGKIVKTYTGNGGIFE 538
               ++   H   V ++A+ P    L +   G++DK +H W+   G  V T      +  
Sbjct: 249 SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTS 308
Query: 539 VCWNKEGDKI 548
           + W+    +I
Sbjct: 309 LIWSPHSKEI 318

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 73/153 (47%), Gaps = 20/153 (13%)
Query: 385 KIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDLRE---- 439
           ++ +N P+    GH   V  + W P   +++AS S+D T  +W +     V  LRE    
Sbjct: 69  RVDKNVPL--VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVIT 126
Query: 440 ---HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL--NGHREP 494
              H+K +  + W PT         Q +L SA  D+ + +WDV  G  + +L  + H + 
Sbjct: 127 LEGHTKRVGIVAWHPTA--------QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDT 178
Query: 495 VYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV 527
           +YS+ +S  G  + +   DK + +   ++G +V
Sbjct: 179 IYSVDWSRDGALICTSCRDKRVRVIEPRKGTVV 211

>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 96/254 (37%), Gaps = 59/254 (23%)
Query: 287 GTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWN--KKGDYLLTGSCDKTAI 341
           G  LAT S D   +I+   G+   L  TL+ H+GP++ + W   K G  L + S D   +
Sbjct: 23  GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82
Query: 342 VWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGE 401
           +W  +   W Q                                       I   A H   
Sbjct: 83  IWKEENGRWSQ---------------------------------------IAVHAVHSAS 103
Query: 402 VNCVKWDP--TGSLLASCSDDVTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPT----G 453
           VN V+W P   G LL   S D    +   K++       +  H+  + +  W+P      
Sbjct: 104 VNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 163
Query: 454 SGTNNPNQQLILASASFDSTVKLW----DVELGKLLYSLNGHREPVYSLAFSPT---GEY 506
              N   +     +   D+ VK+W    D +   L  +L GH + V  +A+SPT     Y
Sbjct: 164 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY 223
Query: 507 LASGSLDKSMHIWS 520
           LAS S D++  IW+
Sbjct: 224 LASVSQDRTCIIWT 237

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 96/254 (37%), Gaps = 59/254 (23%)
Query: 287 GTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWN--KKGDYLLTGSCDKTAI 341
           G  LAT S D   +I+   G+   L  TL+ H+GP++ + W   K G  L + S D   +
Sbjct: 21  GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80
Query: 342 VWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGE 401
           +W  +   W Q                                       I   A H   
Sbjct: 81  IWKEENGRWSQ---------------------------------------IAVHAVHSAS 101
Query: 402 VNCVKWDP--TGSLLASCSDDVTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPT----G 453
           VN V+W P   G LL   S D    +   K++       +  H+  + +  W+P      
Sbjct: 102 VNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161
Query: 454 SGTNNPNQQLILASASFDSTVKLW----DVELGKLLYSLNGHREPVYSLAFSPT---GEY 506
              N   +     +   D+ VK+W    D +   L  +L GH + V  +A+SPT     Y
Sbjct: 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY 221
Query: 507 LASGSLDKSMHIWS 520
           LAS S D++  IW+
Sbjct: 222 LASVSQDRTCIIWT 235

>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 96/254 (37%), Gaps = 59/254 (23%)
Query: 287 GTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWN--KKGDYLLTGSCDKTAI 341
           G  LAT S D   +I+   G+   L  TL+ H+GP++ + W   K G  L + S D   +
Sbjct: 21  GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80
Query: 342 VWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGE 401
           +W  +   W Q                                       I   A H   
Sbjct: 81  IWKEENGRWSQ---------------------------------------IAVHAVHSAS 101
Query: 402 VNCVKWDP--TGSLLASCSDDVTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPT----G 453
           VN V+W P   G LL   S D    +   K++       +  H+  + +  W+P      
Sbjct: 102 VNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161
Query: 454 SGTNNPNQQLILASASFDSTVKLW----DVELGKLLYSLNGHREPVYSLAFSPT---GEY 506
              N   +     +   D+ VK+W    D +   L  +L GH + V  +A+SPT     Y
Sbjct: 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY 221
Query: 507 LASGSLDKSMHIWS 520
           LAS S D++  IW+
Sbjct: 222 LASVSQDRTCIIWT 235

>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 96/254 (37%), Gaps = 59/254 (23%)
Query: 287 GTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWN--KKGDYLLTGSCDKTAI 341
           G  +AT S D   +I+   G+   L  TL+ H+GP++ + W   K G  L + S D   +
Sbjct: 21  GKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80
Query: 342 VWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGE 401
           +W  +   W Q                                       I   A H   
Sbjct: 81  IWKEENGRWSQ---------------------------------------IAVHAVHSAS 101
Query: 402 VNCVKWDP--TGSLLASCSDDVTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPT----G 453
           VN V+W P   G +L   S D    +   K++       +  H+  + +  W+P      
Sbjct: 102 VNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161
Query: 454 SGTNNPNQQLILASASFDSTVKLW----DVELGKLLYSLNGHREPVYSLAFSPT---GEY 506
              N   +     +   D+ VK+W    D +   L  +L GH + V  +A+SPT     Y
Sbjct: 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY 221
Query: 507 LASGSLDKSMHIWS 520
           +AS S D++  IW+
Sbjct: 222 MASVSQDRTCIIWT 235

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 115/290 (39%), Gaps = 51/290 (17%)
Query: 276 KDVTTLDWNGEGTLLATGSYDGQARIW-STNGDLKCTLSKHKGPIFSLKWNKKGDYLLTG 334
           + +T + +N EG LL + S D  A +W S NG+   TL  H G I+S+  +    Y +TG
Sbjct: 33  RPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTG 92
Query: 335 SCDKTAIVWDVKTEE----WKQQFEFHSGPTLDVDWRNNVSFATSSTDNM--------IY 382
           S D +  +WDV   +    WK        P   V++    ++  +  DN+        IY
Sbjct: 93  SADYSIKLWDVSNGQCVATWKSPV-----PVKRVEFSPCGNYFLAILDNVMKNPGSINIY 147
Query: 383 ----------VCKIGENRPIKTFAGHQG--EVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 430
                     + K+ E  PI     H+G        W   G  + +   D     +++  
Sbjct: 148 EIERDSATHELTKVSE-EPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSN 206
Query: 431 D-KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN 489
           + +YV  +  H K I  +++SP               ++S D+   L DV   ++L    
Sbjct: 207 NYEYVDSIDLHEKSISDMQFSP---------DLTYFITSSRDTNSFLVDVSTLQVLKKYE 257
Query: 490 GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEV 539
               P+ +   +P  E++  G           +E K V T + N G FE 
Sbjct: 258 TDC-PLNTAVITPLKEFIILG---------GGQEAKDVTTTSANEGKFEA 297

>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX Length = 349

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 22/151 (14%)
Query: 396 AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL----REHSKEIYTIRWSP 451
           +GH   V+ V +D  G  +A+CS D   K++ + +D    +L    R H   I  I W+ 
Sbjct: 6   SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWA- 64
Query: 452 TGSGTNNPNQQLILASASFDSTVKLWDVELGK---------LLYSLNGHREPVYSLAFSP 502
                 +P    I+ASAS+D TVKLW+ +  +          L +LN  +  +YS+ F+P
Sbjct: 65  ------SPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAP 118
Query: 503 T--GEYLASGSLDKSMHIWSLKEGKIVKTYT 531
              G  LA    D  + ++   E   ++++T
Sbjct: 119 AHLGLKLACLGNDGILRLYDALEPSDLRSWT 149

>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space Group P21 Length = 351

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 22/151 (14%)
Query: 396 AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL----REHSKEIYTIRWSP 451
           +GH   V+ V +D  G  +A+CS D   K++ + +D    +L    R H   I  I W+ 
Sbjct: 8   SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWA- 66
Query: 452 TGSGTNNPNQQLILASASFDSTVKLWDVELGK---------LLYSLNGHREPVYSLAFSP 502
                 +P    I+ASAS+D TVKLW+ +  +          L +LN  +  +YS+ F+P
Sbjct: 67  ------SPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAP 120
Query: 503 T--GEYLASGSLDKSMHIWSLKEGKIVKTYT 531
              G  LA    D  + ++   E   ++++T
Sbjct: 121 AHLGLKLACLGNDGILRLYDALEPSDLRSWT 151

>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space Group P21212 Length = 351

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 22/151 (14%)
Query: 396 AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL----REHSKEIYTIRWSP 451
           +GH   V+ V +D  G  +A+CS D   K++ + +D    +L    R H   I  I W+ 
Sbjct: 8   SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWA- 66
Query: 452 TGSGTNNPNQQLILASASFDSTVKLWDVELGK---------LLYSLNGHREPVYSLAFSP 502
                 +P    I+ASAS+D TVKLW+ +  +          L +LN  +  +YS+ F+P
Sbjct: 67  ------SPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAP 120
Query: 503 T--GEYLASGSLDKSMHIWSLKEGKIVKTYT 531
              G  LA    D  + ++   E   ++++T
Sbjct: 121 AHLGLKLACLGNDGILRLYDALEPSDLRSWT 151

>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 110/274 (40%), Gaps = 50/274 (18%)
Query: 287 GTLLATGSYDGQARIWST-NGD--LKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAI 341
           GT LAT S D   +I+   NG   L   L  H+GP++ + W     G+ L + S D+  I
Sbjct: 25  GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVI 84
Query: 342 VWDVKTEEWKQQFEF--HSGPTLDVDWRNN---VSFATSSTDNMIYVCKI---GENRPIK 393
           +W  +   W++  E   H      V W  +   +  A  S+D  I +      G+    K
Sbjct: 85  IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKK 144
Query: 394 TFAGHQGEVNCVKWDPT---GSLL--------------ASCSDDVTAKIWNMKQD---KY 433
               H    N V W P    GSL+              AS   D   K+W  ++D   K 
Sbjct: 145 INNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKE 204
Query: 434 VHDLREHSKEIYTIRWSPT-GSGTNNPNQQLILASASFDSTVKLWDVELG-------KLL 485
              L  HS  +  + W+P+ G  T+       +AS S D  V +W  +         KLL
Sbjct: 205 EQKLEAHSDWVRDVAWAPSIGLPTST------IASCSQDGRVFIWTCDDASSNTWSPKLL 258
Query: 486 YSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIW 519
           +  N   + V+ +++S T   LA    D  + +W
Sbjct: 259 HKFN---DVVWHVSWSITANILAVSGGDNKVTLW 289

>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 465 LASASFDSTVKLWDVELGK--LLYSLNGHREPVYSLAFSPT--GEYLASGSLDKSMHIWS 520
           LA+ S D +VK++DV  G   L+  L GH  PV+ +A++    G  LAS S D+ + IW 
Sbjct: 28  LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87
Query: 521 LKEGKIVKTYTGNG---GIFEVCW 541
            + G   K++   G    +  VCW
Sbjct: 88  EENGTWEKSHEHAGHDSSVNSVCW 111

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 110/275 (40%), Gaps = 76/275 (27%)
Query: 290 LATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE 348
           +A+ S DG  R+WS +   L   +   +G + S+ ++ + + LL G  D           
Sbjct: 32  VASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTXI-------- 83
Query: 349 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWD 408
                    +G  L         FATS  D            P+ T  GHQG V  + + 
Sbjct: 84  ---------NGVPL---------FATSGED------------PLYTLIGHQGNVCSLSFQ 113
Query: 409 PTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY-------------------TIR- 448
               ++ S S D TAK+W  K+   V++L+ H+  ++                   TI+ 
Sbjct: 114 D--GVVISGSWDKTAKVW--KEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKL 169
Query: 449 WS-----PTGSGTNNPNQQLI-------LASASFDSTVKLWDVELGKLLYSLNGHREPVY 496
           W       T SG +N   + +         S S D  +KL D   G +L +  GH   VY
Sbjct: 170 WQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVY 229
Query: 497 SLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT 531
            +   P G+ ++ G  D+++ IWS + G + +  T
Sbjct: 230 CIKLLPNGDIVSCGE-DRTVRIWSKENGSLKQVIT 263

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 287 GTLLATGSYDGQARIWSTNGDLKCTLSK----HKGPIFSLKWNKKGDYLLTGSCDKTAIV 342
           G  L  GS+    R W    D   T+ K    H GP+  + W+  G  + T SCDKTA +
Sbjct: 54  GNFLIAGSWANDVRCWEVQ-DSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKM 112
Query: 343 WDVKTEEWKQQFEFHSGPTLDVDW 366
           WD+ + +   Q   H  P   + W
Sbjct: 113 WDLSSNQ-AIQIAQHDAPVKTIHW 135

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 398 HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTN 457
           H G V  V W   GS + + S D TAK+W++  ++ +  + +H   + TI W        
Sbjct: 85  HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHW------IK 137
Query: 458 NPNQQLILASASFDSTVKLWDVE 480
            PN   ++ + S+D T+K WD  
Sbjct: 138 APNYSCVM-TGSWDKTLKFWDTR 159

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 93/246 (37%), Gaps = 44/246 (17%)
Query: 315 HKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQF-------------EFHSGP 360
           H G I +L     +G Y+L+G  D   +++D++    +  +             + H   
Sbjct: 42  HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101
Query: 361 TLDVDW--RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS---LLA 415
              V W   +   F +SS D  + V      +    F   +  V      P  +   L+A
Sbjct: 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVF-NFEETVYSHHMSPVSTKHCLVA 160
Query: 416 SCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVK 475
             +     ++ ++K     H L+ H +EI  + WSP            ILA+AS DS VK
Sbjct: 161 VGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP--------RYDYILATASADSRVK 212
Query: 476 LWDVELGK-LLYSLN---------------GHREPVYSLAFSPTGEYLASGSLDKSMHIW 519
           LWDV      L +L+                H   V  L F+  G +L +   D  M +W
Sbjct: 213 LWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW 272
Query: 520 SLKEGK 525
           +   G+
Sbjct: 273 NSSNGE 278

>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR Ck0944636 Length = 372

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/265 (21%), Positives = 101/265 (38%), Gaps = 55/265 (20%)
Query: 283 WNGEGTLLATGSYDGQARIWSTNGDLKCT---LSKHKGPIFSLKWNKKGDYLLTGSCDKT 339
           WN + T +A    + +  I+  +G+       L +H G +  + W    + ++T   D+ 
Sbjct: 16  WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVTCGTDRN 75
Query: 340 AIVWDVKTEEWKQQFEFH--SGPTLDVDWR-NNVSFATSSTDNMIYVCKIGE-------- 388
           A VW +K   WK        +     V W  N   FA  S   +I +C   +        
Sbjct: 76  AYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK 135
Query: 389 --NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT 446
              +PI++       V  + W P   LLA+ S D   +I++     Y+ ++ E       
Sbjct: 136 HIKKPIRS------TVLSLDWHPNSVLLAAGSCDFKCRIFS----AYIKEVEE------- 178
Query: 447 IRWSPTGSGTNNPNQQLILASA---------------------SFDSTVKLWDVELGKLL 485
            R +PT  G+  P  +L+  S+                     S DSTV L D +    +
Sbjct: 179 -RPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV 237
Query: 486 YSLNGHREPVYSLAFSPTGEYLASG 510
            +L     P+ ++ F      +A+G
Sbjct: 238 ATLASETLPLLAVTFITESSLVAAG 262

>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR Ck0944636 Length = 372

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 74/185 (40%), Gaps = 26/185 (14%)
Query: 398 HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL--REHSKEIYTIRWSPTGSG 455
           H G+V  + W P  + + +C  D  A +W +K   +   L     ++    +RW+P    
Sbjct: 51  HNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKK 110
Query: 456 TNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKS 515
               +   +++   F+     W  +  K        R  V SL + P    LA+GS D  
Sbjct: 111 FAVGSGSRVISICYFEQENDWWVCKHIK-----KPIRSTVLSLDWHPNSVLLAAGSCDFK 165
Query: 516 MHIWS--LKEGK-----------------IVKTYTGNGGIFEVCWNKEGDKIAACFANHT 556
             I+S  +KE +                 + ++ +  G +  VC++  G ++A    + T
Sbjct: 166 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST 225
Query: 557 VCVLD 561
           VC+ D
Sbjct: 226 VCLAD 230

>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX Length = 372

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/265 (21%), Positives = 101/265 (38%), Gaps = 55/265 (20%)
Query: 283 WNGEGTLLATGSYDGQARIWSTNGDLKCT---LSKHKGPIFSLKWNKKGDYLLTGSCDKT 339
           WN + T +A    + +  I+  +G+       L +H G +  + W    + ++T   D+ 
Sbjct: 16  WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRN 75
Query: 340 AIVWDVKTEEWKQQFEFH--SGPTLDVDWR-NNVSFATSSTDNMIYVCKIGE-------- 388
           A VW +K   WK        +     V W  N   FA  S   +I +C   +        
Sbjct: 76  AYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK 135
Query: 389 --NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT 446
              +PI++       V  + W P   LLA+ S D   +I++     Y+ ++ E       
Sbjct: 136 HIKKPIRS------TVLSLDWHPNSVLLAAGSCDFKCRIFS----AYIKEVEE------- 178
Query: 447 IRWSPTGSGTNNPNQQLILASA---------------------SFDSTVKLWDVELGKLL 485
            R +PT  G+  P  +L+  S+                     S DSTV L D +    +
Sbjct: 179 -RPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV 237
Query: 486 YSLNGHREPVYSLAFSPTGEYLASG 510
            +L     P+ ++ F      +A+G
Sbjct: 238 ATLASETLPLLAVTFITESSLVAAG 262

>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX Length = 372

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 74/185 (40%), Gaps = 26/185 (14%)
Query: 398 HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL--REHSKEIYTIRWSPTGSG 455
           H G+V  V W P  + + +C  D  A +W +K   +   L     ++    +RW+P    
Sbjct: 51  HNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKK 110
Query: 456 TNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKS 515
               +   +++   F+     W  +  K        R  V SL + P    LA+GS D  
Sbjct: 111 FAVGSGSRVISICYFEQENDWWVCKHIK-----KPIRSTVLSLDWHPNSVLLAAGSCDFK 165
Query: 516 MHIWS--LKEGK-----------------IVKTYTGNGGIFEVCWNKEGDKIAACFANHT 556
             I+S  +KE +                 + ++ +  G +  VC++  G ++A    + T
Sbjct: 166 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST 225
Query: 557 VCVLD 561
           VC+ D
Sbjct: 226 VCLAD 230

>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 92/254 (36%), Gaps = 59/254 (23%)
Query: 287 GTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWN--KKGDYLLTGSCDKTAI 341
           G   AT S D   +I+   G+   L  TL+ H+GP++ + W   K G  L + S D    
Sbjct: 21  GKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVX 80
Query: 342 VWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGE 401
           +W  +   W Q                                       I   A H   
Sbjct: 81  IWKEENGRWSQ---------------------------------------IAVHAVHSAS 101
Query: 402 VNCVKWDP--TGSLLASCSDDVTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPT----G 453
           VN V+W P   G  L   S D    +   K++       +  H+  + +  W+P      
Sbjct: 102 VNSVQWAPHEYGPXLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161
Query: 454 SGTNNPNQQLILASASFDSTVKLW----DVELGKLLYSLNGHREPVYSLAFSPT---GEY 506
              N   +     +   D+ VK+W    D +   L  +L GH + V  +A+SPT     Y
Sbjct: 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY 221
Query: 507 LASGSLDKSMHIWS 520
            AS S D++  IW+
Sbjct: 222 XASVSQDRTCIIWT 235

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Query: 438 REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYS 497
           + H  EI  +++ P+G           L S+S D  +K+W V+ G    +L GHR  V  
Sbjct: 133 QAHVSEITKLKFFPSGEA---------LISSSQDMQLKIWSVKDGSNPRTLIGHRATVTD 183
Query: 498 LAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY 530
           +A    G  + S SLD ++ +W    G  + T+
Sbjct: 184 IAIIDRGRNVLSASLDGTIRLWECGTGTTIHTF 216

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 25/169 (14%)
Query: 357 HSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGE-------NRPIKTFAGHQGEVNCVKW 407
           H+ P LD+ W   N+   A+ S D  + V +I +         P+ T  GH   V  V W
Sbjct: 80  HTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAW 139
Query: 408 DPTG-SLLASCSDDVTAKIWNMKQDKYVHDLRE--HSKEIYTIRWSPTGSGTNNPNQQLI 464
            PT  ++L S   D    +W++     V  L    H   IY++ WS  G+         +
Sbjct: 140 HPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGA---------L 190
Query: 465 LASASFDSTVKLWDVELGKLLYSLNGHRE---PVYSLAFSPTGEYLASG 510
           + ++  D  V++ +   G ++   +   E   PV+++ F   G+ L +G
Sbjct: 191 ICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAV-FVSEGKILTTG 238

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Query: 438 REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYS 497
           + H  EI  +++ P+G           L S+S D  +K+W V+ G    +L GHR  V  
Sbjct: 136 QAHVSEITKLKFFPSGEA---------LISSSQDMQLKIWSVKDGSNPRTLIGHRATVTD 186
Query: 498 LAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY 530
           +A    G  + S SLD ++ +W    G  + T+
Sbjct: 187 IAIIDRGRNVLSASLDGTIRLWECGTGTTIHTF 219

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 88/215 (40%), Gaps = 20/215 (9%)
Query: 319 IFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP----TLDVDWRNNVSFAT 374
           I S K    G  L+ G    T  +WD+     + + E  S       L +   + V F+ 
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSC 159
Query: 375 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV 434
            S D  I V  +     ++ F GH    +C+     G+ L +   D T + W++++ +  
Sbjct: 160 CS-DGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR-- 216
Query: 435 HDLREH--SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR 492
             L++H  + +I+++ + PTG           LA     S V++  V      Y L+ H 
Sbjct: 217 -QLQQHDFTSQIFSLGYCPTGE---------WLAVGMESSNVEVLHVNKPD-KYQLHLHE 265
Query: 493 EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV 527
             V SL F+  G++  S   D  ++ W    G  +
Sbjct: 266 SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/161 (21%), Positives = 63/161 (39%), Gaps = 11/161 (6%)
Query: 402 VNCVKWDPTGSLLASCSDDVTAKIWNMKQD--KYVHDLREHSKEIYTIRWSPTGSGTNNP 459
           +   K  P G  L    +  T  IW++     +   +L   +   Y +  SP        
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK----- 154
Query: 460 NQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIW 519
               +  S   D  + +WD+    L+    GH +    +  S  G  L +G LD ++  W
Sbjct: 155 ----VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSW 210
Query: 520 SLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVL 560
            L+EG+ ++ +     IF + +   G+ +A    +  V VL
Sbjct: 211 DLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVL 251

>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex Length = 436

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 13/116 (11%)
Query: 412 SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD 471
           S +    D+V   I      K + +LR H K++  +          NP     LA+AS D
Sbjct: 222 SRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHV--------ALNPCCDWFLATASVD 273
Query: 472 STVKLWDVEL----GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE 523
            TVK+WD+         LYSL  HR PV +  FSP G  L +      + ++S  +
Sbjct: 274 QTVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQKSEIRVYSASQ 328

>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 436

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 13/116 (11%)
Query: 412 SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD 471
           S +    D+V   I      K + +LR H K++  +          NP     LA+AS D
Sbjct: 221 SRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHV--------ALNPCCDWFLATASVD 272
Query: 472 STVKLWDVEL----GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE 523
            TVK+WD+         LYSL  HR PV +  FSP G  L +      + ++S  +
Sbjct: 273 QTVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQKSEIRVYSASQ 327

>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 435

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 13/116 (11%)
Query: 412 SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD 471
           S +    D+V   I      K + +LR H K++  +          NP     LA+AS D
Sbjct: 221 SRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHV--------ALNPCCDWFLATASVD 272
Query: 472 STVKLWDVEL----GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE 523
            TVK+WD+         LYSL  HR PV +  FSP G  L +      + ++S  +
Sbjct: 273 QTVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQKSEIRVYSASQ 327

>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/272 (19%), Positives = 116/272 (42%), Gaps = 38/272 (13%)
Query: 281 LDWNGEGTLLATGSYDGQARIWSTNG-----DLKCTLSKHKGPIFSLKWNKKGDYLL-TG 334
           LDW+    ++A    +G   ++STN      +     S H   + ++K+N K D +L +G
Sbjct: 73  LDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASG 132
Query: 335 SCDKTAIVWDVK--TEEWKQQFEFHSGPTL-------DVDWRNNVS--FATSSTDNMIYV 383
             +    +WD+   TE          G ++        + W  +++  FA++ + N   +
Sbjct: 133 GNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASI 192
Query: 384 CKIGENRPIKTF------AGHQGEVNCVKWDPTGSLLASCS----DDVTAKIWNMKQ-DK 432
             +   + +         +G + +++ V+W P  S   + +    +D +  IW+++  + 
Sbjct: 193 WDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT 252
Query: 433 YVHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 491
            +  L + H K I ++ W        + ++ L+L+S   D+TV LW+ E  + L      
Sbjct: 253 PLQTLNQGHQKGILSLDWC-------HQDEHLLLSSGR-DNTVLLWNPESAEQLSQFPAR 304
Query: 492 REPVYSLAFSPTG-EYLASGSLDKSMHIWSLK 522
               +   F+P   +  A  S D  + + +L+
Sbjct: 305 GNWCFKTKFAPEAPDLFACASFDNKIEVQTLQ 336

>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking The Arp2 Subunit Length = 377

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 67/161 (41%), Gaps = 24/161 (14%)
Query: 372 FATSSTDNMIYVCKIGEN--RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK 429
           F T++  N + + +   N  +  +TF+ H   V CV W P  + + +CS D  A ++  +
Sbjct: 26  FVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85
Query: 430 QD---KYVHDLREHSKEIYTIRWSP------TGSGTNNPNQQLILASASFDSTVKLW-DV 479
            D   K    L   ++    +RWSP       GSG        +++   F+     W   
Sbjct: 86  PDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGAR------VISVCYFEQENDWWVSK 139
Query: 480 ELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS 520
            L + L      R  + SL + P    LA+G  D+  ++ S
Sbjct: 140 HLKRPL------RSTILSLDWHPNNVLLAAGCADRKAYVLS 174

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	564
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
2xtc_A	90	F-box-like/WD repeat-containing protein TBL1X; tra	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.98
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.98
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.96
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.95
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.94
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.93
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.93
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.93
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.93
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.92
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.92
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.92
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.92
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.92
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.91
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.91
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.91
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.91
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.9
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.89
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.89
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.89
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.89
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.88
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.88
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.87
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.87
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.87
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.86
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.86
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.85
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.85
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.84
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.82
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.82
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.81
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.81
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.81
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.81
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.8
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.8
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.79
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.78
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.76
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.76
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.75
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.75
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.75
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.74
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.73
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.7
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.7
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.7
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.7
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.7
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.7
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.68
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.65
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.64
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.63
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.63
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.63
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.63
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.62
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.6
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.6
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.58
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.58
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.57
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.56
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.56
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.56
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.56
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.55
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.52
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.51
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.51
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.5
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.46
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.42
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.42
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.41
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.39
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.39
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.38
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.38
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.38
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.37
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.35
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.35
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.32
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.32
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.29
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.26
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.25
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.24
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.24
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.24
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.22
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.21
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.21
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.16
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.06
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.06
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.98
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.97
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.94
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.94
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.93
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.9
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.86
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.86
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.84
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.8
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.8
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.8
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.78
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.77
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.76
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.75
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.72
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.71
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.69
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.69
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.67
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.65
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.62
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.6
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.6
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.59
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.58
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.57
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.57
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.56
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.54
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.51
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.47
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.45
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.42
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.4
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.36
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.35
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.3
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.29
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.26
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.25
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.21
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.19
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.18
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.18
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.16
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.09
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.06
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.0
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.99
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.93
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.87
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.84
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.84
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.81
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.78
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.73
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.71
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.7
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.64
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.6
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.52
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.51
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.47
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.41
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.4
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.36
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.29
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.13
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.94
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.94
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.91
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.8
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.61
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.25
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.22
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.14
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.09
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.86
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	95.69
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	95.67
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	95.38
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.09
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.0
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	94.93
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	94.87
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	94.85
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	94.83
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	94.81
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	94.69
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	94.52
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.52
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	94.17
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	93.91
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.54
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	93.41
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	93.33
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	93.19
3ott_A	758	Two-component system sensor histidine kinase; beta	93.13
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	92.62
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	92.17
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	91.79
3ott_A	758	Two-component system sensor histidine kinase; beta	91.66
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	91.61
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	91.1
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	90.84
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	89.91
1uuj_A	88	Platelet-activating factor acetylhydrolase IB ALP	89.64
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	89.17
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	88.82
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	88.5
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	88.08
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	87.09
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	87.02
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	86.17
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	85.63
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	83.77
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	83.57

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=7.4e-52  Score=422.78  Aligned_cols=297  Identities=29%  Similarity=0.505  Sum_probs=261.1

Q ss_pred             eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467          209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  288 (564)
Q Consensus       209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  288 (564)
                      ...+.+|..+|++++|+|++.+|++|+.|++|+|||+.++...             ...    ..|...|++++|+|+|+
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~-------------~~l----~~h~~~V~~v~~~~~~~  163 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE-------------RTL----KGHTDSVQDISFDHSGK  163 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCC-------------EEE----CCCSSCEEEEEECTTSS
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE-------------EEE----eccCCcEEEEEEcCCCC
Confidence            3467899999999999999999999999999999999876421             111    23567899999999999


Q ss_pred             EEEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcC
Q 008467          289 LLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR  367 (564)
Q Consensus       289 ~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  367 (564)
                      +|++|+.||.|++|+..+ .....+.+|..+|.+++|+|++++|++|+.|++|++||++++.+                 
T Consensus       164 ~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~-----------------  226 (410)
T 1vyh_C          164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC-----------------  226 (410)
T ss_dssp             EEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE-----------------
T ss_pred             EEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE-----------------
Confidence            999999999999999864 56678899999999999999999999999999999999987643                 


Q ss_pred             CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEE
Q 008467          368 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI  447 (564)
Q Consensus       368 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i  447 (564)
                                              +..+.+|...|.+++|+|++.+|++|+.|++|++||+.++.+...+..|...|.++
T Consensus       227 ------------------------~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~  282 (410)
T 1vyh_C          227 ------------------------VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI  282 (410)
T ss_dssp             ------------------------EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred             ------------------------EEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEE
Confidence                                    34566788999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCCC-----------CCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 008467          448 RWSPTGSGT-----------NNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSM  516 (564)
Q Consensus       448 ~~~p~~~~~-----------~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i  516 (564)
                      +|+|++...           .......+|++|+.|++|++||+++++++..+.+|..+|++++|+|+|++|++|+.||.|
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i  362 (410)
T 1vyh_C          283 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTL  362 (410)
T ss_dssp             EECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEE
T ss_pred             EEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence            999964210           000012379999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCeEEEEEecC-CCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          517 HIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       517 ~iw~~~~~~~~~~~~~~-~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      ++||+.+++++.++.++ ..|.+++|+|++.+||+|+.|+.|+||++|
T Consensus       363 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          363 RVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             EEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             EEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            99999999998888765 469999999999999999999999999986

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=5.1e-46  Score=399.32  Aligned_cols=332  Identities=23%  Similarity=0.353  Sum_probs=280.0

Q ss_pred             CceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC
Q 008467          207 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE  286 (564)
Q Consensus       207 ~~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~  286 (564)
                      ....++.+|...|++++|+|+|++||||+.|++|+|||+.++...        .   ....    ..+...|.+++|+|+
T Consensus        50 ~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~--------~---~~~~----~~~~~~v~~v~fs~d  114 (611)
T 1nr0_A           50 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI--------L---KTTI----PVFSGPVKDISWDSE  114 (611)
T ss_dssp             SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC--------E---EEEE----ECSSSCEEEEEECTT
T ss_pred             ccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcce--------e---eEee----cccCCceEEEEECCC
Confidence            345678999999999999999999999999999999998654211        0   1111    234578999999999


Q ss_pred             CCEEEEEeCC----CeEEEEECCCceeEeecCCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCcceeEEEeecccCe
Q 008467          287 GTLLATGSYD----GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT  361 (564)
Q Consensus       287 g~~l~sg~~d----g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~  361 (564)
                      |++|++++.+    +.|++|+. +.....+.+|..+|.+++|+|++. .|++|+.|++|++||..++++...+..|...+
T Consensus       115 g~~l~~~~~~~~~~~~v~~wd~-~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V  193 (611)
T 1nr0_A          115 SKRIAAVGEGRERFGHVFLFDT-GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFV  193 (611)
T ss_dssp             SCEEEEEECCSSCSEEEEETTT-CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCE
T ss_pred             CCEEEEEECCCCceeEEEEeeC-CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCce
Confidence            9999999875    48999985 445567889999999999999987 59999999999999999999888999999999


Q ss_pred             EEEEcCCC-ceEEEEeCCCeEEEEEcCCCceeeEec-------CCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCee
Q 008467          362 LDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFA-------GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY  433 (564)
Q Consensus       362 ~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~-------~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~  433 (564)
                      .++.|.++ ..+++++.|+.|++|+...+.++..+.       +|.+.|.+++|+|++++|++|+.|++|++||+.++++
T Consensus       194 ~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~  273 (611)
T 1nr0_A          194 HSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV  273 (611)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred             EEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCce
Confidence            99999765 568899999999999999888888774       8999999999999999999999999999999987765


Q ss_pred             ee-------------------------------------------ecccccccEEEEEEccCCCCCCCCCCcEEEEEEeC
Q 008467          434 VH-------------------------------------------DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF  470 (564)
Q Consensus       434 ~~-------------------------------------------~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~  470 (564)
                      +.                                           .+.+|...|++++|+|++.         +|++++.
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~---------~l~s~s~  344 (611)
T 1nr0_A          274 EKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGK---------TLFSADA  344 (611)
T ss_dssp             EEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS---------EEEEEET
T ss_pred             eeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC---------EEEEEeC
Confidence            43                                           3347888999999999875         7899999


Q ss_pred             CCeEEEEeCCCCeEEEEE-e------------------------------------------------------------
Q 008467          471 DSTVKLWDVELGKLLYSL-N------------------------------------------------------------  489 (564)
Q Consensus       471 dg~i~iwd~~~~~~~~~~-~------------------------------------------------------------  489 (564)
                      |++|++||+.++++...+ .                                                            
T Consensus       345 D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~  424 (611)
T 1nr0_A          345 EGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD  424 (611)
T ss_dssp             TSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS
T ss_pred             CCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCc
Confidence            999999998766543221 0                                                            


Q ss_pred             ---------------------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE--EEEEecCCCEEEEEEccCCC
Q 008467          490 ---------------------GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI--VKTYTGNGGIFEVCWNKEGD  546 (564)
Q Consensus       490 ---------------------~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~--~~~~~~~~~i~~~~w~~~g~  546 (564)
                                           .|...+.+++|+|||++||+|+.|++|++|++.++.+  +........|.+++|+|+|+
T Consensus       425 ~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~  504 (611)
T 1nr0_A          425 IAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGA  504 (611)
T ss_dssp             CEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSS
T ss_pred             EEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCC
Confidence                                 1234578899999999999999999999999988754  34434456799999999999


Q ss_pred             EEEEEEcCCcEEEEEee
Q 008467          547 KIAACFANHTVCVLDFR  563 (564)
Q Consensus       547 ~la~~~~~~~v~v~~~~  563 (564)
                      +||+++.|++|.+||+.
T Consensus       505 ~las~s~d~~v~~w~~~  521 (611)
T 1nr0_A          505 FLVATDQSRKVIPYSVA  521 (611)
T ss_dssp             EEEEEETTSCEEEEEGG
T ss_pred             EEEEEcCCCCEEEEEcC
Confidence            99999999999999974

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.1e-46  Score=367.22  Aligned_cols=289  Identities=22%  Similarity=0.395  Sum_probs=255.3

Q ss_pred             eEccCCccceEEEEECCC----CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC
Q 008467          210 TILEGHTSEVCACAWSPA----GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG  285 (564)
Q Consensus       210 ~~l~~h~~~V~~~~~sp~----~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~  285 (564)
                      ..+.+|.+.|.+++|+|+    +.+|+||+.|++|+||++.++..           .....    ...|...|.+++|++
T Consensus        26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-----------~~~~~----l~gh~~~v~~~~~~~   90 (321)
T 3ow8_A           26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-----------DLQWS----LEGHQLGVVSVDISH   90 (321)
T ss_dssp             EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-----------EEEEE----ECCCSSCEEEEEECS
T ss_pred             eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-----------eeeee----eccCCCCEEEEEECC
Confidence            456799999999999985    56999999999999999865321           11111    234567899999999


Q ss_pred             CCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEE
Q 008467          286 EGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV  364 (564)
Q Consensus       286 ~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~  364 (564)
                      ++.++++|+.||.|++||.. +.....+..|...+.+++|+|++++|++|+.|++|++||+.++...             
T Consensus        91 ~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~-------------  157 (321)
T 3ow8_A           91 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKE-------------  157 (321)
T ss_dssp             SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEE-------------
T ss_pred             CCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCcee-------------
Confidence            99999999999999999975 5566778889999999999999999999999999999999875432             


Q ss_pred             EcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccE
Q 008467          365 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEI  444 (564)
Q Consensus       365 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i  444 (564)
                                                  ..+..|...|.+++|+|++++||+|+.||.|++||+.+++.+..+.+|..+|
T Consensus       158 ----------------------------~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v  209 (321)
T 3ow8_A          158 ----------------------------YSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPI  209 (321)
T ss_dssp             ----------------------------EEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCC
T ss_pred             ----------------------------EEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCce
Confidence                                        2345577789999999999999999999999999999999999999999999


Q ss_pred             EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 008467          445 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG  524 (564)
Q Consensus       445 ~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~  524 (564)
                      .+++|+|++.         +|++|+.|++|++||+++++.+..+.+|...|.+++|+|+|++|++|+.|++|+|||+.++
T Consensus       210 ~~l~~spd~~---------~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~  280 (321)
T 3ow8_A          210 RSLTFSPDSQ---------LLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR  280 (321)
T ss_dssp             CEEEECTTSC---------EEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             eEEEEcCCCC---------EEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Confidence            9999999875         7999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEecC-CCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          525 KIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       525 ~~~~~~~~~-~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      +++.++.++ ..|.+++|+|+|++|++++.|+.|.|||+-
T Consensus       281 ~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          281 TCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             EEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            999998764 579999999999999999999999999963

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.9e-46  Score=380.72  Aligned_cols=337  Identities=27%  Similarity=0.517  Sum_probs=292.7

Q ss_pred             cCCccceEEEEECCCCC-EEEEEECCCcEEEEeC----CCCCCCCCCCCCCceEEEEEeec-c--ccccCCCCeEEEEEC
Q 008467          213 EGHTSEVCACAWSPAGS-LLASGSGDSTARIWTI----ADGTSNGGAQNGPLNVLVLKHVK-G--RTNEKSKDVTTLDWN  284 (564)
Q Consensus       213 ~~h~~~V~~~~~sp~~~-~lasgs~D~~i~iW~~----~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~V~~l~~s  284 (564)
                      ..|...|.+++|+|+++ +||+|+.|+.|++|++    .++......    .....+.+.. .  ....+...|++++|+
T Consensus        42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  117 (425)
T 1r5m_A           42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKL----TIIAELRHPFALSASSGKTTNQVTCLAWS  117 (425)
T ss_dssp             EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEE----EEEEEEECCCCCC------CBCEEEEEEC
T ss_pred             eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccc----cccccccccccccccccCCCCceEEEEEc
Confidence            34568999999999999 9999999999999999    655411000    0001111100 0  011245689999999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccC----
Q 008467          285 GEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP----  360 (564)
Q Consensus       285 ~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~----  360 (564)
                      |++++|++|+.||.|++|+..+.....+..|..+|.+++|+|++++|++++.|+.|++||+.+++....+..+...    
T Consensus       118 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  197 (425)
T 1r5m_A          118 HDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSI  197 (425)
T ss_dssp             TTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-------
T ss_pred             CCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccce
Confidence            9999999999999999999888888899999999999999999999999999999999999999988888777665    


Q ss_pred             -----------eEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 008467          361 -----------TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK  429 (564)
Q Consensus       361 -----------~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~  429 (564)
                                 +..+.|.++..+++++.++.|++|++....++..+.+|...|.+++|+|++++|++++.|+.|++||+.
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~  277 (425)
T 1r5m_A          198 NAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGG  277 (425)
T ss_dssp             --------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSS
T ss_pred             eeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence                       778888888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEE
Q 008467          430 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS  509 (564)
Q Consensus       430 ~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~las  509 (564)
                      +++.+..+..|...|.+++|+|++          ++++++.||.|++||+++++.+..+..|..+|.+++|+|+|++|++
T Consensus       278 ~~~~~~~~~~~~~~i~~~~~~~~~----------~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  347 (425)
T 1r5m_A          278 NGNSQNCFYGHSQSIVSASWVGDD----------KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAV  347 (425)
T ss_dssp             SBSCSEEECCCSSCEEEEEEETTT----------EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEE
T ss_pred             CCccceEecCCCccEEEEEECCCC----------EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEE
Confidence            999888999999999999999975          5889999999999999999999999999999999999999999999


Q ss_pred             EeCCCcEEEEeCCCCe--------------------EEEEEecC--C-CEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          510 GSLDKSMHIWSLKEGK--------------------IVKTYTGN--G-GIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       510 gs~dg~i~iw~~~~~~--------------------~~~~~~~~--~-~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      |+.||.|++|++.+++                    ++..+..+  + .|.+++|+|+|++|++++.||.|.|||++
T Consensus       348 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          348 AFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             EETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             EECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence            9999999999999888                    88888776  5 89999999999999999999999999985

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.5e-45  Score=364.93  Aligned_cols=286  Identities=23%  Similarity=0.388  Sum_probs=252.7

Q ss_pred             ceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC
Q 008467          208 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG  287 (564)
Q Consensus       208 ~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g  287 (564)
                      ....|.+|...|.+++|+|++++|++|+.||+|+|||+.++...             ...    ..+...|.+++|+|+|
T Consensus        47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~-------------~~~----~~~~~~v~~~~~s~~~  109 (340)
T 1got_B           47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKV-------------HAI----PLRSSWVMTCAYAPSG  109 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEE-------------EEE----ECSSSCEEEEEECTTS
T ss_pred             hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcc-------------eEe----ecCCccEEEEEECCCC
Confidence            45678999999999999999999999999999999998765321             111    1245679999999999


Q ss_pred             CEEEEEeCCCeEEEEECCC-----ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeE
Q 008467          288 TLLATGSYDGQARIWSTNG-----DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL  362 (564)
Q Consensus       288 ~~l~sg~~dg~i~vw~~~~-----~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~  362 (564)
                      ++|++|+.|+.+++|+...     .....+.+|.+.|.++.|++++ .+++++.|++|++||+.++..            
T Consensus       110 ~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~------------  176 (340)
T 1got_B          110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQ------------  176 (340)
T ss_dssp             SEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEE------------
T ss_pred             CEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcE------------
Confidence            9999999999999999753     2445678999999999999876 489999999999999987542            


Q ss_pred             EEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccc
Q 008467          363 DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK  442 (564)
Q Consensus       363 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~  442 (564)
                                                   +..+.+|.+.|.+++|+|++++|++|+.|++|++||++++.++..+.+|..
T Consensus       177 -----------------------------~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~  227 (340)
T 1got_B          177 -----------------------------TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES  227 (340)
T ss_dssp             -----------------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS
T ss_pred             -----------------------------EEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcC
Confidence                                         345678999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeC--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008467          443 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG--HREPVYSLAFSPTGEYLASGSLDKSMHIWS  520 (564)
Q Consensus       443 ~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--h~~~i~~~~~spdg~~lasgs~dg~i~iw~  520 (564)
                      .|.+++|+|++.         +|++|+.||+|++||+++++.+..+..  +..+|++++|+|+|++|++|+.||.|++||
T Consensus       228 ~v~~v~~~p~~~---------~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd  298 (340)
T 1got_B          228 DINAICFFPNGN---------AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD  298 (340)
T ss_dssp             CEEEEEECTTSS---------EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             CEEEEEEcCCCC---------EEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEE
Confidence            999999999875         799999999999999999988877653  335799999999999999999999999999


Q ss_pred             CCCCeEEEEEecC-CCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467          521 LKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLD  561 (564)
Q Consensus       521 ~~~~~~~~~~~~~-~~i~~~~w~~~g~~la~~~~~~~v~v~~  561 (564)
                      +.+++.+..+.++ ..|.+++|+|+|++||+|+.|+.|+|||
T Consensus       299 ~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          299 ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             cccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            9999998888765 5699999999999999999999999997

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=3.9e-45  Score=392.47  Aligned_cols=335  Identities=19%  Similarity=0.323  Sum_probs=272.7

Q ss_pred             eeEccCCccceEEEEECCCCC-EEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC
Q 008467          209 VTILEGHTSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG  287 (564)
Q Consensus       209 ~~~l~~h~~~V~~~~~sp~~~-~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g  287 (564)
                      ...+.+|...|++++|+|++. +|++|+.|++|++|+..+++.             ...    ...|...|.+++|+|+|
T Consensus       140 ~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~-------------~~~----l~~H~~~V~~v~fspdg  202 (611)
T 1nr0_A          140 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF-------------KST----FGEHTKFVHSVRYNPDG  202 (611)
T ss_dssp             CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE-------------EEE----ECCCSSCEEEEEECTTS
T ss_pred             cceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeE-------------eee----eccccCceEEEEECCCC
Confidence            346789999999999999986 699999999999999754321             111    23456789999999999


Q ss_pred             CEEEEEeCCCeEEEEECC-CceeEeec-------CCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeec--
Q 008467          288 TLLATGSYDGQARIWSTN-GDLKCTLS-------KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH--  357 (564)
Q Consensus       288 ~~l~sg~~dg~i~vw~~~-~~~~~~~~-------~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~--  357 (564)
                      ++|++|+.||.|++|+.. +.....+.       +|.++|++++|+|++++|++++.|++|++||+.++++...+..+  
T Consensus       203 ~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~  282 (611)
T 1nr0_A          203 SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR  282 (611)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             CEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCC
Confidence            999999999999999964 55555553       79999999999999999999999999999999999888777543  


Q ss_pred             -ccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeee
Q 008467          358 -SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD  436 (564)
Q Consensus       358 -~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~  436 (564)
                       ......+.| ....+++++.|+.+++|+...+.+...+.+|...|++++|+|+|++|++++.|++|++||+.++.....
T Consensus       283 ~~~~~~~~~~-~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~  361 (611)
T 1nr0_A          283 IEDQQLGIIW-TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRV  361 (611)
T ss_dssp             GGGCEEEEEE-CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEC
T ss_pred             ccceeEEEEE-cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeee
Confidence             234556667 556788999999999999998888889999999999999999999999999999999999987765544


Q ss_pred             c-ccccccEEEEEEccCCC-------------------------------------------------------------
Q 008467          437 L-REHSKEIYTIRWSPTGS-------------------------------------------------------------  454 (564)
Q Consensus       437 ~-~~~~~~i~~i~~~p~~~-------------------------------------------------------------  454 (564)
                      + ..|...|.+++|++++.                                                             
T Consensus       362 ~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~  441 (611)
T 1nr0_A          362 FPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK  441 (611)
T ss_dssp             SSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE
T ss_pred             cccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCc
Confidence            3 23444444444332110                                                             


Q ss_pred             ------------CCCCCCCcEEEEEEeCCCeEEEEeCCCCeE--EEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008467          455 ------------GTNNPNQQLILASASFDSTVKLWDVELGKL--LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS  520 (564)
Q Consensus       455 ------------~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~  520 (564)
                                  ...+|+. .+|++|+.|++|++||+..+..  +.. .+|...|++++|||||++||+++.|++|++|+
T Consensus       442 ~~~~~~~~~v~~va~spdg-~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~  519 (611)
T 1nr0_A          442 LTEVPISYNSSCVALSNDK-QFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYS  519 (611)
T ss_dssp             EEEEECSSCEEEEEECTTS-CEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             eeeeecCCCceEEEEeCCC-CEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEE
Confidence                        0011222 2789999999999999987654  234 67999999999999999999999999999999


Q ss_pred             CCC-CeEEEE--Ee-cCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          521 LKE-GKIVKT--YT-GNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       521 ~~~-~~~~~~--~~-~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      +.+ +++...  +. +...|.+++|+|||++||+|+.|++|+|||+.
T Consensus       520 ~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~  566 (611)
T 1nr0_A          520 VANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMN  566 (611)
T ss_dssp             GGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             cCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECC
Confidence            987 666543  23 45679999999999999999999999999974

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=7.8e-45  Score=355.46  Aligned_cols=290  Identities=23%  Similarity=0.352  Sum_probs=249.7

Q ss_pred             eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467          209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  288 (564)
Q Consensus       209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  288 (564)
                      ..++.+|...|.+++|+|++++||+|+.||+|+|||+.++..             +...    ..+...|.+++|+|+++
T Consensus         6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~-------------~~~~----~~~~~~v~~~~~~~~~~   68 (304)
T 2ynn_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVE-------------VRSI----QVTETPVRAGKFIARKN   68 (304)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-------------EEEE----ECCSSCEEEEEEEGGGT
T ss_pred             EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCce-------------eEEe----eccCCcEEEEEEeCCCC
Confidence            467889999999999999999999999999999999876531             1111    23456799999999999


Q ss_pred             EEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcC
Q 008467          289 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR  367 (564)
Q Consensus       289 ~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  367 (564)
                      +|++|+.|+.|++|+.. +.....+.+|.+.|.+++|+|++.+|++|+.|++|++||++++..                 
T Consensus        69 ~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~-----------------  131 (304)
T 2ynn_A           69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA-----------------  131 (304)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTE-----------------
T ss_pred             EEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcc-----------------
Confidence            99999999999999975 567778999999999999999999999999999999999876421                 


Q ss_pred             CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeeeeecc-cccccEE
Q 008467          368 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDLR-EHSKEIY  445 (564)
Q Consensus       368 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~-~~~~las~s~dg~i~iwd~~~~~~~~~~~-~~~~~i~  445 (564)
                                             ....+.+|...|.+++|+| ++.+|++|+.|++|++||+.+......+. .|...+.
T Consensus       132 -----------------------~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~  188 (304)
T 2ynn_A          132 -----------------------LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN  188 (304)
T ss_dssp             -----------------------EEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEE
T ss_pred             -----------------------hhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEE
Confidence                                   2245678999999999999 67899999999999999998776655554 4567899


Q ss_pred             EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 008467          446 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK  525 (564)
Q Consensus       446 ~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~  525 (564)
                      .+.|+|....       .+|++|+.|++|++||+++++++.++.+|...|.+++|+|++++|++|+.||+|++||+.+++
T Consensus       189 ~~~~~~~~~~-------~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~  261 (304)
T 2ynn_A          189 YVDYYPLPDK-------PYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK  261 (304)
T ss_dssp             EEEECCSTTC-------CEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC
T ss_pred             EEEEEEcCCC-------CEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence            9999885321       279999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEecC-CCEEEEEEccCCC--EEEEEEcCCcEEEEEee
Q 008467          526 IVKTYTGN-GGIFEVCWNKEGD--KIAACFANHTVCVLDFR  563 (564)
Q Consensus       526 ~~~~~~~~-~~i~~~~w~~~g~--~la~~~~~~~v~v~~~~  563 (564)
                      +++++..+ ..+.+++|+|+|.  ++|+|+.|| +.+|++.
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~  301 (304)
T 2ynn_A          262 VEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLG  301 (304)
T ss_dssp             EEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC
T ss_pred             eeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEec
Confidence            99998764 5789999999985  578887664 6677653

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.3e-44  Score=384.26  Aligned_cols=324  Identities=31%  Similarity=0.551  Sum_probs=290.0

Q ss_pred             CCceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC
Q 008467          206 NSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG  285 (564)
Q Consensus       206 ~~~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~  285 (564)
                      ...+..+.+|...|.+++|+|++++|++++.|+.+++|+....              .....    ..+...|++++|+|
T Consensus       252 ~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~--------------~~~~~----~~h~~~v~~~~~~~  313 (577)
T 2ymu_A          252 GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ--------------LLQTL----TGHSSSVWGVAFSP  313 (577)
T ss_dssp             SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC--------------EEEEE----CCCSSCEEEEEECT
T ss_pred             CCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc--------------EEEEE----ecCCCCeEEEEECC
Confidence            3445678899999999999999999999999999999996421              11112    23567899999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEE
Q 008467          286 EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD  365 (564)
Q Consensus       286 ~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~  365 (564)
                      ++.+|++++.||.|++|+..+.....+.+|..+|.+++|+|++++|++++.|+++++||. +++....+..|...+.++.
T Consensus       314 ~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~  392 (577)
T 2ymu_A          314 DGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVA  392 (577)
T ss_dssp             TSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEE
Confidence            999999999999999999998888889999999999999999999999999999999995 5677788888999999999


Q ss_pred             cCCC-ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccE
Q 008467          366 WRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEI  444 (564)
Q Consensus       366 ~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i  444 (564)
                      |.++ ..+++++.|+.|++|+. +.+.+..+.+|...|.+++|+|++++|++++.|++|++||. +++.+..+..|...|
T Consensus       393 ~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v  470 (577)
T 2ymu_A          393 FSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV  470 (577)
T ss_dssp             ECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCE
T ss_pred             ECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCE
Confidence            8755 56788999999999996 45678889999999999999999999999999999999996 456778889999999


Q ss_pred             EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 008467          445 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG  524 (564)
Q Consensus       445 ~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~  524 (564)
                      .+++|+|++.         +|++++.|++|++||. +++++..+.+|..+|++++|+|||++||+|+.||.|++||. ++
T Consensus       471 ~~~~~spd~~---------~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~  539 (577)
T 2ymu_A          471 RGVAFSPDGQ---------TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NG  539 (577)
T ss_dssp             EEEEECTTSC---------EEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TS
T ss_pred             EEEEEcCCCC---------EEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CC
Confidence            9999999875         7999999999999995 58889999999999999999999999999999999999996 67


Q ss_pred             eEEEEEecC-CCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467          525 KIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLD  561 (564)
Q Consensus       525 ~~~~~~~~~-~~i~~~~w~~~g~~la~~~~~~~v~v~~  561 (564)
                      +++.++.++ +.|.+++|+|||++|++++.|++|+|||
T Consensus       540 ~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          540 QLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            888888765 5699999999999999999999999997

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.1e-44  Score=362.06  Aligned_cols=287  Identities=24%  Similarity=0.419  Sum_probs=256.1

Q ss_pred             ceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC
Q 008467          208 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG  287 (564)
Q Consensus       208 ~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g  287 (564)
                      ....|.+|...|++++|+|++++||||+.|++|+|||..++...             ...    ..+...|.+++|+|+|
T Consensus        56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~-------------~~~----~~~~~~v~~~~~sp~g  118 (354)
T 2pbi_B           56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKE-------------HAV----TMPCTWVMACAYAPSG  118 (354)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE-------------EEE----ECSSSCCCEEEECTTS
T ss_pred             EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcc-------------eEE----ecCCCCEEEEEECCCC
Confidence            45678999999999999999999999999999999998754311             111    1234679999999999


Q ss_pred             CEEEEEeCCCeEEEEECCC-------ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccC
Q 008467          288 TLLATGSYDGQARIWSTNG-------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP  360 (564)
Q Consensus       288 ~~l~sg~~dg~i~vw~~~~-------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~  360 (564)
                      .+|++|+.|+.+++|+...       .....+..|.+.|.++.|+|++.+|++++.|++|++||+.+++.+..+..|...
T Consensus       119 ~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~  198 (354)
T 2pbi_B          119 CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGAD  198 (354)
T ss_dssp             SEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             CEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCC
Confidence            9999999999999998642       234567789999999999999999999999999999999999999999999999


Q ss_pred             eEEEEcCC---CceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeec
Q 008467          361 TLDVDWRN---NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL  437 (564)
Q Consensus       361 ~~~~~~~~---~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~  437 (564)
                      +..+.+..   ...+++++.|+.|++|++.+++++..+.+|...|++++|+|++.+|++|+.|++|++||++..+.+..+
T Consensus       199 v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~  278 (354)
T 2pbi_B          199 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIY  278 (354)
T ss_dssp             EEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             eEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence            98888754   368999999999999999999999999999999999999999999999999999999999988877665


Q ss_pred             ccc--cccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCc
Q 008467          438 REH--SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKS  515 (564)
Q Consensus       438 ~~~--~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~  515 (564)
                      ..+  ...+.+++|+|++.         +|++|+.|++|++||+.+++.+..+.+|..+|++++|+|||++||+|+.||+
T Consensus       279 ~~~~~~~~~~~~~~s~~g~---------~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~  349 (354)
T 2pbi_B          279 SKESIIFGASSVDFSLSGR---------LLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHT  349 (354)
T ss_dssp             CCTTCCSCEEEEEECTTSS---------EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSE
T ss_pred             cCCCcccceeEEEEeCCCC---------EEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCC
Confidence            533  34789999999875         7999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEe
Q 008467          516 MHIWS  520 (564)
Q Consensus       516 i~iw~  520 (564)
                      |+||+
T Consensus       350 v~vW~  354 (354)
T 2pbi_B          350 LRVWA  354 (354)
T ss_dssp             EEEEC
T ss_pred             EEecC
Confidence            99996

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.5e-43  Score=348.85  Aligned_cols=289  Identities=27%  Similarity=0.469  Sum_probs=249.3

Q ss_pred             eEccCCccceEEEEECCCC-CEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467          210 TILEGHTSEVCACAWSPAG-SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  288 (564)
Q Consensus       210 ~~l~~h~~~V~~~~~sp~~-~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  288 (564)
                      ..|.+|.+.|++++|+|++ ++|+||+.|++|++|++......        ....+...    ..|...|++++|+|+|+
T Consensus        11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~--------~~~~~~~~----~~h~~~v~~~~~s~dg~   78 (319)
T 3frx_A           11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK--------FGVPVRSF----KGHSHIVQDCTLTADGA   78 (319)
T ss_dssp             EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE--------EEEEEEEE----ECCSSCEEEEEECTTSS
T ss_pred             EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc--------ccccceEE----eCCcccEEEEEECCCCC
Confidence            4688999999999999975 89999999999999998532110        00111222    34567899999999999


Q ss_pred             EEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcC
Q 008467          289 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR  367 (564)
Q Consensus       289 ~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  367 (564)
                      +|++|+.||.|++||.. +.....+.+|..+|.+++|+|++.+|++|+.|++|++||++..                   
T Consensus        79 ~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-------------------  139 (319)
T 3frx_A           79 YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-------------------  139 (319)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC-------------------
T ss_pred             EEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-------------------
Confidence            99999999999999975 5667788999999999999999999999999999999998532                   


Q ss_pred             CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC------CCEEEEEeCCCcEEEEeCCCCeeeeeccccc
Q 008467          368 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT------GSLLASCSDDVTAKIWNMKQDKYVHDLREHS  441 (564)
Q Consensus       368 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~------~~~las~s~dg~i~iwd~~~~~~~~~~~~~~  441 (564)
                                             .+..+.+|...|.+++|+|.      +.+|++++.|++|++||+++.+....+.+|.
T Consensus       140 -----------------------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~  196 (319)
T 3frx_A          140 -----------------------CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHN  196 (319)
T ss_dssp             -----------------------EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCC
T ss_pred             -----------------------eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCC
Confidence                                   22345678889999999985      4589999999999999999999999999999


Q ss_pred             ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 008467          442 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL  521 (564)
Q Consensus       442 ~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~  521 (564)
                      ..|.+++|+|++.         +|++|+.||+|+|||+.+++++..+..+ .+|.+++|+|+|.+|++++.++ +++|++
T Consensus       197 ~~v~~~~~sp~g~---------~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~~~-i~v~~~  265 (319)
T 3frx_A          197 SNINTLTASPDGT---------LIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATG-IKVFSL  265 (319)
T ss_dssp             SCEEEEEECTTSS---------EEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEECSSSSEEEEEETTE-EEEEEE
T ss_pred             CcEEEEEEcCCCC---------EEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcCCCCEEEEEcCCC-cEEEEe
Confidence            9999999999875         7999999999999999999999988855 6899999999999999988665 999999


Q ss_pred             CCCeEEEEEec---------CCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          522 KEGKIVKTYTG---------NGGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       522 ~~~~~~~~~~~---------~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      ..+.++..+..         ...+.+++|+|||++|++|+.|+.|+|||+.
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~  316 (319)
T 3frx_A          266 DPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM  316 (319)
T ss_dssp             TTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred             CcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence            98887777643         3458899999999999999999999999985

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.3e-44  Score=359.38  Aligned_cols=293  Identities=20%  Similarity=0.303  Sum_probs=234.5

Q ss_pred             CCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEE
Q 008467          214 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG  293 (564)
Q Consensus       214 ~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg  293 (564)
                      .|...|.+++|+|||++|++++ |+++|+||........ ....+...     .......+...|.+++|+|++ .|++|
T Consensus        28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~v~~~~~s~d~-~l~~~   99 (344)
T 4gqb_B           28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKD-PCAAPNEG-----FCSAGVQTEAGVADLTWVGER-GILVA   99 (344)
T ss_dssp             SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESS-GGGTTCGG-----GCSEEEEESSCEEEEEEETTT-EEEEE
T ss_pred             cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeecc-ccccCCcc-----eeeeeeccCCCEEEEEEeCCC-eEEEE
Confidence            4667899999999999999887 8888999732100000 00000000     000001124569999999985 67899


Q ss_pred             eCCCeEEEEECCC-ce----eEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCC
Q 008467          294 SYDGQARIWSTNG-DL----KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN  368 (564)
Q Consensus       294 ~~dg~i~vw~~~~-~~----~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  368 (564)
                      +.||.|+|||... +.    ...+.+|.+.|++++|+|+|++|++|+.|++|++||+.+++                   
T Consensus       100 s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~-------------------  160 (344)
T 4gqb_B          100 SDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQV-------------------  160 (344)
T ss_dssp             ETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-------------------
T ss_pred             ECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc-------------------
Confidence            9999999999753 22    22456899999999999999999999999999999998754                   


Q ss_pred             CceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeeeeecc--cccccEE
Q 008467          369 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQDKYVHDLR--EHSKEIY  445 (564)
Q Consensus       369 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~-~las~s~dg~i~iwd~~~~~~~~~~~--~~~~~i~  445 (564)
                                            ++..+.+|.+.|++++|+|++. +|++|+.|++|++||++++++...+.  .|...+.
T Consensus       161 ----------------------~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~  218 (344)
T 4gqb_B          161 ----------------------VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPT  218 (344)
T ss_dssp             ----------------------EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEE
T ss_pred             ----------------------EEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccce
Confidence                                  3456778999999999999984 78999999999999999998887764  4556789


Q ss_pred             EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCC
Q 008467          446 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG-EYLASGSLDKSMHIWSLKEG  524 (564)
Q Consensus       446 ~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg-~~lasgs~dg~i~iw~~~~~  524 (564)
                      +++|+|.+.        .+|++|+.||+|+|||+++++++.++.+|..+|++++|+|+| ++||+|+.|++|+|||+.++
T Consensus       219 ~~~~~p~~~--------~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~  290 (344)
T 4gqb_B          219 SLAWHPQQS--------EVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS  290 (344)
T ss_dssp             EEEECSSCT--------TEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC
T ss_pred             eeeecCCCC--------cceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Confidence            999998653        278999999999999999999999999999999999999998 68999999999999999999


Q ss_pred             eEEEEEecCCCEEEEEEccCCC-EEEEEEcCCcEEEEEee
Q 008467          525 KIVKTYTGNGGIFEVCWNKEGD-KIAACFANHTVCVLDFR  563 (564)
Q Consensus       525 ~~~~~~~~~~~i~~~~w~~~g~-~la~~~~~~~v~v~~~~  563 (564)
                      +++....+.+.|++++|+|+|+ .|++|+.|++|.+|++.
T Consensus       291 ~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~  330 (344)
T 4gqb_B          291 ELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVP  330 (344)
T ss_dssp             EEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred             cEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECC
Confidence            8876544456799999999986 67789999999999975

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=8.9e-44  Score=354.42  Aligned_cols=294  Identities=29%  Similarity=0.527  Sum_probs=244.7

Q ss_pred             eeEccCCcc-ceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC
Q 008467          209 VTILEGHTS-EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG  287 (564)
Q Consensus       209 ~~~l~~h~~-~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g  287 (564)
                      +..+.+|.. .|.+++|+|+|++||+|+.|++|+||++.++..            .....  ....|...|++++|+|+|
T Consensus         8 ~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~------------~~~~~--~~~~h~~~v~~~~~sp~g   73 (345)
T 3fm0_A            8 LGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW------------ICKSV--LSEGHQRTVRKVAWSPCG   73 (345)
T ss_dssp             EEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEE------------EEEEE--ECSSCSSCEEEEEECTTS
T ss_pred             eeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc------------eeeee--eccccCCcEEEEEECCCC
Confidence            456789988 999999999999999999999999999865421            00100  112456789999999999


Q ss_pred             CEEEEEeCCCeEEEEECCCc---eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEE
Q 008467          288 TLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV  364 (564)
Q Consensus       288 ~~l~sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~  364 (564)
                      ++|++|+.|+.+++|+....   ....+.+|..+|.+++|+|++++|++|+.|++|++||+.++...             
T Consensus        74 ~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~-------------  140 (345)
T 3fm0_A           74 NYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEY-------------  140 (345)
T ss_dssp             SEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCE-------------
T ss_pred             CEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCe-------------
Confidence            99999999999999997643   45678899999999999999999999999999999998764311             


Q ss_pred             EcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCe--eeeecccccc
Q 008467          365 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK--YVHDLREHSK  442 (564)
Q Consensus       365 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~--~~~~~~~~~~  442 (564)
                                               ..+..+.+|...|.+++|+|++++|++|+.|++|++||..++.  +...+.+|..
T Consensus       141 -------------------------~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~  195 (345)
T 3fm0_A          141 -------------------------ECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHES  195 (345)
T ss_dssp             -------------------------EEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSS
T ss_pred             -------------------------EEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCC
Confidence                                     1234567899999999999999999999999999999998775  4567889999


Q ss_pred             cEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC---------------CeEEEEEeC-CCCCEEEEEEcCCCCE
Q 008467          443 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL---------------GKLLYSLNG-HREPVYSLAFSPTGEY  506 (564)
Q Consensus       443 ~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~---------------~~~~~~~~~-h~~~i~~~~~spdg~~  506 (564)
                      .|++++|+|++.         +|++|+.|++|+|||...               .+++..+.+ |...|++++|+|++.+
T Consensus       196 ~v~~l~~sp~g~---------~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~  266 (345)
T 3fm0_A          196 TVWSLAFDPSGQ---------RLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGA  266 (345)
T ss_dssp             CEEEEEECTTSS---------EEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCC
T ss_pred             ceEEEEECCCCC---------EEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCE
Confidence            999999999875         799999999999999632               134556655 8889999999999999


Q ss_pred             EEEEeCCCcEEEEeCCCCe--------EEEE-Ee-cCCCEEEEEEccCC-CEEEEEEcCCcEEEEEee
Q 008467          507 LASGSLDKSMHIWSLKEGK--------IVKT-YT-GNGGIFEVCWNKEG-DKIAACFANHTVCVLDFR  563 (564)
Q Consensus       507 lasgs~dg~i~iw~~~~~~--------~~~~-~~-~~~~i~~~~w~~~g-~~la~~~~~~~v~v~~~~  563 (564)
                      ||+++.|+.|++|+...+.        +... .. +...|.+++|+|++ .+||+|+.||+|+||+++
T Consensus       267 l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~  334 (345)
T 3fm0_A          267 LATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQ  334 (345)
T ss_dssp             EEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEEC
T ss_pred             EEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEec
Confidence            9999999999999987542        1111 12 24579999999998 599999999999999985

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.6e-44  Score=359.82  Aligned_cols=288  Identities=19%  Similarity=0.312  Sum_probs=239.5

Q ss_pred             cCCccceEEEEECCCCCEEEEEEC------CCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC
Q 008467          213 EGHTSEVCACAWSPAGSLLASGSG------DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE  286 (564)
Q Consensus       213 ~~h~~~V~~~~~sp~~~~lasgs~------D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~  286 (564)
                      .+|...|++++|||||++||+||.      |+.+++|+..++......             ......+...|++++|+|+
T Consensus        39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~-------------~~~~~~~~~~V~~~~~s~d  105 (357)
T 4g56_B           39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESL-------------CTAGVQTEAGVTDVAWVSE  105 (357)
T ss_dssp             -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGG-------------CSEEEECSSCEEEEEEETT
T ss_pred             ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeE-------------ecccCCCCCCEEEEEEcCC
Confidence            469999999999999999999998      778999987665422111             0111234567999999999


Q ss_pred             CCEEEEEeCCCeEEEEECCCc-e----eEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCe
Q 008467          287 GTLLATGSYDGQARIWSTNGD-L----KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT  361 (564)
Q Consensus       287 g~~l~sg~~dg~i~vw~~~~~-~----~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~  361 (564)
                      +.+ ++++.||.|+|||.... .    .....+|.++|++++|+|++++|++|+.|++|++||+++++.           
T Consensus       106 ~~~-l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~-----------  173 (357)
T 4g56_B          106 KGI-LVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAV-----------  173 (357)
T ss_dssp             TEE-EEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEE-----------
T ss_pred             CCE-EEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE-----------
Confidence            865 56788999999997532 1    234458999999999999999999999999999999887543           


Q ss_pred             EEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeeeeec--c
Q 008467          362 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQDKYVHDL--R  438 (564)
Q Consensus       362 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~-~las~s~dg~i~iwd~~~~~~~~~~--~  438 (564)
                                                    +..+.+|...|++++|+|++. ++++++.|++|++||+++++++..+  .
T Consensus       174 ------------------------------~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~  223 (357)
T 4g56_B          174 ------------------------------LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFC  223 (357)
T ss_dssp             ------------------------------EEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCT
T ss_pred             ------------------------------EEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeec
Confidence                                          345678999999999999885 7899999999999999988876544  3


Q ss_pred             cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCC-CEEEEEeCCCcEE
Q 008467          439 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG-EYLASGSLDKSMH  517 (564)
Q Consensus       439 ~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg-~~lasgs~dg~i~  517 (564)
                      .|...+.+++|+|++.        .+|++|+.|+.|++||+++++++..+.+|..+|++++|+|++ ++||+|+.||+|+
T Consensus       224 ~~~~~v~~v~~sp~~~--------~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~  295 (357)
T 4g56_B          224 ASDTIPTSVTWHPEKD--------DTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVA  295 (357)
T ss_dssp             TCCSCEEEEEECTTST--------TEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEE
T ss_pred             cccccccchhhhhccc--------ceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEE
Confidence            5677899999999753        278999999999999999999999999999999999999997 6899999999999


Q ss_pred             EEeCCCCeEEEEEecCCCEEEEEEcc-CCCEEEEEEcCCcEEEEEee
Q 008467          518 IWSLKEGKIVKTYTGNGGIFEVCWNK-EGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       518 iw~~~~~~~~~~~~~~~~i~~~~w~~-~g~~la~~~~~~~v~v~~~~  563 (564)
                      |||+++++++..+.+...|++++|+| ++++||+|+.|++|+|||+.
T Consensus       296 iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~  342 (357)
T 4g56_B          296 VLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLP  342 (357)
T ss_dssp             EECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred             EEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECC
Confidence            99999999988877677899999998 89999999999999999984

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=7.8e-45  Score=367.07  Aligned_cols=291  Identities=25%  Similarity=0.476  Sum_probs=253.7

Q ss_pred             eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467          209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  288 (564)
Q Consensus       209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  288 (564)
                      ..+|.+|.+.|++++|+|++++||||+.|++|+|||+.++..             ....    ..+...|.+++|+|+|+
T Consensus        59 ~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~-------------~~~~----~~h~~~v~~~~~s~~g~  121 (380)
T 3iz6_a           59 CRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK-------------THAI----KLHCPWVMECAFAPNGQ  121 (380)
T ss_dssp             EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE-------------EEEE----ECCCTTCCCCEECTTSS
T ss_pred             eecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc-------------ceEE----ecCCCCEEEEEECCCCC
Confidence            467899999999999999999999999999999999876531             1111    23456799999999999


Q ss_pred             EEEEEeCCCeEEEEECCCc--------eeEeecCCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCcceeEEE-----
Q 008467          289 LLATGSYDGQARIWSTNGD--------LKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQF-----  354 (564)
Q Consensus       289 ~l~sg~~dg~i~vw~~~~~--------~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~-----  354 (564)
                      +|++|+.|+.+++|+....        ....+.+|.+.|.++.|+|++ ..|++|+.|++|++||+.++..+..+     
T Consensus       122 ~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~  201 (380)
T 3iz6_a          122 SVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFP  201 (380)
T ss_dssp             EEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSS
T ss_pred             EEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccC
Confidence            9999999999999997531        334678999999999999974 57999999999999999999888776     


Q ss_pred             eecccCeEEEEcC--CCceEEEEeCCCeEEEEEcC-CCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 008467          355 EFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIG-ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD  431 (564)
Q Consensus       355 ~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~-~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~  431 (564)
                      ..|...+..+.|.  +...|++++.|+.|++|++. ...++..+.+|.+.|++++|+|++++|++|+.||+|++||++++
T Consensus       202 ~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~  281 (380)
T 3iz6_a          202 SGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG  281 (380)
T ss_dssp             SSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT
T ss_pred             CCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC
Confidence            4577788888885  45789999999999999997 45788899999999999999999999999999999999999999


Q ss_pred             eeeeeccccc-------ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEE----eCCCCCEEEEEE
Q 008467          432 KYVHDLREHS-------KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL----NGHREPVYSLAF  500 (564)
Q Consensus       432 ~~~~~~~~~~-------~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~----~~h~~~i~~~~~  500 (564)
                      ..+..+..+.       ..|.+++|+|++.         +|++|+.||.|++||+..++.+..+    .+|...|++++|
T Consensus       282 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~---------~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~  352 (380)
T 3iz6_a          282 HQLQVYNREPDRNDNELPIVTSVAFSISGR---------LLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGL  352 (380)
T ss_dssp             EEEEEECCCCSSSCCSSCSCSEEEECSSSS---------EEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEE
T ss_pred             cEEEEecccccccccccCceEEEEECCCCC---------EEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEE
Confidence            8887765443       2488999999886         7899999999999999999988877    689999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCe
Q 008467          501 SPTGEYLASGSLDKSMHIWSLKEGK  525 (564)
Q Consensus       501 spdg~~lasgs~dg~i~iw~~~~~~  525 (564)
                      +|||++||+||.||+|+||++..++
T Consensus       353 s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          353 SSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             CSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             CCCCCEEEEeeCCCCEEEEecCCCc
Confidence            9999999999999999999997653

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-43  Score=349.99  Aligned_cols=295  Identities=25%  Similarity=0.418  Sum_probs=235.7

Q ss_pred             eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467          209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  288 (564)
Q Consensus       209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  288 (564)
                      +..+.+|..+|.+++|+|+  +||+|+.|++|+||++..+..         .  .....  ....|...|.+++|+|+++
T Consensus         7 ~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~---------~--~~~~~--~~~~h~~~v~~v~~sp~~~   71 (330)
T 2hes_X            7 IKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF---------T--LIDVL--DETAHKKAIRSVAWRPHTS   71 (330)
T ss_dssp             EEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC---------E--EEEEE--CTTCCCSCEEEEEECTTSS
T ss_pred             ceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe---------E--EEEEE--ecCCccCCEEEEEECCCCC
Confidence            4578899999999999998  999999999999999865321         0  01111  0112567899999999999


Q ss_pred             EEEEEeCCCeEEEEECC--------CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccC
Q 008467          289 LLATGSYDGQARIWSTN--------GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP  360 (564)
Q Consensus       289 ~l~sg~~dg~i~vw~~~--------~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~  360 (564)
                      +|++|+.|+.|+||+..        ......+.+|..+|.+++|+|++++|++|+.|++|++||++....          
T Consensus        72 ~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~----------  141 (330)
T 2hes_X           72 LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGE----------  141 (330)
T ss_dssp             EEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCC----------
T ss_pred             EEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCC----------
Confidence            99999999999999973        234567889999999999999999999999999999999853210          


Q ss_pred             eEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCC--eeeeecc
Q 008467          361 TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD--KYVHDLR  438 (564)
Q Consensus       361 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~--~~~~~~~  438 (564)
                                                 ...++..+.+|...|.+++|+|++.+|++|+.|++|++||..++  .++..+.
T Consensus       142 ---------------------------~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~  194 (330)
T 2hes_X          142 ---------------------------EYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLN  194 (330)
T ss_dssp             ---------------------------CCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC
T ss_pred             ---------------------------CeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEcc
Confidence                                       01234567889999999999999999999999999999998766  5778899


Q ss_pred             cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC--------eEEEEEeC-CCCCEEEEEEcCCCCEEEE
Q 008467          439 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG--------KLLYSLNG-HREPVYSLAFSPTGEYLAS  509 (564)
Q Consensus       439 ~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~--------~~~~~~~~-h~~~i~~~~~spdg~~las  509 (564)
                      +|...|.+++|+|++..       .+|++|+.|++|++||+..+        .+...+.+ |..+|++++|+|++ +||+
T Consensus       195 ~h~~~v~~~~~~~~~~~-------~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s  266 (330)
T 2hes_X          195 GHEGTVWSSDFDKTEGV-------FRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIAS  266 (330)
T ss_dssp             CCSSCEEEEEECCSSSS-------CEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEE
T ss_pred             CCCCcEEEEEecCCCCe-------eEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEE
Confidence            99999999999997421       26899999999999998754        34555555 88999999999765 8999


Q ss_pred             EeCCCcEEEEeCCCCe--EEEEE-ecCC--CEEEEEEcc--CCCEEEEEEcCCcEEEEEee
Q 008467          510 GSLDKSMHIWSLKEGK--IVKTY-TGNG--GIFEVCWNK--EGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       510 gs~dg~i~iw~~~~~~--~~~~~-~~~~--~i~~~~w~~--~g~~la~~~~~~~v~v~~~~  563 (564)
                      |+.||.|+||+..+++  ..... .++.  .|..++|+|  ++++||+|+.||.|+|||++
T Consensus       267 ~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~  327 (330)
T 2hes_X          267 VGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLE  327 (330)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC-
T ss_pred             EeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEec
Confidence            9999999999998874  33333 3333  699999999  78999999999999999985

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.2e-42  Score=371.09  Aligned_cols=324  Identities=31%  Similarity=0.563  Sum_probs=287.3

Q ss_pred             CceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC
Q 008467          207 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE  286 (564)
Q Consensus       207 ~~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~  286 (564)
                      .....+.+|...|.+++|+|++++|++|+.|+.+++|+....              .+...    ..+...|++++|+|+
T Consensus       212 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~--------------~~~~~----~~~~~~v~~v~~~~d  273 (577)
T 2ymu_A          212 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ--------------LLQTL----TGHSSSVNGVAFRPD  273 (577)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC--------------EEEEE----CCCSSCEEEEEECTT
T ss_pred             cEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCC--------------EEEEE----ecCCCCEEEEEEcCC
Confidence            345677899999999999999999999999999999995421              11111    234678999999999


Q ss_pred             CCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEc
Q 008467          287 GTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW  366 (564)
Q Consensus       287 g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  366 (564)
                      ++.|++++.|+.|++|+.++.....+.+|..+|++++|+|++.+|++++.|++|++||+.... ...+..|...+..+.+
T Consensus       274 ~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~-~~~~~~~~~~v~~~~~  352 (577)
T 2ymu_A          274 GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH-LQTLTGHSSSVWGVAF  352 (577)
T ss_dssp             SSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE-EEEECCCSSCEEEEEE
T ss_pred             CCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-eEEEeCCCCCEEEEEE
Confidence            999999999999999999999888999999999999999999999999999999999986544 4566778888888988


Q ss_pred             CCC-ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEE
Q 008467          367 RNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY  445 (564)
Q Consensus       367 ~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~  445 (564)
                      .++ ..+++++.|+.+++|+. +++.+..+.+|...|++++|+|++++|++++.|+.|++||. +++.+..+..|...|+
T Consensus       353 s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~  430 (577)
T 2ymu_A          353 SPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVW  430 (577)
T ss_dssp             CTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEE
T ss_pred             CCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeE
Confidence            654 56788999999999995 45678889999999999999999999999999999999995 5667788899999999


Q ss_pred             EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 008467          446 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK  525 (564)
Q Consensus       446 ~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~  525 (564)
                      +++|+|++.         +|++++.|++|++||. +++.+..+.+|..+|++++|+|||++||+++.|+.|++|+. +++
T Consensus       431 ~~~~s~d~~---------~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~  499 (577)
T 2ymu_A          431 GVAFSPDDQ---------TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQ  499 (577)
T ss_dssp             EEEECTTSS---------EEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSC
T ss_pred             EEEECCCCC---------EEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCC
Confidence            999999875         7999999999999996 47888899999999999999999999999999999999995 678


Q ss_pred             EEEEEecC-CCEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467          526 IVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDF  562 (564)
Q Consensus       526 ~~~~~~~~-~~i~~~~w~~~g~~la~~~~~~~v~v~~~  562 (564)
                      +++.+.++ ..|.+++|+|+|++||+++.|+.|+|||.
T Consensus       500 ~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~  537 (577)
T 2ymu_A          500 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR  537 (577)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred             EEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC
Confidence            88888765 56999999999999999999999999984

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=9.1e-42  Score=337.83  Aligned_cols=321  Identities=17%  Similarity=0.258  Sum_probs=277.3

Q ss_pred             CccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEe
Q 008467          215 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS  294 (564)
Q Consensus       215 h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~  294 (564)
                      |..+|.+++|+|+|++++++..++.+.+|.....            ......     ..|...|++++|+|++++|++++
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~------------~~~~~~-----~~h~~~v~~~~~~~~~~~l~~~~   70 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRH------------ARQINT-----LNHGEVVCAVTISNPTRHVYTGG   70 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSE------------EEEEEE-----ECCSSCCCEEEECSSSSEEEEEC
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCc------------ccccee-----ccCCCceEEEEEecCCcEEEEcC
Confidence            4578999999999999999887777666643221            111111     13567899999999999999999


Q ss_pred             CCCeEEEEECCCc----eeEeec--CCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcc--eeEEEeecccCeEEEEc
Q 008467          295 YDGQARIWSTNGD----LKCTLS--KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE--WKQQFEFHSGPTLDVDW  366 (564)
Q Consensus       295 ~dg~i~vw~~~~~----~~~~~~--~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~  366 (564)
                       ||.|++|+....    ....+.  .|..+|.+++|+|++++|++++.|+.|++||+.+++  ....+..+...+..+.|
T Consensus        71 -dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~  149 (337)
T 1gxr_A           71 -KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI  149 (337)
T ss_dssp             -BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEE
T ss_pred             -CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEE
Confidence             999999997542    222233  799999999999999999999999999999999887  55566778888999999


Q ss_pred             CCC-ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEE
Q 008467          367 RNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY  445 (564)
Q Consensus       367 ~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~  445 (564)
                      .++ ..+++++.|+.|++|++...+++..+.+|...|.+++|+|++++|++++.||.|++||+++++.+..+ .+...+.
T Consensus       150 ~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~v~  228 (337)
T 1gxr_A          150 SPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIF  228 (337)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEE
T ss_pred             CCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee-cCCCceE
Confidence            754 57788999999999999999999999999999999999999999999999999999999999887765 4778899


Q ss_pred             EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 008467          446 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK  525 (564)
Q Consensus       446 ~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~  525 (564)
                      +++|+|++.         +|++++.|+.|++||+.+++. ..+..|..+|.+++|+|+|++|++++.||.|++|++.+++
T Consensus       229 ~~~~s~~~~---------~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~  298 (337)
T 1gxr_A          229 SLGYCPTGE---------WLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA  298 (337)
T ss_dssp             EEEECTTSS---------EEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             EEEECCCCC---------EEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCe
Confidence            999999875         788999999999999998775 4677899999999999999999999999999999999999


Q ss_pred             EEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEEeeC
Q 008467          526 IVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFRM  564 (564)
Q Consensus       526 ~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~~  564 (564)
                      .+........+.+++|+|+|++|++++.||.|.||++.+
T Consensus       299 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~  337 (337)
T 1gxr_A          299 SIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVIY  337 (337)
T ss_dssp             EEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEEEC
T ss_pred             EEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEEeC
Confidence            887777778899999999999999999999999999864

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=8.4e-42  Score=346.50  Aligned_cols=298  Identities=26%  Similarity=0.479  Sum_probs=242.5

Q ss_pred             CCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEee-ccccccCCCCeEEEEECCCCCEEEE
Q 008467          214 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHV-KGRTNEKSKDVTTLDWNGEGTLLAT  292 (564)
Q Consensus       214 ~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~V~~l~~s~~g~~l~s  292 (564)
                      +|...|++++|+|+|++||+|+ |+.++||++.++................... ..........|++++|+|+|++|++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            6999999999999999999976 7899999998765321111000000000000 0000112335999999999999999


Q ss_pred             EeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCce
Q 008467          293 GSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS  371 (564)
Q Consensus       293 g~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (564)
                      |+.||.|++||.. +.....+.+|..+|.+++|+|++.+|++|+.|++|++||+++++....+                 
T Consensus       141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~-----------------  203 (393)
T 1erj_A          141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL-----------------  203 (393)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-----------------
T ss_pred             EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE-----------------
Confidence            9999999999986 4566788999999999999999999999999999999999886543221                 


Q ss_pred             EEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeeeeec-------cccccc
Q 008467          372 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDL-------REHSKE  443 (564)
Q Consensus       372 ~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~-~~~~las~s~dg~i~iwd~~~~~~~~~~-------~~~~~~  443 (564)
                                               .+...+.+++|+| ++++|++|+.|++|++||+.++..+..+       .+|...
T Consensus       204 -------------------------~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~  258 (393)
T 1erj_A          204 -------------------------SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDS  258 (393)
T ss_dssp             -------------------------ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSC
T ss_pred             -------------------------EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCC
Confidence                                     1344688999999 8999999999999999999998877666       578999


Q ss_pred             EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC------------CeEEEEEeCCCCCEEEEEEcCCCCEEEEEe
Q 008467          444 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL------------GKLLYSLNGHREPVYSLAFSPTGEYLASGS  511 (564)
Q Consensus       444 i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~------------~~~~~~~~~h~~~i~~~~~spdg~~lasgs  511 (564)
                      |++++|+|++.         +|++|+.|++|++||+++            +.+...+.+|...|.+++|+|++.+|++|+
T Consensus       259 v~~v~~~~~g~---------~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs  329 (393)
T 1erj_A          259 VYSVVFTRDGQ---------SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS  329 (393)
T ss_dssp             EEEEEECTTSS---------EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEE
T ss_pred             EEEEEECCCCC---------EEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEe
Confidence            99999999875         789999999999999975            345667889999999999999999999999


Q ss_pred             CCCcEEEEeCCCCeEEEEEecC-CCEEEEEEcc------CCCEEEEEEcCCcEEEEEee
Q 008467          512 LDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNK------EGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       512 ~dg~i~iw~~~~~~~~~~~~~~-~~i~~~~w~~------~g~~la~~~~~~~v~v~~~~  563 (564)
                      .||.|++||+.+++.+..+.++ ..|.+++|++      +++.||+|+.|+.|+||+++
T Consensus       330 ~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~  388 (393)
T 1erj_A          330 KDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  388 (393)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             CCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence            9999999999999999888765 4699999886      68999999999999999986

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2e-41  Score=332.51  Aligned_cols=288  Identities=29%  Similarity=0.545  Sum_probs=249.4

Q ss_pred             eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467          209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  288 (564)
Q Consensus       209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  288 (564)
                      ...+.+|...|++++|+|++++||+|+.|+.+++|++.++...             ...    ..+...|.+++|+|+++
T Consensus        16 ~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~-------------~~~----~~h~~~v~~~~~~~~~~   78 (312)
T 4ery_A           16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-------------KTI----SGHKLGISDVAWSSDSN   78 (312)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE-------------EEE----CCCSSCEEEEEECTTSS
T ss_pred             EEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccc-------------hhh----ccCCCceEEEEEcCCCC
Confidence            4577899999999999999999999999999999998765321             111    23567899999999999


Q ss_pred             EEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcC
Q 008467          289 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR  367 (564)
Q Consensus       289 ~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  367 (564)
                      +|++|+.||.|++|+.. +.....+.+|...|.++.|+|++++|++|+.|++|++||+++++.                 
T Consensus        79 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----------------  141 (312)
T 4ery_A           79 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC-----------------  141 (312)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE-----------------
T ss_pred             EEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE-----------------
Confidence            99999999999999975 556778899999999999999999999999999999999987543                 


Q ss_pred             CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecc-cccccEEE
Q 008467          368 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR-EHSKEIYT  446 (564)
Q Consensus       368 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~-~~~~~i~~  446 (564)
                                              +..+.+|...|.+++|+|++++|++|+.||.|++||+++++.+..+. .+...+..
T Consensus       142 ------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~  197 (312)
T 4ery_A          142 ------------------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF  197 (312)
T ss_dssp             ------------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEE
T ss_pred             ------------------------EEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEE
Confidence                                    23456788899999999999999999999999999999988776654 45678999


Q ss_pred             EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEE---EEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 008467          447 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVY---SLAFSPTGEYLASGSLDKSMHIWSLKE  523 (564)
Q Consensus       447 i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~---~~~~spdg~~lasgs~dg~i~iw~~~~  523 (564)
                      ++|+|++.         +|++++.||.|++||+++++++..+.+|...+.   .....+++.+|++|+.||.|++||+.+
T Consensus       198 ~~~~~~~~---------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~  268 (312)
T 4ery_A          198 VKFSPNGK---------YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT  268 (312)
T ss_dssp             EEECTTSS---------EEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTT
T ss_pred             EEECCCCC---------EEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCC
Confidence            99999875         789999999999999999999999988876433   233447889999999999999999999


Q ss_pred             CeEEEEEecC-CCEEEEEEccCCCEEEEEE--cCCcEEEEEee
Q 008467          524 GKIVKTYTGN-GGIFEVCWNKEGDKIAACF--ANHTVCVLDFR  563 (564)
Q Consensus       524 ~~~~~~~~~~-~~i~~~~w~~~g~~la~~~--~~~~v~v~~~~  563 (564)
                      ++++..+.++ ..|..++|+|+++.||+++  .|+.|.||+..
T Consensus       269 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          269 KEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             CCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             chhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            9999998865 4689999999999999987  58999999864

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.4e-41  Score=339.67  Aligned_cols=280  Identities=20%  Similarity=0.385  Sum_probs=252.8

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCc---
Q 008467          273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE---  348 (564)
Q Consensus       273 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~---  348 (564)
                      .|...|++++|+|++.+|++|+.||.|++|+.. +.....+..|...|.+++|+|+|.+|++|+.|+.+++|++...   
T Consensus        62 gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~  141 (354)
T 2pbi_B           62 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNE  141 (354)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTC
T ss_pred             CCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccc
Confidence            356789999999999999999999999999964 5566678889999999999999999999999999999998643   


Q ss_pred             ---ceeEEEeecccCeEEEEcCCC-ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECC--CCCEEEEEeCCCc
Q 008467          349 ---EWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP--TGSLLASCSDDVT  422 (564)
Q Consensus       349 ---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~--~~~~las~s~dg~  422 (564)
                         .....+..|...+..+.|.++ ..+++++.|++|++|++..++++..+.+|...|.+++|+|  ++++|++|+.||+
T Consensus       142 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~  221 (354)
T 2pbi_B          142 NMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKK  221 (354)
T ss_dssp             CSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSC
T ss_pred             cccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCe
Confidence               344567788889999999765 4789999999999999999999999999999999999987  5789999999999


Q ss_pred             EEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCC--CCCEEEEEE
Q 008467          423 AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH--REPVYSLAF  500 (564)
Q Consensus       423 i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h--~~~i~~~~~  500 (564)
                      |++||+++++++..+..|...|.+++|+|++.         +|++|+.|++|++||++.++.+..+..+  ...+.+++|
T Consensus       222 v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~---------~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~  292 (354)
T 2pbi_B          222 AMVWDMRSGQCVQAFETHESDVNSVRYYPSGD---------AFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDF  292 (354)
T ss_dssp             EEEEETTTCCEEEEECCCSSCEEEEEECTTSS---------EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEE
T ss_pred             EEEEECCCCcEEEEecCCCCCeEEEEEeCCCC---------EEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEE
Confidence            99999999999999999999999999999875         7999999999999999998887776543  357899999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC-CCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467          501 SPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLD  561 (564)
Q Consensus       501 spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~-~~i~~~~w~~~g~~la~~~~~~~v~v~~  561 (564)
                      +|+|++|++|+.|+.|++||+.+++.+..+.++ ..|.+++|+|+|++||+|+.|+.|+||+
T Consensus       293 s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          293 SLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             eCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            999999999999999999999999988888764 5699999999999999999999999996

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-44  Score=367.10  Aligned_cols=324  Identities=20%  Similarity=0.380  Sum_probs=276.2

Q ss_pred             ccceEEEEECCCCC-EEEEE----------ECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEEC
Q 008467          216 TSEVCACAWSPAGS-LLASG----------SGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN  284 (564)
Q Consensus       216 ~~~V~~~~~sp~~~-~lasg----------s~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s  284 (564)
                      ...|.+++|+|+++ +||+|          +.|+.|+||++.++.....               .....+...|++++|+
T Consensus        12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~---------------~~~~~~~~~v~~~~~s   76 (416)
T 2pm9_A           12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP---------------IASLQVDSKFNDLDWS   76 (416)
T ss_dssp             EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC---------------SCCCCCSSCEEEEEEC
T ss_pred             hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE---------------EEEEecCCceEEEEEC
Confidence            35688999999986 99999          8999999999976532100               0011245679999999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCC-----ceeEeecCCCCCEEEEEeCCC-CCEEEEeeCCCcEEEEECCCcc------eeE
Q 008467          285 GEGTLLATGSYDGQARIWSTNG-----DLKCTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKTEE------WKQ  352 (564)
Q Consensus       285 ~~g~~l~sg~~dg~i~vw~~~~-----~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~D~~v~iwd~~~~~------~~~  352 (564)
                      |++.+|++|+.||.|++|+...     .....+.+|..+|.+++|+|+ +++|++++.|++|++||+.++.      ...
T Consensus        77 ~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~  156 (416)
T 2pm9_A           77 HNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPL  156 (416)
T ss_dssp             SSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCB
T ss_pred             CCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccc
Confidence            9999999999999999999865     467788899999999999998 8999999999999999998876      222


Q ss_pred             ---EEeecccCeEEEEcCCC--ceEEEEeCCCeEEEEEcCCCceeeEecCC------CcceEEEEECCCC-CEEEEEeCC
Q 008467          353 ---QFEFHSGPTLDVDWRNN--VSFATSSTDNMIYVCKIGENRPIKTFAGH------QGEVNCVKWDPTG-SLLASCSDD  420 (564)
Q Consensus       353 ---~~~~~~~~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~h------~~~i~~v~~~~~~-~~las~s~d  420 (564)
                         .+..|...+.++.|.++  ..+++++.|+.|++|++...+++..+..|      ...|.+++|+|++ .+|++++.|
T Consensus       157 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  236 (416)
T 2pm9_A          157 TPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGS  236 (416)
T ss_dssp             CCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECC
T ss_pred             ccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECC
Confidence               23557778889999765  67899999999999999999988888876      7889999999997 689999999


Q ss_pred             C---cEEEEeCCCC-eeeeecc-cccccEEEEEEcc-CCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCC
Q 008467          421 V---TAKIWNMKQD-KYVHDLR-EHSKEIYTIRWSP-TGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREP  494 (564)
Q Consensus       421 g---~i~iwd~~~~-~~~~~~~-~~~~~i~~i~~~p-~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~  494 (564)
                      +   .|++||+++. .++..+. .|...|.+++|+| ++.         +|++++.||+|++||+++++.+..+.+|..+
T Consensus       237 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~---------~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~  307 (416)
T 2pm9_A          237 DNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEH---------LLLSSGRDNTVLLWNPESAEQLSQFPARGNW  307 (416)
T ss_dssp             SSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSS---------CEEEEESSSEEEEECSSSCCEEEEEECSSSC
T ss_pred             CCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCC---------eEEEEeCCCCEEEeeCCCCccceeecCCCCc
Confidence            9   9999999986 6677777 8999999999999 554         6899999999999999999999999999999


Q ss_pred             EEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCeEEEEE---------------e---------------------cCCCEE
Q 008467          495 VYSLAFSPTG-EYLASGSLDKSMHIWSLKEGKIVKTY---------------T---------------------GNGGIF  537 (564)
Q Consensus       495 i~~~~~spdg-~~lasgs~dg~i~iw~~~~~~~~~~~---------------~---------------------~~~~i~  537 (564)
                      |++++|+|++ .+|++++.||.|++|++.+++.....               .                     ....+.
T Consensus       308 v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (416)
T 2pm9_A          308 CFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSP  387 (416)
T ss_dssp             CCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSC
T ss_pred             eEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCcc
Confidence            9999999999 89999999999999999876532111               0                     123456


Q ss_pred             EEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          538 EVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       538 ~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      .++|+|+|++||+++.|+.|.||++.
T Consensus       388 ~~~~s~dg~~la~~~~d~~v~~w~~~  413 (416)
T 2pm9_A          388 AAHWAFGGKLVQITPDGKGVSITNPK  413 (416)
T ss_dssp             CCEEETTTEEECBCTTSSCBCCBCCC
T ss_pred             ceEEeeCCeEEEEeCCCCeEEEEEec
Confidence            89999999999999999999999874

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=3.9e-42  Score=342.36  Aligned_cols=294  Identities=22%  Similarity=0.334  Sum_probs=238.5

Q ss_pred             ceeEccCCccceEEEEE-----CC-CCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEE
Q 008467          208 DVTILEGHTSEVCACAW-----SP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTL  281 (564)
Q Consensus       208 ~~~~l~~h~~~V~~~~~-----sp-~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l  281 (564)
                      ...+|.||...|++++|     +| ++++|+||+.|++|+||++.+......     . ......    ...|...|+++
T Consensus        13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~-----~-~~~~~~----l~~h~~~V~~~   82 (343)
T 2xzm_R           13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY-----F-GIPHKA----LTGHNHFVSDL   82 (343)
T ss_dssp             EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB-----S-EEEEEE----ECCCSSCEEEE
T ss_pred             eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc-----c-ccccch----hccCCCceEEE
Confidence            34678999999999999     77 899999999999999999875432110     0 011111    23456789999


Q ss_pred             EECCCCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEe---ec
Q 008467          282 DWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE---FH  357 (564)
Q Consensus       282 ~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~---~~  357 (564)
                      +|+|++.++++|+.||.|++||.. +.....+.+|..+|.+++|+|++++|++++.|++|++||+.... .....   .|
T Consensus        83 ~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~  161 (343)
T 2xzm_R           83 ALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-KFSSAEKENH  161 (343)
T ss_dssp             EECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-EEECCTTTSC
T ss_pred             EECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-eeeeecccCC
Confidence            999999999999999999999975 56677889999999999999999999999999999999997433 22222   46


Q ss_pred             ccCeEEEEcCCC-----------ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEE
Q 008467          358 SGPTLDVDWRNN-----------VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW  426 (564)
Q Consensus       358 ~~~~~~~~~~~~-----------~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iw  426 (564)
                      ...+.++.|.+.           ..+++++.|+.|++|+. .......+.+|...|++++|+|+|++|++|+.||+|++|
T Consensus       162 ~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iw  240 (343)
T 2xzm_R          162 SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIW  240 (343)
T ss_dssp             SSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred             CceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEE
Confidence            667888888654           46899999999999994 456677889999999999999999999999999999999


Q ss_pred             eCCCC-eeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE--EEe-----------CCC
Q 008467          427 NMKQD-KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY--SLN-----------GHR  492 (564)
Q Consensus       427 d~~~~-~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~-----------~h~  492 (564)
                      |+... .....+ .+...|.+++|+|++.         +++ ++.|+.|++||+.+++...  .+.           +|.
T Consensus       241 d~~~~~~~~~~~-~~~~~v~~v~~sp~~~---------~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (343)
T 2xzm_R          241 DILNLTYPQREF-DAGSTINQIAFNPKLQ---------WVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKN  309 (343)
T ss_dssp             ESSCCSSCSEEE-ECSSCEEEEEECSSSC---------EEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSC
T ss_pred             ECCCCcccceee-cCCCcEEEEEECCCCC---------EEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCC
Confidence            99543 333333 3556799999999864         454 5568899999998765432  443           678


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 008467          493 EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG  524 (564)
Q Consensus       493 ~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~  524 (564)
                      ..|++++|+|+|++||+|+.||.|++|++.++
T Consensus       310 ~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          310 PQCTSLAWNALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             CCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred             CceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence            88999999999999999999999999998654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=5.6e-41  Score=332.91  Aligned_cols=293  Identities=25%  Similarity=0.383  Sum_probs=247.0

Q ss_pred             eEccCCccceEEEEECCC-CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467          210 TILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  288 (564)
Q Consensus       210 ~~l~~h~~~V~~~~~sp~-~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  288 (564)
                      .+|+||.+.|++++|+|+ +++|||||.|++|+|||+.+.....        .......    ..|...|++++|+|+|+
T Consensus        32 ~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~--------~~~~~~l----~~h~~~V~~~~~s~dg~   99 (340)
T 4aow_A           32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNY--------GIPQRAL----RGHSHFVSDVVISSDGQ   99 (340)
T ss_dssp             EEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCS--------EEEEEEE----CCCSSCEEEEEECTTSS
T ss_pred             EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc--------ceeeEEE----eCCCCCEEEEEECCCCC
Confidence            468999999999999998 6899999999999999997653211        1111222    24567899999999999


Q ss_pred             EEEEEeCCCeEEEEECCCc-eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCccee-EEEeecccCeEEEEc
Q 008467          289 LLATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK-QQFEFHSGPTLDVDW  366 (564)
Q Consensus       289 ~l~sg~~dg~i~vw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~  366 (564)
                      +|++|+.||.|++|+.... .......+...+..+.+++++.+|++|+.|+.+++||+...... .....|...+..+.|
T Consensus       100 ~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~  179 (340)
T 4aow_A          100 FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRF  179 (340)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEE
T ss_pred             EEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEE
Confidence            9999999999999997654 44556778889999999999999999999999999998765433 234456667777776


Q ss_pred             CC---CceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeeccccccc
Q 008467          367 RN---NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE  443 (564)
Q Consensus       367 ~~---~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~  443 (564)
                      ..   ...+++++.|+.|++|++...+++..+.+|.+.|++++|+|++++|++|+.||+|++||+++.+++..+..+ ..
T Consensus       180 ~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~  258 (340)
T 4aow_A          180 SPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DI  258 (340)
T ss_dssp             CSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SC
T ss_pred             ccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ce
Confidence            43   346788999999999999999999999999999999999999999999999999999999999988877654 57


Q ss_pred             EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEe---------CCCCCEEEEEEcCCCCEEEEEeCCC
Q 008467          444 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN---------GHREPVYSLAFSPTGEYLASGSLDK  514 (564)
Q Consensus       444 i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---------~h~~~i~~~~~spdg~~lasgs~dg  514 (564)
                      +.++.|+|++.          +++++.|+.|++||++.+..+..+.         +|...|++++|+|||++||+|+.||
T Consensus       259 v~~~~~~~~~~----------~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg  328 (340)
T 4aow_A          259 INALCFSPNRY----------WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDN  328 (340)
T ss_dssp             EEEEEECSSSS----------EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTS
T ss_pred             EEeeecCCCCc----------eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCC
Confidence            99999998763          5667789999999999888776653         5788999999999999999999999


Q ss_pred             cEEEEeCCCCe
Q 008467          515 SMHIWSLKEGK  525 (564)
Q Consensus       515 ~i~iw~~~~~~  525 (564)
                      .|+||++++|+
T Consensus       329 ~v~iW~~~tGt  339 (340)
T 4aow_A          329 LVRVWQVTIGT  339 (340)
T ss_dssp             CEEEEEEEC--
T ss_pred             EEEEEeCCCcC
Confidence            99999999875

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.5e-42  Score=348.75  Aligned_cols=282  Identities=20%  Similarity=0.366  Sum_probs=249.5

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcc--
Q 008467          273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE--  349 (564)
Q Consensus       273 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~--  349 (564)
                      +|...|++++|+|++++|++|+.||.|+||+.. +.....+..|...|.+++|+|+|++|++|+.|+++++||+.+..  
T Consensus        64 gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~  143 (380)
T 3iz6_a           64 GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADR  143 (380)
T ss_dssp             CCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSC
T ss_pred             ccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccc
Confidence            356789999999999999999999999999975 55667889999999999999999999999999999999986532  


Q ss_pred             -----eeEEEeecccCeEEEEcCC--CceEEEEeCCCeEEEEEcCCCceeeEe-----cCCCcceEEEEECC-CCCEEEE
Q 008467          350 -----WKQQFEFHSGPTLDVDWRN--NVSFATSSTDNMIYVCKIGENRPIKTF-----AGHQGEVNCVKWDP-TGSLLAS  416 (564)
Q Consensus       350 -----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~-----~~h~~~i~~v~~~~-~~~~las  416 (564)
                           ....+..|.+.+..+.|.+  ...+++++.|+.|++|++.++..+..+     .+|...|.+++|++ ++.+|++
T Consensus       144 ~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s  223 (380)
T 3iz6_a          144 DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFIS  223 (380)
T ss_dssp             CCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEE
T ss_pred             cCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEE
Confidence                 3345667788888888765  456999999999999999999888777     68999999999987 8899999


Q ss_pred             EeCCCcEEEEeCC-CCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCC---
Q 008467          417 CSDDVTAKIWNMK-QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR---  492 (564)
Q Consensus       417 ~s~dg~i~iwd~~-~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~---  492 (564)
                      |+.|++|++||++ ....+..+.+|...|.+++|+|++.         +|++|+.||+|++||+++++.+..+..+.   
T Consensus       224 gs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~---------~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~  294 (380)
T 3iz6_a          224 GSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ---------RFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN  294 (380)
T ss_dssp             EETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSS---------EEEEECSSSCEEEEETTTTEEEEEECCCCSSS
T ss_pred             EECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCC---------eEEEEcCCCeEEEEECCCCcEEEEeccccccc
Confidence            9999999999998 4567788899999999999999875         79999999999999999999988876543   


Q ss_pred             ----CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe-----cCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          493 ----EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT-----GNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       493 ----~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~-----~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                          ..|++++|+|+|++|++|+.||.|++||+.+++.+..+.     +.+.|.+++|+|+|++||+|+.|+.|+||++.
T Consensus       295 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~  374 (380)
T 3iz6_a          295 DNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS  374 (380)
T ss_dssp             CCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred             ccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence                248999999999999999999999999999998887762     24569999999999999999999999999975

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.8e-40  Score=342.64  Aligned_cols=317  Identities=25%  Similarity=0.456  Sum_probs=281.3

Q ss_pred             eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467          209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  288 (564)
Q Consensus       209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  288 (564)
                      ...+.+|...|.. ++++++++|++|+.||+|++||+.++..             ....    ..|...|++++|+  +.
T Consensus       111 ~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~-------------~~~~----~~h~~~v~~~~~~--~~  170 (445)
T 2ovr_B          111 PKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKC-------------LRTL----VGHTGGVWSSQMR--DN  170 (445)
T ss_dssp             CEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCE-------------EEEC----CCCSSCEEEEEEE--TT
T ss_pred             eEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcE-------------EEEE----cCCCCCEEEEEec--CC
Confidence            4578899988644 3666799999999999999999976542             1111    2456789999997  67


Q ss_pred             EEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcC
Q 008467          289 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR  367 (564)
Q Consensus       289 ~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  367 (564)
                      ++++|+.||.|++|+.. +.....+.+|..+|.++.|+  ++.+++|+.|++|++||+.+++....+..|..++.++.| 
T Consensus       171 ~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~-  247 (445)
T 2ovr_B          171 IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY-  247 (445)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE-
T ss_pred             EEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE-
Confidence            99999999999999975 56677889999999999996  578999999999999999999999999999999999999 


Q ss_pred             CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEE
Q 008467          368 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI  447 (564)
Q Consensus       368 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i  447 (564)
                      +...+++++.|+.|++|++....++..+.+|...|.+++|  ++.++++|+.|+.|++||+.+++.+..+..|...+.++
T Consensus       248 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~  325 (445)
T 2ovr_B          248 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM  325 (445)
T ss_dssp             CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEE
T ss_pred             CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEE
Confidence            6677899999999999999999999999999999999999  78999999999999999999999999999999999998


Q ss_pred             EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeC---CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 008467          448 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG---HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG  524 (564)
Q Consensus       448 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~  524 (564)
                      .+.+.           +|++|+.||.|++||+++++.+..+.+   |..+|++++|+  +++|++|+.||.|++||+.++
T Consensus       326 ~~~~~-----------~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~  392 (445)
T 2ovr_B          326 ELKDN-----------ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTG  392 (445)
T ss_dssp             EEETT-----------EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTC
T ss_pred             EEeCC-----------EEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCC
Confidence            88542           689999999999999999999999886   88899999996  679999999999999999999


Q ss_pred             eEEEEEe------cCCCEEEEEEccCCCEEEEEEcCCc----EEEEEee
Q 008467          525 KIVKTYT------GNGGIFEVCWNKEGDKIAACFANHT----VCVLDFR  563 (564)
Q Consensus       525 ~~~~~~~------~~~~i~~~~w~~~g~~la~~~~~~~----v~v~~~~  563 (564)
                      +.+..+.      ..+.|.+++|+|+|..||+|+.||+    +.||||+
T Consensus       393 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~  441 (445)
T 2ovr_B          393 EFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  441 (445)
T ss_dssp             CEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             ceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECC
Confidence            9988882      3456999999999999999999998    9999986

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=5e-40  Score=353.16  Aligned_cols=328  Identities=18%  Similarity=0.299  Sum_probs=274.0

Q ss_pred             ceeEccCCccceEEEEECCCCC-EEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCC---CeEEEEE
Q 008467          208 DVTILEGHTSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSK---DVTTLDW  283 (564)
Q Consensus       208 ~~~~l~~h~~~V~~~~~sp~~~-~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~V~~l~~  283 (564)
                      ....+.+|...|.+++|+|+++ +|++|+.|+.+++||+.++..             .....    .+..   .|++++|
T Consensus       152 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~-------------~~~~~----~~~~~~~~v~~~~~  214 (615)
T 1pgu_A          152 SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF-------------SASDR----THHKQGSFVRDVEF  214 (615)
T ss_dssp             EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE-------------EEEEC----SSSCTTCCEEEEEE
T ss_pred             cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcce-------------eeeec----ccCCCCceEEEEEE
Confidence            4567789999999999999997 899999999999999865421             11121    2344   7999999


Q ss_pred             CCC-CCEEEEEeCCCeEEEEECC-CceeEee-c---CCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeec
Q 008467          284 NGE-GTLLATGSYDGQARIWSTN-GDLKCTL-S---KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH  357 (564)
Q Consensus       284 s~~-g~~l~sg~~dg~i~vw~~~-~~~~~~~-~---~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~  357 (564)
                      +|+ +++|++++.||.|++|+.. +.....+ .   .|..+|.+++|+ ++.+|++++.|++|++||+++++....+..+
T Consensus       215 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~  293 (615)
T 1pgu_A          215 SPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLD  293 (615)
T ss_dssp             CSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             CCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence            999 9999999999999999965 5566666 5   899999999999 9999999999999999999999988888776


Q ss_pred             ----ccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC-----------------------
Q 008467          358 ----SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-----------------------  410 (564)
Q Consensus       358 ----~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~-----------------------  410 (564)
                          ...+..+.|.+...+++++.++.|++|++....++..+.+|.+.|.+++| |+                       
T Consensus       294 ~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~  372 (615)
T 1pgu_A          294 KQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHS  372 (615)
T ss_dssp             TTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCC
T ss_pred             CCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCccc
Confidence                35667777777788999999999999999887777777776665555554 32                       


Q ss_pred             --------------------------------------------------------------------------------
Q 008467          411 --------------------------------------------------------------------------------  410 (564)
Q Consensus       411 --------------------------------------------------------------------------------  410 (564)
                                                                                                      
T Consensus       373 ~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  452 (615)
T 1pgu_A          373 NLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAV  452 (615)
T ss_dssp             SCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEE
T ss_pred             CceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEE
Confidence                                                                                            


Q ss_pred             ---CCEEEEEeC-CCcEEEEeCCCCeee-eecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEE
Q 008467          411 ---GSLLASCSD-DVTAKIWNMKQDKYV-HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLL  485 (564)
Q Consensus       411 ---~~~las~s~-dg~i~iwd~~~~~~~-~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~  485 (564)
                         +++|++++. |+.|++||+.++... ..+..|...|.+++|+|++.         +|++++.||.|++||+.+++.+
T Consensus       453 ~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~---------~l~~~~~dg~i~iw~~~~~~~~  523 (615)
T 1pgu_A          453 SLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSET---------YIAAGDVMGKILLYDLQSREVK  523 (615)
T ss_dssp             EECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSS---------EEEEEETTSCEEEEETTTTEEE
T ss_pred             EEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCC---------EEEEcCCCCeEEEeeCCCCcce
Confidence               334444555 555666665554443 55677889999999999875         7999999999999999999999


Q ss_pred             EEEeC-CCCCEEEEEEcC----------CCCEEEEEeCCCcEEEEeCCCC-eEEEEEecC-CCEEEEEEccCCCEEEEEE
Q 008467          486 YSLNG-HREPVYSLAFSP----------TGEYLASGSLDKSMHIWSLKEG-KIVKTYTGN-GGIFEVCWNKEGDKIAACF  552 (564)
Q Consensus       486 ~~~~~-h~~~i~~~~~sp----------dg~~lasgs~dg~i~iw~~~~~-~~~~~~~~~-~~i~~~~w~~~g~~la~~~  552 (564)
                      ..+.+ |..+|++++|+|          ++++||+|+.||.|++|++.++ +++..+.++ ..|.+++|+|+|+ |++++
T Consensus       524 ~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~  602 (615)
T 1pgu_A          524 TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSG  602 (615)
T ss_dssp             ECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEE
T ss_pred             eEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEec
Confidence            99888 999999999999          9999999999999999999998 777777654 5799999999999 99999


Q ss_pred             cCCcEEEEEeeC
Q 008467          553 ANHTVCVLDFRM  564 (564)
Q Consensus       553 ~~~~v~v~~~~~  564 (564)
                      .|+.|.|||+..
T Consensus       603 ~d~~v~iw~~~~  614 (615)
T 1pgu_A          603 ADACIKRWNVVL  614 (615)
T ss_dssp             TTSCEEEEEEC-
T ss_pred             CCceEEEEeeec
Confidence            999999999863

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.4e-40  Score=362.71  Aligned_cols=293  Identities=25%  Similarity=0.433  Sum_probs=247.0

Q ss_pred             eEccCCccceEEEEECCCC-CEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467          210 TILEGHTSEVCACAWSPAG-SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  288 (564)
Q Consensus       210 ~~l~~h~~~V~~~~~sp~~-~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  288 (564)
                      ..+++|.+.|++++|+|++ .+|+|||.|++|+||++.+.....       . .....    ...|...|++++|+|+|+
T Consensus       376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~-------~-~~~~~----~~~h~~~v~~v~~s~~g~  443 (694)
T 3dm0_A          376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY-------G-VAQRR----LTGHSHFVEDVVLSSDGQ  443 (694)
T ss_dssp             EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS-------C-EEEEE----EECCSSCEEEEEECTTSS
T ss_pred             hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc-------c-cccce----ecCCCCcEEEEEECCCCC
Confidence            4688999999999999975 799999999999999987543110       0 11111    234567899999999999


Q ss_pred             EEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcC
Q 008467          289 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR  367 (564)
Q Consensus       289 ~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  367 (564)
                      +|++|+.||.|+|||.. +.....+.+|..+|.+++|+|++++|++|+.|++|++||+....... +             
T Consensus       444 ~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~-~-------------  509 (694)
T 3dm0_A          444 FALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYT-I-------------  509 (694)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE-E-------------
T ss_pred             EEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCccee-e-------------
Confidence            99999999999999976 45667889999999999999999999999999999999975432110 0             


Q ss_pred             CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCC--CEEEEEeCCCcEEEEeCCCCeeeeecccccccEE
Q 008467          368 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG--SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY  445 (564)
Q Consensus       368 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~--~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~  445 (564)
                                              .....+|...|.+++|+|++  ..|++|+.|++|++||+++.++...+.+|...|+
T Consensus       510 ------------------------~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~  565 (694)
T 3dm0_A          510 ------------------------SEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVS  565 (694)
T ss_dssp             ------------------------CSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred             ------------------------ccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEE
Confidence                                    01124688899999999987  6899999999999999999999999999999999


Q ss_pred             EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 008467          446 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK  525 (564)
Q Consensus       446 ~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~  525 (564)
                      +++|+|++.         +|++|+.||+|++||+++++++..+.. ...|.+++|+|++.+|++++. +.|+|||+++++
T Consensus       566 ~v~~spdg~---------~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~-~~i~iwd~~~~~  634 (694)
T 3dm0_A          566 TVAVSPDGS---------LCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLCAATE-HGIKIWDLESKS  634 (694)
T ss_dssp             EEEECTTSS---------EEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEEECSSSSEEEEEET-TEEEEEETTTTE
T ss_pred             EEEEeCCCC---------EEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEEEcCCCcEEEEEcC-CCEEEEECCCCC
Confidence            999999875         799999999999999999999888764 467999999999999988765 559999999999


Q ss_pred             EEEEEecC--------------------CCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          526 IVKTYTGN--------------------GGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       526 ~~~~~~~~--------------------~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      ++..+...                    ..+.+++|+|+|++|++|+.||.|+|||+.
T Consensus       635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          635 IVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             EEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             ChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            88776421                    126789999999999999999999999985

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-39  Score=326.29  Aligned_cols=297  Identities=19%  Similarity=0.325  Sum_probs=256.5

Q ss_pred             eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467          209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  288 (564)
Q Consensus       209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  288 (564)
                      ...+.+|...|++++|+|++++|++|+.||.|++|++.++..             ....    ..+...|++++|+|+++
T Consensus        25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-------------~~~~----~~h~~~v~~~~~~~~~~   87 (369)
T 3zwl_B           25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER-------------LGTL----DGHTGTIWSIDVDCFTK   87 (369)
T ss_dssp             EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCE-------------EEEE----CCCSSCEEEEEECTTSS
T ss_pred             cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchh-------------hhhh----hhcCCcEEEEEEcCCCC
Confidence            356899999999999999999999999999999999876532             1111    23567899999999999


Q ss_pred             EEEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEEEeeCC-----CcEEEEECCCcceeEEEeecccCeE
Q 008467          289 LLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD-----KTAIVWDVKTEEWKQQFEFHSGPTL  362 (564)
Q Consensus       289 ~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~~~~  362 (564)
                      +|++++.||.|++|+... .....+. |..+|.+++|+|++++|++++.+     +.|++||+........+..      
T Consensus        88 ~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~------  160 (369)
T 3zwl_B           88 YCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTK------  160 (369)
T ss_dssp             EEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEE------
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecc------
Confidence            999999999999999764 4455555 88999999999999999999999     9999999876543222111      


Q ss_pred             EEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCc--ceEEEEECCCCCEEEEEeCCCcEEEEeCCC-Ceeeeeccc
Q 008467          363 DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQG--EVNCVKWDPTGSLLASCSDDVTAKIWNMKQ-DKYVHDLRE  439 (564)
Q Consensus       363 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~--~i~~v~~~~~~~~las~s~dg~i~iwd~~~-~~~~~~~~~  439 (564)
                                              ....++..+.+|.+  .+.+++|+|++++|++++.||.|++||+.+ ...+..+..
T Consensus       161 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  216 (369)
T 3zwl_B          161 ------------------------VSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDL  216 (369)
T ss_dssp             ------------------------ECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEEC
T ss_pred             ------------------------cccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEec
Confidence                                    11234455666776  899999999999999999999999999998 788888999


Q ss_pred             ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCC-----
Q 008467          440 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK-----  514 (564)
Q Consensus       440 ~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg-----  514 (564)
                      |...|.+++|+|++.         +|++++.||.|++||+++++.+..+. +..++.+++|+|+++++++++.++     
T Consensus       217 ~~~~v~~~~~~~~~~---------~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  286 (369)
T 3zwl_B          217 HEKSISDMQFSPDLT---------YFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVT  286 (369)
T ss_dssp             CSSCEEEEEECTTSS---------EEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-----
T ss_pred             CCCceeEEEECCCCC---------EEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEE
Confidence            999999999999875         78999999999999999999988887 778899999999999999999988     


Q ss_pred             ---------cEEEEeCCCCeEEEEEecC-CCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          515 ---------SMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       515 ---------~i~iw~~~~~~~~~~~~~~-~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                               .|++|+..+++.+..+.++ ..|.+++|+|+|++|++|+.||.|.||+++
T Consensus       287 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~  345 (369)
T 3zwl_B          287 TTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFE  345 (369)
T ss_dssp             --------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEEC
T ss_pred             EEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECc
Confidence                     8999999999999888764 579999999999999999999999999985

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.5e-39  Score=323.74  Aligned_cols=280  Identities=21%  Similarity=0.353  Sum_probs=237.4

Q ss_pred             ccCCCCeEEEEE-----CC-CCCEEEEEeCCCeEEEEECCC--------ceeEeecCCCCCEEEEEeCCCCCEEEEeeCC
Q 008467          272 NEKSKDVTTLDW-----NG-EGTLLATGSYDGQARIWSTNG--------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD  337 (564)
Q Consensus       272 ~~~~~~V~~l~~-----s~-~g~~l~sg~~dg~i~vw~~~~--------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D  337 (564)
                      .+|...|++++|     ++ ++.+|++|+.||.|++|+...        .....+.+|..+|.+++|+|++.++++|+.|
T Consensus        18 ~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D   97 (343)
T 2xzm_R           18 EGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD   97 (343)
T ss_dssp             ECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETT
T ss_pred             ccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCC
Confidence            356788999999     77 999999999999999999752        2445788999999999999999999999999


Q ss_pred             CcEEEEECCCcceeEEEeecccCeEEEEcCCC-ceEEEEeCCCeEEEEEcCCCceeeE--ecCCCcceEEEEECCCC---
Q 008467          338 KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKT--FAGHQGEVNCVKWDPTG---  411 (564)
Q Consensus       338 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~--~~~h~~~i~~v~~~~~~---  411 (564)
                      ++|++||+++++....+..|...+.++.|.++ ..+++++.|+.|++|++........  ..+|...|.+++|+|++   
T Consensus        98 ~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  177 (343)
T 2xzm_R           98 KTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSA  177 (343)
T ss_dssp             SEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSC
T ss_pred             CcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccc
Confidence            99999999999999999999999999999754 5788999999999999974432221  23788999999999987   


Q ss_pred             -------CEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-Ce
Q 008467          412 -------SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-GK  483 (564)
Q Consensus       412 -------~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~  483 (564)
                             .+|++++.|++|++||. .......+..|...|.+++|+|++.         +|++|+.||+|++||+.. ..
T Consensus       178 ~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~---------~l~sgs~dg~v~iwd~~~~~~  247 (343)
T 2xzm_R          178 NKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGK---------YIATGGKDKKLLIWDILNLTY  247 (343)
T ss_dssp             SCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSS---------EEEEEETTCEEEEEESSCCSS
T ss_pred             cccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCC---------EEEEEcCCCeEEEEECCCCcc
Confidence                   78999999999999994 5566778889999999999999885         799999999999999953 33


Q ss_pred             EEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE--EEe------------cCCCEEEEEEccCCCEEE
Q 008467          484 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK--TYT------------GNGGIFEVCWNKEGDKIA  549 (564)
Q Consensus       484 ~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~--~~~------------~~~~i~~~~w~~~g~~la  549 (564)
                      ....+. +...|.+++|+|++++|++| .|+.|++|++.+++...  .+.            ....+.+++|+|+|++||
T Consensus       248 ~~~~~~-~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~  325 (343)
T 2xzm_R          248 PQREFD-AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLF  325 (343)
T ss_dssp             CSEEEE-CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEE
T ss_pred             cceeec-CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEE
Confidence            334443 45679999999999988765 47779999998876543  332            124589999999999999


Q ss_pred             EEEcCCcEEEEEee
Q 008467          550 ACFANHTVCVLDFR  563 (564)
Q Consensus       550 ~~~~~~~v~v~~~~  563 (564)
                      +|+.||.|+||+++
T Consensus       326 sg~~Dg~v~~w~~~  339 (343)
T 2xzm_R          326 AGFTDGVIRTFSFE  339 (343)
T ss_dssp             EEETTSEEEEEEEE
T ss_pred             EecCCceEEEEEEE
Confidence            99999999999985

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=7.1e-40  Score=322.59  Aligned_cols=246  Identities=26%  Similarity=0.461  Sum_probs=221.2

Q ss_pred             eEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE
Q 008467          210 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL  289 (564)
Q Consensus       210 ~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~  289 (564)
                      ..+.+|...|.+++|+|++.++++|+.|++|++||+.++...             ...    ..+...+.+++|+|++++
T Consensus        74 ~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~-------------~~~----~~~~~~~~~~~~spdg~~  136 (321)
T 3ow8_A           74 WSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQI-------------KSI----DAGPVDAWTLAFSPDSQY  136 (321)
T ss_dssp             EEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE-------------EEE----ECCTTCCCCEEECTTSSE
T ss_pred             eeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEE-------------EEE----eCCCccEEEEEECCCCCE
Confidence            357899999999999999999999999999999999765321             111    123456889999999999


Q ss_pred             EEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCC
Q 008467          290 LATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN  368 (564)
Q Consensus       290 l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  368 (564)
                      |++|+.||.|++|+.. +.....+..|...|.+++|+|++++|++|+.|++|++||+++++.                  
T Consensus       137 l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~------------------  198 (321)
T 3ow8_A          137 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKL------------------  198 (321)
T ss_dssp             EEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE------------------
T ss_pred             EEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcE------------------
Confidence            9999999999999976 455667888999999999999999999999999999999987543                  


Q ss_pred             CceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEE
Q 008467          369 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR  448 (564)
Q Consensus       369 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~  448 (564)
                                             +..+.+|...|.+++|+|++++|++|+.|++|++||+++...+..+.+|...|.+++
T Consensus       199 -----------------------~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~  255 (321)
T 3ow8_A          199 -----------------------LHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVA  255 (321)
T ss_dssp             -----------------------EEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred             -----------------------EEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEE
Confidence                                   345667889999999999999999999999999999999999999999999999999


Q ss_pred             EccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 008467          449 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK  522 (564)
Q Consensus       449 ~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~  522 (564)
                      |+|++.         +|++|+.|++|++||+.+++++.++.+|..+|++++|+|+|++|++++.||.|+|||..
T Consensus       256 ~sp~~~---------~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          256 FCPDDT---------HFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             ECTTSS---------EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             ECCCCC---------EEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            999875         79999999999999999999999999999999999999999999999999999999964

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-40  Score=368.88  Aligned_cols=332  Identities=14%  Similarity=0.194  Sum_probs=260.9

Q ss_pred             EccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEE
Q 008467          211 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL  290 (564)
Q Consensus       211 ~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l  290 (564)
                      ...||...|++++|+|++++||+|+.||+|+||+..+...             ...     ..+...|++++|+| |++|
T Consensus        12 ~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~-------------~~~-----~~~~~~V~~l~fsp-g~~L   72 (902)
T 2oaj_A           12 NKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEV-------------VIK-----LEDRSAIKEMRFVK-GIYL   72 (902)
T ss_dssp             EEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEE-------------EEE-----CSSCCCEEEEEEET-TTEE
T ss_pred             cccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEE-------------EEE-----cCCCCCEEEEEEcC-CCEE
Confidence            4468999999999999999999999999999999754321             111     12356899999999 8899


Q ss_pred             EEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeE-----------EEeecc
Q 008467          291 ATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ-----------QFEFHS  358 (564)
Q Consensus       291 ~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~-----------~~~~~~  358 (564)
                      ++++.|+.|++||.. +.....+. |.+.|++++|+|++++|++|+.||+|++||+.++....           .+..|.
T Consensus        73 ~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~  151 (902)
T 2oaj_A           73 VVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARL  151 (902)
T ss_dssp             EEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCC
T ss_pred             EEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCC
Confidence            999999999999986 45555564 77899999999999999999999999999999877531           223467


Q ss_pred             cCeEEEEcCCC--ceEEEEeCCCeEEEEEcCCCceeeEecCC------------------CcceEEEEECCCCCEEEEEe
Q 008467          359 GPTLDVDWRNN--VSFATSSTDNMIYVCKIGENRPIKTFAGH------------------QGEVNCVKWDPTGSLLASCS  418 (564)
Q Consensus       359 ~~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~h------------------~~~i~~v~~~~~~~~las~s  418 (564)
                      +++.++.|.++  ..+++++.|+.| +|++...+++..+.+|                  ...|++++|+|+|++||+|+
T Consensus       152 ~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs  230 (902)
T 2oaj_A          152 SPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIH  230 (902)
T ss_dssp             CCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEE
T ss_pred             CCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEE
Confidence            78999999875  578899999999 9999999988888766                  56799999999999999999


Q ss_pred             CCCcEEEEeCCCCeeeee--cc---c-------------ccccEEEEEEccCCC---------C-CC-------------
Q 008467          419 DDVTAKIWNMKQDKYVHD--LR---E-------------HSKEIYTIRWSPTGS---------G-TN-------------  457 (564)
Q Consensus       419 ~dg~i~iwd~~~~~~~~~--~~---~-------------~~~~i~~i~~~p~~~---------~-~~-------------  457 (564)
                      .||+|++||+++++++..  +.   .             |...|++++|+|...         + ..             
T Consensus       231 ~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~  310 (902)
T 2oaj_A          231 EDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDL  310 (902)
T ss_dssp             TTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred             CCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence            999999999998887643  21   1             345799999954210         0 00             


Q ss_pred             --------------------------------------------CC-----CCcEEEEEEeCCCeEEEEeCCCCeEEEE-
Q 008467          458 --------------------------------------------NP-----NQQLILASASFDSTVKLWDVELGKLLYS-  487 (564)
Q Consensus       458 --------------------------------------------~~-----~~~~~l~s~s~dg~i~iwd~~~~~~~~~-  487 (564)
                                                                  .|     .+...+++++.||+|++||+.++..... 
T Consensus       311 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~  390 (902)
T 2oaj_A          311 GYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKA  390 (902)
T ss_dssp             EECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCG
T ss_pred             CCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCccccc
Confidence                                                        00     0111456777889999999877643321 


Q ss_pred             ----------------------------------------EeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 008467          488 ----------------------------------------LNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV  527 (564)
Q Consensus       488 ----------------------------------------~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~  527 (564)
                                                              +.+|...+.+++|+|||++||+|+.|++|++||+.++.+.
T Consensus       391 ~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~  470 (902)
T 2oaj_A          391 SLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQ  470 (902)
T ss_dssp             GGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTT
T ss_pred             ccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCcccc
Confidence                                                    2334444555667899999999999999999999887531


Q ss_pred             --EEE----------ecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          528 --KTY----------TGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       528 --~~~----------~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                        ..+          .....|.+++|+|||++||+|+.|++|+|||+.
T Consensus       471 ~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~  518 (902)
T 2oaj_A          471 DNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYE  518 (902)
T ss_dssp             TTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred             CCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEec
Confidence              111          123579999999999999999999999999985

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=3.8e-40  Score=333.12  Aligned_cols=285  Identities=15%  Similarity=0.249  Sum_probs=238.5

Q ss_pred             eeEccCCccceEEEEECCCC-CEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC-C
Q 008467          209 VTILEGHTSEVCACAWSPAG-SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-E  286 (564)
Q Consensus       209 ~~~l~~h~~~V~~~~~sp~~-~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~  286 (564)
                      ...+.+|...|++++|+|++ ++||+|+.|+.|+||++.++...          ..+     ....+...|++++|+| +
T Consensus        66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----------~~~-----~~~~h~~~v~~~~~~~~~  130 (383)
T 3ei3_B           66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT----------SFI-----QGMGPGDAITGMKFNQFN  130 (383)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE----------EEE-----CCCSTTCBEEEEEEETTE
T ss_pred             EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc----------eee-----ecCCcCCceeEEEeCCCC
Confidence            34678999999999999998 99999999999999999765321          000     1123567899999999 7


Q ss_pred             CCEEEEEeCCCeEEEEECCCceeEeecCC---CCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEE
Q 008467          287 GTLLATGSYDGQARIWSTNGDLKCTLSKH---KGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD  363 (564)
Q Consensus       287 g~~l~sg~~dg~i~vw~~~~~~~~~~~~h---~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~  363 (564)
                      +.+|++++.||.|++|+..+.....+..|   ...|.+++|+|++++|++|+.|+.|++||++ +.              
T Consensus       131 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~--------------  195 (383)
T 3ei3_B          131 TNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GH--------------  195 (383)
T ss_dssp             EEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SC--------------
T ss_pred             CCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CC--------------
Confidence            89999999999999999988766666544   4889999999999999999999999999984 22              


Q ss_pred             EEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCC-EEEEEeCCCcEEEEeCCC----Ceeeeecc
Q 008467          364 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQ----DKYVHDLR  438 (564)
Q Consensus       364 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~-~las~s~dg~i~iwd~~~----~~~~~~~~  438 (564)
                                                 ++..+.+|.+.|.+++|+|+++ +|++|+.|++|++||+++    ..++..+ 
T Consensus       196 ---------------------------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-  247 (383)
T 3ei3_B          196 ---------------------------EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-  247 (383)
T ss_dssp             ---------------------------EEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-
T ss_pred             ---------------------------EEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-
Confidence                                       2345667999999999999999 999999999999999987    5566555 


Q ss_pred             cccccEEEEEEcc-CCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCC-----------------CCEEEEEE
Q 008467          439 EHSKEIYTIRWSP-TGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR-----------------EPVYSLAF  500 (564)
Q Consensus       439 ~~~~~i~~i~~~p-~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-----------------~~i~~~~~  500 (564)
                      .|...|.+++|+| ++.         +|++++.|+.|++||+++++.+..+.+|.                 ..+..++|
T Consensus       248 ~~~~~v~~~~~s~~~~~---------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  318 (383)
T 3ei3_B          248 PHEKPVNAAYFNPTDST---------KLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGR  318 (383)
T ss_dssp             ECSSCEEEEEECTTTSC---------EEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEEC
T ss_pred             cCCCceEEEEEcCCCCC---------EEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEe
Confidence            6999999999999 775         78999999999999999887666665442                 34555777


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC---CCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          501 SPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN---GGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       501 spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~---~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      +|+|++  +|+.||.|+|||+.+++++..+.+.   +.+..++|+|+|++||+|+ |+.|.|||++
T Consensus       319 s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~  381 (383)
T 3ei3_B          319 YPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRE  381 (383)
T ss_dssp             BCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC
T ss_pred             cCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecC
Confidence            777777  7889999999999999999998752   3456679999999999996 8999999985

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2e-40  Score=339.29  Aligned_cols=319  Identities=13%  Similarity=0.184  Sum_probs=262.7

Q ss_pred             ceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCC
Q 008467          218 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDG  297 (564)
Q Consensus       218 ~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg  297 (564)
                      .+++++|+|++++|++|+.|+.+++|++.++......                  .....+....|++++++|++|+.||
T Consensus        58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~l~~~~~dg  119 (420)
T 3vl1_A           58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKML------------------KRADYTAVDTAKLQMRRFILGTTEG  119 (420)
T ss_dssp             CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTS------------------CSCCEEEEEEECSSSCEEEEEETTS
T ss_pred             cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEE------------------ecCCceEEEEEecCCCEEEEEECCC
Confidence            3557899999999999999999999998764322110                  0113345557899999999999999


Q ss_pred             eEEEEECCCc-eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCC-ceEEEE
Q 008467          298 QARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATS  375 (564)
Q Consensus       298 ~i~vw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  375 (564)
                      .|++|+.... ....+.+|.++|.+++|+|++++|++|+.|++|++||+.+++....+..|...+.++.|.++ ..++++
T Consensus       120 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~  199 (420)
T 3vl1_A          120 DIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSA  199 (420)
T ss_dssp             CEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEE
T ss_pred             CEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEE
Confidence            9999998654 44556799999999999999999999999999999999999999999999999999999754 578899


Q ss_pred             eCCCeEEEEEcCCCceeeEecCC---Ccce---------------------EEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 008467          376 STDNMIYVCKIGENRPIKTFAGH---QGEV---------------------NCVKWDPTGSLLASCSDDVTAKIWNMKQD  431 (564)
Q Consensus       376 ~~d~~i~~~~~~~~~~~~~~~~h---~~~i---------------------~~v~~~~~~~~las~s~dg~i~iwd~~~~  431 (564)
                      +.|+.|++|++..++++..+..|   ...|                     .+++|+|++++|++|+.||.|++||++++
T Consensus       200 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~  279 (420)
T 3vl1_A          200 SLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK  279 (420)
T ss_dssp             ETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC
T ss_pred             cCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC
Confidence            99999999999999988888753   3334                     44556899999999999999999999998


Q ss_pred             eeeeecc-cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE-EEEEeC-CCCCEEEEEEcCCCCEEE
Q 008467          432 KYVHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-LYSLNG-HREPVYSLAFSPTGEYLA  508 (564)
Q Consensus       432 ~~~~~~~-~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~-h~~~i~~~~~spdg~~la  508 (564)
                      +.+..+. .|...|.+++|+|++.        .+|++|+.||.|++||+++++. +..+.+ |..+|.++.| |++++|+
T Consensus       280 ~~~~~~~~~~~~~v~~~~~~~~~~--------~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~  350 (420)
T 3vl1_A          280 EQTIQLPSKFTCSCNSLTVDGNNA--------NYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFV  350 (420)
T ss_dssp             CEEEEECCTTSSCEEEEEECSSCT--------TEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEE
T ss_pred             ceeEEcccccCCCceeEEEeCCCC--------CEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEE
Confidence            8776664 5788999999999874        2789999999999999998754 666665 6778888855 5789999


Q ss_pred             EEeCCCcEEEEeCCCCe----------EEEEEecCCCEEEEEEccCCC---EEEEEEcCCcEEEEEee
Q 008467          509 SGSLDKSMHIWSLKEGK----------IVKTYTGNGGIFEVCWNKEGD---KIAACFANHTVCVLDFR  563 (564)
Q Consensus       509 sgs~dg~i~iw~~~~~~----------~~~~~~~~~~i~~~~w~~~g~---~la~~~~~~~v~v~~~~  563 (564)
                      +|+.||.|++|++.+..          ........+.+.+++|+|+|+   .|++++.+|.+.+|++.
T Consensus       351 s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~  418 (420)
T 3vl1_A          351 SSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS  418 (420)
T ss_dssp             EETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred             EecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence            99999999999987632          112222345789999999999   67777788999999874

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=3.5e-39  Score=346.55  Aligned_cols=345  Identities=17%  Similarity=0.261  Sum_probs=280.9

Q ss_pred             CceeEccCCccc-eEEEEECC--CCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEE
Q 008467          207 SDVTILEGHTSE-VCACAWSP--AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW  283 (564)
Q Consensus       207 ~~~~~l~~h~~~-V~~~~~sp--~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~  283 (564)
                      .....+.+|... |++++|+|  ++++||+|+.||.|+||++.++....     .........    ...+...|.+++|
T Consensus        54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~-----~~~~~~~~~----~~~~~~~v~~~~~  124 (615)
T 1pgu_A           54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESN-----SVEVNVKSE----FQVLAGPISDISW  124 (615)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGT-----EEEEEEEEE----EECCSSCEEEEEE
T ss_pred             ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccc-----cccccccch----hhcccccEEEEEE
Confidence            356778999999 99999999  99999999999999999986431000     000111111    1234678999999


Q ss_pred             CCCCCEEEEEeCC----CeEEEEECCCceeEeecCCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCcceeEEEeecc
Q 008467          284 NGEGTLLATGSYD----GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHS  358 (564)
Q Consensus       284 s~~g~~l~sg~~d----g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~  358 (564)
                      +|++++|++++.+    +.|++|+ .+.....+.+|...|.+++|+|++. .|++++.|+.|++||+.+++....+..|.
T Consensus       125 s~~~~~l~~~~~~~~~~~~v~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~  203 (615)
T 1pgu_A          125 DFEGRRLCVVGEGRDNFGVFISWD-SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHH  203 (615)
T ss_dssp             CTTSSEEEEEECCSSCSEEEEETT-TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSS
T ss_pred             eCCCCEEEEeccCCCCccEEEEEE-CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccC
Confidence            9999999999988    7999999 5567778899999999999999998 79999999999999999999999998888


Q ss_pred             c---CeEEEEcCCC--ceEEEEeCCCeEEEEEcCCCceeeEe-c---CCCcceEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 008467          359 G---PTLDVDWRNN--VSFATSSTDNMIYVCKIGENRPIKTF-A---GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK  429 (564)
Q Consensus       359 ~---~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~~~~~~~-~---~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~  429 (564)
                      .   .+.++.|.++  ..+++++.|+.|++|++..++++..+ .   +|...|.+++|+ ++++|++++.|+.|++||+.
T Consensus       204 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~  282 (615)
T 1pgu_A          204 KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVT  282 (615)
T ss_dssp             CTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETT
T ss_pred             CCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECC
Confidence            8   8999999765  56888999999999999999999888 6   899999999999 99999999999999999998


Q ss_pred             CCeeeeecc---------------------------------------------cccccEEEEEEccC------------
Q 008467          430 QDKYVHDLR---------------------------------------------EHSKEIYTIRWSPT------------  452 (564)
Q Consensus       430 ~~~~~~~~~---------------------------------------------~~~~~i~~i~~~p~------------  452 (564)
                      +++.+..+.                                             .|...|.+++| |+            
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~  361 (615)
T 1pgu_A          283 TSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIME  361 (615)
T ss_dssp             TTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEE
T ss_pred             CCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEE
Confidence            765544332                                             33334444443 22            


Q ss_pred             ---------------------CCCC-----------CC----------------CC-------------------C----
Q 008467          453 ---------------------GSGT-----------NN----------------PN-------------------Q----  461 (564)
Q Consensus       453 ---------------------~~~~-----------~~----------------~~-------------------~----  461 (564)
                                           +...           .+                |+                   .    
T Consensus       362 w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (615)
T 1pgu_A          362 WSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIK  441 (615)
T ss_dssp             TTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             EEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceee
Confidence                                 1100           00                00                   0    


Q ss_pred             --------------cEEEEEEeC-CCeEEEEeCCCCeEE-EEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 008467          462 --------------QLILASASF-DSTVKLWDVELGKLL-YSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK  525 (564)
Q Consensus       462 --------------~~~l~s~s~-dg~i~iwd~~~~~~~-~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~  525 (564)
                                    ..+|++++. |+.|++||+..++.. ..+.+|..+|++++|+|+|++|++|+.||.|++|++.+++
T Consensus       442 ~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~  521 (615)
T 1pgu_A          442 SVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE  521 (615)
T ss_dssp             EEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             ecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCc
Confidence                          125677777 888888888876655 5667899999999999999999999999999999999999


Q ss_pred             EEEEEe--cCCCEEEEEEcc----------CCCEEEEEEcCCcEEEEEee
Q 008467          526 IVKTYT--GNGGIFEVCWNK----------EGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       526 ~~~~~~--~~~~i~~~~w~~----------~g~~la~~~~~~~v~v~~~~  563 (564)
                      .+..+.  ....|.+++|+|          +|++||+|+.|+.|+|||++
T Consensus       522 ~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~  571 (615)
T 1pgu_A          522 VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK  571 (615)
T ss_dssp             EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESS
T ss_pred             ceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECC
Confidence            988876  456799999999          99999999999999999975

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=5.3e-39  Score=333.40  Aligned_cols=317  Identities=23%  Similarity=0.363  Sum_probs=264.8

Q ss_pred             eeEccCCccce-EEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC
Q 008467          209 VTILEGHTSEV-CACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG  287 (564)
Q Consensus       209 ~~~l~~h~~~V-~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g  287 (564)
                      ...+.+|...| .++.|  ++++|++|+.||+|++||+.++..             +...    ..|...|++++|++++
T Consensus       114 ~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~-------------~~~~----~~h~~~V~~l~~~~~~  174 (464)
T 3v7d_B          114 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKF-------------LLQL----SGHDGGVWALKYAHGG  174 (464)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEE-------------EEEE----CCCSSCEEEEEECSTT
T ss_pred             eEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcE-------------EEEE----eCCCcCEEEEEEcCCC
Confidence            35788999886 55555  678999999999999999876531             1112    2456889999999988


Q ss_pred             CEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeC--CCCCEEEEeeCCCcEEEEECCCcce--------------
Q 008467          288 TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWN--KKGDYLLTGSCDKTAIVWDVKTEEW--------------  350 (564)
Q Consensus       288 ~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~--~~~~~l~s~s~D~~v~iwd~~~~~~--------------  350 (564)
                       +|++|+.||.|++|+.. +.....+.+|.++|.+++|+  +++.+|++|+.|++|++||+.++..              
T Consensus       175 -~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  253 (464)
T 3v7d_B          175 -ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVF  253 (464)
T ss_dssp             -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEE
T ss_pred             -EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEe
Confidence             99999999999999976 55677888999999999998  5778999999999999999987653              


Q ss_pred             ---------eEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCC
Q 008467          351 ---------KQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV  421 (564)
Q Consensus       351 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg  421 (564)
                               ...+..|...+..+.. +...+++++.|+.|++|++.+.+++..+.+|...|.+++|+|++++|++|+.||
T Consensus       254 ~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg  332 (464)
T 3v7d_B          254 HTPEENPYFVGVLRGHMASVRTVSG-HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT  332 (464)
T ss_dssp             SCGGGCTTEEEEECCCSSCEEEEEE-ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTS
T ss_pred             eccCCCeEEEEEccCccceEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence                     3344556666666643 345788999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEc
Q 008467          422 TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFS  501 (564)
Q Consensus       422 ~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~s  501 (564)
                      +|++||+.+++++..+.+|...|.++.|++.           +|++|+.||+|++||+.++....... |...+..++|+
T Consensus       333 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~-----------~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~  400 (464)
T 3v7d_B          333 TIRIWDLENGELMYTLQGHTALVGLLRLSDK-----------FLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFY  400 (464)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEECSS-----------EEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEE
T ss_pred             cEEEEECCCCcEEEEEeCCCCcEEEEEEcCC-----------EEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEE
Confidence            9999999999999999999999999999742           79999999999999999988776664 66678889999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCeEEEEE--ecCCCEEEEEEccCCCEEEEEEcCCcEEEE
Q 008467          502 PTGEYLASGSLDKSMHIWSLKEGKIVKTY--TGNGGIFEVCWNKEGDKIAACFANHTVCVL  560 (564)
Q Consensus       502 pdg~~lasgs~dg~i~iw~~~~~~~~~~~--~~~~~i~~~~w~~~g~~la~~~~~~~v~v~  560 (564)
                      |++++|++|+ ||.|++||+++++++..+  .....|.+++|+ ....++++..++.+.++
T Consensus       401 ~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~  459 (464)
T 3v7d_B          401 VSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLE  459 (464)
T ss_dssp             ECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred             eCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence            9999999999 899999999999998763  334569999997 33344455566655443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.7e-39  Score=359.41  Aligned_cols=327  Identities=22%  Similarity=0.328  Sum_probs=281.4

Q ss_pred             eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467          209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  288 (564)
Q Consensus       209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  288 (564)
                      ...+.+|.+.|.+++|||++++||+|+.||.|+||++.++..             ....    ..+...|++++|+|+++
T Consensus         6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~-------------~~~~----~~~~~~v~~~~~s~~~~   68 (814)
T 3mkq_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVE-------------VRSI----QVTETPVRAGKFIARKN   68 (814)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-------------EEEE----ECCSSCEEEEEEEGGGT
T ss_pred             ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCce-------------EEEE----ecCCCcEEEEEEeCCCC
Confidence            457889999999999999999999999999999999876531             1111    13467899999999999


Q ss_pred             EEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCc-ceeEEEeecccCeEEEEc
Q 008467          289 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE-EWKQQFEFHSGPTLDVDW  366 (564)
Q Consensus       289 ~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~  366 (564)
                      +|++|+.||.|++|+.. +.....+.+|.++|++++|+|++.+|++++.|++|++||+.++ .....+..|...+.++.|
T Consensus        69 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~  148 (814)
T 3mkq_A           69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF  148 (814)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEE
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEE
Confidence            99999999999999975 5667788999999999999999999999999999999999887 667778888999999999


Q ss_pred             CC--CceEEEEeCCCeEEEEEcCCCceeeEecCCC-cceEEEEECC--CCCEEEEEeCCCcEEEEeCCCCeeeeeccccc
Q 008467          367 RN--NVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-GEVNCVKWDP--TGSLLASCSDDVTAKIWNMKQDKYVHDLREHS  441 (564)
Q Consensus       367 ~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-~~i~~v~~~~--~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~  441 (564)
                      .+  ...+++++.|+.|++|++....+...+..|. ..+.+++|+|  ++.+|++|+.||.|++||+.++..+..+..|.
T Consensus       149 ~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~  228 (814)
T 3mkq_A          149 NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM  228 (814)
T ss_dssp             ETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCS
T ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCC
Confidence            76  4578999999999999998888777777655 8899999999  99999999999999999999999999999999


Q ss_pred             ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEE
Q 008467          442 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGE--YLASGSLDKSMHIW  519 (564)
Q Consensus       442 ~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~--~lasgs~dg~i~iw  519 (564)
                      ..|.+++|+|++.         +|++++.||.|++||+.+++.+..+..|..+|.+++|+|+|.  ++++++ ++.+.+|
T Consensus       229 ~~v~~~~~~~~~~---------~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~  298 (814)
T 3mkq_A          229 SNVSFAVFHPTLP---------IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVL  298 (814)
T ss_dssp             SCEEEEEECSSSS---------EEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE-TTEEEEE
T ss_pred             CCEEEEEEcCCCC---------EEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe-CCCEEEE
Confidence            9999999999875         799999999999999999999999999999999999999997  456555 5568888


Q ss_pred             eCCCCeEEEEEe--------------------------------------------cCCCEEEEEEccCCCEEEEEEcCC
Q 008467          520 SLKEGKIVKTYT--------------------------------------------GNGGIFEVCWNKEGDKIAACFANH  555 (564)
Q Consensus       520 ~~~~~~~~~~~~--------------------------------------------~~~~i~~~~w~~~g~~la~~~~~~  555 (564)
                      ++..+.....+.                                            ....+..++|+|+|++|++++ ++
T Consensus       299 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~  377 (814)
T 3mkq_A          299 SLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DG  377 (814)
T ss_dssp             ECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TT
T ss_pred             EcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CC
Confidence            876532211111                                            011356899999999999997 88


Q ss_pred             cEEEEEee
Q 008467          556 TVCVLDFR  563 (564)
Q Consensus       556 ~v~v~~~~  563 (564)
                      .+.||+++
T Consensus       378 ~~~i~~~~  385 (814)
T 3mkq_A          378 EYVIYTAL  385 (814)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEECc
Confidence            99999853

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.3e-39  Score=323.42  Aligned_cols=253  Identities=19%  Similarity=0.259  Sum_probs=207.8

Q ss_pred             cCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEE
Q 008467          213 EGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLAT  292 (564)
Q Consensus       213 ~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~s  292 (564)
                      ..|...|.+++|+|++ .|++|+.||+|+|||+.++....        .  ..   .....|...|++++|+|+|++|++
T Consensus        79 ~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~--------~--~~---~~~~~H~~~V~~v~~spdg~~l~s  144 (344)
T 4gqb_B           79 VQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLI--------V--SK---FCKYEHDDIVSTVSVLSSGTQAVS  144 (344)
T ss_dssp             EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCE--------E--EE---EEEECCSSCEEEEEECTTSSEEEE
T ss_pred             eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCcee--------E--ee---ccccCCCCCEEEEEECCCCCEEEE
Confidence            3466789999999985 67899999999999998764321        1  11   111245678999999999999999


Q ss_pred             EeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCc
Q 008467          293 GSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV  370 (564)
Q Consensus       293 g~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (564)
                      |+.||.|++||.. +.....+.+|.+.|.+++|+|++. .|++|+.|++|++||+++++....+.               
T Consensus       145 gs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~---------------  209 (344)
T 4gqb_B          145 GSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIG---------------  209 (344)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC---------------
T ss_pred             EeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeee---------------
Confidence            9999999999975 567778999999999999999985 78999999999999998876543321               


Q ss_pred             eEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEE
Q 008467          371 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW  449 (564)
Q Consensus       371 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~-~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~  449 (564)
                                              ...|...+.+++|+|+ +++|++|+.||+|+|||+++++++..+.+|...|++++|
T Consensus       210 ------------------------~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~f  265 (344)
T 4gqb_B          210 ------------------------CSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVF  265 (344)
T ss_dssp             ----------------------------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEE
T ss_pred             ------------------------cceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence                                    1234556889999985 578899999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeEE
Q 008467          450 SPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGE-YLASGSLDKSMHIWSLKEGKIV  527 (564)
Q Consensus       450 ~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~-~lasgs~dg~i~iw~~~~~~~~  527 (564)
                      +|++.        .+|++|+.|++|+|||+.+++++ .+.+|...|++++|||+++ +|++||.||+|++|++.+..+.
T Consensus       266 sp~g~--------~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~~  335 (344)
T 4gqb_B          266 SPHSV--------PFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPLP  335 (344)
T ss_dssp             CSSSS--------CCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC----
T ss_pred             ccCCC--------eEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCCC
Confidence            99874        26899999999999999988754 6789999999999999986 5779999999999999876543

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.2e-39  Score=330.75  Aligned_cols=295  Identities=21%  Similarity=0.323  Sum_probs=253.1

Q ss_pred             eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC--
Q 008467          209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE--  286 (564)
Q Consensus       209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~--  286 (564)
                      ..++.+|...|++++|+|  ++|++|+.||.|+||++.++.....     ...  ....    ..+...|++++|+|+  
T Consensus         9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~-----~~~--~~~~----~~h~~~v~~~~~~~~~~   75 (397)
T 1sq9_A            9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENP-----KDK--SYSH----FVHKSGLHHVDVLQAIE   75 (397)
T ss_dssp             EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCG-----GGG--EEEE----ECCTTCEEEEEEEEEEE
T ss_pred             hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccC-----CCc--ceEE----ecCCCcEEEEEEecccc
Confidence            457889999999999999  8999999999999999976542110     000  0111    235678999999999  


Q ss_pred             --C---CEEEEEeCCCeEEEEECCCce------eEeecCC-----CCCEEEEEeC----CCCCE-EEEeeCCCcEEEEEC
Q 008467          287 --G---TLLATGSYDGQARIWSTNGDL------KCTLSKH-----KGPIFSLKWN----KKGDY-LLTGSCDKTAIVWDV  345 (564)
Q Consensus       287 --g---~~l~sg~~dg~i~vw~~~~~~------~~~~~~h-----~~~V~~l~~~----~~~~~-l~s~s~D~~v~iwd~  345 (564)
                        |   .+|++++.||.|++|+.....      ...+..|     ..+|.+++|+    |++++ |++++.|+.|++||+
T Consensus        76 ~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  155 (397)
T 1sq9_A           76 RDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKF  155 (397)
T ss_dssp             TTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEE
T ss_pred             cCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeC
Confidence              9   999999999999999975433      6678888     5999999999    99999 999999999999999


Q ss_pred             CC------cceeE-----EEe-------ecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecC---C---Ccc
Q 008467          346 KT------EEWKQ-----QFE-------FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG---H---QGE  401 (564)
Q Consensus       346 ~~------~~~~~-----~~~-------~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~---h---~~~  401 (564)
                      .+      +....     .+.       .+...+.++.|.++..+++++.|+.|++|++...+++..+.+   |   ...
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~  235 (397)
T 1sq9_A          156 HPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS  235 (397)
T ss_dssp             ESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCC
T ss_pred             CccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCc
Confidence            88      66655     553       367788889987655888899999999999999999999999   9   999


Q ss_pred             eEEEEECCCCCEEEEEeCC---CcEEEEeCCCCeeeeeccc-------------ccccEEEEEEccCCCCCCCCCCcEEE
Q 008467          402 VNCVKWDPTGSLLASCSDD---VTAKIWNMKQDKYVHDLRE-------------HSKEIYTIRWSPTGSGTNNPNQQLIL  465 (564)
Q Consensus       402 i~~v~~~~~~~~las~s~d---g~i~iwd~~~~~~~~~~~~-------------~~~~i~~i~~~p~~~~~~~~~~~~~l  465 (564)
                      |.+++|+|++++|++++.|   +.|++||+++++.+..+..             |...|.+++|+|++.         +|
T Consensus       236 i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------~l  306 (397)
T 1sq9_A          236 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE---------TL  306 (397)
T ss_dssp             EEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS---------EE
T ss_pred             cceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCC---------EE
Confidence            9999999999999999999   9999999999999999988             999999999999875         79


Q ss_pred             EEEeCCCeEEEEeCCCCeEEEEEe------CC---------------CCCEEEEEEcCCC----------CEEEEEeCCC
Q 008467          466 ASASFDSTVKLWDVELGKLLYSLN------GH---------------REPVYSLAFSPTG----------EYLASGSLDK  514 (564)
Q Consensus       466 ~s~s~dg~i~iwd~~~~~~~~~~~------~h---------------~~~i~~~~~spdg----------~~lasgs~dg  514 (564)
                      ++++.||.|++||+.+++++..+.      +|               ..+|++++|+|+|          ++|++|+.||
T Consensus       307 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg  386 (397)
T 1sq9_A          307 CSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDR  386 (397)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTT
T ss_pred             EEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCC
Confidence            999999999999999999999999      88               8999999999999          7999999999


Q ss_pred             cEEEEeCCCCe
Q 008467          515 SMHIWSLKEGK  525 (564)
Q Consensus       515 ~i~iw~~~~~~  525 (564)
                      .|++|++.+|+
T Consensus       387 ~i~iw~~~~g~  397 (397)
T 1sq9_A          387 SIRWFREAGGK  397 (397)
T ss_dssp             EEEEEEEEC--
T ss_pred             cEEEEEcCCCC
Confidence            99999998764

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2e-39  Score=330.86  Aligned_cols=248  Identities=27%  Similarity=0.500  Sum_probs=217.5

Q ss_pred             ceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC
Q 008467          208 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG  287 (564)
Q Consensus       208 ~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g  287 (564)
                      ....+.+|...|.+++|+|++++|++|+.|++|+|||+.++..             +..    ...|...|++++|+|++
T Consensus       142 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~-------------~~~----~~~h~~~V~~v~~~p~~  204 (410)
T 1vyh_C          142 FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFEC-------------IRT----MHGHDHNVSSVSIMPNG  204 (410)
T ss_dssp             CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCE-------------EEC----CCCCSSCEEEEEECSSS
T ss_pred             EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-------------eEE----EcCCCCCEEEEEEeCCC
Confidence            3567899999999999999999999999999999999875432             111    12456789999999999


Q ss_pred             CEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEc
Q 008467          288 TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW  366 (564)
Q Consensus       288 ~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  366 (564)
                      .+|++|+.||.|++||.. +.....+.+|...|.++.|+|++.+|++|+.|++|++||+.++.....+.           
T Consensus       205 ~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~-----------  273 (410)
T 1vyh_C          205 DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR-----------  273 (410)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-----------
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEec-----------
Confidence            999999999999999975 56677889999999999999999999999999999999998876554444           


Q ss_pred             CCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC--------------------CCEEEEEeCCCcEEEE
Q 008467          367 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT--------------------GSLLASCSDDVTAKIW  426 (564)
Q Consensus       367 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~--------------------~~~las~s~dg~i~iw  426 (564)
                                                    +|...|.+++|+|+                    +.+|++|+.|++|++|
T Consensus       274 ------------------------------~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iw  323 (410)
T 1vyh_C          274 ------------------------------EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW  323 (410)
T ss_dssp             ------------------------------CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEE
T ss_pred             ------------------------------CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEE
Confidence                                          45555555555553                    7799999999999999


Q ss_pred             eCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCE
Q 008467          427 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY  506 (564)
Q Consensus       427 d~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~  506 (564)
                      |++++.++..+.+|...|.+++|+|++.         +|++|+.||+|++||+.+++++..+.+|...|++++|+|++.+
T Consensus       324 d~~~~~~~~~~~~h~~~v~~v~~~~~g~---------~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~  394 (410)
T 1vyh_C          324 DVSTGMCLMTLVGHDNWVRGVLFHSGGK---------FILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY  394 (410)
T ss_dssp             ETTTTEEEEEEECCSSCEEEEEECSSSS---------CEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSC
T ss_pred             ECCCCceEEEEECCCCcEEEEEEcCCCC---------EEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCE
Confidence            9999999999999999999999999875         6899999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCcEEEEeCC
Q 008467          507 LASGSLDKSMHIWSLK  522 (564)
Q Consensus       507 lasgs~dg~i~iw~~~  522 (564)
                      ||+|+.||+|+||+++
T Consensus       395 l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          395 VVTGSVDQTVKVWECR  410 (410)
T ss_dssp             EEEEETTSEEEEEC--
T ss_pred             EEEEeCCCcEEEEeCC
Confidence            9999999999999864

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.1e-38  Score=370.34  Aligned_cols=336  Identities=21%  Similarity=0.349  Sum_probs=284.5

Q ss_pred             eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467          209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  288 (564)
Q Consensus       209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  288 (564)
                      ...+.+|...|++++|+|+|++||+|+.||+|+||++.++..             ....    ..|...|++++|+|+|+
T Consensus       608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~-------------~~~~----~~h~~~v~~~~~s~~~~  670 (1249)
T 3sfz_A          608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK-------------LLDI----KAHEDEVLCCAFSSDDS  670 (1249)
T ss_dssp             SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-------------EEEE----CCCSSCEEEEEECTTSS
T ss_pred             eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCE-------------EEEe----ccCCCCEEEEEEecCCC
Confidence            457789999999999999999999999999999999987542             1111    24567899999999999


Q ss_pred             EEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCC--CCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEE
Q 008467          289 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNK--KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD  365 (564)
Q Consensus       289 ~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~  365 (564)
                      +|++|+.||.|++|+.. +.....+.+|..+|.+++|+|  ++..+++|+.|++|++||+.++.....+..|...+.++.
T Consensus       671 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~  750 (1249)
T 3sfz_A          671 YIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCR  750 (1249)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEE
T ss_pred             EEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEE
Confidence            99999999999999975 567778899999999999999  556899999999999999999999999999999999999


Q ss_pred             cCCC-ceEEEEeCCCeEEEEEcCCCceeeEe-------------------------------------------------
Q 008467          366 WRNN-VSFATSSTDNMIYVCKIGENRPIKTF-------------------------------------------------  395 (564)
Q Consensus       366 ~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~-------------------------------------------------  395 (564)
                      |.++ ..+++++.|+.|++|++........+                                                 
T Consensus       751 ~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~  830 (1249)
T 3sfz_A          751 FSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSG  830 (1249)
T ss_dssp             ECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCC
T ss_pred             EecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCC
Confidence            9754 57889999999999998655332211                                                 


Q ss_pred             ------cCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCC-------------
Q 008467          396 ------AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGT-------------  456 (564)
Q Consensus       396 ------~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~-------------  456 (564)
                            .+|...|.+++|+|+++++++++.||.|++||+.++..+..+.+|...|.+++|+|++...             
T Consensus       831 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~  910 (1249)
T 3sfz_A          831 LLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE  910 (1249)
T ss_dssp             EEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEE
Confidence                  2778889999999999999999999999999999999999999999999999999987410             


Q ss_pred             ----------------------------------------------------------CCCCCcEEEEEEeCCCeEEEEe
Q 008467          457 ----------------------------------------------------------NNPNQQLILASASFDSTVKLWD  478 (564)
Q Consensus       457 ----------------------------------------------------------~~~~~~~~l~s~s~dg~i~iwd  478 (564)
                                                                                .+|+.. ++++|+.||.|++||
T Consensus       911 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~-~l~~g~~~g~i~i~d  989 (1249)
T 3sfz_A          911 TKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLE-YVAFGDEDGAIKIIE  989 (1249)
T ss_dssp             HHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSS-EEEEEETTSCCEEEE
T ss_pred             ccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCC-EEEEEcCCCCEEEEE
Confidence                                                                      011111 355566666666666


Q ss_pred             CCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEE
Q 008467          479 VELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVC  558 (564)
Q Consensus       479 ~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~  558 (564)
                      +.+++.+..+.+|..+|++++|+|+|++|++|+.||.|++|++.+++.+........+.+++|++++ .+++++.|+.|.
T Consensus       990 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~ 1068 (1249)
T 3sfz_A          990 LPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDS-RLLSWSFDGTVK 1068 (1249)
T ss_dssp             TTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSS-EEEEEESSSEEE
T ss_pred             cCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCC-cEEEEECCCcEE
Confidence            6667777777889999999999999999999999999999999999887666666789999999976 567778999999


Q ss_pred             EEEee
Q 008467          559 VLDFR  563 (564)
Q Consensus       559 v~~~~  563 (564)
                      |||++
T Consensus      1069 vwd~~ 1073 (1249)
T 3sfz_A         1069 VWNVI 1073 (1249)
T ss_dssp             EEETT
T ss_pred             EEECC
Confidence            99974

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.5e-39  Score=325.80  Aligned_cols=293  Identities=19%  Similarity=0.343  Sum_probs=243.4

Q ss_pred             eEccCCccceEEEEECCC----CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC
Q 008467          210 TILEGHTSEVCACAWSPA----GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG  285 (564)
Q Consensus       210 ~~l~~h~~~V~~~~~sp~----~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~  285 (564)
                      .++.+|..+|++++|+|+    ...+++++.++.|++|++.++...          ..+....  ...+...|++++|+|
T Consensus        12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~----------~~~~~~~--~~~~~~~v~~~~~~~   79 (366)
T 3k26_A           12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI----------RLLQSYV--DADADENFYTCAWTY   79 (366)
T ss_dssp             EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE----------EEEEEEE--CSCTTCCEEEEEEEE
T ss_pred             EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE----------Eeeeecc--ccCCCCcEEEEEecc
Confidence            456799999999999994    456777777789999998754321          1111111  122457899999999


Q ss_pred             C----CCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCC-CCCEEEEeeCCCcEEEEECCCcceeEEEeeccc
Q 008467          286 E----GTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG  359 (564)
Q Consensus       286 ~----g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~  359 (564)
                      +    |.+|++|+.||.|++|+.. +.....+.+|..+|.+++|+| ++.+|++|+.|++|++||+++++....+     
T Consensus        80 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----  154 (366)
T 3k26_A           80 DSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF-----  154 (366)
T ss_dssp             CTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEE-----
T ss_pred             CCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEe-----
Confidence            9    7799999999999999975 566778889999999999999 8999999999999999999876533221     


Q ss_pred             CeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeeccc
Q 008467          360 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE  439 (564)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~  439 (564)
                                                       ..+.+|...|.+++|+|++++|++++.||.|++||+++++....+..
T Consensus       155 ---------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  201 (366)
T 3k26_A          155 ---------------------------------GGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKE  201 (366)
T ss_dssp             ---------------------------------CSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHH
T ss_pred             ---------------------------------cccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccce
Confidence                                             11257889999999999999999999999999999988765544443


Q ss_pred             ----------------------------ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe--------
Q 008467          440 ----------------------------HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK--------  483 (564)
Q Consensus       440 ----------------------------~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--------  483 (564)
                                                  |...|.+++|+  +.         +|++++.||.|++||+.++.        
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~---------~l~~~~~d~~i~~wd~~~~~~~~~~~~~  270 (366)
T 3k26_A          202 SYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GD---------LILSKSCENAIVCWKPGKMEDDIDKIKP  270 (366)
T ss_dssp             HHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TT---------EEEEECSSSEEEEEEESSTTCCGGGCCT
T ss_pred             eEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CC---------EEEEEecCCEEEEEeCCCcccccccccc
Confidence                                        88999999998  22         78999999999999988763        


Q ss_pred             ------EEEEEeCCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCe----EEEEEecC---CCEEEEEEccCCCEE
Q 008467          484 ------LLYSLNGHREPVYSLAFSPT--GEYLASGSLDKSMHIWSLKEGK----IVKTYTGN---GGIFEVCWNKEGDKI  548 (564)
Q Consensus       484 ------~~~~~~~h~~~i~~~~~spd--g~~lasgs~dg~i~iw~~~~~~----~~~~~~~~---~~i~~~~w~~~g~~l  548 (564)
                            .+..+..|..+|++++|+|+  |++|++|+.||.|++||+.+++    ....+..+   ..|.+++|+|+|++|
T Consensus       271 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  350 (366)
T 3k26_A          271 SESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSIL  350 (366)
T ss_dssp             TCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEE
T ss_pred             CCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeE
Confidence                  47788899999999999999  9999999999999999999875    44466654   679999999999999


Q ss_pred             EEEEcCCcEEEEEee
Q 008467          549 AACFANHTVCVLDFR  563 (564)
Q Consensus       549 a~~~~~~~v~v~~~~  563 (564)
                      ++|+.||.|.|||+.
T Consensus       351 ~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          351 IAVCDDASIWRWDRL  365 (366)
T ss_dssp             EEEETTSEEEEEEC-
T ss_pred             EEEeCCCEEEEEEec
Confidence            999999999999985

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5e-39  Score=357.80  Aligned_cols=328  Identities=9%  Similarity=0.091  Sum_probs=247.1

Q ss_pred             CccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeec---cccccCCCCeEEEEECCC-CCEE
Q 008467          215 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVK---GRTNEKSKDVTTLDWNGE-GTLL  290 (564)
Q Consensus       215 h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~V~~l~~s~~-g~~l  290 (564)
                      |...|++++|+|++++|++|+.||+|++||+.++...         ........   .....|...|++++|+|+ +..|
T Consensus        97 ~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~---------~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l  167 (902)
T 2oaj_A           97 VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS---------SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTV  167 (902)
T ss_dssp             CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE---------EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEE
T ss_pred             CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc---------cceeccccccccccccCCCCeEEEEEccCCCCEE
Confidence            6789999999999999999999999999999765310         00000000   112346678999999996 5789


Q ss_pred             EEEeCCCeEEEEECCC-ceeEeecCC------------------CCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCccee
Q 008467          291 ATGSYDGQARIWSTNG-DLKCTLSKH------------------KGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK  351 (564)
Q Consensus       291 ~sg~~dg~i~vw~~~~-~~~~~~~~h------------------~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~  351 (564)
                      ++|+.||.| +||... .....+..|                  ...|.+++|+|+|.+|++|+.|++|++||+++++.+
T Consensus       168 ~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~  246 (902)
T 2oaj_A          168 LISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMI  246 (902)
T ss_dssp             EEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEE
T ss_pred             EEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE
Confidence            999999999 999864 344455544                  578999999999999999999999999999887765


Q ss_pred             EEEe-----e-------------cccCeEEEEcC----CC--ceE-----------------------------------
Q 008467          352 QQFE-----F-------------HSGPTLDVDWR----NN--VSF-----------------------------------  372 (564)
Q Consensus       352 ~~~~-----~-------------~~~~~~~~~~~----~~--~~~-----------------------------------  372 (564)
                      ....     .             +..++..+.|.    ++  ..+                                   
T Consensus       247 ~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~  326 (902)
T 2oaj_A          247 MARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKN  326 (902)
T ss_dssp             EEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHH
T ss_pred             EEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhh
Confidence            4211     0             12235555552    11  122                                   


Q ss_pred             -----------------------------------------EEEeCCCeEEEEEcCCCceeeE-----------------
Q 008467          373 -----------------------------------------ATSSTDNMIYVCKIGENRPIKT-----------------  394 (564)
Q Consensus       373 -----------------------------------------~~~~~d~~i~~~~~~~~~~~~~-----------------  394 (564)
                                                               ++.+.|+.|++|++.++.+...                 
T Consensus       327 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~  406 (902)
T 2oaj_A          327 YYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATT  406 (902)
T ss_dssp             HHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEE
T ss_pred             hhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeE
Confidence                                                     2333345566666544322111                 


Q ss_pred             ------------------------ecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeee----e--ecc-----c
Q 008467          395 ------------------------FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV----H--DLR-----E  439 (564)
Q Consensus       395 ------------------------~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~----~--~~~-----~  439 (564)
                                              +.||...+.+++|+|++++||||+.|++||+||+.++...    .  .+.     +
T Consensus       407 ~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~  486 (902)
T 2oaj_A          407 SMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKA  486 (902)
T ss_dssp             EEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCS
T ss_pred             EEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCC
Confidence                                    2334444455566899999999999999999999876421    0  112     7


Q ss_pred             ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-------------------------------------
Q 008467          440 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-------------------------------------  482 (564)
Q Consensus       440 ~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-------------------------------------  482 (564)
                      |...|.+++|+|++.         +||+|+.||+|+|||+.++                                     
T Consensus       487 h~~~V~svafspdg~---------~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  557 (902)
T 2oaj_A          487 KELAVDKISFAAETL---------ELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRA  557 (902)
T ss_dssp             SSCCEEEEEEETTTT---------EEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGC
T ss_pred             CCCceeEEEecCCCC---------eEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccC
Confidence            888999999999986         7999999999999998765                                     


Q ss_pred             --------eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe------c-CCCEEEEEEc-----
Q 008467          483 --------KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT------G-NGGIFEVCWN-----  542 (564)
Q Consensus       483 --------~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~------~-~~~i~~~~w~-----  542 (564)
                              +++..+.+|..+|++|+||||| +||+|+.|++|+|||++++.++....      + ...|++++|+     
T Consensus       558 ~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~  636 (902)
T 2oaj_A          558 PTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYG  636 (902)
T ss_dssp             CTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECT
T ss_pred             CCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecC
Confidence                    3467888999999999999999 99999999999999999888765321      2 3459999999     


Q ss_pred             cCC---CEEEEEEcCCcEEEEEe
Q 008467          543 KEG---DKIAACFANHTVCVLDF  562 (564)
Q Consensus       543 ~~g---~~la~~~~~~~v~v~~~  562 (564)
                      |||   .+|++|+.|++|++||+
T Consensus       637 ~Dg~~~~~l~sgs~D~tv~~wd~  659 (902)
T 2oaj_A          637 DDGYSSILMVCGTDMGEVITYKI  659 (902)
T ss_dssp             TSSSEEEEEEEEETTSEEEEEEE
T ss_pred             CCCCcceEEEEEecCCcEEEEEE
Confidence            886   89999999999999998

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=6.9e-39  Score=312.13  Aligned_cols=254  Identities=25%  Similarity=0.403  Sum_probs=208.5

Q ss_pred             eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC--
Q 008467          209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE--  286 (564)
Q Consensus       209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~--  286 (564)
                      +.++.+|...|++++|+|+|++||||+.|++|+||++.+....      .     +..    ...|...|++++|+++  
T Consensus         2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~------~-----~~~----l~gH~~~V~~v~~s~~~~   66 (297)
T 2pm7_B            2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHK------L-----IDT----LTGHEGPVWRVDWAHPKF   66 (297)
T ss_dssp             CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBC------C-----CEE----ECCCSSCEEEEEECCGGG
T ss_pred             ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcE------E-----EEE----EccccCCeEEEEecCCCc
Confidence            3567899999999999999999999999999999998643110      0     011    2345678999999874  


Q ss_pred             CCEEEEEeCCCeEEEEECCCc---eeEeecCCCCCEEEEEeCCC--CCEEEEeeCCCcEEEEECCCcceeEEEeecccCe
Q 008467          287 GTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT  361 (564)
Q Consensus       287 g~~l~sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~  361 (564)
                      +++|++|+.||+|++|+....   ....+..|..+|.+++|+|+  +.+|++++.|++|++||++++...          
T Consensus        67 g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~----------  136 (297)
T 2pm7_B           67 GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT----------  136 (297)
T ss_dssp             CSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB----------
T ss_pred             CCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce----------
Confidence            899999999999999998643   44567889999999999997  889999999999999998764210          


Q ss_pred             EEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC-------------CCEEEEEeCCCcEEEEeC
Q 008467          362 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-------------GSLLASCSDDVTAKIWNM  428 (564)
Q Consensus       362 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~-------------~~~las~s~dg~i~iwd~  428 (564)
                                                   ....+.+|...|++++|+|+             +++||+|+.|++|+|||+
T Consensus       137 -----------------------------~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~  187 (297)
T 2pm7_B          137 -----------------------------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY  187 (297)
T ss_dssp             -----------------------------CCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEE
T ss_pred             -----------------------------eeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEE
Confidence                                         01235678888899999886             579999999999999999


Q ss_pred             CCCe----eeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe---EEEEE--eCCCCCEEEEE
Q 008467          429 KQDK----YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK---LLYSL--NGHREPVYSLA  499 (564)
Q Consensus       429 ~~~~----~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~---~~~~~--~~h~~~i~~~~  499 (564)
                      +++.    ....+.+|...|.+++|+|++.      ...+|++|+.|++|+|||++.+.   ....+  ..|...|.+++
T Consensus       188 ~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~------~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~  261 (297)
T 2pm7_B          188 NSDAQTYVLESTLEGHSDWVRDVAWSPTVL------LRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRAS  261 (297)
T ss_dssp             ETTTTEEEEEEEECCCSSCEEEEEECCCCS------SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEE
T ss_pred             cCCCceEEEEEEecCCCCceEEEEECCCCC------CceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEE
Confidence            8765    5667889999999999999751      11379999999999999987642   22233  46788999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCC
Q 008467          500 FSPTGEYLASGSLDKSMHIWSLK  522 (564)
Q Consensus       500 ~spdg~~lasgs~dg~i~iw~~~  522 (564)
                      |+|+|++||+|+.||.|+||+..
T Consensus       262 ~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          262 WSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             ECSSSCCEEEEETTSCEEEEEEC
T ss_pred             ECCCCCEEEEEcCCCcEEEEEEC
Confidence            99999999999999999999976

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-38  Score=310.85  Aligned_cols=288  Identities=26%  Similarity=0.361  Sum_probs=249.8

Q ss_pred             ceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC
Q 008467          208 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG  287 (564)
Q Consensus       208 ~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g  287 (564)
                      ....+.+|...|.+++| |++++|++|+.||.|++|++.++..             ....    ..+...|++++|+|++
T Consensus        10 ~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~-------------~~~~----~~~~~~v~~~~~~~~~   71 (313)
T 3odt_A           10 LSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWL-------------GTVV----YTGQGFLNSVCYDSEK   71 (313)
T ss_dssp             EEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEE-------------EEEE----EECSSCEEEEEEETTT
T ss_pred             HHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEE-------------EEEe----ecCCccEEEEEECCCC
Confidence            34678999999999999 9999999999999999999865421             1111    1235789999999999


Q ss_pred             CEEEEEeCCCeEEEEECCC----ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEE
Q 008467          288 TLLATGSYDGQARIWSTNG----DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD  363 (564)
Q Consensus       288 ~~l~sg~~dg~i~vw~~~~----~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~  363 (564)
                      ++|++|+.||.+++|+...    .....+..|..+|.++.|  ++++|++++.|+.|++||  .+.....+..|..++..
T Consensus        72 ~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~  147 (313)
T 3odt_A           72 ELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWD  147 (313)
T ss_dssp             TEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEE
T ss_pred             CEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeE
Confidence            9999999999999999643    345678899999999999  577999999999999999  66777778888899988


Q ss_pred             EEcC--CCceEEEEeCCCeEEEEEcCCCceeeEecC-CCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccc
Q 008467          364 VDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFAG-HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH  440 (564)
Q Consensus       364 ~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~  440 (564)
                      +.|.  +...+++++.|+.|++|+  ...++..+.. |...|.+++|+|++. +++++.||.|++||+++++.+..+..|
T Consensus       148 ~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~  224 (313)
T 3odt_A          148 AKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGH  224 (313)
T ss_dssp             EEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             EEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcC
Confidence            8875  467889999999999999  4566777777 899999999999998 899999999999999999999999999


Q ss_pred             cccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008467          441 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS  520 (564)
Q Consensus       441 ~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~  520 (564)
                      ...|.+++|+|++          .|++++.||.|++||+.+++.+..+..|..+|.+++|+|+|+ +++++.||.|++|+
T Consensus       225 ~~~i~~~~~~~~~----------~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~  293 (313)
T 3odt_A          225 ESFVYCIKLLPNG----------DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFS  293 (313)
T ss_dssp             SSCEEEEEECTTS----------CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEE
T ss_pred             CceEEEEEEecCC----------CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEe
Confidence            9999999999976          278999999999999999999999999999999999999999 56799999999999


Q ss_pred             CCCCeEEEEEe
Q 008467          521 LKEGKIVKTYT  531 (564)
Q Consensus       521 ~~~~~~~~~~~  531 (564)
                      +++++.+....
T Consensus       294 ~~~~~~~~~~~  304 (313)
T 3odt_A          294 QEKSRWASEDE  304 (313)
T ss_dssp             SCGGGCCC---
T ss_pred             CCCCceeehhh
Confidence            99887655443

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.8e-40  Score=383.93  Aligned_cols=342  Identities=21%  Similarity=0.295  Sum_probs=290.9

Q ss_pred             eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCC--------ce-----------EEEEEeec-
Q 008467          209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGP--------LN-----------VLVLKHVK-  268 (564)
Q Consensus       209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~--------~~-----------~~~~~~~~-  268 (564)
                      +..+.+|...|.+++|+|++++|++++.|+.+++|++.+...........        ..           ........ 
T Consensus       875 ~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  954 (1249)
T 3sfz_A          875 VADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTG  954 (1249)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSC
T ss_pred             eeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcc
Confidence            35668999999999999999999999999999999975421111000000        00           00000000 


Q ss_pred             cccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC
Q 008467          269 GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT  347 (564)
Q Consensus       269 ~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~  347 (564)
                      .........|++++|+|+++++++|+.+|.|++|+.. +.....+.+|.++|.+++|+|+|++|++++.|++|++||+.+
T Consensus       955 ~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~ 1034 (1249)
T 3sfz_A          955 QIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT 1034 (1249)
T ss_dssp             CEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTT
T ss_pred             eEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence            0011234579999999999999999999999999975 566677889999999999999999999999999999999999


Q ss_pred             cceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEe
Q 008467          348 EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN  427 (564)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd  427 (564)
                      +.... +..|...+.++.|.++..+++++.|+.|++|++.+++.+..+.+|.+.|.+++|+|++++|++++.|++|++||
T Consensus      1035 ~~~~~-~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd 1113 (1249)
T 3sfz_A         1035 GDYVF-LQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWS 1113 (1249)
T ss_dssp             TEEEC-CBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEEC
T ss_pred             CceEE-EecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence            87663 45677889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEE---------eCCCCCEEEE
Q 008467          428 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL---------NGHREPVYSL  498 (564)
Q Consensus       428 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---------~~h~~~i~~~  498 (564)
                      +.++.++..+.+|...|++++|+|++.         +|++|+.||+|++||+.+++.+..+         .+|..+|+++
T Consensus      1114 ~~~~~~~~~l~~h~~~v~~~~~s~dg~---------~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 1184 (1249)
T 3sfz_A         1114 FDLLSPLHELKGHNGCVRCSAFSLDGI---------LLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDV 1184 (1249)
T ss_dssp             SSSSSCSBCCCCCSSCEEEEEECSSSS---------EEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEE
T ss_pred             CCCcceeeeeccCCCcEEEEEECCCCC---------EEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEE
Confidence            999999999999999999999999885         7999999999999999988876654         5788999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec-CCCEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467          499 AFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVLDF  562 (564)
Q Consensus       499 ~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~-~~~i~~~~w~~~g~~la~~~~~~~v~v~~~  562 (564)
                      +|||||++|++++  |.|++||+.+++.+..+.. ...|.+++|+|+|++|++++.+|.+.||++
T Consensus      1185 ~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A         1185 CFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp             EECTTSSCEEEES--SSEEEBCSSSCBCCCCCCCSSCCCCCCEECSSSCCEEEECTTCCEEEECC
T ss_pred             EECCCCCEEEECC--CeEEEEECCCCceeeeeeccCCcccEEEECCCCCEEEEecCCcEEEEEee
Confidence            9999999999986  8999999999998887764 446889999999999999999999999986

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=9.4e-39  Score=321.01  Aligned_cols=291  Identities=16%  Similarity=0.238  Sum_probs=242.8

Q ss_pred             EccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEE
Q 008467          211 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL  290 (564)
Q Consensus       211 ~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l  290 (564)
                      ++..|..+|++++|+|++++||+|+.|+.|++|++.++..           ......    ..+...|++++|+|++++|
T Consensus         3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~-----------~~~~~~----~~h~~~v~~~~~~~~~~~l   67 (372)
T 1k8k_C            3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-----------VQVHEL----KEHNGQVTGVDWAPDSNRI   67 (372)
T ss_dssp             EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-----------EEEEEE----ECCSSCEEEEEEETTTTEE
T ss_pred             eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE-----------Eeeeee----cCCCCcccEEEEeCCCCEE
Confidence            3456899999999999999999999999999999875420           011111    2356789999999999999


Q ss_pred             EEEeCCCeEEEEECCCce---eEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcC
Q 008467          291 ATGSYDGQARIWSTNGDL---KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR  367 (564)
Q Consensus       291 ~sg~~dg~i~vw~~~~~~---~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  367 (564)
                      ++++.||.|++|+.....   ...+..|...|.+++|+|++++|++++.|+.|++||+.++.....              
T Consensus        68 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~--------------  133 (372)
T 1k8k_C           68 VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWV--------------  133 (372)
T ss_dssp             EEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEE--------------
T ss_pred             EEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCccee--------------
Confidence            999999999999975442   234577999999999999999999999999999999876542110              


Q ss_pred             CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeC------------------C
Q 008467          368 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNM------------------K  429 (564)
Q Consensus       368 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~------------------~  429 (564)
                                             ......+|...|.+++|+|++++|++|+.||.|++||+                  .
T Consensus       134 -----------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~  190 (372)
T 1k8k_C          134 -----------------------CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMP  190 (372)
T ss_dssp             -----------------------EEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCC
T ss_pred             -----------------------eeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccc
Confidence                                   01123568889999999999999999999999999995                  3


Q ss_pred             CCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEE
Q 008467          430 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS  509 (564)
Q Consensus       430 ~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~las  509 (564)
                      .+..+..+..|...|.+++|+|++.         +|++++.||.|++||+++++++..+..|..+|.+++|+|++++|++
T Consensus       191 ~~~~~~~~~~~~~~v~~~~~~~~~~---------~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  261 (372)
T 1k8k_C          191 FGELMFESSSSCGWVHGVCFSANGS---------RVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAA  261 (372)
T ss_dssp             TTCEEEECCCCSSCEEEEEECSSSS---------EEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEE
T ss_pred             hhhheEecCCCCCeEEEEEECCCCC---------EEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEE
Confidence            6778888889999999999999875         7899999999999999999999999999999999999999999998


Q ss_pred             EeCCCcEEEEeCCC--CeE--E------------------------------------EEE--ecCCCEEEEEEc-cCC-
Q 008467          510 GSLDKSMHIWSLKE--GKI--V------------------------------------KTY--TGNGGIFEVCWN-KEG-  545 (564)
Q Consensus       510 gs~dg~i~iw~~~~--~~~--~------------------------------------~~~--~~~~~i~~~~w~-~~g-  545 (564)
                      | .|+.|++|++.+  ++.  +                                    ..+  .+...|.+++|. ++| 
T Consensus       262 ~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~  340 (372)
T 1k8k_C          262 G-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKA  340 (372)
T ss_dssp             E-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTT
T ss_pred             E-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCc
Confidence            8 899999999987  531  0                                    111  124579999977 666 


Q ss_pred             --CEEEEEEcCCcEEEEEee
Q 008467          546 --DKIAACFANHTVCVLDFR  563 (564)
Q Consensus       546 --~~la~~~~~~~v~v~~~~  563 (564)
                        ++|++|+.||.|+|||++
T Consensus       341 ~~~~l~s~~~Dg~i~~W~~~  360 (372)
T 1k8k_C          341 KCSQFCTTGMDGGMSIWDVR  360 (372)
T ss_dssp             SCSEEEEEETTSEEEEEEHH
T ss_pred             ceeeEEEecCCCceEEEEec
Confidence              999999999999999975

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.2e-37  Score=306.93  Aligned_cols=281  Identities=25%  Similarity=0.413  Sum_probs=245.1

Q ss_pred             ccCCCCeEEEEECCC-CCEEEEEeCCCeEEEEECCC------ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEE
Q 008467          272 NEKSKDVTTLDWNGE-GTLLATGSYDGQARIWSTNG------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD  344 (564)
Q Consensus       272 ~~~~~~V~~l~~s~~-g~~l~sg~~dg~i~vw~~~~------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd  344 (564)
                      .+|.+.|++++|+|+ +++|+||+.||+|+||+...      .....+.+|..+|.+++|+|++++|++++.|+.|++|+
T Consensus        35 ~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~  114 (340)
T 4aow_A           35 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWD  114 (340)
T ss_dssp             CCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             CCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEe
Confidence            456789999999997 68999999999999999653      23457889999999999999999999999999999999


Q ss_pred             CCCcceeEEEeecccCeEEEEcC-CCceEEEEeCCCeEEEEEcCCCce-eeEecCCCcceEEEEECCCC--CEEEEEeCC
Q 008467          345 VKTEEWKQQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENRP-IKTFAGHQGEVNCVKWDPTG--SLLASCSDD  420 (564)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~-~~~~~~h~~~i~~v~~~~~~--~~las~s~d  420 (564)
                      ............+........+. ....+++++.|+.+++|+...... ...+.+|...+.+++|++++  .++++++.|
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d  194 (340)
T 4aow_A          115 LTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWD  194 (340)
T ss_dssp             TTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETT
T ss_pred             ecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCC
Confidence            99888777777777776666664 456788999999999999876543 44567899999999998875  578999999


Q ss_pred             CcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEE
Q 008467          421 VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAF  500 (564)
Q Consensus       421 g~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~  500 (564)
                      +.|++||+.+++.+..+.+|...|++++|+|++.         +|++|+.||+|++||+++.+.+..+..+ ..|.+++|
T Consensus       195 ~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~---------~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~  264 (340)
T 4aow_A          195 KLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS---------LCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCF  264 (340)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS---------EEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEE
T ss_pred             CEEEEEECCCCceeeEecCCCCcEEEEEECCCCC---------EEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeec
Confidence            9999999999999999999999999999999875         7999999999999999999999888855 58999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec----------CCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          501 SPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG----------NGGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       501 spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~----------~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      +|++.+++ ++.|+.|++||++++.++..+..          ...|++++|+|+|++||+|+.||.|+|||++
T Consensus       265 ~~~~~~~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~  336 (340)
T 4aow_A          265 SPNRYWLC-AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT  336 (340)
T ss_dssp             CSSSSEEE-EEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred             CCCCceee-ccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence            99987665 55699999999999888777642          3568999999999999999999999999986

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-40  Score=347.20  Aligned_cols=310  Identities=14%  Similarity=0.124  Sum_probs=230.2

Q ss_pred             CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC------CCEEEEEeCCCeEEE
Q 008467          228 GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE------GTLLATGSYDGQARI  301 (564)
Q Consensus       228 ~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~------g~~l~sg~~dg~i~v  301 (564)
                      +++||+|+.|++|+||++.++...         .......    ..+...|.+++|+|+      +.+||+|+.||+|+|
T Consensus       173 ~~~laS~s~D~tI~iWd~~~~~~~---------~~~~~~l----~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~Dgtvrl  239 (524)
T 2j04_B          173 LEMFDKEKHSSCIQIFKMNTSTLH---------CVKVQTI----VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINF  239 (524)
T ss_dssp             ---------CEEEEEEEEETTTCC---------EEEEEEE----EECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEE
T ss_pred             hhhhccCCCCceEEEEEccCCCCC---------ceEEEEE----EecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEE
Confidence            334555678899999998764321         0000001    123467999999997      579999999999999


Q ss_pred             EECCCce------------eEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcc-eeEEEeecccCeEEE--Ec
Q 008467          302 WSTNGDL------------KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE-WKQQFEFHSGPTLDV--DW  366 (564)
Q Consensus       302 w~~~~~~------------~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~--~~  366 (564)
                      |+.....            ...+.+|..+|++++|+++ ..|++|+.||+|++||++++. ....+..|...+.++  .|
T Consensus       240 Wd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~  318 (524)
T 2j04_B          240 LEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAY  318 (524)
T ss_dssp             EECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEEC
T ss_pred             EEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEc
Confidence            9976431            2367789999999999986 489999999999999998764 345678899999998  56


Q ss_pred             CCC--ceEEEEeCCCeEEEEEcCCCceeeEecCCCc--ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccc
Q 008467          367 RNN--VSFATSSTDNMIYVCKIGENRPIKTFAGHQG--EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK  442 (564)
Q Consensus       367 ~~~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~--~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~  442 (564)
                      .++  ..|++++.|++|++|++...+++..+.+|..  .|.+++|+|+++.+++++.|++|++||++++.++..+.+|..
T Consensus       319 s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~  398 (524)
T 2j04_B          319 SDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRET  398 (524)
T ss_dssp             CTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSS
T ss_pred             CCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCC
Confidence            654  5789999999999999998887777877764  588999999999999999999999999999988888899999


Q ss_pred             cEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeC-----CCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 008467          443 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG-----HREPVYSLAFSPTGEYLASGSLDKSMH  517 (564)
Q Consensus       443 ~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----h~~~i~~~~~spdg~~lasgs~dg~i~  517 (564)
                      .|++++|+|++.         +|++|+.||+|++||+..+ .+..++.     +...|++++|+|+|..+.. ..+  +.
T Consensus       399 ~V~sva~Sp~g~---------~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~-~~~--~~  465 (524)
T 2j04_B          399 TITAIGVSRLHP---------MVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYRI-DSS--YE  465 (524)
T ss_dssp             CEEEEECCSSCC---------BCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEEE-CCC--CC
T ss_pred             ceEEEEeCCCCC---------eEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEEc-cCC--ce
Confidence            999999999875         6899999999999998643 2211111     1225789999999996632 222  34


Q ss_pred             EEeCC-CCeEEEEEec-CCCEEEEEEccCCC---EEEEEEcCCcEEEEEeeC
Q 008467          518 IWSLK-EGKIVKTYTG-NGGIFEVCWNKEGD---KIAACFANHTVCVLDFRM  564 (564)
Q Consensus       518 iw~~~-~~~~~~~~~~-~~~i~~~~w~~~g~---~la~~~~~~~v~v~~~~~  564 (564)
                      +|... ++.++.++.+ ...|++|+|||++.   .||+|+.+|.|+||+++.
T Consensus       466 ~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          466 VYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             CCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred             ecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence            44433 4555666655 45799999999964   999999999999999873

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.4e-38  Score=321.25  Aligned_cols=280  Identities=18%  Similarity=0.309  Sum_probs=252.6

Q ss_pred             ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCc-------eeEeecCCCCCEEEEEeCCC----C---CEEEEeeCC
Q 008467          272 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD-------LKCTLSKHKGPIFSLKWNKK----G---DYLLTGSCD  337 (564)
Q Consensus       272 ~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~-------~~~~~~~h~~~V~~l~~~~~----~---~~l~s~s~D  337 (564)
                      ..|...|++++|+|  ++|++|+.||.|++|+....       ....+.+|..+|.+++|+|+    +   .+|++++.|
T Consensus        13 ~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~d   90 (397)
T 1sq9_A           13 KAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFS   90 (397)
T ss_dssp             SCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETT
T ss_pred             hhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCC
Confidence            35678999999999  89999999999999998654       46778899999999999999    9   999999999


Q ss_pred             CcEEEEECCCcce-----eEEEeec-----ccCeEEEEcC----CC-ce-EEEEeCCCeEEEEEcCC------Cceee--
Q 008467          338 KTAIVWDVKTEEW-----KQQFEFH-----SGPTLDVDWR----NN-VS-FATSSTDNMIYVCKIGE------NRPIK--  393 (564)
Q Consensus       338 ~~v~iwd~~~~~~-----~~~~~~~-----~~~~~~~~~~----~~-~~-~~~~~~d~~i~~~~~~~------~~~~~--  393 (564)
                      ++|++||+.++..     ...+..+     ...+.++.|.    ++ .. +++++.|+.|++|++..      ...+.  
T Consensus        91 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  170 (397)
T 1sq9_A           91 GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWS  170 (397)
T ss_dssp             SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCC
T ss_pred             CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeecc
Confidence            9999999998886     7777777     5889999998    44 45 88899999999999988      66665  


Q ss_pred             ---Eec-------CCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeeccc---c---cccEEEEEEccCCCCCC
Q 008467          394 ---TFA-------GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE---H---SKEIYTIRWSPTGSGTN  457 (564)
Q Consensus       394 ---~~~-------~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~---~---~~~i~~i~~~p~~~~~~  457 (564)
                         .+.       .|...|.+++|+|++ +|++|+.||.|++||+++++.+..+..   |   ...|.+++|+|++.   
T Consensus       171 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~---  246 (397)
T 1sq9_A          171 PTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS---  246 (397)
T ss_dssp             CEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT---
T ss_pred             CcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCC---
Confidence               774       488999999999999 999999999999999999999999988   8   99999999999875   


Q ss_pred             CCCCcEEEEEEeCC---CeEEEEeCCCCeEEEEEeC-------------CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 008467          458 NPNQQLILASASFD---STVKLWDVELGKLLYSLNG-------------HREPVYSLAFSPTGEYLASGSLDKSMHIWSL  521 (564)
Q Consensus       458 ~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~-------------h~~~i~~~~~spdg~~lasgs~dg~i~iw~~  521 (564)
                            +|++++.|   |.|++||+++++.+..+.+             |..+|.+++|+|++++|++|+.||.|++||+
T Consensus       247 ------~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  320 (397)
T 1sq9_A          247 ------LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV  320 (397)
T ss_dssp             ------EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred             ------EEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence                  78899999   9999999999999999998             9999999999999999999999999999999


Q ss_pred             CCCeEEEEEe------c----------------CCCEEEEEEccCC----------CEEEEEEcCCcEEEEEee
Q 008467          522 KEGKIVKTYT------G----------------NGGIFEVCWNKEG----------DKIAACFANHTVCVLDFR  563 (564)
Q Consensus       522 ~~~~~~~~~~------~----------------~~~i~~~~w~~~g----------~~la~~~~~~~v~v~~~~  563 (564)
                      .+++.+..+.      .                ...|.+++|+|+|          ++|++|+.||.|.|||++
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~  394 (397)
T 1sq9_A          321 KTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA  394 (397)
T ss_dssp             TTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred             CCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence            9999999988      4                4679999999999          799999999999999986

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=9.3e-39  Score=318.99  Aligned_cols=292  Identities=20%  Similarity=0.344  Sum_probs=240.6

Q ss_pred             eEccCCccceEEEEECCCCC-EEEEEEC---CCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC
Q 008467          210 TILEGHTSEVCACAWSPAGS-LLASGSG---DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG  285 (564)
Q Consensus       210 ~~l~~h~~~V~~~~~sp~~~-~lasgs~---D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~  285 (564)
                      .++.+|...|++++|+|++. ++++|+.   |+.|+||++.++...           ....     ..+...|++++|+|
T Consensus        12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~-----------~~~~-----~~~~~~v~~~~~~~   75 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLK-----------LLRE-----IEKAKPIKCGTFGA   75 (357)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEE-----------EEEE-----EEESSCEEEEECTT
T ss_pred             hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccc-----------ceee-----ecccCcEEEEEEcC
Confidence            46688999999999999986 5556665   999999999765311           0111     12357899999999


Q ss_pred             C---CCEEEEEeCCCeEEEEECCC-c-eeEeecCCCCCEEEEE------eCCCCCEEEEeeCCCcEEEEECCCcc-eeEE
Q 008467          286 E---GTLLATGSYDGQARIWSTNG-D-LKCTLSKHKGPIFSLK------WNKKGDYLLTGSCDKTAIVWDVKTEE-WKQQ  353 (564)
Q Consensus       286 ~---g~~l~sg~~dg~i~vw~~~~-~-~~~~~~~h~~~V~~l~------~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~  353 (564)
                      +   |.+|++|+.||.|++|+... . ....+.+|..+|.++.      |+|++++|++++.|++|++||++++. ....
T Consensus        76 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~  155 (357)
T 3i2n_A           76 TSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVAN  155 (357)
T ss_dssp             CCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEE
T ss_pred             CCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCccee
Confidence            8   79999999999999999764 3 5678889999999995      57899999999999999999999886 6666


Q ss_pred             Eeeccc----CeEEEE----c-CCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECC---CCCEEEEEeCCC
Q 008467          354 FEFHSG----PTLDVD----W-RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP---TGSLLASCSDDV  421 (564)
Q Consensus       354 ~~~~~~----~~~~~~----~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~---~~~~las~s~dg  421 (564)
                      +..+.+    .+.++.    | .+...+++++.|+.|++|++...+... ...|...|.+++|+|   ++.+|++|+.||
T Consensus       156 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg  234 (357)
T 3i2n_A          156 MEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDISMNKLVATSLEG  234 (357)
T ss_dssp             ECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSSSCCEEEEEESTT
T ss_pred             ccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCCCCCCCCEEEEECCCC
Confidence            665544    667776    4 355678889999999999999887644 467889999999999   999999999999


Q ss_pred             cEEEEeCCCCeeeeecc-----cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC--------------
Q 008467          422 TAKIWNMKQDKYVHDLR-----EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG--------------  482 (564)
Q Consensus       422 ~i~iwd~~~~~~~~~~~-----~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~--------------  482 (564)
                      .|++||++++.....+.     .|...|++++|+|++.        .+|++|+.||.|++||++.+              
T Consensus       235 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~  306 (357)
T 3i2n_A          235 KFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNR--------ELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMG  306 (357)
T ss_dssp             EEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEE--------EEEEEEETTSEEEEEEEECCSCC--CCTTSCCCC
T ss_pred             eEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCC--------cEEEEEeCCCcEEEeecCCCcccccccCCCCccc
Confidence            99999998876655544     8999999999999763        37999999999999998753              


Q ss_pred             -----eEEEEEeCCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCeE
Q 008467          483 -----KLLYSLNGHREPVYSLAFSPTGEYLA-SGSLDKSMHIWSLKEGKI  526 (564)
Q Consensus       483 -----~~~~~~~~h~~~i~~~~~spdg~~la-sgs~dg~i~iw~~~~~~~  526 (564)
                           +.+..+.+|..+|++++|+|+|++|+ +|+.||.|+||++.+.++
T Consensus       307 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          307 VAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             CCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred             cccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence                 46778899999999999999999998 899999999999987654

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=4.7e-38  Score=312.45  Aligned_cols=244  Identities=23%  Similarity=0.489  Sum_probs=220.4

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCccee
Q 008467          273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK  351 (564)
Q Consensus       273 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~  351 (564)
                      .|...|++++|+|++++|++|+.||.|++|+.. +.....+..|...|.+++|+|++++|++|+.|+.+++||+.+....
T Consensus        53 gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~  132 (340)
T 1got_B           53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGN  132 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBS
T ss_pred             CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCc
Confidence            356789999999999999999999999999965 5666778899999999999999999999999999999998764210


Q ss_pred             EEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 008467          352 QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD  431 (564)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~  431 (564)
                                                           ......+.+|.+.|.++.|++++. +++++.|++|++||+.++
T Consensus       133 -------------------------------------~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~  174 (340)
T 1got_B          133 -------------------------------------VRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETG  174 (340)
T ss_dssp             -------------------------------------CEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTT
T ss_pred             -------------------------------------ceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCC
Confidence                                                 112345778999999999998775 789999999999999999


Q ss_pred             eeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe
Q 008467          432 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGS  511 (564)
Q Consensus       432 ~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs  511 (564)
                      ..+..+.+|...|.+++|+|++.         +|++|+.|++|++||+++++++..+.+|..+|++++|+|+|++|++|+
T Consensus       175 ~~~~~~~~h~~~v~~~~~~~~~~---------~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s  245 (340)
T 1got_B          175 QQTTTFTGHTGDVMSLSLAPDTR---------LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS  245 (340)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSS---------EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             cEEEEEcCCCCceEEEEECCCCC---------EEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEc
Confidence            99999999999999999999875         799999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEeCCCCeEEEEEecC---CCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          512 LDKSMHIWSLKEGKIVKTYTGN---GGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       512 ~dg~i~iw~~~~~~~~~~~~~~---~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      .||+|++||+++++.+..+...   .+|.+++|+|+|++|++|+.|+.|.|||++
T Consensus       246 ~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~  300 (340)
T 1got_B          246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL  300 (340)
T ss_dssp             TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             CCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcc
Confidence            9999999999999888887643   369999999999999999999999999974

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=3.6e-37  Score=304.71  Aligned_cols=285  Identities=18%  Similarity=0.340  Sum_probs=249.0

Q ss_pred             ccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEE
Q 008467          212 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA  291 (564)
Q Consensus       212 l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~  291 (564)
                      ..+|...|.+++|+|++++|++++ ||.+++|++.++.....     ..  .+.     ...+...|++++|+|++++|+
T Consensus        47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~-----~~--~~~-----~~~~~~~v~~~~~~~~~~~l~  113 (337)
T 1gxr_A           47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSP-----VS--QLD-----CLNRDNYIRSCKLLPDGCTLI  113 (337)
T ss_dssp             EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSC-----SE--EEE-----CSCTTSBEEEEEECTTSSEEE
T ss_pred             eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceee-----ee--ccc-----ccCCCCcEEEEEEcCCCCEEE
Confidence            347999999999999999999998 99999999976542111     10  110     113467899999999999999


Q ss_pred             EEeCCCeEEEEECCCc---eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCC
Q 008467          292 TGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN  368 (564)
Q Consensus       292 sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  368 (564)
                      +++.||.|++|+....   ....+..|...|.+++|+|++++|++++.|+.|++||+++++....+..|...+..+.|.+
T Consensus       114 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~  193 (337)
T 1gxr_A          114 VGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN  193 (337)
T ss_dssp             EEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred             EEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECC
Confidence            9999999999998653   4556788999999999999999999999999999999999999988988999999999975


Q ss_pred             C-ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEE
Q 008467          369 N-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI  447 (564)
Q Consensus       369 ~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i  447 (564)
                      + ..+++++.|+.|++|++...+++..+. |...+.+++|+|++++|++++.|+.|++||+.+.... .+..|...|.++
T Consensus       194 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~  271 (337)
T 1gxr_A          194 DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSL  271 (337)
T ss_dssp             TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEE
T ss_pred             CCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEE
Confidence            4 578889999999999999988877764 7788999999999999999999999999999987654 567899999999


Q ss_pred             EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 008467          448 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL  521 (564)
Q Consensus       448 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~  521 (564)
                      +|+|++.         +|++++.||.|++||+.+++.+... .|..+|.+++|+|++++|++++.||.|++|++
T Consensus       272 ~~~~~~~---------~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          272 KFAYCGK---------WFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EECTTSS---------EEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EECCCCC---------EEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence            9999875         7899999999999999999887555 47889999999999999999999999999986

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=3.3e-39  Score=332.02  Aligned_cols=286  Identities=18%  Similarity=0.290  Sum_probs=230.8

Q ss_pred             EccCCccceEEEEECCC-CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC-CCC
Q 008467          211 ILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGT  288 (564)
Q Consensus       211 ~l~~h~~~V~~~~~sp~-~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~  288 (564)
                      ...+|...|+|++|||. +++||+|+.||.|+|||+.++...           ...    ...+|...|++|+|+| ++.
T Consensus       114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~-----------~~~----~~~gH~~~V~~l~f~p~~~~  178 (435)
T 4e54_B          114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP-----------TFI----KGIGAGGSITGLKFNPLNTN  178 (435)
T ss_dssp             EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC-----------EEE----CCCSSSCCCCEEEECSSCTT
T ss_pred             cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce-----------eEE----EccCCCCCEEEEEEeCCCCC
Confidence            45678899999999994 689999999999999998765321           011    1234678899999998 789


Q ss_pred             EEEEEeCCCeEEEEECCCceeEeecC---CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEE
Q 008467          289 LLATGSYDGQARIWSTNGDLKCTLSK---HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD  365 (564)
Q Consensus       289 ~l~sg~~dg~i~vw~~~~~~~~~~~~---h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~  365 (564)
                      +|++|+.||+|++||..+.....+..   +...+.+++|+|++.+|++|+.||+|++||++..                 
T Consensus       179 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-----------------  241 (435)
T 4e54_B          179 QFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-----------------  241 (435)
T ss_dssp             EEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-----------------
T ss_pred             EEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-----------------
Confidence            99999999999999998765544432   3456789999999999999999999999998642                 


Q ss_pred             cCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeeeee---ccccc
Q 008467          366 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQDKYVHD---LREHS  441 (564)
Q Consensus       366 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~-~las~s~dg~i~iwd~~~~~~~~~---~~~~~  441 (564)
                                               .+..+.+|...|++++|+|++. +|++|+.|++|+|||+++.+....   ..+|.
T Consensus       242 -------------------------~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~  296 (435)
T 4e54_B          242 -------------------------ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHR  296 (435)
T ss_dssp             -------------------------BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCS
T ss_pred             -------------------------eeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeecc
Confidence                                     2234678999999999999986 788999999999999987664433   35789


Q ss_pred             ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCC------CEEEEEEcCCCCEEEEEeC---
Q 008467          442 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHRE------PVYSLAFSPTGEYLASGSL---  512 (564)
Q Consensus       442 ~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~------~i~~~~~spdg~~lasgs~---  512 (564)
                      ..|++++|+|++.         +|++|+.||+|+|||+.++.+...+..|..      .+..+.|+|++.++++++.   
T Consensus       297 ~~v~~~~~spdg~---------~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  367 (435)
T 4e54_B          297 HPVNAACFSPDGA---------RLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDP  367 (435)
T ss_dssp             SCEEECCBCTTSS---------EEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCT
T ss_pred             ccccceeECCCCC---------eeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCC
Confidence            9999999999875         799999999999999999888877766542      2345677888777776642   


Q ss_pred             ---------CCcEEEEeCCCCeEEEEEec--CCCEEEE-EEccCCCEEEEEEcCCcEEEEEee
Q 008467          513 ---------DKSMHIWSLKEGKIVKTYTG--NGGIFEV-CWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       513 ---------dg~i~iw~~~~~~~~~~~~~--~~~i~~~-~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                               ++.|++||..+|+++..+..  ...|.++ +|+|+|++||+|+ |+.|.|||++
T Consensus       368 ~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~  429 (435)
T 4e54_B          368 NFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQ  429 (435)
T ss_dssp             TSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC
T ss_pred             CeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECC
Confidence                     35799999999999887743  3457776 6999999999885 7799999975

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=6.6e-38  Score=306.25  Aligned_cols=249  Identities=19%  Similarity=0.333  Sum_probs=225.2

Q ss_pred             ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCC-ceEEEEeCCCeEEEEE
Q 008467          307 DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCK  385 (564)
Q Consensus       307 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~  385 (564)
                      .+..++.+|.+.|.+++|+|++++|++|+.|++|++||+.++.....+..|..++..+.|.++ ..+++++.|+.|++|+
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd   83 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN   83 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred             eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence            345678899999999999999999999999999999999999999999999999999988654 5788999999999999


Q ss_pred             cCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-eeeeecccccccEEEEEEccCCCCCCCCCCcEE
Q 008467          386 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD-KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLI  464 (564)
Q Consensus       386 ~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~-~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~  464 (564)
                      +.+++.+..+.+|.+.|++++|+|++++|++|+.|++|++||++++ .....+.+|...|.+++|+|...        .+
T Consensus        84 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~--------~~  155 (304)
T 2ynn_A           84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDP--------ST  155 (304)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCT--------TE
T ss_pred             CCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCC--------CE
Confidence            9999999999999999999999999999999999999999999877 45567889999999999998532        27


Q ss_pred             EEEEeCCCeEEEEeCCCCeEEEEEe-CCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCeEEEEEecC-CCEEEEE
Q 008467          465 LASASFDSTVKLWDVELGKLLYSLN-GHREPVYSLAFSP--TGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVC  540 (564)
Q Consensus       465 l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~i~~~~~sp--dg~~lasgs~dg~i~iw~~~~~~~~~~~~~~-~~i~~~~  540 (564)
                      |++|+.|++|++||++.+.....+. +|...|..++|+|  ++.+|++|+.|++|++||+++++++.++.++ ..|..++
T Consensus       156 l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~  235 (304)
T 2ynn_A          156 FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAV  235 (304)
T ss_dssp             EEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred             EEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEE
Confidence            9999999999999998877665554 5667899999987  7889999999999999999999999999875 4689999


Q ss_pred             EccCCCEEEEEEcCCcEEEEEee
Q 008467          541 WNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       541 w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      |+|+++.|++|+.|+.|+|||++
T Consensus       236 ~~p~~~~l~s~s~Dg~i~iWd~~  258 (304)
T 2ynn_A          236 FHPTLPIIISGSEDGTLKIWNSS  258 (304)
T ss_dssp             ECSSSSEEEEEETTSCEEEEETT
T ss_pred             ECCCCCEEEEEcCCCeEEEEECC
Confidence            99999999999999999999975

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.3e-38  Score=328.62  Aligned_cols=302  Identities=14%  Similarity=0.273  Sum_probs=232.4

Q ss_pred             CCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccc--------cCCCCeEEEEECC
Q 008467          214 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTN--------EKSKDVTTLDWNG  285 (564)
Q Consensus       214 ~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~V~~l~~s~  285 (564)
                      .|.+.|++++|+|+|++||+|+.||.|+||++.++...........  .......++..        .....|++++|+|
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~--~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~  103 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEY--NVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP  103 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCE--EEEEEEECCCCEEEGGGTEEECCCCCEEEECC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccce--eEecccccccccccccccccccCceEEEEEcC
Confidence            3678999999999999999999999999999987542211111111  11122222110        0016799999999


Q ss_pred             CC--CEEEEEeCCCeEEEEECCCcee-----------------------------------------EeecCCCCCEEEE
Q 008467          286 EG--TLLATGSYDGQARIWSTNGDLK-----------------------------------------CTLSKHKGPIFSL  322 (564)
Q Consensus       286 ~g--~~l~sg~~dg~i~vw~~~~~~~-----------------------------------------~~~~~h~~~V~~l  322 (564)
                      ++  .+|++++.||.|++|+......                                         ....+|..+|.++
T Consensus       104 ~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  183 (447)
T 3dw8_B          104 QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI  183 (447)
T ss_dssp             CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred             CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence            98  8999999999999999653211                                         1246899999999


Q ss_pred             EeCCCCCEEEEeeCCCcEEEEECCCc-ceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcc
Q 008467          323 KWNKKGDYLLTGSCDKTAIVWDVKTE-EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGE  401 (564)
Q Consensus       323 ~~~~~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~  401 (564)
                      +|+|++++|++| .|++|++||+++. .....                              .++.    ...+.+|...
T Consensus       184 ~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~------------------------------~~~~----~~~~~~~~~~  228 (447)
T 3dw8_B          184 SINSDYETYLSA-DDLRINLWHLEITDRSFNI------------------------------VDIK----PANMEELTEV  228 (447)
T ss_dssp             EECTTSSEEEEE-CSSEEEEEETTEEEEEEEE------------------------------EECC----CSSGGGCCCC
T ss_pred             EEcCCCCEEEEe-CCCeEEEEECCCCCceeee------------------------------eecc----cccccccCcc
Confidence            999999999998 7999999999742 21111                              1111    1136689999


Q ss_pred             eEEEEECCCC-CEEEEEeCCCcEEEEeCCCCee----eeecccccc------------cEEEEEEccCCCCCCCCCCcEE
Q 008467          402 VNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKY----VHDLREHSK------------EIYTIRWSPTGSGTNNPNQQLI  464 (564)
Q Consensus       402 i~~v~~~~~~-~~las~s~dg~i~iwd~~~~~~----~~~~~~~~~------------~i~~i~~~p~~~~~~~~~~~~~  464 (564)
                      |++++|+|++ ++|++|+.||+|++||++++..    +..+..|..            .|.+++|+|++.         +
T Consensus       229 v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~---------~  299 (447)
T 3dw8_B          229 ITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR---------Y  299 (447)
T ss_dssp             EEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSS---------E
T ss_pred             eEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCC---------E
Confidence            9999999998 9999999999999999998876    677777775            899999999875         7


Q ss_pred             EEEEeCCCeEEEEeCCC-CeEEEEEeCCCCC---------------EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 008467          465 LASASFDSTVKLWDVEL-GKLLYSLNGHREP---------------VYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK  528 (564)
Q Consensus       465 l~s~s~dg~i~iwd~~~-~~~~~~~~~h~~~---------------i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~  528 (564)
                      |++++. +.|++||+++ ++++..+.+|...               +..++|+|+|++|++|+.||.|++||+.+++.+.
T Consensus       300 l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~  378 (447)
T 3dw8_B          300 MMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT  378 (447)
T ss_dssp             EEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE
T ss_pred             EEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee
Confidence            888888 9999999997 8888888888632               3359999999999999999999999999988764


Q ss_pred             EEe---------------------------------cCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          529 TYT---------------------------------GNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       529 ~~~---------------------------------~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      ...                                 ....|..++|+|+|+.||+++.|+ +.+|.-+
T Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~  445 (447)
T 3dw8_B          379 LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK  445 (447)
T ss_dssp             EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred             eeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence            221                                 123578899999999999998775 8888754

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2.1e-37  Score=315.00  Aligned_cols=342  Identities=17%  Similarity=0.226  Sum_probs=243.3

Q ss_pred             ceeEccCCccceEEEEECC-CCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC-
Q 008467          208 DVTILEGHTSEVCACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-  285 (564)
Q Consensus       208 ~~~~l~~h~~~V~~~~~sp-~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-  285 (564)
                      ...++.+|.+.|++++|+| ++++||+|+.||.|++|++.++.........    ............+...|++++|+| 
T Consensus        35 ~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~  110 (408)
T 4a11_B           35 DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCK----AVCSIGRDHPDVHRYSVETVQWYPH  110 (408)
T ss_dssp             TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEEC----EEEEECTTCTTCCSSCEEEEEECTT
T ss_pred             ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecc----ccccccccccccCCCcEEEEEEccC
Confidence            3467789999999999999 9999999999999999999876533211100    001111122234678899999999 


Q ss_pred             CCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCC---CEEEEeeCCCcEEEEECCCcceeEEEeecccCeE
Q 008467          286 EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKG---DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL  362 (564)
Q Consensus       286 ~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~---~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~  362 (564)
                      ++.+|++++.||.|++|+...........+...+.++.|++.+   .++++++.|+.|++||++++.....+..|...+.
T Consensus       111 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~  190 (408)
T 4a11_B          111 DTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEIL  190 (408)
T ss_dssp             CTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEE
T ss_pred             CCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEE
Confidence            7889999999999999998765444444588899999999854   4999999999999999999999999999999999


Q ss_pred             EEEcCCCc--eEEEEeCCCeEEEEEcCCCc-eeeEe---------------cCCCcceEEEEECCCCCEEEEEeCCCcEE
Q 008467          363 DVDWRNNV--SFATSSTDNMIYVCKIGENR-PIKTF---------------AGHQGEVNCVKWDPTGSLLASCSDDVTAK  424 (564)
Q Consensus       363 ~~~~~~~~--~~~~~~~d~~i~~~~~~~~~-~~~~~---------------~~h~~~i~~v~~~~~~~~las~s~dg~i~  424 (564)
                      ++.|.++.  .+++++.|+.|++|++.... ++..+               .+|...|.+++|+|++++|++++.||.|+
T Consensus       191 ~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  270 (408)
T 4a11_B          191 AVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMR  270 (408)
T ss_dssp             EEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             EEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEE
Confidence            99997664  48899999999999997654 33333               57889999999999999999999999999


Q ss_pred             EEeCCCCeeeeecccccc----cEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEE
Q 008467          425 IWNMKQDKYVHDLREHSK----EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAF  500 (564)
Q Consensus       425 iwd~~~~~~~~~~~~~~~----~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~  500 (564)
                      +||+.+++....+..+..    ......+....        ...++.++.|+.|++||+.+++.+..+.+|..+|++++|
T Consensus       271 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~  342 (408)
T 4a11_B          271 LWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGC--------SSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVF  342 (408)
T ss_dssp             EEETTTCCBCCCCCCCCCCCCSSCCCCEECCSS--------SSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred             EEECCCCccceeccccccccccccceeEEecCC--------CceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEE
Confidence            999998876544332211    00111111111        113566778999999999999999999999999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccC-CCEEEEEEcCCcEEEEEee
Q 008467          501 SPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKE-GDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       501 spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~-g~~la~~~~~~~v~v~~~~  563 (564)
                      +|+|++|++|+.||.|++|++.+++.+........  ...+++. ....+.+..++.+.||+..
T Consensus       343 s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~W~~~  404 (408)
T 4a11_B          343 QSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTT--KSQLNPAFEDAWSSSDEEGGTSAWSHP  404 (408)
T ss_dssp             ETTTTEEEEEETTSCEEEEEECC-----------------------------------------
T ss_pred             cCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEe--ccccccccceeecccCccCceeecCCc
Confidence            99999999999999999999999887765433221  2234443 2344556678899999754

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.3e-37  Score=306.42  Aligned_cols=246  Identities=26%  Similarity=0.403  Sum_probs=216.4

Q ss_pred             ccCCCCeEEEEECCCC-CEEEEEeCCCeEEEEECCC------ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEE
Q 008467          272 NEKSKDVTTLDWNGEG-TLLATGSYDGQARIWSTNG------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD  344 (564)
Q Consensus       272 ~~~~~~V~~l~~s~~g-~~l~sg~~dg~i~vw~~~~------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd  344 (564)
                      ..|...|++++|+|++ ++|++|+.||.|++|+..+      .....+.+|..+|.+++|+|++.+|++|+.|++|++||
T Consensus        14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd   93 (319)
T 3frx_A           14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWD   93 (319)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence            4567899999999965 8999999999999998642      23557889999999999999999999999999999999


Q ss_pred             CCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEE
Q 008467          345 VKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK  424 (564)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~  424 (564)
                      +.+++.                                         +..+.+|...|.+++|+|++.+|++|+.|++|+
T Consensus        94 ~~~~~~-----------------------------------------~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~  132 (319)
T 3frx_A           94 VATGET-----------------------------------------YQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK  132 (319)
T ss_dssp             TTTTEE-----------------------------------------EEEEECCSSCEEEEEECTTSCEEEEEETTSCEE
T ss_pred             CCCCCe-----------------------------------------eEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence            987643                                         345678999999999999999999999999999


Q ss_pred             EEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCC
Q 008467          425 IWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG  504 (564)
Q Consensus       425 iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg  504 (564)
                      +||++. .++..+.+|...|.++.|.|.....   ....+|++++.|++|++||+++++....+.+|..+|++++|+|+|
T Consensus       133 vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~~~---~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g  208 (319)
T 3frx_A          133 VWTIKG-QCLATLLGHNDWVSQVRVVPNEKAD---DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG  208 (319)
T ss_dssp             EEETTS-CEEEEECCCSSCEEEEEECCC---------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTS
T ss_pred             EEECCC-CeEEEEeccCCcEEEEEEccCCCCC---CCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCC
Confidence            999974 5677888999999999999865321   122378999999999999999999999999999999999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          505 EYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       505 ~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      ++||+|+.||.|+|||+.+++.+..+.....+.+++|+|+|.+||++..+ .+.||++.
T Consensus       209 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~  266 (319)
T 3frx_A          209 TLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATAT-GIKVFSLD  266 (319)
T ss_dssp             SEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETT-EEEEEEET
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeC
Confidence            99999999999999999999999999888899999999999999998765 58898864

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=5.5e-38  Score=312.57  Aligned_cols=257  Identities=29%  Similarity=0.518  Sum_probs=207.2

Q ss_pred             EccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEE
Q 008467          211 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL  290 (564)
Q Consensus       211 ~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l  290 (564)
                      ...+|...|.+++|+|++++||+|+.|++++||++..+..           ......    ..|...|++++|+|++++|
T Consensus        56 ~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~-----------~~~~~~----~~h~~~v~~v~~sp~~~~l  120 (345)
T 3fm0_A           56 LSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDF-----------ECVTTL----EGHENEVKSVAWAPSGNLL  120 (345)
T ss_dssp             ECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-E-----------EEEEEE----CCCSSCEEEEEECTTSSEE
T ss_pred             eccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCe-----------EEEEEc----cCCCCCceEEEEeCCCCEE
Confidence            4478999999999999999999999999999999865321           111122    2456789999999999999


Q ss_pred             EEEeCCCeEEEEECCCc----eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEc
Q 008467          291 ATGSYDGQARIWSTNGD----LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW  366 (564)
Q Consensus       291 ~sg~~dg~i~vw~~~~~----~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  366 (564)
                      ++|+.||.|++|+....    ....+..|...|.+++|+|++.+|++|+.|++|++||+.++.+.               
T Consensus       121 ~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~---------------  185 (345)
T 3fm0_A          121 ATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWV---------------  185 (345)
T ss_dssp             EEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEE---------------
T ss_pred             EEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEE---------------
Confidence            99999999999997532    34567899999999999999999999999999999998664321               


Q ss_pred             CCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCC---------------
Q 008467          367 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD---------------  431 (564)
Q Consensus       367 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~---------------  431 (564)
                                              ++..+.+|...|.+++|+|++++|++|+.|++|+||+....               
T Consensus       186 ------------------------~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~  241 (345)
T 3fm0_A          186 ------------------------CCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSW  241 (345)
T ss_dssp             ------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEE
T ss_pred             ------------------------EEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCcc
Confidence                                    23456789999999999999999999999999999996321               


Q ss_pred             eeeeeccc-ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe--------E-EEEEeCCCCCEEEEEEc
Q 008467          432 KYVHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK--------L-LYSLNGHREPVYSLAFS  501 (564)
Q Consensus       432 ~~~~~~~~-~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--------~-~~~~~~h~~~i~~~~~s  501 (564)
                      .++..+.+ |...|++++|+|++.         .|++++.|+.|++|+...+.        . .....+|...|++++|+
T Consensus       242 ~~~~~~~~~h~~~v~~v~~~~~~~---------~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~  312 (345)
T 3fm0_A          242 KCICTLSGFHSRTIYDIAWCQLTG---------ALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWN  312 (345)
T ss_dssp             EEEEEECSSCSSCEEEEEECTTTC---------CEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEEC
T ss_pred             ceeEEecCCCCCcEEEEEEecCCC---------EEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEe
Confidence            23334444 888999999999875         68999999999999986542        1 22335899999999999


Q ss_pred             CCC-CEEEEEeCCCcEEEEeCCCCeEEEEE
Q 008467          502 PTG-EYLASGSLDKSMHIWSLKEGKIVKTY  530 (564)
Q Consensus       502 pdg-~~lasgs~dg~i~iw~~~~~~~~~~~  530 (564)
                      |++ .+||+||.||+|++|++.+++.+..+
T Consensus       313 p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~  342 (345)
T 3fm0_A          313 PKEPGLLASCSDDGEVAFWKYQRPEGLHHH  342 (345)
T ss_dssp             SSSTTEEEEEETTSCEEEEEECC-------
T ss_pred             CCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence            998 59999999999999999987765443

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1e-37  Score=303.88  Aligned_cols=252  Identities=24%  Similarity=0.436  Sum_probs=208.0

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC---ceeEeecCCCCCEEEEEeCCC--CCEEEEeeCCCcEEEEECCC
Q 008467          273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG---DLKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKT  347 (564)
Q Consensus       273 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~---~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~  347 (564)
                      .|...|++++|+|+|++|++|+.||.|+||+..+   .....+.+|.++|++++|++.  +++|++|+.|++|++||+.+
T Consensus         7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~   86 (297)
T 2pm7_B            7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN   86 (297)
T ss_dssp             SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSS
T ss_pred             CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCC
Confidence            4567899999999999999999999999999853   456788999999999999863  89999999999999999876


Q ss_pred             cceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC--CCEEEEEeCCCcEEE
Q 008467          348 EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKI  425 (564)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~--~~~las~s~dg~i~i  425 (564)
                      +.+.                                       .+..+.+|...|++++|+|+  +.+|++|+.|++|++
T Consensus        87 ~~~~---------------------------------------~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~  127 (297)
T 2pm7_B           87 GRWS---------------------------------------QIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSV  127 (297)
T ss_dssp             SCBC---------------------------------------CCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEE
T ss_pred             CceE---------------------------------------EEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEE
Confidence            5311                                       22345679999999999998  899999999999999


Q ss_pred             EeCCCCee--eeecccccccEEEEEEccCCCCCC----CCCCcEEEEEEeCCCeEEEEeCCCCe----EEEEEeCCCCCE
Q 008467          426 WNMKQDKY--VHDLREHSKEIYTIRWSPTGSGTN----NPNQQLILASASFDSTVKLWDVELGK----LLYSLNGHREPV  495 (564)
Q Consensus       426 wd~~~~~~--~~~~~~~~~~i~~i~~~p~~~~~~----~~~~~~~l~s~s~dg~i~iwd~~~~~----~~~~~~~h~~~i  495 (564)
                      ||+++...  ...+.+|...|.+++|+|.+....    .+....+|++|+.|++|++||+++++    ....+.+|..+|
T Consensus       128 wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V  207 (297)
T 2pm7_B          128 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV  207 (297)
T ss_dssp             EEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE
T ss_pred             EEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCce
Confidence            99987532  356678999999999999742100    00112379999999999999998765    667889999999


Q ss_pred             EEEEEcCCC---CEEEEEeCCCcEEEEeCCCCe--E-EEEE---ecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          496 YSLAFSPTG---EYLASGSLDKSMHIWSLKEGK--I-VKTY---TGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       496 ~~~~~spdg---~~lasgs~dg~i~iw~~~~~~--~-~~~~---~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      .+++|+|++   .+||+|+.|++|+||++.++.  . ...+   .....|++++|+|+|++||+++.|+.|.||+.+
T Consensus       208 ~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          208 RDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             EEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             EEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            999999995   899999999999999997643  1 1222   124569999999999999999999999999875

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.7e-37  Score=315.85  Aligned_cols=284  Identities=20%  Similarity=0.394  Sum_probs=239.2

Q ss_pred             EccCCccce--EEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467          211 ILEGHTSEV--CACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  288 (564)
Q Consensus       211 ~l~~h~~~V--~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  288 (564)
                      ...+|...+  .+++|++  ..+++++.|+.|++|++.++...             ....   ..+...|++++|+|+++
T Consensus        86 ~~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~-------------~~~~---~~~~~~v~~v~~s~~~~  147 (401)
T 4aez_A           86 DAPGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVS-------------ALAE---TDESTYVASVKWSHDGS  147 (401)
T ss_dssp             ECTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEE-------------EEEE---CCTTCCEEEEEECTTSS
T ss_pred             eCCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEe-------------Eeee---cCCCCCEEEEEECCCCC
Confidence            345777664  4466664  56888999999999999775421             1111   12467899999999999


Q ss_pred             EEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcC
Q 008467          289 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR  367 (564)
Q Consensus       289 ~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  367 (564)
                      +|++|+.||.|++|+.. +.....+.+|...|.+++|+  +++|++|+.|++|++||++...                  
T Consensus       148 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~------------------  207 (401)
T 4aez_A          148 FLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIAN------------------  207 (401)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSS------------------
T ss_pred             EEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCc------------------
Confidence            99999999999999975 56677888999999999994  5799999999999999987432                  


Q ss_pred             CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEE
Q 008467          368 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI  447 (564)
Q Consensus       368 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i  447 (564)
                                            ..+..+.+|.+.|.+++|+|++++|++|+.|+.|++||++++..+..+..|...|.++
T Consensus       208 ----------------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~  265 (401)
T 4aez_A          208 ----------------------HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAV  265 (401)
T ss_dssp             ----------------------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEE
T ss_pred             ----------------------ceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEE
Confidence                                  2234567899999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCCCCCCCCcEEEEEEe--CCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEE--eCCCcEEEEeCCC
Q 008467          448 RWSPTGSGTNNPNQQLILASAS--FDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASG--SLDKSMHIWSLKE  523 (564)
Q Consensus       448 ~~~p~~~~~~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasg--s~dg~i~iw~~~~  523 (564)
                      +|+|++.        .++++|+  .|+.|++||+.+++.+..+. +...|.+++|+|+|++|+++  +.||.|++|++.+
T Consensus       266 ~~~p~~~--------~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~  336 (401)
T 4aez_A          266 AWCPWQS--------NLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS  336 (401)
T ss_dssp             EECTTST--------TEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEET
T ss_pred             EECCCCC--------CEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCC
Confidence            9999764        2677766  89999999999999988886 56789999999999999995  4899999999999


Q ss_pred             CeEEEEE--ec-CCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          524 GKIVKTY--TG-NGGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       524 ~~~~~~~--~~-~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      ++.....  .+ ...|.+++|+|+|++|++++.||.|.|||+.
T Consensus       337 ~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~  379 (401)
T 4aez_A          337 SGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVY  379 (401)
T ss_dssp             TEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECC
T ss_pred             ccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence            8766553  33 4579999999999999999999999999985

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=4.4e-38  Score=314.62  Aligned_cols=252  Identities=21%  Similarity=0.289  Sum_probs=206.6

Q ss_pred             EccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEE
Q 008467          211 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL  290 (564)
Q Consensus       211 ~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l  290 (564)
                      ...+|...|.+++|+|++.+ ++++.||+|+|||+.++......             ......|...|++++|+|+|++|
T Consensus        89 ~~~~~~~~V~~~~~s~d~~~-l~~s~dg~v~lWd~~~~~~~~~~-------------~~~~~~h~~~V~~v~~spdg~~l  154 (357)
T 4g56_B           89 AGVQTEAGVTDVAWVSEKGI-LVASDSGAVELWEILEKESLLVN-------------KFAKYEHDDIVKTLSVFSDGTQA  154 (357)
T ss_dssp             EEEECSSCEEEEEEETTTEE-EEEETTSCEEEC--------CCC-------------CEEECCCSSCEEEEEECSSSSEE
T ss_pred             ccCCCCCCEEEEEEcCCCCE-EEEECCCEEEEeeccccceeEEE-------------eeccCCCCCCEEEEEECCCCCEE
Confidence            34578899999999999865 56789999999999775422100             00112456789999999999999


Q ss_pred             EEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCC
Q 008467          291 ATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN  368 (564)
Q Consensus       291 ~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  368 (564)
                      ++|+.||.|++||.. +.....+.+|...|.+++|+|++. .+++++.|++|++||+++++....+              
T Consensus       155 ~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~--------------  220 (357)
T 4g56_B          155 VSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI--------------  220 (357)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC--------------
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeee--------------
Confidence            999999999999976 566778899999999999999885 7899999999999999876533211              


Q ss_pred             CceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEE
Q 008467          369 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI  447 (564)
Q Consensus       369 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~-~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i  447 (564)
                                               .+..|...+.+++|+|+ +.+|++|+.|+.|++||+++++++..+..|...|+++
T Consensus       221 -------------------------~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l  275 (357)
T 4g56_B          221 -------------------------DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGL  275 (357)
T ss_dssp             -------------------------CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEE
T ss_pred             -------------------------eeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEE
Confidence                                     23346678999999997 4689999999999999999999999999999999999


Q ss_pred             EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCC
Q 008467          448 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSP-TGEYLASGSLDKSMHIWSLKEG  524 (564)
Q Consensus       448 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp-dg~~lasgs~dg~i~iw~~~~~  524 (564)
                      +|+|++.        .+|++|+.|++|+|||+++++++..+ +|..+|++|+||| |+++||+||.||+|++|++.+.
T Consensus       276 ~~sp~~~--------~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          276 AYSYHSS--------PFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             EECSSSS--------CCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred             EEcCCCC--------CEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence            9999864        26899999999999999998877654 7999999999999 8999999999999999999653

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.7e-39  Score=327.52  Aligned_cols=287  Identities=16%  Similarity=0.186  Sum_probs=226.4

Q ss_pred             ccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEE
Q 008467          212 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA  291 (564)
Q Consensus       212 l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~  291 (564)
                      +..|..+|++++|+|++++||+|+.|+.|+||++.++..               ........|...|++++|+|++++|+
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~---------------~~~~~~~~h~~~v~~~~~s~~~~~l~   71 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW---------------KHARTFSDHDKIVTCVDWAPKSNRIV   71 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE---------------EECCCBCCCSSCEEEEEECTTTCCEE
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce---------------EEEEEEecCCceEEEEEEeCCCCEEE
Confidence            444678999999999999999999999999999875410               01112234567899999999999999


Q ss_pred             EEeCCCeEEEEECCCc----eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcC
Q 008467          292 TGSYDGQARIWSTNGD----LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR  367 (564)
Q Consensus       292 sg~~dg~i~vw~~~~~----~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  367 (564)
                      +|+.||.|++|+....    ....+..|..+|.+++|+|++++|++++.|++|++||++++...                
T Consensus        72 s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~----------------  135 (377)
T 3dwl_C           72 TCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDW----------------  135 (377)
T ss_dssp             EEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----C----------------
T ss_pred             EEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccc----------------
Confidence            9999999999997654    35667889999999999999999999999999999998765310                


Q ss_pred             CCceEEEEeCCCeEEEEEcCCCceeeEecC-CCcceEEEEECCCCCEEEEEeCCCcEEEEeCC-----------------
Q 008467          368 NNVSFATSSTDNMIYVCKIGENRPIKTFAG-HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK-----------------  429 (564)
Q Consensus       368 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~-----------------  429 (564)
                                            .....+.+ |...|.+++|+|++++|++|+.|++|++||+.                 
T Consensus       136 ----------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  193 (377)
T 3dwl_C          136 ----------------------WVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRL  193 (377)
T ss_dssp             ----------------------CCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCC
T ss_pred             ----------------------eeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCcccccccccc
Confidence                                  11234555 89999999999999999999999999999985                 


Q ss_pred             -CCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE----EEEEeCCCCCEEEEEEcCCC
Q 008467          430 -QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL----LYSLNGHREPVYSLAFSPTG  504 (564)
Q Consensus       430 -~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~h~~~i~~~~~spdg  504 (564)
                       .+.++..+ .|...|.+++|+|++.         +|++++.||+|++||+.+++.    +..+.+|..+|.+++|+|+|
T Consensus       194 ~~~~~~~~~-~~~~~v~~~~~sp~~~---------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  263 (377)
T 3dwl_C          194 PFNTVCAEY-PSGGWVHAVGFSPSGN---------ALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANES  263 (377)
T ss_dssp             CEEEEEECC-CCSSSEEEEEECTTSS---------CEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETT
T ss_pred             chhhhhhcc-cCCceEEEEEECCCCC---------EEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCC
Confidence             35566667 8999999999999875         689999999999999998876    77889999999999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCCe--E-------------------------E---------EEEe-----------------
Q 008467          505 EYLASGSLDKSMHIWSLKEGK--I-------------------------V---------KTYT-----------------  531 (564)
Q Consensus       505 ~~lasgs~dg~i~iw~~~~~~--~-------------------------~---------~~~~-----------------  531 (564)
                      ++|++|+.++.+ +|+...+.  .                         .         ..+.                 
T Consensus       264 ~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  342 (377)
T 3dwl_C          264 AIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTV  342 (377)
T ss_dssp             EEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSS
T ss_pred             CEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCcc
Confidence            999999877766 66654211  0                         0         1111                 


Q ss_pred             cCCCEEEEEEccCC-C---EEEEEEcCCcEEEEEe
Q 008467          532 GNGGIFEVCWNKEG-D---KIAACFANHTVCVLDF  562 (564)
Q Consensus       532 ~~~~i~~~~w~~~g-~---~la~~~~~~~v~v~~~  562 (564)
                      +...|.+++|.+.+ .   .|++|+.||.|+|||+
T Consensus       343 H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          343 HQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             CSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             ccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence            33568899876543 3   6999999999999986

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.5e-37  Score=298.89  Aligned_cols=273  Identities=23%  Similarity=0.316  Sum_probs=244.1

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCc---
Q 008467          273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE---  348 (564)
Q Consensus       273 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~---  348 (564)
                      .|...|++++| +++.+|++|+.||.|++|+... .....+..|..+|.+++|+|++++|++++.|+.+++|++...   
T Consensus        16 ~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~   94 (313)
T 3odt_A           16 GHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGE   94 (313)
T ss_dssp             CCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTS
T ss_pred             CCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCC
Confidence            45788999999 9999999999999999999754 456678889999999999999999999999999999998654   


Q ss_pred             ceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECC-CCCEEEEEeCCCcEEEEe
Q 008467          349 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWN  427 (564)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~-~~~~las~s~dg~i~iwd  427 (564)
                      .....+..|...+.++.| +...+++++.|+.|++|+  ...++..+.+|...+.+++|+| +++++++++.||.|++||
T Consensus        95 ~~~~~~~~~~~~i~~~~~-~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d  171 (313)
T 3odt_A           95 DPLYTLIGHQGNVCSLSF-QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ  171 (313)
T ss_dssp             CC-CEECCCSSCEEEEEE-ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             CcccchhhcccCEEEEEe-cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe
Confidence            456667788889999999 566889999999999999  6778888999999999999988 899999999999999999


Q ss_pred             CCCCeeeeeccc-ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCE
Q 008467          428 MKQDKYVHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY  506 (564)
Q Consensus       428 ~~~~~~~~~~~~-~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~  506 (564)
                        .......+.. |...+.+++|+|++          .+++++.||.|++||+++++.+..+.+|..+|++++|+|+| .
T Consensus       172 --~~~~~~~~~~~~~~~i~~~~~~~~~----------~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~  238 (313)
T 3odt_A          172 --NDKVIKTFSGIHNDVVRHLAVVDDG----------HFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-D  238 (313)
T ss_dssp             --TTEEEEEECSSCSSCEEEEEEEETT----------EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-C
T ss_pred             --cCceEEEEeccCcccEEEEEEcCCC----------eEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-C
Confidence              4555666666 88999999999976          38899999999999999999999999999999999999999 5


Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEEEecCC-CEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          507 LASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       507 lasgs~dg~i~iw~~~~~~~~~~~~~~~-~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      |++|+.||.|++||+.+++++..+..+. .|..++|+|+|+ +++++.|+.|.|||++
T Consensus       239 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~  295 (313)
T 3odt_A          239 IVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQE  295 (313)
T ss_dssp             EEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESC
T ss_pred             EEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCC
Confidence            8899999999999999999998887654 799999999998 5568899999999976

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7e-38  Score=322.35  Aligned_cols=309  Identities=14%  Similarity=0.216  Sum_probs=249.2

Q ss_pred             EECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC-CCCEEEEEeCCCeEEE
Q 008467          223 AWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGTLLATGSYDGQARI  301 (564)
Q Consensus       223 ~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~l~sg~~dg~i~v  301 (564)
                      .|+|++..+++++      .|+.. +.             .+...   ...|...|++++|+| ++.+|++|+.||.|+|
T Consensus        34 ~f~~~~~~~~~~~------~w~~~-g~-------------~~~~~---~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~v   90 (437)
T 3gre_A           34 EFGPIQEIVRSPN------MGNLR-GK-------------LIATL---MENEPNSITSSAVSPGETPYLITGSDQGVIKI   90 (437)
T ss_dssp             GGCCCCCCCCCCC------GGGCC-CC-------------EEEEE---CTTTTSCEEEEEEECSSSCEEEEEETTSEEEE
T ss_pred             hcCCccccccccc------ccccc-ce-------------EEeee---ccCCCCceEEEEECCCCCCEEEEecCCceEEE
Confidence            4788888877765      37643 21             11122   123567899999999 9999999999999999


Q ss_pred             EECCC---c--e--eEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECC---CcceeEEEeec------------cc
Q 008467          302 WSTNG---D--L--KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK---TEEWKQQFEFH------------SG  359 (564)
Q Consensus       302 w~~~~---~--~--~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~---~~~~~~~~~~~------------~~  359 (564)
                      |+...   .  .  ...+ .|.++|.+++|+|++++|++|+.|++|++||+.   ++.....+..+            ..
T Consensus        91 wd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  169 (437)
T 3gre_A           91 WNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNE  169 (437)
T ss_dssp             EEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCC
T ss_pred             eECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCccccc
Confidence            99643   1  1  2222 599999999999999999999999999999994   55544433322            22


Q ss_pred             CeEEEE--c-CCCceEEEEeCCCeEEEEEcCCCceeeEecC--CCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeee
Q 008467          360 PTLDVD--W-RNNVSFATSSTDNMIYVCKIGENRPIKTFAG--HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV  434 (564)
Q Consensus       360 ~~~~~~--~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~--h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~  434 (564)
                      .+.++.  + .+...+++++.|+.|++|++...+++..+.+  |.+.|++++|+|++++|++|+.||+|++||+++++++
T Consensus       170 ~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  249 (437)
T 3gre_A          170 YAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLI  249 (437)
T ss_dssp             CEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEE
T ss_pred             CceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEE
Confidence            333333  2 2356789999999999999999999999998  8999999999999999999999999999999999998


Q ss_pred             eecc-cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCC----------------------
Q 008467          435 HDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH----------------------  491 (564)
Q Consensus       435 ~~~~-~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h----------------------  491 (564)
                      ..+. .|...|.+++|+|...    ++ ..+|++|+.||+|++||+++++++..+.+|                      
T Consensus       250 ~~~~~~~~~~v~~~~~~~~~s----~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  324 (437)
T 3gre_A          250 RSWSFGDHAPITHVEVCQFYG----KN-SVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFC  324 (437)
T ss_dssp             EEEBCTTCEEEEEEEECTTTC----TT-EEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCC
T ss_pred             EEEecCCCCceEEEEeccccC----CC-ccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceec
Confidence            8876 7888999999987532    22 247899999999999999999998887654                      


Q ss_pred             ----CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe------------------------------------
Q 008467          492 ----REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT------------------------------------  531 (564)
Q Consensus       492 ----~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~------------------------------------  531 (564)
                          ..+|++++|+ ++++|++|+.||.|++||+.+++....+.                                    
T Consensus       325 ~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (437)
T 3gre_A          325 GIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDS  403 (437)
T ss_dssp             CCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC----------
T ss_pred             ccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcc
Confidence                4457888998 77999999999999999999988666554                                    


Q ss_pred             --cCCCEEEEEEccC--CCEEEEEEcCCcEEEEE
Q 008467          532 --GNGGIFEVCWNKE--GDKIAACFANHTVCVLD  561 (564)
Q Consensus       532 --~~~~i~~~~w~~~--g~~la~~~~~~~v~v~~  561 (564)
                        ....|++++|+++  +.+|++|+.||.|.||+
T Consensus       404 ~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          404 LYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             ---CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             cccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence              3456899999998  77999999999999995

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-37  Score=307.73  Aligned_cols=251  Identities=27%  Similarity=0.505  Sum_probs=197.7

Q ss_pred             CCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEE
Q 008467          214 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG  293 (564)
Q Consensus       214 ~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg  293 (564)
                      +|...|.+++|+|++++||+|+.|++|+||++.......      .........    ..|...|++++|+|+|++|++|
T Consensus        56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~------~~~~~~~~~----~~h~~~V~~v~~sp~g~~las~  125 (330)
T 2hes_X           56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRT------FEMDLLAII----EGHENEVKGVAWSNDGYYLATC  125 (330)
T ss_dssp             CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------------CCCEEEEEE----C----CEEEEEECTTSCEEEEE
T ss_pred             CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCcc------ccceeEEEE----cCCCCcEEEEEECCCCCEEEEE
Confidence            399999999999999999999999999999985421100      000111112    2456789999999999999999


Q ss_pred             eCCCeEEEEECC-C----ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCC
Q 008467          294 SYDGQARIWSTN-G----DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN  368 (564)
Q Consensus       294 ~~dg~i~vw~~~-~----~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  368 (564)
                      +.||.|++|+.. .    .....+.+|..+|.+++|+|++.+|++|+.|++|++||+.++..                  
T Consensus       126 s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~------------------  187 (330)
T 2hes_X          126 SRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDW------------------  187 (330)
T ss_dssp             ETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE------------------
T ss_pred             eCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCe------------------
Confidence            999999999983 2    24567889999999999999999999999999999999765321                  


Q ss_pred             CceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC--CCEEEEEeCCCcEEEEeCCCC--------eeeeecc
Q 008467          369 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKIWNMKQD--------KYVHDLR  438 (564)
Q Consensus       369 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~--~~~las~s~dg~i~iwd~~~~--------~~~~~~~  438 (564)
                                           .++..+.+|.+.|.+++|+|+  +.+|++|+.|++|++||+...        .+...+.
T Consensus       188 ---------------------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~  246 (330)
T 2hes_X          188 ---------------------ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILP  246 (330)
T ss_dssp             ---------------------EEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECC
T ss_pred             ---------------------eEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecc
Confidence                                 234567899999999999998  778999999999999998654        3444555


Q ss_pred             c-ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe--EEEE-EeCCCC-CEEEEEEcC--CCCEEEEEe
Q 008467          439 E-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK--LLYS-LNGHRE-PVYSLAFSP--TGEYLASGS  511 (564)
Q Consensus       439 ~-~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~-~~~h~~-~i~~~~~sp--dg~~lasgs  511 (564)
                      . |...|++++|++.+          +|++++.||+|+|||..++.  .+.. +.+|.. .|++++|+|  ++++||+|+
T Consensus       247 ~~h~~~v~~v~~s~~~----------~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s  316 (330)
T 2hes_X          247 DVHKRQVYNVAWGFNG----------LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGG  316 (330)
T ss_dssp             SCCSSCEEEEEECTTS----------CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEE
T ss_pred             cccccceEEEEEcCCC----------EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEec
Confidence            4 88999999998654          58999999999999998774  3333 357876 899999999  799999999


Q ss_pred             CCCcEEEEeCCC
Q 008467          512 LDKSMHIWSLKE  523 (564)
Q Consensus       512 ~dg~i~iw~~~~  523 (564)
                      .||+|+||++++
T Consensus       317 ~Dg~v~~W~~~~  328 (330)
T 2hes_X          317 DDGIVNFWSLEK  328 (330)
T ss_dssp             TTSEEEEEEC--
T ss_pred             CCCcEEEEEecc
Confidence            999999999864

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=3.1e-38  Score=310.30  Aligned_cols=255  Identities=24%  Similarity=0.366  Sum_probs=201.3

Q ss_pred             eEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC--CC
Q 008467          210 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--EG  287 (564)
Q Consensus       210 ~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~--~g  287 (564)
                      .++.+|...|++++|+|+|++||||+.|++|+|||+.++..           ..+..+    ..|...|++++|++  ++
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~-----------~~~~~l----~gH~~~V~~v~~~~~~~~   71 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ-----------ILIADL----RGHEGPVWQVAWAHPMYG   71 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE-----------EEEEEE----ECCSSCEEEEEECCGGGS
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc-----------EEEEEE----cCCCccEEEEEeCCCCCC
Confidence            45679999999999999999999999999999999865421           111122    24567899999986  48


Q ss_pred             CEEEEEeCCCeEEEEECCCc---eeEeecCCCCCEEEEEeCCC--CCEEEEeeCCCcEEEEECCCcceeEEEeecccCeE
Q 008467          288 TLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL  362 (564)
Q Consensus       288 ~~l~sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~  362 (564)
                      ++|++|+.|++|++|+....   ....+.+|..+|.+++|+|+  +.+|++|+.|++|++||++++....          
T Consensus        72 ~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~----------  141 (316)
T 3bg1_A           72 NILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWE----------  141 (316)
T ss_dssp             SCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEE----------
T ss_pred             CEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcc----------
Confidence            99999999999999997642   44567899999999999998  7899999999999999987642100          


Q ss_pred             EEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC-----------------CCEEEEEeCCCcEEE
Q 008467          363 DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-----------------GSLLASCSDDVTAKI  425 (564)
Q Consensus       363 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~-----------------~~~las~s~dg~i~i  425 (564)
                                                  ....+.+|...|.+++|+|+                 +++|++|+.|++|++
T Consensus       142 ----------------------------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~l  193 (316)
T 3bg1_A          142 ----------------------------VKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKL  193 (316)
T ss_dssp             ----------------------------ECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCE
T ss_pred             ----------------------------eeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEE
Confidence                                        11234567777778888876                 478999999999999


Q ss_pred             EeCCCC---eeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC---e-EEEEEeCCCCCEEEE
Q 008467          426 WNMKQD---KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG---K-LLYSLNGHREPVYSL  498 (564)
Q Consensus       426 wd~~~~---~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~---~-~~~~~~~h~~~i~~~  498 (564)
                      ||++..   .++..+.+|...|.+++|+|++..     ...+|++|+.|++|+|||+...   . ....+..|..+|+++
T Consensus       194 Wd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~-----~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v  268 (316)
T 3bg1_A          194 WKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGL-----PTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHV  268 (316)
T ss_dssp             EEECTTSCEEEEECCBCCSSCEEEEECCCCSSC-----SCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEE
T ss_pred             EEeCCCCccceeeecccCCCceEEEEecCCCCC-----CCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEE
Confidence            999754   467788999999999999997621     0127999999999999998762   1 123345688999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCC
Q 008467          499 AFSPTGEYLASGSLDKSMHIWSLK  522 (564)
Q Consensus       499 ~~spdg~~lasgs~dg~i~iw~~~  522 (564)
                      +|+|+|++||+|+.||+|+||+..
T Consensus       269 ~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          269 SWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             EECTTTCCEEEEESSSCEEEEEEC
T ss_pred             EEcCCCCEEEEEcCCCeEEEEEEC
Confidence            999999999999999999999975

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=7.5e-38  Score=313.84  Aligned_cols=289  Identities=13%  Similarity=0.130  Sum_probs=222.1

Q ss_pred             cceEEEEECCCCCEEEEEECCC-------cEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE
Q 008467          217 SEVCACAWSPAGSLLASGSGDS-------TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL  289 (564)
Q Consensus       217 ~~V~~~~~sp~~~~lasgs~D~-------~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~  289 (564)
                      .+|++++|+|++++||+||.|.       .|++|++..+......     .......  .....+...|.+++++  +..
T Consensus        15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~-----~~~~~~~--~~l~~~~~~v~s~~~~--~~~   85 (365)
T 4h5i_A           15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKE-----QFHILSE--FALEDNDDSPTAIDAS--KGI   85 (365)
T ss_dssp             SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHH-----HEEEEEE--EECCTTSCCCCEEEEE--TTE
T ss_pred             CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceee-----eeeeeeE--EEccCCCCceEEEEeC--CCE
Confidence            4799999999999999998754       4999998754321100     0000010  1122344567777764  456


Q ss_pred             EEEE-----------eCCCeEEEEECCCc--eeE---e-----ecCCCCCEEEEEeCCCCCEEEE--eeCCCcEEEEECC
Q 008467          290 LATG-----------SYDGQARIWSTNGD--LKC---T-----LSKHKGPIFSLKWNKKGDYLLT--GSCDKTAIVWDVK  346 (564)
Q Consensus       290 l~sg-----------~~dg~i~vw~~~~~--~~~---~-----~~~h~~~V~~l~~~~~~~~l~s--~s~D~~v~iwd~~  346 (564)
                      +++|           +.|+.+|+|+....  ...   .     ...+...+.+++|+|+|+++++  ++.|++|+|||+.
T Consensus        86 ~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~  165 (365)
T 4h5i_A           86 ILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPS  165 (365)
T ss_dssp             EEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETT
T ss_pred             EEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECC
Confidence            6655           45778999985421  111   1     1234456899999999999764  4578999999999


Q ss_pred             CcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceee--EecCCCcceEEEEECCCCCEEEEEeCCC---
Q 008467          347 TEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIK--TFAGHQGEVNCVKWDPTGSLLASCSDDV---  421 (564)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~--~~~~h~~~i~~v~~~~~~~~las~s~dg---  421 (564)
                      +++.+..+. |...+.++.|.++..+++++.++.+.+|+...+..+.  ...+|...|.+++|+|+++++++++.|+   
T Consensus       166 ~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~  244 (365)
T 4h5i_A          166 DLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKG  244 (365)
T ss_dssp             TTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCC
T ss_pred             CCcEEEEeC-CCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcce
Confidence            999888775 5677999999877666555556777777777665543  4567899999999999999999999887   


Q ss_pred             -cEEEEeCCCCee----eeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEE-eCCCCCE
Q 008467          422 -TAKIWNMKQDKY----VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-NGHREPV  495 (564)
Q Consensus       422 -~i~iwd~~~~~~----~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~h~~~i  495 (564)
                       .+++|++.....    ...+..|...|++++|+|++.         +||+|+.|++|+|||+++++++.++ .+|..+|
T Consensus       245 ~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~---------~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V  315 (365)
T 4h5i_A          245 IVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGE---------LAVLASNDNSIALVKLKDLSMSKIFKQAHSFAI  315 (365)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSC---------EEEEEETTSCEEEEETTTTEEEEEETTSSSSCE
T ss_pred             eEEeecccccceecceeeeeecCCCCCeEeEEECCCCC---------ceEEEcCCCEEEEEECCCCcEEEEecCcccCCE
Confidence             688899876543    345678999999999999986         8999999999999999999999885 7899999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 008467          496 YSLAFSPTGEYLASGSLDKSMHIWSLKEG  524 (564)
Q Consensus       496 ~~~~~spdg~~lasgs~dg~i~iw~~~~~  524 (564)
                      ++|+|||||++||+||.|++|+||++...
T Consensus       316 ~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          316 TEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            99999999999999999999999999643

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=4.7e-37  Score=305.00  Aligned_cols=282  Identities=14%  Similarity=0.120  Sum_probs=244.1

Q ss_pred             EccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC-E
Q 008467          211 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT-L  289 (564)
Q Consensus       211 ~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~  289 (564)
                      +..+|...|++++|+|++++|++|+.|+.|+||++.++...          ......    ..+...|++++|+|+++ +
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~----------~~~~~~----~~~~~~v~~~~~~~~~~~~   71 (342)
T 1yfq_A            6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN----------VDLLQS----LRYKHPLLCCNFIDNTDLQ   71 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE----------EEEEEE----EECSSCEEEEEEEESSSEE
T ss_pred             cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcc----------ccceee----eecCCceEEEEECCCCCcE
Confidence            45689999999999999999999999999999998764310          011111    13467899999999999 9


Q ss_pred             EEEEeCCCeEEEEEC-CCceeEeecC--CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC---------cceeEEEeec
Q 008467          290 LATGSYDGQARIWST-NGDLKCTLSK--HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT---------EEWKQQFEFH  357 (564)
Q Consensus       290 l~sg~~dg~i~vw~~-~~~~~~~~~~--h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~---------~~~~~~~~~~  357 (564)
                      |++|+.||.|++|+. .......+..  |..+|.+++|+| +.+|++++.|+.|++||+++         ++....+. +
T Consensus        72 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~  149 (342)
T 1yfq_A           72 IYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-V  149 (342)
T ss_dssp             EEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-S
T ss_pred             EEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-e
Confidence            999999999999999 8777788888  999999999999 99999999999999999987         66666555 7


Q ss_pred             ccCeEEEEcCCCceEEEEeCCCeEEEEEcCC-Cc--eeeEecCCCcceEEEEECC-CCCEEEEEeCCCcEEEEeCCCC--
Q 008467          358 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGE-NR--PIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQD--  431 (564)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~--~~~~~~~h~~~i~~v~~~~-~~~~las~s~dg~i~iwd~~~~--  431 (564)
                      ...+.++.|.++. +++++.++.|++|++.. ..  .......|...|.+++|+| ++++|++++.||.|++|+++..  
T Consensus       150 ~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~  228 (342)
T 1yfq_A          150 KNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD  228 (342)
T ss_dssp             CCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCC
T ss_pred             CCceEEEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCc
Confidence            7788999998777 89999999999999987 43  3345567888999999999 9999999999999999999876  


Q ss_pred             ----eeeeecccccc---------cEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCC-CCCEEE
Q 008467          432 ----KYVHDLREHSK---------EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH-REPVYS  497 (564)
Q Consensus       432 ----~~~~~~~~~~~---------~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h-~~~i~~  497 (564)
                          .....+..|..         .|.+++|+|++.         +|++++.||.|++||+.+++.+..+.+| ..+|++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~---------~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~  299 (342)
T 1yfq_A          229 DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK---------FLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVK  299 (342)
T ss_dssp             STTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC---------CEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEE
T ss_pred             ccccccceeeecccccccccccceeEEEEEEcCCCC---------EEEEecCCceEEEEcCccHhHhhhhhcccCCCceE
Confidence                66777777755         999999999875         6899999999999999999999999998 999999


Q ss_pred             EEEcCCCCEEEEEeCCCc-EEEEe
Q 008467          498 LAFSPTGEYLASGSLDKS-MHIWS  520 (564)
Q Consensus       498 ~~~spdg~~lasgs~dg~-i~iw~  520 (564)
                      ++  |+|++|++|+.||. .+.|.
T Consensus       300 ~~--~~~~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          300 IA--CSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             EE--ECSSEEEEEEECTHHHHCSS
T ss_pred             ec--CCCCeEEEEecCCccccccc
Confidence            99  99999999999998 55554

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.5e-36  Score=337.40  Aligned_cols=324  Identities=20%  Similarity=0.279  Sum_probs=271.5

Q ss_pred             ceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC
Q 008467          208 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG  287 (564)
Q Consensus       208 ~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g  287 (564)
                      .+..+.+|...|.+++|+|++++|++|+.||.|++|++.++...             ...    ..+...|++++|+|++
T Consensus        47 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~-------------~~~----~~~~~~v~~~~~s~~~  109 (814)
T 3mkq_A           47 EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV-------------VDF----EAHPDYIRSIAVHPTK  109 (814)
T ss_dssp             EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEE-------------EEE----ECCSSCEEEEEECSSS
T ss_pred             eEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE-------------EEE----ecCCCCEEEEEEeCCC
Confidence            34567789999999999999999999999999999999865421             111    2346789999999999


Q ss_pred             CEEEEEeCCCeEEEEECCC--ceeEeecCCCCCEEEEEeCC-CCCEEEEeeCCCcEEEEECCCcceeEEEeecc-cCeEE
Q 008467          288 TLLATGSYDGQARIWSTNG--DLKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS-GPTLD  363 (564)
Q Consensus       288 ~~l~sg~~dg~i~vw~~~~--~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~~~~~  363 (564)
                      .+|++|+.||.|++|+...  .....+.+|..+|.+++|+| ++..|++++.|++|++||+.++.....+..+. ..+..
T Consensus       110 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~  189 (814)
T 3mkq_A          110 PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY  189 (814)
T ss_dssp             SEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCE
T ss_pred             CEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEE
Confidence            9999999999999999764  45667889999999999999 88899999999999999998887777666554 67777


Q ss_pred             EEcC---CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccc
Q 008467          364 VDWR---NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH  440 (564)
Q Consensus       364 ~~~~---~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~  440 (564)
                      +.|.   +...+++++.|+.|++|++..+.++..+.+|.+.|.+++|+|++++|++|+.||.|++||+.+++.+..+..|
T Consensus       190 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~  269 (814)
T 3mkq_A          190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG  269 (814)
T ss_dssp             EEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCS
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecC
Confidence            8886   4567889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC----------eEEEE-----------------------
Q 008467          441 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG----------KLLYS-----------------------  487 (564)
Q Consensus       441 ~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~----------~~~~~-----------------------  487 (564)
                      ...+.+++|+|++..       .+++++ .++.+.+|++..+          +.+..                       
T Consensus       270 ~~~v~~~~~~~~~~~-------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (814)
T 3mkq_A          270 LERSWCIATHPTGRK-------NYIASG-FDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQ  341 (814)
T ss_dssp             SSSEEEEEECTTCGG-------GEEEEE-ETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCS
T ss_pred             CCcEEEEEEccCCCc-------eEEEEE-eCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeeccccccccc
Confidence            999999999998741       235554 4677888887543          22221                       


Q ss_pred             ----------EeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcE
Q 008467          488 ----------LNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTV  557 (564)
Q Consensus       488 ----------~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v  557 (564)
                                +..+...+.+++|+|+|++|++++ |+.+.+|++.......    .+.+.+++|+|+|++||++..++.|
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~~----~~~i~~~~~spdg~~la~~~~~g~v  416 (814)
T 3mkq_A          342 DEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNKA----FGKCQDFVWGPDSNSYALIDETGQI  416 (814)
T ss_dssp             SSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEEE----EEECSEEEECTTSSCEEEECTTCCE
T ss_pred             CccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccccccC----CCceEEEEEeCCCCeEEEEeCCCcE
Confidence                      122444678999999999999998 8999999987654433    2346789999999999999999999


Q ss_pred             EEEE
Q 008467          558 CVLD  561 (564)
Q Consensus       558 ~v~~  561 (564)
                      .+|+
T Consensus       417 ~l~~  420 (814)
T 3mkq_A          417 KYYK  420 (814)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9885

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=5.8e-37  Score=304.13  Aligned_cols=303  Identities=19%  Similarity=0.302  Sum_probs=223.2

Q ss_pred             eEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC--CC
Q 008467          210 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--EG  287 (564)
Q Consensus       210 ~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~--~g  287 (564)
                      .++.+|...|++++|+|++++||+|+.||.|++|++.++...         .......    ..+...|++++|+|  ++
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~---------~~~~~~~----~~~~~~v~~~~~~~~~d~   71 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSN---------WELSDSW----RAHDSSIVAIDWASPEYG   71 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCC---------EEEEEEE----ECCSSCEEEEEECCGGGC
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCc---------ceeccee----ccCCCcEEEEEEcCCCCC
Confidence            567899999999999999999999999999999998754311         0111111    23567899999999  69


Q ss_pred             CEEEEEeCCCeEEEEECCC----------ceeEeecCCCCCEEEEEeCCC--CCEEEEeeCCCcEEEEECCCcceeEEEe
Q 008467          288 TLLATGSYDGQARIWSTNG----------DLKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEEWKQQFE  355 (564)
Q Consensus       288 ~~l~sg~~dg~i~vw~~~~----------~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~~~~~~~~~  355 (564)
                      .+|++|+.||.|++|+...          .....+..|..+|.+++|+|+  +.+|++++.|++|++||+++++....+.
T Consensus        72 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  151 (351)
T 3f3f_A           72 RIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWT  151 (351)
T ss_dssp             SEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCE
T ss_pred             CEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccc
Confidence            9999999999999999764          346678899999999999999  9999999999999999998877554433


Q ss_pred             -------------ecccCeEEEEcCC----CceEEEEeCCCeEEEEEcCCCce--eeEecCCCcceEEEEECCCC----C
Q 008467          356 -------------FHSGPTLDVDWRN----NVSFATSSTDNMIYVCKIGENRP--IKTFAGHQGEVNCVKWDPTG----S  412 (564)
Q Consensus       356 -------------~~~~~~~~~~~~~----~~~~~~~~~d~~i~~~~~~~~~~--~~~~~~h~~~i~~v~~~~~~----~  412 (564)
                                   .+...+..+.|.+    ...+++++.++.+.+|.......  +..+.+|...|++++|+|++    +
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~  231 (351)
T 3f3f_A          152 LTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQ  231 (351)
T ss_dssp             EEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSE
T ss_pred             ccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcce
Confidence                         3445677888865    56788999999998887776654  77888999999999999998    8


Q ss_pred             EEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCC
Q 008467          413 LLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR  492 (564)
Q Consensus       413 ~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~  492 (564)
                      +|++|+.||.|++||++.+........+........+.+......     .....+.....+.+|+....+.+..+.+|.
T Consensus       232 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  306 (351)
T 3f3f_A          232 LIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDA-----QGRSDSNTEEKAELQSNLQVELLSEHDDHN  306 (351)
T ss_dssp             EEEEEETTSCEEEEEEEECC--------------------------------------------CCSEEEEEEEEECTTS
T ss_pred             EEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccc-----ccccccccceeeeecccccccEEEEEeccc
Confidence            999999999999999987654433332222222222222211000     012233445567777777778889999999


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q 008467          493 EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY  530 (564)
Q Consensus       493 ~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~  530 (564)
                      .+|++++|+|+|++|++|+.||.|+||++.+++.+..+
T Consensus       307 ~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          307 GEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             SCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred             ccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence            99999999999999999999999999999988655443

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.1e-38  Score=319.70  Aligned_cols=279  Identities=19%  Similarity=0.359  Sum_probs=245.0

Q ss_pred             CeEEEEECCCCC-EEEEE----------eCCCeEEEEECCCce---eEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEE
Q 008467          277 DVTTLDWNGEGT-LLATG----------SYDGQARIWSTNGDL---KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIV  342 (564)
Q Consensus       277 ~V~~l~~s~~g~-~l~sg----------~~dg~i~vw~~~~~~---~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~i  342 (564)
                      .|.+++|+|+|. +|++|          +.||.|++|+.....   ......|..+|.+++|+|++.+|++|+.|+.|++
T Consensus        14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~v   93 (416)
T 2pm9_A           14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLEL   93 (416)
T ss_dssp             ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEE
T ss_pred             hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEE
Confidence            478899999997 99999          889999999986532   2223368999999999999999999999999999


Q ss_pred             EECCC----cceeEEEeecccCeEEEEcCC--CceEEEEeCCCeEEEEEcCCCc------ee---eEecCCCcceEEEEE
Q 008467          343 WDVKT----EEWKQQFEFHSGPTLDVDWRN--NVSFATSSTDNMIYVCKIGENR------PI---KTFAGHQGEVNCVKW  407 (564)
Q Consensus       343 wd~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~------~~---~~~~~h~~~i~~v~~  407 (564)
                      ||+.+    ......+..|...+.++.|.+  ...+++++.|+.|++|++....      ..   ..+.+|...|.+++|
T Consensus        94 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  173 (416)
T 2pm9_A           94 YSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAW  173 (416)
T ss_dssp             ECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEE
T ss_pred             eecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEe
Confidence            99987    446777888999999999975  4678999999999999998765      22   234689999999999


Q ss_pred             CCC-CCEEEEEeCCCcEEEEeCCCCeeeeecccc------cccEEEEEEccCCCCCCCCCCcEEEEEEeCCC---eEEEE
Q 008467          408 DPT-GSLLASCSDDVTAKIWNMKQDKYVHDLREH------SKEIYTIRWSPTGSGTNNPNQQLILASASFDS---TVKLW  477 (564)
Q Consensus       408 ~~~-~~~las~s~dg~i~iwd~~~~~~~~~~~~~------~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg---~i~iw  477 (564)
                      +|+ +.+|++++.|+.|++||+++++.+..+..|      ...|.+++|+|++.        .+|++++.|+   .|++|
T Consensus       174 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~~l~~~~~d~~~~~i~~~  245 (416)
T 2pm9_A          174 NQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNS--------TRVATATGSDNDPSILIW  245 (416)
T ss_dssp             CSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCT--------TEEEEEECCSSSCCCCEE
T ss_pred             CCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCC--------CEEEEEECCCCCceEEEE
Confidence            999 789999999999999999999998888776      78899999999863        2789999999   99999


Q ss_pred             eCCCC-eEEEEEe-CCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEecC-CCEEEEEEccCC-CEEEEEE
Q 008467          478 DVELG-KLLYSLN-GHREPVYSLAFSP-TGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEG-DKIAACF  552 (564)
Q Consensus       478 d~~~~-~~~~~~~-~h~~~i~~~~~sp-dg~~lasgs~dg~i~iw~~~~~~~~~~~~~~-~~i~~~~w~~~g-~~la~~~  552 (564)
                      |++++ ..+..+. +|..+|++++|+| ++++|++|+.||.|++||+++++.+..+..+ ..|.+++|+|+| ++|++++
T Consensus       246 d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~  325 (416)
T 2pm9_A          246 DLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACAS  325 (416)
T ss_dssp             ETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECC
T ss_pred             eCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEe
Confidence            99986 5667777 8999999999999 9999999999999999999999999988764 568999999999 8999999


Q ss_pred             cCCcEEEEEee
Q 008467          553 ANHTVCVLDFR  563 (564)
Q Consensus       553 ~~~~v~v~~~~  563 (564)
                      .|+.|.|||++
T Consensus       326 ~d~~i~iw~~~  336 (416)
T 2pm9_A          326 FDNKIEVQTLQ  336 (416)
T ss_dssp             SSSEEEEEESC
T ss_pred             cCCcEEEEEcc
Confidence            99999999985

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.9e-36  Score=305.77  Aligned_cols=249  Identities=26%  Similarity=0.424  Sum_probs=207.3

Q ss_pred             CccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEe
Q 008467          215 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS  294 (564)
Q Consensus       215 h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~  294 (564)
                      +...|.+++|+|+|++||+|+.|++|+|||+.++..             ....    ..|...|++++|+|++.+|++|+
T Consensus       122 ~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~-------------~~~~----~~h~~~v~~~~~~p~~~~l~s~s  184 (393)
T 1erj_A          122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI-------------VMIL----QGHEQDIYSLDYFPSGDKLVSGS  184 (393)
T ss_dssp             CCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-------------EEEE----CCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcE-------------EEEE----ccCCCCEEEEEEcCCCCEEEEec
Confidence            344699999999999999999999999999876431             1111    23567899999999999999999


Q ss_pred             CCCeEEEEECCCceeEeecCCCCCEEEEEeCC-CCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEE
Q 008467          295 YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA  373 (564)
Q Consensus       295 ~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (564)
                      .||.|++||...........+...|.+++|+| ++.+|++|+.|++|++||++++.....+..                 
T Consensus       185 ~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~-----------------  247 (393)
T 1erj_A          185 GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS-----------------  247 (393)
T ss_dssp             TTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------------------
T ss_pred             CCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecc-----------------
Confidence            99999999986543333334677899999999 899999999999999999988765543321                 


Q ss_pred             EEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCC------------eeeeeccccc
Q 008467          374 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD------------KYVHDLREHS  441 (564)
Q Consensus       374 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~------------~~~~~~~~~~  441 (564)
                                       ......+|...|.+++|+|++++|++|+.|++|++||+++.            .+...+.+|.
T Consensus       248 -----------------~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~  310 (393)
T 1erj_A          248 -----------------ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK  310 (393)
T ss_dssp             ----------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCS
T ss_pred             -----------------cccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEeccc
Confidence                             11223579999999999999999999999999999998753            3455677899


Q ss_pred             ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcC------CCCEEEEEeCCCc
Q 008467          442 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSP------TGEYLASGSLDKS  515 (564)
Q Consensus       442 ~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp------dg~~lasgs~dg~  515 (564)
                      ..|.+++|+|++.         +|++|+.|++|++||+.+++.+..+.+|...|.+++|+|      ++++||+|+.||+
T Consensus       311 ~~v~~~~~~~~~~---------~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~  381 (393)
T 1erj_A          311 DFVLSVATTQNDE---------YILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCK  381 (393)
T ss_dssp             SCEEEEEECGGGC---------EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSE
T ss_pred             CcEEEEEECCCCC---------EEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCc
Confidence            9999999999875         799999999999999999999999999999999999986      6899999999999


Q ss_pred             EEEEeCCC
Q 008467          516 MHIWSLKE  523 (564)
Q Consensus       516 i~iw~~~~  523 (564)
                      |+||++..
T Consensus       382 i~iW~~~~  389 (393)
T 1erj_A          382 ARIWKYKK  389 (393)
T ss_dssp             EEEEEEEE
T ss_pred             EEECcccc
Confidence            99999764

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-37  Score=317.41  Aligned_cols=289  Identities=18%  Similarity=0.232  Sum_probs=236.5

Q ss_pred             CceeEc-cCCccceEEEEECC-CCCEEEEEECCCcEEEEeCCC---CCCCCCCCCCCceEEEEEeeccccccCCCCeEEE
Q 008467          207 SDVTIL-EGHTSEVCACAWSP-AGSLLASGSGDSTARIWTIAD---GTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTL  281 (564)
Q Consensus       207 ~~~~~l-~~h~~~V~~~~~sp-~~~~lasgs~D~~i~iW~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l  281 (564)
                      ..+..+ .+|.+.|++++|+| ++++||+|+.||+|+||++.+   +....     .  ...        ..+...|+++
T Consensus        53 ~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-----~--~~~--------~~h~~~v~~~  117 (437)
T 3gre_A           53 KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYS-----S--SLT--------YDCSSTVTQI  117 (437)
T ss_dssp             CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCS-----C--SEE--------EECSSCEEEE
T ss_pred             eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccc-----e--eee--------ccCCCCEEEE
Confidence            344556 89999999999999 999999999999999999865   22100     0  001        1246789999


Q ss_pred             EECCCCCEEEEEeCCCeEEEEEC----CCceeEeec----------C--CCCCEEEEE--eCCCCCEEEEeeCCCcEEEE
Q 008467          282 DWNGEGTLLATGSYDGQARIWST----NGDLKCTLS----------K--HKGPIFSLK--WNKKGDYLLTGSCDKTAIVW  343 (564)
Q Consensus       282 ~~s~~g~~l~sg~~dg~i~vw~~----~~~~~~~~~----------~--h~~~V~~l~--~~~~~~~l~s~s~D~~v~iw  343 (564)
                      +|+|++.+|++|+.||.|++|+.    .+.....+.          .  +...+.++.  +++++.+|++|+.|++|++|
T Consensus       118 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw  197 (437)
T 3gre_A          118 TMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIF  197 (437)
T ss_dssp             EECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEE
T ss_pred             EEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence            99999999999999999999987    343332222          1  556677776  66889999999999999999


Q ss_pred             ECCCcceeEEEee--cccCeEEEEcCCC-ceEEEEeCCCeEEEEEcCCCceeeEec-CCCcceEEEEECC----CCCEEE
Q 008467          344 DVKTEEWKQQFEF--HSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDP----TGSLLA  415 (564)
Q Consensus       344 d~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~-~h~~~i~~v~~~~----~~~~la  415 (564)
                      |+++++....+..  |...+.++.|.++ ..+++++.|+.|++|++...+++..+. +|...|.+++|+|    ++.+|+
T Consensus       198 d~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~  277 (437)
T 3gre_A          198 DIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVV  277 (437)
T ss_dssp             ETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEE
T ss_pred             eCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEE
Confidence            9999999998887  7889999999754 567889999999999999999988886 8888999996664    677999


Q ss_pred             EEeCCCcEEEEeCCCCeeeeeccccc--------------------------ccEEEEEEccCCCCCCCCCCcEEEEEEe
Q 008467          416 SCSDDVTAKIWNMKQDKYVHDLREHS--------------------------KEIYTIRWSPTGSGTNNPNQQLILASAS  469 (564)
Q Consensus       416 s~s~dg~i~iwd~~~~~~~~~~~~~~--------------------------~~i~~i~~~p~~~~~~~~~~~~~l~s~s  469 (564)
                      +|+.||+|++||+++++++..+..|.                          ..|.+++|+ ++         .+|++|+
T Consensus       278 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~---------~~l~s~~  347 (437)
T 3gre_A          278 GGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND---------KILLTDE  347 (437)
T ss_dssp             EESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT---------EEEEEEG
T ss_pred             EEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc---------eEEEecC
Confidence            99999999999999998887776554                          345555665 22         3799999


Q ss_pred             CCCeEEEEeCCCCeEEEEEeC-------------------------------------CCCCEEEEEEcCC--CCEEEEE
Q 008467          470 FDSTVKLWDVELGKLLYSLNG-------------------------------------HREPVYSLAFSPT--GEYLASG  510 (564)
Q Consensus       470 ~dg~i~iwd~~~~~~~~~~~~-------------------------------------h~~~i~~~~~spd--g~~lasg  510 (564)
                      .||.|++||+.+++++..+.+                                     |...|++++|+++  +.+|++|
T Consensus       348 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~  427 (437)
T 3gre_A          348 ATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVAC  427 (437)
T ss_dssp             GGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEE
T ss_pred             CCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEE
Confidence            999999999998876666654                                     8899999999998  7899999


Q ss_pred             eCCCcEEEEe
Q 008467          511 SLDKSMHIWS  520 (564)
Q Consensus       511 s~dg~i~iw~  520 (564)
                      +.||.|+||+
T Consensus       428 ~~dG~I~iw~  437 (437)
T 3gre_A          428 DNSGLIGIFQ  437 (437)
T ss_dssp             ETTSCEEEEC
T ss_pred             cCCceEEEeC
Confidence            9999999995

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.8e-35  Score=302.76  Aligned_cols=275  Identities=24%  Similarity=0.481  Sum_probs=239.8

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEECC-CceeEe--ecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEE
Q 008467          277 DVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCT--LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ  353 (564)
Q Consensus       277 ~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~--~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~  353 (564)
                      ....|+||++ ++|++|. |++|+|||.. +.....  +.+|...|++|+|+|+|++|++|+.|++|++||+.+++.+..
T Consensus       107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~  184 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN  184 (420)
T ss_dssp             TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence            4678999976 5777765 9999999976 444443  457888999999999999999999999999999999999999


Q ss_pred             EeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCC-ceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCe
Q 008467          354 FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK  432 (564)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~  432 (564)
                      +..|...+.++.|.+ ..+++++.|+.+++|+.... ..+..+.+|...+.++.|+|+++++++++.|+.+++|+..+++
T Consensus       185 ~~~h~~~v~~~s~~~-~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~  263 (420)
T 4gga_A          185 MTSHSARVGSLSWNS-YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE  263 (420)
T ss_dssp             ECCCSSCEEEEEEET-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCS
T ss_pred             EeCCCCceEEEeeCC-CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccc
Confidence            999999999988854 57889999999999998764 4567889999999999999999999999999999999997664


Q ss_pred             ----eeeecccccccEEEEEEccCCCCCCCCCCcEEEEE--EeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCE
Q 008467          433 ----YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAS--ASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY  506 (564)
Q Consensus       433 ----~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s--~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~  506 (564)
                          .+.....|...|.+++|+|.+..        ++++  |+.|++|++||+.+++++..+..| ..+.++.|+|+++.
T Consensus       264 ~~~~~~~~~~~~~~~V~~~~~~p~~~~--------~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~  334 (420)
T 4gga_A          264 GGWVPLQTFTQHQGAVKAVAWCPWQSN--------VLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKE  334 (420)
T ss_dssp             SCSCCSEEECCCSSCEEEEEECTTCTT--------EEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTE
T ss_pred             ccceeeeeecccCCceeeeeeCCCccc--------EEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCe
Confidence                34566788999999999997642        4444  568999999999999999888865 57899999999999


Q ss_pred             EEEEe--CCCcEEEEeCCCCeEEEEEecC-CCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          507 LASGS--LDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       507 lasgs--~dg~i~iw~~~~~~~~~~~~~~-~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      |++++  .|+.|+|||+.+++++.++.++ +.|++++|+|+|++||+|+.|++|+|||+.
T Consensus       335 lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~  394 (420)
T 4gga_A          335 LISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF  394 (420)
T ss_dssp             EEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred             EEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence            98765  7899999999999999999875 569999999999999999999999999974

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.7e-36  Score=302.68  Aligned_cols=280  Identities=15%  Similarity=0.250  Sum_probs=235.7

Q ss_pred             CCCCeEEEEECCCCCE-EEEEeC---CCeEEEEECCCc-ee-EeecCCCCCEEEEEeCCC---CCEEEEeeCCCcEEEEE
Q 008467          274 KSKDVTTLDWNGEGTL-LATGSY---DGQARIWSTNGD-LK-CTLSKHKGPIFSLKWNKK---GDYLLTGSCDKTAIVWD  344 (564)
Q Consensus       274 ~~~~V~~l~~s~~g~~-l~sg~~---dg~i~vw~~~~~-~~-~~~~~h~~~V~~l~~~~~---~~~l~s~s~D~~v~iwd  344 (564)
                      |...|++++|+|++.. +++|+.   ||.|++|+.... .. .....|..+|.+++|+|+   +.+|++|+.|+.|++||
T Consensus        17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd   96 (357)
T 3i2n_A           17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWN   96 (357)
T ss_dssp             CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEEC
T ss_pred             CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEe
Confidence            5678999999999965 456665   999999997654 32 223479999999999999   69999999999999999


Q ss_pred             CCCcc-eeEEEeecccCeEEEEcC-------CCceEEEEeCCCeEEEEEcCCCc-eeeEecCCCc----ceEEEE----E
Q 008467          345 VKTEE-WKQQFEFHSGPTLDVDWR-------NNVSFATSSTDNMIYVCKIGENR-PIKTFAGHQG----EVNCVK----W  407 (564)
Q Consensus       345 ~~~~~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~d~~i~~~~~~~~~-~~~~~~~h~~----~i~~v~----~  407 (564)
                      +.++. ....+..|...+.++.|.       +...+++++.|+.|++|++.... ++..+..|.+    .+.+++    |
T Consensus        97 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  176 (357)
T 3i2n_A           97 LEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAY  176 (357)
T ss_dssp             TTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCC
T ss_pred             CCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEecc
Confidence            99887 788888899999999663       34578999999999999999876 7888876655    788888    7


Q ss_pred             CCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEcc---CCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE
Q 008467          408 DPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP---TGSGTNNPNQQLILASASFDSTVKLWDVELGKL  484 (564)
Q Consensus       408 ~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p---~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~  484 (564)
                      +|++++|++++.||.|++||+++++... ...|...|.+++|+|   ++.         +|++++.||.|++||+++++.
T Consensus       177 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~---------~l~~~~~dg~i~i~d~~~~~~  246 (357)
T 3i2n_A          177 NQEERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDISMN---------KLVATSLEGKFHVFDMRTQHP  246 (357)
T ss_dssp             C-CCCEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSSSCC---------EEEEEESTTEEEEEEEEEEET
T ss_pred             CCCCCEEEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCCCCCCCC---------EEEEECCCCeEEEEeCcCCCc
Confidence            8999999999999999999999988754 366889999999999   553         788999999999999987654


Q ss_pred             EEE-----EeCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCC-------------------eEEEEEec-CCCEEE
Q 008467          485 LYS-----LNGHREPVYSLAFSPTGE-YLASGSLDKSMHIWSLKEG-------------------KIVKTYTG-NGGIFE  538 (564)
Q Consensus       485 ~~~-----~~~h~~~i~~~~~spdg~-~lasgs~dg~i~iw~~~~~-------------------~~~~~~~~-~~~i~~  538 (564)
                      +..     +.+|..+|++++|+|+++ +|++|+.||.|++|+++++                   +.+..+.. ...|.+
T Consensus       247 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~  326 (357)
T 3i2n_A          247 TKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISS  326 (357)
T ss_dssp             TTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEE
T ss_pred             ccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeE
Confidence            333     348999999999999998 8999999999999999754                   34555554 456999


Q ss_pred             EEEccCCCEEE-EEEcCCcEEEEEee
Q 008467          539 VCWNKEGDKIA-ACFANHTVCVLDFR  563 (564)
Q Consensus       539 ~~w~~~g~~la-~~~~~~~v~v~~~~  563 (564)
                      ++|+|+|+.|+ +|+.|+.|.|||+.
T Consensus       327 ~~~s~~~~~l~~s~~~d~~i~iw~~~  352 (357)
T 3i2n_A          327 LDWSPDKRGLCVCSSFDQTVRVLIVT  352 (357)
T ss_dssp             EEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred             EEEcCCCCeEEEEecCCCcEEEEECC
Confidence            99999999998 79999999999986

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=4e-37  Score=302.40  Aligned_cols=252  Identities=25%  Similarity=0.420  Sum_probs=205.9

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCc---eeEeecCCCCCEEEEEeCC--CCCEEEEeeCCCcEEEEECCC
Q 008467          273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNK--KGDYLLTGSCDKTAIVWDVKT  347 (564)
Q Consensus       273 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~--~~~~l~s~s~D~~v~iwd~~~  347 (564)
                      .|...|++++|+|+|++|++|+.|+.|+||+....   ....+.+|.++|++++|++  ++++|++|+.|++|++||+++
T Consensus        11 ~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~   90 (316)
T 3bg1_A           11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN   90 (316)
T ss_dssp             ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSS
T ss_pred             cccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCC
Confidence            46788999999999999999999999999997542   3567889999999999986  489999999999999999876


Q ss_pred             cceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC--CCEEEEEeCCCcEEE
Q 008467          348 EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKI  425 (564)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~--~~~las~s~dg~i~i  425 (564)
                      +.+.                                       ++..+.+|...|++++|+|+  +.+|++|+.|++|++
T Consensus        91 ~~~~---------------------------------------~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~l  131 (316)
T 3bg1_A           91 GTWE---------------------------------------KSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISL  131 (316)
T ss_dssp             SCCC---------------------------------------EEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEE
T ss_pred             Ccce---------------------------------------EEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEE
Confidence            5321                                       23356789999999999998  789999999999999


Q ss_pred             EeCCCCee---eeecccccccEEEEEEccCCCCC--------CCCCCcEEEEEEeCCCeEEEEeCCCC---eEEEEEeCC
Q 008467          426 WNMKQDKY---VHDLREHSKEIYTIRWSPTGSGT--------NNPNQQLILASASFDSTVKLWDVELG---KLLYSLNGH  491 (564)
Q Consensus       426 wd~~~~~~---~~~~~~~~~~i~~i~~~p~~~~~--------~~~~~~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~h  491 (564)
                      ||++....   ...+..|...+.++.|+|+....        ..+....+|++|+.|++|++||++.+   +++..+.+|
T Consensus       132 wd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h  211 (316)
T 3bg1_A          132 LTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH  211 (316)
T ss_dssp             EEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC
T ss_pred             EecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccC
Confidence            99987532   35567899999999999974210        01111236899999999999999755   467788999


Q ss_pred             CCCEEEEEEcCCC----CEEEEEeCCCcEEEEeCCCC---e-EEEEE-ecCCCEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467          492 REPVYSLAFSPTG----EYLASGSLDKSMHIWSLKEG---K-IVKTY-TGNGGIFEVCWNKEGDKIAACFANHTVCVLDF  562 (564)
Q Consensus       492 ~~~i~~~~~spdg----~~lasgs~dg~i~iw~~~~~---~-~~~~~-~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~  562 (564)
                      ..+|.+++|+|++    ++||+|+.||+|+||++.++   . ....+ .....|++++|+|+|++||+|+.|+.|+||+.
T Consensus       212 ~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~  291 (316)
T 3bg1_A          212 SDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKE  291 (316)
T ss_dssp             SSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEE
T ss_pred             CCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEE
Confidence            9999999999997    89999999999999998762   1 11122 23567999999999999999999999999986


Q ss_pred             e
Q 008467          563 R  563 (564)
Q Consensus       563 ~  563 (564)
                      .
T Consensus       292 ~  292 (316)
T 3bg1_A          292 S  292 (316)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=3.3e-36  Score=301.48  Aligned_cols=291  Identities=18%  Similarity=0.311  Sum_probs=237.5

Q ss_pred             cCCceeEccCCccceEEEEECCC---CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEE
Q 008467          205 PNSDVTILEGHTSEVCACAWSPA---GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTL  281 (564)
Q Consensus       205 ~~~~~~~l~~h~~~V~~~~~sp~---~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l  281 (564)
                      |...+.++.+|...|++++|+|+   |++|++|+.||.|+||++.+...         .  .....    ..+...|+++
T Consensus        28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~---------~--~~~~~----~~h~~~v~~~   92 (368)
T 3mmy_A           28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---------T--IPKAQ----QMHTGPVLDV   92 (368)
T ss_dssp             TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC---------E--EEEEE----EECSSCEEEE
T ss_pred             CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc---------e--eEEEe----ccccCCEEEE
Confidence            44456788999999999999999   69999999999999999875211         0  10111    2346789999


Q ss_pred             EECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEe--CCCCCEEEEeeCCCcEEEEECCCcceeEEEeeccc
Q 008467          282 DWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKW--NKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG  359 (564)
Q Consensus       282 ~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~--~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~  359 (564)
                      +|+|++++|++|+.||.|++|+........+..|..+|.+++|  +|++.+|++++.|++|++||+++++....+..+. 
T Consensus        93 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-  171 (368)
T 3mmy_A           93 CWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-  171 (368)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-
T ss_pred             EECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-
Confidence            9999999999999999999999887666667889999999999  9999999999999999999999998888777654 


Q ss_pred             CeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeE-e-cCCCcceEEEEECCCCCE----EEEEeCCCcEEEEeCCCC--
Q 008467          360 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKT-F-AGHQGEVNCVKWDPTGSL----LASCSDDVTAKIWNMKQD--  431 (564)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~-~-~~h~~~i~~v~~~~~~~~----las~s~dg~i~iwd~~~~--  431 (564)
                      .+..+.+... .+++++.++.+.+|++........ + ..+...+.++++.++...    +++|+.||.|++|+++..  
T Consensus       172 ~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~  250 (368)
T 3mmy_A          172 RCYCADVIYP-MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP  250 (368)
T ss_dssp             CEEEEEEETT-EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCH
T ss_pred             CceEEEecCC-eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCc
Confidence            5556666554 566777889999999976543222 1 123345566666555544    999999999999999887  


Q ss_pred             -eeeeecccccc------------cEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEE
Q 008467          432 -KYVHDLREHSK------------EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSL  498 (564)
Q Consensus       432 -~~~~~~~~~~~------------~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~  498 (564)
                       ..+..+..|..            .|.+++|+|++.         +|++|+.||.|++||+.+++++..+.+|..+|.++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~---------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  321 (368)
T 3mmy_A          251 AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHG---------TLATVGSDGRFSFWDKDARTKLKTSEQLDQPISAC  321 (368)
T ss_dssp             HHHSEEEECSEEC----CCCEEECCEEEEEECTTTC---------CEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEE
T ss_pred             cccceeeeeeecccccccccccccceEEEEEecCCC---------EEEEEccCCeEEEEECCCCcEEEEecCCCCCceEE
Confidence             45666777765            799999999875         68999999999999999999999999999999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeC
Q 008467          499 AFSPTGEYLASGSLDKSMHIWSL  521 (564)
Q Consensus       499 ~~spdg~~lasgs~dg~i~iw~~  521 (564)
                      +|+|+|++||+|+.|+..+.|++
T Consensus       322 ~~s~~g~~l~~~s~d~~~~~~~~  344 (368)
T 3mmy_A          322 CFNHNGNIFAYASSYDWSKGHEF  344 (368)
T ss_dssp             EECTTSSCEEEEECCCSTTCGGG
T ss_pred             EECCCCCeEEEEecccccccccc
Confidence            99999999999999876555554

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.4e-36  Score=306.80  Aligned_cols=277  Identities=21%  Similarity=0.363  Sum_probs=245.9

Q ss_pred             CCCeEEEEECCCCC-EEEEEeCCCeEEEEEC----CCce-------eEeecC----------CCCCEEEEEeCCCCCEEE
Q 008467          275 SKDVTTLDWNGEGT-LLATGSYDGQARIWST----NGDL-------KCTLSK----------HKGPIFSLKWNKKGDYLL  332 (564)
Q Consensus       275 ~~~V~~l~~s~~g~-~l~sg~~dg~i~vw~~----~~~~-------~~~~~~----------h~~~V~~l~~~~~~~~l~  332 (564)
                      ...|++++|+|+|+ +|++|+.||.|++|+.    ....       ...+..          |.++|++++|+|++++|+
T Consensus        45 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  124 (425)
T 1r5m_A           45 LDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIV  124 (425)
T ss_dssp             CSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEE
T ss_pred             cCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEE
Confidence            46799999999999 9999999999999998    5332       333333          688999999999999999


Q ss_pred             EeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCC-ceEEEEeCCCeEEEEEcCCCceeeEecCCCcc----------
Q 008467          333 TGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGE----------  401 (564)
Q Consensus       333 s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~----------  401 (564)
                      +|+.|+.|++|| .++.....+..|...+.++.|.++ ..+++++.|+.|++|++..++.+..+..|...          
T Consensus       125 ~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (425)
T 1r5m_A          125 TGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHS  203 (425)
T ss_dssp             EEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-------------
T ss_pred             EEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeecccc
Confidence            999999999999 677788888889999999999754 56889999999999999999999888888776          


Q ss_pred             -----eEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEE
Q 008467          402 -----VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKL  476 (564)
Q Consensus       402 -----i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~i  476 (564)
                           +.+++|+|++ .+++++.||.|++||+.+++.+..+..|...|.+++|+|++.         +|++++.||.|++
T Consensus       204 ~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~---------~l~~~~~d~~i~i  273 (425)
T 1r5m_A          204 GDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK---------LLLSASDDGTLRI  273 (425)
T ss_dssp             --CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTT---------EEEEEETTSCEEE
T ss_pred             CCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCC---------EEEEEcCCCEEEE
Confidence                 9999999875 578899999999999999998888999999999999999875         7899999999999


Q ss_pred             EeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec-CCCEEEEEEccCCCEEEEEEcCC
Q 008467          477 WDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANH  555 (564)
Q Consensus       477 wd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~-~~~i~~~~w~~~g~~la~~~~~~  555 (564)
                      ||+++++.+..+.+|..+|.+++|+|++ +|++++.||.|++||+++++.+..+.. ...+..++|+|+|++|++++.|+
T Consensus       274 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  352 (425)
T 1r5m_A          274 WHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDG  352 (425)
T ss_dssp             ECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTS
T ss_pred             EECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCC
Confidence            9999999888999999999999999999 999999999999999999999988876 45799999999999999999999


Q ss_pred             cEEEEEee
Q 008467          556 TVCVLDFR  563 (564)
Q Consensus       556 ~v~v~~~~  563 (564)
                      .|.|||++
T Consensus       353 ~i~i~~~~  360 (425)
T 1r5m_A          353 QVNVYDLK  360 (425)
T ss_dssp             CEEEEECH
T ss_pred             eEEEEECC
Confidence            99999985

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=5.6e-35  Score=299.11  Aligned_cols=284  Identities=25%  Similarity=0.473  Sum_probs=233.2

Q ss_pred             eEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCe
Q 008467          219 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQ  298 (564)
Q Consensus       219 V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~  298 (564)
                      .+.++||++ ++||+|. |++|+|||+.++...             ..+.  ...+...|++++|+|+|++|++|+.||.
T Consensus       108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~-------------~~~~--~~~~~~~V~sv~fspdg~~lasgs~Dg~  170 (420)
T 4gga_A          108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGDIL-------------QLLQ--MEQPGEYISSVAWIKEGNYLAVGTSSAE  170 (420)
T ss_dssp             CBCEEECTT-SEEEEEE-TTEEEEEETTTCCEE-------------EEEE--CCSTTCCEEEEEECTTSSEEEEEETTSC
T ss_pred             ceeEEECCC-CEEEEEe-CCEEEEEECCCCCEE-------------EEEE--ecCCCCcEEEEEECCCCCEEEEEECCCe
Confidence            578999975 5777764 999999999876421             1111  1234567999999999999999999999


Q ss_pred             EEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCc-ceeEEEeecccCeEEEEcCC-CceEEEE
Q 008467          299 ARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE-EWKQQFEFHSGPTLDVDWRN-NVSFATS  375 (564)
Q Consensus       299 i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~  375 (564)
                      |+||+.. +.....+.+|...|.++.|+  +..|++|+.|+.+++||.... .....+..|...+..+.|.. ...++++
T Consensus       171 v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~  248 (420)
T 4gga_A          171 VQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASG  248 (420)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             EEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeee
Confidence            9999976 56677889999999998875  579999999999999998764 44567788888888888865 4678899


Q ss_pred             eCCCeEEEEEcCCCc----eeeEecCCCcceEEEEECCCCC-EEEE--EeCCCcEEEEeCCCCeeeeecccccccEEEEE
Q 008467          376 STDNMIYVCKIGENR----PIKTFAGHQGEVNCVKWDPTGS-LLAS--CSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR  448 (564)
Q Consensus       376 ~~d~~i~~~~~~~~~----~~~~~~~h~~~i~~v~~~~~~~-~las--~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~  448 (564)
                      +.|+.+++|+...+.    ++..+..|.+.|.+++|+|.+. ++++  |+.|++|++||+.++.++..+..| ..+.++.
T Consensus       249 ~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~  327 (420)
T 4gga_A          249 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSIL  327 (420)
T ss_dssp             ETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEE
T ss_pred             eccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeee
Confidence            999999999987654    4567788999999999999764 5554  457999999999999988887655 5688999


Q ss_pred             EccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 008467          449 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK  528 (564)
Q Consensus       449 ~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~  528 (564)
                      |+|++.       .++.++|+.|+.|+|||+.+++++.++.+|..+|++++|||||++|||||.|++|+|||+.+....+
T Consensus       328 ~~~~~~-------~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~  400 (420)
T 4gga_A          328 WSPHYK-------ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPAR  400 (420)
T ss_dssp             EETTTT-------EEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC-
T ss_pred             ecCCCC-------eEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccc
Confidence            999875       1222334479999999999999999999999999999999999999999999999999997655443


Q ss_pred             E
Q 008467          529 T  529 (564)
Q Consensus       529 ~  529 (564)
                      .
T Consensus       401 ~  401 (420)
T 4gga_A          401 R  401 (420)
T ss_dssp             -
T ss_pred             h
Confidence            3

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=8e-36  Score=306.83  Aligned_cols=292  Identities=22%  Similarity=0.405  Sum_probs=237.6

Q ss_pred             ccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEE
Q 008467          212 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA  291 (564)
Q Consensus       212 l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~  291 (564)
                      ..+|...|.+++|  ++++|++|+.||.|++||+.++..             ....    ..+...|++++|  ++++|+
T Consensus       129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~-------------~~~~----~~h~~~v~~l~~--~~~~l~  187 (435)
T 1p22_A          129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLEC-------------KRIL----TGHTGSVLCLQY--DERVII  187 (435)
T ss_dssp             CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCE-------------EEEE----CCCSSCEEEEEC--CSSEEE
T ss_pred             ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeE-------------EEEE----cCCCCcEEEEEE--CCCEEE
Confidence            4567788998877  799999999999999999876532             1111    235678999999  789999


Q ss_pred             EEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCccee---EEEeecccCeEEEEcC
Q 008467          292 TGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK---QQFEFHSGPTLDVDWR  367 (564)
Q Consensus       292 sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~---~~~~~~~~~~~~~~~~  367 (564)
                      +|+.||.|++|+.. +.....+.+|..+|.+++|++  .++++|+.|++|++||+.++...   ..+..|...+..+.| 
T Consensus       188 sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-  264 (435)
T 1p22_A          188 TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-  264 (435)
T ss_dssp             EEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-
T ss_pred             EEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe-
Confidence            99999999999975 567778899999999999974  59999999999999999887655   556778888999998 


Q ss_pred             CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEE
Q 008467          368 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI  447 (564)
Q Consensus       368 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i  447 (564)
                      +...+++++.|+.|++|++.+..++..+.+|...|.+++|  +++++++|+.||+|++||+++++++..+.+|...|.++
T Consensus       265 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~  342 (435)
T 1p22_A          265 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI  342 (435)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEE
Confidence            6678899999999999999999999999999999999999  47899999999999999999999999999999999999


Q ss_pred             EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe---------EEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 008467          448 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK---------LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHI  518 (564)
Q Consensus       448 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~---------~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~i  518 (564)
                      .|.  +.         +|++|+.||.|++||+.++.         ++..+.+|..+|++++|  ++.+|++|+.||.|++
T Consensus       343 ~~~--~~---------~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~i  409 (435)
T 1p22_A          343 RFD--NK---------RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILI  409 (435)
T ss_dssp             ECC--SS---------EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEE
T ss_pred             Eec--CC---------EEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEE
Confidence            983  22         79999999999999987665         88899999999999999  7889999999999999


Q ss_pred             EeCCCCeEEEEEecCCCEEEEEEc
Q 008467          519 WSLKEGKIVKTYTGNGGIFEVCWN  542 (564)
Q Consensus       519 w~~~~~~~~~~~~~~~~i~~~~w~  542 (564)
                      ||+.+...............++|.
T Consensus       410 wd~~~~~~~~~~~~~~~~~~~~~~  433 (435)
T 1p22_A          410 WDFLNDPAAQAEPPRSPSRTYTYI  433 (435)
T ss_dssp             EC----------------------
T ss_pred             EECCCCCCcccCCCCCCccceeee
Confidence            999887655544433444445543

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.1e-34  Score=284.59  Aligned_cols=276  Identities=23%  Similarity=0.465  Sum_probs=236.2

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEECC-CceeEee--cCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEE
Q 008467          278 VTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTL--SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF  354 (564)
Q Consensus       278 V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~--~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  354 (564)
                      ..+|+||+++ +|++| .|++|+|||.. ++....+  .+|...|++++|+|++++|++|+.|++|++||+++++.+..+
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~  105 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM  105 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence            5679999986 67765 59999999975 4555444  578889999999999999999999999999999999999999


Q ss_pred             eecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCC-ceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCee
Q 008467          355 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY  433 (564)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~  433 (564)
                      ..|...+..+.+.+ ..+++++.++.+.+|+.... ..+..+.+|...+.++.+++++++|++++.|++|++||+.+++.
T Consensus       106 ~~h~~~~~~~~~~~-~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  184 (318)
T 4ggc_A          106 TSHSARVGSLSWNS-YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG  184 (318)
T ss_dssp             ECCSSCEEEEEEET-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTT
T ss_pred             cCccceEEEeecCC-CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcc
Confidence            99988887777654 46888999999999998765 46678899999999999999999999999999999999987653


Q ss_pred             ----eeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEE
Q 008467          434 ----VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS  509 (564)
Q Consensus       434 ----~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~las  509 (564)
                          ......|...|.++.+.|.+..      -..+++++.+++|++||........... +...+..+.|+|++..+++
T Consensus       185 ~~~~~~~~~~~~~~v~~~~~~~~~~~------~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~  257 (318)
T 4ggc_A          185 GWVPLQTFTQHQGAVKAVAWCPWQSN------VLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELIS  257 (318)
T ss_dssp             BSCCSEEECCCCSCEEEEEECTTSTT------EEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEE
T ss_pred             cccceeeecccCCceEEEEecCCCCc------EEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEE
Confidence                3445567888999999987642      2345677889999999999888766655 6678999999999999887


Q ss_pred             Ee--CCCcEEEEeCCCCeEEEEEecC-CCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          510 GS--LDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       510 gs--~dg~i~iw~~~~~~~~~~~~~~-~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      ++  .|+.|+|||+++++++.++.++ +.|++++|+|+|++||+|+.|++|+|||+.
T Consensus       258 ~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~  314 (318)
T 4ggc_A          258 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF  314 (318)
T ss_dssp             EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred             EEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence            65  7999999999999999999875 569999999999999999999999999974

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=4.6e-35  Score=303.74  Aligned_cols=269  Identities=28%  Similarity=0.437  Sum_probs=242.6

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEee
Q 008467          278 VTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF  356 (564)
Q Consensus       278 V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~  356 (564)
                      ++++.+  ++++|++|+.||.|++|+.. +.....+.+|.++|++++|+|++ +|++|+.||+|++||+.+++....+..
T Consensus       125 ~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~  201 (464)
T 3v7d_B          125 ITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEG  201 (464)
T ss_dssp             EEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             EEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECC
Confidence            566666  56799999999999999965 56777889999999999999988 999999999999999999999999999


Q ss_pred             cccCeEEEEcC---CCceEEEEeCCCeEEEEEcCCCce-----------------------eeEecCCCcceEEEEECCC
Q 008467          357 HSGPTLDVDWR---NNVSFATSSTDNMIYVCKIGENRP-----------------------IKTFAGHQGEVNCVKWDPT  410 (564)
Q Consensus       357 ~~~~~~~~~~~---~~~~~~~~~~d~~i~~~~~~~~~~-----------------------~~~~~~h~~~i~~v~~~~~  410 (564)
                      |...+.++.|.   +...+++++.|+.|++|++.....                       +..+.+|...|.++  +++
T Consensus       202 h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~  279 (464)
T 3v7d_B          202 HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGH  279 (464)
T ss_dssp             CSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEE
T ss_pred             CCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCC
Confidence            99999888875   447789999999999999986542                       45678899999887  567


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeC
Q 008467          411 GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG  490 (564)
Q Consensus       411 ~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  490 (564)
                      ++++++|+.||.|++||+.+++++..+.+|...|++++|+|++.         +|++|+.||+|++||+++++++..+.+
T Consensus       280 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~---------~l~sg~~dg~i~vwd~~~~~~~~~~~~  350 (464)
T 3v7d_B          280 GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK---------RCISASMDTTIRIWDLENGELMYTLQG  350 (464)
T ss_dssp             TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTT---------EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCC---------EEEEEeCCCcEEEEECCCCcEEEEEeC
Confidence            89999999999999999999999999999999999999999875         789999999999999999999999999


Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          491 HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       491 h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      |..+|.+++|+  +.+|++|+.||.|++||+.++.....+.....+..++|+++|++|++|+ ++.|.|||++
T Consensus       351 h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~  420 (464)
T 3v7d_B          351 HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLR  420 (464)
T ss_dssp             CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETT
T ss_pred             CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECC
Confidence            99999999997  5799999999999999999988877776666788899999999999998 8999999975

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=4.1e-35  Score=301.55  Aligned_cols=268  Identities=29%  Similarity=0.537  Sum_probs=241.1

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeE
Q 008467          274 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ  352 (564)
Q Consensus       274 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~  352 (564)
                      +...|++++|  ++++|++|+.||.|++|+.. +.....+.+|.++|.+++|  ++++|++|+.||+|++||+.+++...
T Consensus       132 ~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~  207 (435)
T 1p22_A          132 TSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLN  207 (435)
T ss_dssp             SCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEE
T ss_pred             CCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEE
Confidence            4567888887  78999999999999999975 5667788999999999999  68899999999999999999999999


Q ss_pred             EEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCcee---eEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 008467          353 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPI---KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK  429 (564)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~---~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~  429 (564)
                      .+..|...+.++.|.+ ..+++++.|+.|++|++.....+   ..+.+|...|.+++|  ++++|++|+.||.|++||++
T Consensus       208 ~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~  284 (435)
T 1p22_A          208 TLIHHCEAVLHLRFNN-GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTS  284 (435)
T ss_dssp             EECCCCSCEEEEECCT-TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT
T ss_pred             EEcCCCCcEEEEEEcC-CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECC
Confidence            9999999999999975 48899999999999999877655   678899999999999  78999999999999999999


Q ss_pred             CCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEE
Q 008467          430 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS  509 (564)
Q Consensus       430 ~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~las  509 (564)
                      +++.+..+..|...|.++.|.+.           ++++|+.||+|++||+++++++..+.+|..+|.+++|  ++.+|++
T Consensus       285 ~~~~~~~~~~~~~~v~~~~~~~~-----------~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~s  351 (435)
T 1p22_A          285 TCEFVRTLNGHKRGIACLQYRDR-----------LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVS  351 (435)
T ss_dssp             TCCEEEEEECCSSCEEEEEEETT-----------EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEE
T ss_pred             cCcEEEEEcCCCCcEEEEEeCCC-----------EEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEE
Confidence            99999999999999999999532           7899999999999999999999999999999999999  7899999


Q ss_pred             EeCCCcEEEEeCCCCe---------EEEEEecC-CCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          510 GSLDKSMHIWSLKEGK---------IVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       510 gs~dg~i~iw~~~~~~---------~~~~~~~~-~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      |+.||.|++||+.++.         .+..+.++ +.|.+++|  +|++|++|+.||.|.|||+.
T Consensus       352 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~  413 (435)
T 1p22_A          352 GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFL  413 (435)
T ss_dssp             EETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC--
T ss_pred             EeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECC
Confidence            9999999999997665         67777654 56899999  78899999999999999985

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2.7e-36  Score=308.58  Aligned_cols=283  Identities=13%  Similarity=0.122  Sum_probs=240.2

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEECCCce-eEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEee
Q 008467          278 VTTLDWNGEGTLLATGSYDGQARIWSTNGDL-KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF  356 (564)
Q Consensus       278 V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~  356 (564)
                      +++++|+|+|++|++|+.||.+++|+..... ...+..| ..+....|++++++|++|+.|+.|++||+.++.....+..
T Consensus        59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  137 (420)
T 3vl1_A           59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQA  137 (420)
T ss_dssp             CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTS
T ss_pred             ccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeeccc
Confidence            5578999999999999999999999976432 2233444 4455557899999999999999999999999988888888


Q ss_pred             cccCeEEEEcCCC-ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeee
Q 008467          357 HSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH  435 (564)
Q Consensus       357 ~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~  435 (564)
                      |...+.++.|.++ ..+++++.|+.|++|++...+.+..+.+|.+.|.+++|+|++++|++|+.|++|++||+++++.+.
T Consensus       138 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~  217 (420)
T 3vl1_A          138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIH  217 (420)
T ss_dssp             SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEE
T ss_pred             ccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeE
Confidence            9999999999754 578899999999999999999999999999999999999999999999999999999999999888


Q ss_pred             eccc---ccccEEEEEEccCCC-------------CCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEe-CCCCCEEEE
Q 008467          436 DLRE---HSKEIYTIRWSPTGS-------------GTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN-GHREPVYSL  498 (564)
Q Consensus       436 ~~~~---~~~~i~~i~~~p~~~-------------~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~i~~~  498 (564)
                      .+..   |...+.++.|.|.+.             ...+|+. .+|++|+.||.|++||+++++.+..+. .|..+|+++
T Consensus       218 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~  296 (420)
T 3vl1_A          218 TFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSL  296 (420)
T ss_dssp             EECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT-EEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEE
T ss_pred             EeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC-CEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeE
Confidence            8774   667788888866432             1233444 368899999999999999998877764 578899999


Q ss_pred             EEcCCCC-EEEEEeCCCcEEEEeCCCCe-EEEEEec--CCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          499 AFSPTGE-YLASGSLDKSMHIWSLKEGK-IVKTYTG--NGGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       499 ~~spdg~-~lasgs~dg~i~iw~~~~~~-~~~~~~~--~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      +|+|+++ +|++|+.||.|++||+++++ .+..+..  ...+..+.| ++|++|++++.|+.|.|||++
T Consensus       297 ~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~  364 (420)
T 3vl1_A          297 TVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIIS  364 (420)
T ss_dssp             EECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEEC
T ss_pred             EEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEecc
Confidence            9999999 99999999999999999875 3666654  345677755 588999999999999999975

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-37  Score=313.34  Aligned_cols=298  Identities=12%  Similarity=0.136  Sum_probs=237.9

Q ss_pred             ccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEe-------------ec---cccccCCCCeE
Q 008467          216 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKH-------------VK---GRTNEKSKDVT  279 (564)
Q Consensus       216 ~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~-------------~~---~~~~~~~~~V~  279 (564)
                      ...|.+++|||||+++||+|.|++|+  +...+....   .++..+..+..             ..   .....+...|+
T Consensus        15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~---gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~   89 (588)
T 2j04_A           15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDIN---CNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPR   89 (588)
T ss_dssp             SSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCS---SBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEE
T ss_pred             hccEEEEEECCCCCEEEEEcCCceee--cccccceec---CCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEE
Confidence            47899999999999999999999999  655444331   11111111100             00   01113357799


Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCC-----CEEEEEeCCCCCEEEEeeCCCcEEEEECCCcce----
Q 008467          280 TLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKG-----PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW----  350 (564)
Q Consensus       280 ~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~-----~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~----  350 (564)
                      +++|||+|++||+++.||.|++|+..+ +...+. |..     .|.+++|||+|++|++|+.||+|+|||+.++..    
T Consensus        90 ~vawSPdG~~LAs~s~dg~V~iwd~~~-~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~  167 (588)
T 2j04_A           90 VCKPSPIDDWMAVLSNNGNVSVFKDNK-MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPE  167 (588)
T ss_dssp             EEEECSSSSCEEEEETTSCEEEEETTE-EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCC
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEeCCc-eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcccccc
Confidence            999999999999999999999999766 555566 666     499999999999999999999999999998753    


Q ss_pred             ---eEEE----eecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCce---eeEe-cCCCcceEEEEECCCCCEEEEEeC
Q 008467          351 ---KQQF----EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRP---IKTF-AGHQGEVNCVKWDPTGSLLASCSD  419 (564)
Q Consensus       351 ---~~~~----~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~---~~~~-~~h~~~i~~v~~~~~~~~las~s~  419 (564)
                         ...+    ..|...+.+++|.++. +++++.|+++++|++..+..   .+++ .+|...|.+++|+  ++.||+++ 
T Consensus       168 ~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-  243 (588)
T 2j04_A          168 FYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-  243 (588)
T ss_dssp             CEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-
T ss_pred             ceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-
Confidence               4555    4455789999999988 99999999999999988763   3456 4888999999999  68999987 


Q ss_pred             CCcEEEEeCCCCeeeeecccccccEEEEEE--ccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEE
Q 008467          420 DVTAKIWNMKQDKYVHDLREHSKEIYTIRW--SPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYS  497 (564)
Q Consensus       420 dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~--~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~  497 (564)
                      +++|++||+.+++......+|...++.+.|  +|++.         .|++++.||+ ++|...                .
T Consensus       244 ~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~---------~La~a~edG~-klw~~d----------------~  297 (588)
T 2j04_A          244 PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKEST---------ILLMSNKTSY-KVLLED----------------E  297 (588)
T ss_dssp             SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCE---------EEEECSSCEE-EEEESS----------------S
T ss_pred             CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCC---------EEEEEcCCCC-EEEeec----------------c
Confidence            699999999988874444479999999999  88764         7899999999 999977                2


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEc
Q 008467          498 LAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFA  553 (564)
Q Consensus       498 ~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~  553 (564)
                      ++|+||+..+|+.  |+++++|+...+. ...+.+...|++++|+|||+.+|+++.
T Consensus       298 ~~~spd~~l~a~~--d~~v~lW~~~g~~-l~~~~~~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          298 LHVTADNIIAPYL--EKKFKKWSTIWNE-FNNYETTLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             EEEECCCSSHHHH--HHHHHHTTTTTTS-SSSSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred             EEECCCceEEEEc--CCEEEEEECCCCc-eeeeccceEEEEEEECCCCCEEEEEEe
Confidence            6699999998875  9999999986554 334455556899999999999998864

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-35  Score=296.82  Aligned_cols=255  Identities=25%  Similarity=0.404  Sum_probs=211.0

Q ss_pred             eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC--
Q 008467          209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE--  286 (564)
Q Consensus       209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~--  286 (564)
                      +.++.+|...|++++|+|++++||+|+.||.|+||++....           .......    ..|...|++++|+++  
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-----------~~~~~~~----~~h~~~v~~~~~~~~~~   68 (379)
T 3jrp_A            4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-----------HKLIDTL----TGHEGPVWRVDWAHPKF   68 (379)
T ss_dssp             -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-----------EEEEEEE----CCCSSCEEEEEECCGGG
T ss_pred             cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-----------ceeeeEe----cCCCCcEEEEEeCCCCC
Confidence            35678999999999999999999999999999999986321           0111112    245678999999987  


Q ss_pred             CCEEEEEeCCCeEEEEECCCc---eeEeecCCCCCEEEEEeCCC--CCEEEEeeCCCcEEEEECCCcceeEEEeecccCe
Q 008467          287 GTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT  361 (564)
Q Consensus       287 g~~l~sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~  361 (564)
                      +.+|++|+.||.|++|+....   ....+..|..+|.+++|+|+  +.+|++++.|++|++||++++...          
T Consensus        69 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~----------  138 (379)
T 3jrp_A           69 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT----------  138 (379)
T ss_dssp             CSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCC----------
T ss_pred             CCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCce----------
Confidence            999999999999999997654   55677889999999999999  999999999999999999765321          


Q ss_pred             EEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECC-------------CCCEEEEEeCCCcEEEEeC
Q 008467          362 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-------------TGSLLASCSDDVTAKIWNM  428 (564)
Q Consensus       362 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~-------------~~~~las~s~dg~i~iwd~  428 (564)
                                                   ....+.+|...|.+++|+|             ++.+|++|+.||.|++||+
T Consensus       139 -----------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~  189 (379)
T 3jrp_A          139 -----------------------------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY  189 (379)
T ss_dssp             -----------------------------CEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEE
T ss_pred             -----------------------------eeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEe
Confidence                                         1223457888999999999             6999999999999999998


Q ss_pred             CCCe----eeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-----EEEEEeCCCCCEEEEE
Q 008467          429 KQDK----YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-----LLYSLNGHREPVYSLA  499 (564)
Q Consensus       429 ~~~~----~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-----~~~~~~~h~~~i~~~~  499 (564)
                      +++.    ....+..|...|.+++|+|++..      ..+|++++.||.|++||++++.     .+.....|..+|++++
T Consensus       190 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~  263 (379)
T 3jrp_A          190 NSDAQTYVLESTLEGHSDWVRDVAWSPTVLL------RSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRAS  263 (379)
T ss_dssp             ETTTTEEEEEEEECCCSSCEEEEEECCCCSS------SEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEE
T ss_pred             cCCCcceeeEEEEecccCcEeEEEECCCCCC------CCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEE
Confidence            7654    45677889999999999998310      1379999999999999998763     2222344888999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCC
Q 008467          500 FSPTGEYLASGSLDKSMHIWSLKE  523 (564)
Q Consensus       500 ~spdg~~lasgs~dg~i~iw~~~~  523 (564)
                      |+|+|++|++++.||.|++|++..
T Consensus       264 ~s~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          264 WSLSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             ECSSSCCEEEEESSSSEEEEEEEE
T ss_pred             EcCCCCEEEEecCCCcEEEEeCCC
Confidence            999999999999999999999874

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-36  Score=314.34  Aligned_cols=293  Identities=12%  Similarity=0.089  Sum_probs=218.6

Q ss_pred             EccCCccceEEEEECCC------CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEEC
Q 008467          211 ILEGHTSEVCACAWSPA------GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN  284 (564)
Q Consensus       211 ~l~~h~~~V~~~~~sp~------~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s  284 (564)
                      .+.+|.+.|.+++|+|+      +.+||+|+.||+|+||++.++......      .............+...|++++|+
T Consensus       202 ~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~------~~~~~~p~~~l~~h~~~v~sv~~s  275 (524)
T 2j04_B          202 TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHV------FKMCEKPSLTLSLADSLITTFDFL  275 (524)
T ss_dssp             EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSE------EECCCSCSEEECCTTTCEEEEEES
T ss_pred             EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccc------ceeecCceEEEEcCCCCEEEEEec
Confidence            45678899999999997      579999999999999999765421100      000000000122456789999999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCC--ceeEeecCCCCCEEEE--EeCCCC-CEEEEeeCCCcEEEEECCCcceeEEEeeccc
Q 008467          285 GEGTLLATGSYDGQARIWSTNG--DLKCTLSKHKGPIFSL--KWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG  359 (564)
Q Consensus       285 ~~g~~l~sg~~dg~i~vw~~~~--~~~~~~~~h~~~V~~l--~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~  359 (564)
                      ++ ..|++|+.||+|++||...  .....+.+|..+|.++  .|+|++ .+|+|||.|++|+|||+++++....+..|..
T Consensus       276 ~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~  354 (524)
T 2j04_B          276 SP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFR  354 (524)
T ss_dssp             SS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECS
T ss_pred             CC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccc
Confidence            86 4899999999999999863  3345688999999999  678888 8999999999999999998887766665543


Q ss_pred             --CeEEEEcCC-CceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeee
Q 008467          360 --PTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD  436 (564)
Q Consensus       360 --~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~  436 (564)
                        .+..+.|.+ ...+++++.|++|++|++.....+..+.+|.+.|++++|+|+|++|++|+.||+|++||.... .+..
T Consensus       355 ~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~  433 (524)
T 2j04_B          355 GSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHG  433 (524)
T ss_dssp             CCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTC
T ss_pred             cCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccc
Confidence              466788876 457888999999999999998888889999999999999999999999999999999998654 2222


Q ss_pred             ccc-----ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC-CCeEEEEEeCCCCCEEEEEEcCCC---CEE
Q 008467          437 LRE-----HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE-LGKLLYSLNGHREPVYSLAFSPTG---EYL  507 (564)
Q Consensus       437 ~~~-----~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~h~~~i~~~~~spdg---~~l  507 (564)
                      ++.     +...+++++|+|++.         ++ ...  +.+++|+.. ++.++..+.+|..+|++|+|+|++   .+|
T Consensus       434 ~~~~~~~~~~~~v~~v~~sp~g~---------~~-~~~--~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~l  501 (524)
T 2j04_B          434 IKNSSATQKSLRLWKWDYSIKDD---------KY-RID--SSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCY  501 (524)
T ss_dssp             C------CCCCEEEECBCCSSSC---------EE-EEC--CCCCCCC-------------CCCSCCCEEECCSTTTTTEE
T ss_pred             cccCccceeeeEEEEeccCCCCC---------eE-Ecc--CCceecccccCCcceeeecCCCceEEEEECCCCCCccHHH
Confidence            211     112467888888764         22 222  234455443 477788899999999999999996   499


Q ss_pred             EEEeCCCcEEEEeCCC
Q 008467          508 ASGSLDKSMHIWSLKE  523 (564)
Q Consensus       508 asgs~dg~i~iw~~~~  523 (564)
                      |+|+.||.|+||++..
T Consensus       502 Asg~~~g~vrlw~l~~  517 (524)
T 2j04_B          502 AFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             EEECTTSEEEEEECSC
T ss_pred             HhhccCceEEEEEccc
Confidence            9999999999999864

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=2.2e-35  Score=292.93  Aligned_cols=269  Identities=14%  Similarity=0.192  Sum_probs=236.7

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCce----eEeecCCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEEC-C
Q 008467          273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL----KCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDV-K  346 (564)
Q Consensus       273 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~----~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~-~  346 (564)
                      .|...|++++|+|++++|++|+.||.|++|+.....    ...+..|..+|.+++|+|+++ +|++|+.|+.|++||+ .
T Consensus         9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~   88 (342)
T 1yfq_A            9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG   88 (342)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEecc
Confidence            456789999999999999999999999999976433    455668999999999999999 9999999999999999 8


Q ss_pred             CcceeEEEee--cccCeEEEEcCCCceEEEEeCCCeEEEEEcCC---------CceeeEecCCCcceEEEEECCCCCEEE
Q 008467          347 TEEWKQQFEF--HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE---------NRPIKTFAGHQGEVNCVKWDPTGSLLA  415 (564)
Q Consensus       347 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~---------~~~~~~~~~h~~~i~~v~~~~~~~~la  415 (564)
                      ++.. ..+..  |...+.++.|.+...+++++.|+.|++|++..         .+++..+. |...|.+++|+|++  ++
T Consensus        89 ~~~~-~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~  164 (342)
T 1yfq_A           89 SPSF-QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LI  164 (342)
T ss_dssp             SSSE-EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EE
T ss_pred             CCce-EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EE
Confidence            7765 55666  88899999997777889999999999999987         66676666 88999999999987  89


Q ss_pred             EEeCCCcEEEEeCCC-Ce--eeeecccccccEEEEEEcc-CCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC------eEE
Q 008467          416 SCSDDVTAKIWNMKQ-DK--YVHDLREHSKEIYTIRWSP-TGSGTNNPNQQLILASASFDSTVKLWDVELG------KLL  485 (564)
Q Consensus       416 s~s~dg~i~iwd~~~-~~--~~~~~~~~~~~i~~i~~~p-~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~------~~~  485 (564)
                      +++.|+.|++||+++ ..  .......|...+.+++|+| ++.         ++++++.||.|++|+++..      +.+
T Consensus       165 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~---------~l~~~~~dg~i~i~~~~~~~~~~~~~~~  235 (342)
T 1yfq_A          165 VGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQE---------GYACSSIDGRVAVEFFDDQGDDYNSSKR  235 (342)
T ss_dssp             EEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGC---------EEEEEETTSEEEEEECCTTCCSTTCTTC
T ss_pred             EEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCC---------EEEEEecCCcEEEEEEcCCCcccccccc
Confidence            999999999999987 44  2334456788999999999 775         7899999999999999876      777


Q ss_pred             EEEeCCCC---------CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC--CCEEEEEEccCCCEEEEEEcC
Q 008467          486 YSLNGHRE---------PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN--GGIFEVCWNKEGDKIAACFAN  554 (564)
Q Consensus       486 ~~~~~h~~---------~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~--~~i~~~~w~~~g~~la~~~~~  554 (564)
                      ..+..|..         +|++++|+|++++|++|+.||.|++||+.+++++..+..+  ..|.+++  |+|++|++|+.|
T Consensus       236 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~D  313 (342)
T 1yfq_A          236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSD  313 (342)
T ss_dssp             EEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEEC
T ss_pred             eeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecC
Confidence            88888865         9999999999999999999999999999999999998764  5688999  999999999999


Q ss_pred             Cc
Q 008467          555 HT  556 (564)
Q Consensus       555 ~~  556 (564)
                      |.
T Consensus       314 g~  315 (342)
T 1yfq_A          314 DT  315 (342)
T ss_dssp             TH
T ss_pred             Cc
Confidence            97

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=6.3e-34  Score=279.24  Aligned_cols=279  Identities=24%  Similarity=0.458  Sum_probs=227.6

Q ss_pred             eEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCe
Q 008467          219 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQ  298 (564)
Q Consensus       219 V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~  298 (564)
                      .++++|||++ +||+| .|++|+|||+.+++..             +...  ...+...|++++|+|++++|++|+.||.
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~-------------~~~~--~~~~~~~V~~v~~~~~~~~l~sgs~Dg~   90 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDIL-------------QLLQ--MEQPGEYISSVAWIKEGNYLAVGTSSAE   90 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEE-------------EEEE--CCSTTCCEEEEEECTTSSEEEEEETTSE
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEE-------------EEEE--ecCCCCeEEEEEECCCCCEEEEEECCCc
Confidence            4679999986 77766 5999999999876521             1111  1235677999999999999999999999


Q ss_pred             EEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcc-eeEEEeecccCeEEEEcCC-CceEEEE
Q 008467          299 ARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE-WKQQFEFHSGPTLDVDWRN-NVSFATS  375 (564)
Q Consensus       299 i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~  375 (564)
                      |++|+.. ++....+.+|...+.++.+  ++..+++++.++.+++|+..+.. ....+..|...+..+.+.. ...++++
T Consensus        91 v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~  168 (318)
T 4ggc_A           91 VQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASG  168 (318)
T ss_dssp             EEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             EEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEE
Confidence            9999976 5667788899999887655  56799999999999999987654 4456777888888887754 4678899


Q ss_pred             eCCCeEEEEEcCCCc----eeeEecCCCcceEEEEECCCCCE---EEEEeCCCcEEEEeCCCCeeeeecccccccEEEEE
Q 008467          376 STDNMIYVCKIGENR----PIKTFAGHQGEVNCVKWDPTGSL---LASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR  448 (564)
Q Consensus       376 ~~d~~i~~~~~~~~~----~~~~~~~h~~~i~~v~~~~~~~~---las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~  448 (564)
                      +.|+.|++|++..++    .......|.+.|.+++++|++..   +++++.+++|++||.......... .+...+..+.
T Consensus       169 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~  247 (318)
T 4ggc_A          169 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-DAHSQVCSIL  247 (318)
T ss_dssp             ETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE-ECSSCEEEEE
T ss_pred             ecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc-cceeeeeeee
Confidence            999999999998654    34556678889999999998763   346778999999999887766543 4667899999


Q ss_pred             EccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 008467          449 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG  524 (564)
Q Consensus       449 ~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~  524 (564)
                      |+|.+.       ..++++|+.|+.|+|||+++++++.++.+|..+|++++|+|||++|||||.||+|+|||+.+.
T Consensus       248 ~~~~~~-------~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          248 WSPHYK-------ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             EETTTT-------EEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             eccccc-------ceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            999765       233444568999999999999999999999999999999999999999999999999998754

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=3e-34  Score=281.36  Aligned_cols=248  Identities=28%  Similarity=0.557  Sum_probs=224.6

Q ss_pred             ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCC-ceEEEEeCCCeEEEEE
Q 008467          307 DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCK  385 (564)
Q Consensus       307 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~  385 (564)
                      .+...+.+|..+|++++|+|++++|++|+.|+.|++||+.+++....+..|...+.++.|.++ ..+++++.|+.|++|+
T Consensus        14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd   93 (312)
T 4ery_A           14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD   93 (312)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEE
Confidence            455678899999999999999999999999999999999999999999999999999999755 5788999999999999


Q ss_pred             cCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEE
Q 008467          386 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLIL  465 (564)
Q Consensus       386 ~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l  465 (564)
                      +.+.+.+..+.+|...|.+++|+|++++|++|+.|++|++||+++++.+..+..|..+|.++.|+|++.         +|
T Consensus        94 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~---------~l  164 (312)
T 4ery_A           94 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS---------LI  164 (312)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS---------EE
T ss_pred             CCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCC---------EE
Confidence            999999999999999999999999999999999999999999999999999999999999999999875         78


Q ss_pred             EEEeCCCeEEEEeCCCCeEEEEEe-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCC----EEEEE
Q 008467          466 ASASFDSTVKLWDVELGKLLYSLN-GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG----IFEVC  540 (564)
Q Consensus       466 ~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~----i~~~~  540 (564)
                      ++|+.||.|++||+++++.+..+. .+..++..++|+|++++|++++.||.|++||+.+++.+..+.++..    +....
T Consensus       165 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  244 (312)
T 4ery_A          165 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF  244 (312)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEE
T ss_pred             EEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEE
Confidence            999999999999999998887764 4567899999999999999999999999999999999988876432    22333


Q ss_pred             EccCCCEEEEEEcCCcEEEEEee
Q 008467          541 WNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       541 w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      ..+++.+|++|+.|+.|.|||++
T Consensus       245 ~~~~~~~l~sg~~dg~i~vwd~~  267 (312)
T 4ery_A          245 SVTGGKWIVSGSEDNLVYIWNLQ  267 (312)
T ss_dssp             ECSSSCEEEECCTTSCEEEEETT
T ss_pred             EeCCCcEEEEECCCCEEEEEECC
Confidence            44678999999999999999975

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=4.1e-34  Score=295.00  Aligned_cols=279  Identities=24%  Similarity=0.444  Sum_probs=247.5

Q ss_pred             ceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC
Q 008467          208 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG  287 (564)
Q Consensus       208 ~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g  287 (564)
                      .+..+.+|...|.+++|+  +.+|++|+.||+|++|++.++..             ....    ..+...|.+++|+  +
T Consensus       151 ~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~-------------~~~~----~~h~~~v~~~~~~--~  209 (445)
T 2ovr_B          151 CLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGEC-------------IHTL----YGHTSTVRCMHLH--E  209 (445)
T ss_dssp             EEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEE-------------EEEE----CCCSSCEEEEEEE--T
T ss_pred             EEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcE-------------EEEE----CCCCCcEEEEEec--C
Confidence            356788999999999998  67999999999999999976531             1111    2356789999995  5


Q ss_pred             CEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEc
Q 008467          288 TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW  366 (564)
Q Consensus       288 ~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  366 (564)
                      ..+++|+.||.|++|+.. +.....+.+|..+|.++.|  ++.++++|+.|+.|++||+++++....+..|...+.++.|
T Consensus       210 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  287 (445)
T 2ovr_B          210 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF  287 (445)
T ss_dssp             TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE
T ss_pred             CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE
Confidence            789999999999999975 5667788899999999999  6789999999999999999999999999999999999999


Q ss_pred             CCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeeccc---cccc
Q 008467          367 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE---HSKE  443 (564)
Q Consensus       367 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~---~~~~  443 (564)
                       +...+++++.|+.|++|++.+++++..+.+|...+.++.++  +++|++|+.||.|++||+++++.+..+..   |...
T Consensus       288 -~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  364 (445)
T 2ovr_B          288 -DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSA  364 (445)
T ss_dssp             -CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSC
T ss_pred             -CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCC
Confidence             67788999999999999999999999999999999998874  67999999999999999999998888876   8889


Q ss_pred             EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEE-----eCCCCCEEEEEEcCCCCEEEEEeCCCc---
Q 008467          444 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-----NGHREPVYSLAFSPTGEYLASGSLDKS---  515 (564)
Q Consensus       444 i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-----~~h~~~i~~~~~spdg~~lasgs~dg~---  515 (564)
                      |++++|++.           +|++|+.||.|++||+.+++.+..+     .+|..+|++++|+|+|.+||+|+.||+   
T Consensus       365 v~~~~~~~~-----------~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~  433 (445)
T 2ovr_B          365 VTCLQFNKN-----------FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEET  433 (445)
T ss_dssp             EEEEEECSS-----------EEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCC
T ss_pred             EEEEEECCC-----------EEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCcc
Confidence            999999642           7999999999999999999998888     467889999999999999999999998   


Q ss_pred             -EEEEeCCC
Q 008467          516 -MHIWSLKE  523 (564)
Q Consensus       516 -i~iw~~~~  523 (564)
                       |.|||+..
T Consensus       434 ~l~v~df~~  442 (445)
T 2ovr_B          434 KLLVLDFDV  442 (445)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEECCC
Confidence             99999874

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=6.7e-35  Score=292.34  Aligned_cols=276  Identities=14%  Similarity=0.174  Sum_probs=216.4

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCC-------eEEEEECCCce-----------eEeecCCCCCEEEEEeCCCCCEEEEe--
Q 008467          275 SKDVTTLDWNGEGTLLATGSYDG-------QARIWSTNGDL-----------KCTLSKHKGPIFSLKWNKKGDYLLTG--  334 (564)
Q Consensus       275 ~~~V~~l~~s~~g~~l~sg~~dg-------~i~vw~~~~~~-----------~~~~~~h~~~V~~l~~~~~~~~l~s~--  334 (564)
                      ..+|++++|+|||++|++|+.+.       .|++|+.....           ...+..|...|.+++++  ++.+++|  
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~   91 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN   91 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence            35799999999999999998643       59999865321           12467888889888765  4566655  


Q ss_pred             ---------eCCCcEEEEECCCcceeEEE----ee-----cccCeEEEEcCCCce-E--EEEeCCCeEEEEEcCCCceee
Q 008467          335 ---------SCDKTAIVWDVKTEEWKQQF----EF-----HSGPTLDVDWRNNVS-F--ATSSTDNMIYVCKIGENRPIK  393 (564)
Q Consensus       335 ---------s~D~~v~iwd~~~~~~~~~~----~~-----~~~~~~~~~~~~~~~-~--~~~~~d~~i~~~~~~~~~~~~  393 (564)
                               +.|+++++|++.+......+    ..     +...+..+.|.++.. +  ++++.|++|++|++.+.+++.
T Consensus        92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~  171 (365)
T 4h5i_A           92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF  171 (365)
T ss_dssp             CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred             CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence                     45788999998654322111    11     112355677766543 3  345578999999999998888


Q ss_pred             EecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeee--ecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC
Q 008467          394 TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH--DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD  471 (564)
Q Consensus       394 ~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~--~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d  471 (564)
                      .+. |.+.|.+++|+|+|++|++++.++ +++|+..++..+.  ....|...|.+++|+|++.         ++++++.|
T Consensus       172 ~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~---------~l~~~s~d  240 (365)
T 4h5i_A          172 EIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARKTDFDKNWSLSKINFIADDT---------VLIAASLK  240 (365)
T ss_dssp             EEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEECCCCTTEEEEEEEEEETTE---------EEEEEEES
T ss_pred             EeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCcceeeeecCCCCCCEEEEEEcCCCC---------EEEEEecC
Confidence            875 778899999999999999998665 5666666655543  3456888999999999875         68888888


Q ss_pred             C----eEEEEeCCCCeE----EEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEE-ec-CCCEEEEEE
Q 008467          472 S----TVKLWDVELGKL----LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY-TG-NGGIFEVCW  541 (564)
Q Consensus       472 g----~i~iwd~~~~~~----~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~-~~-~~~i~~~~w  541 (564)
                      +    .+++|++..+..    ...+.+|..+|++++|||||++||+|+.|++|+|||+++++++.++ .+ ...|++++|
T Consensus       241 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~f  320 (365)
T 4h5i_A          241 KGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTI  320 (365)
T ss_dssp             SSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEE
T ss_pred             CcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEE
Confidence            7    688999876653    3467889999999999999999999999999999999999999886 44 457999999


Q ss_pred             ccCCCEEEEEEcCCcEEEEEee
Q 008467          542 NKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       542 ~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      +|||++||+|+.|++|+|||+.
T Consensus       321 Spdg~~laS~S~D~tvrvw~ip  342 (365)
T 4h5i_A          321 SPDSTYVASVSAANTIHIIKLP  342 (365)
T ss_dssp             CTTSCEEEEEETTSEEEEEECC
T ss_pred             CCCCCEEEEEeCCCeEEEEEcC
Confidence            9999999999999999999984

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.6e-34  Score=313.26  Aligned_cols=243  Identities=26%  Similarity=0.406  Sum_probs=214.0

Q ss_pred             ccCCCCeEEEEECCCC-CEEEEEeCCCeEEEEECCC------ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEE
Q 008467          272 NEKSKDVTTLDWNGEG-TLLATGSYDGQARIWSTNG------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD  344 (564)
Q Consensus       272 ~~~~~~V~~l~~s~~g-~~l~sg~~dg~i~vw~~~~------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd  344 (564)
                      ..|...|++++|+|++ .+|+||+.||.|++|+...      .....+.+|...|.+++|+|++++|++|+.|++|++||
T Consensus       379 ~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd  458 (694)
T 3dm0_A          379 RAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWD  458 (694)
T ss_dssp             ECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             ccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            4578899999999864 7999999999999999753      23457889999999999999999999999999999999


Q ss_pred             CCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEE
Q 008467          345 VKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK  424 (564)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~  424 (564)
                      +.++..                                         +..+.+|...|.+++|+|++++|+||+.|++|+
T Consensus       459 ~~~~~~-----------------------------------------~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~  497 (694)
T 3dm0_A          459 LAAGVS-----------------------------------------TRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIK  497 (694)
T ss_dssp             TTTTEE-----------------------------------------EEEEECCSSCEEEEEECTTSSCEEEEETTSCEE
T ss_pred             CCCCcc-----------------------------------------eeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEE
Confidence            977542                                         345678999999999999999999999999999


Q ss_pred             EEeCCCCeeeee---cccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEc
Q 008467          425 IWNMKQDKYVHD---LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFS  501 (564)
Q Consensus       425 iwd~~~~~~~~~---~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~s  501 (564)
                      |||.........   ..+|...|.+++|+|++..       .+|++|+.|++|++||++++++...+.+|...|++++|+
T Consensus       498 iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-------~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~s  570 (694)
T 3dm0_A          498 LWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQ-------PTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVS  570 (694)
T ss_dssp             EECTTSCEEEEECSSTTSCSSCEEEEEECSCSSS-------CEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred             EEECCCCcceeeccCCCCCCCcEEEEEEeCCCCc-------ceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEe
Confidence            999876543322   2468889999999997631       278999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          502 PTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       502 pdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      |+|++|++|+.||.|++||+.+++.+..+..+..|..++|+|++..|+++.. +.|.|||++
T Consensus       571 pdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-~~i~iwd~~  631 (694)
T 3dm0_A          571 PDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATE-HGIKIWDLE  631 (694)
T ss_dssp             TTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEET-TEEEEEETT
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEcC-CCEEEEECC
Confidence            9999999999999999999999999888888888999999999999988864 569999975

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-33  Score=291.98  Aligned_cols=299  Identities=13%  Similarity=0.054  Sum_probs=231.2

Q ss_pred             cceEEEEECCCCCEEEEEECCCcEEEEeCCCCC---CCCCCCCCCc------e-----------EEE-----EE------
Q 008467          217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGT---SNGGAQNGPL------N-----------VLV-----LK------  265 (564)
Q Consensus       217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~---~~~~~~~~~~------~-----------~~~-----~~------  265 (564)
                      .++.+++|+|+|++|+++ .++.|++|++.++.   ..........      .           ...     .+      
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            568899999999976665 57899999998876   2111000000      0           000     00      


Q ss_pred             ---------eeccccccCCCCeEEEEECCCCCEE-EEEeCCCeEEEEECC---CceeEeec--CCCCCEEEEEeCCCCCE
Q 008467          266 ---------HVKGRTNEKSKDVTTLDWNGEGTLL-ATGSYDGQARIWSTN---GDLKCTLS--KHKGPIFSLKWNKKGDY  330 (564)
Q Consensus       266 ---------~~~~~~~~~~~~V~~l~~s~~g~~l-~sg~~dg~i~vw~~~---~~~~~~~~--~h~~~V~~l~~~~~~~~  330 (564)
                               ........+...|++++|+|+|++| ++|+.||.|++|+..   +.....+.  .|...|.+++|+|++++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  163 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT  163 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence                     0000011344579999999999996 899999999999976   44555554  67789999999999999


Q ss_pred             EEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC
Q 008467          331 LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT  410 (564)
Q Consensus       331 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~  410 (564)
                      |++|+.|+.+++|++.++....                                     .+...+.+|.+.|++++|+|+
T Consensus       164 l~~~~~~g~v~~~~~~~~~~~~-------------------------------------~~~~~~~~h~~~v~~~~~sp~  206 (450)
T 2vdu_B          164 VIIADKFGDVYSIDINSIPEEK-------------------------------------FTQEPILGHVSMLTDVHLIKD  206 (450)
T ss_dssp             EEEEETTSEEEEEETTSCCCSS-------------------------------------CCCCCSEECSSCEEEEEEEEC
T ss_pred             EEEEeCCCcEEEEecCCccccc-------------------------------------ccceeeecccCceEEEEEcCC
Confidence            9999999999999987654211                                     023356679999999999999


Q ss_pred             ---CCEEEEEeCCCcEEEEeCCCCeeeee-cccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE
Q 008467          411 ---GSLLASCSDDVTAKIWNMKQDKYVHD-LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY  486 (564)
Q Consensus       411 ---~~~las~s~dg~i~iwd~~~~~~~~~-~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~  486 (564)
                         +++|++|+.|++|++||+.++..+.. +.+|...|.+++|+ ++.         +|++|+.|++|++||+++++++.
T Consensus       207 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~---------~l~s~~~d~~v~vwd~~~~~~~~  276 (450)
T 2vdu_B          207 SDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDY---------LLLSAGGDDKIFAWDWKTGKNLS  276 (450)
T ss_dssp             TTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STT---------EEEEEESSSEEEEEETTTCCEEE
T ss_pred             CCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCC---------EEEEEeCCCeEEEEECCCCcEee
Confidence               99999999999999999999888777 56899999999999 765         79999999999999999999888


Q ss_pred             EEeC-------------------------CCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeC--CCC---eEEEEEecCCC
Q 008467          487 SLNG-------------------------HREPVYSLAFSPTGEYLASGS-LDKSMHIWSL--KEG---KIVKTYTGNGG  535 (564)
Q Consensus       487 ~~~~-------------------------h~~~i~~~~~spdg~~lasgs-~dg~i~iw~~--~~~---~~~~~~~~~~~  535 (564)
                      .+..                         ....|.+++|+|++++|++++ .|+.|+||++  .++   +.+..+..++.
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~  356 (450)
T 2vdu_B          277 TFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYN  356 (450)
T ss_dssp             EEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSC
T ss_pred             eecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccCCc
Confidence            8763                         235799999999999999999 8999999999  665   67777877788


Q ss_pred             EEEEEEccCCCEEEEEEc------CCcEEEEEee
Q 008467          536 IFEVCWNKEGDKIAACFA------NHTVCVLDFR  563 (564)
Q Consensus       536 i~~~~w~~~g~~la~~~~------~~~v~v~~~~  563 (564)
                      |.+++|+|++-+++++..      +..|.||.++
T Consensus       357 v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~  390 (450)
T 2vdu_B          357 VISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN  390 (450)
T ss_dssp             EEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred             eEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence            999999996544444332      3447888764

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=9.2e-34  Score=288.04  Aligned_cols=281  Identities=16%  Similarity=0.293  Sum_probs=232.8

Q ss_pred             cCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCce-eEee-------------cCCCCCEEEEEeCC-CCCEEEEeeC
Q 008467          273 EKSKDVTTLDWNG-EGTLLATGSYDGQARIWSTNGDL-KCTL-------------SKHKGPIFSLKWNK-KGDYLLTGSC  336 (564)
Q Consensus       273 ~~~~~V~~l~~s~-~g~~l~sg~~dg~i~vw~~~~~~-~~~~-------------~~h~~~V~~l~~~~-~~~~l~s~s~  336 (564)
                      .|...|++++|+| ++++|++|+.||.|++|+..... ...+             .+|..+|.+++|+| ++.+|++++.
T Consensus        41 ~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  120 (408)
T 4a11_B           41 IHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF  120 (408)
T ss_dssp             CCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEET
T ss_pred             ccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeC
Confidence            3568899999999 99999999999999999976432 1111             25999999999999 7789999999


Q ss_pred             CCcEEEEECCCcceeEEEeecccCeEEEEcCC----CceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCC
Q 008467          337 DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN----NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS  412 (564)
Q Consensus       337 D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~  412 (564)
                      |+.|++||+.++.....+. +...+..+.|..    ...+++++.++.|++|++....++..+.+|.+.|.+++|+|+++
T Consensus       121 d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~  199 (408)
T 4a11_B          121 DKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYD  199 (408)
T ss_dssp             TSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCT
T ss_pred             CCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCC
Confidence            9999999999998877766 455666666653    33788999999999999999999999999999999999999998


Q ss_pred             -EEEEEeCCCcEEEEeCCCCe-eeeec---------------ccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEE
Q 008467          413 -LLASCSDDVTAKIWNMKQDK-YVHDL---------------REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVK  475 (564)
Q Consensus       413 -~las~s~dg~i~iwd~~~~~-~~~~~---------------~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~  475 (564)
                       +|++|+.||.|++||+++.. ++..+               ..|...|.+++|+|++.         +|++++.||.|+
T Consensus       200 ~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------~l~~~~~dg~i~  270 (408)
T 4a11_B          200 YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL---------HLLTVGTDNRMR  270 (408)
T ss_dssp             TEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS---------EEEEEETTSCEE
T ss_pred             cEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCC---------EEEEecCCCeEE
Confidence             58999999999999997664 33333               56889999999999875         789999999999


Q ss_pred             EEeCCCCeEEEEEeCCC-----CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC-CCEEEEEEccCCCEEE
Q 008467          476 LWDVELGKLLYSLNGHR-----EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIA  549 (564)
Q Consensus       476 iwd~~~~~~~~~~~~h~-----~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~-~~i~~~~w~~~g~~la  549 (564)
                      +||+.+++....+..+.     ..+........+..+++++.|+.|++||+.+++.+..+.++ ..|.+++|+|+|++|+
T Consensus       271 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  350 (408)
T 4a11_B          271 LWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELY  350 (408)
T ss_dssp             EEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEE
T ss_pred             EEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEE
Confidence            99999887654443221     12222223344566777788999999999999999998854 5799999999999999


Q ss_pred             EEEcCCcEEEEEee
Q 008467          550 ACFANHTVCVLDFR  563 (564)
Q Consensus       550 ~~~~~~~v~v~~~~  563 (564)
                      +|+.||.|.|||++
T Consensus       351 s~~~dg~i~iw~~~  364 (408)
T 4a11_B          351 SGSRDCNILAWVPS  364 (408)
T ss_dssp             EEETTSCEEEEEEC
T ss_pred             EECCCCeEEEEeCC
Confidence            99999999999986

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=5.9e-34  Score=285.97  Aligned_cols=241  Identities=20%  Similarity=0.385  Sum_probs=213.6

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCc---eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcce
Q 008467          274 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW  350 (564)
Q Consensus       274 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~  350 (564)
                      +...|++++|+|++++|++|+.||.|++|+....   ....+.+|..+|.+++|+|++++|++++.|++|++||+.++++
T Consensus         7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~   86 (372)
T 1k8k_C            7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW   86 (372)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred             cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCee
Confidence            4578999999999999999999999999998765   6778889999999999999999999999999999999877643


Q ss_pred             eEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 008467          351 KQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ  430 (564)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~  430 (564)
                      ...                                       ..+.+|...|.+++|+|++++|++|+.|+.|++||+..
T Consensus        87 ~~~---------------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~  127 (372)
T 1k8k_C           87 KPT---------------------------------------LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQ  127 (372)
T ss_dssp             EEE---------------------------------------EECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEET
T ss_pred             eee---------------------------------------EEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecC
Confidence            221                                       22356888999999999999999999999999999987


Q ss_pred             Cee----eeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeC------------------CCCeEEEEE
Q 008467          431 DKY----VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV------------------ELGKLLYSL  488 (564)
Q Consensus       431 ~~~----~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~------------------~~~~~~~~~  488 (564)
                      ...    ......|...|.+++|+|++.         +|++++.||.|++||+                  ..++.+..+
T Consensus       128 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (372)
T 1k8k_C          128 ENDWWVCKHIKKPIRSTVLSLDWHPNSV---------LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES  198 (372)
T ss_dssp             TTTEEEEEEECTTCCSCEEEEEECTTSS---------EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC
T ss_pred             CCcceeeeeeecccCCCeeEEEEcCCCC---------EEEEEcCCCCEEEEEcccccccccccccccccccchhhheEec
Confidence            652    233367889999999999875         7899999999999995                  467888899


Q ss_pred             eCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCC-CEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          489 NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       489 ~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~-~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      .+|..+|.+++|+|++++|++++.||.|++||+++++.+..+..+. .|..++|+|+|++|++| .|+.|.||+++
T Consensus       199 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~  273 (372)
T 1k8k_C          199 SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYD  273 (372)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEE
T ss_pred             CCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEcc
Confidence            9999999999999999999999999999999999999998887654 79999999999999988 89999999986

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=8.6e-35  Score=299.09  Aligned_cols=264  Identities=20%  Similarity=0.295  Sum_probs=202.6

Q ss_pred             eEccCCccceEEEEECC-CCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467          210 TILEGHTSEVCACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  288 (564)
Q Consensus       210 ~~l~~h~~~V~~~~~sp-~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  288 (564)
                      ..+.+|.+.|++++|+| ++.+|+||+.||+|+|||+.++..           ..+.    ........+.+++|+|++.
T Consensus       158 ~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~-----------~~~~----~~~~~~~~~~~~~~~~~~~  222 (435)
T 4e54_B          158 IKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL-----------RVFA----SSDTINIWFCSLDVSASSR  222 (435)
T ss_dssp             ECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEE-----------EEEE----CCSSCSCCCCCEEEETTTT
T ss_pred             EEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCce-----------eEEe----ccCCCCccEEEEEECCCCC
Confidence            34578999999999999 689999999999999999864321           0111    1112334688999999999


Q ss_pred             EEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcC
Q 008467          289 LLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR  367 (564)
Q Consensus       289 ~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  367 (564)
                      +|++|+.||.|++|+..+.....+.+|..+|.+++|+|++. +|++|+.|++|++||+++.....               
T Consensus       223 ~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~---------------  287 (435)
T 4e54_B          223 MVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA---------------  287 (435)
T ss_dssp             EEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSS---------------
T ss_pred             EEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccc---------------
Confidence            99999999999999999888888999999999999999986 67899999999999998754221               


Q ss_pred             CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccc-----
Q 008467          368 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK-----  442 (564)
Q Consensus       368 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~-----  442 (564)
                                             .+....+|...|++++|+|+|++|++|+.||+|+|||+.++.....+..|..     
T Consensus       288 -----------------------~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~  344 (435)
T 4e54_B          288 -----------------------SFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQH  344 (435)
T ss_dssp             -----------------------CCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSS
T ss_pred             -----------------------eEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccccccc
Confidence                                   1123357899999999999999999999999999999999887776665542     


Q ss_pred             -cEEEEEEccCCCCC---CCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEe-CCCCCEEEE-EEcCCCCEEEEEeCCCcE
Q 008467          443 -EIYTIRWSPTGSGT---NNPNQQLILASASFDSTVKLWDVELGKLLYSLN-GHREPVYSL-AFSPTGEYLASGSLDKSM  516 (564)
Q Consensus       443 -~i~~i~~~p~~~~~---~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~i~~~-~~spdg~~lasgs~dg~i  516 (564)
                       .+....|+|.+...   ..++...+++++..++.|++||+.+++++..+. +|...|.++ +|||+|++||+|+ |+.|
T Consensus       345 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i  423 (435)
T 4e54_B          345 LTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHI  423 (435)
T ss_dssp             SCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEE
T ss_pred             ceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcE
Confidence             23345666655310   011111222333345689999999999988874 678888887 6999999999886 7899


Q ss_pred             EEEeCCCCeEE
Q 008467          517 HIWSLKEGKIV  527 (564)
Q Consensus       517 ~iw~~~~~~~~  527 (564)
                      +||++++|+..
T Consensus       424 ~iW~~~~gk~r  434 (435)
T 4e54_B          424 LIWSQQEARTR  434 (435)
T ss_dssp             EECCCC-----
T ss_pred             EEEECCcCeee
Confidence            99999988753

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.5e-34  Score=286.70  Aligned_cols=257  Identities=25%  Similarity=0.397  Sum_probs=215.8

Q ss_pred             ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECC--CcceeEEEeecccCeEEEEcC-C--CceEEEEeCCCeE
Q 008467          307 DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK--TEEWKQQFEFHSGPTLDVDWR-N--NVSFATSSTDNMI  381 (564)
Q Consensus       307 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~d~~i  381 (564)
                      .+...+.+|.++|++++|+|++++|++|+.|++|++||+.  +......+..|..++.++.|. +  ...+++++.|+.|
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v   81 (379)
T 3jrp_A            2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV   81 (379)
T ss_dssp             ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence            3456788999999999999999999999999999999998  556677788899999999995 3  5788999999999


Q ss_pred             EEEEcCCCc--eeeEecCCCcceEEEEECCC--CCEEEEEeCCCcEEEEeCCCCe--eeeecccccccEEEEEEccCCCC
Q 008467          382 YVCKIGENR--PIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKIWNMKQDK--YVHDLREHSKEIYTIRWSPTGSG  455 (564)
Q Consensus       382 ~~~~~~~~~--~~~~~~~h~~~i~~v~~~~~--~~~las~s~dg~i~iwd~~~~~--~~~~~~~~~~~i~~i~~~p~~~~  455 (564)
                      ++|++..++  .+..+.+|...|.+++|+|+  +.+|++++.|+.|++||+.+..  ....+..|...|.+++|+|....
T Consensus        82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  161 (379)
T 3jrp_A           82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE  161 (379)
T ss_dssp             EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--
T ss_pred             EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccc
Confidence            999999886  77888899999999999999  9999999999999999998773  34456789999999999995210


Q ss_pred             CCC----CCCcEEEEEEeCCCeEEEEeCCCCe----EEEEEeCCCCCEEEEEEcCC---CCEEEEEeCCCcEEEEeCCCC
Q 008467          456 TNN----PNQQLILASASFDSTVKLWDVELGK----LLYSLNGHREPVYSLAFSPT---GEYLASGSLDKSMHIWSLKEG  524 (564)
Q Consensus       456 ~~~----~~~~~~l~s~s~dg~i~iwd~~~~~----~~~~~~~h~~~i~~~~~spd---g~~lasgs~dg~i~iw~~~~~  524 (564)
                      ...    ..+..+|++|+.||.|++||++++.    .+..+.+|..+|.+++|+|+   +++|++++.||.|++|++.++
T Consensus       162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~  241 (379)
T 3jrp_A          162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE  241 (379)
T ss_dssp             --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred             ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence            000    0011278999999999999998653    55678899999999999999   899999999999999999887


Q ss_pred             e---EEEEEe---cCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          525 K---IVKTYT---GNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       525 ~---~~~~~~---~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      .   ....+.   ....|.+++|+|+|++|++++.||.|.||+++
T Consensus       242 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~  286 (379)
T 3jrp_A          242 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  286 (379)
T ss_dssp             TSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred             CccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence            4   222222   34579999999999999999999999999986

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=2.6e-33  Score=279.88  Aligned_cols=272  Identities=15%  Similarity=0.226  Sum_probs=216.5

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEE-EEeeCCCcEEEEECCCccee
Q 008467          273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVKTEEWK  351 (564)
Q Consensus       273 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~  351 (564)
                      .+...|++++|+|||++|++|+.+| ++||+........ ..+...+..+.|.++++.+ ++++.|++|++||+.+++.+
T Consensus        17 ~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~   94 (355)
T 3vu4_A           17 HVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIM-SQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDV   94 (355)
T ss_dssp             --CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEE-EEECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEE
T ss_pred             cCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceee-eeecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEE
Confidence            4567899999999999999998775 7899976533222 2222357778888888887 67888999999999999988


Q ss_pred             EEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCC-ceeeEecCCCcceEEEEECCCCCEEEE--EeCCCcEEEEeC
Q 008467          352 QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTGSLLAS--CSDDVTAKIWNM  428 (564)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~i~~v~~~~~~~~las--~s~dg~i~iwd~  428 (564)
                      ..+. +..++.++.+..+..+++  .++.|++|++... +.+..+..   ....+++++  .+++.  |+.||.|++||+
T Consensus        95 ~~~~-~~~~v~~v~~~~~~~~~~--~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~  166 (355)
T 3vu4_A           95 SRIK-VDAPVKDLFLSREFIVVS--YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKL  166 (355)
T ss_dssp             EEEE-CSSCEEEEEECSSEEEEE--ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEEC
T ss_pred             EEEE-CCCceEEEEEcCCEEEEE--EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEEC
Confidence            8876 455788888877654443  4789999999887 66666554   444556666  56665  688999999999


Q ss_pred             CCCe----------------eeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCe-EEEEeCCCCeEEEEEe-C
Q 008467          429 KQDK----------------YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDST-VKLWDVELGKLLYSLN-G  490 (564)
Q Consensus       429 ~~~~----------------~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~-~  490 (564)
                      .++.                .+..+.+|...|.+++|+|++.         +|++|+.|++ |+|||+++++++..+. +
T Consensus       167 ~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~---------~l~s~s~d~~~v~iwd~~~~~~~~~~~~g  237 (355)
T 3vu4_A          167 QSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSD---------MVATCSQDGTIIRVFKTEDGVLVREFRRG  237 (355)
T ss_dssp             CC------------------CCEEECCCSSCEEEEEECTTSS---------EEEEEETTCSEEEEEETTTCCEEEEEECT
T ss_pred             CCCCccccccccccccccCcccEEEEccCCceEEEEECCCCC---------EEEEEeCCCCEEEEEECCCCcEEEEEEcC
Confidence            8765                2677899999999999999875         8999999998 9999999999999998 5


Q ss_pred             -CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE--E------------------E--ec--CCCEEEEEEccCC
Q 008467          491 -HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK--T------------------Y--TG--NGGIFEVCWNKEG  545 (564)
Q Consensus       491 -h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~--~------------------~--~~--~~~i~~~~w~~~g  545 (564)
                       |..+|++++|+|+|++||+|+.|++|+|||++.+...+  .                  +  ..  ......++|+++|
T Consensus       238 ~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~  317 (355)
T 3vu4_A          238 LDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISES  317 (355)
T ss_dssp             TCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSS
T ss_pred             CCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCC
Confidence             99999999999999999999999999999997653211  0                  0  00  1123668999999


Q ss_pred             CEEEEEEcCCcEEEEEee
Q 008467          546 DKIAACFANHTVCVLDFR  563 (564)
Q Consensus       546 ~~la~~~~~~~v~v~~~~  563 (564)
                      +.|++++.||.+.+|+++
T Consensus       318 ~~l~~~~~dg~~~~~~~~  335 (355)
T 3vu4_A          318 SLVVVWPHTRMIETFKVV  335 (355)
T ss_dssp             EEEEEETTTTEEEEEEEE
T ss_pred             CEEEEEeCCCeEEEEEEE
Confidence            999999999999999875

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=6.5e-34  Score=287.36  Aligned_cols=253  Identities=21%  Similarity=0.293  Sum_probs=201.5

Q ss_pred             cCCccceEEEEECC-CCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEE
Q 008467          213 EGHTSEVCACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA  291 (564)
Q Consensus       213 ~~h~~~V~~~~~sp-~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~  291 (564)
                      .+|...|.+++|+| ++++|++|+.|+.|++||+.+..           .   ..... ...+...|++++|+|++++|+
T Consensus       115 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-----------~---~~~~~-~~~~~~~v~~~~~~~~~~~l~  179 (383)
T 3ei3_B          115 MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSV-----------I---QVFAK-TDSWDYWYCCVDVSVSRQMLA  179 (383)
T ss_dssp             CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCE-----------E---EEEEC-CCCSSCCEEEEEEETTTTEEE
T ss_pred             CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCc-----------e---EEEec-cCCCCCCeEEEEECCCCCEEE
Confidence            47999999999999 68999999999999999987421           1   11111 122346799999999999999


Q ss_pred             EEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCC-EEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCc
Q 008467          292 TGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV  370 (564)
Q Consensus       292 sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (564)
                      +|+.||.|++|+..+.....+..|...|.+++|+|++. +|++|+.|++|++||+++....                   
T Consensus       180 ~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-------------------  240 (383)
T 3ei3_B          180 TGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK-------------------  240 (383)
T ss_dssp             EEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST-------------------
T ss_pred             EECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc-------------------
Confidence            99999999999998888889999999999999999999 8999999999999999864210                   


Q ss_pred             eEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeeeeeccccc-------c
Q 008467          371 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDLREHS-------K  442 (564)
Q Consensus       371 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~-~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~-------~  442 (564)
                                        ..++..+ +|...|.+++|+| ++++|++++.|+.|++||++++.....+..|.       .
T Consensus       241 ------------------~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  301 (383)
T 3ei3_B          241 ------------------NSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLT  301 (383)
T ss_dssp             ------------------TCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSC
T ss_pred             ------------------cceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccccccc
Confidence                              1122233 5888999999999 99999999999999999999887766665443       2


Q ss_pred             cEEEEEEccCCCC---CCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeC--CCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 008467          443 EIYTIRWSPTGSG---TNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG--HREPVYSLAFSPTGEYLASGSLDKSMH  517 (564)
Q Consensus       443 ~i~~i~~~p~~~~---~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--h~~~i~~~~~spdg~~lasgs~dg~i~  517 (564)
                      .+. +.|+|.+..   ...|+..  + +|+.||.|++||+.+++++..+.+  |...+..++|+|+|++||+|+ ||.|+
T Consensus       302 ~~~-~~~~p~~~~~~~~~s~dg~--~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~  376 (383)
T 3ei3_B          302 PIK-ATWHPMYDLIVAGRYPDDQ--L-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNIL  376 (383)
T ss_dssp             CCC-CEECSSSSEEEEECBCCTT--T-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEE
T ss_pred             ceE-EeccCCCCceEEEecCCcc--c-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEE
Confidence            222 344443320   0011111  1 677999999999999999999987  456788889999999999998 99999


Q ss_pred             EEeCCC
Q 008467          518 IWSLKE  523 (564)
Q Consensus       518 iw~~~~  523 (564)
                      ||++++
T Consensus       377 iw~~~~  382 (383)
T 3ei3_B          377 IWNRED  382 (383)
T ss_dssp             EEECC-
T ss_pred             EEecCC
Confidence            999874

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.9e-35  Score=296.49  Aligned_cols=239  Identities=19%  Similarity=0.274  Sum_probs=198.9

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEECCC---ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCccee
Q 008467          275 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNG---DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK  351 (564)
Q Consensus       275 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~---~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~  351 (564)
                      ...|++++|+|+|++|++|+.||.|++|+...   .....+.+|..+|.+++|+|++++|++++.|++|++||+.++.. 
T Consensus        11 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~-   89 (377)
T 3dwl_C           11 PKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT-   89 (377)
T ss_dssp             SSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C-
T ss_pred             CCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc-
Confidence            45799999999999999999999999999865   45567889999999999999999999999999999999876530 


Q ss_pred             EEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 008467          352 QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD  431 (564)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~  431 (564)
                                                           ..+...+.+|...|.+++|+|++++|++|+.|+.|++||++++
T Consensus        90 -------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  132 (377)
T 3dwl_C           90 -------------------------------------WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQE  132 (377)
T ss_dssp             -------------------------------------CCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC---
T ss_pred             -------------------------------------eeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCc
Confidence                                                 1123456679999999999999999999999999999999887


Q ss_pred             e---eeeeccc-ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC------------------CCeEEEEEe
Q 008467          432 K---YVHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE------------------LGKLLYSLN  489 (564)
Q Consensus       432 ~---~~~~~~~-~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~------------------~~~~~~~~~  489 (564)
                      .   ....+.. |...|.+++|+|++.         +|++++.|++|++||+.                  .++++..+ 
T Consensus       133 ~~~~~~~~~~~~h~~~v~~~~~~~~~~---------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  202 (377)
T 3dwl_C          133 NDWWVSKHLKRPLRSTILSLDWHPNNV---------LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-  202 (377)
T ss_dssp             --CCCCEEECSSCCSCEEEEEECTTSS---------EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-
T ss_pred             ccceeeeEeecccCCCeEEEEEcCCCC---------EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-
Confidence            6   3667777 999999999999875         79999999999999985                  35566667 


Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE----EEEEecC-CCEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467          490 GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI----VKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDF  562 (564)
Q Consensus       490 ~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~----~~~~~~~-~~i~~~~w~~~g~~la~~~~~~~v~v~~~  562 (564)
                      +|..+|++++|+|+|++||+|+.||.|++||+.+++.    +..+..+ ..|.+++|+|+|++|++|+.++ +.+|+.
T Consensus       203 ~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-~~~~~~  279 (377)
T 3dwl_C          203 PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYS-PILLQG  279 (377)
T ss_dssp             CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSS-EEEECC
T ss_pred             cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCc-EEEEEe
Confidence            8999999999999999999999999999999999876    6666654 4699999999999999997665 557754

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=8.4e-34  Score=288.60  Aligned_cols=275  Identities=17%  Similarity=0.254  Sum_probs=233.2

Q ss_pred             eEEEEECCCCCEE-EEEeCCCeEEEEECCCc-----eeEeecCCCCCEEEEEeCC-CCCEEEEeeCCCcEEEEECCCc--
Q 008467          278 VTTLDWNGEGTLL-ATGSYDGQARIWSTNGD-----LKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTE--  348 (564)
Q Consensus       278 V~~l~~s~~g~~l-~sg~~dg~i~vw~~~~~-----~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~~~~--  348 (564)
                      ...++++|+...+ ++|+.||.|+||+....     ....+.+|.++|++++|+| ++++|++|+.|++|++||+.++  
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~  116 (402)
T 2aq5_A           37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL  116 (402)
T ss_dssp             SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred             CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence            4457888877544 45789999999997532     3345778999999999999 9999999999999999999887  


Q ss_pred             -----ceeEEEeecccCeEEEEcCCC--ceEEEEeCCCeEEEEEcCCCceeeEe--cCCCcceEEEEECCCCCEEEEEeC
Q 008467          349 -----EWKQQFEFHSGPTLDVDWRNN--VSFATSSTDNMIYVCKIGENRPIKTF--AGHQGEVNCVKWDPTGSLLASCSD  419 (564)
Q Consensus       349 -----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~~~~~~~--~~h~~~i~~v~~~~~~~~las~s~  419 (564)
                           .....+..|...+.++.|.++  ..+++++.|+.|++|++..++++..+  .+|.+.|.+++|+|++++|++++.
T Consensus       117 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  196 (402)
T 2aq5_A          117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR  196 (402)
T ss_dssp             SSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEET
T ss_pred             ccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEec
Confidence                 556778889999999999876  47899999999999999999999999  899999999999999999999999


Q ss_pred             CCcEEEEeCCCCeeeeec-cccccc-EEEEEEccCCCCCCCCCCcEEEEEE---eCCCeEEEEeCCCCeE-EEEE-eCCC
Q 008467          420 DVTAKIWNMKQDKYVHDL-REHSKE-IYTIRWSPTGSGTNNPNQQLILASA---SFDSTVKLWDVELGKL-LYSL-NGHR  492 (564)
Q Consensus       420 dg~i~iwd~~~~~~~~~~-~~~~~~-i~~i~~~p~~~~~~~~~~~~~l~s~---s~dg~i~iwd~~~~~~-~~~~-~~h~  492 (564)
                      ||.|++||+++++.+..+ ..|... +.++.|+|++.         +|++|   +.|+.|++||+++++. +... ..|.
T Consensus       197 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  267 (402)
T 2aq5_A          197 DKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGK---------ILTTGFSRMSERQVALWDTKHLEEPLSLQELDTS  267 (402)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTE---------EEEEEECTTCCEEEEEEETTBCSSCSEEEECCCC
T ss_pred             CCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCc---------EEEEeccCCCCceEEEEcCccccCCceEEeccCC
Confidence            999999999999998888 678765 89999999764         78888   7899999999987654 2222 2467


Q ss_pred             CCEEEEEEcCCCCEEEE-EeCCCcEEEEeCCCCe----EEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          493 EPVYSLAFSPTGEYLAS-GSLDKSMHIWSLKEGK----IVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       493 ~~i~~~~~spdg~~las-gs~dg~i~iw~~~~~~----~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      ..|.+++|+|+|++|++ |+.||.|++|++.+++    .+..+.....+.+++|+|+|..+++  .++.+.+|++.
T Consensus       268 ~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~  341 (402)
T 2aq5_A          268 SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLH  341 (402)
T ss_dssp             SSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEE
T ss_pred             CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcC
Confidence            78999999999999975 5579999999999887    2344444577999999999998875  56689999874

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2.4e-34  Score=296.54  Aligned_cols=275  Identities=20%  Similarity=0.384  Sum_probs=209.6

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCc------------eeEeecCCC------------CCEEEEEeCCCC-
Q 008467          274 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD------------LKCTLSKHK------------GPIFSLKWNKKG-  328 (564)
Q Consensus       274 ~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~------------~~~~~~~h~------------~~V~~l~~~~~~-  328 (564)
                      +...|++++|+|+|++|++|+.||.|+||+....            ....+.+|.            .+|.+++|+|++ 
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~  106 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN  106 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence            3578999999999999999999999999997643            356788998            899999999998 


Q ss_pred             -CEEEEeeCCCcEEEEECCCcceeEEE-e--ecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEe-cCCCcceE
Q 008467          329 -DYLLTGSCDKTAIVWDVKTEEWKQQF-E--FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF-AGHQGEVN  403 (564)
Q Consensus       329 -~~l~s~s~D~~v~iwd~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~-~~h~~~i~  403 (564)
                       .+|++++.|++|++||+.++...... .  .+.+............+......+    +.. ...+...+ .+|...|.
T Consensus       107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~h~~~v~  181 (447)
T 3dw8_B          107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMD----LMV-EASPRRIFANAHTYHIN  181 (447)
T ss_dssp             SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEE----EEE-EEEEEEEECSCCSSCCC
T ss_pred             cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchh----eee-eccceEEeccCCCcceE
Confidence             79999999999999999775533210 0  000000000000000000000000    000 01233344 68999999


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEeCCC-Ceeee-------ecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEE
Q 008467          404 CVKWDPTGSLLASCSDDVTAKIWNMKQ-DKYVH-------DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVK  475 (564)
Q Consensus       404 ~v~~~~~~~~las~s~dg~i~iwd~~~-~~~~~-------~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~  475 (564)
                      +++|+|++++|++| .|++|++||+.+ ...+.       .+..|...|++++|+|++.        .+|++|+.||+|+
T Consensus       182 ~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~--------~~l~s~~~dg~i~  252 (447)
T 3dw8_B          182 SISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSC--------NTFVYSSSKGTIR  252 (447)
T ss_dssp             EEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCT--------TEEEEEETTSCEE
T ss_pred             EEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCC--------cEEEEEeCCCeEE
Confidence            99999999999999 899999999984 44443       3678999999999999872        1799999999999


Q ss_pred             EEeCCCCeE----EEEEeCCCC------------CEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CeEEEEEecCCC---
Q 008467          476 LWDVELGKL----LYSLNGHRE------------PVYSLAFSPTGEYLASGSLDKSMHIWSLKE-GKIVKTYTGNGG---  535 (564)
Q Consensus       476 iwd~~~~~~----~~~~~~h~~------------~i~~~~~spdg~~lasgs~dg~i~iw~~~~-~~~~~~~~~~~~---  535 (564)
                      +||+++++.    +..+.+|..            +|.+++|+|+|++|++++. +.|+|||+++ ++.+..+..+..   
T Consensus       253 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~  331 (447)
T 3dw8_B          253 LCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRS  331 (447)
T ss_dssp             EEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTT
T ss_pred             EEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccc
Confidence            999998886    678888876            8999999999999999999 9999999997 888888876543   


Q ss_pred             -------------EEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          536 -------------IFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       536 -------------i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                                   ++.++|+|+|++|++|+.||.|.|||++
T Consensus       332 ~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~  372 (447)
T 3dw8_B          332 KLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRN  372 (447)
T ss_dssp             THHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETT
T ss_pred             cccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcC
Confidence                         3449999999999999999999999975

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=3.9e-33  Score=279.16  Aligned_cols=278  Identities=19%  Similarity=0.331  Sum_probs=229.4

Q ss_pred             cCCCCeEEEEECCC---CCEEEEEeCCCeEEEEECC--Ccee-EeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECC
Q 008467          273 EKSKDVTTLDWNGE---GTLLATGSYDGQARIWSTN--GDLK-CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK  346 (564)
Q Consensus       273 ~~~~~V~~l~~s~~---g~~l~sg~~dg~i~vw~~~--~~~~-~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~  346 (564)
                      .|...|++++|+|+   |++|++|+.||.|++|+..  +... ..+.+|.++|.+++|+|++++|++++.|++|++||+.
T Consensus        37 ~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~  116 (368)
T 3mmy_A           37 SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLS  116 (368)
T ss_dssp             CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcC
Confidence            45688999999999   6999999999999999976  3333 6788999999999999999999999999999999999


Q ss_pred             CcceeEEEeecccCeEEEEc--CCC-ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcE
Q 008467          347 TEEWKQQFEFHSGPTLDVDW--RNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA  423 (564)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i  423 (564)
                      ++.... +..|...+.++.|  ..+ ..+++++.|+.|++|++...+++..+..|. .+.++.+.  ...+++++.++.+
T Consensus       117 ~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~i  192 (368)
T 3mmy_A          117 SNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVI--YPMAVVATAERGL  192 (368)
T ss_dssp             TTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEE--TTEEEEEEGGGCE
T ss_pred             CCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEec--CCeeEEEeCCCcE
Confidence            988766 5568889999998  544 568899999999999999999988888775 55566665  4578899999999


Q ss_pred             EEEeCCCCeeeeec--ccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC---eEEEEEeCCCC-----
Q 008467          424 KIWNMKQDKYVHDL--REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG---KLLYSLNGHRE-----  493 (564)
Q Consensus       424 ~iwd~~~~~~~~~~--~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~h~~-----  493 (564)
                      ++|++.........  ..+...+.++.+.+....     ....+++++.||.|++||++..   ..+..+.+|..     
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~  267 (368)
T 3mmy_A          193 IVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQN-----KPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNT  267 (368)
T ss_dssp             EEEECSSSCEEEEECCCSCSSCEEEEEEEECTTS-----CEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----
T ss_pred             EEEEeccccchhhhccccccCCCceEEEcccCCC-----CCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccc
Confidence            99999876443221  123344556665554321     1224899999999999999977   55677777776     


Q ss_pred             -------CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec-CCCEEEEEEccCCCEEEEEEcCCcEEE
Q 008467          494 -------PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCV  559 (564)
Q Consensus       494 -------~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~-~~~i~~~~w~~~g~~la~~~~~~~v~v  559 (564)
                             +|++++|+|+|++|++|+.||.|++||+.+++++..+.. ...|.+++|+|+|++||+|+.|+....
T Consensus       268 ~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~  341 (368)
T 3mmy_A          268 SAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKG  341 (368)
T ss_dssp             CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTC
T ss_pred             cccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccccccc
Confidence                   799999999999999999999999999999999988876 457999999999999999998875433

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=6.5e-33  Score=274.90  Aligned_cols=248  Identities=19%  Similarity=0.362  Sum_probs=215.5

Q ss_pred             EeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCc----ceeEEEeecccCeEEEEcCC---CceEEEEeCCCeEE
Q 008467          310 CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE----EWKQQFEFHSGPTLDVDWRN---NVSFATSSTDNMIY  382 (564)
Q Consensus       310 ~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~i~  382 (564)
                      ..+.+|.++|++++|+|++++|++|+.|++|++||+.++    .....+..|..++.++.|.+   ...+++++.|+.|+
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            456799999999999999999999999999999999876    35666778999999999976   67899999999999


Q ss_pred             EEEcCCC---------ceeeEecCCCcceEEEEECCC--CCEEEEEeCCCcEEEEeCCCCeeeeecc-------------
Q 008467          383 VCKIGEN---------RPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKIWNMKQDKYVHDLR-------------  438 (564)
Q Consensus       383 ~~~~~~~---------~~~~~~~~h~~~i~~v~~~~~--~~~las~s~dg~i~iwd~~~~~~~~~~~-------------  438 (564)
                      +|++..+         +++..+.+|.+.|.+++|+|+  +.+|++++.||.|++||+++++.+..+.             
T Consensus        85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  164 (351)
T 3f3f_A           85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA  164 (351)
T ss_dssp             EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred             EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence            9999876         567888999999999999999  9999999999999999998876544332             


Q ss_pred             cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE--EEEEeCCCCCEEEEEEcCCC----CEEEEEeC
Q 008467          439 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL--LYSLNGHREPVYSLAFSPTG----EYLASGSL  512 (564)
Q Consensus       439 ~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~h~~~i~~~~~spdg----~~lasgs~  512 (564)
                      .|...+.++.|+|....      ..+|++++.|+.+.+|+...++.  +..+.+|..+|++++|+|++    ++|++|+.
T Consensus       165 ~~~~~~~~~~~~p~~~~------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~  238 (351)
T 3f3f_A          165 NHLQSDFCLSWCPSRFS------PEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCK  238 (351)
T ss_dssp             SCSCCCEEEEECCCSSS------CCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEET
T ss_pred             CcccceeEEEeccCCCC------CcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcC
Confidence            57788999999997211      12789999999999998887765  67788999999999999998    89999999


Q ss_pred             CCcEEEEeCCCC----------------------------------------------eEEEEEecC-CCEEEEEEccCC
Q 008467          513 DKSMHIWSLKEG----------------------------------------------KIVKTYTGN-GGIFEVCWNKEG  545 (564)
Q Consensus       513 dg~i~iw~~~~~----------------------------------------------~~~~~~~~~-~~i~~~~w~~~g  545 (564)
                      ||.|++||++++                                              +.+..+.++ ..|++++|+|+|
T Consensus       239 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~  318 (351)
T 3f3f_A          239 DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTG  318 (351)
T ss_dssp             TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSS
T ss_pred             CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCC
Confidence            999999999875                                              455555543 569999999999


Q ss_pred             CEEEEEEcCCcEEEEEee
Q 008467          546 DKIAACFANHTVCVLDFR  563 (564)
Q Consensus       546 ~~la~~~~~~~v~v~~~~  563 (564)
                      ++|++|+.||.|+|||+.
T Consensus       319 ~~l~s~~~dg~v~iw~~~  336 (351)
T 3f3f_A          319 TILSSAGDDGKVRLWKAT  336 (351)
T ss_dssp             CCEEEEETTSCEEEEEEC
T ss_pred             CEEEEecCCCcEEEEecC
Confidence            999999999999999985

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-34  Score=314.42  Aligned_cols=254  Identities=25%  Similarity=0.395  Sum_probs=209.1

Q ss_pred             eEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC--C
Q 008467          210 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE--G  287 (564)
Q Consensus       210 ~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~--g  287 (564)
                      .++.+|.+.|++++|+|++++|++|+.||+|+||++.++.           ......    ...|...|++++|+++  +
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~-----------~~~~~~----l~~h~~~V~~l~~s~~~~~   67 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-----------HKLIDT----LTGHEGPVWRVDWAHPKFG   67 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE-----------EEEEEE----ECCCSSCEEEEEECCTTSC
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC-----------Ccccee----ccCCcCceEEEEecCCCCC
Confidence            5688999999999999999999999999999999986321           011112    2245678999999998  9


Q ss_pred             CEEEEEeCCCeEEEEECCCc---eeEeecCCCCCEEEEEeCCC--CCEEEEeeCCCcEEEEECCCcceeEEEeecccCeE
Q 008467          288 TLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL  362 (564)
Q Consensus       288 ~~l~sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~  362 (564)
                      ++|++|+.||.|++|+....   ....+..|..+|++++|+|+  +++|++|+.||+|++||++++...           
T Consensus        68 ~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~-----------  136 (753)
T 3jro_A           68 TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT-----------  136 (753)
T ss_dssp             SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCC-----------
T ss_pred             CEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc-----------
Confidence            99999999999999997654   55677889999999999999  999999999999999999775321           


Q ss_pred             EEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECC-------------CCCEEEEEeCCCcEEEEeCC
Q 008467          363 DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-------------TGSLLASCSDDVTAKIWNMK  429 (564)
Q Consensus       363 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~-------------~~~~las~s~dg~i~iwd~~  429 (564)
                                                  ....+.+|...|.+++|+|             ++.+|++|+.||+|++||++
T Consensus       137 ----------------------------~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~  188 (753)
T 3jro_A          137 ----------------------------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN  188 (753)
T ss_dssp             ----------------------------CCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEE
T ss_pred             ----------------------------ceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEecc
Confidence                                        1234567888999999999             58999999999999999998


Q ss_pred             CC----eeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-----EEEEEeCCCCCEEEEEE
Q 008467          430 QD----KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-----LLYSLNGHREPVYSLAF  500 (564)
Q Consensus       430 ~~----~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-----~~~~~~~h~~~i~~~~~  500 (564)
                      ++    .+...+..|...|++++|+|++..      ..+|++|+.||.|++||+.++.     .+.....|...|++++|
T Consensus       189 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~------~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~  262 (753)
T 3jro_A          189 SDAQTYVLESTLEGHSDWVRDVAWSPTVLL------RSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASW  262 (753)
T ss_dssp             TTTTEEEEEEEECCCSSCEEEEEECCCCSS------SEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEE
T ss_pred             CCcccceeeeeecCCCCcEEEEEeccCCCC------CCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEE
Confidence            76    556778899999999999998200      1379999999999999998764     23334568889999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCC
Q 008467          501 SPTGEYLASGSLDKSMHIWSLKE  523 (564)
Q Consensus       501 spdg~~lasgs~dg~i~iw~~~~  523 (564)
                      +|+|++|++|+.||.|++|++.+
T Consensus       263 spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          263 SLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             CTTTCCEEEECSSSCEECCBCCS
T ss_pred             cCCCCEEEEEcCCCEEEEEecCC
Confidence            99999999999999999999874

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=4.8e-33  Score=285.59  Aligned_cols=260  Identities=24%  Similarity=0.496  Sum_probs=214.9

Q ss_pred             eEccCCccceEEEEECCC-CCEEEEEECCCcEEEEeCCCCCCCCCC--CCCCceEEEEEeeccccccCCCCeEEEEECCC
Q 008467          210 TILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGA--QNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE  286 (564)
Q Consensus       210 ~~l~~h~~~V~~~~~sp~-~~~lasgs~D~~i~iW~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~  286 (564)
                      ..+.+|.+.|++++|+|+ +.+||+|+.||.|++|++.+.......  ...+.     ..    ...|...|++++|+|+
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~-----~~----~~~h~~~v~~l~~~~~  192 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPD-----LR----LRGHQKEGYGLSWNPN  192 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCS-----EE----EECCSSCCCCEEECTT
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCc-----EE----ecCCCCCeEEEEeCCC
Confidence            445689999999999997 789999999999999998753211110  01111     11    1235678999999999


Q ss_pred             CC-EEEEEeCCCeEEEEECCCc--------eeEeecCCCCCEEEEEeCC-CCCEEEEeeCCCcEEEEECCCcceeEEEee
Q 008467          287 GT-LLATGSYDGQARIWSTNGD--------LKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQFEF  356 (564)
Q Consensus       287 g~-~l~sg~~dg~i~vw~~~~~--------~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~  356 (564)
                      +. +|++|+.||.|++|+....        ....+..|...|.+++|+| ++..|++++.|+.|++||++++..      
T Consensus       193 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~------  266 (430)
T 2xyi_A          193 LNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT------  266 (430)
T ss_dssp             STTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS------
T ss_pred             CCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC------
Confidence            98 9999999999999998641        1345678999999999999 678899999999999999986421      


Q ss_pred             cccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCC-EEEEEeCCCcEEEEeCCC-Ceee
Q 008467          357 HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQ-DKYV  434 (564)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~-~las~s~dg~i~iwd~~~-~~~~  434 (564)
                                                      .+++..+.+|...|++++|+|+++ +|++|+.||+|++||+++ ..++
T Consensus       267 --------------------------------~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~  314 (430)
T 2xyi_A          267 --------------------------------SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL  314 (430)
T ss_dssp             --------------------------------SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCS
T ss_pred             --------------------------------CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCe
Confidence                                            123445667899999999999987 689999999999999987 5667


Q ss_pred             eecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC--------------CeEEEEEeCCCCCEEEEEE
Q 008467          435 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL--------------GKLLYSLNGHREPVYSLAF  500 (564)
Q Consensus       435 ~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~--------------~~~~~~~~~h~~~i~~~~~  500 (564)
                      ..+..|...|.+++|+|++.        .+|++++.||.|+|||+..              .+.+..+.+|...|++++|
T Consensus       315 ~~~~~h~~~v~~i~~sp~~~--------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  386 (430)
T 2xyi_A          315 HSFESHKDEIFQVQWSPHNE--------TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW  386 (430)
T ss_dssp             EEEECCSSCEEEEEECSSCT--------TEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEE
T ss_pred             EEeecCCCCEEEEEECCCCC--------CEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEE
Confidence            88889999999999999874        2789999999999999986              3678888899999999999


Q ss_pred             cCCCC-EEEEEeCCCcEEEEeCCCC
Q 008467          501 SPTGE-YLASGSLDKSMHIWSLKEG  524 (564)
Q Consensus       501 spdg~-~lasgs~dg~i~iw~~~~~  524 (564)
                      +|+++ +|++++.||.|+||++.++
T Consensus       387 ~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          387 NPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             CSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             CCCCCCEEEEEECCCCEEEeEcccc
Confidence            99999 8999999999999998754

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.9e-32  Score=271.96  Aligned_cols=240  Identities=21%  Similarity=0.350  Sum_probs=213.0

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCccee
Q 008467          273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK  351 (564)
Q Consensus       273 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~  351 (564)
                      .|...|++++|+|++++|++|+.||.|++|+.. +.....+.+|.++|.+++|+|++++|++++.|++|++||+.+++..
T Consensus        30 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  109 (369)
T 3zwl_B           30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCV  109 (369)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred             EeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence            456789999999999999999999999999964 5677788999999999999999999999999999999999876543


Q ss_pred             EEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCC-----CcEEEE
Q 008467          352 QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD-----VTAKIW  426 (564)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~d-----g~i~iw  426 (564)
                      ..                                         +. |...|.+++|+|++++|++++.+     +.|++|
T Consensus       110 ~~-----------------------------------------~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~  147 (369)
T 3zwl_B          110 AT-----------------------------------------WK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIY  147 (369)
T ss_dssp             EE-----------------------------------------EE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEE
T ss_pred             EE-----------------------------------------ee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEE
Confidence            32                                         22 56678999999999999999999     999999


Q ss_pred             eCCCCe-----------eeeecccccc--cEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-CeEEEEEeCCC
Q 008467          427 NMKQDK-----------YVHDLREHSK--EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-GKLLYSLNGHR  492 (564)
Q Consensus       427 d~~~~~-----------~~~~~~~~~~--~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~h~  492 (564)
                      |+....           .+..+..|..  .+.+++|+|++.         +|++++.||.|++||+++ ++.+..+..|.
T Consensus       148 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  218 (369)
T 3zwl_B          148 EIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGK---------YIIAGHKDGKISKYDVSNNYEYVDSIDLHE  218 (369)
T ss_dssp             EEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGC---------EEEEEETTSEEEEEETTTTTEEEEEEECCS
T ss_pred             EecCCccceeecccccceeeeccCCcCccceeEEEEcCCCC---------EEEEEcCCCEEEEEECCCCcEeEEEEecCC
Confidence            987553           2334445555  899999999875         789999999999999998 78889999999


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCC--------------cEE
Q 008467          493 EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANH--------------TVC  558 (564)
Q Consensus       493 ~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~--------------~v~  558 (564)
                      .+|.+++|+|++++|++++.||.|++||+++++.+..+.....+..++|+|+|+.+++++.++              .+.
T Consensus       219 ~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~  298 (369)
T 3zwl_B          219 KSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEAR  298 (369)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEE
T ss_pred             CceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeE
Confidence            999999999999999999999999999999999999999888999999999999999999888              788


Q ss_pred             EEEee
Q 008467          559 VLDFR  563 (564)
Q Consensus       559 v~~~~  563 (564)
                      +||++
T Consensus       299 ~~d~~  303 (369)
T 3zwl_B          299 FYHKI  303 (369)
T ss_dssp             EEETT
T ss_pred             EEecC
Confidence            88764

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.5e-33  Score=286.74  Aligned_cols=287  Identities=18%  Similarity=0.306  Sum_probs=234.8

Q ss_pred             ceEEEEECCCCC-EEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC-CCCEEEEEeC
Q 008467          218 EVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGTLLATGSY  295 (564)
Q Consensus       218 ~V~~~~~sp~~~-~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~l~sg~~  295 (564)
                      ....|+++|+.. ++++|+.||.|+||++.......             ........|...|++++|+| ++++|++|+.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~-------------~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~  102 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVD-------------KNVPLVCGHTAPVLDIAWCPHNDNVIASGSE  102 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECC-------------TTCCCBCCCSSCEEEEEECTTCTTEEEEEET
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCC-------------CCCceEecCCCCEEEEEeCCCCCCEEEEEeC
Confidence            345689999865 55678999999999986432110             00011234678899999999 9999999999


Q ss_pred             CCeEEEEECCC--------ceeEeecCCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECCCcceeEEE--eecccCeEEE
Q 008467          296 DGQARIWSTNG--------DLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQF--EFHSGPTLDV  364 (564)
Q Consensus       296 dg~i~vw~~~~--------~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~--~~~~~~~~~~  364 (564)
                      ||.|++|+...        .....+.+|..+|.+++|+|++ ++|++++.|++|++||+.+++....+  ..|...+.++
T Consensus       103 dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~  182 (402)
T 2aq5_A          103 DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSV  182 (402)
T ss_dssp             TSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEE
T ss_pred             CCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEE
Confidence            99999999764        3466788999999999999998 69999999999999999999988888  6788999999


Q ss_pred             EcCCC-ceEEEEeCCCeEEEEEcCCCceeeEe-cCCCcc-eEEEEECCCCCEEEEE---eCCCcEEEEeCCCCee-eeec
Q 008467          365 DWRNN-VSFATSSTDNMIYVCKIGENRPIKTF-AGHQGE-VNCVKWDPTGSLLASC---SDDVTAKIWNMKQDKY-VHDL  437 (564)
Q Consensus       365 ~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~-~~h~~~-i~~v~~~~~~~~las~---s~dg~i~iwd~~~~~~-~~~~  437 (564)
                      .|.++ ..+++++.|+.|++|++..+..+..+ .+|.+. +.++.|+|++++|++|   +.|+.|++||+++... +...
T Consensus       183 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~  262 (402)
T 2aq5_A          183 DWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQ  262 (402)
T ss_dssp             EECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEE
T ss_pred             EECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEE
Confidence            99754 57889999999999999999999888 788876 8999999999999999   7999999999988654 2222


Q ss_pred             -ccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE-EEEEeC--CCCCEEEEEEcCCCCEEEEEeCC
Q 008467          438 -REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-LYSLNG--HREPVYSLAFSPTGEYLASGSLD  513 (564)
Q Consensus       438 -~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~--h~~~i~~~~~spdg~~lasgs~d  513 (564)
                       ..|...+.+++|+|++.        .++++|+.||.|++||+.+++. +..+..  |..+|.+++|+|++.++++  .+
T Consensus       263 ~~~~~~~v~~~~~s~~~~--------~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~  332 (402)
T 2aq5_A          263 ELDTSSGVLLPFFDPDTN--------IVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KC  332 (402)
T ss_dssp             ECCCCSSCEEEEEETTTT--------EEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GT
T ss_pred             eccCCCceeEEEEcCCCC--------EEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cc
Confidence             24677899999999875        3445677899999999998773 444433  5689999999999999875  56


Q ss_pred             CcEEEEeCCCCeEE
Q 008467          514 KSMHIWSLKEGKIV  527 (564)
Q Consensus       514 g~i~iw~~~~~~~~  527 (564)
                      +.+++|++.++++.
T Consensus       333 ~~~~~~~l~~~~~~  346 (402)
T 2aq5_A          333 EIARFYKLHERKCE  346 (402)
T ss_dssp             EEEEEEEEETTEEE
T ss_pred             eeEEEEEcCCCcEE
Confidence            68999999887653

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.1e-32  Score=280.24  Aligned_cols=247  Identities=25%  Similarity=0.480  Sum_probs=205.2

Q ss_pred             CCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEE
Q 008467          214 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG  293 (564)
Q Consensus       214 ~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg  293 (564)
                      .|...|.+++|+|++++|++|+.||.|++|++.++..             +...    ..+...|.+++|  ++.+|++|
T Consensus       132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~-------------~~~~----~~~~~~v~~~~~--~~~~l~~~  192 (401)
T 4aez_A          132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTK-------------LRTM----AGHQARVGCLSW--NRHVLSSG  192 (401)
T ss_dssp             CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-------------EEEE----CCCSSCEEEEEE--ETTEEEEE
T ss_pred             CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeE-------------EEEe----cCCCCceEEEEE--CCCEEEEE
Confidence            4889999999999999999999999999999876532             1111    235678999999  56799999


Q ss_pred             eCCCeEEEEECC--CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCce
Q 008467          294 SYDGQARIWSTN--GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS  371 (564)
Q Consensus       294 ~~dg~i~vw~~~--~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (564)
                      +.||.|++|+..  +.....+.+|.+.|.+++|+|++.+|++|+.|++|++||++++.                      
T Consensus       193 ~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~----------------------  250 (401)
T 4aez_A          193 SRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSI----------------------  250 (401)
T ss_dssp             ETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSS----------------------
T ss_pred             cCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCC----------------------
Confidence            999999999986  45567788999999999999999999999999999999997643                      


Q ss_pred             EEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCC-CEEEEEe--CCCcEEEEeCCCCeeeeecccccccEEEEE
Q 008467          372 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCS--DDVTAKIWNMKQDKYVHDLREHSKEIYTIR  448 (564)
Q Consensus       372 ~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~-~~las~s--~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~  448 (564)
                                         ++..+.+|...|.+++|+|++ .++++|+  .|+.|++||+.+++.+..+. +...|.+++
T Consensus       251 -------------------~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~  310 (401)
T 4aez_A          251 -------------------PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLI  310 (401)
T ss_dssp             -------------------EEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEE
T ss_pred             -------------------ccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEE
Confidence                               233456788899999999976 5666665  79999999999999888775 667899999


Q ss_pred             EccCCCCCCCCCCcEEEEE--EeCCCeEEEEeCCCCeEE--EEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 008467          449 WSPTGSGTNNPNQQLILAS--ASFDSTVKLWDVELGKLL--YSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG  524 (564)
Q Consensus       449 ~~p~~~~~~~~~~~~~l~s--~s~dg~i~iwd~~~~~~~--~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~  524 (564)
                      |+|++.         +|++  |+.||.|++||+.+++..  ..+.+|..+|.+++|+|+|++|++|+.||.|++|++.++
T Consensus       311 ~s~~~~---------~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~  381 (401)
T 4aez_A          311 WSPHSK---------EIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDG  381 (401)
T ss_dssp             ECSSSS---------EEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-
T ss_pred             ECCCCC---------eEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence            999875         5566  448999999999986554  457799999999999999999999999999999999998


Q ss_pred             eEEEEE
Q 008467          525 KIVKTY  530 (564)
Q Consensus       525 ~~~~~~  530 (564)
                      +.+...
T Consensus       382 ~~~~~~  387 (401)
T 4aez_A          382 DHVKRP  387 (401)
T ss_dssp             ------
T ss_pred             cccccc
Confidence            876553

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.4e-33  Score=282.30  Aligned_cols=266  Identities=20%  Similarity=0.332  Sum_probs=210.3

Q ss_pred             CccceEEEEECCC----CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC-CCCE
Q 008467          215 HTSEVCACAWSPA----GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGTL  289 (564)
Q Consensus       215 h~~~V~~~~~sp~----~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~g~~  289 (564)
                      |...|++++|+|+    +.+|++|+.||.|++|++.++..             ....    ..+...|++++|+| ++.+
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-------------~~~~----~~~~~~i~~~~~~~~~~~~  130 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQC-------------IKHY----VGHGNAINELKFHPRDPNL  130 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCE-------------EEEE----ESCCSCEEEEEECSSCTTE
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceE-------------eeee----cCCCCcEEEEEECCCCCCE
Confidence            6688999999999    67999999999999999876532             1111    23567899999999 9999


Q ss_pred             EEEEeCCCeEEEEECC-CceeEee---cCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEE
Q 008467          290 LATGSYDGQARIWSTN-GDLKCTL---SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD  365 (564)
Q Consensus       290 l~sg~~dg~i~vw~~~-~~~~~~~---~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~  365 (564)
                      |++|+.||.|++|+.. +.....+   ..|...|.+++|+|++++|++++.|+.|++||+++++....+....      .
T Consensus       131 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~  204 (366)
T 3k26_A          131 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESY------D  204 (366)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHH------T
T ss_pred             EEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeE------E
Confidence            9999999999999986 4455555   6899999999999999999999999999999999876544332110      0


Q ss_pred             cCCCce-EEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCee-----------
Q 008467          366 WRNNVS-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY-----------  433 (564)
Q Consensus       366 ~~~~~~-~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~-----------  433 (564)
                      +..+.. +....    .   . ..........+|...|.+++|+  +++|++++.|+.|++||+.+...           
T Consensus       205 ~~~~~~~~~~~~----~---~-~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~  274 (366)
T 3k26_A          205 YNPNKTNRPFIS----Q---K-IHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESN  274 (366)
T ss_dssp             CCGGGCSSCCCC----E---E-ECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCC
T ss_pred             ecCCCCcccccc----e---e-eccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcc
Confidence            000000 00000    0   0 0011234556799999999998  78999999999999999887643           


Q ss_pred             ---eeecccccccEEEEEEccC--CCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe----EEEEEeCC--CCCEEEEEEcC
Q 008467          434 ---VHDLREHSKEIYTIRWSPT--GSGTNNPNQQLILASASFDSTVKLWDVELGK----LLYSLNGH--REPVYSLAFSP  502 (564)
Q Consensus       434 ---~~~~~~~~~~i~~i~~~p~--~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~----~~~~~~~h--~~~i~~~~~sp  502 (564)
                         +..+..|...|.+++|+|+  +.         +|++|+.||.|++||+.+++    ....+.+|  ..+|++++|+|
T Consensus       275 ~~~~~~~~~~~~~v~~~~~s~~~~~~---------~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  345 (366)
T 3k26_A          275 VTILGRFDYSQCDIWYMRFSMDFWQK---------MLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSR  345 (366)
T ss_dssp             EEEEEEEECSSCCSSCCCCEECTTSS---------EEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECT
T ss_pred             hheeccccccCCcEEEEEEcCCCCCc---------EEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCC
Confidence               6777788889999999998  54         79999999999999999874    45577777  78999999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCC
Q 008467          503 TGEYLASGSLDKSMHIWSLK  522 (564)
Q Consensus       503 dg~~lasgs~dg~i~iw~~~  522 (564)
                      +|++|++|+.||.|++||+.
T Consensus       346 ~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          346 DSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             TSSEEEEEETTSEEEEEEC-
T ss_pred             CCCeEEEEeCCCEEEEEEec
Confidence            99999999999999999985

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-34  Score=285.02  Aligned_cols=263  Identities=10%  Similarity=0.061  Sum_probs=204.4

Q ss_pred             EECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 008467          223 AWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIW  302 (564)
Q Consensus       223 ~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw  302 (564)
                      .+.+++.+|++|+.||+|++||+.++....          .+.         ...|.++.|+|+   +++|+.|+.|++|
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~----------~~~---------~~~v~~~~~~~~---~~s~s~D~~i~~w  100 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTIT----------TIT---------TPNPRTGGEHPA---IISRGPCNRLLLL  100 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEE----------EEE---------EECCCTTCCCCS---EEEECSTTEEEEE
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEE----------EEe---------cCCceeeeeCCc---eEEecCCCeEEEE
Confidence            455688999999999999999998764311          111         134677788888   9999999999999


Q ss_pred             ECCCce----------eE-eecCCCCCEEEEEeCC--CCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCC
Q 008467          303 STNGDL----------KC-TLSKHKGPIFSLKWNK--KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN  369 (564)
Q Consensus       303 ~~~~~~----------~~-~~~~h~~~V~~l~~~~--~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  369 (564)
                      +..+..          .. ....|.++|.+++|+|  ++++|++|+.|++|++||+++++....+               
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~---------------  165 (343)
T 3lrv_A          101 YPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVH---------------  165 (343)
T ss_dssp             ETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEE---------------
T ss_pred             EccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEE---------------
Confidence            876432          22 2336778999999999  9999999999999999999876542211               


Q ss_pred             ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeee-eeccc-ccccEEEE
Q 008467          370 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV-HDLRE-HSKEIYTI  447 (564)
Q Consensus       370 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~-~~~~~-~~~~i~~i  447 (564)
                                               ...|...|++++|+|++.+|++|+.||.|++||+++++.+ ..+.. |..+|.++
T Consensus       166 -------------------------~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l  220 (343)
T 3lrv_A          166 -------------------------SAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEV  220 (343)
T ss_dssp             -------------------------CCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEE
T ss_pred             -------------------------ecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEE
Confidence                                     1224557899999999999999999999999999999887 77888 99999999


Q ss_pred             EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeC---CCCCEE--EEEEcCCCCEEEEEeC-CCcEEEEeC
Q 008467          448 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG---HREPVY--SLAFSPTGEYLASGSL-DKSMHIWSL  521 (564)
Q Consensus       448 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---h~~~i~--~~~~spdg~~lasgs~-dg~i~iw~~  521 (564)
                      +|+|++.         +|++++ |++|++||+++++.+..+..   |..++.  +++|+|+|++|++|+. |+.|+||++
T Consensus       221 ~fs~~g~---------~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~  290 (343)
T 3lrv_A          221 KFADNGY---------WMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKF  290 (343)
T ss_dssp             EECTTSS---------EEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             EEeCCCC---------EEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEE
Confidence            9999875         788888 55999999998876554433   434444  6999999999999998 999999999


Q ss_pred             CCCeEEEEEecCCCEEEEEEcc---CCCEEEEEEcCCcEEEE
Q 008467          522 KEGKIVKTYTGNGGIFEVCWNK---EGDKIAACFANHTVCVL  560 (564)
Q Consensus       522 ~~~~~~~~~~~~~~i~~~~w~~---~g~~la~~~~~~~v~v~  560 (564)
                      .++......   ..+..++|++   +++.|++++.|+.+.++
T Consensus       291 ~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~  329 (343)
T 3lrv_A          291 DKKTKNWTK---DEESALCLQSDTADFTDMDVVCGDGGIAAI  329 (343)
T ss_dssp             CTTTCSEEE---EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred             cccccceEe---cCceeEecCccccccceeEEEecCCceEEE
Confidence            765433222   3467788988   88899999888888765

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=1.9e-31  Score=273.76  Aligned_cols=277  Identities=13%  Similarity=0.100  Sum_probs=238.1

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEECC-CceeE-----eecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcc
Q 008467          276 KDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKC-----TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE  349 (564)
Q Consensus       276 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~-----~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~  349 (564)
                      ..+.+++|+|++.++++++.++.|++|+.. +....     .+.+|.+.|.+++|++++..+++++.|++|++||+.+++
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~  202 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA  202 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred             CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence            346689999988888888889999999986 44444     345789999999999999999999999999999999999


Q ss_pred             eeEEEeecccCeEEEEcCCCc--eEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEe--------C
Q 008467          350 WKQQFEFHSGPTLDVDWRNNV--SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS--------D  419 (564)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s--------~  419 (564)
                      ....+..+...+..+.|.++.  .+++++.++.|++|++..++.+..+..+. .+.+++|+|+++.|++++        .
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~~~~~  281 (433)
T 3bws_A          203 YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIG-LPRGLLLSKDGKELYIAQFSASNQESG  281 (433)
T ss_dssp             EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCS-EEEEEEECTTSSEEEEEEEESCTTCSC
T ss_pred             EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCC-CceEEEEcCCCCEEEEEECCCCccccC
Confidence            888888888888888886543  44566689999999999888887776654 589999999999999888        5


Q ss_pred             CCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEE
Q 008467          420 DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLA  499 (564)
Q Consensus       420 dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~  499 (564)
                      |+.|++||+.+++.+..+ .|...+..++|+|++.        .++++++.|+.|++||+.+++.+..+. +...+.+++
T Consensus       282 dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~--------~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~  351 (433)
T 3bws_A          282 GGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTEN--------KIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIA  351 (433)
T ss_dssp             CEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTT--------EEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEE
T ss_pred             CCeEEEEECCCCcEEeec-cCCCCcceEEECCCCC--------EEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEE
Confidence            899999999988876654 4566789999999874        467888999999999999999888776 667899999


Q ss_pred             EcCCCCEEEEEeC---------------CCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEc-CCcEEEEEee
Q 008467          500 FSPTGEYLASGSL---------------DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFA-NHTVCVLDFR  563 (564)
Q Consensus       500 ~spdg~~lasgs~---------------dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~-~~~v~v~~~~  563 (564)
                      |+|+|++|++++.               ||.|++||+.+++.+..+.....+..++|+|+|++|+++.. ++.|.||++.
T Consensus       352 ~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          352 LSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             ECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             EcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence            9999999988876               57999999999999999988888999999999999998875 9999999975

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=5.9e-33  Score=277.26  Aligned_cols=276  Identities=12%  Similarity=0.148  Sum_probs=210.1

Q ss_pred             EccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEE
Q 008467          211 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL  290 (564)
Q Consensus       211 ~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l  290 (564)
                      .+.+|...|.+++|+|+|++||+|+.|+ ++||++.++..           .....        ...+..++|.++++.+
T Consensus        14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~-----------~~~~~--------~~~~~~~~~~~~~~~~   73 (355)
T 3vu4_A           14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAH-----------IMSQE--------MRHLSKVRMLHRTNYV   73 (355)
T ss_dssp             -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEE-----------EEEEE--------CSCCCEEEECTTSSEE
T ss_pred             ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcce-----------eeeee--------cCCeEEEEEcCCCCEE
Confidence            4578999999999999999999998775 78999764321           11111        1247788899988877


Q ss_pred             -EEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCc-ceeEEEeecccCeEEEEcC
Q 008467          291 -ATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE-EWKQQFEFHSGPTLDVDWR  367 (564)
Q Consensus       291 -~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~  367 (564)
                       ++|+.|+.|++||.. +.....+. |..+|.+++|+++.  ++++ .|++|++||+.++ +.+..+.. ...+..+.+ 
T Consensus        74 ~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~-~~~~~~~s~-  147 (355)
T 3vu4_A           74 AFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR-FGGVCEFSN-  147 (355)
T ss_dssp             EEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE-EEEEEEEET-
T ss_pred             EEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc-CCceEEEEc-
Confidence             567788999999975 45555554 67799999999864  3333 5889999999887 55555544 222334443 


Q ss_pred             CCceEEE--EeCCCeEEEEEcCCCc---------------e-eeEecCCCcceEEEEECCCCCEEEEEeCCCc-EEEEeC
Q 008467          368 NNVSFAT--SSTDNMIYVCKIGENR---------------P-IKTFAGHQGEVNCVKWDPTGSLLASCSDDVT-AKIWNM  428 (564)
Q Consensus       368 ~~~~~~~--~~~d~~i~~~~~~~~~---------------~-~~~~~~h~~~i~~v~~~~~~~~las~s~dg~-i~iwd~  428 (564)
                        ..++.  ++.++.|++|++....               | +..+.+|.+.|++++|+|+|++||+|+.|++ |+|||+
T Consensus       148 --~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~  225 (355)
T 3vu4_A          148 --GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKT  225 (355)
T ss_dssp             --TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEET
T ss_pred             --cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEEC
Confidence              33443  6789999999998754               3 7889999999999999999999999999998 999999


Q ss_pred             CCCeeeeecc-c-ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE--EEE-----------------
Q 008467          429 KQDKYVHDLR-E-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL--LYS-----------------  487 (564)
Q Consensus       429 ~~~~~~~~~~-~-~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~-----------------  487 (564)
                      ++++++..+. + |...|++++|+|++.         +|++++.|++|+|||++.+..  ...                 
T Consensus       226 ~~~~~~~~~~~g~h~~~v~~~~~s~~~~---------~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (355)
T 3vu4_A          226 EDGVLVREFRRGLDRADVVDMKWSTDGS---------KLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLC  296 (355)
T ss_dssp             TTCCEEEEEECTTCCSCEEEEEECTTSC---------EEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSE
T ss_pred             CCCcEEEEEEcCCCCCcEEEEEECCCCC---------EEEEEECCCEEEEEEccCCCCcccccccceeecccccccccee
Confidence            9999999998 5 999999999999875         799999999999999975421  111                 


Q ss_pred             ---E-eCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 008467          488 ---L-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE  523 (564)
Q Consensus       488 ---~-~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~  523 (564)
                         + ..+..+...++|+|||++|++++.||.+++|++..
T Consensus       297 ~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~  336 (355)
T 3vu4_A          297 NFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF  336 (355)
T ss_dssp             EEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred             EEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence               1 11122346799999999999999999999998754

>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A

Probab=100.00  E-value=6.7e-37  Score=224.31  Aligned_cols=86  Identities=50%  Similarity=0.818  Sum_probs=69.3

Q ss_pred             CcCccchhhhhHHHHHhcCCceeeeccccccCCccCCCCCCCCCchhHHHHHHhhceeEeeeeeecCCCCCCcccccccc
Q 008467            3 SITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLEMEANLTCQSDVDMDEDFSFL   82 (564)
Q Consensus         3 ~i~s~evn~Li~ryl~E~g~~~sa~~~~~E~~~~~~~~~~~~ip~~aLv~~~qkgl~y~~~e~~~~~~~~~~~~~~~~~~   82 (564)
                      ||||+||||||||||||+||.||||+|++||+|++++++..+|||||||++|||||+|+++|.++ +++++.++..  ++
T Consensus         2 sitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~~~~~~~~VppgaLVsllQKGL~Y~~~E~~~-~~~g~~~~~~--~~   78 (90)
T 2xtc_A            2 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISI-NEDGTVFDGR--PI   78 (90)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGGSCCCGGGSCTTHHHHHHHHHHHHHHHHHHT-TSSCCTTCC-----
T ss_pred             CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCccccccccCCcchHHHHHHHHHHHHHHHHHh-cCCCCccCCC--CC
Confidence            79999999999999999999999999999999999999888999999999999999999999999 6677765532  33


Q ss_pred             ccccccchh
Q 008467           83 QPMDLITKD   91 (564)
Q Consensus        83 ~~~~~~~~~   91 (564)
                      .+++++..+
T Consensus        79 ~~~~ll~~~   87 (90)
T 2xtc_A           79 ESLSLIDAV   87 (90)
T ss_dssp             ---------
T ss_pred             Cchhhhhhc
Confidence            455554443

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=2.8e-32  Score=279.82  Aligned_cols=246  Identities=24%  Similarity=0.448  Sum_probs=213.9

Q ss_pred             EeecCCCCCEEEEEeCCC-CCEEEEeeCCCcEEEEECCC----------cceeEEEeecccCeEEEEcCCCc--eEEEEe
Q 008467          310 CTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKT----------EEWKQQFEFHSGPTLDVDWRNNV--SFATSS  376 (564)
Q Consensus       310 ~~~~~h~~~V~~l~~~~~-~~~l~s~s~D~~v~iwd~~~----------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  376 (564)
                      .....|.++|++++|+|+ +.+|++++.||.|++||+.+          ......+..|...+..+.|.+..  .+++++
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            345679999999999997 67899999999999999976          56667788899999999997653  789999


Q ss_pred             CCCeEEEEEcCCCc-------eeeEecCCCcceEEEEECC-CCCEEEEEeCCCcEEEEeCCCC---eeeeecccccccEE
Q 008467          377 TDNMIYVCKIGENR-------PIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQD---KYVHDLREHSKEIY  445 (564)
Q Consensus       377 ~d~~i~~~~~~~~~-------~~~~~~~h~~~i~~v~~~~-~~~~las~s~dg~i~iwd~~~~---~~~~~~~~~~~~i~  445 (564)
                      .|+.|++|++....       +...+.+|...|.+++|+| ++.+|++++.||.|++||+++.   ..+..+..|...|.
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  281 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN  281 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred             CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence            99999999998732       2567789999999999999 6789999999999999999977   56777889999999


Q ss_pred             EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-CeEEEEEeCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCC
Q 008467          446 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-GKLLYSLNGHREPVYSLAFSPTGE-YLASGSLDKSMHIWSLKE  523 (564)
Q Consensus       446 ~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~h~~~i~~~~~spdg~-~lasgs~dg~i~iw~~~~  523 (564)
                      +++|+|.+.        .+|++|+.||+|++||+++ +..+..+.+|..+|++++|+|+++ +|++++.||.|+|||+..
T Consensus       282 ~i~~~p~~~--------~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~  353 (430)
T 2xyi_A          282 CLSFNPYSE--------FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK  353 (430)
T ss_dssp             EEEECSSCT--------TEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred             EEEeCCCCC--------CEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence            999999764        3789999999999999997 567888899999999999999995 699999999999999986


Q ss_pred             --------------CeEEEEEecC-CCEEEEEEccCCC-EEEEEEcCCcEEEEEee
Q 008467          524 --------------GKIVKTYTGN-GGIFEVCWNKEGD-KIAACFANHTVCVLDFR  563 (564)
Q Consensus       524 --------------~~~~~~~~~~-~~i~~~~w~~~g~-~la~~~~~~~v~v~~~~  563 (564)
                                    ..++..+.++ ..|.+++|+|++. .|++++.|+.|.||+++
T Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~  409 (430)
T 2xyi_A          354 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA  409 (430)
T ss_dssp             TTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred             CccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence                          2556666554 4599999999999 99999999999999985

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.5e-33  Score=304.80  Aligned_cols=251  Identities=25%  Similarity=0.432  Sum_probs=209.6

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC---CceeEeecCCCCCEEEEEeCCC--CCEEEEeeCCCcEEEEECCC
Q 008467          273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN---GDLKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKT  347 (564)
Q Consensus       273 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~---~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~  347 (564)
                      .|...|++++|+|+|++|++|+.||.|+||+..   +.....+.+|.++|++++|+|+  +++|++|+.||+|++||+.+
T Consensus         7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~   86 (753)
T 3jro_A            7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN   86 (753)
T ss_dssp             -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEET
T ss_pred             cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCC
Confidence            467889999999999999999999999999975   3455678899999999999988  99999999999999999876


Q ss_pred             cceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC--CCEEEEEeCCCcEEE
Q 008467          348 EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKI  425 (564)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~--~~~las~s~dg~i~i  425 (564)
                      +...                                       .+..+.+|...|.+++|+|+  ++++++|+.||+|++
T Consensus        87 ~~~~---------------------------------------~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~v  127 (753)
T 3jro_A           87 GRWS---------------------------------------QIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV  127 (753)
T ss_dssp             TEEE---------------------------------------EEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEE
T ss_pred             Cccc---------------------------------------ccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEE
Confidence            5321                                       23456779999999999999  999999999999999


Q ss_pred             EeCCCCe--eeeecccccccEEEEEEccCCCCC-----CCCCCcEEEEEEeCCCeEEEEeCCCC----eEEEEEeCCCCC
Q 008467          426 WNMKQDK--YVHDLREHSKEIYTIRWSPTGSGT-----NNPNQQLILASASFDSTVKLWDVELG----KLLYSLNGHREP  494 (564)
Q Consensus       426 wd~~~~~--~~~~~~~~~~~i~~i~~~p~~~~~-----~~~~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~h~~~  494 (564)
                      ||+++..  ....+..|...|.++.|+|.....     ..+ +..+|++|+.||+|++||++++    ..+..+.+|..+
T Consensus       128 wdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~-d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~  206 (753)
T 3jro_A          128 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTK-ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW  206 (753)
T ss_dssp             EECCSSSCCCCEEEECCSSCEEEEEECCCC---------CG-GGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC
T ss_pred             EEeecCCCcceeEeecCCCceEEEEecCcccccccccccCC-CCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCc
Confidence            9998773  345567899999999999952100     000 1126899999999999999876    566788899999


Q ss_pred             EEEEEEcCC---CCEEEEEeCCCcEEEEeCCCCeE------EEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          495 VYSLAFSPT---GEYLASGSLDKSMHIWSLKEGKI------VKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       495 i~~~~~spd---g~~lasgs~dg~i~iw~~~~~~~------~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      |++++|+|+   |++|++|+.||.|++||+.++..      .........|++++|+|+|++|++|+.||.|.|||++
T Consensus       207 V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~  284 (753)
T 3jro_A          207 VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (753)
T ss_dssp             EEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred             EEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence            999999999   99999999999999999988641      1111234568899999999999999999999999975

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1.9e-32  Score=277.58  Aligned_cols=243  Identities=14%  Similarity=0.119  Sum_probs=180.4

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEECCCce------eEeecCCCCCEEEEEeCC--------CCCEEEEeeCCCcEEEE
Q 008467          278 VTTLDWNGEGTLLATGSYDGQARIWSTNGDL------KCTLSKHKGPIFSLKWNK--------KGDYLLTGSCDKTAIVW  343 (564)
Q Consensus       278 V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~------~~~~~~h~~~V~~l~~~~--------~~~~l~s~s~D~~v~iw  343 (564)
                      +....+++++.+|++|+.|++|+||+.....      ...+.+|.+.|.+++|+|        ++++|+|||.|++|+||
T Consensus        92 ~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~W  171 (393)
T 4gq1_A           92 GNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIW  171 (393)
T ss_dssp             -----CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEE
T ss_pred             cceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEE
Confidence            3344455677889999999999999976432      234679999999999998        78899999999999999


Q ss_pred             ECCCcceeEEEeecccCeEEEEcCCC--ceEEEEeCCCeEEEEEcCCCceeeE-------------------------ec
Q 008467          344 DVKTEEWKQQFEFHSGPTLDVDWRNN--VSFATSSTDNMIYVCKIGENRPIKT-------------------------FA  396 (564)
Q Consensus       344 d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~~~~~~-------------------------~~  396 (564)
                      |++++.....+..|..++.++.|.++  ..+++++.|+.|++|++..++....                         ..
T Consensus       172 d~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  251 (393)
T 4gq1_A          172 RLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSS  251 (393)
T ss_dssp             EEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------
T ss_pred             ECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecc
Confidence            99988877778888889999999865  3689999999999999976543221                         24


Q ss_pred             CCCcceEEEEEC-CCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCC-----------CCCCCCcEE
Q 008467          397 GHQGEVNCVKWD-PTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSG-----------TNNPNQQLI  464 (564)
Q Consensus       397 ~h~~~i~~v~~~-~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~-----------~~~~~~~~~  464 (564)
                      +|...+.++.|+ |+++.|++++.|+++++||+..+.....+..|...+..+.+.|+...           ...+....+
T Consensus       252 ~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (393)
T 4gq1_A          252 GIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYF  331 (393)
T ss_dssp             CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEE
T ss_pred             cccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEE
Confidence            677888999986 89999999999999999999988877777777777777766665321           012234567


Q ss_pred             EEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 008467          465 LASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL  521 (564)
Q Consensus       465 l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~  521 (564)
                      +++|+.||+|+|||+.+++++..+.+|..+|.+++|||||++||+++.+| +.+|.+
T Consensus       332 ~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          332 ATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             EEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred             EEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence            88999999999999999988888888999999999999999999999887 556654

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.2e-33  Score=282.91  Aligned_cols=258  Identities=14%  Similarity=0.084  Sum_probs=211.5

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEE
Q 008467          275 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF  354 (564)
Q Consensus       275 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  354 (564)
                      ...|.+++|||||+++||++.|++|+  +  +.....+.+|...|++++|+|+|       .++++.+|+....... .+
T Consensus        15 ~~~v~sv~~SpDG~~iASas~D~TV~--d--~~~~~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~~~-~~   82 (588)
T 2j04_A           15 EDWKNNLTWARDGTLYLTTFPDISIG--Q--PKYAKDINCNSKNLFHVKEFPLE-------FENKLDFELAQQNGLL-NS   82 (588)
T ss_dssp             SSSSCCEEECTTSCEEEECSSSEEEE--E--ECCCSCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSCSS-TT
T ss_pred             hccEEEEEECCCCCEEEEEcCCceee--c--ccccceecCCCccEEEEEECCCC-------CcceEEEEeCCCceEe-ec
Confidence            46799999999999999999999999  5  44444568999999999999999       5677777765433322 11


Q ss_pred             eecccCeEEEEcCCC-ceEEEEeCCCeEEEEEcCCCceeeEecCCCc-----ceEEEEECCCCCEEEEEeCCCcEEEEeC
Q 008467          355 EFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQG-----EVNCVKWDPTGSLLASCSDDVTAKIWNM  428 (564)
Q Consensus       355 ~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~-----~i~~v~~~~~~~~las~s~dg~i~iwd~  428 (564)
                       .+...+.++.|.++ ..+++++.|+.+++|+...  .+..+. |..     .|.+++|||||++||+|+.||+|+|||+
T Consensus        83 -~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~  158 (588)
T 2j04_A           83 -QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSI  158 (588)
T ss_dssp             -SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEEC
T ss_pred             -CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEEC
Confidence             33677999999765 5689999999999999644  566666 665     4999999999999999999999999999


Q ss_pred             CCCee-------eeec----ccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE---EEEE-eCCCC
Q 008467          429 KQDKY-------VHDL----REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL---LYSL-NGHRE  493 (564)
Q Consensus       429 ~~~~~-------~~~~----~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~-~~h~~  493 (564)
                      .++..       +.++    .+|...|.+++|+|+|           +++++.|++|++||+..+..   ..++ .+|..
T Consensus       159 ~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-----------Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~  227 (588)
T 2j04_A          159 RKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-----------LVAALSNNSVFSMTVSASSHQPVSRMIQNASRR  227 (588)
T ss_dssp             CCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-----------EEEEETTCCEEEECCCSSSSCCCEEEEECCCSS
T ss_pred             CCCccccccceeeeeeecccccccccEEEEEEcCCc-----------EEEEeCCCeEEEEECCCCccccceeeecccccC
Confidence            98752       5665    6677899999999963           67888999999999987763   3566 47888


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE-EEEecCCCEEEEEE--ccCCCEEEEEEcCCcEEEEEee
Q 008467          494 PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV-KTYTGNGGIFEVCW--NKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       494 ~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~-~~~~~~~~i~~~~w--~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      .|.+++|+  |++||+++ +++|++|++.+++.. ..+.....+++++|  +|+|+.|++++.+|+ +||.++
T Consensus       228 ~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          228 KITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             CCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred             cEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence            99999999  69999998 699999999998874 33344556899999  999999999999999 898753

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-31  Score=265.36  Aligned_cols=235  Identities=9%  Similarity=0.055  Sum_probs=193.2

Q ss_pred             EECCCCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccC
Q 008467          282 DWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP  360 (564)
Q Consensus       282 ~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~  360 (564)
                      .+.+++.+|++|+.||.|++|+.. +.....+.  ..+|.++.|+|.   +++++.|++|++|+...             
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~-------------  104 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGN-------------  104 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTT-------------
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccC-------------
Confidence            345678899999999999999975 44444444  567888889988   99999999999998754             


Q ss_pred             eEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEec-CCCcceEEEEECC--CCCEEEEEeCCCcEEEEeCCCCeeeeec
Q 008467          361 TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDP--TGSLLASCSDDVTAKIWNMKQDKYVHDL  437 (564)
Q Consensus       361 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~h~~~i~~v~~~~--~~~~las~s~dg~i~iwd~~~~~~~~~~  437 (564)
                                         .+.+|+......+..+. +|.+.|.+++|+|  ++++|++|+.||+|++||+++++.+..+
T Consensus       105 -------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~  165 (343)
T 3lrv_A          105 -------------------QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVH  165 (343)
T ss_dssp             -------------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEE
T ss_pred             -------------------ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence                               34556666666555544 7888999999999  9999999999999999999999887655


Q ss_pred             c-cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEE-EEEeC-CCCCEEEEEEcCCCCEEEEEeCCC
Q 008467          438 R-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLL-YSLNG-HREPVYSLAFSPTGEYLASGSLDK  514 (564)
Q Consensus       438 ~-~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~-h~~~i~~~~~spdg~~lasgs~dg  514 (564)
                      . .|...+.+++|+|++.         +|++|+.||.|++||+++++.+ ..+.. |..+|++++|+|+|.+|++|+ |+
T Consensus       166 ~~~~~~~i~~~~~~pdg~---------~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~  235 (343)
T 3lrv_A          166 SAKSDVEYSSGVLHKDSL---------LLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQ  235 (343)
T ss_dssp             CCCSSCCCCEEEECTTSC---------EEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SS
T ss_pred             ecCCCCceEEEEECCCCC---------EEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CC
Confidence            3 3455899999999875         7999999999999999999877 78887 999999999999999999999 55


Q ss_pred             cEEEEeCCCCeEEEEEec---C-CCE--EEEEEccCCCEEEEEEc-CCcEEEEEee
Q 008467          515 SMHIWSLKEGKIVKTYTG---N-GGI--FEVCWNKEGDKIAACFA-NHTVCVLDFR  563 (564)
Q Consensus       515 ~i~iw~~~~~~~~~~~~~---~-~~i--~~~~w~~~g~~la~~~~-~~~v~v~~~~  563 (564)
                      .|++||+++++.+..+..   + ..+  ..++|+|+|++|++|+. ++.+.||++.
T Consensus       236 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~  291 (343)
T 3lrv_A          236 TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFD  291 (343)
T ss_dssp             BEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             eEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEc
Confidence            999999998876544321   1 112  46999999999999998 9999999874

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.98  E-value=1.3e-28  Score=249.06  Aligned_cols=273  Identities=12%  Similarity=0.140  Sum_probs=220.1

Q ss_pred             CEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEE-EEEeCCCeEEEEECC-C
Q 008467          229 SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL-ATGSYDGQARIWSTN-G  306 (564)
Q Consensus       229 ~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l-~sg~~dg~i~vw~~~-~  306 (564)
                      .++++++.|+.|++||+.+++.             .....     ....+.+++|+|+|+++ ++++.|+.|++|+.. +
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~-------------~~~~~-----~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~   64 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKV-------------TATIP-----VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN   64 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEE-------------EEEEE-----CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT
T ss_pred             EEEEEcCCCCEEEEEECCCCeE-------------EEEee-----cCCCcceEEECCCCCEEEEECCCCCeEEEEECCCC
Confidence            4688899999999999876532             11111     12458999999999976 677799999999975 4


Q ss_pred             ceeEeecCCCCCEEEEEeCCCCCEEE-EeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCc--eEEEEeCCCeEEE
Q 008467          307 DLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV--SFATSSTDNMIYV  383 (564)
Q Consensus       307 ~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~i~~  383 (564)
                      +....+..+. .+.+++|+|++++|+ +++.|+.|++||+.+++....+..+. .+..+.|.++.  .+++++.++.|++
T Consensus        65 ~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~~  142 (391)
T 1l0q_A           65 NVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK-SPLGLALSPDGKKLYVTNNGDKTVSV  142 (391)
T ss_dssp             EEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             eEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC-CcceEEECCCCCEEEEEeCCCCEEEE
Confidence            5555555554 899999999999875 55567999999999998877766543 56788887553  3467888999999


Q ss_pred             EEcCCCceeeEecCCCcceEEEEECCCCCEE-EEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCc
Q 008467          384 CKIGENRPIKTFAGHQGEVNCVKWDPTGSLL-ASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQ  462 (564)
Q Consensus       384 ~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l-as~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~  462 (564)
                      |++.+++.+..+..|. .+.+++|+|+++.| ++++.|+.|++||+++++.+..+. +...+.+++|+|++.        
T Consensus       143 ~d~~~~~~~~~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~--------  212 (391)
T 1l0q_A          143 INTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGT--------  212 (391)
T ss_dssp             EETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSS--------
T ss_pred             EECCCCcEEEEEecCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCC--------
Confidence            9999998888887664 56899999999877 677889999999999988776665 456789999999875        


Q ss_pred             EEEEEEe---CCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCeEEEEEecC
Q 008467          463 LILASAS---FDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYL-ASGSLDKSMHIWSLKEGKIVKTYTGN  533 (564)
Q Consensus       463 ~~l~s~s---~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~l-asgs~dg~i~iw~~~~~~~~~~~~~~  533 (564)
                       .|++++   .++.|++||+.+++.+..+..|. .+.+++|+|+|++| ++++.|+.|++||+.+++++..+..+
T Consensus       213 -~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~  285 (391)
T 1l0q_A          213 -KAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVG  285 (391)
T ss_dssp             -EEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred             -EEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECC
Confidence             455555   79999999999999988888765 57999999999987 67788999999999999998887643

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.98  E-value=4e-30  Score=265.52  Aligned_cols=237  Identities=14%  Similarity=0.126  Sum_probs=199.4

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEECC-Cc---eeEeec--------------------------------------
Q 008467          276 KDVTTLDWNGEGTLLATGSYDGQARIWSTN-GD---LKCTLS--------------------------------------  313 (564)
Q Consensus       276 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~---~~~~~~--------------------------------------  313 (564)
                      .++++++|+++|++|+++ .++.|++|+.. |.   ....+.                                      
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            468899999999966655 57899999953 44   333332                                      


Q ss_pred             ----------------CCCCCEEEEEeCCCCCEE-EEeeCCCcEEEEECC--CcceeEEEeecccCeEEEEcCCCceEEE
Q 008467          314 ----------------KHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVK--TEEWKQQFEFHSGPTLDVDWRNNVSFAT  374 (564)
Q Consensus       314 ----------------~h~~~V~~l~~~~~~~~l-~s~s~D~~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (564)
                                      .|.+.|.+++|+|++++| ++|+.|++|++||+.  ++.....+..                  
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~------------------  145 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKR------------------  145 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEE------------------
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeec------------------
Confidence                            344479999999999996 899999999999987  5544332211                  


Q ss_pred             EeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeee----ecccccccEEEEEEc
Q 008467          375 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH----DLREHSKEIYTIRWS  450 (564)
Q Consensus       375 ~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~----~~~~~~~~i~~i~~~  450 (564)
                                           .+|...|++++|+|++++|++|+.||.+++|++.+.....    .+.+|...|++++|+
T Consensus       146 ---------------------~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s  204 (450)
T 2vdu_B          146 ---------------------FCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLI  204 (450)
T ss_dssp             ---------------------EECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEE
T ss_pred             ---------------------ccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEc
Confidence                                 1456789999999999999999999999999998776544    778899999999999


Q ss_pred             cC---CCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEE-EeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE
Q 008467          451 PT---GSGTNNPNQQLILASASFDSTVKLWDVELGKLLYS-LNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI  526 (564)
Q Consensus       451 p~---~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~  526 (564)
                      |+   +.         +|++|+.|++|++||+.+++++.. +.+|..+|++++|+ +|++|++|+.|+.|++||+.++++
T Consensus       205 p~~~~~~---------~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~  274 (450)
T 2vdu_B          205 KDSDGHQ---------FIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKN  274 (450)
T ss_dssp             ECTTSCE---------EEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCE
T ss_pred             CCCCCCc---------EEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcE
Confidence            98   53         799999999999999999988877 56899999999999 999999999999999999999998


Q ss_pred             EEEEec--------------------------CCCEEEEEEccCCCEEEEEE-cCCcEEEEEe
Q 008467          527 VKTYTG--------------------------NGGIFEVCWNKEGDKIAACF-ANHTVCVLDF  562 (564)
Q Consensus       527 ~~~~~~--------------------------~~~i~~~~w~~~g~~la~~~-~~~~v~v~~~  562 (564)
                      +..+..                          ...+..++|+|+|++|++++ .++.|.||++
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          275 LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             EEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred             eeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence            888752                          23588999999999999998 8999999998

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=1.5e-29  Score=242.13  Aligned_cols=274  Identities=14%  Similarity=0.141  Sum_probs=188.1

Q ss_pred             CCeEEEEECCCCC---EEEEEeCCCeEEEEECC-C---ceeEeecCCCCCEEEEEeCCCCCEEEE---------------
Q 008467          276 KDVTTLDWNGEGT---LLATGSYDGQARIWSTN-G---DLKCTLSKHKGPIFSLKWNKKGDYLLT---------------  333 (564)
Q Consensus       276 ~~V~~l~~s~~g~---~l~sg~~dg~i~vw~~~-~---~~~~~~~~h~~~V~~l~~~~~~~~l~s---------------  333 (564)
                      -+|.++-|-..|.   .+++++. ..|++|+.. +   +...+...|..+|..+.+.|+...|+.               
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla  118 (356)
T 2w18_A           40 VDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALF  118 (356)
T ss_dssp             EEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEEC
T ss_pred             EEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEE
Confidence            3577888877554   5666664 699999965 3   456677788877777766664322211               


Q ss_pred             -eeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEe---CCCeEEEEEcCC-CceeeEecCCCcceEEEEEC
Q 008467          334 -GSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSS---TDNMIYVCKIGE-NRPIKTFAGHQGEVNCVKWD  408 (564)
Q Consensus       334 -~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~i~~~~~~~-~~~~~~~~~h~~~i~~v~~~  408 (564)
                       +..|+++..|.+..+        +...+..+   ++..++.++   .|+.|++|++.. ++.+..+.+|...++.++|+
T Consensus       119 ~spd~~~~~~~l~s~g--------~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs  187 (356)
T 2w18_A          119 CSSDDESEKQVLLKSG--------NIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFA  187 (356)
T ss_dssp             C------CCEEEEEEE--------EEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEE
T ss_pred             ECCCccccccEEEeCC--------CeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEee
Confidence             111111111111111        11111111   233444443   499999999954 67778888999999999999


Q ss_pred             C---CCCEEEEEeCCCcEEEEeCCCCeeeeecccccc---cEEEEEEccCCCCC---CCCCCcEEEEEEeCCCeEEEEeC
Q 008467          409 P---TGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK---EIYTIRWSPTGSGT---NNPNQQLILASASFDSTVKLWDV  479 (564)
Q Consensus       409 ~---~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~---~i~~i~~~p~~~~~---~~~~~~~~l~s~s~dg~i~iwd~  479 (564)
                      |   ++.+||+||.|++|+|||++++++++++.+|..   .+.+++|+|++...   ..+.....+++|+.|++|++||.
T Consensus       188 ~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~  267 (356)
T 2w18_A          188 EVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINP  267 (356)
T ss_dssp             EEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEET
T ss_pred             ccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEEC
Confidence            9   789999999999999999999999999986543   56777899987411   01111123688999999999999


Q ss_pred             CCCeEEEEE-----eCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCC-CEE-EEEEccCCCEEEEEE
Q 008467          480 ELGKLLYSL-----NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIF-EVCWNKEGDKIAACF  552 (564)
Q Consensus       480 ~~~~~~~~~-----~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~-~i~-~~~w~~~g~~la~~~  552 (564)
                      .+++.+..+     .+|...+.+..++  +.++|+|+.|++|+|||+.+|++++++.++. .+. .++|+|||++||+|+
T Consensus       268 ~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS  345 (356)
T 2w18_A          268 KTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQ  345 (356)
T ss_dssp             TTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEEC
T ss_pred             CCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEE
Confidence            999987765     4676666555554  8899999999999999999999999998654 344 689999999999999


Q ss_pred             cCCcEEEEEee
Q 008467          553 ANHTVCVLDFR  563 (564)
Q Consensus       553 ~~~~v~v~~~~  563 (564)
                      .|++|+|||+.
T Consensus       346 ~D~TIklWd~~  356 (356)
T 2w18_A          346 KDGNIFVYHYS  356 (356)
T ss_dssp             TTSCEEEEEEC
T ss_pred             CCCcEEEecCC
Confidence            99999999974

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=1.4e-28  Score=248.81  Aligned_cols=263  Identities=13%  Similarity=0.117  Sum_probs=221.9

Q ss_pred             CEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEE-EEeeCCCcEEEEECCCcceeEEEeecccCeEEEE
Q 008467          288 TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD  365 (564)
Q Consensus       288 ~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~  365 (564)
                      .++++++.|+.|++|+.. +.....+..|. .+.+++|+|+++++ ++++.|++|++||+.+++....+..+. .+..+.
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~   80 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA   80 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceE
Confidence            468889999999999976 45555666664 58999999999987 677799999999999999888777655 778888


Q ss_pred             cCCCc--eEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEE-EEEeCCCcEEEEeCCCCeeeeecccccc
Q 008467          366 WRNNV--SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL-ASCSDDVTAKIWNMKQDKYVHDLREHSK  442 (564)
Q Consensus       366 ~~~~~--~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l-as~s~dg~i~iwd~~~~~~~~~~~~~~~  442 (564)
                      |.++.  .+++++.++.|++|++..++.+..+..| ..+.+++|+|+++.| ++++.|+.|++||+.+++.+..+..+ .
T Consensus        81 ~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~  158 (391)
T 1l0q_A           81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-R  158 (391)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-S
T ss_pred             ECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-C
Confidence            87554  3456667899999999999888877755 467999999999977 78888999999999999888877665 4


Q ss_pred             cEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe---CCCcEEEE
Q 008467          443 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGS---LDKSMHIW  519 (564)
Q Consensus       443 ~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs---~dg~i~iw  519 (564)
                      .+.+++|+|++.        .++++++.|+.|++||+++++.+..+. +...+.+++|+|+|++|++++   .++.|++|
T Consensus       159 ~~~~~~~~~dg~--------~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~  229 (391)
T 1l0q_A          159 SPKGIAVTPDGT--------KVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMI  229 (391)
T ss_dssp             SEEEEEECTTSS--------EEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEE
T ss_pred             CcceEEECCCCC--------EEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEE
Confidence            569999999874        355788899999999999999887776 456789999999999999888   68999999


Q ss_pred             eCCCCeEEEEEecCCCEEEEEEccCCCEE-EEEEcCCcEEEEEee
Q 008467          520 SLKEGKIVKTYTGNGGIFEVCWNKEGDKI-AACFANHTVCVLDFR  563 (564)
Q Consensus       520 ~~~~~~~~~~~~~~~~i~~~~w~~~g~~l-a~~~~~~~v~v~~~~  563 (564)
                      |+.+++.+..+..+..+..++|+|+|++| +++..++.|.|||++
T Consensus       230 d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~  274 (391)
T 1l0q_A          230 DTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTA  274 (391)
T ss_dssp             ETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             ECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence            99999999998888889999999999988 566779999999974

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=8.7e-29  Score=253.97  Aligned_cols=282  Identities=13%  Similarity=0.097  Sum_probs=226.2

Q ss_pred             cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC
Q 008467          217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD  296 (564)
Q Consensus       217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d  296 (564)
                      ..+.+++|+|++.++++++.|+.|++||+.++....            .........+...|.+++|++++.++++++.|
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d  190 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVR------------LSPPEKYKKKLGFVETISIPEHNELWVSQMQA  190 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEE------------ECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG
T ss_pred             CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEee------------ecCcccccccCCceeEEEEcCCCEEEEEECCC
Confidence            446689999987888888899999999988764210            00011123456789999999999999999999


Q ss_pred             CeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEE-EeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCc-eEE
Q 008467          297 GQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV-SFA  373 (564)
Q Consensus       297 g~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  373 (564)
                      +.|++|+... .....+..|...+.+++|+|++++++ +++.|++|++||+++++....+..+. .+..+.|.++. .++
T Consensus       191 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~  269 (433)
T 3bws_A          191 NAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIG-LPRGLLLSKDGKELY  269 (433)
T ss_dssp             TEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCS-EEEEEEECTTSSEEE
T ss_pred             CEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCC-CceEEEEcCCCCEEE
Confidence            9999999764 56677788999999999999999885 55589999999999988877665543 46777886554 555


Q ss_pred             EEe--------CCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCE-EEEEeCCCcEEEEeCCCCeeeeecccccccE
Q 008467          374 TSS--------TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSL-LASCSDDVTAKIWNMKQDKYVHDLREHSKEI  444 (564)
Q Consensus       374 ~~~--------~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~-las~s~dg~i~iwd~~~~~~~~~~~~~~~~i  444 (564)
                      +++        .|+.|++|++..++.+..+ .|...+.+++|+|+++. +++++.|+.|++||+.+++.+..+. +...+
T Consensus       270 ~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~  347 (433)
T 3bws_A          270 IAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKP  347 (433)
T ss_dssp             EEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSE
T ss_pred             EEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCC
Confidence            554        5889999999888776654 56668899999999974 5777899999999999988877665 66789


Q ss_pred             EEEEEccCCCCCCCCCCcEEEEEEeC---------------CCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEE
Q 008467          445 YTIRWSPTGSGTNNPNQQLILASASF---------------DSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS  509 (564)
Q Consensus       445 ~~i~~~p~~~~~~~~~~~~~l~s~s~---------------dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~las  509 (564)
                      .+++|+|++.         +|++++.               ||.|++||+.+++.+..+..+ ..+.+++|+|+|++|++
T Consensus       348 ~~~~~s~dg~---------~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~  417 (433)
T 3bws_A          348 NTIALSPDGK---------YLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSPDNRYLVI  417 (433)
T ss_dssp             EEEEECTTSS---------EEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECTTSCEEEE
T ss_pred             CeEEEcCCCC---------EEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcCCCCEEEE
Confidence            9999999875         4555554               679999999999998888764 57899999999999998


Q ss_pred             EeC-CCcEEEEeCCC
Q 008467          510 GSL-DKSMHIWSLKE  523 (564)
Q Consensus       510 gs~-dg~i~iw~~~~  523 (564)
                      ++. |+.|++|++..
T Consensus       418 ~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          418 SDFLDHQIRVYRRDG  432 (433)
T ss_dssp             EETTTTEEEEEEETT
T ss_pred             EECCCCeEEEEEecC
Confidence            875 99999999863

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=3.4e-30  Score=260.98  Aligned_cols=275  Identities=14%  Similarity=0.161  Sum_probs=190.9

Q ss_pred             CeEEEEEC---CCCCEEEEEeCCCeEEEEECCCc-------e---eEeecCCCCCEEEEEeC------------------
Q 008467          277 DVTTLDWN---GEGTLLATGSYDGQARIWSTNGD-------L---KCTLSKHKGPIFSLKWN------------------  325 (564)
Q Consensus       277 ~V~~l~~s---~~g~~l~sg~~dg~i~vw~~~~~-------~---~~~~~~h~~~V~~l~~~------------------  325 (564)
                      ...++.|.   +++..++.++.++.|++|+....       .   ......+..++..+.|+                  
T Consensus        17 ~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (393)
T 4gq1_A           17 RPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNS   96 (393)
T ss_dssp             CEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------
T ss_pred             CCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceee
Confidence            45667774   33333444456888999964210       0   01112234445554444                  


Q ss_pred             --CCCCEEEEeeCCCcEEEEECCCcceeEE-----EeecccCeEEEEcC---------CCceEEEEeCCCeEEEEEcCCC
Q 008467          326 --KKGDYLLTGSCDKTAIVWDVKTEEWKQQ-----FEFHSGPTLDVDWR---------NNVSFATSSTDNMIYVCKIGEN  389 (564)
Q Consensus       326 --~~~~~l~s~s~D~~v~iwd~~~~~~~~~-----~~~~~~~~~~~~~~---------~~~~~~~~~~d~~i~~~~~~~~  389 (564)
                        +++.+|++++.|++|+|||++++.....     +..|.+.+.++.|.         +...+++++.|++|++|++...
T Consensus        97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~  176 (393)
T 4gq1_A           97 SPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE  176 (393)
T ss_dssp             CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT
T ss_pred             cCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC
Confidence              4556799999999999999988865432     45688899999996         3467899999999999999988


Q ss_pred             ceeeEecCCCcceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeeeeec-------------------------cccccc
Q 008467          390 RPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQDKYVHDL-------------------------REHSKE  443 (564)
Q Consensus       390 ~~~~~~~~h~~~i~~v~~~~~~~-~las~s~dg~i~iwd~~~~~~~~~~-------------------------~~~~~~  443 (564)
                      .++..+.+|...|.+++|+|++. +|++|+.|++|++||+++++.....                         .+|...
T Consensus       177 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  256 (393)
T 4gq1_A          177 GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASS  256 (393)
T ss_dssp             EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSS
T ss_pred             ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccccc
Confidence            88888889999999999999875 7999999999999999876543221                         345667


Q ss_pred             EEEEEEc-cCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcC--------------------
Q 008467          444 IYTIRWS-PTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSP--------------------  502 (564)
Q Consensus       444 i~~i~~~-p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp--------------------  502 (564)
                      +.++.|. |++.         .|++++.|+++++||+..++....+..|...+..+.++|                    
T Consensus       257 v~~v~~~~~dg~---------~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (393)
T 4gq1_A          257 LANVRWIGSDGS---------GILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRY  327 (393)
T ss_dssp             CSEEEEETTTTC---------EEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSC
T ss_pred             ceeeeeecCCCC---------EEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCC
Confidence            7778876 4543         689999999999999998877776666655555444433                    


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEEe-cCCCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467          503 TGEYLASGSLDKSMHIWSLKEGKIVKTYT-GNGGIFEVCWNKEGDKIAACFANHTVCVLD  561 (564)
Q Consensus       503 dg~~lasgs~dg~i~iw~~~~~~~~~~~~-~~~~i~~~~w~~~g~~la~~~~~~~v~v~~  561 (564)
                      ++.++++|+.||.|++||+.+++.+.... +...|.+++|+|||++||+++.+| +.+|.
T Consensus       328 ~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvr  386 (393)
T 4gq1_A          328 MDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTR  386 (393)
T ss_dssp             TTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEE
T ss_pred             CCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEE
Confidence            34477889999999999999988766554 456799999999999999998765 55554

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=4.7e-30  Score=245.61  Aligned_cols=187  Identities=17%  Similarity=0.198  Sum_probs=140.3

Q ss_pred             CCCEEEEEe--CCCeEEEEEC--CCceeEeecCCCCCEEEEEeCC---CCCEEEEeeCCCcEEEEECCCcceeEEEeecc
Q 008467          286 EGTLLATGS--YDGQARIWST--NGDLKCTLSKHKGPIFSLKWNK---KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS  358 (564)
Q Consensus       286 ~g~~l~sg~--~dg~i~vw~~--~~~~~~~~~~h~~~V~~l~~~~---~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~  358 (564)
                      +|+++.+++  .|+.|++|+.  +|+.+..+..|...+..++|++   ++..|++++.|++|+|||+.+++++..+..+.
T Consensus       144 ~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~  223 (356)
T 2w18_A          144 KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDD  223 (356)
T ss_dssp             TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC
T ss_pred             CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCC
Confidence            445555533  5888888886  3566677788999999999999   77999999999999999999988776654321


Q ss_pred             cCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEE------------EEEeCCCcEEEE
Q 008467          359 GPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL------------ASCSDDVTAKIW  426 (564)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l------------as~s~dg~i~iw  426 (564)
                      .                                      |...+.+++|+|+|+++            ++|+.|++|++|
T Consensus       224 ~--------------------------------------~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklW  265 (356)
T 2w18_A          224 S--------------------------------------YQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVI  265 (356)
T ss_dssp             -----------------------------------------CCCEEEEEEETTEEEEEEC------------CCEEEEEE
T ss_pred             c--------------------------------------ceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEE
Confidence            1                                      11245566677766654            778999999999


Q ss_pred             eCCCCeeeeec-----ccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEE-EEEE
Q 008467          427 NMKQDKYVHDL-----REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVY-SLAF  500 (564)
Q Consensus       427 d~~~~~~~~~~-----~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~-~~~~  500 (564)
                      |..+++.+..+     .+|...+.+..++  +.         ++++|+.|++|+|||+.+++++.++.+|...+. +++|
T Consensus       266 d~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~---------~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vaf  334 (356)
T 2w18_A          266 NPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DH---------CAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKW  334 (356)
T ss_dssp             ETTTTEEEEEEEECCCTTCCCCEEEEEEE--TT---------EEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEE
T ss_pred             ECCCCEEEEEEEeeccCCCcceeEccccC--CC---------EEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEE
Confidence            99999877654     2455444444433  21         689999999999999999999999999987655 5899


Q ss_pred             cCCCCEEEEEeCCCcEEEEeC
Q 008467          501 SPTGEYLASGSLDKSMHIWSL  521 (564)
Q Consensus       501 spdg~~lasgs~dg~i~iw~~  521 (564)
                      ||||++||+|+.|++|+|||+
T Consensus       335 SPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          335 SGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             CSSSSEEEEECTTSCEEEEEE
T ss_pred             CCCCCEEEEEECCCcEEEecC
Confidence            999999999999999999985

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.97  E-value=7.6e-28  Score=252.87  Aligned_cols=312  Identities=12%  Similarity=0.106  Sum_probs=242.4

Q ss_pred             EECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 008467          223 AWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIW  302 (564)
Q Consensus       223 ~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw  302 (564)
                      +|+|++.++++++.|++|.+||..+++..             .....     ...+..++|+|+|++|++++.|+.|++|
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~-------------~~i~~-----g~~~~~v~~spdg~~l~v~~~d~~V~v~  205 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIV-------------KVIDT-----GYAVHISRMSASGRYLLVIGRDARIDMI  205 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEE-------------EEEEC-----STTEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEE-------------EEEec-----CcccceEEECCCCCEEEEECCCCeEEEE
Confidence            38999999999999999999998776421             11111     1228899999999999999999999999


Q ss_pred             EC--C-CceeEeecCCCCCEEEEEeCC----CCCEEEEee-CCCcEEEEECCCcceeEEEeecc----------c-CeEE
Q 008467          303 ST--N-GDLKCTLSKHKGPIFSLKWNK----KGDYLLTGS-CDKTAIVWDVKTEEWKQQFEFHS----------G-PTLD  363 (564)
Q Consensus       303 ~~--~-~~~~~~~~~h~~~V~~l~~~~----~~~~l~s~s-~D~~v~iwd~~~~~~~~~~~~~~----------~-~~~~  363 (564)
                      |.  . +.....+. +...+.+++|+|    +|+++++++ .+++|.+||..+++.+..+..+.          . .+..
T Consensus       206 D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~  284 (543)
T 1nir_A          206 DLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAA  284 (543)
T ss_dssp             ETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEE
T ss_pred             ECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEE
Confidence            98  3 45555665 445579999999    999999888 48999999999999888776422          2 3555


Q ss_pred             EEcCC--CceEEEEeCCCeEEEEEcCCCceee--EecCCCcceEEEEECCCCCEEEE-EeCCCcEEEEeCCCCeeeeecc
Q 008467          364 VDWRN--NVSFATSSTDNMIYVCKIGENRPIK--TFAGHQGEVNCVKWDPTGSLLAS-CSDDVTAKIWNMKQDKYVHDLR  438 (564)
Q Consensus       364 ~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~--~~~~h~~~i~~v~~~~~~~~las-~s~dg~i~iwd~~~~~~~~~~~  438 (564)
                      +.+..  ...+++...++.|.+|+....+.+.  .+ .+...+..++|+|+|++|++ +..+++|.+||..+++++..+.
T Consensus       285 i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~  363 (543)
T 1nir_A          285 IIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD  363 (543)
T ss_dssp             EEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             EEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeec
Confidence            65543  4456777889999999998765433  33 35566888999999997655 4568999999999999887765


Q ss_pred             c----ccccEEEEEEccCCCCCCCCCCcEEEEEEe-CCCeEEEEeCCC-------CeEEEEEeCCCCCEEEEEEcCCCCE
Q 008467          439 E----HSKEIYTIRWSPTGSGTNNPNQQLILASAS-FDSTVKLWDVEL-------GKLLYSLNGHREPVYSLAFSPTGEY  506 (564)
Q Consensus       439 ~----~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~-------~~~~~~~~~h~~~i~~~~~spdg~~  506 (564)
                      .    |......+ ++|++.        .++++++ .|++|++||+.+       .+++.++.+|...+..|+|+|||++
T Consensus       364 ~g~~ph~g~g~~~-~~p~~g--------~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~  434 (543)
T 1nir_A          364 VGKTPHPGRGANF-VHPKYG--------PVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSH  434 (543)
T ss_dssp             CSSSBCCTTCEEE-EETTTE--------EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCE
T ss_pred             cCCCCCCCCCccc-CCCCCc--------cEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCc
Confidence            3    54433333 345432        3677776 689999999998       8999999999888899999999999


Q ss_pred             EEEEe-------CCCcEEEEeCCCCeEE-EEE---------ecCCCEEEEEEccCCCEEEEEEc-----CCcEEEEEee
Q 008467          507 LASGS-------LDKSMHIWSLKEGKIV-KTY---------TGNGGIFEVCWNKEGDKIAACFA-----NHTVCVLDFR  563 (564)
Q Consensus       507 lasgs-------~dg~i~iw~~~~~~~~-~~~---------~~~~~i~~~~w~~~g~~la~~~~-----~~~v~v~~~~  563 (564)
                      |++++       .+++|.+||+.+++.. ..+         .+...+..++|+|+|+.|.++..     ++.|.|||.+
T Consensus       435 l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~  513 (543)
T 1nir_A          435 LYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDK  513 (543)
T ss_dssp             EEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETT
T ss_pred             EEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECC
Confidence            99987       2679999999999876 554         22346889999999999997743     6899999864

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=5.7e-28  Score=246.14  Aligned_cols=299  Identities=15%  Similarity=0.159  Sum_probs=224.4

Q ss_pred             cceEEEEECCCC-CEEEEEE----CCC----cEEEEeC--CCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC
Q 008467          217 SEVCACAWSPAG-SLLASGS----GDS----TARIWTI--ADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG  285 (564)
Q Consensus       217 ~~V~~~~~sp~~-~~lasgs----~D~----~i~iW~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~  285 (564)
                      ..|...+|++.| .++++|+    .||    .++|||+  .+++...           .....+    +...+..+++++
T Consensus        63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~-----------~~~~~~----~~~~~~~~~~~~  127 (415)
T 2hqs_A           63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLA-----------QNSYKV----NKQWLRYAGHTA  127 (415)
T ss_dssp             GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEE-----------EEEEEE----CGGGHHHHHHHH
T ss_pred             cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEe-----------eeEEEc----ChhHHHHHHHHH
Confidence            456778899987 4777887    568    8999999  7654210           011111    112233333332


Q ss_pred             --------------CCCEEEEEeCC------CeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCC---cEEE
Q 008467          286 --------------EGTLLATGSYD------GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK---TAIV  342 (564)
Q Consensus       286 --------------~g~~l~sg~~d------g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~---~v~i  342 (564)
                                    .+..++.++.+      +.|++||.++.....+..|...|.+++|+|+|++|++++.|+   .|++
T Consensus       128 ~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~  207 (415)
T 2hqs_A          128 SDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVI  207 (415)
T ss_dssp             HHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred             HHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEE
Confidence                          25666666654      799999998877778888999999999999999999999885   9999


Q ss_pred             EECCCcceeEEEeecccCeEEEEcCCCce-EE-EEeCCC--eEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEe
Q 008467          343 WDVKTEEWKQQFEFHSGPTLDVDWRNNVS-FA-TSSTDN--MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS  418 (564)
Q Consensus       343 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~d~--~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s  418 (564)
                      ||+.+++.. .+..+...+..+.|.++.. ++ +++.++  .|++|++.+++. ..+..|...+.+++|+|||+.|++++
T Consensus       208 ~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s  285 (415)
T 2hqs_A          208 QTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTS  285 (415)
T ss_dssp             EETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEE
T ss_pred             EECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEE
Confidence            999998775 4555667788999986653 44 455444  599999987665 56778888999999999999988888


Q ss_pred             C-CC--cEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC---CeEEEEeCCCCeEEEEEeCCC
Q 008467          419 D-DV--TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD---STVKLWDVELGKLLYSLNGHR  492 (564)
Q Consensus       419 ~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~h~  492 (564)
                      . ++  .|.+||+.++.. ..+..+...+.+++|+|+|.         +|++++.+   ..|++||+.+++. ..+..+.
T Consensus       286 ~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~---------~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~  354 (415)
T 2hqs_A          286 DQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGK---------FMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF  354 (415)
T ss_dssp             CTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSS---------EEEEEEECSSCEEEEEEETTTCCE-EECCCSS
T ss_pred             CCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCC---------EEEEEECcCCceEEEEEECCCCCE-EEecCCC
Confidence            6 45  677779887764 34556777889999999886         45555543   5899999998876 3565554


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCeEEEEEec-CCCEEEEEEccCC
Q 008467          493 EPVYSLAFSPTGEYLASGSLDK---SMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEG  545 (564)
Q Consensus       493 ~~i~~~~~spdg~~lasgs~dg---~i~iw~~~~~~~~~~~~~-~~~i~~~~w~~~g  545 (564)
                       .+.+++|+|||++|++++.++   .|++||+..+. ...+.. .+.|.+++|+|.-
T Consensus       355 -~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~-~~~l~~~~~~v~~~~~~~~~  409 (415)
T 2hqs_A          355 -LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARLPATDGQVKFPAWSPYL  409 (415)
T ss_dssp             -SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC-EEECCCSSSEEEEEEECCCC
T ss_pred             -CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc-EEEeeCCCCCCcCCcccccc
Confidence             899999999999999988877   79999997554 455554 4679999999964

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.96  E-value=1.4e-27  Score=262.21  Aligned_cols=333  Identities=15%  Similarity=0.141  Sum_probs=239.2

Q ss_pred             cceEEEEECCCCCEEEEEEC-CC-----cEEEEeCCCCCCCCCCCCCCce----EEEE--Eeeccccc-cCCCCeEEEEE
Q 008467          217 SEVCACAWSPAGSLLASGSG-DS-----TARIWTIADGTSNGGAQNGPLN----VLVL--KHVKGRTN-EKSKDVTTLDW  283 (564)
Q Consensus       217 ~~V~~~~~sp~~~~lasgs~-D~-----~i~iW~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~-~~~~~V~~l~~  283 (564)
                      ..|.+++|||||++|++++. |+     .|++||+.++............    .+..  ........ .....|.+++|
T Consensus        37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  116 (741)
T 2ecf_A           37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW  116 (741)
T ss_dssp             CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred             CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence            46889999999999999998 88     8999999876421100000000    0000  00000000 00023788999


Q ss_pred             CCCCCEEEEEeCCCeEEEEECCCc---eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccC
Q 008467          284 NGEGTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP  360 (564)
Q Consensus       284 s~~g~~l~sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~  360 (564)
                      ||||++|++++. +.|++|+..+.   ....+..|...+.+++|+|+|++|++++ ++.|++||+.+++.......+...
T Consensus       117 SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~  194 (741)
T 2ecf_A          117 SPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTT  194 (741)
T ss_dssp             CTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSS
T ss_pred             CCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccc
Confidence            999999999987 99999998876   6667778889999999999999999887 569999999988765543333221


Q ss_pred             ----------------eEEEEcCCCc-eEEEEeCCC---------------------------------eEEEEEcCC-C
Q 008467          361 ----------------TLDVDWRNNV-SFATSSTDN---------------------------------MIYVCKIGE-N  389 (564)
Q Consensus       361 ----------------~~~~~~~~~~-~~~~~~~d~---------------------------------~i~~~~~~~-~  389 (564)
                                      +..+.|.++. .++.++.|+                                 .|++|++.+ +
T Consensus       195 ~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~  274 (741)
T 2ecf_A          195 IGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQA  274 (741)
T ss_dssp             EEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTC
T ss_pred             eeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCC
Confidence                            2557787554 455554443                                 788888877 6


Q ss_pred             ceeeEec--CCCcceEEEEECCCCCEEEEEeC-----CCcEEEEeCCCCeeeeecccccc----cEEEEEEccCCCCCCC
Q 008467          390 RPIKTFA--GHQGEVNCVKWDPTGSLLASCSD-----DVTAKIWNMKQDKYVHDLREHSK----EIYTIRWSPTGSGTNN  458 (564)
Q Consensus       390 ~~~~~~~--~h~~~i~~v~~~~~~~~las~s~-----dg~i~iwd~~~~~~~~~~~~~~~----~i~~i~~~p~~~~~~~  458 (564)
                      +......  .|...+.+++| |||+.|++++.     +..|++||+.+++....+..+..    .+..+.|+|+|.    
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~----  349 (741)
T 2ecf_A          275 QTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGS----  349 (741)
T ss_dssp             CCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSC----
T ss_pred             ceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCe----
Confidence            6554433  47788999999 99999887653     56899999999887666555443    345788999875    


Q ss_pred             CCCcEEEEEEeCCCeEEEEeCC-CCeEEEEEeCCCCCEEEE-EEcCCCCEEEE-EeCCC--cEEEEeCCC-CeEEEEEec
Q 008467          459 PNQQLILASASFDSTVKLWDVE-LGKLLYSLNGHREPVYSL-AFSPTGEYLAS-GSLDK--SMHIWSLKE-GKIVKTYTG  532 (564)
Q Consensus       459 ~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~h~~~i~~~-~~spdg~~las-gs~dg--~i~iw~~~~-~~~~~~~~~  532 (564)
                           ++++++.||.++||.+. .+. ...+..|...|.++ +|||||++|+. ++.++  .++||++.. +.....+..
T Consensus       350 -----~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~  423 (741)
T 2ecf_A          350 -----ILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK  423 (741)
T ss_dssp             -----EEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC
T ss_pred             -----EEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc
Confidence                 67888999988888765 355 77788888888887 59999998754 55555  899999864 565666666


Q ss_pred             CCCEEEEEEccCCCEEEEEEcC----CcEEEEEe
Q 008467          533 NGGIFEVCWNKEGDKIAACFAN----HTVCVLDF  562 (564)
Q Consensus       533 ~~~i~~~~w~~~g~~la~~~~~----~~v~v~~~  562 (564)
                      ...+..++|+|||++|++.+.+    ..+.+++.
T Consensus       424 ~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~  457 (741)
T 2ecf_A          424 APGMHSASFARNASVYVDSWSNNSTPPQIELFRA  457 (741)
T ss_dssp             SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEET
T ss_pred             CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEc
Confidence            6778999999999999877654    34566653

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.95  E-value=8.8e-26  Score=256.80  Aligned_cols=323  Identities=11%  Similarity=0.077  Sum_probs=236.3

Q ss_pred             CceeEccCCccceEEEEECCCCCEEEEEECC------CcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCe--
Q 008467          207 SDVTILEGHTSEVCACAWSPAGSLLASGSGD------STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDV--  278 (564)
Q Consensus       207 ~~~~~l~~h~~~V~~~~~sp~~~~lasgs~D------~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V--  278 (564)
                      .....+.+|...|.+++|||||++||+++.+      ..|++|++.++..              ...    ..+...+  
T Consensus        43 g~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~--------------~~l----t~~~~~~~~  104 (1045)
T 1k32_A           43 GSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI--------------KRI----TYFSGKSTG  104 (1045)
T ss_dssp             CCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE--------------EEC----CCCCEEEET
T ss_pred             CcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCe--------------EEc----ccCCCcccc
Confidence            3456677899999999999999999988643      4799999876431              111    1122334  


Q ss_pred             -----EEEEECCCCCEEEEEeCC------CeEEEEECCCcee--------------------------------------
Q 008467          279 -----TTLDWNGEGTLLATGSYD------GQARIWSTNGDLK--------------------------------------  309 (564)
Q Consensus       279 -----~~l~~s~~g~~l~sg~~d------g~i~vw~~~~~~~--------------------------------------  309 (564)
                           ..++|||||+++++++.+      ..|.+|+..+...                                      
T Consensus       105 ~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~  184 (1045)
T 1k32_A          105 RRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTR  184 (1045)
T ss_dssp             TEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTC
T ss_pred             cccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCc
Confidence                 889999999987887754      3577776543221                                      


Q ss_pred             ------------EeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC-cceeEEEeecccCeEEEEcCCCceEEEEe
Q 008467          310 ------------CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT-EEWKQQFEFHSGPTLDVDWRNNVSFATSS  376 (564)
Q Consensus       310 ------------~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (564)
                                  ..+.+|...+.++.|+++ ..+++++.|+++.||.+.. +.....+..+. .+....|.++...++.+
T Consensus       185 ~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~  262 (1045)
T 1k32_A          185 GKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS  262 (1045)
T ss_dssp             CEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE
T ss_pred             CCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE
Confidence                        122456778888889887 5667778889999997653 22333333333 23334555444333333


Q ss_pred             CCCeEEEEEcCCCceeeEecC-----------CCcceEEEEEC-CCCCEEEEEeCCCcEEEEeCCCCeeeeecccccc-c
Q 008467          377 TDNMIYVCKIGENRPIKTFAG-----------HQGEVNCVKWD-PTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK-E  443 (564)
Q Consensus       377 ~d~~i~~~~~~~~~~~~~~~~-----------h~~~i~~v~~~-~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~-~  443 (564)
                      .++.|++|+... ..+..+.+           |...+.+++|+ |||+.|++++ ++.+.+|+..++... .+..|.. .
T Consensus       263 ~~~~i~~~d~~~-~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~  339 (1045)
T 1k32_A          263 KGGSIYIFNPDT-EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIR  339 (1045)
T ss_dssp             ETTEEEEECTTT-CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEE
T ss_pred             eCCEEEEecCCc-eEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcce
Confidence            589999999843 33445544           34578999999 9999999888 789999999877654 4566776 8


Q ss_pred             EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEE-EEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 008467          444 IYTIRWSPTGSGTNNPNQQLILASASFDSTVK-LWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK  522 (564)
Q Consensus       444 i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~-iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~  522 (564)
                      +..+.|+ ++.         .|++++.++.+. +||+..++.. .+.+|...+..++|||||++||+++.++.|++||+.
T Consensus       340 ~~~~~~s-dg~---------~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~  408 (1045)
T 1k32_A          340 YVRRGGD-TKV---------AFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE  408 (1045)
T ss_dssp             EEEECSS-SEE---------EEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             EEeeeEc-CCC---------eEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECC
Confidence            8999998 764         577777788888 9999877654 444787889999999999999999999999999999


Q ss_pred             CCeEEEEEec-CCCEEEEEEccCCCEEEEEEcCC----------cEEEEEee
Q 008467          523 EGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANH----------TVCVLDFR  563 (564)
Q Consensus       523 ~~~~~~~~~~-~~~i~~~~w~~~g~~la~~~~~~----------~v~v~~~~  563 (564)
                      ++++...... .+.+..++|+|||++||+++.++          .|.+||+.
T Consensus       409 tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~  460 (1045)
T 1k32_A          409 TGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME  460 (1045)
T ss_dssp             TCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred             CCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECC
Confidence            9998877744 45578999999999999887654          89999864

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.94  E-value=1.9e-25  Score=254.00  Aligned_cols=337  Identities=13%  Similarity=0.126  Sum_probs=247.1

Q ss_pred             ceeEccCCccce-------EEEEECCCCCEEEEEECC------CcEEEEeCCCCCCCCCCCC------------------
Q 008467          208 DVTILEGHTSEV-------CACAWSPAGSLLASGSGD------STARIWTIADGTSNGGAQN------------------  256 (564)
Q Consensus       208 ~~~~l~~h~~~V-------~~~~~sp~~~~lasgs~D------~~i~iW~~~~~~~~~~~~~------------------  256 (564)
                      ....|.+|...+       ..++|||||+++++++.+      ..+.+|++.++....-...                  
T Consensus        91 ~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~  170 (1045)
T 1k32_A           91 EIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNT  170 (1045)
T ss_dssp             EEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESC
T ss_pred             CeEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccC
Confidence            345677888888       999999999988888755      3577777755432100000                  


Q ss_pred             ------------CCceEEEEEe--eccccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEC--CCceeEeecCCCCCEE
Q 008467          257 ------------GPLNVLVLKH--VKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST--NGDLKCTLSKHKGPIF  320 (564)
Q Consensus       257 ------------~~~~~~~~~~--~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~--~~~~~~~~~~h~~~V~  320 (564)
                                  .....+....  .......+...+.++.|+++ .++++++.+|.++||..  .+.....+..|. .+.
T Consensus       171 ~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~  248 (1045)
T 1k32_A          171 FELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYY  248 (1045)
T ss_dssp             SCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSC
T ss_pred             CCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-Ccc
Confidence                        0000010000  00011245677899999998 77778888899999974  355555566665 356


Q ss_pred             EEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEee-----------cccCeEEEEcC-CCce-EEEEeCCCeEEEEEcC
Q 008467          321 SLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF-----------HSGPTLDVDWR-NNVS-FATSSTDNMIYVCKIG  387 (564)
Q Consensus       321 ~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-----------~~~~~~~~~~~-~~~~-~~~~~~d~~i~~~~~~  387 (564)
                      .++|+|+|++|+++ .++.|.+||+....+. .+..           +...+..+.|. ++.. ++.++ ++.+++|+..
T Consensus       249 ~~~~SpDG~~la~~-~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~  325 (1045)
T 1k32_A          249 PRHLNTDGRRILFS-KGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVS  325 (1045)
T ss_dssp             EEEEEESSSCEEEE-ETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTT
T ss_pred             eeeEcCCCCEEEEE-eCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCC
Confidence            77999999998887 5899999998554433 3332           22346678887 6654 44444 8899999987


Q ss_pred             CCceeeEecCCCc-ceEEEEECCCCCEEEEEeCCCcEE-EEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEE
Q 008467          388 ENRPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDVTAK-IWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLIL  465 (564)
Q Consensus       388 ~~~~~~~~~~h~~-~i~~v~~~~~~~~las~s~dg~i~-iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l  465 (564)
                      .+... .+..|.. .+.+++|+ +|+.|++++.++.+. +|+..++... .+..|...+..++|+|+|.         .|
T Consensus       326 ~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~---------~l  393 (1045)
T 1k32_A          326 GTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGK---------FA  393 (1045)
T ss_dssp             SSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSS---------EE
T ss_pred             CCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCC---------EE
Confidence            76544 4667777 89999999 999999999988888 9998877654 3447778899999999986         68


Q ss_pred             EEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCC----------cEEEEeCCCCeEEEEEecCCC
Q 008467          466 ASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK----------SMHIWSLKEGKIVKTYTGNGG  535 (564)
Q Consensus       466 ~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg----------~i~iw~~~~~~~~~~~~~~~~  535 (564)
                      ++++.++.|++||+.+++....+.+|...+.+++|||||++||+++.++          .|++||+.+++..........
T Consensus       394 a~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~  473 (1045)
T 1k32_A          394 VVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSH  473 (1045)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSB
T ss_pred             EEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcc
Confidence            8999999999999999998877778999999999999999999887654          899999999884333233445


Q ss_pred             EEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467          536 IFEVCWNKEGDKIAACFANHTVCVLD  561 (564)
Q Consensus       536 i~~~~w~~~g~~la~~~~~~~v~v~~  561 (564)
                      +..++|+|||++|++++.++...+|+
T Consensus       474 ~~~~~~spdG~~l~~~s~~~~~~~~~  499 (1045)
T 1k32_A          474 DYAPAFDADSKNLYYLSYRSLDPSPD  499 (1045)
T ss_dssp             EEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred             cCCceEcCCCCEEEEEecccCCcCcc
Confidence            78899999999999998876665554

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.94  E-value=1.1e-24  Score=237.80  Aligned_cols=319  Identities=14%  Similarity=0.161  Sum_probs=225.6

Q ss_pred             eEEEEECCCCCEEEEEECCCcEEEEeCCCCCCC-CCCCCCCceEEEEEeecc---------ccccCCCCeEEEEECCCCC
Q 008467          219 VCACAWSPAGSLLASGSGDSTARIWTIADGTSN-GGAQNGPLNVLVLKHVKG---------RTNEKSKDVTTLDWNGEGT  288 (564)
Q Consensus       219 V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~-~~~~~~~~~~~~~~~~~~---------~~~~~~~~V~~l~~s~~g~  288 (564)
                      +..+.|.  |..+++++.|+ | +||+.+++.. .        .+ ..+...         ........|.+++|||| .
T Consensus        28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~--------~l-~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~   93 (706)
T 2z3z_A           28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQT--------TR-FSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-G   93 (706)
T ss_dssp             CTTCEEE--TTEEEEEETTE-E-EEEC-------C--------EE-EEHHHHHTTC-----------CCCEEEEETTT-T
T ss_pred             CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeE--------Ee-echhHhhhhccchhccccccccCceeEEECCC-C
Confidence            4457888  77778888888 7 9999876531 1        00 110000         00011256999999999 6


Q ss_pred             EEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC-----cceeEEEeecccC---
Q 008467          289 LLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT-----EEWKQQFEFHSGP---  360 (564)
Q Consensus       289 ~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~-----~~~~~~~~~~~~~---  360 (564)
                      .++.+ .++.+++|+..+.....+..+...+.+++|+|+|++|+++ .|+.|++||+.+     ++...........   
T Consensus        94 ~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~  171 (706)
T 2z3z_A           94 LVVLF-TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVY  171 (706)
T ss_dssp             EEEEE-ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEE
T ss_pred             eEEEE-ECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEc
Confidence            55555 4599999998876666666777888999999999999885 789999999998     7765544333332   


Q ss_pred             -----------eEEEEcCCCc-eEEEEe---------------------------------CCCeEEEEEcCCCceeeEe
Q 008467          361 -----------TLDVDWRNNV-SFATSS---------------------------------TDNMIYVCKIGENRPIKTF  395 (564)
Q Consensus       361 -----------~~~~~~~~~~-~~~~~~---------------------------------~d~~i~~~~~~~~~~~~~~  395 (564)
                                 +..+.|.++. .++.++                                 .+..|++|++.++......
T Consensus       172 g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~  251 (706)
T 2z3z_A          172 GQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ  251 (706)
T ss_dssp             SSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC
T ss_pred             ccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec
Confidence                       3577887654 455554                                 4467999999887755443


Q ss_pred             c--CCCcceEEEEECCCCCEEEEEeCCC-----cEEEEeCCCCeeeeecc-c-ccc---cEEEEEEcc--CCCCCCCCCC
Q 008467          396 A--GHQGEVNCVKWDPTGSLLASCSDDV-----TAKIWNMKQDKYVHDLR-E-HSK---EIYTIRWSP--TGSGTNNPNQ  461 (564)
Q Consensus       396 ~--~h~~~i~~v~~~~~~~~las~s~dg-----~i~iwd~~~~~~~~~~~-~-~~~---~i~~i~~~p--~~~~~~~~~~  461 (564)
                      .  .|...+.+++|+|||+.|++++.++     .|++||..+++....+. . +..   .+..+.|+|  ++.       
T Consensus       252 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~-------  324 (706)
T 2z3z_A          252 TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQ-------  324 (706)
T ss_dssp             CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSE-------
T ss_pred             cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCE-------
Confidence            2  5677899999999999999887775     89999999883333332 1 111   235678988  764       


Q ss_pred             cEEEEEEeCCCeEEEEeCC-CCeEEEEEeCCCCCEEE-EEEcCCCCEEEEEeC-CC----cEEEEeCCCCeEEEEEecCC
Q 008467          462 QLILASASFDSTVKLWDVE-LGKLLYSLNGHREPVYS-LAFSPTGEYLASGSL-DK----SMHIWSLKEGKIVKTYTGNG  534 (564)
Q Consensus       462 ~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~h~~~i~~-~~~spdg~~lasgs~-dg----~i~iw~~~~~~~~~~~~~~~  534 (564)
                        ++++++.||.++||.+. .+..+..+..|...+.+ ++|+|||++|+.++. ++    .|..|++.+++ +..+....
T Consensus       325 --~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~  401 (706)
T 2z3z_A          325 --FIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLTPES  401 (706)
T ss_dssp             --EEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESCCSS
T ss_pred             --EEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceeccCCC
Confidence              67888899999999876 67777888888888887 799999998866554 44    67777887776 34445566


Q ss_pred             CEEEEEEccCCCEEEEEEcC----CcEEEEEee
Q 008467          535 GIFEVCWNKEGDKIAACFAN----HTVCVLDFR  563 (564)
Q Consensus       535 ~i~~~~w~~~g~~la~~~~~----~~v~v~~~~  563 (564)
                      .+..++|+|||++|++.+.+    +.+.+||++
T Consensus       402 ~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~  434 (706)
T 2z3z_A          402 GMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIG  434 (706)
T ss_dssp             SEEEEEECTTSSEEEEEEECSSCSCEEEEEESS
T ss_pred             ceEEEEECCCCCEEEEEecCCCCCcEEEEEECC
Confidence            78999999999999877554    458899864

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=1.4e-24  Score=221.02  Aligned_cols=272  Identities=13%  Similarity=0.108  Sum_probs=211.0

Q ss_pred             CeEEEEECCCCC-EEEEEe----CCC----eEEEEEC--C-Ccee--EeecCCCCCEEEEEeCC--------------CC
Q 008467          277 DVTTLDWNGEGT-LLATGS----YDG----QARIWST--N-GDLK--CTLSKHKGPIFSLKWNK--------------KG  328 (564)
Q Consensus       277 ~V~~l~~s~~g~-~l~sg~----~dg----~i~vw~~--~-~~~~--~~~~~h~~~V~~l~~~~--------------~~  328 (564)
                      .|...+|++.|. ++++|+    .+|    .+++||.  . ++..  ..+.+|...+..+++++              .+
T Consensus        64 ~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~  143 (415)
T 2hqs_A           64 EVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFR  143 (415)
T ss_dssp             GCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred             CcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCC
Confidence            466778888774 666776    467    8999998  4 4544  45778888777777664              25


Q ss_pred             CEEEEeeCC------CcEEEEECCCcceeEEEeecccCeEEEEcCCCc-eEEEEeCCC---eEEEEEcCCCceeeEecCC
Q 008467          329 DYLLTGSCD------KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV-SFATSSTDN---MIYVCKIGENRPIKTFAGH  398 (564)
Q Consensus       329 ~~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~---~i~~~~~~~~~~~~~~~~h  398 (564)
                      ..++.++.+      ++|++||+..+ ....+..|...+..+.|.++. .++.++.++   .|++|++.+++.. .+.+|
T Consensus       144 ~~l~~~s~~~~~~~~~~i~i~d~~g~-~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~  221 (415)
T 2hqs_A          144 TRIAYVVQTNGGQFPYELRVSDYDGY-NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASF  221 (415)
T ss_dssp             CEEEEEEECSSSSCCEEEEEEETTSC-SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECC
T ss_pred             CEEEEEEecCCCCccceEEEEcCCCC-CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecC
Confidence            677766654      79999999754 456677788889999998654 567777664   9999999887764 56778


Q ss_pred             CcceEEEEECCCCCEEE-EEeCCCc--EEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeC-CC--
Q 008467          399 QGEVNCVKWDPTGSLLA-SCSDDVT--AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF-DS--  472 (564)
Q Consensus       399 ~~~i~~v~~~~~~~~la-s~s~dg~--i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~-dg--  472 (564)
                      .+.+.+++|+|||+.|+ +++.|+.  |++||+.+++. ..+..|...+.+++|+|++.         .|++++. ++  
T Consensus       222 ~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~---------~l~~~s~~~g~~  291 (415)
T 2hqs_A          222 PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQ---------NLAFTSDQAGRP  291 (415)
T ss_dssp             SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSS---------EEEEEECTTSSC
T ss_pred             CCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCC---------EEEEEECCCCCc
Confidence            88999999999999877 6776665  99999988765 56778888999999999985         4555554 45  


Q ss_pred             eEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEE
Q 008467          473 TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD---KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIA  549 (564)
Q Consensus       473 ~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~d---g~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la  549 (564)
                      .|.+||+.+++. ..+..+...+.+++|||||++|++++.+   +.|++||+.++++.. +.....+..++|+|+|++|+
T Consensus       292 ~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l~~~~~~~~~~~spdg~~l~  369 (415)
T 2hqs_A          292 QVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LSSTFLDETPSLAPNGTMVI  369 (415)
T ss_dssp             EEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-CCCSSSCEEEEECTTSSEEE
T ss_pred             EEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE-ecCCCCcCCeEEcCCCCEEE
Confidence            678889987764 4455677789999999999999988764   589999999988743 44445789999999999999


Q ss_pred             EEEcCC---cEEEEEe
Q 008467          550 ACFANH---TVCVLDF  562 (564)
Q Consensus       550 ~~~~~~---~v~v~~~  562 (564)
                      +++.++   .|.+||+
T Consensus       370 ~~s~~~~~~~l~~~d~  385 (415)
T 2hqs_A          370 YSSSQGMGSVLNLVST  385 (415)
T ss_dssp             EEEEETTEEEEEEEET
T ss_pred             EEEcCCCccEEEEEEC
Confidence            887766   6788875

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.93  E-value=4.3e-25  Score=241.78  Aligned_cols=313  Identities=11%  Similarity=0.093  Sum_probs=217.3

Q ss_pred             eEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC--
Q 008467          219 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD--  296 (564)
Q Consensus       219 V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d--  296 (564)
                      +.+++|+|+|+++++ +.||+|++||+.+++..          ..   ...+ ......|.+++|||||++|++++.+  
T Consensus        19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~----------~~---~~~~-~~~~~~v~~~~~SpDg~~l~~~~~~~~   83 (723)
T 1xfd_A           19 DPEAKWISDTEFIYR-EQKGTVRLWNVETNTST----------VL---IEGK-KIESLRAIRYEISPDREYALFSYNVEP   83 (723)
T ss_dssp             CCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCE----------EE---ECTT-TTTTTTCSEEEECTTSSEEEEEESCCC
T ss_pred             ccccEEcCCCcEEEE-eCCCCEEEEECCCCcEE----------EE---eccc-cccccccceEEECCCCCEEEEEecCcc
Confidence            567899999998877 78999999999776421          01   1111 0111248999999999999999875  


Q ss_pred             -------CeEEEEECCCceeEeec---CCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCe-----
Q 008467          297 -------GQARIWSTNGDLKCTLS---KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT-----  361 (564)
Q Consensus       297 -------g~i~vw~~~~~~~~~~~---~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~-----  361 (564)
                             +.+++|+..+.....+.   .|...+..++|+|+|++|+.++. +.|++||+.+++..+....+...+     
T Consensus        84 ~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~  162 (723)
T 1xfd_A           84 IYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGL  162 (723)
T ss_dssp             CSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEE
T ss_pred             ceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcc
Confidence                   78889998755433343   34455889999999999998876 799999999888766554433322     


Q ss_pred             -------------EEEEcCCCc-eEEEEeCC----------------------------------CeEEEEEcCCCceee
Q 008467          362 -------------LDVDWRNNV-SFATSSTD----------------------------------NMIYVCKIGENRPIK  393 (564)
Q Consensus       362 -------------~~~~~~~~~-~~~~~~~d----------------------------------~~i~~~~~~~~~~~~  393 (564)
                                   ..+.|.++. .++.++.+                                  ..|++|++..+....
T Consensus       163 ~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~  242 (723)
T 1xfd_A          163 SDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDL  242 (723)
T ss_dssp             CCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCE
T ss_pred             cceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeE
Confidence                         568887664 45554432                                  278999998877555


Q ss_pred             EecCC------CcceEEEEECCCCCEEEEEeC----CCcEEEEeCCCCeeeeecccc-cccE----EEEEEccCCCCCCC
Q 008467          394 TFAGH------QGEVNCVKWDPTGSLLASCSD----DVTAKIWNMKQDKYVHDLREH-SKEI----YTIRWSPTGSGTNN  458 (564)
Q Consensus       394 ~~~~h------~~~i~~v~~~~~~~~las~s~----dg~i~iwd~~~~~~~~~~~~~-~~~i----~~i~~~p~~~~~~~  458 (564)
                      .+..+      ...+.+++|+|||++|++.+.    +..|++||+.+++....+..+ ...+    ..+.|+|+|..   
T Consensus       243 ~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~---  319 (723)
T 1xfd_A          243 EMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRK---  319 (723)
T ss_dssp             ECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCS---
T ss_pred             EeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCe---
Confidence            56554      677999999999999877653    357999999988776554432 3333    37899998852   


Q ss_pred             CCCcEEEEEEeCCC------eEEEEe-CCCCe--EEEEEeCCCCCEEE-EEEcCCCCEEEEEeCC---CcEEEEeCCCCe
Q 008467          459 PNQQLILASASFDS------TVKLWD-VELGK--LLYSLNGHREPVYS-LAFSPTGEYLASGSLD---KSMHIWSLKEGK  525 (564)
Q Consensus       459 ~~~~~~l~s~s~dg------~i~iwd-~~~~~--~~~~~~~h~~~i~~-~~~spdg~~lasgs~d---g~i~iw~~~~~~  525 (564)
                          ++++++..++      .|.+|| ...+.  +...+..+...+.. ++|||||++|+..+.+   +.+++|++....
T Consensus       320 ----l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~  395 (723)
T 1xfd_A          320 ----FFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVG  395 (723)
T ss_dssp             ----EEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSST
T ss_pred             ----EEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCC
Confidence                2333366777      577777 34443  14445544444554 6999999999866554   789999986421


Q ss_pred             --EEEEEec----CCCEEEEEEccCCCEEEEEEcC
Q 008467          526 --IVKTYTG----NGGIFEVCWNKEGDKIAACFAN  554 (564)
Q Consensus       526 --~~~~~~~----~~~i~~~~w~~~g~~la~~~~~  554 (564)
                        ....+..    ...+..++|+|||++|++.+.+
T Consensus       396 ~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~  430 (723)
T 1xfd_A          396 NFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEG  430 (723)
T ss_dssp             TCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCS
T ss_pred             CCCcceecccccCCCCeEEEEECCCCCEEEEEccC
Confidence              2233332    3457899999999999876543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.93  E-value=1.1e-23  Score=221.23  Aligned_cols=286  Identities=14%  Similarity=0.133  Sum_probs=219.4

Q ss_pred             eEEEEECCCCCEEEEEECCCcEEEEeC--CCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC----CCCEEEE
Q 008467          219 VCACAWSPAGSLLASGSGDSTARIWTI--ADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG----EGTLLAT  292 (564)
Q Consensus       219 V~~~~~sp~~~~lasgs~D~~i~iW~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~----~g~~l~s  292 (564)
                      +.+++|+|+|++|++++.|++|++||+  .+++.             +....     ....+..++|+|    +|+++++
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~-------------~~~i~-----~g~~p~~va~sp~~~~dg~~l~v  242 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK-------------VAEIK-----IGIEARSVESSKFKGYEDRYTIA  242 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE-------------EEEEE-----CCSEEEEEEECCSTTCTTTEEEE
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCCCcE-------------EEEEe-----cCCCcceEEeCCCcCCCCCEEEE
Confidence            889999999999999999999999998  44321             11111     134578999999    9999999


Q ss_pred             EeC-CCeEEEEECC-CceeEeecC----------CCC-CEEEEEeCCCCCE-EEEeeCCCcEEEEECCCcceeE--EEee
Q 008467          293 GSY-DGQARIWSTN-GDLKCTLSK----------HKG-PIFSLKWNKKGDY-LLTGSCDKTAIVWDVKTEEWKQ--QFEF  356 (564)
Q Consensus       293 g~~-dg~i~vw~~~-~~~~~~~~~----------h~~-~V~~l~~~~~~~~-l~s~s~D~~v~iwd~~~~~~~~--~~~~  356 (564)
                      +++ ++.|.+||.. ++....+..          |.. .+.++.++|++.. +++...+++|.+||..+.+...  .+. 
T Consensus       243 ~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-  321 (543)
T 1nir_A          243 GAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-  321 (543)
T ss_dssp             EEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-
T ss_pred             EEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-
Confidence            885 8999999975 344444443          233 6899999998765 5677788999999998765443  222 


Q ss_pred             cccCeEEEEcCCCce--EEEEeCCCeEEEEEcCCCceeeEecC----CCcceEEEEECCC-CCEEEEEe-CCCcEEEEeC
Q 008467          357 HSGPTLDVDWRNNVS--FATSSTDNMIYVCKIGENRPIKTFAG----HQGEVNCVKWDPT-GSLLASCS-DDVTAKIWNM  428 (564)
Q Consensus       357 ~~~~~~~~~~~~~~~--~~~~~~d~~i~~~~~~~~~~~~~~~~----h~~~i~~v~~~~~-~~~las~s-~dg~i~iwd~  428 (564)
                      +.....++.|.++..  ++++..++.|.+||..+++.+..+..    |.+....+ ++|+ +.+++|++ .|++|.+||+
T Consensus       322 ~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~  400 (543)
T 1nir_A          322 AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGT  400 (543)
T ss_dssp             CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEEC
T ss_pred             cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEe
Confidence            333455667765543  45566789999999999988877764    65444333 4677 67777776 6899999999


Q ss_pred             CC-------CeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEe-------CCCeEEEEeCCCCeEE-EEE-----
Q 008467          429 KQ-------DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASAS-------FDSTVKLWDVELGKLL-YSL-----  488 (564)
Q Consensus       429 ~~-------~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s-------~dg~i~iwd~~~~~~~-~~~-----  488 (564)
                      .+       .+++.++..|...+..++++|++.         .|.+++       .+++|.+||+.+++.. ..+     
T Consensus       401 ~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~---------~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~  471 (543)
T 1nir_A          401 DPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSS---------HLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEW  471 (543)
T ss_dssp             CTTTCTTTBTSEEEEEECSCSCCCCEECCTTCC---------EEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHH
T ss_pred             CCCCCchhcCeEEEEEEcCCCCceEEEcCCCCC---------cEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhh
Confidence            88       888999999988888999999986         567665       2679999999988876 333     


Q ss_pred             ---eCCCCCEEEEEEcCCCCEEEEEe-----CCCcEEEEeCCCCeEEEEEecC
Q 008467          489 ---NGHREPVYSLAFSPTGEYLASGS-----LDKSMHIWSLKEGKIVKTYTGN  533 (564)
Q Consensus       489 ---~~h~~~i~~~~~spdg~~lasgs-----~dg~i~iw~~~~~~~~~~~~~~  533 (564)
                         ..+...+..+.|+|+|++|..+.     .|+.|.|||.+++++++++...
T Consensus       472 ~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~  524 (543)
T 1nir_A          472 ADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP  524 (543)
T ss_dssp             HCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred             cccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecCC
Confidence               34567899999999999988652     4799999999999999988753

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.93  E-value=1.2e-22  Score=201.96  Aligned_cols=268  Identities=12%  Similarity=0.138  Sum_probs=211.2

Q ss_pred             CCeEEEEECCCCCEEEEEeC-------CCeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEE-EeeCCCcEEEEECC
Q 008467          276 KDVTTLDWNGEGTLLATGSY-------DGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVK  346 (564)
Q Consensus       276 ~~V~~l~~s~~g~~l~sg~~-------dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~  346 (564)
                      ..+..++|+|+|+++++++.       ++.|.+||... .....+.. ...+.++.|+|+|++++ +...++.|.+||+.
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~  119 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAK  119 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence            45789999999998888874       56899999764 44444443 34467899999999655 45557999999999


Q ss_pred             CcceeEEEeecccC---------eEEEEcCCC--ceEEEE-eCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEE
Q 008467          347 TEEWKQQFEFHSGP---------TLDVDWRNN--VSFATS-STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL  414 (564)
Q Consensus       347 ~~~~~~~~~~~~~~---------~~~~~~~~~--~~~~~~-~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l  414 (564)
                      +++....+..+...         ...+.|.++  ..+++. +.++.|++|+..+.+.+..+..+...+.+++|+|+++.+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l  199 (353)
T 3vgz_A          120 TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRL  199 (353)
T ss_dssp             TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEE
T ss_pred             CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEE
Confidence            99988877664322         455666543  344444 358899999999988888887666678899999999999


Q ss_pred             EEEeCCCcEEEEeCCCCeeeeeccc----ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeC
Q 008467          415 ASCSDDVTAKIWNMKQDKYVHDLRE----HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG  490 (564)
Q Consensus       415 as~s~dg~i~iwd~~~~~~~~~~~~----~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  490 (564)
                      ++++.++.|.+||..+++.+..+..    +...+..++|+|++.        .++++...++.|.+||+.+++.+..+..
T Consensus       200 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~--------~l~~~~~~~~~v~~~d~~~~~~~~~~~~  271 (353)
T 3vgz_A          200 YTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQ--------RAFITDSKAAEVLVVDTRNGNILAKVAA  271 (353)
T ss_dssp             EEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTT--------EEEEEESSSSEEEEEETTTCCEEEEEEC
T ss_pred             EEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCC--------EEEEEeCCCCEEEEEECCCCcEEEEEEc
Confidence            9999999999999999988776654    455678899999875        3455555669999999999998887765


Q ss_pred             CCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcC
Q 008467          491 HREPVYSLAFSPTGEYLASGS-LDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN  554 (564)
Q Consensus       491 h~~~i~~~~~spdg~~lasgs-~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~  554 (564)
                      .. + ..++|+|+|+++++++ .++.|.+||..+++.+..+.....+..++|+|+|++|.++..+
T Consensus       272 ~~-~-~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          272 PE-S-LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             SS-C-CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred             CC-C-ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence            43 2 5799999999765555 6899999999999999988877788999999999988777655

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.93  E-value=4.9e-24  Score=234.09  Aligned_cols=277  Identities=13%  Similarity=0.107  Sum_probs=208.7

Q ss_pred             CCCeEEEEECCCCCEEEEEeC-CC-----eEEEEECCCc-eeEeecCCCC------------------------CEEEEE
Q 008467          275 SKDVTTLDWNGEGTLLATGSY-DG-----QARIWSTNGD-LKCTLSKHKG------------------------PIFSLK  323 (564)
Q Consensus       275 ~~~V~~l~~s~~g~~l~sg~~-dg-----~i~vw~~~~~-~~~~~~~h~~------------------------~V~~l~  323 (564)
                      ...|.+++|||||++|++++. ||     .|++|+..+. ....+..+..                        .|.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            356999999999999999998 88     8999998654 4444443332                        378899


Q ss_pred             eCCCCCEEEEeeCCCcEEEEECCCcc--eeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcc
Q 008467          324 WNKKGDYLLTGSCDKTAIVWDVKTEE--WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGE  401 (564)
Q Consensus       324 ~~~~~~~l~s~s~D~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~  401 (564)
                      |+|+|++|++++. ++|++||+.++.  ....+..+...+..+.|.++...+....++.|++|++..+........+...
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~~~~~  194 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADGSTT  194 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCCCCCSS
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEeccCCccc
Confidence            9999999999886 999999998872  2334555667788899987766544445679999999887766554444332


Q ss_pred             ----------------eEEEEECCCCCEEEEEeCCC---------------------------------cEEEEeCCC-C
Q 008467          402 ----------------VNCVKWDPTGSLLASCSDDV---------------------------------TAKIWNMKQ-D  431 (564)
Q Consensus       402 ----------------i~~v~~~~~~~~las~s~dg---------------------------------~i~iwd~~~-~  431 (564)
                                      +.+++|+|||+.|++++.|+                                 .|.+||+.+ +
T Consensus       195 ~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~  274 (741)
T 2ecf_A          195 IGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQA  274 (741)
T ss_dssp             EEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTC
T ss_pred             eeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCC
Confidence                            47899999999999988765                                 788999988 7


Q ss_pred             eeeeecc--cccccEEEEEEccCCCCCCCCCCcEEEEEEe-----CCCeEEEEeCCCCeEEEEEeCCCC----CEEEEEE
Q 008467          432 KYVHDLR--EHSKEIYTIRWSPTGSGTNNPNQQLILASAS-----FDSTVKLWDVELGKLLYSLNGHRE----PVYSLAF  500 (564)
Q Consensus       432 ~~~~~~~--~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s-----~dg~i~iwd~~~~~~~~~~~~h~~----~i~~~~~  500 (564)
                      +......  .|...+..++| |+|.         .|+.++     .+..|++||+.++++...+..+..    .+.+++|
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~-pDg~---------~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~  344 (741)
T 2ecf_A          275 QTQWIDLGKEQDIYLARVNW-RDPQ---------HLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRF  344 (741)
T ss_dssp             CCEEECCCSCSSEEEEEEEE-EETT---------EEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEE
T ss_pred             ceEEecCCCCcceEEEEEEe-CCCC---------EEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEE
Confidence            6544332  47778999999 9986         344443     357899999999988766655443    4568999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCC-CCeEEEEEec-CCCEEEE-EEccCCCEEEEEEc-CC--cEEEEEee
Q 008467          501 SPTGEYLASGSLDKSMHIWSLK-EGKIVKTYTG-NGGIFEV-CWNKEGDKIAACFA-NH--TVCVLDFR  563 (564)
Q Consensus       501 spdg~~lasgs~dg~i~iw~~~-~~~~~~~~~~-~~~i~~~-~w~~~g~~la~~~~-~~--~v~v~~~~  563 (564)
                      +|||+++++++.||.++||.+. +++ ...+.. ...+..+ +|+|+|+.|+++.. ++  .+.||++.
T Consensus       345 spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~  412 (741)
T 2ecf_A          345 LDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVP  412 (741)
T ss_dssp             CTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred             CCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence            9999999999999988888765 445 555543 4457777 59999998876554 44  78898874

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.93  E-value=8.2e-23  Score=201.39  Aligned_cols=270  Identities=11%  Similarity=0.108  Sum_probs=198.5

Q ss_pred             ECCCC-CEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeC-CCcEEEEECCCcce-eEEEeecc
Q 008467          283 WNGEG-TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEW-KQQFEFHS  358 (564)
Q Consensus       283 ~s~~g-~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-D~~v~iwd~~~~~~-~~~~~~~~  358 (564)
                      |.+++ ..+++++.++.|++||.. ++....+..+..++ +++|+|+|+++++++. ++.|.+||+.+++. ...+..+.
T Consensus         5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~   83 (331)
T 3u4y_A            5 FQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQ   83 (331)
T ss_dssp             --CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECS
T ss_pred             EcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCC
Confidence            44544 457788889999999976 55555666666667 9999999997776665 89999999999987 66666666


Q ss_pred             cCeEEEEcCCCce-EEEEeCC-C--eEEEEEcCCCceeeEecCCCcceEEEEECCCCCE-EEEEeCCCc-EEEEeCCCCe
Q 008467          359 GPTLDVDWRNNVS-FATSSTD-N--MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSL-LASCSDDVT-AKIWNMKQDK  432 (564)
Q Consensus       359 ~~~~~~~~~~~~~-~~~~~~d-~--~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~-las~s~dg~-i~iwd~~~~~  432 (564)
                      .+...+.|.++.. ++++..+ +  .|++|+...++.+..+..+ ....+++|+|+|++ ++++..++. |.+|++....
T Consensus        84 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g  162 (331)
T 3u4y_A           84 SSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADG  162 (331)
T ss_dssp             SCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTC
T ss_pred             CCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCC
Confidence            5555477765543 4443333 2  8999999988887777654 34689999999985 455566688 9999987644


Q ss_pred             eee----ecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE---EEEEeCCCCCEEEEEEcCCCC
Q 008467          433 YVH----DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL---LYSLNGHREPVYSLAFSPTGE  505 (564)
Q Consensus       433 ~~~----~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~h~~~i~~~~~spdg~  505 (564)
                      .+.    ...........++|+|++.        .+++++..++.|++||+.+++.   +..+..+ ..+..++|+|||+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~spdg~--------~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~  233 (331)
T 3u4y_A          163 VLFDTGQEFISGGTRPFNITFTPDGN--------FAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGS  233 (331)
T ss_dssp             CEEEEEEEEECSSSSEEEEEECTTSS--------EEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSS
T ss_pred             cEeecCCccccCCCCccceEECCCCC--------EEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCC
Confidence            331    1123345578999999875        3566667799999999998887   7777654 5668999999999


Q ss_pred             EEEEEe-CCCcEEEEeCCCCeE--EEEEecC--------CCEEEEEEccCCCEEEEEEc-CCcEEEEEee
Q 008467          506 YLASGS-LDKSMHIWSLKEGKI--VKTYTGN--------GGIFEVCWNKEGDKIAACFA-NHTVCVLDFR  563 (564)
Q Consensus       506 ~lasgs-~dg~i~iw~~~~~~~--~~~~~~~--------~~i~~~~w~~~g~~la~~~~-~~~v~v~~~~  563 (564)
                      +|++++ .++.|.+||+.++++  +..+...        .....++|+|||++|+++.. ++.|.|||+.
T Consensus       234 ~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~  303 (331)
T 3u4y_A          234 TVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTIS  303 (331)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             EEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEec
Confidence            876654 578899999999987  4444322        12345899999998876655 5689999974

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.92  E-value=9.2e-24  Score=203.89  Aligned_cols=253  Identities=16%  Similarity=0.203  Sum_probs=191.6

Q ss_pred             EEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCC-cceeEEEeecc-cCeEEEEcCCC
Q 008467          292 TGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT-EEWKQQFEFHS-GPTLDVDWRNN  369 (564)
Q Consensus       292 sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~~-~~~~~~~~~~~  369 (564)
                      +++.++.|++|+..+.....+..|...|.+++|+|+|++|++++ ++.|++||+.+ ++.......+. ..+.++.|.++
T Consensus        17 ~~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd   95 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPD   95 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTT
T ss_pred             CCCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCC
Confidence            34678999999988766667777999999999999999999876 88999999998 87766554442 45667788655


Q ss_pred             c-eEEEEe--C--CCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEE-EEeCCCcEEEEeCCC-Ceeeeecccccc
Q 008467          370 V-SFATSS--T--DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVTAKIWNMKQ-DKYVHDLREHSK  442 (564)
Q Consensus       370 ~-~~~~~~--~--d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~la-s~s~dg~i~iwd~~~-~~~~~~~~~~~~  442 (564)
                      . .++.++  .  ...|+.++..... ...+..+. .+.+++|+|+++.|+ +++.|+.++||++.. ......+..+..
T Consensus        96 g~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  173 (297)
T 2ojh_A           96 GALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEG  173 (297)
T ss_dssp             SSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSS
T ss_pred             CCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCC
Confidence            4 455555  2  3456666665544 33444333 488999999999877 788899999998632 233456677888


Q ss_pred             cEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC-CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC--------
Q 008467          443 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE-LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD--------  513 (564)
Q Consensus       443 ~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~d--------  513 (564)
                      .+.++.|+|++.        .+++++..++.++||++. .+..+..+..|...+.+++|+|+|++|++++.+        
T Consensus       174 ~~~~~~~s~dg~--------~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~  245 (297)
T 2ojh_A          174 RNDGPDYSPDGR--------WIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPR  245 (297)
T ss_dssp             CEEEEEECTTSS--------EEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCS
T ss_pred             ccccceECCCCC--------EEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccc
Confidence            899999999875        344445569999999986 455667777788889999999999999988766        


Q ss_pred             ---CcEEEEeCCCCeEEEEE---ecCCCEEEEEEccCCCEEEEEEcCC
Q 008467          514 ---KSMHIWSLKEGKIVKTY---TGNGGIFEVCWNKEGDKIAACFANH  555 (564)
Q Consensus       514 ---g~i~iw~~~~~~~~~~~---~~~~~i~~~~w~~~g~~la~~~~~~  555 (564)
                         +.|++||+.+++.....   .....+..++|+|+|++|++++.+.
T Consensus       246 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          246 DLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             SEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             cCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence               56999999988754333   2345688999999999999887653

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.92  E-value=1.5e-22  Score=200.07  Aligned_cols=292  Identities=12%  Similarity=0.181  Sum_probs=196.4

Q ss_pred             EEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC-CeEEEEECC---
Q 008467          230 LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD-GQARIWSTN---  305 (564)
Q Consensus       230 ~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d-g~i~vw~~~---  305 (564)
                      ++++++.|+.|++|++.....        ..  .....     .+...+.+++|+|+|++|++++.+ +.|++|+.+   
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~--------~~--~~~~~-----~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~   71 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGA--------LT--LTQVV-----DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD   71 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSC--------EE--EEEEE-----ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             EEEeCCCCCeEEEEEECCCCc--------EE--EeeeE-----ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCC
Confidence            455557899999999853110        01  11111     123467889999999999998887 999999975   


Q ss_pred             Ccee--EeecCCCCCEEEEEeCCCCCEEEEeeC-CCcEEEEECC---CcceeEEEeecccCeEEEEcCCCc-eE-EEEeC
Q 008467          306 GDLK--CTLSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVK---TEEWKQQFEFHSGPTLDVDWRNNV-SF-ATSST  377 (564)
Q Consensus       306 ~~~~--~~~~~h~~~V~~l~~~~~~~~l~s~s~-D~~v~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~  377 (564)
                      +...  ..+..+. .+..++|+|++++|++++. ++.|.+||+.   +......+..+ ..+..+.|.++. .+ +++..
T Consensus        72 ~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~  149 (343)
T 1ri6_A           72 GALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALK  149 (343)
T ss_dssp             CCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGG
T ss_pred             CceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCC
Confidence            3322  2344333 7789999999998876655 8899999994   33333333322 235566676553 34 44448


Q ss_pred             CCeEEEEEcCC-Cceee----EecC-CCcceEEEEECCCCCEEEE-EeCCCcEEEEeCCC--Cee--eeecc---cc---
Q 008467          378 DNMIYVCKIGE-NRPIK----TFAG-HQGEVNCVKWDPTGSLLAS-CSDDVTAKIWNMKQ--DKY--VHDLR---EH---  440 (564)
Q Consensus       378 d~~i~~~~~~~-~~~~~----~~~~-h~~~i~~v~~~~~~~~las-~s~dg~i~iwd~~~--~~~--~~~~~---~~---  440 (564)
                      ++.|++|++.. ++...    .+.. ....+.+++|+|++++++. +..++.|++|++..  +..  ...+.   ..   
T Consensus       150 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~  229 (343)
T 1ri6_A          150 QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSD  229 (343)
T ss_dssp             GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCS
T ss_pred             CCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccc
Confidence            99999999987 43321    2233 2346889999999997654 45799999999953  322  22221   11   


Q ss_pred             cccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC--C--CeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCCc
Q 008467          441 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE--L--GKLLYSLNGHREPVYSLAFSPTGEYLASGS-LDKS  515 (564)
Q Consensus       441 ~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~--~--~~~~~~~~~h~~~i~~~~~spdg~~lasgs-~dg~  515 (564)
                      ...+..++|+|++.        .+++++..++.|++||+.  .  .+.+..+..+.. +.+++|+|+|++|++++ .++.
T Consensus       230 ~~~~~~i~~s~dg~--------~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~  300 (343)
T 1ri6_A          230 TRWAADIHITPDGR--------HLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHH  300 (343)
T ss_dssp             CCCEEEEEECTTSS--------EEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCE
T ss_pred             cCCccceEECCCCC--------EEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCe
Confidence            23566899999875        355567789999999998  3  344555655544 88999999999988887 6899


Q ss_pred             EEEE--eCCCCeE--EEEEecCCCEEEEEEccCCCE
Q 008467          516 MHIW--SLKEGKI--VKTYTGNGGIFEVCWNKEGDK  547 (564)
Q Consensus       516 i~iw--~~~~~~~--~~~~~~~~~i~~~~w~~~g~~  547 (564)
                      |.+|  |..+|++  +..+........++|.++-+.
T Consensus       301 v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~~~~~~~  336 (343)
T 1ri6_A          301 ISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAHEGG  336 (343)
T ss_dssp             EEEEEEETTTTEEEEEEEEECSSSCCEEEEEEEC--
T ss_pred             EEEEEEcCCCceeeEccccccCCCCeeEEEEcccCC
Confidence            9999  5556653  445555456778888886543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.92  E-value=2.5e-22  Score=197.98  Aligned_cols=276  Identities=8%  Similarity=0.050  Sum_probs=196.2

Q ss_pred             EECCCCC-EEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeC-CCeEE
Q 008467          223 AWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY-DGQAR  300 (564)
Q Consensus       223 ~~sp~~~-~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~-dg~i~  300 (564)
                      .|.+++. .+++++.++.|++||+.+++..             ....    .....+ .++|+|+|+++++++. ++.|+
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~-------------~~~~----~~~~~~-~~~~s~dg~~l~~~~~~~~~i~   65 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEIL-------------NQIT----LGYDFV-DTAITSDCSNVVVTSDFCQTLV   65 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEE-------------EEEE----CCCCEE-EEEECSSSCEEEEEESTTCEEE
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCccccee-------------eeEE----ccCCcc-eEEEcCCCCEEEEEeCCCCeEE
Confidence            4666654 5778889999999998776421             1111    113445 8999999997766665 89999


Q ss_pred             EEECCC-ce-eEeecCCCCCEEEEEeCCCCCEEEEeeCCC---cEEEEECCCcceeEEEeecccCeEEEEcCCCc--eEE
Q 008467          301 IWSTNG-DL-KCTLSKHKGPIFSLKWNKKGDYLLTGSCDK---TAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV--SFA  373 (564)
Q Consensus       301 vw~~~~-~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  373 (564)
                      +|+... .. ...+..+..+..+++|+|+|++++++..++   .|.+||+.+++.+..+.... ....+.|.++.  .++
T Consensus        66 ~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~  144 (331)
T 3u4y_A           66 QIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DAVGIAISPNGNGLIL  144 (331)
T ss_dssp             EEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TEEEEEECTTSSCEEE
T ss_pred             EEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC-CccceEECCCCCEEEE
Confidence            999854 44 556666777776699999999999665553   89999999998877766543 34677776653  556


Q ss_pred             EEeCCCe-EEEEEcCCCceee----EecCCCcceEEEEECCCCCEE-EEEeCCCcEEEEeCCCCee---eeecccccccE
Q 008467          374 TSSTDNM-IYVCKIGENRPIK----TFAGHQGEVNCVKWDPTGSLL-ASCSDDVTAKIWNMKQDKY---VHDLREHSKEI  444 (564)
Q Consensus       374 ~~~~d~~-i~~~~~~~~~~~~----~~~~h~~~i~~v~~~~~~~~l-as~s~dg~i~iwd~~~~~~---~~~~~~~~~~i  444 (564)
                      +...++. +.+|++.....+.    ..........+++|+|+|+++ +++..++.|++||+.+++.   +..+..+ ..+
T Consensus       145 ~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~  223 (331)
T 3u4y_A          145 IDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLP  223 (331)
T ss_dssp             EEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCC
T ss_pred             EecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCC
Confidence            6667677 9999987644321    112334457899999999955 5555789999999998887   6666543 556


Q ss_pred             EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE--EEEEeCC----CC---CEEEEEEcCCCCEEEEEe-CCC
Q 008467          445 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL--LYSLNGH----RE---PVYSLAFSPTGEYLASGS-LDK  514 (564)
Q Consensus       445 ~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~h----~~---~i~~~~~spdg~~lasgs-~dg  514 (564)
                      ..++|+|++.        .++++...++.|.+||+.+++.  +..+..+    ..   .+..++|+|||++|++++ .++
T Consensus       224 ~~~~~spdg~--------~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~  295 (331)
T 3u4y_A          224 GTIVVSRDGS--------TVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISR  295 (331)
T ss_dssp             CCEEECTTSS--------EEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTT
T ss_pred             ceEEECCCCC--------EEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCC
Confidence            7899999875        3445555688999999999887  4444322    22   235689999999886655 467


Q ss_pred             cEEEEeCCCCeE
Q 008467          515 SMHIWSLKEGKI  526 (564)
Q Consensus       515 ~i~iw~~~~~~~  526 (564)
                      .|.+|++.+..+
T Consensus       296 ~v~v~d~~~~~~  307 (331)
T 3u4y_A          296 ELKVFTISGKVV  307 (331)
T ss_dssp             EEEEEETTSCEE
T ss_pred             cEEEEEecCCcc
Confidence            999999987543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.92  E-value=5.9e-23  Score=198.18  Aligned_cols=240  Identities=18%  Similarity=0.280  Sum_probs=178.3

Q ss_pred             ceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCC-CCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC
Q 008467          208 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIAD-GTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE  286 (564)
Q Consensus       208 ~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~  286 (564)
                      ....+..|...|.+++|+|+|++|++++ ++.|++|++.+ +....             ...   ......|.+++|+|+
T Consensus        33 ~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~-------------~~~---~~~~~~~~~~~~spd   95 (297)
T 2ojh_A           33 KMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEK-------------VDT---GFATICNNDHGISPD   95 (297)
T ss_dssp             EEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEE-------------CCC---TTCCCBCSCCEECTT
T ss_pred             ceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceE-------------ecc---ccccccccceEECCC
Confidence            3445667889999999999999999987 88999999876 53210             000   112356788999999


Q ss_pred             CCEEEEEeC--CCeEEEE--ECCCceeEeecCCCCCEEEEEeCCCCCEEE-EeeCCCcEEEEECCCcceeEEEeecccCe
Q 008467          287 GTLLATGSY--DGQARIW--STNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEFHSGPT  361 (564)
Q Consensus       287 g~~l~sg~~--dg~i~vw--~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~~~~  361 (564)
                      |++|++++.  ++..+||  +..+.....+..+. .+..++|+|++++|+ +++.|+.++||++....            
T Consensus        96 g~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~------------  162 (297)
T 2ojh_A           96 GALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDS------------  162 (297)
T ss_dssp             SSEEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTT------------
T ss_pred             CCEEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCC------------
Confidence            999999993  3455555  55554444454443 489999999999887 78889999999853211            


Q ss_pred             EEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEe-CCCcEEEEeCC-CCeeeeeccc
Q 008467          362 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS-DDVTAKIWNMK-QDKYVHDLRE  439 (564)
Q Consensus       362 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s-~dg~i~iwd~~-~~~~~~~~~~  439 (564)
                                                  .....+..|...+.+++|+|+++.|+.++ .++.++||++. .+..+..+..
T Consensus       163 ----------------------------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~  214 (297)
T 2ojh_A          163 ----------------------------GVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD  214 (297)
T ss_dssp             ----------------------------CCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC
T ss_pred             ----------------------------CcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec
Confidence                                        01123345667789999999999887666 59999999986 4556677778


Q ss_pred             ccccEEEEEEccCCCCCCCCCCcEEEEEEeCC-----------CeEEEEeCCCCeE--EEEEeCCCCCEEEEEEcCCCCE
Q 008467          440 HSKEIYTIRWSPTGSGTNNPNQQLILASASFD-----------STVKLWDVELGKL--LYSLNGHREPVYSLAFSPTGEY  506 (564)
Q Consensus       440 ~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d-----------g~i~iwd~~~~~~--~~~~~~h~~~i~~~~~spdg~~  506 (564)
                      |...+..+.|+|++.         +|++++.+           +.|.+||+.+++.  +..+.+|...+.+++|+|||++
T Consensus       215 ~~~~~~~~~~s~dg~---------~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~  285 (297)
T 2ojh_A          215 SAYGDWFPHPSPSGD---------KVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDE  285 (297)
T ss_dssp             CSEEEEEEEECTTSS---------EEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSE
T ss_pred             CCcccCCeEECCCCC---------EEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCE
Confidence            888899999999875         45555544           5799999988754  4555578888999999999999


Q ss_pred             EEEEeCCC
Q 008467          507 LASGSLDK  514 (564)
Q Consensus       507 lasgs~dg  514 (564)
                      |++++.+.
T Consensus       286 l~~~~~~~  293 (297)
T 2ojh_A          286 FAYVRYFP  293 (297)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEecc
Confidence            98887653

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.92  E-value=1.6e-22  Score=199.98  Aligned_cols=265  Identities=11%  Similarity=0.200  Sum_probs=188.9

Q ss_pred             EEEEEeCCCeEEEEECC--Ccee-EeecCCCCCEEEEEeCCCCCEEEEeeCC-CcEEEEECC--Cccee--EEEeecccC
Q 008467          289 LLATGSYDGQARIWSTN--GDLK-CTLSKHKGPIFSLKWNKKGDYLLTGSCD-KTAIVWDVK--TEEWK--QQFEFHSGP  360 (564)
Q Consensus       289 ~l~sg~~dg~i~vw~~~--~~~~-~~~~~h~~~V~~l~~~~~~~~l~s~s~D-~~v~iwd~~--~~~~~--~~~~~~~~~  360 (564)
                      ++++++.++.|++|+.+  +... .....|...+.+++|+|+|++|++++.+ +.|.+|++.  ++...  ..+.... .
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~   85 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-S   85 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-C
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-C
Confidence            44555789999999975  3322 2233577788999999999999988887 999999987  55543  2333333 5


Q ss_pred             eEEEEcCCCc--eEEEEeCCCeEEEEEcC---CCceeeEecCCCcceEEEEECCCCCEEEEEe-CCCcEEEEeCCC-Cee
Q 008467          361 TLDVDWRNNV--SFATSSTDNMIYVCKIG---ENRPIKTFAGHQGEVNCVKWDPTGSLLASCS-DDVTAKIWNMKQ-DKY  433 (564)
Q Consensus       361 ~~~~~~~~~~--~~~~~~~d~~i~~~~~~---~~~~~~~~~~h~~~i~~v~~~~~~~~las~s-~dg~i~iwd~~~-~~~  433 (564)
                      +..+.|.++.  .++++..++.|.+|++.   ....+..+..+ ..+.+++|+|+++++++++ .++.|++||+.+ ++.
T Consensus        86 ~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~  164 (343)
T 1ri6_A           86 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL  164 (343)
T ss_dssp             CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred             CcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence            5667776554  33455568899999994   33444454443 3588999999999888777 899999999987 543


Q ss_pred             ee----eccc-ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC--CeE--EEEEe----CC--CCCEEEE
Q 008467          434 VH----DLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL--GKL--LYSLN----GH--REPVYSL  498 (564)
Q Consensus       434 ~~----~~~~-~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~--~~~--~~~~~----~h--~~~i~~~  498 (564)
                      ..    .+.. ....+..++|+|++.        .+++++..++.|++|++..  ++.  ...+.    ++  ...+..+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~pdg~--------~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i  236 (343)
T 1ri6_A          165 VAQDPAEVTTVEGAGPRHMVFHPNEQ--------YAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADI  236 (343)
T ss_dssp             EEEEEEEEECSTTCCEEEEEECTTSS--------EEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEE
T ss_pred             eeecccccccCCCCCcceEEECCCCC--------EEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccce
Confidence            21    2222 334678899999875        3455666899999999953  432  22222    11  2356789


Q ss_pred             EEcCCCCEEE-EEeCCCcEEEEeCC--CC--eEEEEEecCCCEEEEEEccCCCEEEEEE-cCCcEEEEEee
Q 008467          499 AFSPTGEYLA-SGSLDKSMHIWSLK--EG--KIVKTYTGNGGIFEVCWNKEGDKIAACF-ANHTVCVLDFR  563 (564)
Q Consensus       499 ~~spdg~~la-sgs~dg~i~iw~~~--~~--~~~~~~~~~~~i~~~~w~~~g~~la~~~-~~~~v~v~~~~  563 (564)
                      +|+|+|++|+ ++..++.|.+|++.  ++  +.+..+.....+..++|+|+|++|+++. .++.+.||++.
T Consensus       237 ~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          237 HITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             EECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            9999999887 45579999999998  33  4555565555688999999999988887 57899999664

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.91  E-value=1.3e-23  Score=230.09  Aligned_cols=274  Identities=13%  Similarity=0.177  Sum_probs=198.4

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEECC-CceeEeecCCCC---CEEEEEeCCCCCEEEEeeCC---------CcEEEEE
Q 008467          278 VTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKG---PIFSLKWNKKGDYLLTGSCD---------KTAIVWD  344 (564)
Q Consensus       278 V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~---~V~~l~~~~~~~~l~s~s~D---------~~v~iwd  344 (564)
                      +.+++|+|||+++++ +.||.|++|+.. +.....+..|..   .|.+++|+|+|++|++++.+         +.+.+||
T Consensus        19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d   97 (723)
T 1xfd_A           19 DPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK   97 (723)
T ss_dssp             CCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred             ccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEE
Confidence            567899999998776 789999999975 445555666664   49999999999999998775         7788999


Q ss_pred             CCCcceeEEEeec---ccCeEEEEcCCCc-eEEEEeCCCeEEEEEcCCCceeeEecCCCcce------------------
Q 008467          345 VKTEEWKQQFEFH---SGPTLDVDWRNNV-SFATSSTDNMIYVCKIGENRPIKTFAGHQGEV------------------  402 (564)
Q Consensus       345 ~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i------------------  402 (564)
                      +.+++. ..+...   ...+..+.|.++. .++.++ ++.|++|++..+........+...+                  
T Consensus        98 ~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~  175 (723)
T 1xfd_A           98 IPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTH  175 (723)
T ss_dssp             SSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSS
T ss_pred             CCCCce-EeccCCccccccccccEECCCCCEEEEEE-CCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCc
Confidence            998876 233222   2235667887665 444444 4899999998877766655544333                  


Q ss_pred             EEEEECCCCCEEEEEeCCC----------------------------------cEEEEeCCCCeeeeecccc------cc
Q 008467          403 NCVKWDPTGSLLASCSDDV----------------------------------TAKIWNMKQDKYVHDLREH------SK  442 (564)
Q Consensus       403 ~~v~~~~~~~~las~s~dg----------------------------------~i~iwd~~~~~~~~~~~~~------~~  442 (564)
                      .+++|+|||+.|++++.|+                                  .|++||+.+++....+..+      ..
T Consensus       176 ~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~  255 (723)
T 1xfd_A          176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREY  255 (723)
T ss_dssp             EEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE
T ss_pred             ceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccc
Confidence            7899999999999987653                                  7999999888765555543      56


Q ss_pred             cEEEEEEccCCCCCCCCCCcEEEEEEe----CCCeEEEEeCCCCeEEEEEeC-CCCCEE----EEEEcCCCCEEEE--Ee
Q 008467          443 EIYTIRWSPTGSGTNNPNQQLILASAS----FDSTVKLWDVELGKLLYSLNG-HREPVY----SLAFSPTGEYLAS--GS  511 (564)
Q Consensus       443 ~i~~i~~~p~~~~~~~~~~~~~l~s~s----~dg~i~iwd~~~~~~~~~~~~-h~~~i~----~~~~spdg~~las--gs  511 (564)
                      .+..+.|+|+|.         +|++.+    .+..|++||+.++++...+.. +...+.    .++|||||++|+.  +.
T Consensus       256 ~~~~~~~SpDg~---------~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  326 (723)
T 1xfd_A          256 YITMVKWATSTK---------VAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAI  326 (723)
T ss_dssp             EEEEEEESSSSE---------EEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEE
T ss_pred             eeEEEEEeCCCe---------EEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEec
Confidence            789999999875         454443    236799999999887665543 333333    7899999998775  45


Q ss_pred             CCC------cEEEEe-CCCCe--EEEEEe-cCCCEEE-EEEccCCCEEEEEEcC---CcEEEEEee
Q 008467          512 LDK------SMHIWS-LKEGK--IVKTYT-GNGGIFE-VCWNKEGDKIAACFAN---HTVCVLDFR  563 (564)
Q Consensus       512 ~dg------~i~iw~-~~~~~--~~~~~~-~~~~i~~-~~w~~~g~~la~~~~~---~~v~v~~~~  563 (564)
                      .++      .|.+|+ ..++.  ....+. +...+.. ++|+|||+.|++.+.+   +.+.||++.
T Consensus       327 ~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~  392 (723)
T 1xfd_A          327 PQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSAN  392 (723)
T ss_dssp             CCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred             ccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEe
Confidence            677      577777 34444  033333 3344554 6999999999877665   678898874

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.91  E-value=1.7e-22  Score=220.61  Aligned_cols=278  Identities=10%  Similarity=0.103  Sum_probs=201.4

Q ss_pred             cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC
Q 008467          217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD  296 (564)
Q Consensus       217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d  296 (564)
                      ..|.+++|||+ +.++.+ .|+.+++||+.++..              ....    .+...+.+++|||||++|+++ .+
T Consensus        82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~--------------~~l~----~~~~~~~~~~~SpdG~~la~~-~~  140 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKV--------------TYLF----DTNEETASLDFSPVGDRVAYV-RN  140 (706)
T ss_dssp             CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEE--------------EEEE----CCTTCCTTCEECTTSSEEEEE-ET
T ss_pred             cCceeEEECCC-CeEEEE-ECCEEEEEECCCCce--------------EEcc----CCcccccCCcCCCCCCEEEEE-EC
Confidence            56899999999 655554 469999999876531              0111    113457788999999999995 68


Q ss_pred             CeEEEEECCC------ceeEeecCCCCC--------------EEEEEeCCCCCEEEEee---------------------
Q 008467          297 GQARIWSTNG------DLKCTLSKHKGP--------------IFSLKWNKKGDYLLTGS---------------------  335 (564)
Q Consensus       297 g~i~vw~~~~------~~~~~~~~h~~~--------------V~~l~~~~~~~~l~s~s---------------------  335 (564)
                      +.|++|+..+      ........+...              +.++.|+|+|++|++++                     
T Consensus       141 ~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~  220 (706)
T 2z3z_A          141 HNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAES  220 (706)
T ss_dssp             TEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEE
T ss_pred             CeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCce
Confidence            9999999864      333333333333              47899999999999987                     


Q ss_pred             ------------CCCcEEEEECCCcceeEEEe--ecccCeEEEEcCCCce-EEEEeCCC-----eEEEEEcCCCceeeEe
Q 008467          336 ------------CDKTAIVWDVKTEEWKQQFE--FHSGPTLDVDWRNNVS-FATSSTDN-----MIYVCKIGENRPIKTF  395 (564)
Q Consensus       336 ------------~D~~v~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~d~-----~i~~~~~~~~~~~~~~  395 (564)
                                  .+..|.+||+.+++......  .+...+..+.|.++.. ++.++.+.     .|++|+..++.....+
T Consensus       221 ~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~  300 (706)
T 2z3z_A          221 KPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTL  300 (706)
T ss_dssp             EEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEE
T ss_pred             EEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEE
Confidence                        44679999999887654432  2344577889976654 55555554     8999999887333333


Q ss_pred             c--CCCc---ceEEEEECC--CCCEEEEEeCCCcEEEEeCC-CCeeeeecccccccEEE-EEEccCCCCCCCCCCcEEEE
Q 008467          396 A--GHQG---EVNCVKWDP--TGSLLASCSDDVTAKIWNMK-QDKYVHDLREHSKEIYT-IRWSPTGSGTNNPNQQLILA  466 (564)
Q Consensus       396 ~--~h~~---~i~~v~~~~--~~~~las~s~dg~i~iwd~~-~~~~~~~~~~~~~~i~~-i~~~p~~~~~~~~~~~~~l~  466 (564)
                      .  .+..   .+.+++|+|  +|+++++++.|+.++||++. ++..+..+..+...+.. +.|+|++.        .+++
T Consensus       301 ~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~--------~l~~  372 (706)
T 2z3z_A          301 FVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGT--------RLYF  372 (706)
T ss_dssp             EEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSS--------EEEE
T ss_pred             EEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCC--------EEEE
Confidence            2  2222   246789999  99999999999999999876 56667778778777877 79999875        3555


Q ss_pred             EEeCCC----eEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEeCCCCe
Q 008467          467 SASFDS----TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD----KSMHIWSLKEGK  525 (564)
Q Consensus       467 s~s~dg----~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~d----g~i~iw~~~~~~  525 (564)
                      +++.++    .|..||+.+++ +..+. |...+.+++|||||++|+.+..+    +.|++||+.+++
T Consensus       373 ~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          373 ESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             EESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             EecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence            666665    67777887765 33443 66779999999999998876443    569999999887

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.91  E-value=4.2e-23  Score=220.08  Aligned_cols=260  Identities=13%  Similarity=0.093  Sum_probs=197.5

Q ss_pred             CCeEEEEECCCCCEEEEEeC-CCeEEEEECCCceeEeecCCC-CCEEEEEeCCCCCEEEEeeC---CCcEEEEECCC---
Q 008467          276 KDVTTLDWNGEGTLLATGSY-DGQARIWSTNGDLKCTLSKHK-GPIFSLKWNKKGDYLLTGSC---DKTAIVWDVKT---  347 (564)
Q Consensus       276 ~~V~~l~~s~~g~~l~sg~~-dg~i~vw~~~~~~~~~~~~h~-~~V~~l~~~~~~~~l~s~s~---D~~v~iwd~~~---  347 (564)
                      .+|.+++|+|||+.||+++. ||.++||+..+.....+..|. ..|.++.|+|+ +.+++++.   +....+|.+..   
T Consensus        22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~  100 (582)
T 3o4h_A           22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRP  100 (582)
T ss_dssp             SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTST
T ss_pred             cchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCC
Confidence            46999999999999999887 999999998776666666666 68999999999 66776665   55566765433   


Q ss_pred             cceeEEEeec-ccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCC----Cc
Q 008467          348 EEWKQQFEFH-SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD----VT  422 (564)
Q Consensus       348 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~d----g~  422 (564)
                      +... .+... ...+..+.+..+..+++++.++.+.+|++.++++......+.   .+++|+|||++||+++.+    +.
T Consensus       101 g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~  176 (582)
T 3o4h_A          101 GEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVS  176 (582)
T ss_dssp             TCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEE
T ss_pred             Cccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeE
Confidence            2222 22211 112334444555444445555555599998876655444333   789999999999988877    78


Q ss_pred             EEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCC--eEEEEeCCCCeEEEEEeCCCCCEEEEE-
Q 008467          423 AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS--TVKLWDVELGKLLYSLNGHREPVYSLA-  499 (564)
Q Consensus       423 i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~h~~~i~~~~-  499 (564)
                      |++||+.+++.. .+..|...+..++|+|+|.         .|++++.++  .|++||+.+++.. .+.+|...+..++ 
T Consensus       177 i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~---------~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~  245 (582)
T 3o4h_A          177 LFTSNLSSGGLR-VFDSGEGSFSSASISPGMK---------VTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRP  245 (582)
T ss_dssp             EEEEETTTCCCE-EECCSSCEEEEEEECTTSC---------EEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCC
T ss_pred             EEEEcCCCCCce-EeecCCCccccceECCCCC---------EEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhh
Confidence            999999887754 6678888899999999986         567888888  8999999998887 7777777677677 


Q ss_pred             -------EcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCc
Q 008467          500 -------FSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHT  556 (564)
Q Consensus       500 -------~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~  556 (564)
                             |||||.++++++.|+++++|++  |+....  ..+.+.+++|+ +|+.+++++.+..
T Consensus       246 ~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~--~~~~v~~~~~s-dg~~l~~~s~~~~  304 (582)
T 3o4h_A          246 TAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA--PQGNHGRVVLW-RGKLVTSHTSLST  304 (582)
T ss_dssp             SEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC--CSSEEEEEEEE-TTEEEEEEEETTE
T ss_pred             ccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc--CCCceEEEEec-CCEEEEEEcCCCC
Confidence                   9999999999999999999999  776552  33568899999 9999888777644

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.91  E-value=5.8e-22  Score=195.38  Aligned_cols=270  Identities=13%  Similarity=0.096  Sum_probs=196.7

Q ss_pred             CEEEEEeCCCeEEEEECCC-ceeEeecC-CCC-CEEEEEeCCCCCEE-EEeeCCCcEEEEECCCcceeEEEeecc-----
Q 008467          288 TLLATGSYDGQARIWSTNG-DLKCTLSK-HKG-PIFSLKWNKKGDYL-LTGSCDKTAIVWDVKTEEWKQQFEFHS-----  358 (564)
Q Consensus       288 ~~l~sg~~dg~i~vw~~~~-~~~~~~~~-h~~-~V~~l~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~~-----  358 (564)
                      +++++++.++.|++||... .....+.. +.. .+.+++|+|+|+++ ++++.++.|.+||+.+++....+....     
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            4789999999999999864 44444432 221 47889999999876 456667899999999998877665422     


Q ss_pred             cCeEEEEcCCCc-eEEEEe------------CCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEE
Q 008467          359 GPTLDVDWRNNV-SFATSS------------TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI  425 (564)
Q Consensus       359 ~~~~~~~~~~~~-~~~~~~------------~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~i  425 (564)
                      ..+..+.|.++. .++++.            .++.|++|+..+.+.+..+.. ...+.+++|+|++++|+++  ++.|.+
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~  158 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHV  158 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEE
Confidence            134456676544 444443            579999999988887776654 3457789999999988877  689999


Q ss_pred             EeCCCCeeeeecccccccEEEEEEccCCCCCCCC--CCcE---EEEEEeCCC----------eEEEEeCCCCeEE-EEEe
Q 008467          426 WNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNP--NQQL---ILASASFDS----------TVKLWDVELGKLL-YSLN  489 (564)
Q Consensus       426 wd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~--~~~~---~l~s~s~dg----------~i~iwd~~~~~~~-~~~~  489 (564)
                      ||+.+++.+..+..+... ..+.|+|++......  ....   ....+..++          .|.+||+.+++.. ..+.
T Consensus       159 ~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~  237 (337)
T 1pby_B          159 MDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR  237 (337)
T ss_dssp             EETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEE
T ss_pred             EECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecC
Confidence            999998877666543310 122567766421100  0000   111122222          5899999988764 3344


Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          490 GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       490 ~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      .+...+.+++|+|||++|+++  ++.|.+||+.+++.+..+.....+.+++|+|+|++|+++..++.|.|||++
T Consensus       238 ~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~  309 (337)
T 1pby_B          238 IMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAE  309 (337)
T ss_dssp             ECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETT
T ss_pred             CCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEECc
Confidence            566678999999999999988  789999999999998888777778999999999999999889999999974

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.90  E-value=2e-20  Score=185.83  Aligned_cols=270  Identities=10%  Similarity=0.056  Sum_probs=202.1

Q ss_pred             ccceEEEEECCCCCEEEEEEC-------CCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467          216 TSEVCACAWSPAGSLLASGSG-------DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  288 (564)
Q Consensus       216 ~~~V~~~~~sp~~~~lasgs~-------D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  288 (564)
                      ...+..++|+|++++|++++.       ++.|.+||..+++..             .....     ...+..++|+|+|+
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~-------------~~~~~-----~~~~~~~~~s~dg~  101 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVT-------------QAIHN-----DLKPFGATINNTTQ  101 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEE-------------EEEEE-----SSCCCSEEEETTTT
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEE-------------EEEec-----CCCcceEEECCCCC
Confidence            356788999999998888774       568999998765421             11110     12366789999999


Q ss_pred             EEE-EEeCCCeEEEEECC-CceeEeecCCCCC---------EEEEEeCCCCCEEEEee--CCCcEEEEECCCcceeEEEe
Q 008467          289 LLA-TGSYDGQARIWSTN-GDLKCTLSKHKGP---------IFSLKWNKKGDYLLTGS--CDKTAIVWDVKTEEWKQQFE  355 (564)
Q Consensus       289 ~l~-sg~~dg~i~vw~~~-~~~~~~~~~h~~~---------V~~l~~~~~~~~l~s~s--~D~~v~iwd~~~~~~~~~~~  355 (564)
                      +++ ++..++.|.+||.. +.....+..+...         +.++.|+|+|+++++++  .++.|.+||+.+++....+.
T Consensus       102 ~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~  181 (353)
T 3vgz_A          102 TLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ  181 (353)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC
T ss_pred             EEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec
Confidence            555 45557999999975 4555555544322         68899999999887766  47899999999998887776


Q ss_pred             ecccCeEEEEcCCC-ceEEEEeCCCeEEEEEcCCCceeeEecC----CCcceEEEEECCCCCEEEEEe-CCCcEEEEeCC
Q 008467          356 FHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAG----HQGEVNCVKWDPTGSLLASCS-DDVTAKIWNMK  429 (564)
Q Consensus       356 ~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~----h~~~i~~v~~~~~~~~las~s-~dg~i~iwd~~  429 (564)
                      .+...+..+.|.++ ..+++++.++.+++|+..+.+.+..+..    +...+.+++|+|+++.++.++ .++.|.+||..
T Consensus       182 ~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~  261 (353)
T 3vgz_A          182 NTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTR  261 (353)
T ss_dssp             CCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETT
T ss_pred             CCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECC
Confidence            44444556666543 4566677799999999998887776653    556788999999999766555 45999999999


Q ss_pred             CCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEE
Q 008467          430 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS  509 (564)
Q Consensus       430 ~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~las  509 (564)
                      +++.+..+.....  ..+.|+|++.        .++++...++.|.+||+.+++.+..+... ..+.+++|+|||++|++
T Consensus       262 ~~~~~~~~~~~~~--~~~~~s~dg~--------~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v  330 (353)
T 3vgz_A          262 NGNILAKVAAPES--LAVLFNPARN--------EAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYV  330 (353)
T ss_dssp             TCCEEEEEECSSC--CCEEEETTTT--------EEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEE
T ss_pred             CCcEEEEEEcCCC--ceEEECCCCC--------EEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEE
Confidence            9888776664432  5688998874        35566667999999999999988887754 46799999999998776


Q ss_pred             EeCCC
Q 008467          510 GSLDK  514 (564)
Q Consensus       510 gs~dg  514 (564)
                      +..++
T Consensus       331 ~~~~~  335 (353)
T 3vgz_A          331 SVKQK  335 (353)
T ss_dssp             EEECC
T ss_pred             EEccc
Confidence            66553

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.89  E-value=4.3e-21  Score=189.15  Aligned_cols=273  Identities=10%  Similarity=0.037  Sum_probs=198.3

Q ss_pred             CEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCC-CeEEEEECCCCCEE-EEEeCCCeEEEEECC-
Q 008467          229 SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSK-DVTTLDWNGEGTLL-ATGSYDGQARIWSTN-  305 (564)
Q Consensus       229 ~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~V~~l~~s~~g~~l-~sg~~dg~i~vw~~~-  305 (564)
                      .+|++++.++.|++||+.+++..             .....   .... .+..++|+|+|+.+ ++++.++.|.+|+.. 
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~-------------~~~~~---~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~   65 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVD-------------KVITI---ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT   65 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEE-------------EEEEC---TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             cEEEEcCCCCeEEEEECCCCcEE-------------EEEEc---CCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCC
Confidence            47899999999999998765321             11110   1111 36789999999765 555667899999975 


Q ss_pred             CceeEeecC-C----CCCEEEEEeCCCCCEEEEee------------CCCcEEEEECCCcceeEEEeecccCeEEEEcCC
Q 008467          306 GDLKCTLSK-H----KGPIFSLKWNKKGDYLLTGS------------CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN  368 (564)
Q Consensus       306 ~~~~~~~~~-h----~~~V~~l~~~~~~~~l~s~s------------~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  368 (564)
                      +.....+.. +    ...+.+++|+|+|++|++++            .++.|.+||+.+++....+.. ...+..+.|.+
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~  144 (337)
T 1pby_B           66 GETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR  144 (337)
T ss_dssp             CCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT
T ss_pred             CCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECC
Confidence            444444432 2    22567899999999998886            579999999999887776654 33445566765


Q ss_pred             Cce-EEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC-CC-----------------------cE
Q 008467          369 NVS-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DV-----------------------TA  423 (564)
Q Consensus       369 ~~~-~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~-dg-----------------------~i  423 (564)
                      +.. ++++  ++.|++|++..++.+..+..+... ..+.|+|+++.++..+. ++                       .|
T Consensus       145 dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  221 (337)
T 1pby_B          145 DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGL  221 (337)
T ss_dssp             TSSCEEEE--SSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEE
T ss_pred             CCCEEEEe--CCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccce
Confidence            543 4444  688999999988877766644311 12378999987655443 32                       46


Q ss_pred             EEEeCCCCeee-eecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcC
Q 008467          424 KIWNMKQDKYV-HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSP  502 (564)
Q Consensus       424 ~iwd~~~~~~~-~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~sp  502 (564)
                      .+||..+++.. ..+..+...+..++|+|++.         +++++  ++.|++||+.+++.+..+..+ ..+.+++|+|
T Consensus       222 ~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~---------~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~  289 (337)
T 1pby_B          222 LTMDLETGEMAMREVRIMDVFYFSTAVNPAKT---------RAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVST  289 (337)
T ss_dssp             EEEETTTCCEEEEEEEECSSCEEEEEECTTSS---------EEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECT
T ss_pred             EEEeCCCCCceEeecCCCCCceeeEEECCCCC---------EEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECC
Confidence            89999888764 23345566788999999875         45555  799999999999988777644 4578999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEEecC
Q 008467          503 TGEYLASGSLDKSMHIWSLKEGKIVKTYTGN  533 (564)
Q Consensus       503 dg~~lasgs~dg~i~iw~~~~~~~~~~~~~~  533 (564)
                      ||++|++++.++.|.+||+.+++.+..+...
T Consensus       290 dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~  320 (337)
T 1pby_B          290 DGSTVWLGGALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             TSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred             CCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence            9999999999999999999999998887643

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.89  E-value=7.8e-22  Score=201.55  Aligned_cols=245  Identities=19%  Similarity=0.190  Sum_probs=177.4

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEECCC------------ceeE----eecCCCCCEEEEEeCCCCCEEE----Eee
Q 008467          276 KDVTTLDWNGEGTLLATGSYDGQARIWSTNG------------DLKC----TLSKHKGPIFSLKWNKKGDYLL----TGS  335 (564)
Q Consensus       276 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~------------~~~~----~~~~h~~~V~~l~~~~~~~~l~----s~s  335 (564)
                      ..+..+++++++.++++|+.+| +++|+...            ....    ....|.++|.+++|+|+|++|+    +|+
T Consensus        37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs  115 (434)
T 2oit_A           37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE  115 (434)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred             CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence            3578899999999999999988 88886321            1110    1123567899999999999999    889


Q ss_pred             CCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC-CCEE
Q 008467          336 CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLL  414 (564)
Q Consensus       336 ~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~-~~~l  414 (564)
                      .|++|++||+.++....     ....                         ..-..+..+.+|...|.+++|+|+ +.+|
T Consensus       116 ~d~~v~iwd~~~~~~~~-----~~~~-------------------------~~~~~~~~~~~h~~~V~~v~~~p~~~~~l  165 (434)
T 2oit_A          116 YGSIIAFFDVRTFSNEA-----KQQK-------------------------RPFAYHKLLKDAGGMVIDMKWNPTVPSMV  165 (434)
T ss_dssp             TEEEEEEEEHHHHHCTT-----CSSC-------------------------CCSEEEECCCSGGGSEEEEEECSSCTTEE
T ss_pred             CCceEEEEEccccccCC-----cCCc-------------------------ceeeeeeccCCCCCceEEEEECCCCCCEE
Confidence            99999999986541000     0000                         000113456789999999999998 8899


Q ss_pred             EEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCC--
Q 008467          415 ASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR--  492 (564)
Q Consensus       415 as~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~--  492 (564)
                      ++|+.||+|++||++++..+.....|...|.+++|+|++.         +|++|+.||+|++||++ ++....+..|.  
T Consensus       166 as~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~---------~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~  235 (434)
T 2oit_A          166 AVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGK---------QLAVGKQNGTVVQYLPT-LQEKKVIPCPPFY  235 (434)
T ss_dssp             EEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSS---------CEEEEETTSCEEEECTT-CCEEEEECCCTTC
T ss_pred             EEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCC---------EEEEEcCCCcEEEEccC-CcccccccCCccc
Confidence            9999999999999999877766777889999999999875         68999999999999998 66666654432  


Q ss_pred             -----CCEEEEEEcCCCCEEEEE-eCCC------cEEEEeCCCCe-----EEEEEec--------CCCEEEEEEccCCCE
Q 008467          493 -----EPVYSLAFSPTGEYLASG-SLDK------SMHIWSLKEGK-----IVKTYTG--------NGGIFEVCWNKEGDK  547 (564)
Q Consensus       493 -----~~i~~~~~spdg~~lasg-s~dg------~i~iw~~~~~~-----~~~~~~~--------~~~i~~~~w~~~g~~  547 (564)
                           ..|.+++|++++.++++. +.||      .+++|++.+.+     ....+..        ....+.+.+-++.++
T Consensus       236 ~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l  315 (434)
T 2oit_A          236 ESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDL  315 (434)
T ss_dssp             CTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTE
T ss_pred             CCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCE
Confidence                 379999999999888653 3443      38999997642     1122211        112234555577787


Q ss_pred             EEEEEc-CCcEEEEE
Q 008467          548 IAACFA-NHTVCVLD  561 (564)
Q Consensus       548 la~~~~-~~~v~v~~  561 (564)
                      +.+++. ...|.|+.
T Consensus       316 ~~v~s~~s~dv~vl~  330 (434)
T 2oit_A          316 VLAASAASTEVSILA  330 (434)
T ss_dssp             EEEEETTCSBCEEEE
T ss_pred             EEEecCCCCceeEEE
Confidence            776655 44566664

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.89  E-value=1.5e-21  Score=199.44  Aligned_cols=253  Identities=15%  Similarity=0.164  Sum_probs=171.9

Q ss_pred             cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEE----E
Q 008467          217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA----T  292 (564)
Q Consensus       217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~----s  292 (564)
                      ..++.++|++++.+|++|+.|+ ++||+..................  .........+...|++++|+|+|++|+    +
T Consensus        37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s  113 (434)
T 2oit_A           37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIV--DKVQGLLVPMKFPIHHLALSCDNLTLSACMMS  113 (434)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEE--ECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred             CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCccccc--ccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence            4578899999999999999998 88887532111000000000110  000011112346799999999999999    7


Q ss_pred             EeCCCeEEEEECCCc------------eeEeecCCCCCEEEEEeCCC-CCEEEEeeCCCcEEEEECCCcceeEEEeeccc
Q 008467          293 GSYDGQARIWSTNGD------------LKCTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG  359 (564)
Q Consensus       293 g~~dg~i~vw~~~~~------------~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~  359 (564)
                      |+.|+.|+||+....            ....+.+|..+|.+++|+|+ +++|++++.||+|++||++++...        
T Consensus       114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~--------  185 (434)
T 2oit_A          114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV--------  185 (434)
T ss_dssp             TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE--------
T ss_pred             cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce--------
Confidence            889999999996421            13456779999999999998 789999999999999999875311        


Q ss_pred             CeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeeccc
Q 008467          360 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE  439 (564)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~  439 (564)
                                                       ....+|...|.+++|+|+|++|++|+.||+|++||.+ +.....+..
T Consensus       186 ---------------------------------~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~  231 (434)
T 2oit_A          186 ---------------------------------CATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPC  231 (434)
T ss_dssp             ---------------------------------EEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECC
T ss_pred             ---------------------------------eeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccC
Confidence                                             1234578889999999999999999999999999998 444444433


Q ss_pred             c-------cccEEEEEEccCCCCCCCCCCcEEEEEEeCCCe------EEEEeCCCCe----EE-EEEe-------CCCCC
Q 008467          440 H-------SKEIYTIRWSPTGSGTNNPNQQLILASASFDST------VKLWDVELGK----LL-YSLN-------GHREP  494 (564)
Q Consensus       440 ~-------~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~------i~iwd~~~~~----~~-~~~~-------~h~~~  494 (564)
                      |       ...+.++.|++++.        ++++.++.||.      +++|++++..    .. ..+.       +.+.+
T Consensus       232 ~~~~~~~~~~~v~~v~w~~~~~--------~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~  303 (434)
T 2oit_A          232 PPFYESDHPVRVLDVLWIGTYV--------FAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQH  303 (434)
T ss_dssp             CTTCCTTSCEEEEEEEEEETTE--------EEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCC
T ss_pred             CcccCCCCceeEEEEEEecCce--------EEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCc
Confidence            3       33789999998653        34444555543      8999998542    11 1111       22334


Q ss_pred             EEEEEEcCCCCEEEEEeC-CCcEEEEeCC
Q 008467          495 VYSLAFSPTGEYLASGSL-DKSMHIWSLK  522 (564)
Q Consensus       495 i~~~~~spdg~~lasgs~-dg~i~iw~~~  522 (564)
                      -..+.+-++.+++++++. .+.|.|....
T Consensus       304 ~~~~~~l~dw~l~~v~s~~s~dv~vl~~~  332 (434)
T 2oit_A          304 HYYLSYIEEWDLVLAASAASTEVSILARQ  332 (434)
T ss_dssp             CEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred             ceeeehhccCCEEEEecCCCCceeEEEec
Confidence            344444477777766554 4556666643

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.89  E-value=9.2e-22  Score=215.23  Aligned_cols=317  Identities=12%  Similarity=0.057  Sum_probs=213.0

Q ss_pred             EEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeC-----
Q 008467          221 ACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY-----  295 (564)
Q Consensus       221 ~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~-----  295 (564)
                      .++|+|+|++++++ .|+.|++|++.++...          ..+   ..+. .....|.+++|||||++|++++.     
T Consensus        20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~----------~~~---~~~~-~~~~~~~~~~~SpDg~~la~~~~~~~~~   84 (719)
T 1z68_A           20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSY----------TIL---SNRT-MKSVNASNYGLSPDRQFVYLESDYSKLW   84 (719)
T ss_dssp             CCEESSSSEEEEEC-TTSCEEEEESSSCCEE----------EEE---CHHH-HHTTTCSEEEECTTSSEEEEEEEEEECS
T ss_pred             ccEECCCCeEEEEc-CCCCEEEEEcCCCcEE----------EEE---cccc-ccccceeeEEECCCCCeEEEEecCceeE
Confidence            57899999766654 6999999999876421          011   1110 00124889999999999999876     


Q ss_pred             ----CCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEe-ecccCe---------
Q 008467          296 ----DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE-FHSGPT---------  361 (564)
Q Consensus       296 ----dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~~~---------  361 (564)
                          ++.|++|+..+............+..++|+|+|++|+.++ |+.|++||+.+++..+... .+...+         
T Consensus        85 ~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~  163 (719)
T 1z68_A           85 RYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVY  163 (719)
T ss_dssp             SSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHH
T ss_pred             EeecceEEEEEECCCCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEccccccee
Confidence                7899999987654410011235688899999999999885 7899999998887654321 111111         


Q ss_pred             --------EEEEcCCCc-eEEEEeCCC----------------------------------eEEEEEcCCCcee------
Q 008467          362 --------LDVDWRNNV-SFATSSTDN----------------------------------MIYVCKIGENRPI------  392 (564)
Q Consensus       362 --------~~~~~~~~~-~~~~~~~d~----------------------------------~i~~~~~~~~~~~------  392 (564)
                              ..+.|.++. .++.++.|.                                  .|++|++..+...      
T Consensus       164 ~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~  243 (719)
T 1z68_A          164 EEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVP  243 (719)
T ss_dssp             HHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECC
T ss_pred             eeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEcc
Confidence                    367887664 455554331                                  7889998876542      


Q ss_pred             --eEecCCCcceEEEEECCCCCEEEEEeCC----CcEEEEe----CCCCeeeeec----ccccccEE-----EEEEccCC
Q 008467          393 --KTFAGHQGEVNCVKWDPTGSLLASCSDD----VTAKIWN----MKQDKYVHDL----REHSKEIY-----TIRWSPTG  453 (564)
Q Consensus       393 --~~~~~h~~~i~~v~~~~~~~~las~s~d----g~i~iwd----~~~~~~~~~~----~~~~~~i~-----~i~~~p~~  453 (564)
                        ..+.+|...+.+++|+||++++++....    ..|.+||    ..++++...+    ..|...+.     .+.|+|+|
T Consensus       244 ~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg  323 (719)
T 1z68_A          244 VPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDA  323 (719)
T ss_dssp             CCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTS
T ss_pred             CCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCC
Confidence              2245788899999999998887775433    2488899    7777765544    35666565     78899987


Q ss_pred             CCCCCCCCcEEEEEEeCCC--eEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCC--C
Q 008467          454 SGTNNPNQQLILASASFDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD-----KSMHIWSLKE--G  524 (564)
Q Consensus       454 ~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~d-----g~i~iw~~~~--~  524 (564)
                      ..       ++++++..+|  .|.+||+..++ ...+..+...+..+.++ +|+.|+..+.+     +.+++|.+..  +
T Consensus       324 ~~-------l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g  394 (719)
T 1z68_A          324 IS-------YYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSY  394 (719)
T ss_dssp             SC-------EEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSS
T ss_pred             Ce-------EEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCC
Confidence            52       2343455565  57777877666 44566666678888888 88877766654     7888998753  4


Q ss_pred             eE-EEEEe-----cCCCEEEEEEccCCCEEEEEEcC---CcEEEEEe
Q 008467          525 KI-VKTYT-----GNGGIFEVCWNKEGDKIAACFAN---HTVCVLDF  562 (564)
Q Consensus       525 ~~-~~~~~-----~~~~i~~~~w~~~g~~la~~~~~---~~v~v~~~  562 (564)
                      .. ...+.     ....+..++|+|+|++++..+.+   ..+.+||+
T Consensus       395 ~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~  441 (719)
T 1z68_A          395 PPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDG  441 (719)
T ss_dssp             SCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECS
T ss_pred             CCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEEC
Confidence            21 23333     12357889999999988865432   24556654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.88  E-value=3.2e-20  Score=184.24  Aligned_cols=249  Identities=11%  Similarity=0.139  Sum_probs=170.8

Q ss_pred             CCeEEEEECCCCCEEEEEeC---CCeEEEEECCCce---eEeecCCCCCEEEEEeCCCCCEEEEee-CCCcEEEEECCC-
Q 008467          276 KDVTTLDWNGEGTLLATGSY---DGQARIWSTNGDL---KCTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDVKT-  347 (564)
Q Consensus       276 ~~V~~l~~s~~g~~l~sg~~---dg~i~vw~~~~~~---~~~~~~h~~~V~~l~~~~~~~~l~s~s-~D~~v~iwd~~~-  347 (564)
                      ..+..++|+|+|+ |++++.   ++.|++|+..+..   ...+..+...+..++|+|+|++|++++ .++++.+|++.. 
T Consensus        40 ~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~  118 (347)
T 3hfq_A           40 QNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAAD  118 (347)
T ss_dssp             SCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTT
T ss_pred             CCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCC
Confidence            4467799999999 554443   6899999985432   233345677788999999999988887 679999999853 


Q ss_pred             cceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEe
Q 008467          348 EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN  427 (564)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd  427 (564)
                      +........                            ......|.  ...+...+.+++|+|+|++++++..++.|++|+
T Consensus       119 g~~~~~~~~----------------------------~~~~~~p~--~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~  168 (347)
T 3hfq_A          119 GALTLTDTV----------------------------QHSGHGPR--PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYN  168 (347)
T ss_dssp             SCEEEEEEE----------------------------ECCCCCSS--TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEE
T ss_pred             CCeeeccee----------------------------ecCCCCCC--ccccCCCceEEEECCCCcEEEEeCCCCEEEEEE
Confidence            222111000                            00000010  112344688999999999777777799999999


Q ss_pred             CC-CCeee--eeccc-ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC--CeE--EEEEeCCC------C
Q 008467          428 MK-QDKYV--HDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL--GKL--LYSLNGHR------E  493 (564)
Q Consensus       428 ~~-~~~~~--~~~~~-~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~--~~~--~~~~~~h~------~  493 (564)
                      +. ++...  ..+.. .......++|+|+|.        .+++++..++.|++|++..  ++.  +..+....      .
T Consensus       169 ~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~--------~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~  240 (347)
T 3hfq_A          169 VSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQ--------YAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHN  240 (347)
T ss_dssp             ECTTSCEEEEEEEECCTTCCEEEEEECTTSS--------EEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCC
T ss_pred             ECCCCcEEEeeeEEcCCCCCCceEEECCCCC--------EEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCC
Confidence            98 44332  22222 223567899999875        3556677889999999874  553  23333222      3


Q ss_pred             CEEEEEEcCCCCEE-EEEeCCCcEEEEeCCC-C--eEEEEEec-CCCEEEEEEccCCCEEEEEEc-CCcEEEEEee
Q 008467          494 PVYSLAFSPTGEYL-ASGSLDKSMHIWSLKE-G--KIVKTYTG-NGGIFEVCWNKEGDKIAACFA-NHTVCVLDFR  563 (564)
Q Consensus       494 ~i~~~~~spdg~~l-asgs~dg~i~iw~~~~-~--~~~~~~~~-~~~i~~~~w~~~g~~la~~~~-~~~v~v~~~~  563 (564)
                      .+..++|+|||++| ++...++.|.+|++.. +  +.+..+.. ...+..++|+|||++|+++.. ++.|.||++.
T Consensus       241 ~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          241 GAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             EEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             cceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence            48899999999987 5566789999999972 3  44555554 334789999999998888865 4889999653

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.88  E-value=5.9e-21  Score=203.51  Aligned_cols=268  Identities=12%  Similarity=0.135  Sum_probs=193.7

Q ss_pred             ccceEEEEECCCCCEEEEEEC-CCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEe
Q 008467          216 TSEVCACAWSPAGSLLASGSG-DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS  294 (564)
Q Consensus       216 ~~~V~~~~~sp~~~~lasgs~-D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~  294 (564)
                      ..+|++++|+|||+.||+++. ||+++||++.++..              ....   ..+...|..++|||| +++++++
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~--------------~~lt---~~~~~~~~~~~~spd-~~l~~~~   82 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET--------------VKLN---REPINSVLDPHYGVG-RVILVRD   82 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE--------------EECC---SSCCSEECEECTTCS-EEEEEEE
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc--------------Eeee---cccccccccccCCCC-eEEEEec
Confidence            457999999999999999887 99999999754321              1111   112246889999999 8888777


Q ss_pred             C---CCeEEEE--EC--CCceeEeecCCCCCEEEEEeCCCCCE-EEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEc
Q 008467          295 Y---DGQARIW--ST--NGDLKCTLSKHKGPIFSLKWNKKGDY-LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW  366 (564)
Q Consensus       295 ~---dg~i~vw--~~--~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  366 (564)
                      .   +...++|  +.  .+... .+..+. .+...+|+|+|+. +++.+.++.+.+||+.+++.........   .++.|
T Consensus        83 ~~~g~~~~~l~~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~  157 (582)
T 3o4h_A           83 VSKGAEQHALFKVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVS  157 (582)
T ss_dssp             CSTTSCCEEEEEEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEE
T ss_pred             cCCCCcceEEEEEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEE
Confidence            5   4555665  45  55444 333222 2345678888853 3333444455599999887665444332   55666


Q ss_pred             CCC-ceEEEEeCC----CeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCC--cEEEEeCCCCeeeeeccc
Q 008467          367 RNN-VSFATSSTD----NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV--TAKIWNMKQDKYVHDLRE  439 (564)
Q Consensus       367 ~~~-~~~~~~~~d----~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg--~i~iwd~~~~~~~~~~~~  439 (564)
                      .++ ..++.++.+    ..|++|++.++.. ..+.+|.+.+..++|+|||+.|+++..++  .|++||+.+++.. .+..
T Consensus       158 spDG~~la~~~~~~~~~~~i~~~d~~~g~~-~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~  235 (582)
T 3o4h_A          158 DIRGDLIAGLGFFGGGRVSLFTSNLSSGGL-RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLEL  235 (582)
T ss_dssp             EEETTEEEEEEEEETTEEEEEEEETTTCCC-EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCC
T ss_pred             CCCCCEEEEEEEcCCCCeEEEEEcCCCCCc-eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccC
Confidence            544 445545544    6799999887664 46788889999999999999999888898  8999999988877 6677


Q ss_pred             ccccEEEEE--------EccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe
Q 008467          440 HSKEIYTIR--------WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGS  511 (564)
Q Consensus       440 ~~~~i~~i~--------~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs  511 (564)
                      |...+..+.        |+|+|.         ++++++.|+++++|++  |+.+.   .....|.+++|+ +|+++++++
T Consensus       236 ~~~~~~~~~~~~~~~~~~spdg~---------~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s  300 (582)
T 3o4h_A          236 PSKDFSSYRPTAITWLGYLPDGR---------LAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHT  300 (582)
T ss_dssp             SCSHHHHHCCSEEEEEEECTTSC---------EEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEE
T ss_pred             CCcChhhhhhccccceeEcCCCc---------EEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEc
Confidence            766666666        999873         7889999999999999  77654   234678999999 999999888


Q ss_pred             CCC---cEEEEeCCC
Q 008467          512 LDK---SMHIWSLKE  523 (564)
Q Consensus       512 ~dg---~i~iw~~~~  523 (564)
                      .+.   .|.+|+..+
T Consensus       301 ~~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          301 SLSTPPRIVSLPSGE  315 (582)
T ss_dssp             ETTEEEEEEEETTCC
T ss_pred             CCCCCCeEEEEcCCC
Confidence            774   477777654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.87  E-value=6.4e-20  Score=182.04  Aligned_cols=252  Identities=14%  Similarity=0.159  Sum_probs=172.0

Q ss_pred             CCccceEEEEECCCCCEEEEEEC---CCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEE
Q 008467          214 GHTSEVCACAWSPAGSLLASGSG---DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL  290 (564)
Q Consensus       214 ~h~~~V~~~~~sp~~~~lasgs~---D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l  290 (564)
                      .+...+..++|+|+|+ |++++.   ++.|++|++.++..           ..+....    .+...+..++|+|+|++|
T Consensus        37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~-----------~~~~~~~----~~~~~p~~~a~spdg~~l  100 (347)
T 3hfq_A           37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA-----------HKLNTVV----APGTPPAYVAVDEARQLV  100 (347)
T ss_dssp             EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE-----------EEEEEEE----EESCCCSEEEEETTTTEE
T ss_pred             eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE-----------EEeeeee----cCCCCCEEEEECCCCCEE
Confidence            3456677899999999 554443   68999999865421           0111111    123457889999999988


Q ss_pred             EEEe-CCCeEEEEECC--Ccee--EeecC---------CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECC-CcceeEEEe
Q 008467          291 ATGS-YDGQARIWSTN--GDLK--CTLSK---------HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK-TEEWKQQFE  355 (564)
Q Consensus       291 ~sg~-~dg~i~vw~~~--~~~~--~~~~~---------h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~-~~~~~~~~~  355 (564)
                      ++++ .++.+++|+..  +...  ..+..         +...+.+++|+|+|+.+++...++.|.+||+. ++.+.... 
T Consensus       101 ~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~-  179 (347)
T 3hfq_A          101 YSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQS-  179 (347)
T ss_dssp             EEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEE-
T ss_pred             EEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEee-
Confidence            8888 67999999974  2222  22211         12348899999999966666778899999987 44322110 


Q ss_pred             ecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCC-CcceEEEEECCCCCEEEE-EeCCCcEEEEeCCC--C
Q 008467          356 FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGH-QGEVNCVKWDPTGSLLAS-CSDDVTAKIWNMKQ--D  431 (564)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h-~~~i~~v~~~~~~~~las-~s~dg~i~iwd~~~--~  431 (564)
                                                            .+..+ ...+..++|+|||+++++ +..++.|.+|++..  +
T Consensus       180 --------------------------------------~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g  221 (347)
T 3hfq_A          180 --------------------------------------VLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTG  221 (347)
T ss_dssp             --------------------------------------EEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred             --------------------------------------eEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCC
Confidence                                                  01111 124567999999996554 56789999999874  4


Q ss_pred             ee--eeeccccc------ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC---CeEEEEEeCCCCCEEEEEE
Q 008467          432 KY--VHDLREHS------KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL---GKLLYSLNGHREPVYSLAF  500 (564)
Q Consensus       432 ~~--~~~~~~~~------~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~---~~~~~~~~~h~~~i~~~~~  500 (564)
                      ..  +..+....      ..+..++|+|+|.        .+++++..++.|.+|++..   .+.+..+..+...+..++|
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~--------~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~  293 (347)
T 3hfq_A          222 AFTQLGIVKTIPADYTAHNGAAAIRLSHDGH--------FLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDL  293 (347)
T ss_dssp             EEEEEEEEESSCTTCCSCCEEEEEEECTTSC--------EEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEE
T ss_pred             ceEEeeeeeecCCCCCCCCcceeEEECCCCC--------EEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEE
Confidence            32  22222222      3478899999885        3456777899999999872   2556666666667899999


Q ss_pred             cCCCCEEEEEeCC-CcEEEE--eCCCCeEEE
Q 008467          501 SPTGEYLASGSLD-KSMHIW--SLKEGKIVK  528 (564)
Q Consensus       501 spdg~~lasgs~d-g~i~iw--~~~~~~~~~  528 (564)
                      +|||++|++++.+ +.|.+|  |..+|++..
T Consensus       294 spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~  324 (347)
T 3hfq_A          294 DPTEAFVVVVNQNTDNATLYARDLTSGKLSL  324 (347)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             CCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence            9999999888764 899999  666777654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.87  E-value=2.9e-19  Score=178.35  Aligned_cols=268  Identities=12%  Similarity=0.132  Sum_probs=180.0

Q ss_pred             CEEEEEeC----CCeEEEEECC---CceeEeecCCCCCEEEEEeCCCCCEEEEeeCC----CcEEEEECCC--cceeE--
Q 008467          288 TLLATGSY----DGQARIWSTN---GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD----KTAIVWDVKT--EEWKQ--  352 (564)
Q Consensus       288 ~~l~sg~~----dg~i~vw~~~---~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D----~~v~iwd~~~--~~~~~--  352 (564)
                      .+++.|++    ++.|.+|..+   +.+......+...+..++|+|+|++|++++.+    +.+.+|++..  +.+..  
T Consensus        14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~   93 (361)
T 3scy_A           14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLN   93 (361)
T ss_dssp             EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEE
T ss_pred             eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEee
Confidence            45566654    4688998753   33332221266677889999999999999886    7999998765  44333  


Q ss_pred             EEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEe------cC--------CCcceEEEEECCCCCEEEEEe
Q 008467          353 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF------AG--------HQGEVNCVKWDPTGSLLASCS  418 (564)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~------~~--------h~~~i~~v~~~~~~~~las~s  418 (564)
                      ....+......+.+.....+++...++.+.+|++.....+..+      .+        +...+.+++|+|+|++|++++
T Consensus        94 ~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~  173 (361)
T 3scy_A           94 TQKTMGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADD  173 (361)
T ss_dssp             EEECSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEE
T ss_pred             EeccCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEe
Confidence            2222334455666633334555557899999999754332211      11        123457899999999665544


Q ss_pred             -CCCcEEEEeCCCCee------e-------eecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE
Q 008467          419 -DDVTAKIWNMKQDKY------V-------HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL  484 (564)
Q Consensus       419 -~dg~i~iwd~~~~~~------~-------~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~  484 (564)
                       .++.|++|++.....      +       .....+......++|+|++.        .+++++..++.|.+|++.+++.
T Consensus       174 ~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~--------~l~v~~~~~~~v~v~~~~~g~~  245 (361)
T 3scy_A          174 LGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGK--------FAYLINEIGGTVIAFRYADGML  245 (361)
T ss_dssp             TTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSS--------EEEEEETTTCEEEEEEEETTEE
T ss_pred             CCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCC--------EEEEEcCCCCeEEEEEecCCce
Confidence             588999998765431      1       11123345578899999885        2344444799999999987754


Q ss_pred             --EEEEe---CCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEeCC--CCe--EEEEEecCCCEEEEEEccCCCEEEEEE-
Q 008467          485 --LYSLN---GHREPVYSLAFSPTGEYLASGSL--DKSMHIWSLK--EGK--IVKTYTGNGGIFEVCWNKEGDKIAACF-  552 (564)
Q Consensus       485 --~~~~~---~h~~~i~~~~~spdg~~lasgs~--dg~i~iw~~~--~~~--~~~~~~~~~~i~~~~w~~~g~~la~~~-  552 (564)
                        +..+.   .+...+..++|||||++|+++..  ++.|.+|++.  +++  .+..+.....+..++|+|+|++|+++. 
T Consensus       246 ~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~  325 (361)
T 3scy_A          246 DEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACR  325 (361)
T ss_dssp             EEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEET
T ss_pred             EEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEEC
Confidence              33332   23345789999999999976665  4899999985  555  444444444578999999999988887 


Q ss_pred             cCCcEEEEEee
Q 008467          553 ANHTVCVLDFR  563 (564)
Q Consensus       553 ~~~~v~v~~~~  563 (564)
                      .++.|.||.+.
T Consensus       326 ~~~~v~v~~~d  336 (361)
T 3scy_A          326 DTNVIQIFERD  336 (361)
T ss_dssp             TTTEEEEEEEC
T ss_pred             CCCCEEEEEEE
Confidence            57889997654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.87  E-value=7.4e-20  Score=181.28  Aligned_cols=275  Identities=11%  Similarity=0.059  Sum_probs=188.4

Q ss_pred             EEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEE-EEeCCCeE
Q 008467          221 ACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA-TGSYDGQA  299 (564)
Q Consensus       221 ~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~-sg~~dg~i  299 (564)
                      .+++++++.++++++.++.|++||+.+++..             .....   .....+..++|+|+|++++ ++..++.|
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~-------------~~~~~---~~~~~~~~~~~s~dg~~~~v~~~~~~~i   67 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVY-------------KSCVM---PDKFGPGTAMMAPDNRTAYVLNNHYGDI   67 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEE-------------EEEEC---SSCCSSCEEEECTTSSEEEEEETTTTEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEE-------------EEEec---CCCCCCceeEECCCCCEEEEEeCCCCcE
Confidence            4568889999999999999999998765321             11111   1112467899999998654 55578999


Q ss_pred             EEEECCC-ceeEeecCCC------CCEEEEEeCCCCCEEEEeeCC------------CcEEEEECCCcceeE---EEeec
Q 008467          300 RIWSTNG-DLKCTLSKHK------GPIFSLKWNKKGDYLLTGSCD------------KTAIVWDVKTEEWKQ---QFEFH  357 (564)
Q Consensus       300 ~vw~~~~-~~~~~~~~h~------~~V~~l~~~~~~~~l~s~s~D------------~~v~iwd~~~~~~~~---~~~~~  357 (564)
                      .+|+... .....+..+.      ..+.+++|+|+|++|++++.+            +.|.+||+.+++...   .+...
T Consensus        68 ~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~  147 (349)
T 1jmx_B           68 YGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP  147 (349)
T ss_dssp             EEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC
T ss_pred             EEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC
Confidence            9999864 4444443222      236789999999999998866            899999998854332   33222


Q ss_pred             ccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCC-c-----------------------ceEEEEECCCCCE
Q 008467          358 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-G-----------------------EVNCVKWDPTGSL  413 (564)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-~-----------------------~i~~v~~~~~~~~  413 (564)
                       ..+..+.|.++..++.++.  .|++|+..+++.+..+..+. .                       ...++++++++..
T Consensus       148 -~~~~~~~~s~dg~l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  224 (349)
T 1jmx_B          148 -RQVYLMRAADDGSLYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQ  224 (349)
T ss_dssp             -SSCCCEEECTTSCEEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-----
T ss_pred             -CcccceeECCCCcEEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcC
Confidence             2355666765544444433  49999998887776665332 0                       2345667665421


Q ss_pred             -----------EEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEcc-CCCCCCCCCCcEEEEEEeCCCeEEEEeCCC
Q 008467          414 -----------LASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP-TGSGTNNPNQQLILASASFDSTVKLWDVEL  481 (564)
Q Consensus       414 -----------las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p-~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~  481 (564)
                                 +.....++.+++|+.         ..+...+..++|+| ++.         +++++  ++.|.+||+.+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~sp~dg~---------~l~~~--~~~v~~~d~~~  284 (349)
T 1jmx_B          225 DPATADLLYGYLSVDLKTGKTHTQEF---------ADLTELYFTGLRSPKDPN---------QIYGV--LNRLAKYDLKQ  284 (349)
T ss_dssp             --CCCEEEEEEEEEETTTCCEEEEEE---------EECSSCEEEEEECSSCTT---------EEEEE--ESEEEEEETTT
T ss_pred             CccccccceeEEEEeccCCcEEeccc---------ccCCCcceeeEecCCCCC---------EEEEE--cCeEEEEECcc
Confidence                       112233445555543         23456678999999 875         45555  88999999999


Q ss_pred             CeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCC
Q 008467          482 GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG  535 (564)
Q Consensus       482 ~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~  535 (564)
                      ++.+..+... ..+.+++|+|||++|++++.++.|.+||+.+++.+..+...++
T Consensus       285 ~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~~~  337 (349)
T 1jmx_B          285 RKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGG  337 (349)
T ss_dssp             TEEEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSSS
T ss_pred             CeEEEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecCCC
Confidence            9988777643 3467999999999998888899999999999999888765443

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.86  E-value=1e-19  Score=180.24  Aligned_cols=270  Identities=13%  Similarity=0.073  Sum_probs=184.8

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEECCC-ceeEeecCCC-CCEEEEEeCCCCCEEE-EeeCCCcEEEEECCCcceeEEEee
Q 008467          280 TLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHK-GPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEF  356 (564)
Q Consensus       280 ~l~~s~~g~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~-~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~  356 (564)
                      .+++++++.++++++.++.|++||... .....+..+. ..+..++|+|+|++++ ++..++.|.+||+.+++....+..
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~   83 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   83 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence            346788899999999999999999764 4555554433 2567899999998764 556789999999999887776654


Q ss_pred             ccc------CeEEEEcCCCc-eEEEEeC------------CCeEEEEEcCCCc---eeeEecCCCcceEEEEECCCCCEE
Q 008467          357 HSG------PTLDVDWRNNV-SFATSST------------DNMIYVCKIGENR---PIKTFAGHQGEVNCVKWDPTGSLL  414 (564)
Q Consensus       357 ~~~------~~~~~~~~~~~-~~~~~~~------------d~~i~~~~~~~~~---~~~~~~~h~~~i~~v~~~~~~~~l  414 (564)
                      ...      .+..+.|.++. .+++++.            ++.|++|++.+++   .+..+..+ ..+.+++|+|+|+ +
T Consensus        84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~-l  161 (349)
T 1jmx_B           84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP-RQVYLMRAADDGS-L  161 (349)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC-SSCCCEEECTTSC-E
T ss_pred             ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC-CcccceeECCCCc-E
Confidence            321      24556665443 4444443            4899999997743   33444433 3588999999999 5


Q ss_pred             EEEeCCCcEEEEeCCCCeeeeecccccc------------------------cEEEEEEccCCCCCCCCCCcEEEEEEeC
Q 008467          415 ASCSDDVTAKIWNMKQDKYVHDLREHSK------------------------EIYTIRWSPTGSGTNNPNQQLILASASF  470 (564)
Q Consensus       415 as~s~dg~i~iwd~~~~~~~~~~~~~~~------------------------~i~~i~~~p~~~~~~~~~~~~~l~s~s~  470 (564)
                      +.++.  .|.+||..+++.+..+..+..                        ....+.+++++......        ...
T Consensus       162 ~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--------~~~  231 (349)
T 1jmx_B          162 YVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPAT--------ADL  231 (349)
T ss_dssp             EEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CC--------CEE
T ss_pred             EEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccc--------ccc
Confidence            55543  499999998887766543320                        22334454433210000        000


Q ss_pred             CCeEEEEeCCCCeE-EEEEeCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEE
Q 008467          471 DSTVKLWDVELGKL-LYSLNGHREPVYSLAFSP-TGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKI  548 (564)
Q Consensus       471 dg~i~iwd~~~~~~-~~~~~~h~~~i~~~~~sp-dg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~l  548 (564)
                      ...+..+|..+++. ...+..+...+..++|+| ||++|+++  ++.|.+||+.+++.++.+.....+..++|+|+|++|
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l  309 (349)
T 1jmx_B          232 LYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKL  309 (349)
T ss_dssp             EEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCE
T ss_pred             ceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEE
Confidence            01122244444432 122333566789999999 99999988  889999999999998888776678899999999999


Q ss_pred             EEEEcCCcEEEEEee
Q 008467          549 AACFANHTVCVLDFR  563 (564)
Q Consensus       549 a~~~~~~~v~v~~~~  563 (564)
                      +++..++.|.|||.+
T Consensus       310 ~~~~~~~~v~v~d~~  324 (349)
T 1jmx_B          310 YLGGTFNDLAVFNPD  324 (349)
T ss_dssp             EEESBSSEEEEEETT
T ss_pred             EEecCCCeEEEEecc
Confidence            988888999999974

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.86  E-value=3.2e-20  Score=203.30  Aligned_cols=279  Identities=12%  Similarity=0.096  Sum_probs=181.4

Q ss_pred             ceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccc-cCCCCeEEEEECCCCCEEEEEeCC
Q 008467          218 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTN-EKSKDVTTLDWNGEGTLLATGSYD  296 (564)
Q Consensus       218 ~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~V~~l~~s~~g~~l~sg~~d  296 (564)
                      ....++|+|+|.+|+++  |+.|++|++.++...             ....++.. ........++|||||++|+.++.+
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~   82 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSS-------------VFLENSTFDEFGHSINDYSISPDGQFILLEYNY   82 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEE-------------EEECTTTTTTCCSCCCEEEECTTSSEEEEEEEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceE-------------EEEechhhhhhcccccceEECCCCCEEEEEECC
Confidence            35578999999999986  999999999876421             01111111 111123458999999999998876


Q ss_pred             ---------CeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEe-ecccCeEEEEc
Q 008467          297 ---------GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE-FHSGPTLDVDW  366 (564)
Q Consensus       297 ---------g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~~~~~~~~  366 (564)
                               +.+.+||..+.....+..|.+.+...+|||+|+.|+.+ .|+.|.+||+.++...+... .+...+     
T Consensus        83 ~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~-----  156 (740)
T 4a5s_A           83 VKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDII-----  156 (740)
T ss_dssp             EECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTE-----
T ss_pred             eeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccce-----
Confidence                     56679999877666777888899999999999999887 57899999998876443211 111001     


Q ss_pred             CCCceEEEEeCCCeEEEEEcCCCceeeEecCCC---------cceEEEEECCCCCEEEEEeCC-----------------
Q 008467          367 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ---------GEVNCVKWDPTGSLLASCSDD-----------------  420 (564)
Q Consensus       367 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~---------~~i~~v~~~~~~~~las~s~d-----------------  420 (564)
                                                  +.|+.         +....+.|||||+.||.++.|                 
T Consensus       157 ----------------------------~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~  208 (740)
T 4a5s_A          157 ----------------------------YNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESL  208 (740)
T ss_dssp             ----------------------------EESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTC
T ss_pred             ----------------------------ecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCC
Confidence                                        11111         112235566666655554322                 


Q ss_pred             -------------------CcEEEEeCCC---Ce--eeeecc------cccccEEEEEEccCCCCCCCCCCcEEEEEEe-
Q 008467          421 -------------------VTAKIWNMKQ---DK--YVHDLR------EHSKEIYTIRWSPTGSGTNNPNQQLILASAS-  469 (564)
Q Consensus       421 -------------------g~i~iwd~~~---~~--~~~~~~------~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s-  469 (564)
                                         .+|++||+.+   +.  ....+.      .|...+..+.|+|+|.        .++.... 
T Consensus       209 ~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~--------~~~~~~~r  280 (740)
T 4a5s_A          209 QYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQER--------ISLQWLRR  280 (740)
T ss_dssp             SSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTE--------EEEEEEES
T ss_pred             CCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCe--------EEEEEeCC
Confidence                               2588899988   62  122333      3777899999999874        2222222 


Q ss_pred             --CCCeEEEEeCCCCe----EE--EEE--eCCCCCEE-----EEEEcCCCCEEE-EEeC-C--CcEEEEeCCCCeEEEEE
Q 008467          470 --FDSTVKLWDVELGK----LL--YSL--NGHREPVY-----SLAFSPTGEYLA-SGSL-D--KSMHIWSLKEGKIVKTY  530 (564)
Q Consensus       470 --~dg~i~iwd~~~~~----~~--~~~--~~h~~~i~-----~~~~spdg~~la-sgs~-d--g~i~iw~~~~~~~~~~~  530 (564)
                        .+..|++||+.+++    +.  ..+  .+|...|.     .++|||||+.|+ ..+. +  ..|++|++.+++.....
T Consensus       281 ~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT  360 (740)
T 4a5s_A          281 IQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFIT  360 (740)
T ss_dssp             STTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESC
T ss_pred             CCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecc
Confidence              23479999998876    32  122  44554444     789999999887 6664 3  46888898877665544


Q ss_pred             ecCCCEEEEEEccCCCEEEEEEcC
Q 008467          531 TGNGGIFEVCWNKEGDKIAACFAN  554 (564)
Q Consensus       531 ~~~~~i~~~~w~~~g~~la~~~~~  554 (564)
                      .+.-.+..+.+ +||+.|+..+..
T Consensus       361 ~g~~~v~~~~~-~d~~~i~f~~~~  383 (740)
T 4a5s_A          361 KGTWEVIGIEA-LTSDYLYYISNE  383 (740)
T ss_dssp             CSSSCEEEEEE-ECSSEEEEEESC
T ss_pred             cCCEEEEEEEE-EeCCEEEEEEec
Confidence            44445655442 447777765543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.85  E-value=1.9e-19  Score=181.41  Aligned_cols=273  Identities=12%  Similarity=0.105  Sum_probs=184.3

Q ss_pred             EEECCCCCEEEEEeC-CC--eEEEEECCCcee-EeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEee
Q 008467          281 LDWNGEGTLLATGSY-DG--QARIWSTNGDLK-CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF  356 (564)
Q Consensus       281 l~~s~~g~~l~sg~~-dg--~i~vw~~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~  356 (564)
                      .+|||||++|+.++. +|  .|.+|+..+... .....+...+.++.|+|+|++|+.++.++.+++||+.+++....+..
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~  120 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQV  120 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeec
Confidence            689999999999887 67  478888765443 44445555555778999999999999999999999999887766655


Q ss_pred             cccCeEEEEc--CCCc-eEEE----------------------EeCCCeEEEEEcCCCceeeEecCCCcceEEEEECC-C
Q 008467          357 HSGPTLDVDW--RNNV-SFAT----------------------SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-T  410 (564)
Q Consensus       357 ~~~~~~~~~~--~~~~-~~~~----------------------~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~-~  410 (564)
                      +...+....|  ..+. .++.                      ...+..|++|++.+++.. .+..+...+..++|+| |
T Consensus       121 ~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~d  199 (388)
T 3pe7_A          121 PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPYD  199 (388)
T ss_dssp             CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETTE
T ss_pred             hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCCC
Confidence            4443322333  2332 2321                      124467999999877643 4445667789999999 9


Q ss_pred             CCEEEEEeCC------CcEEEEeCCCCeeeeeccccc--ccEEEEEEccCCCCCCCCCCcEEEEEEeC-CC---eEEEEe
Q 008467          411 GSLLASCSDD------VTAKIWNMKQDKYVHDLREHS--KEIYTIRWSPTGSGTNNPNQQLILASASF-DS---TVKLWD  478 (564)
Q Consensus       411 ~~~las~s~d------g~i~iwd~~~~~~~~~~~~~~--~~i~~i~~~p~~~~~~~~~~~~~l~s~s~-dg---~i~iwd  478 (564)
                      |+.|+.++.+      ..|.++|..++.. ..+..+.  ..+..+.|+|+|..        ++..+.. .+   .|.+||
T Consensus       200 g~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~--------l~~~~~~~~~~~~~l~~~d  270 (388)
T 3pe7_A          200 DSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSA--------LVYVSYLKGSPDRFIYSAD  270 (388)
T ss_dssp             EEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSC--------EEEEEEETTCCCEEEEEEC
T ss_pred             CCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCE--------EEEEecCCCCCcceEEEEe
Confidence            9999887764      3677788765543 3344443  35778899999862        3232322 22   399999


Q ss_pred             CCCCeE--EEEEeCCCCC---EEEEEEcCCCCEEEEE---------eCCCcEEEEeCCCCeEEEEEecCC----------
Q 008467          479 VELGKL--LYSLNGHREP---VYSLAFSPTGEYLASG---------SLDKSMHIWSLKEGKIVKTYTGNG----------  534 (564)
Q Consensus       479 ~~~~~~--~~~~~~h~~~---i~~~~~spdg~~lasg---------s~dg~i~iw~~~~~~~~~~~~~~~----------  534 (564)
                      +.+++.  +..+.++...   ...++|||||++|+..         ..+..|++||+.++++........          
T Consensus       271 ~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~  350 (388)
T 3pe7_A          271 PETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQ  350 (388)
T ss_dssp             TTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSS
T ss_pred             cCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccc
Confidence            998874  3333331100   1123799999988854         456789999999987654443333          


Q ss_pred             -CEEEEEEccCCCEEEEEEc-CCcEEEEEee
Q 008467          535 -GIFEVCWNKEGDKIAACFA-NHTVCVLDFR  563 (564)
Q Consensus       535 -~i~~~~w~~~g~~la~~~~-~~~v~v~~~~  563 (564)
                       .+..++|+|||+.|+.++. ++...||.+.
T Consensus       351 ~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~  381 (388)
T 3pe7_A          351 VTHPHPSFTPDDKQILFTSDVHGKPALYLAT  381 (388)
T ss_dssp             TTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             cCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence             3678999999999887754 6666666543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.85  E-value=5.8e-21  Score=208.89  Aligned_cols=271  Identities=14%  Similarity=0.125  Sum_probs=189.2

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEECCCce-eEeecCCCC---CEEEEEeCCCCCEEEEeeC---------CCcEEEEECC
Q 008467          280 TLDWNGEGTLLATGSYDGQARIWSTNGDL-KCTLSKHKG---PIFSLKWNKKGDYLLTGSC---------DKTAIVWDVK  346 (564)
Q Consensus       280 ~l~~s~~g~~l~sg~~dg~i~vw~~~~~~-~~~~~~h~~---~V~~l~~~~~~~~l~s~s~---------D~~v~iwd~~  346 (564)
                      .++|+|+|+++++ +.||.|++|+..+.. ...+..|..   .|.+++|||+|++|++++.         |++|++||+.
T Consensus        20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            6789999965554 469999999987544 344444433   4889999999999998876         7899999999


Q ss_pred             CcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEe-cCCCcce-----------------EEEEEC
Q 008467          347 TEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF-AGHQGEV-----------------NCVKWD  408 (564)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~-~~h~~~i-----------------~~v~~~  408 (564)
                      +++....... ...+..+.|.++...++...++.|++|++..+...... .++...|                 .+++|+
T Consensus        99 ~g~~~~~~~l-~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wS  177 (719)
T 1z68_A           99 NGEFVRGNEL-PRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWS  177 (719)
T ss_dssp             TTEECCSSCC-CSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEEC
T ss_pred             CCccccceec-CcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEEC
Confidence            8876211111 23466788877665444445889999999776654322 2332222                 489999


Q ss_pred             CCCCEEEEEeCCC----------------------------------cEEEEeCCCCeee--------eecccccccEEE
Q 008467          409 PTGSLLASCSDDV----------------------------------TAKIWNMKQDKYV--------HDLREHSKEIYT  446 (564)
Q Consensus       409 ~~~~~las~s~dg----------------------------------~i~iwd~~~~~~~--------~~~~~~~~~i~~  446 (564)
                      |||+.||+++.|.                                  .|++||+.+++..        ..+..|...+..
T Consensus       178 PDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (719)
T 1z68_A          178 PNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSW  257 (719)
T ss_dssp             TTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEE
T ss_pred             CCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEE
Confidence            9999999988652                                  7889999887642        223467788999


Q ss_pred             EEEccCCCCCCCCCCcEEEEEEeC--C--CeEEEEe----CCCCeEEEEE----eCCCCCEE-----EEEEcCCCCEEEE
Q 008467          447 IRWSPTGSGTNNPNQQLILASASF--D--STVKLWD----VELGKLLYSL----NGHREPVY-----SLAFSPTGEYLAS  509 (564)
Q Consensus       447 i~~~p~~~~~~~~~~~~~l~s~s~--d--g~i~iwd----~~~~~~~~~~----~~h~~~i~-----~~~~spdg~~las  509 (564)
                      ++|+|++.         ++++...  +  ..|.+||    +.++++...+    .+|...+.     .++|||||+.|+.
T Consensus       258 ~~~SpD~~---------~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  328 (719)
T 1z68_A          258 LTWVTDER---------VCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYK  328 (719)
T ss_dssp             EEESSSSE---------EEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEE
T ss_pred             eEEeCCCe---------EEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEE
Confidence            99999853         4555332  2  2488899    8777655444    36666666     8899999996654


Q ss_pred             --EeCCC--cEEEEeCCCCeEEEEEe-cCCCEEEEEEccCCCEEEEEEcC-----CcEEEEEee
Q 008467          510 --GSLDK--SMHIWSLKEGKIVKTYT-GNGGIFEVCWNKEGDKIAACFAN-----HTVCVLDFR  563 (564)
Q Consensus       510 --gs~dg--~i~iw~~~~~~~~~~~~-~~~~i~~~~w~~~g~~la~~~~~-----~~v~v~~~~  563 (564)
                        ...+|  .|.+|++.+++. ..+. +...+..+.|. +|+.|++.+.+     +...+|.+.
T Consensus       329 ~~~~~~g~~~l~~~~~~~~~~-~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~  390 (719)
T 1z68_A          329 IFSDKDGYKHIHYIKDTVENA-IQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRIS  390 (719)
T ss_dssp             EEECTTSCEEEEEESSCSTTC-EECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred             EEEccCCceEEEEEECCCCce-EecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEe
Confidence              44555  577778877763 3333 33457777777 88888877765     677888664

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.84  E-value=5.4e-18  Score=169.10  Aligned_cols=256  Identities=12%  Similarity=0.078  Sum_probs=172.4

Q ss_pred             CCeEEEEECCCCCEEEEEeCC----CeEEEEECCC---cee--EeecCCCCCEEEEEeCCCCCEEEEee-CCCcEEEEEC
Q 008467          276 KDVTTLDWNGEGTLLATGSYD----GQARIWSTNG---DLK--CTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDV  345 (564)
Q Consensus       276 ~~V~~l~~s~~g~~l~sg~~d----g~i~vw~~~~---~~~--~~~~~h~~~V~~l~~~~~~~~l~s~s-~D~~v~iwd~  345 (564)
                      ..+..++|+|+|++|++++.+    |.+.+|+.+.   .+.  .....+......+++  ++++|++++ .++++.+|++
T Consensus        50 ~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~  127 (361)
T 3scy_A           50 ANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPI  127 (361)
T ss_dssp             SCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEB
T ss_pred             CCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEe
Confidence            456779999999999999886    7999998643   322  233445556777888  788777666 6789999999


Q ss_pred             CCcceeEEE---eec-----------ccCeEEEEcCCCc--eEEEEeCCCeEEEEEcCCCce------e-------eEec
Q 008467          346 KTEEWKQQF---EFH-----------SGPTLDVDWRNNV--SFATSSTDNMIYVCKIGENRP------I-------KTFA  396 (564)
Q Consensus       346 ~~~~~~~~~---~~~-----------~~~~~~~~~~~~~--~~~~~~~d~~i~~~~~~~~~~------~-------~~~~  396 (564)
                      ........+   ..+           ...+..+.|.++.  .+++...++.|++|++.....      +       ....
T Consensus       128 ~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~  207 (361)
T 3scy_A          128 GQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV  207 (361)
T ss_dssp             CTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC
T ss_pred             CCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceec
Confidence            754322111   111           1123557776554  445556688999998875431      1       1122


Q ss_pred             CCCcceEEEEECCCCCEEEEEe-CCCcEEEEeCCCCee--eeec---ccccccEEEEEEccCCCCCCCCCCcEEEEEEeC
Q 008467          397 GHQGEVNCVKWDPTGSLLASCS-DDVTAKIWNMKQDKY--VHDL---REHSKEIYTIRWSPTGSGTNNPNQQLILASASF  470 (564)
Q Consensus       397 ~h~~~i~~v~~~~~~~~las~s-~dg~i~iwd~~~~~~--~~~~---~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~  470 (564)
                      .+...+..++|+|+|+++++++ .++.|.+|++.++..  +..+   ..+......++|+|++.        .++++...
T Consensus       208 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~--------~l~v~~~~  279 (361)
T 3scy_A          208 APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGK--------YLYASNRL  279 (361)
T ss_dssp             CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSS--------EEEEEECS
T ss_pred             CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCC--------EEEEECCC
Confidence            3345678999999999877766 689999999986654  2222   22334568999999885        23344444


Q ss_pred             -CCeEEEEeCC--CCe--EEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEE--eCCCCeEEEEEe--cCCCEEEEE
Q 008467          471 -DSTVKLWDVE--LGK--LLYSLNGHREPVYSLAFSPTGEYLASGS-LDKSMHIW--SLKEGKIVKTYT--GNGGIFEVC  540 (564)
Q Consensus       471 -dg~i~iwd~~--~~~--~~~~~~~h~~~i~~~~~spdg~~lasgs-~dg~i~iw--~~~~~~~~~~~~--~~~~i~~~~  540 (564)
                       ++.|.+|++.  +++  .+..+.. ...+.+++|+|||++|++++ .++.|.+|  |..+|++.....  ....+.+++
T Consensus       280 ~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~  358 (361)
T 3scy_A          280 KADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLK  358 (361)
T ss_dssp             SSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEE
T ss_pred             CCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEE
Confidence             5899999985  454  4444544 45678999999999998887 67899995  555777654421  224577888


Q ss_pred             Ec
Q 008467          541 WN  542 (564)
Q Consensus       541 w~  542 (564)
                      |.
T Consensus       359 ~~  360 (361)
T 3scy_A          359 FV  360 (361)
T ss_dssp             EE
T ss_pred             Ec
Confidence            75

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.82  E-value=2.2e-17  Score=165.06  Aligned_cols=264  Identities=14%  Similarity=0.133  Sum_probs=176.9

Q ss_pred             EEEEeCC--CeEEEEEC--C-CceeEe--e-cCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECC-CcceeEEEeec-cc
Q 008467          290 LATGSYD--GQARIWST--N-GDLKCT--L-SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK-TEEWKQQFEFH-SG  359 (564)
Q Consensus       290 l~sg~~d--g~i~vw~~--~-~~~~~~--~-~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~-~~~~~~~~~~~-~~  359 (564)
                      +++|++.  +.|.+|+.  . +.+...  . ......+..++|+|+|++|++++.+ +|.+||+. ++++....... .+
T Consensus         5 ~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g   83 (365)
T 1jof_A            5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGG   83 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCS
T ss_pred             EEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCC
Confidence            4555553  45777653  2 333211  1 1233467789999999999999888 99999997 77665433321 12


Q ss_pred             CeEEEEcCCCce--EE-EEe-------------CCCeEEEEEcCC-CceeeEec----CCCcceEEEEECCCCCEEEEEe
Q 008467          360 PTLDVDWRNNVS--FA-TSS-------------TDNMIYVCKIGE-NRPIKTFA----GHQGEVNCVKWDPTGSLLASCS  418 (564)
Q Consensus       360 ~~~~~~~~~~~~--~~-~~~-------------~d~~i~~~~~~~-~~~~~~~~----~h~~~i~~v~~~~~~~~las~s  418 (564)
                      ....+.|.++..  ++ ++.             .++.+.+|++.. +.....+.    .+...+.+++|+|+|++|+++.
T Consensus        84 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~  163 (365)
T 1jof_A           84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD  163 (365)
T ss_dssp             SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred             CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEc
Confidence            233466666554  33 332             688999999974 44333332    2456789999999999887765


Q ss_pred             C-CCcEEEEeCC-CCeee--eecc--cccccEEEEEEccCCCCCCCCCCcEEEEEEe-CCCeEEEEeCC--CCeEEE---
Q 008467          419 D-DVTAKIWNMK-QDKYV--HDLR--EHSKEIYTIRWSPTGSGTNNPNQQLILASAS-FDSTVKLWDVE--LGKLLY---  486 (564)
Q Consensus       419 ~-dg~i~iwd~~-~~~~~--~~~~--~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~--~~~~~~---  486 (564)
                      . ++.|++|++. +++..  ..+.  .|...+..++|+|+|.         +|++++ .+++|.+|++.  +++...   
T Consensus       164 ~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~---------~l~v~~~~~~~v~v~~~~~~~g~~~~~~~  234 (365)
T 1jof_A          164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGN---------YLYALMEAGNRICEYVIDPATHMPVYTHH  234 (365)
T ss_dssp             TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSS---------EEEEEETTTTEEEEEEECTTTCCEEEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCC---------EEEEEECCCCeEEEEEEeCCCCcEEEccc
Confidence            4 6899999998 66542  2333  2356689999999885         455544 57899999765  565432   


Q ss_pred             EEe-------CCCC------CEEEEE-EcCCCCEEEEEeCC-C-----cEEEEeCC-CCeEEEE---Eec-CCCEEEEEE
Q 008467          487 SLN-------GHRE------PVYSLA-FSPTGEYLASGSLD-K-----SMHIWSLK-EGKIVKT---YTG-NGGIFEVCW  541 (564)
Q Consensus       487 ~~~-------~h~~------~i~~~~-~spdg~~lasgs~d-g-----~i~iw~~~-~~~~~~~---~~~-~~~i~~~~w  541 (564)
                      .+.       +|..      .+..++ |||||++|++++.+ .     .|.+|++. +|++...   ... ...+..++|
T Consensus       235 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~  314 (365)
T 1jof_A          235 SFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAV  314 (365)
T ss_dssp             EEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCE
T ss_pred             eEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCccccee
Confidence            222       1222      488999 99999998876543 2     89999996 6776542   222 234667899


Q ss_pred             cc---CCCEEEEEEc-CCcEEEEEee
Q 008467          542 NK---EGDKIAACFA-NHTVCVLDFR  563 (564)
Q Consensus       542 ~~---~g~~la~~~~-~~~v~v~~~~  563 (564)
                      +|   ||++|+++.. ++.|.||++.
T Consensus       315 sp~~~dg~~l~v~~~~~~~v~v~~~~  340 (365)
T 1jof_A          315 SPCPWSDEWMAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             EECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred             cCCCcCCCEEEEEEcCCCeEEEEEEc
Confidence            99   8999998876 4899999874

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.82  E-value=5e-18  Score=169.69  Aligned_cols=246  Identities=11%  Similarity=0.083  Sum_probs=165.9

Q ss_pred             cceEEEEECCCCCEEEEEECCCcEEEEeCC-CCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE--EEEE
Q 008467          217 SEVCACAWSPAGSLLASGSGDSTARIWTIA-DGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL--LATG  293 (564)
Q Consensus       217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~--l~sg  293 (564)
                      ..+..++|+|+|++|++++.+ .+.+|++. ++..           ........     ...+.+++|+|+|++  ++++
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~-----------~~~~~~~~-----~g~~~~~~~spdg~~l~~~~~  102 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEI-----------VHEASHPI-----GGHPRANDADTNTRAIFLLAA  102 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEE-----------EEEEEEEC-----CSSGGGGCTTSCCEEEEEEEC
T ss_pred             CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCE-----------EEeeEeec-----CCCCccEEECCCCCEEEEEEe
Confidence            457789999999999998888 99999985 4321           00111100     012445789999994  5555


Q ss_pred             e-------------CCCeEEEEECC--CceeEeec----CCCCCEEEEEeCCCCCEEEEeeC-CCcEEEEECC-CcceeE
Q 008467          294 S-------------YDGQARIWSTN--GDLKCTLS----KHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVK-TEEWKQ  352 (564)
Q Consensus       294 ~-------------~dg~i~vw~~~--~~~~~~~~----~h~~~V~~l~~~~~~~~l~s~s~-D~~v~iwd~~-~~~~~~  352 (564)
                      .             .+|.+++|+..  +.+...+.    .+...+.+++|+|+|++|++++. +++|++||+. +++...
T Consensus       103 ~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~  182 (365)
T 1jof_A          103 KQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVEL  182 (365)
T ss_dssp             SSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEE
T ss_pred             cCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEE
Confidence            3             68999999974  44443332    25567899999999998887654 6799999987 554321


Q ss_pred             EEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC-CCcEEEEeCC--
Q 008467          353 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAKIWNMK--  429 (564)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~-dg~i~iwd~~--  429 (564)
                      ...                                     ..+..|...+..++|+|+|+++++++. ++.|.+|++.  
T Consensus       183 ~~~-------------------------------------~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~  225 (365)
T 1jof_A          183 VGS-------------------------------------VDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             EEE-------------------------------------EECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             eee-------------------------------------EecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCC
Confidence            100                                     001113445778999999999887765 7899999765  


Q ss_pred             CCeee------eecc----cccc------cEEEEE-EccCCCCCCCCCCcEEEEEEeC-CC-----eEEEEeCC-CCeEE
Q 008467          430 QDKYV------HDLR----EHSK------EIYTIR-WSPTGSGTNNPNQQLILASASF-DS-----TVKLWDVE-LGKLL  485 (564)
Q Consensus       430 ~~~~~------~~~~----~~~~------~i~~i~-~~p~~~~~~~~~~~~~l~s~s~-dg-----~i~iwd~~-~~~~~  485 (564)
                      +++..      ..+.    +|..      .+..++ |+|+|.         +|++++. ++     +|++|++. +++..
T Consensus       226 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~---------~l~v~~~~~~~~~~~~i~v~~~~~~g~~~  296 (365)
T 1jof_A          226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGK---------YMFASSRANKFELQGYIAGFKLRDCGSIE  296 (365)
T ss_dssp             TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSS---------EEEEEEEESSTTSCCEEEEEEECTTSCEE
T ss_pred             CCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCC---------EEEEECCCCCCCCCCeEEEEEECCCCCEE
Confidence            44432      1221    1222      478899 999885         3444432 23     89999986 56654


Q ss_pred             E---EEeCCCCCEEEEEEcC---CCCEEEEEeCC-CcEEEEeCCCCe
Q 008467          486 Y---SLNGHREPVYSLAFSP---TGEYLASGSLD-KSMHIWSLKEGK  525 (564)
Q Consensus       486 ~---~~~~h~~~i~~~~~sp---dg~~lasgs~d-g~i~iw~~~~~~  525 (564)
                      .   ....+...+..++|+|   ||++|++++.+ +.|.+|++....
T Consensus       297 ~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~  343 (365)
T 1jof_A          297 KQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             EEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             EeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhh
Confidence            3   2333444567899999   89999998864 899999987664

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.81  E-value=1.6e-18  Score=174.85  Aligned_cols=271  Identities=12%  Similarity=0.059  Sum_probs=179.8

Q ss_pred             eEEEEECCCCCEEEEEeCC---CeEEEEECCCceeEeecCCCCCE-EEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEE
Q 008467          278 VTTLDWNGEGTLLATGSYD---GQARIWSTNGDLKCTLSKHKGPI-FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ  353 (564)
Q Consensus       278 V~~l~~s~~g~~l~sg~~d---g~i~vw~~~~~~~~~~~~h~~~V-~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~  353 (564)
                      +..++|||||++|+.....   ..|.+|+..+.....+..+...+ ..+.|+|+|++|+.++.++.|.+||+.+++....
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~  117 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI  117 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence            5567899999998877543   46888888765555554444333 3378999999999999999999999998876655


Q ss_pred             EeecccCeEE-------------------EEcCCCce-EEEE-----eCCCeEEEEEcCCCceeeEecCCCcceEEEEEC
Q 008467          354 FEFHSGPTLD-------------------VDWRNNVS-FATS-----STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWD  408 (564)
Q Consensus       354 ~~~~~~~~~~-------------------~~~~~~~~-~~~~-----~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~  408 (564)
                      +..+.....+                   ..|.++.. ++..     ..+..|++|++..++..... .+...+..+.|+
T Consensus       118 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~s  196 (396)
T 3c5m_A          118 YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYR  196 (396)
T ss_dssp             EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEE
T ss_pred             EecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceEC
Confidence            5433321111                   12222211 1111     35567899999877654443 466778999999


Q ss_pred             C-CCCEEEEEeCC------CcEEEEeCCCCeeeeecccc--cccEEEEEEccCCCCCCCCCCcEEEEEEeCC-----CeE
Q 008467          409 P-TGSLLASCSDD------VTAKIWNMKQDKYVHDLREH--SKEIYTIRWSPTGSGTNNPNQQLILASASFD-----STV  474 (564)
Q Consensus       409 ~-~~~~las~s~d------g~i~iwd~~~~~~~~~~~~~--~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d-----g~i  474 (564)
                      | +++.|+.++.+      ..|.+||+.++... .+..+  ...+..+.|+|++.         .|+.++.+     +.|
T Consensus       197 p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~---------~l~~~~~~~~~~~~~l  266 (396)
T 3c5m_A          197 PFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGS---------AMAYVSYFKGQTDRVI  266 (396)
T ss_dssp             TTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSS---------CEEEEEEETTTCCEEE
T ss_pred             CCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCC---------EEEEEecCCCCccceE
Confidence            9 88877776654      35888888765433 23333  23578899999885         23334332     459


Q ss_pred             EEEeCCCCeEEEEEeCCCCCEEEEEEcC-CCCEEEEEe----------------CCCcEEEEeCCCCeEEEEEecCC---
Q 008467          475 KLWDVELGKLLYSLNGHREPVYSLAFSP-TGEYLASGS----------------LDKSMHIWSLKEGKIVKTYTGNG---  534 (564)
Q Consensus       475 ~iwd~~~~~~~~~~~~h~~~i~~~~~sp-dg~~lasgs----------------~dg~i~iw~~~~~~~~~~~~~~~---  534 (564)
                      ++||+.+++....... . ... ++|+| ||++|++++                .++.|++||+.++++........   
T Consensus       267 ~~~d~~~g~~~~l~~~-~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~  343 (396)
T 3c5m_A          267 YKANPETLENEEVMVM-P-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWD  343 (396)
T ss_dssp             EEECTTTCCEEEEEEC-C-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCC
T ss_pred             EEEECCCCCeEEeeeC-C-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccc
Confidence            9999988865432221 1 233 89999 999998765                34789999999887544333332   


Q ss_pred             --------CEEEEEEccCCCEEEEEEc-CCcEEEEEe
Q 008467          535 --------GIFEVCWNKEGDKIAACFA-NHTVCVLDF  562 (564)
Q Consensus       535 --------~i~~~~w~~~g~~la~~~~-~~~v~v~~~  562 (564)
                              .+..++|+|||+.|++++. ++...||-+
T Consensus       344 ~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~  380 (396)
T 3c5m_A          344 VLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA  380 (396)
T ss_dssp             CBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             cccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence                    1567899999999987765 455555544

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.81  E-value=1.6e-17  Score=165.49  Aligned_cols=280  Identities=9%  Similarity=0.099  Sum_probs=188.7

Q ss_pred             CCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeC----------CCeEEEEECC
Q 008467          236 GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY----------DGQARIWSTN  305 (564)
Q Consensus       236 ~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~----------dg~i~vw~~~  305 (564)
                      .|+.+.+||..+++..             .....    ...+  .++|+|||++++++..          ++.|.+||..
T Consensus        29 ~d~~v~v~D~~t~~~~-------------~~i~~----g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~   89 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFL-------------GMVPT----AFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDAD   89 (361)
T ss_dssp             GGCEEEEEETTTCCEE-------------EEEEC----CEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETT
T ss_pred             ccCeEEEEECCCCeEE-------------EEecC----CCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECc
Confidence            4789999998765421             11111    1122  7899999999998863          5789999975


Q ss_pred             C-ceeEeecC------CCCCEEEEEeCCCCCEEEEeeC--CCcEEEEECCCcceeEE-EeecccCeEEEEcCCCceEEEE
Q 008467          306 G-DLKCTLSK------HKGPIFSLKWNKKGDYLLTGSC--DKTAIVWDVKTEEWKQQ-FEFHSGPTLDVDWRNNVSFATS  375 (564)
Q Consensus       306 ~-~~~~~~~~------h~~~V~~l~~~~~~~~l~s~s~--D~~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  375 (564)
                      . +....+..      +......++++|+|++|+++..  +++|.+||+.+++.+.. +.........+.......+++.
T Consensus        90 t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~  169 (361)
T 2oiz_A           90 KLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTI  169 (361)
T ss_dssp             TCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEE
T ss_pred             CCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEE
Confidence            3 44444432      2234567899999999998864  68999999999887765 4322111112222334678888


Q ss_pred             eCCCeEEEEEcCC-Ccee------eEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCee--eeeccc------c
Q 008467          376 STDNMIYVCKIGE-NRPI------KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY--VHDLRE------H  440 (564)
Q Consensus       376 ~~d~~i~~~~~~~-~~~~------~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~--~~~~~~------~  440 (564)
                      +.|+.+.+++... ++..      ..+..+..++ .+.+++++..++..+.++.+.+||+.....  +..+..      +
T Consensus       170 ~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~  248 (361)
T 2oiz_A          170 CGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKA  248 (361)
T ss_dssp             ETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHH
T ss_pred             CCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccc
Confidence            8999988888765 3332      1122222222 233356777777788899999999865432  111110      0


Q ss_pred             c----ccEEEEEEccCCCCCCCCCCcEEEEEEe----------CCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCE
Q 008467          441 S----KEIYTIRWSPTGSGTNNPNQQLILASAS----------FDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY  506 (564)
Q Consensus       441 ~----~~i~~i~~~p~~~~~~~~~~~~~l~s~s----------~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~  506 (564)
                      .    .....++++|++.        .++++.+          ..++|.+||+.+++.+.++..+.  +.+++|+|||++
T Consensus       249 ~~~~p~g~~~~a~~~dg~--------~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~  318 (361)
T 2oiz_A          249 KNWVPGGYNLVGLHRASG--------RMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNL  318 (361)
T ss_dssp             TTCEECCSSCEEEETTTT--------EEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTE
T ss_pred             cccccCCeeEEEEecCCC--------eEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCE
Confidence            0    0011256677653        3444443          13589999999999999998776  899999999999


Q ss_pred             EEEEeCCCcEEEEeCCCC--eEEEEEe-cCCCEEEEEEccCCC
Q 008467          507 LASGSLDKSMHIWSLKEG--KIVKTYT-GNGGIFEVCWNKEGD  546 (564)
Q Consensus       507 lasgs~dg~i~iw~~~~~--~~~~~~~-~~~~i~~~~w~~~g~  546 (564)
                      |++++. +.|.+||..++  ++++++. .......++++|+|.
T Consensus       319 l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          319 MLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             EEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             EEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            998887 99999999999  9998874 345678999999985

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.81  E-value=4.3e-18  Score=184.28  Aligned_cols=281  Identities=10%  Similarity=0.045  Sum_probs=186.9

Q ss_pred             eEccCCccceEEEEECCCCCEEEEE--ECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeE--------
Q 008467          210 TILEGHTSEVCACAWSPAGSLLASG--SGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVT--------  279 (564)
Q Consensus       210 ~~l~~h~~~V~~~~~sp~~~~lasg--s~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--------  279 (564)
                      ..+.+|...|..++|++++-+++++  +.++...||....+...             +....    +...|.        
T Consensus        17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------------~~l~~----~~~~~~~~~~~~~~   79 (662)
T 3azo_A           17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAE-------------ESALP----APWNVRNRVFEYSG   79 (662)
T ss_dssp             HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCE-------------EESSC----TTCCBCCCGGGTCC
T ss_pred             HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCc-------------ceeCC----CCccccccccccCC
Confidence            3467889999999999887777777  56889999986332110             01100    111222        


Q ss_pred             -EEEEC--CCCCE-EEEEeC-CCeEEEEECC--C-ceeEeecC-----CCCCEEEEEeCCCCCEEEEeeCC---------
Q 008467          280 -TLDWN--GEGTL-LATGSY-DGQARIWSTN--G-DLKCTLSK-----HKGPIFSLKWNKKGDYLLTGSCD---------  337 (564)
Q Consensus       280 -~l~~s--~~g~~-l~sg~~-dg~i~vw~~~--~-~~~~~~~~-----h~~~V~~l~~~~~~~~l~s~s~D---------  337 (564)
                       ...|+  |||+. |+.++. +..|.+|+..  + .....+..     |...+.+++|+|+|+.|++++.|         
T Consensus        80 ~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~  159 (662)
T 3azo_A           80 FPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDV  159 (662)
T ss_dssp             CCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCE
T ss_pred             ccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCc
Confidence             34455  99998 776654 5677788876  3 44445555     67788999999999999988876         


Q ss_pred             -CcEEEEECCC------cceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEec-CCCcceEEEEECC
Q 008467          338 -KTAIVWDVKT------EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDP  409 (564)
Q Consensus       338 -~~v~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~h~~~i~~v~~~~  409 (564)
                       .+|++||+.+      +.                                          ...+. .+...+..++|+|
T Consensus       160 ~~~i~~~~~~~~~~~~~~~------------------------------------------~~~l~~~~~~~~~~~~~Sp  197 (662)
T 3azo_A          160 RRFLAAVPLDGSAAADRSA------------------------------------------VRELSDDAHRFVTGPRLSP  197 (662)
T ss_dssp             EEEEEEEETTSTTTTCGGG------------------------------------------SEESSCSCSSEECCCEECT
T ss_pred             eeEEEEEECCCCccccCCc------------------------------------------eeEEEecCCCcccCceECC
Confidence             3566666654      22                                          12233 3445677789999


Q ss_pred             CCCEEEEEeCC--------CcEEEEeCC-CC---eeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCC--eEE
Q 008467          410 TGSLLASCSDD--------VTAKIWNMK-QD---KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS--TVK  475 (564)
Q Consensus       410 ~~~~las~s~d--------g~i~iwd~~-~~---~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg--~i~  475 (564)
                      ||+.|+.++.+        ..|.+||+. ++   ........|...+..+.|+|+|.         ++++++.++  .|.
T Consensus       198 DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~---------l~~~~~~~~~~~l~  268 (662)
T 3azo_A          198 DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS---------LIVATDRTGWWNLH  268 (662)
T ss_dssp             TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC---------EEEEECTTSSCEEE
T ss_pred             CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe---------EEEEECCCCCeEEE
Confidence            99999888755        379999998 46   33333344567899999999875         677788888  677


Q ss_pred             EEeCCCCeEEEEEeCCCCC--------EEEEEEcCCCCEEEEEeCCCcEEEE--eCCCCeEEEEEecCC-CEEEEEEccC
Q 008467          476 LWDVELGKLLYSLNGHREP--------VYSLAFSPTGEYLASGSLDKSMHIW--SLKEGKIVKTYTGNG-GIFEVCWNKE  544 (564)
Q Consensus       476 iwd~~~~~~~~~~~~h~~~--------i~~~~~spdg~~lasgs~dg~i~iw--~~~~~~~~~~~~~~~-~i~~~~w~~~  544 (564)
                      +||+.+++.......+...        +.+++|+|+++++++++. +.++||  ++.+++ +..+..+. .+..+ |+++
T Consensus       269 ~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~-~s~~  345 (662)
T 3azo_A          269 RVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAAT-LTVS  345 (662)
T ss_dssp             EECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEE-EEEE
T ss_pred             EEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEE-EecC
Confidence            7777667654333333221        567899999999999999 999999  656665 45555443 34444 3566


Q ss_pred             CCEEEE--EEcCCcEEEEE
Q 008467          545 GDKIAA--CFANHTVCVLD  561 (564)
Q Consensus       545 g~~la~--~~~~~~v~v~~  561 (564)
                      |+.++.  ++.+....||.
T Consensus       346 ~~~~~~~~~~~~~~~~i~~  364 (662)
T 3azo_A          346 GTRAVGVAASPRTAYEVVE  364 (662)
T ss_dssp             TTEEEEEEEETTEEEEEEE
T ss_pred             CCEEEEEEcCCCCCCEEEE
Confidence            665443  34444444543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.81  E-value=9.8e-18  Score=168.80  Aligned_cols=285  Identities=12%  Similarity=-0.002  Sum_probs=182.5

Q ss_pred             eeEccCCccceEE-----EEECCCCCEEEEEEC-CCc--EEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEE
Q 008467          209 VTILEGHTSEVCA-----CAWSPAGSLLASGSG-DST--ARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTT  280 (564)
Q Consensus       209 ~~~l~~h~~~V~~-----~~~sp~~~~lasgs~-D~~--i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~  280 (564)
                      +..+..|...+..     .+|||||++||.++. ++.  +.+|++.++...              ..   ...+...+..
T Consensus        23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~--------------~l---t~~~~~~~~~   85 (388)
T 3pe7_A           23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVAT--------------QL---TEGRGDNTFG   85 (388)
T ss_dssp             EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEE--------------EC---CCSSCBCSSS
T ss_pred             eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceE--------------Ee---eeCCCCCccc
Confidence            3455556655555     789999999999887 674  777787665311              11   0111223335


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEECCCc-eeEeecCCCCCEEEEE--eCCCCCEEEEe----------------------e
Q 008467          281 LDWNGEGTLLATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLK--WNKKGDYLLTG----------------------S  335 (564)
Q Consensus       281 l~~s~~g~~l~sg~~dg~i~vw~~~~~-~~~~~~~h~~~V~~l~--~~~~~~~l~s~----------------------s  335 (564)
                      +.|+|||+.|+.++.++.+++|+..+. .......+...+....  ++|++.+++..                      .
T Consensus        86 ~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (388)
T 3pe7_A           86 GFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTK  165 (388)
T ss_dssp             CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGC
T ss_pred             eEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccC
Confidence            689999999999999999999998754 3334444555454444  48999988742                      2


Q ss_pred             CCCcEEEEECCCcceeEEEeecccCeEEEEcCC-Cc-eEEEEeC------CCeEEEEEcCCCceeeEecCCC--cceEEE
Q 008467          336 CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NV-SFATSST------DNMIYVCKIGENRPIKTFAGHQ--GEVNCV  405 (564)
Q Consensus       336 ~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~------d~~i~~~~~~~~~~~~~~~~h~--~~i~~v  405 (564)
                      .+..|.+||+.+++.... ..+...+..+.|.+ +. .++.+..      ...|++++....... .+..+.  ..+..+
T Consensus       166 ~~~~l~~~d~~~g~~~~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~  243 (388)
T 3pe7_A          166 PCCRLMRVDLKTGESTVI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHE  243 (388)
T ss_dssp             CCEEEEEEETTTCCEEEE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEE
T ss_pred             CcceEEEEECCCCceEEe-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccc
Confidence            456899999998875543 33445567778876 54 3444433      337888887655443 333343  357789


Q ss_pred             EECCCCCEEEEEeC-CC----cEEEEeCCCCeee--eeccccccc---EEEEEEccCCCCCCCCCCcEEEEE--------
Q 008467          406 KWDPTGSLLASCSD-DV----TAKIWNMKQDKYV--HDLREHSKE---IYTIRWSPTGSGTNNPNQQLILAS--------  467 (564)
Q Consensus       406 ~~~~~~~~las~s~-dg----~i~iwd~~~~~~~--~~~~~~~~~---i~~i~~~p~~~~~~~~~~~~~l~s--------  467 (564)
                      +|+|||+.|+..+. ++    .|.+||+.+++..  ..+..+...   ...+.|+|+|..        ++++        
T Consensus       244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~--------l~~~~~~~~~~~  315 (388)
T 3pe7_A          244 FWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSD--------APVDVQDDSGYK  315 (388)
T ss_dssp             EECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECC--------C-----------
T ss_pred             eECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCc--------ceeEeeeccccc
Confidence            99999997765443 22    3999999887642  222221100   011267887752        2222        


Q ss_pred             EeCCCeEEEEeCCCCeEEEEEeCCCC-----------CEEEEEEcCCCCEEEEEe-CCCcEEEEeC
Q 008467          468 ASFDSTVKLWDVELGKLLYSLNGHRE-----------PVYSLAFSPTGEYLASGS-LDKSMHIWSL  521 (564)
Q Consensus       468 ~s~dg~i~iwd~~~~~~~~~~~~h~~-----------~i~~~~~spdg~~lasgs-~dg~i~iw~~  521 (564)
                      ...+..|++||+.+++. ..+..+..           .+.+++|||||++|+.++ .+|...||.+
T Consensus       316 ~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~  380 (388)
T 3pe7_A          316 IENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA  380 (388)
T ss_dssp             -CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             cCCCCEEEEEeccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence            25577999999998765 44554554           578899999999888766 4666666654

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.80  E-value=8.5e-17  Score=158.25  Aligned_cols=247  Identities=12%  Similarity=0.143  Sum_probs=183.2

Q ss_pred             CCCeEEEEECCCCCEEEEEeCC------------------------CeEEEEECC-CceeEeec-CCCCCEEEEEeCCCC
Q 008467          275 SKDVTTLDWNGEGTLLATGSYD------------------------GQARIWSTN-GDLKCTLS-KHKGPIFSLKWNKKG  328 (564)
Q Consensus       275 ~~~V~~l~~s~~g~~l~sg~~d------------------------g~i~vw~~~-~~~~~~~~-~h~~~V~~l~~~~~~  328 (564)
                      -..|.+++++++|+++++...+                        +.|.+|+.. +.+...+. .+-....+++++|+|
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            4679999999999999988877                        479999985 66655443 444678999999999


Q ss_pred             CEEEEeeCCCcEEEEECCCcc-eeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEE
Q 008467          329 DYLLTGSCDKTAIVWDVKTEE-WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKW  407 (564)
Q Consensus       329 ~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~  407 (564)
                      +.+++.+.+++|++||..... .+..+.....                                ...-.++-.....+++
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~--------------------------------~g~~~~~~~~P~~ia~  150 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQ--------------------------------PGSDQNHFCQPTDVAV  150 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEESBTTB--------------------------------CCCSTTCCSSEEEEEE
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEecccCC--------------------------------CCCCccccCCCcEEEE
Confidence            988888889999999975432 2221110000                                0000123446789999


Q ss_pred             CC-CCCEEEEEe-CCCcEEEEeCCCCeeeeecccc----------cccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEE
Q 008467          408 DP-TGSLLASCS-DDVTAKIWNMKQDKYVHDLREH----------SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVK  475 (564)
Q Consensus       408 ~~-~~~~las~s-~dg~i~iwd~~~~~~~~~~~~~----------~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~  475 (564)
                      +| ++.++++.+ .++.|++|+ ..+..+..+...          -.....++++|++.        .++++...++.|+
T Consensus       151 ~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g--------~l~v~d~~~~~I~  221 (329)
T 3fvz_A          151 EPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLD--------QLCVADRENGRIQ  221 (329)
T ss_dssp             CTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTT--------EEEEEETTTTEEE
T ss_pred             eCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCC--------EEEEEECCCCEEE
Confidence            99 889888887 699999999 455565555322          22378899988732        3677788899999


Q ss_pred             EEeCCCCeEEEEEe--CCCCCEEEEEEcCCCCEEEE-------EeCCCcEEEEeCCCCeEEEEEec----CCCEEEEEEc
Q 008467          476 LWDVELGKLLYSLN--GHREPVYSLAFSPTGEYLAS-------GSLDKSMHIWSLKEGKIVKTYTG----NGGIFEVCWN  542 (564)
Q Consensus       476 iwd~~~~~~~~~~~--~h~~~i~~~~~spdg~~las-------gs~dg~i~iw~~~~~~~~~~~~~----~~~i~~~~w~  542 (564)
                      +||..+++.+..+.  .+...+..++|+| |..+++       .+.+..|++|+..+|+++..+..    ...+.+++++
T Consensus       222 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~  300 (329)
T 3fvz_A          222 CFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVAS  300 (329)
T ss_dssp             EEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEEC
T ss_pred             EEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEEC
Confidence            99999899888874  4556789999999 444433       33456899999999999988842    2348899999


Q ss_pred             cCCCEEEEEEcCCcEEEEEee
Q 008467          543 KEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       543 ~~g~~la~~~~~~~v~v~~~~  563 (564)
                      |+|+.+++...+++|.+|++.
T Consensus       301 ~dG~lyvad~~~~~I~~~~~~  321 (329)
T 3fvz_A          301 EDGTVYIGDAHTNTVWKFTLT  321 (329)
T ss_dssp             TTSEEEEEESSSCCEEEEEEE
T ss_pred             CCCCEEEEECCCCEEEEEeCC
Confidence            999888888889999999874

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.80  E-value=2.6e-16  Score=151.33  Aligned_cols=235  Identities=14%  Similarity=0.262  Sum_probs=176.4

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeec------CCCCCEEEEEe-CCCCCEEEEeeC-CCcEEEEECC
Q 008467          275 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLS------KHKGPIFSLKW-NKKGDYLLTGSC-DKTAIVWDVK  346 (564)
Q Consensus       275 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~------~h~~~V~~l~~-~~~~~~l~s~s~-D~~v~iwd~~  346 (564)
                      ...+.+++++++|+++++...++.|++|+.++.....+.      .|...+.++++ .+++..+++... ++.|.+|| .
T Consensus        29 ~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~  107 (286)
T 1q7f_A           29 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-Q  107 (286)
T ss_dssp             BSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-T
T ss_pred             cCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-C
Confidence            356889999999999998889999999998887665553      24457889999 567766666543 78999998 4


Q ss_pred             CcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEE
Q 008467          347 TEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW  426 (564)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iw  426 (564)
                      ++.....+.                                        ..+...+.+++++|+|+++++.+.++.|.+|
T Consensus       108 ~g~~~~~~~----------------------------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~  147 (286)
T 1q7f_A          108 YGQFVRKFG----------------------------------------ATILQHPRGVTVDNKGRIIVVECKVMRVIIF  147 (286)
T ss_dssp             TSCEEEEEC----------------------------------------TTTCSCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred             CCcEEEEec----------------------------------------CccCCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence            443322210                                        0123456789999999998888889999999


Q ss_pred             eCCCCeeeeecc--cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCC--CCCEEEEEEcC
Q 008467          427 NMKQDKYVHDLR--EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH--REPVYSLAFSP  502 (564)
Q Consensus       427 d~~~~~~~~~~~--~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h--~~~i~~~~~sp  502 (564)
                      |.. ++.+..+.  .+...+..++++|++.         ++++.+.++.|++||.. ++.+..+..+  ...+..|+++|
T Consensus       148 ~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~---------l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~  216 (286)
T 1q7f_A          148 DQN-GNVLHKFGCSKHLEFPNGVVVNDKQE---------IFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINS  216 (286)
T ss_dssp             CTT-SCEEEEEECTTTCSSEEEEEECSSSE---------EEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECT
T ss_pred             cCC-CCEEEEeCCCCccCCcEEEEECCCCC---------EEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECC
Confidence            965 44444443  3445678999998763         56677778999999974 6666666543  35789999999


Q ss_pred             CCCEEEEEeCCC-cEEEEeCCCCeEEEEEecCC---CEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          503 TGEYLASGSLDK-SMHIWSLKEGKIVKTYTGNG---GIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       503 dg~~lasgs~dg-~i~iw~~~~~~~~~~~~~~~---~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      +|+++++...++ .|.+|+. +++.+..+....   .+.+++|+|+|+.+++ ..+++|.||++.
T Consensus       217 ~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~  279 (286)
T 1q7f_A          217 NGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYV  279 (286)
T ss_dssp             TCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECS
T ss_pred             CCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcc
Confidence            999999888886 9999995 567777765432   3789999999987776 578999999874

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.79  E-value=4.5e-16  Score=149.72  Aligned_cols=247  Identities=14%  Similarity=0.237  Sum_probs=177.5

Q ss_pred             CCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEE-CCCCCEEEE
Q 008467          214 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW-NGEGTLLAT  292 (564)
Q Consensus       214 ~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~-s~~g~~l~s  292 (564)
                      +|...+.+++++|++.++++.+.++.|.+|+.. +...          ..+. ..+....+...+..+++ .+++.++++
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~----------~~~~-~~~~~~~~~~~p~~i~~~~~~g~l~v~   94 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFK----------FQFG-ECGKRDSQLLYPNRVAVVRNSGDIIVT   94 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEE----------EEEC-CBSSSTTCBSSEEEEEEETTTTEEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEE----------EEec-ccCCCcccccCceEEEEEcCCCeEEEE
Confidence            455678899999999999998899999999965 2210          0010 01111122346889999 578887777


Q ss_pred             EeC-CCeEEEEECCCceeEeec-CCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCc
Q 008467          293 GSY-DGQARIWSTNGDLKCTLS-KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV  370 (564)
Q Consensus       293 g~~-dg~i~vw~~~~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (564)
                      ... ++.|++|+.++.....+. .+...+.+++++|+|+.+++...++.|.+||.. +.....+.               
T Consensus        95 ~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~---------------  158 (286)
T 1q7f_A           95 ERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFG---------------  158 (286)
T ss_dssp             ECGGGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEE---------------
T ss_pred             cCCCCCEEEEECCCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeC---------------
Confidence            654 899999998887766553 344578999999999988887788999999864 32221110               


Q ss_pred             eEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccc--cccEEEEE
Q 008467          371 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH--SKEIYTIR  448 (564)
Q Consensus       371 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~--~~~i~~i~  448 (564)
                                              ..++...+.+++++++|+++++.+.++.|++||.. +..+..+..+  ...+..++
T Consensus       159 ------------------------~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~  213 (286)
T 1q7f_A          159 ------------------------CSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVG  213 (286)
T ss_dssp             ------------------------CTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEE
T ss_pred             ------------------------CCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEE
Confidence                                    01233457889999999988888889999999975 4455555433  35678999


Q ss_pred             EccCCCCCCCCCCcEEEEEEeCCC-eEEEEeCCCCeEEEEEeCCC--CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 008467          449 WSPTGSGTNNPNQQLILASASFDS-TVKLWDVELGKLLYSLNGHR--EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG  524 (564)
Q Consensus       449 ~~p~~~~~~~~~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~h~--~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~  524 (564)
                      ++|++.         ++++...++ .|++||.. ++.+..+..+.  ..+.+++++|+|+++++ +.|++|++|++...
T Consensus       214 ~d~~G~---------l~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          214 INSNGE---------ILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             ECTTCC---------EEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             ECCCCC---------EEEEeCCCCEEEEEECCC-CCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence            998874         566666675 99999964 67666665443  24789999999987777 67999999998653

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.78  E-value=1.1e-16  Score=157.40  Aligned_cols=248  Identities=12%  Similarity=0.183  Sum_probs=182.2

Q ss_pred             cceEEEEECCCCCEEEEEECC------------------------CcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccc
Q 008467          217 SEVCACAWSPAGSLLASGSGD------------------------STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTN  272 (564)
Q Consensus       217 ~~V~~~~~sp~~~~lasgs~D------------------------~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (564)
                      +.|.+++++|+|+++++.+.+                        +.|.+||..++...             ... +  .
T Consensus        24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~-------------~~~-~--~   87 (329)
T 3fvz_A           24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEIL-------------QSS-G--K   87 (329)
T ss_dssp             SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEE-------------EEE-C--T
T ss_pred             CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEE-------------ecc-C--C
Confidence            568999999999999998887                        46888887655321             111 0  1


Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCc--eeEee---------cCCCCCEEEEEeCC-CCCEEEEee-CCCc
Q 008467          273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD--LKCTL---------SKHKGPIFSLKWNK-KGDYLLTGS-CDKT  339 (564)
Q Consensus       273 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~--~~~~~---------~~h~~~V~~l~~~~-~~~~l~s~s-~D~~  339 (564)
                      ........++++++|+++++...++.|++|+.++.  ....+         ..+-....+++++| ++..+++.+ .++.
T Consensus        88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~  167 (329)
T 3fvz_A           88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR  167 (329)
T ss_dssp             TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred             CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence            22346889999999999999888999999998876  44444         24445689999999 788778876 6899


Q ss_pred             EEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC-CCEEEEEe
Q 008467          340 AIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCS  418 (564)
Q Consensus       340 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~-~~~las~s  418 (564)
                      |++|| ..+.....+.....                   +         ..   ...++-.....++++|+ +.++++..
T Consensus       168 I~~~~-~~g~~~~~~~~~g~-------------------~---------~~---~~~~~~~~p~gia~d~~~g~l~v~d~  215 (329)
T 3fvz_A          168 IVQFS-PSGKFVTQWGEESS-------------------G---------SS---PRPGQFSVPHSLALVPHLDQLCVADR  215 (329)
T ss_dssp             EEEEC-TTSCEEEEECEECC-------------------S---------SS---CCTTEESCEEEEEEETTTTEEEEEET
T ss_pred             EEEEc-CCCCEEEEeccCCC-------------------C---------CC---CCCcccCCCcEEEEECCCCEEEEEEC
Confidence            99999 44544433321100                   0         00   00112234678999998 78888888


Q ss_pred             CCCcEEEEeCCCCeeeeecc--cccccEEEEEEccCCCCCCCCCCcEEEEE-------EeCCCeEEEEeCCCCeEEEEEe
Q 008467          419 DDVTAKIWNMKQDKYVHDLR--EHSKEIYTIRWSPTGSGTNNPNQQLILAS-------ASFDSTVKLWDVELGKLLYSLN  489 (564)
Q Consensus       419 ~dg~i~iwd~~~~~~~~~~~--~~~~~i~~i~~~p~~~~~~~~~~~~~l~s-------~s~dg~i~iwd~~~~~~~~~~~  489 (564)
                      .++.|++|+..+++.+..+.  .+...++.++++| +.         ++++       .+.+..|++||..+++.+..+.
T Consensus       216 ~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~---------~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~  285 (329)
T 3fvz_A          216 ENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GF---------LFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFK  285 (329)
T ss_dssp             TTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TE---------EEEEECCCCTTCSCCCCEEEEETTTCCEEEEEC
T ss_pred             CCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CE---------EEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEc
Confidence            89999999998888877763  4566788999998 31         2222       2334589999999999988873


Q ss_pred             ---CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 008467          490 ---GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK  522 (564)
Q Consensus       490 ---~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~  522 (564)
                         ++...+..|+++|+|.++++...+++|++|++.
T Consensus       286 ~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~  321 (329)
T 3fvz_A          286 PVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT  321 (329)
T ss_dssp             CSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred             CCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence               566778999999999888888899999999975

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.76  E-value=5.1e-17  Score=163.82  Aligned_cols=276  Identities=10%  Similarity=-0.021  Sum_probs=174.9

Q ss_pred             eEEEEECCCCCEEEEEECC---CcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeC
Q 008467          219 VCACAWSPAGSLLASGSGD---STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY  295 (564)
Q Consensus       219 V~~~~~sp~~~~lasgs~D---~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~  295 (564)
                      +..++|||+|++||..+.+   ..+.+|++.++...              ....   ........+.|+|||+.|+.++.
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~--------------~l~~---~~~~~~~~~~~spdg~~l~~~~~  100 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV--------------QLTE---GKGDNTFGGFISTDERAFFYVKN  100 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE--------------ECCC---SSCBCTTTCEECTTSSEEEEEET
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE--------------Eeec---CCCCccccceECCCCCEEEEEEc
Confidence            6778999999998877543   36778887654310              1100   01111223689999999999999


Q ss_pred             CCeEEEEECCCce-eEeecCCCCCEEE-------------------EEeCCCCCEEEEe-----eCCCcEEEEECCCcce
Q 008467          296 DGQARIWSTNGDL-KCTLSKHKGPIFS-------------------LKWNKKGDYLLTG-----SCDKTAIVWDVKTEEW  350 (564)
Q Consensus       296 dg~i~vw~~~~~~-~~~~~~h~~~V~~-------------------l~~~~~~~~l~s~-----s~D~~v~iwd~~~~~~  350 (564)
                      ++.|++|+..+.. ......+......                   +.|+|+++.++.+     ..+..|.+||+.+++.
T Consensus       101 ~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~  180 (396)
T 3c5m_A          101 ELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGEL  180 (396)
T ss_dssp             TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCE
T ss_pred             CCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcE
Confidence            9999999987543 3333333332222                   3567777766544     3567899999998876


Q ss_pred             eEEEeecccCeEEEEcCC-C-ceEEEEeCC------CeEEEEEcCCCceeeEecCC-CcceEEEEECCCCCEEEEEeCC-
Q 008467          351 KQQFEFHSGPTLDVDWRN-N-VSFATSSTD------NMIYVCKIGENRPIKTFAGH-QGEVNCVKWDPTGSLLASCSDD-  420 (564)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~-~-~~~~~~~~d------~~i~~~~~~~~~~~~~~~~h-~~~i~~v~~~~~~~~las~s~d-  420 (564)
                      .... .+...+..+.|.+ + ..++..+.+      ..|++++............. ...+..++|+|+|+.|+.++.+ 
T Consensus       181 ~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~  259 (396)
T 3c5m_A          181 EVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFK  259 (396)
T ss_dssp             EEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred             Eeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCC
Confidence            5544 3445566777866 3 334443332      46888888665433322221 2357889999999987777654 


Q ss_pred             ----CcEEEEeCCCCeeeeecccccccEEEEEEcc-CCCCCCCCCCcEEEEEEe----------------CCCeEEEEeC
Q 008467          421 ----VTAKIWNMKQDKYVHDLREHSKEIYTIRWSP-TGSGTNNPNQQLILASAS----------------FDSTVKLWDV  479 (564)
Q Consensus       421 ----g~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p-~~~~~~~~~~~~~l~s~s----------------~dg~i~iwd~  479 (564)
                          +.|.+||+.+++.... ..... .. +.|+| ++.         ++++++                .++.|++||+
T Consensus       260 ~~~~~~l~~~d~~~g~~~~l-~~~~~-~~-~~~s~~dg~---------~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~  327 (396)
T 3c5m_A          260 GQTDRVIYKANPETLENEEV-MVMPP-CS-HLMSNFDGS---------LMVGDGCDAPVDVADADSYNIENDPFLYVLNT  327 (396)
T ss_dssp             TTCCEEEEEECTTTCCEEEE-EECCS-EE-EEEECSSSS---------EEEEEECCC----------CCCCCCEEEEEET
T ss_pred             CCccceEEEEECCCCCeEEe-eeCCC-CC-CCccCCCCc---------eEEEecCCcceeeccccccccCCCCcEEEEec
Confidence                4599999987764332 11111 23 88998 774         444443                3478999999


Q ss_pred             CCCeEEEEEeCCCC-----------CEEEEEEcCCCCEEEEEeC-CCc--EEEEeCCCCe
Q 008467          480 ELGKLLYSLNGHRE-----------PVYSLAFSPTGEYLASGSL-DKS--MHIWSLKEGK  525 (564)
Q Consensus       480 ~~~~~~~~~~~h~~-----------~i~~~~~spdg~~lasgs~-dg~--i~iw~~~~~~  525 (564)
                      .+++.. .+..+..           .+..++|+|||++|+.++. ++.  |.++++.++.
T Consensus       328 ~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~  386 (396)
T 3c5m_A          328 KAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESY  386 (396)
T ss_dssp             TTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTC
T ss_pred             ccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccc
Confidence            887643 3444443           2567899999999887765 454  4444555543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.76  E-value=5.6e-16  Score=152.56  Aligned_cols=267  Identities=11%  Similarity=0.101  Sum_probs=191.2

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEe
Q 008467          276 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE  355 (564)
Q Consensus       276 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~  355 (564)
                      ..|.+++|++++..+++.+.++.++.|  .+.....+..+...+.+++|+++|+.++++..++.|.+||+.++++.....
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~   83 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTI--TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV   83 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEE--ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE
T ss_pred             cccceeeecCCccceeEEeecccCccc--ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEee
Confidence            447778899988888777888899999  344555666677778999999999987888889999999998887665443


Q ss_pred             ecccCeEEEEcCCCc-eEEEEeCC----CeEEEEEcCCCceeeEec--CCCcceEEEEECCCCCEEEEEeC------CCc
Q 008467          356 FHSGPTLDVDWRNNV-SFATSSTD----NMIYVCKIGENRPIKTFA--GHQGEVNCVKWDPTGSLLASCSD------DVT  422 (564)
Q Consensus       356 ~~~~~~~~~~~~~~~-~~~~~~~d----~~i~~~~~~~~~~~~~~~--~h~~~i~~v~~~~~~~~las~s~------dg~  422 (564)
                      .+...+..+.+..+. .+++...+    +.|++|+.........+.  .+...+++++++|+|+++++...      .+.
T Consensus        84 ~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~  163 (333)
T 2dg1_A           84 SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGG  163 (333)
T ss_dssp             CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEE
T ss_pred             CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCce
Confidence            445567788886554 44555455    589999887665443332  24457899999999998887664      345


Q ss_pred             EEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-CeEEE--------EEeCCCC
Q 008467          423 AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-GKLLY--------SLNGHRE  493 (564)
Q Consensus       423 i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~--------~~~~h~~  493 (564)
                      |..|+..+++.. .+......+..++|+|++.        .++++.+.++.|.+||+.. +..+.        .+.++ .
T Consensus       164 l~~~~~~~~~~~-~~~~~~~~~~~i~~~~dg~--------~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~  233 (333)
T 2dg1_A          164 VYYVSPDFRTVT-PIIQNISVANGIALSTDEK--------VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-E  233 (333)
T ss_dssp             EEEECTTSCCEE-EEEEEESSEEEEEECTTSS--------EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-S
T ss_pred             EEEEeCCCCEEE-EeecCCCcccceEECCCCC--------EEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-C
Confidence            666665554432 2223334578899999874        2445566688999999863 33221        12222 3


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCC-------CEEEEEEccCCCEEEEEEcCC
Q 008467          494 PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-------GIFEVCWNKEGDKIAACFANH  555 (564)
Q Consensus       494 ~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~-------~i~~~~w~~~g~~la~~~~~~  555 (564)
                      .+..++++++|+++++...++.|.+|+. +++.+..+....       .+.+++|++||+.|.++..++
T Consensus       234 ~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          234 GPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             EEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             CCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence            5788999999999888888899999998 577777775432       478999999998887776653

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.75  E-value=7.2e-16  Score=152.63  Aligned_cols=256  Identities=11%  Similarity=0.124  Sum_probs=176.3

Q ss_pred             CCeEEEEECCCCCEEEEEe---------CCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCC---C--cEE
Q 008467          276 KDVTTLDWNGEGTLLATGS---------YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD---K--TAI  341 (564)
Q Consensus       276 ~~V~~l~~s~~g~~l~sg~---------~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D---~--~v~  341 (564)
                      ..+..+.+  ||+.++...         .++.|.+|+..+.....+    ..+..++|+|+|++|+.++.+   +  .|.
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~   88 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIW   88 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence            34667777  888887642         256889999876544444    567889999999999887754   3  378


Q ss_pred             EEECCCcceeEEEeecccCeEEEEcCCC-ceEEEEeC---------------------------CCeEEEEEcCCCceee
Q 008467          342 VWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSST---------------------------DNMIYVCKIGENRPIK  393 (564)
Q Consensus       342 iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---------------------------d~~i~~~~~~~~~~~~  393 (564)
                      +||+.+++.........  +..+.|.++ ..++.++.                           ...|++|++..+..+.
T Consensus        89 ~~~~~~g~~~~l~~~~~--~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~  166 (347)
T 2gop_A           89 VADLETLSSKKILEAKN--IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIE  166 (347)
T ss_dssp             EEETTTTEEEEEEEESE--EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEE
T ss_pred             EEECCCCceEEEEcCCC--ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEe
Confidence            88888877665544433  778889754 44554442                           2568899998777645


Q ss_pred             EecCCCcceEEEEECCCCCEEEEEeCCC-------cEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEE
Q 008467          394 TFAGHQGEVNCVKWDPTGSLLASCSDDV-------TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILA  466 (564)
Q Consensus       394 ~~~~h~~~i~~v~~~~~~~~las~s~dg-------~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~  466 (564)
                      .+.. . .+..++|+|+| ++++++.+.       ...||.+.+++ ...+..+ ..+..+  +|+|.         .|+
T Consensus       167 ~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~-~~~~~~--spdg~---------~l~  230 (347)
T 2gop_A          167 EFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK-VSFYAV--DSDGE---------RIL  230 (347)
T ss_dssp             EEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE-ESEEEE--EECSS---------CEE
T ss_pred             eecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc-eEEeccC-cceeeE--CCCCC---------EEE
Confidence            5544 3 78899999999 888776652       44555544443 3344444 445444  78775         344


Q ss_pred             EEeCC--------CeEEEEeCCCCeEEEEEeCCCCCEEE-EEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEE
Q 008467          467 SASFD--------STVKLWDVELGKLLYSLNGHREPVYS-LAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIF  537 (564)
Q Consensus       467 s~s~d--------g~i~iwd~~~~~~~~~~~~h~~~i~~-~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~  537 (564)
                      .++.+        ..|.+||  +++......++...+.. +.|+ || ++++++.++.++|| +.+++......+.+.+.
T Consensus       231 ~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~  305 (347)
T 2gop_A          231 LYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIM  305 (347)
T ss_dssp             EEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEE
T ss_pred             EEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEE
Confidence            44433        4788888  56654444456677886 9999 99 99999999999999 87777766666666789


Q ss_pred             EEEEccCCCEEEEEEcCCcE-EEEEe
Q 008467          538 EVCWNKEGDKIAACFANHTV-CVLDF  562 (564)
Q Consensus       538 ~~~w~~~g~~la~~~~~~~v-~v~~~  562 (564)
                      +++|+|  ..++++..++.. .||.+
T Consensus       306 ~~~~s~--~~~~~~~~~~~~~~l~~~  329 (347)
T 2gop_A          306 GFDVDE--IVVYLKETATRLRELFTW  329 (347)
T ss_dssp             EEEESS--SEEEEEECSSSCCEEEEE
T ss_pred             eeeeeC--cEEEEEcCCCChHHheEe
Confidence            999999  666666666554 66654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.75  E-value=8.2e-17  Score=176.26  Aligned_cols=310  Identities=11%  Similarity=0.108  Sum_probs=188.6

Q ss_pred             eEccCCccc-----eEEEEECCCCCEEEEEECC---------CcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCC
Q 008467          210 TILEGHTSE-----VCACAWSPAGSLLASGSGD---------STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKS  275 (564)
Q Consensus       210 ~~l~~h~~~-----V~~~~~sp~~~~lasgs~D---------~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (564)
                      .++.+|...     ....+|||||++|+.++.+         +.+.+||+.++....                  ...+.
T Consensus        50 ~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~------------------l~~~~  111 (740)
T 4a5s_A           50 VFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT------------------EERIP  111 (740)
T ss_dssp             EEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC------------------SSCCC
T ss_pred             EEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE------------------cccCC
Confidence            445566533     2347899999999998876         556799998764211                  11223


Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEe--ecCCCCCE-----------------EEEEeCCCCCEEEEeeC
Q 008467          276 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCT--LSKHKGPI-----------------FSLKWNKKGDYLLTGSC  336 (564)
Q Consensus       276 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~--~~~h~~~V-----------------~~l~~~~~~~~l~s~s~  336 (564)
                      ..+...+|||||+.||.+. ++.|++|+..+.....  ..++...+                 .++.|||||++|+.++.
T Consensus       112 ~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~  190 (740)
T 4a5s_A          112 NNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQF  190 (740)
T ss_dssp             TTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEE
T ss_pred             CcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEE
Confidence            5689999999999999884 6899999976543332  23333333                 24899999999999887


Q ss_pred             CCc-EEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCC---Cc--eeeEec------CCCcceEE
Q 008467          337 DKT-AIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE---NR--PIKTFA------GHQGEVNC  404 (564)
Q Consensus       337 D~~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~---~~--~~~~~~------~h~~~i~~  404 (564)
                      |.+ +.+|++.......   .+......+.+.....   ......|++|++.+   +.  ....+.      +|...+..
T Consensus       191 d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G~---~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  264 (740)
T 4a5s_A          191 NDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAGA---VNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCD  264 (740)
T ss_dssp             ECTTCCEEEEEECCSTT---CSSCEEEEEECCBTTS---CCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEE
T ss_pred             cccCCceEEEEeecCCC---CCCCcceeecCCCCcC---cCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEE
Confidence            765 8888763211000   0011112222211100   01123688999987   62  222333      48888999


Q ss_pred             EEECCCCCEEEEEeC----CCcEEEEeCCCCe----eee--ec--ccccccEE-----EEEEccCCCCCCCCCCcEEEEE
Q 008467          405 VKWDPTGSLLASCSD----DVTAKIWNMKQDK----YVH--DL--REHSKEIY-----TIRWSPTGSGTNNPNQQLILAS  467 (564)
Q Consensus       405 v~~~~~~~~las~s~----dg~i~iwd~~~~~----~~~--~~--~~~~~~i~-----~i~~~p~~~~~~~~~~~~~l~s  467 (564)
                      ++|+|||++++....    +..|++||+.+++    +..  .+  ..|...+.     ...|+|+|.        .++..
T Consensus       265 ~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~--------~l~~~  336 (740)
T 4a5s_A          265 VTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGN--------SFYKI  336 (740)
T ss_dssp             EEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSS--------EEEEE
T ss_pred             EEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCC--------EEEEE
Confidence            999999997665533    3479999998876    221  11  23444333     678999875        23324


Q ss_pred             Ee-CC--CeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEE-EEeC----CCcEEEE--eCCCCeEEEEEec-----
Q 008467          468 AS-FD--STVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLA-SGSL----DKSMHIW--SLKEGKIVKTYTG-----  532 (564)
Q Consensus       468 ~s-~d--g~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~la-sgs~----dg~i~iw--~~~~~~~~~~~~~-----  532 (564)
                      .+ .+  ..|.+||+..++.. .+......|..+.. +|++.|+ +++.    .+...||  ++..+.....++.     
T Consensus       337 ~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~  414 (740)
T 4a5s_A          337 ISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPE  414 (740)
T ss_dssp             EECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTT
T ss_pred             EEcCCCceEEEEEECCCCceE-ecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCC
Confidence            44 34  46888898866544 44444555666542 4466554 4444    2344454  4444333223332     


Q ss_pred             CCCEEEEEEccCCCEEEEEEcC
Q 008467          533 NGGIFEVCWNKEGDKIAACFAN  554 (564)
Q Consensus       533 ~~~i~~~~w~~~g~~la~~~~~  554 (564)
                      ......++|+|+|++++..+.+
T Consensus       415 ~~~~~~~~~S~dg~~~~~~~s~  436 (740)
T 4a5s_A          415 RCQYYSVSFSKEAKYYQLRCSG  436 (740)
T ss_dssp             TBCBEEEEECTTSSEEEEEECS
T ss_pred             CCceEEEEECCCCCEEEEEeCC
Confidence            2467899999999988877654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.75  E-value=1.7e-15  Score=149.89  Aligned_cols=258  Identities=14%  Similarity=0.148  Sum_probs=173.9

Q ss_pred             ceEEEEECCCCCEEEEEE---------CCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467          218 EVCACAWSPAGSLLASGS---------GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  288 (564)
Q Consensus       218 ~V~~~~~sp~~~~lasgs---------~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  288 (564)
                      .+...+|  +|+.+|...         .++.|.+|++.++..              ...        ..+..++|||||+
T Consensus        16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~--------------~~l--------~~~~~~~~SpDg~   71 (347)
T 2gop_A           16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNAR--------------RFI--------ENATMPRISPDGK   71 (347)
T ss_dssp             EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE--------------EEE--------ESCEEEEECTTSS
T ss_pred             EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCce--------------EEc--------ccCCCeEECCCCC
Confidence            3566677  888777642         256788999876431              011        2478899999999


Q ss_pred             EEEEEeCC---C--eEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCC--------------------------
Q 008467          289 LLATGSYD---G--QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD--------------------------  337 (564)
Q Consensus       289 ~l~sg~~d---g--~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D--------------------------  337 (564)
                      .|+.++.+   +  .|.+|+..+.....+..+.. +.++.|+|+|+.|+.++.+                          
T Consensus        72 ~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  150 (347)
T 2gop_A           72 KIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGE  150 (347)
T ss_dssp             EEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------C
T ss_pred             EEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCc
Confidence            99987754   3  37777876554444433344 9999999999999887643                          


Q ss_pred             -CcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCC---------CeEEEEEcCCCceeeEecCCCcceEEEEE
Q 008467          338 -KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTD---------NMIYVCKIGENRPIKTFAGHQGEVNCVKW  407 (564)
Q Consensus       338 -~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---------~~i~~~~~~~~~~~~~~~~h~~~i~~v~~  407 (564)
                       ..|.+||+.+++.+..+.. . .+..+.|.++..++++..+         ..|++++  .+. ...+..+ ..+..+  
T Consensus       151 ~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d--~~~-~~~l~~~-~~~~~~--  222 (347)
T 2gop_A          151 KTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE--DGK-EEKMFEK-VSFYAV--  222 (347)
T ss_dssp             EEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE--TTE-EEEEEEE-ESEEEE--
T ss_pred             cceEEEEECCCCeEEeeecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeC--CCc-eEEeccC-cceeeE--
Confidence             5789999998877444444 3 6667788776633344332         2455555  333 3344444 555544  


Q ss_pred             CCCCCEEEEEeCCC--------cEEEEeCCCCeeeeecccccccEEE-EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEe
Q 008467          408 DPTGSLLASCSDDV--------TAKIWNMKQDKYVHDLREHSKEIYT-IRWSPTGSGTNNPNQQLILASASFDSTVKLWD  478 (564)
Q Consensus       408 ~~~~~~las~s~dg--------~i~iwd~~~~~~~~~~~~~~~~i~~-i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd  478 (564)
                      +|+|+.|+.++.++        .|.+||  +++.......+...+.. +.|+ ++          ++++++.++.++|| 
T Consensus       223 spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg----------~~~~~~~~~~~~l~-  288 (347)
T 2gop_A          223 DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK----------VYFTLFEEGSVNLY-  288 (347)
T ss_dssp             EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE----------EEEEEEETTEEEEE-
T ss_pred             CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc----------EEEEEecCCcEEEE-
Confidence            99999988877543        677787  55544444455677776 8887 53          57788899999999 


Q ss_pred             CCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcE-EEEeCCCCeE
Q 008467          479 VELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSM-HIWSLKEGKI  526 (564)
Q Consensus       479 ~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i-~iw~~~~~~~  526 (564)
                      +.+++.. .+..+...|.+++|+|  .++++++.++.. .||.+. ++.
T Consensus       289 ~~~g~~~-~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~~  333 (347)
T 2gop_A          289 IWDGEIK-PIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GEE  333 (347)
T ss_dssp             EESSSEE-EEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SSE
T ss_pred             EcCCceE-EEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-CcE
Confidence            8766654 4444577899999999  677777777654 677665 553

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.74  E-value=1.6e-14  Score=151.18  Aligned_cols=310  Identities=14%  Similarity=0.091  Sum_probs=210.3

Q ss_pred             CCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEC-
Q 008467          226 PAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST-  304 (564)
Q Consensus       226 p~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~-  304 (564)
                      |.+.++++...++.+.++|..+++..             ....     ....+..+.|||||+++++++.|+.|.+||. 
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~-------------~~i~-----~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~  226 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIK-------------TVLD-----TGYAVHISRLSASGRYLFVIGRDGKVNMIDLW  226 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEE-------------EEEE-----CSSCEEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEE-------------EEEe-----CCCCccceEECCCCCEEEEEcCCCeEEEEECC
Confidence            44557777888999999998776421             1111     1234678999999999999999999999998 


Q ss_pred             --CCceeEeecCCCCCEEEEEeC----CCCCEEEEee-CCCcEEEEECCCcceeEEEeecc----------c-CeEEEEc
Q 008467          305 --NGDLKCTLSKHKGPIFSLKWN----KKGDYLLTGS-CDKTAIVWDVKTEEWKQQFEFHS----------G-PTLDVDW  366 (564)
Q Consensus       305 --~~~~~~~~~~h~~~V~~l~~~----~~~~~l~s~s-~D~~v~iwd~~~~~~~~~~~~~~----------~-~~~~~~~  366 (564)
                        .+.....+..... ...++|+    |+|+++++++ .+++|.++|..+.+.+..+....          . .+..+..
T Consensus       227 ~~t~~~v~~i~~G~~-P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~  305 (567)
T 1qks_A          227 MKEPTTVAEIKIGSE-ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILA  305 (567)
T ss_dssp             SSSCCEEEEEECCSE-EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEE
T ss_pred             CCCCcEeEEEecCCC-CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEE
Confidence              4455555554333 4789999    6999887665 45899999999988887765322          1 1222222


Q ss_pred             C--CCceEEEEeCCCeEEEEEcCCCceeeEe-cCCCcceEEEEECCCCCEEEEEe-CCCcEEEEeCCCCeeeeeccc---
Q 008467          367 R--NNVSFATSSTDNMIYVCKIGENRPIKTF-AGHQGEVNCVKWDPTGSLLASCS-DDVTAKIWNMKQDKYVHDLRE---  439 (564)
Q Consensus       367 ~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~-~~h~~~i~~v~~~~~~~~las~s-~dg~i~iwd~~~~~~~~~~~~---  439 (564)
                      .  ....++.....+.|.+++.......... .........+.|+|+|++++++. .+++|.++|+.+++.+..+..   
T Consensus       306 s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~  385 (567)
T 1qks_A          306 SHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQ  385 (567)
T ss_dssp             CSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS
T ss_pred             cCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCc
Confidence            2  2233445566788888887654322211 12233466789999999876655 578999999999987655432   


Q ss_pred             --ccccEEEEEEccCCCCCCCCCCcEEEEEEe-CCCeEEEEeCCC-------CeEEEEEeCCCCCEEEEEEcCCCCEEEE
Q 008467          440 --HSKEIYTIRWSPTGSGTNNPNQQLILASAS-FDSTVKLWDVEL-------GKLLYSLNGHREPVYSLAFSPTGEYLAS  509 (564)
Q Consensus       440 --~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~-------~~~~~~~~~h~~~i~~~~~spdg~~las  509 (564)
                        |.+.-..+ +.|++.        .+.+++. .+++|.++|...       .+.+.++......-..|.++|++++|.+
T Consensus       386 ~Phpg~g~~~-~~p~~g--------~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v  456 (567)
T 1qks_A          386 TPHPGRGANF-VHPTFG--------PVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYV  456 (567)
T ss_dssp             SBCCTTCEEE-EETTTE--------EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEE
T ss_pred             CCCCccceee-ECCCCC--------cEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEE
Confidence              32211111 345432        2455554 568999999987       6778888765444456789999999987


Q ss_pred             EeC-------CCcEEEEeCCCC-----e-EEEEEe---------cCCCEEEEEEccCCCEEEEEEc-----CCcEEEEEe
Q 008467          510 GSL-------DKSMHIWSLKEG-----K-IVKTYT---------GNGGIFEVCWNKEGDKIAACFA-----NHTVCVLDF  562 (564)
Q Consensus       510 gs~-------dg~i~iw~~~~~-----~-~~~~~~---------~~~~i~~~~w~~~g~~la~~~~-----~~~v~v~~~  562 (564)
                      ...       .++|.++|+.+.     . ......         +...+..+.|+++|+.+.++..     ++.|.|+|-
T Consensus       457 ~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~  536 (567)
T 1qks_A          457 DATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDD  536 (567)
T ss_dssp             ECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEET
T ss_pred             ecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEEC
Confidence            663       358999999876     2 113332         1345889999999998887743     578999985


Q ss_pred             e
Q 008467          563 R  563 (564)
Q Consensus       563 ~  563 (564)
                      +
T Consensus       537 ~  537 (567)
T 1qks_A          537 K  537 (567)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.73  E-value=1.5e-15  Score=146.89  Aligned_cols=233  Identities=13%  Similarity=0.116  Sum_probs=169.5

Q ss_pred             CCeEEEEECCCCC-EEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEE
Q 008467          276 KDVTTLDWNGEGT-LLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF  354 (564)
Q Consensus       276 ~~V~~l~~s~~g~-~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  354 (564)
                      ....+++|+|+|+ +++++..++.|..|+..+. ...+..+...+.+++++++|+.+++...++.|.+||..++++....
T Consensus        28 ~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~  106 (296)
T 3e5z_A           28 TWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIA  106 (296)
T ss_dssp             SSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEE
T ss_pred             ccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEe
Confidence            3467899999998 7888889999999999877 6667777888999999999998887777889999998777643221


Q ss_pred             eecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC---------------
Q 008467          355 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD---------------  419 (564)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~---------------  419 (564)
                      ....                              .       .....++.++++|+|+++++.+.               
T Consensus       107 ~~~~------------------------------~-------~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~  149 (296)
T 3e5z_A          107 DSFE------------------------------G-------KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEME  149 (296)
T ss_dssp             CEET------------------------------T-------EECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCC
T ss_pred             eccC------------------------------C-------CCCCCCCCEEECCCCCEEEECCcccccccccccccccc
Confidence            1000                              0       01124567899999999887321               


Q ss_pred             --CCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC-CCeE---EEEEeCCCC
Q 008467          420 --DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE-LGKL---LYSLNGHRE  493 (564)
Q Consensus       420 --dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~---~~~~~~h~~  493 (564)
                        .+.|..++.. + .+..+..+......++|+|++.         +|++.+.++.|.+|++. .++.   ...+..+..
T Consensus       150 ~~~~~l~~~~~~-g-~~~~~~~~~~~~~gi~~s~dg~---------~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~  218 (296)
T 3e5z_A          150 LPGRWVFRLAPD-G-TLSAPIRDRVKPNGLAFLPSGN---------LLVSDTGDNATHRYCLNARGETEYQGVHFTVEPG  218 (296)
T ss_dssp             SSSCEEEEECTT-S-CEEEEECCCSSEEEEEECTTSC---------EEEEETTTTEEEEEEECSSSCEEEEEEEECCSSS
T ss_pred             CCCcEEEEECCC-C-CEEEeecCCCCCccEEECCCCC---------EEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCC
Confidence              2345555544 3 3334445556678999999875         44777888999999986 5554   233333445


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEE-ccCCCEEEEEEcCCcEEEEE
Q 008467          494 PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCW-NKEGDKIAACFANHTVCVLD  561 (564)
Q Consensus       494 ~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w-~~~g~~la~~~~~~~v~v~~  561 (564)
                      .+..++++++|+++++.  ++.|.+|+.. |+.+..+.....+.+++| +++++.|.++..++ +.-++
T Consensus       219 ~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~~~~~~f~~~d~~~L~v~t~~~-l~~~~  283 (296)
T 3e5z_A          219 KTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQTTSNLCFGGPEGRTLYMTVSTE-FWSIE  283 (296)
T ss_dssp             CCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSCCCEEEEESTTSCEEEEEETTE-EEEEE
T ss_pred             CCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCCceeEEEECCCCCEEEEEcCCe-EEEEE
Confidence            56789999999977766  7889999986 777777776555889999 68999999987764 43333

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.70  E-value=1e-15  Score=165.53  Aligned_cols=236  Identities=11%  Similarity=0.035  Sum_probs=167.5

Q ss_pred             CCCCeEEEEECCCCCEEEEE--eCCCeEEEEE-CCCceeEeecCCCCCEE---------EEEeC--CCCCE-EEEeeC-C
Q 008467          274 KSKDVTTLDWNGEGTLLATG--SYDGQARIWS-TNGDLKCTLSKHKGPIF---------SLKWN--KKGDY-LLTGSC-D  337 (564)
Q Consensus       274 ~~~~V~~l~~s~~g~~l~sg--~~dg~i~vw~-~~~~~~~~~~~h~~~V~---------~l~~~--~~~~~-l~s~s~-D  337 (564)
                      +...|..++|++++.++++.  +.++...||. ..+.....+..|...+.         ...|+  |+|++ |+.++. +
T Consensus        22 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~  101 (662)
T 3azo_A           22 RSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGD  101 (662)
T ss_dssp             TCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTT
T ss_pred             cCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCC
Confidence            45679999999987777777  5688899998 34444556666666655         55565  99988 665443 4


Q ss_pred             CcEEEEECC--C-cceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecC-----CCcceEEEEECC
Q 008467          338 KTAIVWDVK--T-EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG-----HQGEVNCVKWDP  409 (564)
Q Consensus       338 ~~v~iwd~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-----h~~~i~~v~~~~  409 (564)
                      ..|.+|++.  + +..                                          ..+..     |...+.+++|+|
T Consensus       102 ~~l~~~~~~~~g~~~~------------------------------------------~~l~~~~~~~~~~~~~~~~~sp  139 (662)
T 3azo_A          102 QRLYAFEPDAPGGAVP------------------------------------------RPLTPVSAVGGGLRWADPVLLP  139 (662)
T ss_dssp             CCEEEECTTSTTCCCC------------------------------------------EECSCCCCSTTCEEEEEEEEET
T ss_pred             CeEEEEcCCCCCCCCC------------------------------------------EeccCCccCCCCccccCcEECC
Confidence            455555543  1 221                                          11222     556788999999


Q ss_pred             CCCEEEEEeCC----------CcEEEEeCCC------Ceeeeecc-cccccEEEEEEccCCCCCCCCCCcEEEEEEeCC-
Q 008467          410 TGSLLASCSDD----------VTAKIWNMKQ------DKYVHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-  471 (564)
Q Consensus       410 ~~~~las~s~d----------g~i~iwd~~~------~~~~~~~~-~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d-  471 (564)
                      ||+.|++++.|          ..|.+||+.+      +.. ..+. .+...+..+.|+|+|.         .|+.++.+ 
T Consensus       140 Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~---------~la~~~~~~  209 (662)
T 3azo_A          140 ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGR---------QAVWLAWDH  209 (662)
T ss_dssp             TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSS---------EEEEEEECT
T ss_pred             CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCC---------EEEEEECCC
Confidence            99999998877          5899999987      443 4455 5566778899999986         56655544 


Q ss_pred             -------CeEEEEeCC-CC---eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCeEEEEEecCCC---
Q 008467          472 -------STVKLWDVE-LG---KLLYSLNGHREPVYSLAFSPTGEYLASGSLDK--SMHIWSLKEGKIVKTYTGNGG---  535 (564)
Q Consensus       472 -------g~i~iwd~~-~~---~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg--~i~iw~~~~~~~~~~~~~~~~---  535 (564)
                             ..|++||+. ++   +......+|...+..++|||||+++++++.++  .|.+|++.+++..........   
T Consensus       210 ~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~  289 (662)
T 3azo_A          210 PRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAG  289 (662)
T ss_dssp             TCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSC
T ss_pred             CCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccC
Confidence                   479999998 57   44444445567899999999999888888888  677777767765544333221   


Q ss_pred             ------EEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467          536 ------IFEVCWNKEGDKIAACFANHTVCVLDF  562 (564)
Q Consensus       536 ------i~~~~w~~~g~~la~~~~~~~v~v~~~  562 (564)
                            +..++|+++|+.++++.. +.+.||.+
T Consensus       290 p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~  321 (662)
T 3azo_A          290 PLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL  321 (662)
T ss_dssp             CCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred             ccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence                  457889999999999888 88888844

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.70  E-value=7.9e-15  Score=159.81  Aligned_cols=252  Identities=11%  Similarity=0.128  Sum_probs=164.4

Q ss_pred             CeEEEEECCCCCEEEEEeCCC-----eEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCccee
Q 008467          277 DVTTLDWNGEGTLLATGSYDG-----QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK  351 (564)
Q Consensus       277 ~V~~l~~s~~g~~l~sg~~dg-----~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~  351 (564)
                      .+..++|||||++|+.+..++     .|++|+..+............+.+++|+|+|+.|+.++.++.       .... 
T Consensus       126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~-------~~~~-  197 (710)
T 2xdw_A          126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQ-------DGKS-  197 (710)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCC-------SSCC-
T ss_pred             EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCc-------cccc-
Confidence            588999999999999876643     899999876543322222223567999999999998887754       0000 


Q ss_pred             EEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCce--eeEec--CCCcceEEEEECCCCCEEEEEeC-----CCc
Q 008467          352 QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRP--IKTFA--GHQGEVNCVKWDPTGSLLASCSD-----DVT  422 (564)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~--~~~~~--~h~~~i~~v~~~~~~~~las~s~-----dg~  422 (564)
                         .   +...           .......|++|++.++..  ...+.  .|...+..+.|+|||++|+.++.     +..
T Consensus       198 ---~---~~~~-----------~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~  260 (710)
T 2xdw_A          198 ---D---GTET-----------STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNR  260 (710)
T ss_dssp             ---S---SSCC-----------CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCE
T ss_pred             ---c---cccc-----------ccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccE
Confidence               0   0000           000122345555544331  12222  24556778999999999887765     568


Q ss_pred             EEEEeCCC------Ce-eeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC---CeEEEEeCCCCe--EEEEEeC
Q 008467          423 AKIWNMKQ------DK-YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD---STVKLWDVELGK--LLYSLNG  490 (564)
Q Consensus       423 i~iwd~~~------~~-~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~--~~~~~~~  490 (564)
                      |.+||+.+      +. ....+..+...+.. .|+|+|.        .+++.+..+   +.|.+||+.++.  ....+..
T Consensus       261 l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~--------~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~  331 (710)
T 2xdw_A          261 LWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGT--------VFTFKTNRHSPNYRLINIDFTDPEESKWKVLVP  331 (710)
T ss_dssp             EEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETT--------EEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC
T ss_pred             EEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCC--------EEEEEECCCCCCCEEEEEeCCCCCcccceeccC
Confidence            99999876      42 34455555555554 4777764        233444333   479999998764  2234545


Q ss_pred             CCC--CEEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCeEEEEEecC-CCEEEEEEccCCCEEEEEEcC----CcEEEEE
Q 008467          491 HRE--PVYSLAFSPTGEYLASGSLDK--SMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFAN----HTVCVLD  561 (564)
Q Consensus       491 h~~--~i~~~~~spdg~~lasgs~dg--~i~iw~~~~~~~~~~~~~~-~~i~~~~w~~~g~~la~~~~~----~~v~v~~  561 (564)
                      |..  .+..++|++++.+++++..|+  .|.+|++.+|+.+..+... +.+..++|+|+++.|++.+.+    +++.+||
T Consensus       332 ~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d  411 (710)
T 2xdw_A          332 EHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCD  411 (710)
T ss_dssp             CCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEE
T ss_pred             CCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEE
Confidence            543  688899998888889998888  4667787778877766543 457889999999988866554    4677777


Q ss_pred             e
Q 008467          562 F  562 (564)
Q Consensus       562 ~  562 (564)
                      +
T Consensus       412 ~  412 (710)
T 2xdw_A          412 L  412 (710)
T ss_dssp             T
T ss_pred             C
Confidence            5

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.70  E-value=5.7e-13  Score=128.39  Aligned_cols=277  Identities=8%  Similarity=0.037  Sum_probs=195.6

Q ss_pred             CCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEE
Q 008467          214 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG  293 (564)
Q Consensus       214 ~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg  293 (564)
                      .+...+.+++++|+|+++++...++.+.+|+.. +..         ..  .. .    ......+.+++++++|.++++.
T Consensus        12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~---------~~--~~-~----~~~~~~~~~i~~~~~g~l~v~~   74 (299)
T 2z2n_A           12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKI---------TE--YP-L----PTPDAKVMCLTISSDGEVWFTE   74 (299)
T ss_dssp             SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE---------EE--EE-C----SSTTCCEEEEEECTTSCEEEEE
T ss_pred             CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCe---------EE--ec-C----CcccCceeeEEECCCCCEEEeC
Confidence            345678999999999988877778899999875 321         00  00 0    0123568999999999988887


Q ss_pred             eCCCeEEEEECCCceeEe-ecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceE
Q 008467          294 SYDGQARIWSTNGDLKCT-LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF  372 (564)
Q Consensus       294 ~~dg~i~vw~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (564)
                      ..++.|..|+..+..... +......+.++.+.++|..+++...++.|.+||. ++.... +                  
T Consensus        75 ~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~-~------------------  134 (299)
T 2z2n_A           75 NAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIRE-Y------------------  134 (299)
T ss_dssp             TTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE-E------------------
T ss_pred             CCCCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEE-e------------------
Confidence            778999999987654322 2234557899999999988887777889999987 443221 0                  


Q ss_pred             EEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeee-cccccccEEEEEEcc
Q 008467          373 ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD-LREHSKEIYTIRWSP  451 (564)
Q Consensus       373 ~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~-~~~~~~~i~~i~~~p  451 (564)
                                           ....+...+.+++++++|.++++...++.|..||. +++.... +......+..+++.+
T Consensus       135 ---------------------~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~  192 (299)
T 2z2n_A          135 ---------------------ELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGN  192 (299)
T ss_dssp             ---------------------ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT
T ss_pred             ---------------------cCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECC
Confidence                                 00112345778999999998888777889999998 5544322 233445678899888


Q ss_pred             CCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE-EEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q 008467          452 TGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY-SLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY  530 (564)
Q Consensus       452 ~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~  530 (564)
                      ++.         +.++...++.|.+||. +++... .+..+...+.+++++++|+++++...++.|.+|+. +++. ..+
T Consensus       193 ~g~---------l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~  260 (299)
T 2z2n_A          193 DDA---------LWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEY  260 (299)
T ss_dssp             TSS---------EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEE
T ss_pred             CCC---------EEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEE
Confidence            764         4555556789999999 666433 23334567899999999997777767889999998 5654 344


Q ss_pred             ec---CCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          531 TG---NGGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       531 ~~---~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      ..   ...+.++++ ++|+..++.. ++.+..++.+
T Consensus       261 ~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~  294 (299)
T 2z2n_A          261 PIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLI  294 (299)
T ss_dssp             ECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC
T ss_pred             eCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcC
Confidence            22   246889999 8888777665 5677777754

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.70  E-value=7.9e-15  Score=144.27  Aligned_cols=265  Identities=11%  Similarity=0.053  Sum_probs=177.7

Q ss_pred             ceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCC
Q 008467          218 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDG  297 (564)
Q Consensus       218 ~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg  297 (564)
                      .|.+++|+|++..++..+.++.++.|.-.                .....    ......+.+++|+++|++++++..++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~----~~~~~~~~~~~~~~~g~l~~~~~~~~   66 (333)
T 2dg1_A            7 DLPTLFYSGKSNSAVPIISESELQTITAE----------------PWLEI----SKKGLQLEGLNFDRQGQLFLLDVFEG   66 (333)
T ss_dssp             CCCBCCSCGGGGCSSCCCCGGGSCEEECE----------------EEEEE----ESSCCCEEEEEECTTSCEEEEETTTC
T ss_pred             ccceeeecCCccceeEEeecccCcccccc----------------eeEEE----eccCccccCcEECCCCCEEEEECCCC
Confidence            46677899988777777888888888311                01111    11234578999999999888888999


Q ss_pred             eEEEEECCCceeE-eecCCCCCEEEEEeCCCCCEEEEeeCC----CcEEEEECCCcceeEEEe--ecccCeEEEEcCCCc
Q 008467          298 QARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYLLTGSCD----KTAIVWDVKTEEWKQQFE--FHSGPTLDVDWRNNV  370 (564)
Q Consensus       298 ~i~vw~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~D----~~v~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~  370 (564)
                      .|.+|+..+.... ....+...+.+++|+|+|+.+++...+    +.|.+||..++.....+.  .....+.++.+.++.
T Consensus        67 ~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g  146 (333)
T 2dg1_A           67 NIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKG  146 (333)
T ss_dssp             EEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTS
T ss_pred             EEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCC
Confidence            9999998654333 333567789999999999888777666    689999998877553332  122345666665554


Q ss_pred             eEEEEeC-------CCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEE-EEEeCCCcEEEEeCCC-Ceeee------
Q 008467          371 SFATSST-------DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL-ASCSDDVTAKIWNMKQ-DKYVH------  435 (564)
Q Consensus       371 ~~~~~~~-------d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l-as~s~dg~i~iwd~~~-~~~~~------  435 (564)
                      .+..+..       .+.|+.++....+.. .+..+...+..++|+|+++.| ++.+.++.|.+|+..+ +..+.      
T Consensus       147 ~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~  225 (333)
T 2dg1_A          147 GFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATI  225 (333)
T ss_dssp             CEEEEECCCBTTBCCEEEEEECTTSCCEE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEE
T ss_pred             CEEEEeccccccCCCceEEEEeCCCCEEE-EeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceE
Confidence            4433333       245666665443332 233333457899999999855 5556688999999863 22221      


Q ss_pred             --ecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCC------CEEEEEEcCCCCEE
Q 008467          436 --DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHRE------PVYSLAFSPTGEYL  507 (564)
Q Consensus       436 --~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~------~i~~~~~spdg~~l  507 (564)
                        .+..+ ..+..+++.+++.         ++++...++.|.+||. .++.+..+..+..      .+.+++|+|||+.|
T Consensus       226 ~~~~~~~-~~~~~i~~d~~G~---------l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L  294 (333)
T 2dg1_A          226 PYYFTGH-EGPDSCCIDSDDN---------LYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQL  294 (333)
T ss_dssp             EEECCSS-SEEEEEEEBTTCC---------EEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEE
T ss_pred             EEecCCC-CCCCceEECCCCC---------EEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEE
Confidence              11122 3567788888774         5566667899999998 4676666654432      58999999998777


Q ss_pred             EEEeCCC
Q 008467          508 ASGSLDK  514 (564)
Q Consensus       508 asgs~dg  514 (564)
                      +.++.++
T Consensus       295 ~v~~~~g  301 (333)
T 2dg1_A          295 IICSNDI  301 (333)
T ss_dssp             EEEEECG
T ss_pred             EEEeCcc
Confidence            6655543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.70  E-value=1.3e-14  Score=144.32  Aligned_cols=262  Identities=10%  Similarity=0.068  Sum_probs=175.0

Q ss_pred             CCCEEEEEe------CCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEee----------CCCcEEEEECCCc
Q 008467          286 EGTLLATGS------YDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGS----------CDKTAIVWDVKTE  348 (564)
Q Consensus       286 ~g~~l~sg~------~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s----------~D~~v~iwd~~~~  348 (564)
                      ++.++.+..      .|+.|.+||.. +++...+..+..+  .++|+|+|+++++++          .+++|.+||+.+.
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~   91 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL   91 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence            445555443      36899999964 5666667666666  899999999999886          3678999999998


Q ss_pred             ceeEEEeecc------cCeEEEEcCCC--ceEEEEeC-CCeEEEEEcCCCceeeE-ecCCCcceEEEEECCCC-CEEEEE
Q 008467          349 EWKQQFEFHS------GPTLDVDWRNN--VSFATSST-DNMIYVCKIGENRPIKT-FAGHQGEVNCVKWDPTG-SLLASC  417 (564)
Q Consensus       349 ~~~~~~~~~~------~~~~~~~~~~~--~~~~~~~~-d~~i~~~~~~~~~~~~~-~~~h~~~i~~v~~~~~~-~~las~  417 (564)
                      +.+..+....      .....+.+.++  ..+++... ++.|.+|++.+.+.+.. +... + ...+.+.|++ ..+++.
T Consensus        92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~-~~~v~~~p~~~~~~~~~  169 (361)
T 2oiz_A           92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-G-CWSVIPQPNRPRSFMTI  169 (361)
T ss_dssp             CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-T-EEEEEECTTSSSEEEEE
T ss_pred             cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-C-cceeEEcCCCCeeEEEE
Confidence            8887776431      22334444433  33344433 68999999999887776 4421 1 2235677776 677889


Q ss_pred             eCCCcEEEEeCCC-Ceeeee------cccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE--EEEE
Q 008467          418 SDDVTAKIWNMKQ-DKYVHD------LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL--LYSL  488 (564)
Q Consensus       418 s~dg~i~iwd~~~-~~~~~~------~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~  488 (564)
                      +.||.+.+|+... ++....      +.....++ .+.++|++        . .++..+.++.|.++|+..+..  +..+
T Consensus       170 ~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g--------~-~~~~~~~~~~v~v~d~~~~~~~~~~~~  239 (361)
T 2oiz_A          170 CGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDK--------D-KAHFVSYYGNVYSADFSGDEVKVDGPW  239 (361)
T ss_dssp             ETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECS--------S-EEEEEBTTSEEEEEECSSSSCEEEEEE
T ss_pred             CCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccC--------C-EEEEEeCCCeEEEEEecCCCceecccc
Confidence            9999999999765 333311      11111111 11112222        1 234456889999999875432  2222


Q ss_pred             eCC------C----CCEEEEEEcCCCCEEEEEeC-----------CCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCE
Q 008467          489 NGH------R----EPVYSLAFSPTGEYLASGSL-----------DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDK  547 (564)
Q Consensus       489 ~~h------~----~~i~~~~~spdg~~lasgs~-----------dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~  547 (564)
                      .-.      .    .....++|+||++.+.++..           .+.|.+||+.+++.++++.... +..++|+|||++
T Consensus       240 ~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~  318 (361)
T 2oiz_A          240 SLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNL  318 (361)
T ss_dssp             ESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTE
T ss_pred             cccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCE
Confidence            110      0    11123789999888776543           3489999999999999998877 999999999999


Q ss_pred             EEEEEcCCcEEEEEee
Q 008467          548 IAACFANHTVCVLDFR  563 (564)
Q Consensus       548 la~~~~~~~v~v~~~~  563 (564)
                      |+++.. +.|.|||.+
T Consensus       319 l~v~n~-~~v~v~D~~  333 (361)
T 2oiz_A          319 MLTLDG-GNVNVYDIS  333 (361)
T ss_dssp             EEEECS-SCEEEEECS
T ss_pred             EEEeCC-CeEEEEECC
Confidence            998876 899999964

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.70  E-value=5.9e-15  Score=160.78  Aligned_cols=244  Identities=12%  Similarity=0.076  Sum_probs=168.9

Q ss_pred             CCccceEEEEECCCCCEEEEEECCC-----cEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467          214 GHTSEVCACAWSPAGSLLASGSGDS-----TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  288 (564)
Q Consensus       214 ~h~~~V~~~~~sp~~~~lasgs~D~-----~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  288 (564)
                      +|...+..++|||||++||.++.++     .|++||+.++...         ...+..         ..+..++|+|||+
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~---------~~~~~~---------~~~~~~~wspDg~  183 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKEL---------PDVLER---------VKFSCMAWTHDGK  183 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEE---------EEEEEE---------ECSCCEEECTTSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC---------cccccC---------cccceEEEEeCCC
Confidence            4556788999999999998876543     8999999876421         001110         1256789999999


Q ss_pred             EEEEEeCCCe----------------EEEEECCCce---eEe--ecCCCCCEEEEEeCCCCCEEEEeeC-----CCcEEE
Q 008467          289 LLATGSYDGQ----------------ARIWSTNGDL---KCT--LSKHKGPIFSLKWNKKGDYLLTGSC-----DKTAIV  342 (564)
Q Consensus       289 ~l~sg~~dg~----------------i~vw~~~~~~---~~~--~~~h~~~V~~l~~~~~~~~l~s~s~-----D~~v~i  342 (564)
                      .|+.++.++.                |++|+..+..   ...  ...|...+.++.|+|+|++|+.++.     +..|.+
T Consensus       184 ~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~  263 (710)
T 2xdw_A          184 GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWY  263 (710)
T ss_dssp             EEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEE
T ss_pred             EEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEE
Confidence            9999988766                9999986532   222  2335666889999999999887765     456777


Q ss_pred             EECCC------cceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEE
Q 008467          343 WDVKT------EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLAS  416 (564)
Q Consensus       343 wd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las  416 (564)
                      ||+.+      +..                                        ....+..+...+.. .|+|+|+.|+.
T Consensus       264 ~d~~~~~~~~~~~~----------------------------------------~~~~l~~~~~~~~~-~~s~dg~~l~~  302 (710)
T 2xdw_A          264 CDLQQESNGITGIL----------------------------------------KWVKLIDNFEGEYD-YVTNEGTVFTF  302 (710)
T ss_dssp             EEGGGSSSSSCSSC----------------------------------------CCEEEECSSSSCEE-EEEEETTEEEE
T ss_pred             EECcccccccCCcc----------------------------------------ceEEeeCCCCcEEE-EEeccCCEEEE
Confidence            77754      210                                        11223333333333 47788887776


Q ss_pred             EeCC----CcEEEEeCCCCee--eeecccccc--cEEEEEEccCCCCCCCCCCcEEEEEEeCCCe--EEEEeCCCCeEEE
Q 008467          417 CSDD----VTAKIWNMKQDKY--VHDLREHSK--EIYTIRWSPTGSGTNNPNQQLILASASFDST--VKLWDVELGKLLY  486 (564)
Q Consensus       417 ~s~d----g~i~iwd~~~~~~--~~~~~~~~~--~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~--i~iwd~~~~~~~~  486 (564)
                      .+..    +.|.+||+.++..  ...+..|..  .+..+.|++.+         .++++...|+.  |.+||+.+|+.+.
T Consensus       303 ~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---------~lv~~~~~~g~~~l~~~~~~~g~~~~  373 (710)
T 2xdw_A          303 KTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSN---------FLVLCYLHDVKNTLQLHDLATGALLK  373 (710)
T ss_dssp             EECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTT---------EEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred             EECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCC---------EEEEEEEECCEEEEEEEECCCCCEEE
Confidence            6653    3699999887641  244445544  57788888544         36788888885  5667876788778


Q ss_pred             EEeCCCCCEEEEEEcCCCCEEEEE-e---CCCcEEEEeCCCCe
Q 008467          487 SLNGHREPVYSLAFSPTGEYLASG-S---LDKSMHIWSLKEGK  525 (564)
Q Consensus       487 ~~~~h~~~i~~~~~spdg~~lasg-s---~dg~i~iw~~~~~~  525 (564)
                      .+..+...|..++++|++..|+.. +   ..++|+.||+.+++
T Consensus       374 ~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          374 IFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             ecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            888777778999999999766533 2   35789999998877

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.68  E-value=3.2e-14  Score=137.51  Aligned_cols=259  Identities=14%  Similarity=0.097  Sum_probs=166.9

Q ss_pred             eEccCCccceEEEEECCCCC-EEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467          210 TILEGHTSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  288 (564)
Q Consensus       210 ~~l~~h~~~V~~~~~sp~~~-~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  288 (564)
                      ..+..+.....+++|+|+++ +++++..++.|.+|+..++ .              ....    .....+.+++++++|+
T Consensus        21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~--------------~~~~----~~~~~~~~l~~~~dg~   81 (296)
T 3e5z_A           21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L--------------SPEM----HPSHHQNGHCLNKQGH   81 (296)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E--------------EEEE----SSCSSEEEEEECTTCC
T ss_pred             EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e--------------EEEE----CCCCCcceeeECCCCc
Confidence            44555666778999999998 8888889999999997643 1              0111    1235688999999999


Q ss_pred             EEEEEeCCCeEEEEEC-CCceeEeecCC----CCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEE
Q 008467          289 LLATGSYDGQARIWST-NGDLKCTLSKH----KGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD  363 (564)
Q Consensus       289 ~l~sg~~dg~i~vw~~-~~~~~~~~~~h----~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~  363 (564)
                      ++++...++.|.+|+. .+.........    ...+..++++|+|+.+++.+..++...+......    .         
T Consensus        82 l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~----~---------  148 (296)
T 3e5z_A           82 LIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGE----M---------  148 (296)
T ss_dssp             EEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCC----C---------
T ss_pred             EEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccccccccccccc----c---------
Confidence            8888777899999998 55543332211    1245678899999887773321110000000000    0         


Q ss_pred             EEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCC-CCee---eeeccc
Q 008467          364 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK-QDKY---VHDLRE  439 (564)
Q Consensus       364 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~-~~~~---~~~~~~  439 (564)
                                 ....+.|+.++..  ..+..+..+....+.++|+|+++++++.+.++.|.+|++. ++..   ...+..
T Consensus       149 -----------~~~~~~l~~~~~~--g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~  215 (296)
T 3e5z_A          149 -----------ELPGRWVFRLAPD--GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTV  215 (296)
T ss_dssp             -----------CSSSCEEEEECTT--SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECC
T ss_pred             -----------cCCCcEEEEECCC--CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeC
Confidence                       0001112222211  1122233445567889999999998888888999999986 4433   222223


Q ss_pred             ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEE-cCCCCEEEEEeCCCcEEE
Q 008467          440 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAF-SPTGEYLASGSLDKSMHI  518 (564)
Q Consensus       440 ~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~-spdg~~lasgs~dg~i~i  518 (564)
                      +...+..+++.++|.         +.++.  ++.|.+||.. ++.+..+..+.. +++++| +|+++.|.+++.++ +.-
T Consensus       216 ~~~~p~~i~~d~~G~---------l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~  281 (296)
T 3e5z_A          216 EPGKTDGLRVDAGGL---------IWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWS  281 (296)
T ss_dssp             SSSCCCSEEEBTTSC---------EEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEE
T ss_pred             CCCCCCeEEECCCCC---------EEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEE
Confidence            344556788888764         33333  7899999987 788888877766 899999 69999999888765 556


Q ss_pred             EeCCCCeEE
Q 008467          519 WSLKEGKIV  527 (564)
Q Consensus       519 w~~~~~~~~  527 (564)
                      ++.++.++.
T Consensus       282 ~~~~~~~~~  290 (296)
T 3e5z_A          282 IETNVRGLE  290 (296)
T ss_dssp             EECSCCBCC
T ss_pred             EEccccccc
Confidence            677666543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.65  E-value=3.4e-15  Score=162.24  Aligned_cols=245  Identities=10%  Similarity=0.056  Sum_probs=163.8

Q ss_pred             cCCccceEEEEECCCCCEEE-----EEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC
Q 008467          213 EGHTSEVCACAWSPAGSLLA-----SGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG  287 (564)
Q Consensus       213 ~~h~~~V~~~~~sp~~~~la-----sgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g  287 (564)
                      .+|...+..++|||||++||     +|+.+..|++||+.++.....               ....  ......++|+|||
T Consensus       117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~---------------~~~~--~~~~~~~~wspDg  179 (695)
T 2bkl_A          117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV---------------DVIE--GGKYATPKWTPDS  179 (695)
T ss_dssp             SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS---------------CCBS--CCTTCCCEECTTS
T ss_pred             cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC---------------cccC--cccccceEEecCC
Confidence            35767789999999999998     455567999999988753200               0000  0112568999999


Q ss_pred             CEEEEEeCCCe-------------EEEEECCCce-----eEeecCCCCCEEEEEeCCCCCEEEEeeCCC----cEEEEEC
Q 008467          288 TLLATGSYDGQ-------------ARIWSTNGDL-----KCTLSKHKGPIFSLKWNKKGDYLLTGSCDK----TAIVWDV  345 (564)
Q Consensus       288 ~~l~sg~~dg~-------------i~vw~~~~~~-----~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~----~v~iwd~  345 (564)
                      +.|+.++.|..             |++|+..+..     ......|...+.++.|+|+|++|+.++.++    .|.+||.
T Consensus       180 ~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~  259 (695)
T 2bkl_A          180 KGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRP  259 (695)
T ss_dssp             SEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECT
T ss_pred             CEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcC
Confidence            99999998876             9999986432     223344667889999999999998887766    6777776


Q ss_pred             CCcceeEEEeecccCeEEEEcCCCceEEEEe---CCCeEEEEEcCCCce--eeEec-CC-CcceEEEEECCCCCEEEEEe
Q 008467          346 KTEEWKQQFEFHSGPTLDVDWRNNVSFATSS---TDNMIYVCKIGENRP--IKTFA-GH-QGEVNCVKWDPTGSLLASCS  418 (564)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~i~~~~~~~~~~--~~~~~-~h-~~~i~~v~~~~~~~~las~s  418 (564)
                      .++.+.. +..+........|.++..++.+.   .++.|++|++..+.+  ...+. .+ ...+..++|+ ++.++++..
T Consensus       260 ~~~~~~~-l~~~~~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~  337 (695)
T 2bkl_A          260 GEKDFRL-LVKGVGAKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYL  337 (695)
T ss_dssp             TCSSCEE-EEECSSCCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEE
T ss_pred             CCCceEE-eecCCCceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEE
Confidence            6665443 33333334444455555333333   357899999876543  23333 33 4467888888 778899999


Q ss_pred             CCCcEEEEeCC-CCeeeeecccc-cccEEEEEEccCCCCCCCCCCcEEEEEEe---CCCeEEEEeCCCCeE
Q 008467          419 DDVTAKIWNMK-QDKYVHDLREH-SKEIYTIRWSPTGSGTNNPNQQLILASAS---FDSTVKLWDVELGKL  484 (564)
Q Consensus       419 ~dg~i~iwd~~-~~~~~~~~~~~-~~~i~~i~~~p~~~~~~~~~~~~~l~s~s---~dg~i~iwd~~~~~~  484 (564)
                      .|+..+||.+. .++....+..+ ...+..+.++|++.        .++++.+   ..++|++||+.+++.
T Consensus       338 ~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~--------~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          338 KDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLD--------DAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             ETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCS--------EEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             ECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCC--------EEEEEEcCCCCCCEEEEEECCCCcE
Confidence            99999888654 34445555544 45566666666543        2333333   247899999988764

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.64  E-value=8.8e-15  Score=158.97  Aligned_cols=238  Identities=11%  Similarity=-0.007  Sum_probs=157.4

Q ss_pred             CCCeEEEEECCCCCEEEE-----EeCCCeEEEEECCCceeEeecCCCCCE--EEEEeCCCCCEEEEeeCCCc--------
Q 008467          275 SKDVTTLDWNGEGTLLAT-----GSYDGQARIWSTNGDLKCTLSKHKGPI--FSLKWNKKGDYLLTGSCDKT--------  339 (564)
Q Consensus       275 ~~~V~~l~~s~~g~~l~s-----g~~dg~i~vw~~~~~~~~~~~~h~~~V--~~l~~~~~~~~l~s~s~D~~--------  339 (564)
                      ...+..++|||||++||.     |+.+..|++|+..+..... ..+...+  .+++|+|+|+.|+.++.|..        
T Consensus       120 ~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~-~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~  198 (695)
T 2bkl_A          120 TVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK-VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDER  198 (695)
T ss_dssp             CEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS-SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGG
T ss_pred             CEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC-CcccCcccccceEEecCCCEEEEEEecCCCCCccccC
Confidence            346889999999999994     4445689999987644320 1122222  67899999999999988765        


Q ss_pred             -----EEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEE
Q 008467          340 -----AIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL  414 (564)
Q Consensus       340 -----v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l  414 (564)
                           |++|++.++....                                     ..+.....|...+.++.|+|||++|
T Consensus       199 ~~~~~v~~~~l~t~~~~~-------------------------------------~lv~~~~~~~~~~~~~~~SpDG~~l  241 (695)
T 2bkl_A          199 PGYTTIRYHTLGTEPSKD-------------------------------------TVVHERTGDPTTFLQSDLSRDGKYL  241 (695)
T ss_dssp             GGGCEEEEEETTSCGGGC-------------------------------------EEEECCCCCTTCEEEEEECTTSCCE
T ss_pred             CCCCEEEEEECCCCchhc-------------------------------------eEEEecCCCCEEEEEEEECCCCCEE
Confidence                 6666655432100                                     0111223345567899999999998


Q ss_pred             EEEeCCC----cEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEe---CCCeEEEEeCCCCeE--E
Q 008467          415 ASCSDDV----TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASAS---FDSTVKLWDVELGKL--L  485 (564)
Q Consensus       415 as~s~dg----~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s---~dg~i~iwd~~~~~~--~  485 (564)
                      +.++.++    .|.+|+..++. ...+..+...+....| +++        . ++++..   .++.|.+||+.++..  .
T Consensus       242 ~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g--------~-l~~~s~~~~~~~~l~~~d~~~~~~~~~  310 (695)
T 2bkl_A          242 FVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKD--------R-FYVLTDEGAPRQRVFEVDPAKPARASW  310 (695)
T ss_dssp             EEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETT--------E-EEEEECTTCTTCEEEEEBTTBCSGGGC
T ss_pred             EEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCC--------c-EEEEECCCCCCCEEEEEeCCCCCccCC
Confidence            8877665    66677655443 3344455555556556 443        2 444444   358999999987652  2


Q ss_pred             EEEeCC--CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC-CCeEEEEEec--CCCEEEEEEccCCCEEEEEEcC----Cc
Q 008467          486 YSLNGH--REPVYSLAFSPTGEYLASGSLDKSMHIWSLK-EGKIVKTYTG--NGGIFEVCWNKEGDKIAACFAN----HT  556 (564)
Q Consensus       486 ~~~~~h--~~~i~~~~~spdg~~lasgs~dg~i~iw~~~-~~~~~~~~~~--~~~i~~~~w~~~g~~la~~~~~----~~  556 (564)
                      ..+..+  ...+..++|+ ++.+++++..|+..+||.+. +|+.+..+..  .+.+..++|+|+|+.|++.+.+    ++
T Consensus       311 ~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~  389 (695)
T 2bkl_A          311 KEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQ  389 (695)
T ss_dssp             EEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEE
T ss_pred             eEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCE
Confidence            233333  4568889998 77888999999988888664 4655555543  3457788999999988866554    46


Q ss_pred             EEEEEe
Q 008467          557 VCVLDF  562 (564)
Q Consensus       557 v~v~~~  562 (564)
                      |.+||+
T Consensus       390 v~~~d~  395 (695)
T 2bkl_A          390 IYKTSV  395 (695)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
Confidence            777775

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.63  E-value=3.9e-13  Score=131.87  Aligned_cols=281  Identities=11%  Similarity=0.034  Sum_probs=191.7

Q ss_pred             CCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC-CceeEeecC
Q 008467          236 GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSK  314 (564)
Q Consensus       236 ~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~  314 (564)
                      .+++|.+||..+++......         ....+  .........+.+. ++++.++...++.|.+||.. ++....+. 
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~---------~~~n~--~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-   81 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVF---------YRANG--FKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-   81 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHH---------HHHHS--SCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-
T ss_pred             CCceEEEEECCCCEEhhhhH---------hhhcC--cccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-
Confidence            48899999988764321100         00000  0111235666664 45566666678999999986 55555664 


Q ss_pred             CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeeccc-----CeEEEEcCCCceEEEEe-CCCeEEEEEcCC
Q 008467          315 HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG-----PTLDVDWRNNVSFATSS-TDNMIYVCKIGE  388 (564)
Q Consensus       315 h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~d~~i~~~~~~~  388 (564)
                      .......+++++++..+++...++.|.+||+.+++....+.....     ....+.+.++..+++.. .++.|.+++..+
T Consensus        82 ~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t  161 (328)
T 3dsm_A           82 GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTET  161 (328)
T ss_dssp             CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTT
T ss_pred             CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCC
Confidence            345678999999884444444899999999999988777665430     22234444555666655 488999999998


Q ss_pred             CceeeEecCCCcceEEEEECCCCCEEEEEeCC----------CcEEEEeCCCCeeeeecccc-cccEEEEEEccCCCCCC
Q 008467          389 NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD----------VTAKIWNMKQDKYVHDLREH-SKEIYTIRWSPTGSGTN  457 (564)
Q Consensus       389 ~~~~~~~~~h~~~i~~v~~~~~~~~las~s~d----------g~i~iwd~~~~~~~~~~~~~-~~~i~~i~~~p~~~~~~  457 (564)
                      .+.+..+... .....++++|+|++++++..+          +.|.+||..+++....+... ......++++|++.   
T Consensus       162 ~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~---  237 (328)
T 3dsm_A          162 DKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRD---  237 (328)
T ss_dssp             TEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSC---
T ss_pred             CeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCC---
Confidence            8877766542 235678999999988877665          78999999988877665432 23568999999765   


Q ss_pred             CCCCcEEEEEEeCCCeEEEEeCCCCeEEEE--EeCCCCCEEEEEEcC-CCCEEEEE----eCCCcEEEEeCCCCeEEEEE
Q 008467          458 NPNQQLILASASFDSTVKLWDVELGKLLYS--LNGHREPVYSLAFSP-TGEYLASG----SLDKSMHIWSLKEGKIVKTY  530 (564)
Q Consensus       458 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~h~~~i~~~~~sp-dg~~lasg----s~dg~i~iw~~~~~~~~~~~  530 (564)
                            .|..+..  .|.+||..+++....  +.........++++| ++..+++.    ..++.|.+|+.. |++++++
T Consensus       238 ------~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i  308 (328)
T 3dsm_A          238 ------TLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEF  308 (328)
T ss_dssp             ------EEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred             ------EEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence                  3444433  899999988775321  121235678999999 56666666    578999999998 9999988


Q ss_pred             ecCCCEEEEEEc
Q 008467          531 TGNGGIFEVCWN  542 (564)
Q Consensus       531 ~~~~~i~~~~w~  542 (564)
                      ........++|-
T Consensus       309 ~~G~~P~~~~~~  320 (328)
T 3dsm_A          309 YVGIIPGAFCWK  320 (328)
T ss_dssp             EEEESEEEEEEE
T ss_pred             EeccCcceEEEe
Confidence            765566677663

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.63  E-value=1.5e-13  Score=131.03  Aligned_cols=213  Identities=18%  Similarity=0.141  Sum_probs=162.2

Q ss_pred             CCCCEEEEEeCCCeEEEEEC-CCceeEeecCCC-CCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeE
Q 008467          285 GEGTLLATGSYDGQARIWST-NGDLKCTLSKHK-GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL  362 (564)
Q Consensus       285 ~~g~~l~sg~~dg~i~vw~~-~~~~~~~~~~h~-~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~  362 (564)
                      ..+++|++++.++.|.+||. +|+.+..+..+. ..+.++.+.|+|+.++  +.++.|..||. +++.+..+..      
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~------   73 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAA------   73 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEEC------
T ss_pred             CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcC------
Confidence            34688999999999999998 788888887766 4678899999999888  45788999998 6665443321      


Q ss_pred             EEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC-CCcEEEEeCCCCeeeeeccc--
Q 008467          363 DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAKIWNMKQDKYVHDLRE--  439 (564)
Q Consensus       363 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~-dg~i~iwd~~~~~~~~~~~~--  439 (564)
                                                        ++...+.++.+.++|+++++.+. ++.+..+|. +++.+..+..  
T Consensus        74 ----------------------------------~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~  118 (276)
T 3no2_A           74 ----------------------------------PAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFET  118 (276)
T ss_dssp             ----------------------------------CTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECC
T ss_pred             ----------------------------------CCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccC
Confidence                                              01124567888999999988877 777777775 5555544431  


Q ss_pred             ----ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCc
Q 008467          440 ----HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKS  515 (564)
Q Consensus       440 ----~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~  515 (564)
                          +......+...++|.         ++++.+.++.|..||.. |+.++++... ..+.++.+.++|+.+++++.+++
T Consensus       119 ~~~~~~~~~~~v~~~~~G~---------~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~  187 (276)
T 3no2_A          119 GIERPHAQFRQINKNKKGN---------YLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHC  187 (276)
T ss_dssp             SCSSGGGSCSCCEECTTSC---------EEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSE
T ss_pred             CCCcccccccCceECCCCC---------EEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCe
Confidence                112233344455543         67888899999999998 9999998865 34567888999999999998999


Q ss_pred             EEEEeCCCCeEEEEEecCC-------CEEEEEEccCCCEEEEEE
Q 008467          516 MHIWSLKEGKIVKTYTGNG-------GIFEVCWNKEGDKIAACF  552 (564)
Q Consensus       516 i~iw~~~~~~~~~~~~~~~-------~i~~~~w~~~g~~la~~~  552 (564)
                      |..+|..+|+++..+....       .+..++..++|+.+++.+
T Consensus       188 v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          188 FVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             EEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             EEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence            9999999999999986431       167888999999998886

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.63  E-value=2.3e-13  Score=129.72  Aligned_cols=242  Identities=14%  Similarity=0.147  Sum_probs=175.3

Q ss_pred             CCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC
Q 008467          227 AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG  306 (564)
Q Consensus       227 ~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~  306 (564)
                      .+++|++++.|+.|.+||..+++..             ......   ....+.++.++|+|++++  +.++.|..|+.+|
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~-------------w~~~~~---~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~~G   65 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIV-------------WEYPLE---KGWECNSVAATKAGEILF--SYSKGAKMITRDG   65 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEE-------------EEEECC---TTCCCCEEEECTTSCEEE--ECBSEEEEECTTS
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEE-------------EEeCCC---ccCCCcCeEECCCCCEEE--eCCCCEEEECCCC
Confidence            4578999999999999998776521             111111   113578889999999998  4578899999988


Q ss_pred             ceeEeecCC-CCCEEEEEeCCCCCEEEEeeC-CCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEE
Q 008467          307 DLKCTLSKH-KGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVC  384 (564)
Q Consensus       307 ~~~~~~~~h-~~~V~~l~~~~~~~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~  384 (564)
                      +.+..+..+ ...+.++.+.++|+.+++.+. ++.+..+|. +++.+..+...                           
T Consensus        66 ~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~---------------------------  117 (276)
T 3no2_A           66 RELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFE---------------------------  117 (276)
T ss_dssp             CEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEEC---------------------------
T ss_pred             CEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEecc---------------------------
Confidence            888877765 357889999999999999887 777777775 55544433211                           


Q ss_pred             EcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEE
Q 008467          385 KIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLI  464 (564)
Q Consensus       385 ~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~  464 (564)
                         ..     ..++......+++.++|+++++.+.++.|.+||.. ++.+..+.... ..+++...+++.         +
T Consensus       118 ---~~-----~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~~~~~~~g~---------~  178 (276)
T 3no2_A          118 ---TG-----IERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSG-TPFSSAFLDNGD---------C  178 (276)
T ss_dssp             ---CS-----CSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSS-CCCEEEECTTSC---------E
T ss_pred             ---CC-----CCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCC-CccceeEcCCCC---------E
Confidence               00     01111234456778999999999999999999988 88887776543 345566666654         6


Q ss_pred             EEEEeCCCeEEEEeCCCCeEEEEEeCCC------CCEEEEEEcCCCCEEEEEeC--C------CcEEEEeC-CCCeEEEE
Q 008467          465 LASASFDSTVKLWDVELGKLLYSLNGHR------EPVYSLAFSPTGEYLASGSL--D------KSMHIWSL-KEGKIVKT  529 (564)
Q Consensus       465 l~s~s~dg~i~iwd~~~~~~~~~~~~h~------~~i~~~~~spdg~~lasgs~--d------g~i~iw~~-~~~~~~~~  529 (564)
                      +++++.++.|..+|..+|+.++++..+.      ..+..++..++|..+++...  .      +..+++.+ .+|+++.+
T Consensus       179 ~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~  258 (276)
T 3no2_A          179 LVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQ  258 (276)
T ss_dssp             EEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEE
T ss_pred             EEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEE
Confidence            7777778899999999999999986432      22788999999999988742  1      13345555 58889888


Q ss_pred             EecC
Q 008467          530 YTGN  533 (564)
Q Consensus       530 ~~~~  533 (564)
                      |...
T Consensus       259 ~~~~  262 (276)
T 3no2_A          259 LNDK  262 (276)
T ss_dssp             ECCT
T ss_pred             ecCc
Confidence            8654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.63  E-value=1e-13  Score=131.83  Aligned_cols=235  Identities=7%  Similarity=-0.038  Sum_probs=160.5

Q ss_pred             CEEEEEeCCCCCEEE-EeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCC-ceEEEEeCCCeEEEEEcCCCceeeEe
Q 008467          318 PIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTF  395 (564)
Q Consensus       318 ~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~  395 (564)
                      ...+++++++|+.++ +.+.++.|.+||..+.............+..+.+..+ ..+++.. ++.|++|+...... ..+
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~  102 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVL  102 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EEC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-eee
Confidence            567899999998777 5577899999997665432211112123445555433 3445544 88899998765443 223


Q ss_pred             c-CCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeE
Q 008467          396 A-GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTV  474 (564)
Q Consensus       396 ~-~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i  474 (564)
                      . .....+.+++++++|+++++...++.|.+|+..+.............+..+++.|++.         ++++...++.|
T Consensus       103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~---------l~v~~~~~~~i  173 (270)
T 1rwi_B          103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN---------VYVTDTDNNRV  173 (270)
T ss_dssp             CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCC---------EEEEEGGGTEE
T ss_pred             ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCC---------EEEEECCCCEE
Confidence            2 2335688999999999888888889999998665443322222223457788887664         55666667899


Q ss_pred             EEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec-CCCEEEEEEccCCCEEEEEEc
Q 008467          475 KLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFA  553 (564)
Q Consensus       475 ~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~-~~~i~~~~w~~~g~~la~~~~  553 (564)
                      .+||............+...+..|+++++|.++++...++.|.+|+............ ...+.+++++++|+.+++...
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~  253 (270)
T 1rwi_B          174 VKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRG  253 (270)
T ss_dssp             EEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGG
T ss_pred             EEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECC
Confidence            9999987665443333435689999999998888887888999999876543322112 245899999999998888889


Q ss_pred             CCcEEEEEee
Q 008467          554 NHTVCVLDFR  563 (564)
Q Consensus       554 ~~~v~v~~~~  563 (564)
                      ++.|.+|+..
T Consensus       254 ~~~v~~~~~~  263 (270)
T 1rwi_B          254 NDRVVKLTSL  263 (270)
T ss_dssp             GTEEEEECCC
T ss_pred             CCEEEEEcCC
Confidence            9999999764

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.62  E-value=1.1e-13  Score=131.53  Aligned_cols=239  Identities=8%  Similarity=-0.019  Sum_probs=164.9

Q ss_pred             CeEEEEECCCCCEEE-EEeCCCeEEEEECCCceeEee-cCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEE
Q 008467          277 DVTTLDWNGEGTLLA-TGSYDGQARIWSTNGDLKCTL-SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF  354 (564)
Q Consensus       277 ~V~~l~~s~~g~~l~-sg~~dg~i~vw~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  354 (564)
                      ...+++++++|++++ +...++.|.+|+..+.....+ ..+...+.+++++++|+.+++.. ++.|.+||..+.......
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~  103 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP  103 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence            578899999999777 547789999998765443332 22334678899999998666655 889999998765433211


Q ss_pred             eecccCeEEEEcCC-CceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCee
Q 008467          355 EFHSGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY  433 (564)
Q Consensus       355 ~~~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~  433 (564)
                      .........+.+.. ...+++...++.|++++................+.+++++++|+++++...++.|.+||......
T Consensus       104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~  183 (270)
T 1rwi_B          104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ  183 (270)
T ss_dssp             CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred             cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce
Confidence            11113455565543 34566666778898886654433322223334678899999999888887888999999887665


Q ss_pred             eeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC
Q 008467          434 VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD  513 (564)
Q Consensus       434 ~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~d  513 (564)
                      ......+...+..+++.++|.         ++++...++.|.+||............+...+.+++++|+|+++++...+
T Consensus       184 ~~~~~~~~~~p~~i~~d~~g~---------l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~  254 (270)
T 1rwi_B          184 VVLPFTDITAPWGIAVDEAGT---------VYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGN  254 (270)
T ss_dssp             EECCCSSCCSEEEEEECTTCC---------EEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGG
T ss_pred             EeecccCCCCceEEEECCCCC---------EEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCC
Confidence            433333335678899988764         56666678899999987554333222333568999999999988998999


Q ss_pred             CcEEEEeCCCCe
Q 008467          514 KSMHIWSLKEGK  525 (564)
Q Consensus       514 g~i~iw~~~~~~  525 (564)
                      ++|.+|+....+
T Consensus       255 ~~v~~~~~~~~~  266 (270)
T 1rwi_B          255 DRVVKLTSLEHH  266 (270)
T ss_dssp             TEEEEECCCGGG
T ss_pred             CEEEEEcCCCcc
Confidence            999999987544

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.60  E-value=1.3e-11  Score=118.82  Aligned_cols=270  Identities=10%  Similarity=0.055  Sum_probs=188.4

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeE-eecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEE
Q 008467          276 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF  354 (564)
Q Consensus       276 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  354 (564)
                      ..+.++++.++|++.++...++.|.+|+..+.... .+..+...+.++.+.++|+.+++...++.|..||.. ++.. .+
T Consensus        20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~   97 (300)
T 2qc5_A           20 SGPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EY   97 (300)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EE
T ss_pred             CCcceeeECCCCCEEEEcCCCCeEEEECCCCceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-Ee
Confidence            46889999999998888778899999998754433 223344678999999999888877778899999987 5543 23


Q ss_pred             ee--cccCeEEEEcC-CCceEEEEeCCCeEEEEEcCCCcee-eEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 008467          355 EF--HSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENRPI-KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ  430 (564)
Q Consensus       355 ~~--~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~-~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~  430 (564)
                      ..  ....+..+... +...+++...++.|+.++.. ++.. ..+......+.++++++++++.++...++.|..|+. +
T Consensus        98 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~  175 (300)
T 2qc5_A           98 PLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-T  175 (300)
T ss_dssp             ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-T
T ss_pred             cCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-C
Confidence            22  22345555554 34455666667888888876 3332 222334457889999999998777777889999998 4


Q ss_pred             Ceeee-ecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEE-EeCCCCCEEEEEEcCCCCEEE
Q 008467          431 DKYVH-DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYS-LNGHREPVYSLAFSPTGEYLA  508 (564)
Q Consensus       431 ~~~~~-~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~h~~~i~~~~~spdg~~la  508 (564)
                      +.... .+..+...+..+++.+++.         +.++....+.|.+||. +++.... +..+...+.+++++++|++++
T Consensus       176 g~~~~~~~~~~~~~~~~i~~d~~g~---------l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v  245 (300)
T 2qc5_A          176 GKLEEYPLPTNAAAPVGITSGNDGA---------LWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWF  245 (300)
T ss_dssp             CCEEEEECSSTTCCEEEEEECTTSS---------EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEE
T ss_pred             CcEEEeeCCCCCCCcceEEECCCCC---------EEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEE
Confidence            44332 2223345678888888764         4455555678999998 4554332 333456689999999999777


Q ss_pred             EEeCCCcEEEEeCCCCeEEEEEec---CCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          509 SGSLDKSMHIWSLKEGKIVKTYTG---NGGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       509 sgs~dg~i~iw~~~~~~~~~~~~~---~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      +...++.|..|+. +++.. .+..   ...+.+++.+++|+..++.. + .|..+|.+
T Consensus       246 ~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          246 TEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             EETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred             eccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence            7767789999998 55543 3322   34578899999998766665 5 78777754

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.60  E-value=7.4e-13  Score=128.77  Aligned_cols=239  Identities=9%  Similarity=0.106  Sum_probs=162.8

Q ss_pred             CCeEEEEECCCCCEEEE-------EeCCCeEEEEECCCceeEeecC-----CCCCEEEEEeCCC-CCEEEEeeCCCcEEE
Q 008467          276 KDVTTLDWNGEGTLLAT-------GSYDGQARIWSTNGDLKCTLSK-----HKGPIFSLKWNKK-GDYLLTGSCDKTAIV  342 (564)
Q Consensus       276 ~~V~~l~~s~~g~~l~s-------g~~dg~i~vw~~~~~~~~~~~~-----h~~~V~~l~~~~~-~~~l~s~s~D~~v~i  342 (564)
                      ....+++|+++|.++++       +..++.|.+|+........+..     +...+.++.++++ |+.+++ +..+.|.+
T Consensus        18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~-~~~~~l~~   96 (314)
T 1pjx_A           18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-DMRLGLLV   96 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE-ETTTEEEE
T ss_pred             CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE-ECCCCEEE
Confidence            34678999999998888       6778999999964333333322     5567899999999 654444 44457888


Q ss_pred             EECCCcceeEE-EeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCC-
Q 008467          343 WDVKTEEWKQQ-FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD-  420 (564)
Q Consensus       343 wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~d-  420 (564)
                      ||.. ++.... ....                              .       ......+.+++++++|+++++...+ 
T Consensus        97 ~d~~-g~~~~~~~~~~------------------------------~-------~~~~~~~~~i~~d~~g~l~v~~~~~~  138 (314)
T 1pjx_A           97 VQTD-GTFEEIAKKDS------------------------------E-------GRRMQGCNDCAFDYEGNLWITAPAGE  138 (314)
T ss_dssp             EETT-SCEEECCSBCT------------------------------T-------SCBCBCCCEEEECTTSCEEEEECBCB
T ss_pred             EeCC-CCEEEEEeccC------------------------------C-------CccccCCcCEEECCCCCEEEEecCcc
Confidence            9887 543211 0000                              0       0012346789999999988777655 


Q ss_pred             --------------CcEEEEeCCCCeeeeecccccccEEEEEEc----cCCCCCCCCCCcEEEEEEeCCCeEEEEeCC-C
Q 008467          421 --------------VTAKIWNMKQDKYVHDLREHSKEIYTIRWS----PTGSGTNNPNQQLILASASFDSTVKLWDVE-L  481 (564)
Q Consensus       421 --------------g~i~iwd~~~~~~~~~~~~~~~~i~~i~~~----p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~-~  481 (564)
                                    +.|..|+.. ++.. .+..+......++|+    |++.        .++++...++.|.+||+. .
T Consensus       139 ~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~~~~~~~~~i~~~~~~d~dg~--------~l~v~~~~~~~i~~~~~~~~  208 (314)
T 1pjx_A          139 VAPADYTRSMQEKFGSIYCFTTD-GQMI-QVDTAFQFPNGIAVRHMNDGRPY--------QLIVAETPTKKLWSYDIKGP  208 (314)
T ss_dssp             CTTSCCCBTTSSSCEEEEEECTT-SCEE-EEEEEESSEEEEEEEECTTSCEE--------EEEEEETTTTEEEEEEEEET
T ss_pred             cccccccccccCCCCeEEEECCC-CCEE-EeccCCCCcceEEEecccCCCCC--------EEEEEECCCCeEEEEECCCC
Confidence                          567777765 4332 222333446788888    7653        245555678999999976 4


Q ss_pred             CeE-----EEEEeCCC-CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC-CCEEEEEEccCCCEEEEE-Ec
Q 008467          482 GKL-----LYSLNGHR-EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAAC-FA  553 (564)
Q Consensus       482 ~~~-----~~~~~~h~-~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~-~~i~~~~w~~~g~~la~~-~~  553 (564)
                      ++.     ...+..+. ..+..++++++|+++++...++.|.+|+..+++.+..+... ..+.+++|+++|+.|.++ ..
T Consensus       209 g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~  288 (314)
T 1pjx_A          209 AKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE  288 (314)
T ss_dssp             TEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETT
T ss_pred             CccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCC
Confidence            542     23334343 55789999999999998888899999999878777666554 568999999999966555 44


Q ss_pred             CCcEEEEEee
Q 008467          554 NHTVCVLDFR  563 (564)
Q Consensus       554 ~~~v~v~~~~  563 (564)
                      ++.|.+|++.
T Consensus       289 ~~~l~~~~~~  298 (314)
T 1pjx_A          289 NNAVWKFEWQ  298 (314)
T ss_dssp             TTEEEEEECS
T ss_pred             CCeEEEEeCC
Confidence            5788888753

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.58  E-value=3.1e-13  Score=147.79  Aligned_cols=236  Identities=14%  Similarity=0.094  Sum_probs=155.6

Q ss_pred             CCCCEEEEEeCCCCCEEEEeeCC-----CcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCC----------
Q 008467          315 HKGPIFSLKWNKKGDYLLTGSCD-----KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDN----------  379 (564)
Q Consensus       315 h~~~V~~l~~~~~~~~l~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~----------  379 (564)
                      |...+.+++|||+|++|+.++.+     .+|++||+.+++.... .........+.|.++..|+.++.+.          
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~  239 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQAL  239 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTTSEEEEEECCCC--------C
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECCCEEEEEEecCcccccccccC
Confidence            33468899999999999876654     4699999999987653 1111122467787665565555443          


Q ss_pred             ----eEEEEEcCCCce--eeEecC--CCcceEEEEECCCCCEEEEEeCCC-----cEEEEeCCCC--eeeeecccccccE
Q 008467          380 ----MIYVCKIGENRP--IKTFAG--HQGEVNCVKWDPTGSLLASCSDDV-----TAKIWNMKQD--KYVHDLREHSKEI  444 (564)
Q Consensus       380 ----~i~~~~~~~~~~--~~~~~~--h~~~i~~v~~~~~~~~las~s~dg-----~i~iwd~~~~--~~~~~~~~~~~~i  444 (564)
                          .|++|+++++..  ...+..  +...+..+.|+|||++|+..+.++     .|.+||+.++  .+...+..+...+
T Consensus       240 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~  319 (741)
T 1yr2_A          240 NYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQ  319 (741)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSC
T ss_pred             CCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCce
Confidence                388999877652  233333  334588999999999988777544     7999998776  3134454454444


Q ss_pred             EEEEEccCCCCCCCCCCcEEEEEEeC----CCeEEEEeCCCC--eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 008467          445 YTIRWSPTGSGTNNPNQQLILASASF----DSTVKLWDVELG--KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHI  518 (564)
Q Consensus       445 ~~i~~~p~~~~~~~~~~~~~l~s~s~----dg~i~iwd~~~~--~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~i  518 (564)
                      ....+ |++.         .|+..+.    ++.|.+||+.++  .....+..+...+..++|+ ++.++++...|+..+|
T Consensus       320 ~~~~~-~dg~---------~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l  388 (741)
T 1yr2_A          320 WDFVD-GVGD---------QLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQV  388 (741)
T ss_dssp             EEEEE-EETT---------EEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEE
T ss_pred             EEEEe-ccCC---------EEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEE
Confidence            44433 6654         2333333    456999999874  3333334444556778887 6677888888998777


Q ss_pred             EeCC-CCeEEEEEec--CCCEEEEEEccCCCEEEEEEcC----CcEEEEEe
Q 008467          519 WSLK-EGKIVKTYTG--NGGIFEVCWNKEGDKIAACFAN----HTVCVLDF  562 (564)
Q Consensus       519 w~~~-~~~~~~~~~~--~~~i~~~~w~~~g~~la~~~~~----~~v~v~~~  562 (564)
                      |.+. +|+.+..+..  .+.+..++|+|+|+.|+..+.+    +++.+||+
T Consensus       389 ~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~  439 (741)
T 1yr2_A          389 LAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDP  439 (741)
T ss_dssp             EEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEET
T ss_pred             EEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence            7654 4665665553  4568899999999988766543    46777775

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.58  E-value=1.1e-12  Score=128.67  Aligned_cols=253  Identities=9%  Similarity=-0.011  Sum_probs=172.5

Q ss_pred             CCCeEEEEECCCc-eeEeec------CCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEc-
Q 008467          295 YDGQARIWSTNGD-LKCTLS------KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW-  366 (564)
Q Consensus       295 ~dg~i~vw~~~~~-~~~~~~------~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~-  366 (564)
                      .++.|.++|.... ....+.      ........+.+. .+..+++...+++|.+||..+++.+..+.. ......+.+ 
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~   92 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFL   92 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEe
Confidence            3789999998643 332221      122345677774 344555666679999999999998887743 334555666 


Q ss_pred             CCCceEEEEeCCCeEEEEEcCCCceeeEecCCC-----cceEEEEECCCCCEEEEEe-CCCcEEEEeCCCCeeeeecccc
Q 008467          367 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-----GEVNCVKWDPTGSLLASCS-DDVTAKIWNMKQDKYVHDLREH  440 (564)
Q Consensus       367 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-----~~i~~v~~~~~~~~las~s-~dg~i~iwd~~~~~~~~~~~~~  440 (564)
                      .++..+++...++.|.+++..+.+....+....     .....+++ .+++++++.. .++.|.+||..+++.+..+...
T Consensus        93 ~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g  171 (328)
T 3dsm_A           93 SDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG  171 (328)
T ss_dssp             ETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS
T ss_pred             CCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC
Confidence            445555555578999999999887766655322     14556777 3455555544 4889999999998877766542


Q ss_pred             cccEEEEEEccCCCCCCCCCCcEEEEEEeCC----------CeEEEEeCCCCeEEEEEeCC-CCCEEEEEEcCCCCEEEE
Q 008467          441 SKEIYTIRWSPTGSGTNNPNQQLILASASFD----------STVKLWDVELGKLLYSLNGH-REPVYSLAFSPTGEYLAS  509 (564)
Q Consensus       441 ~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d----------g~i~iwd~~~~~~~~~~~~h-~~~i~~~~~spdg~~las  509 (564)
                      . ....+.++|++.         +++++..+          +.|.+||..+++....+... ......++|+||+++|.+
T Consensus       172 ~-~p~~i~~~~dG~---------l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv  241 (328)
T 3dsm_A          172 I-QPTSLVMDKYNK---------MWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYW  241 (328)
T ss_dssp             S-CBCCCEECTTSE---------EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEE
T ss_pred             C-CccceEEcCCCC---------EEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEE
Confidence            2 235667777653         44444443          78999999999887766532 235799999999999887


Q ss_pred             EeCCCcEEEEeCCCCeEEEE--Eec-CCCEEEEEEcc-CCCEEEEE----EcCCcEEEEEe
Q 008467          510 GSLDKSMHIWSLKEGKIVKT--YTG-NGGIFEVCWNK-EGDKIAAC----FANHTVCVLDF  562 (564)
Q Consensus       510 gs~dg~i~iw~~~~~~~~~~--~~~-~~~i~~~~w~~-~g~~la~~----~~~~~v~v~~~  562 (564)
                      +..  .|.+||..++++...  ... ......++++| +|+..++.    ..++.|.+||.
T Consensus       242 ~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~  300 (328)
T 3dsm_A          242 INN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSP  300 (328)
T ss_dssp             ESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECT
T ss_pred             Ecc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECC
Confidence            765  899999998876421  111 24588999999 45555665    56788999875

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.57  E-value=9e-12  Score=130.39  Aligned_cols=266  Identities=13%  Similarity=0.113  Sum_probs=189.7

Q ss_pred             CCCCEEEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECC--CcceeEEEeecccCe
Q 008467          285 GEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK--TEEWKQQFEFHSGPT  361 (564)
Q Consensus       285 ~~g~~l~sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~--~~~~~~~~~~~~~~~  361 (564)
                      +.+.++++...++.|.++|... +....+.. ...+.++.|+|+|+++++++.|+.|.+||+.  +++.+..+..... .
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~-P  242 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE-A  242 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE-E
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC-C
Confidence            3455677778889999999864 45555543 3356789999999999999999999999996  7777766655333 3


Q ss_pred             EEEEcC-----C-CceEEEEeCCCeEEEEEcCCCceeeEecC----------C-CcceEEEEECCCCCE-EEEEeCCCcE
Q 008467          362 LDVDWR-----N-NVSFATSSTDNMIYVCKIGENRPIKTFAG----------H-QGEVNCVKWDPTGSL-LASCSDDVTA  423 (564)
Q Consensus       362 ~~~~~~-----~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~----------h-~~~i~~v~~~~~~~~-las~s~dg~i  423 (564)
                      ..+.+.     + ...+++...++.+.++|..+.+++..+..          | ...+..+..++++.. +++...+|.|
T Consensus       243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v  322 (567)
T 1qks_A          243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI  322 (567)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeE
Confidence            445554     2 34556677789999999988888776542          1 125778888888665 5556678999


Q ss_pred             EEEeCCCCeee--eecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeC-----CCC-CE
Q 008467          424 KIWNMKQDKYV--HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG-----HRE-PV  495 (564)
Q Consensus       424 ~iwd~~~~~~~--~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----h~~-~i  495 (564)
                      .++|.......  ..+ ........+.|+|++.        ++++++..++.|.++|+.+++.+..+.-     |.. .+
T Consensus       323 ~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr--------~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~  393 (567)
T 1qks_A          323 LLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHR--------YFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGA  393 (567)
T ss_dssp             EEEETTCSSEEEEEEE-ECCSSEEEEEECTTSC--------EEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCE
T ss_pred             EEEecCCCccceeeee-eccccccCceECCCCC--------EEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccce
Confidence            99998765322  222 2334566788998875        4566666789999999999998776653     321 22


Q ss_pred             EEEEEcCCC-CEEEEEe-CCCcEEEEeCCC-------CeEEEEEecCC-CEEEEEEccCCCEEEEEEc-------CCcEE
Q 008467          496 YSLAFSPTG-EYLASGS-LDKSMHIWSLKE-------GKIVKTYTGNG-GIFEVCWNKEGDKIAACFA-------NHTVC  558 (564)
Q Consensus       496 ~~~~~spdg-~~lasgs-~dg~i~iw~~~~-------~~~~~~~~~~~-~i~~~~w~~~g~~la~~~~-------~~~v~  558 (564)
                      . + ++|++ ..++++. .++.|.+++..+       .+.+++....+ +-..+..+|+|++|.+...       ..+|.
T Consensus       394 ~-~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~  471 (567)
T 1qks_A          394 N-F-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVA  471 (567)
T ss_dssp             E-E-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEE
T ss_pred             e-e-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEE
Confidence            2 2 68884 4555554 468999999988       67888887643 3356889999999998763       34899


Q ss_pred             EEEee
Q 008467          559 VLDFR  563 (564)
Q Consensus       559 v~~~~  563 (564)
                      |||+.
T Consensus       472 v~d~~  476 (567)
T 1qks_A          472 VFDIK  476 (567)
T ss_dssp             EEEGG
T ss_pred             EEECC
Confidence            99974

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.56  E-value=2e-11  Score=121.54  Aligned_cols=246  Identities=9%  Similarity=-0.059  Sum_probs=156.0

Q ss_pred             EEEECCCCCEEEEEe----------CCCeEEEEECCC-ceeEeecCC-------CCCEEEEEeCCCCCEEEEeeC--CCc
Q 008467          280 TLDWNGEGTLLATGS----------YDGQARIWSTNG-DLKCTLSKH-------KGPIFSLKWNKKGDYLLTGSC--DKT  339 (564)
Q Consensus       280 ~l~~s~~g~~l~sg~----------~dg~i~vw~~~~-~~~~~~~~h-------~~~V~~l~~~~~~~~l~s~s~--D~~  339 (564)
                      .+++||||++++++.          .++.|.+||... .....+..-       ...-..+.|+|+|++|+.++.  +++
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~  149 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence            789999999998886          367899999753 333333211       122357899999999998874  578


Q ss_pred             EEEEECCCcceeEE-EeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEec-----CCCcc-eEEEEECCCCC
Q 008467          340 AIVWDVKTEEWKQQ-FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA-----GHQGE-VNCVKWDPTGS  412 (564)
Q Consensus       340 v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-----~h~~~-i~~v~~~~~~~  412 (564)
                      |.++| .+++.+.. +..... + .+.......|++.+.|+.+.+++. .++.+....     ....+ .....+.+++.
T Consensus       150 v~viD-~t~~~~~~~i~~~~~-~-~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  225 (373)
T 2mad_H          150 VGLVV-QGGSSDDQLLSSPTC-Y-HIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSG  225 (373)
T ss_pred             EEEEE-CCCCEEeEEcCCCce-E-EEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCC
Confidence            99999 99988776 543221 2 222233446777778899989988 665542211     11111 22345666665


Q ss_pred             EEEEEeCCCcEEEEeCCCCe--eeeecccccccEEEEEEccCCCC--CCCCCCcEEEEEEe---------CCCeEEEEeC
Q 008467          413 LLASCSDDVTAKIWNMKQDK--YVHDLREHSKEIYTIRWSPTGSG--TNNPNQQLILASAS---------FDSTVKLWDV  479 (564)
Q Consensus       413 ~las~s~dg~i~iwd~~~~~--~~~~~~~~~~~i~~i~~~p~~~~--~~~~~~~~~l~s~s---------~dg~i~iwd~  479 (564)
                      .++..+..+.+.+.|+.+..  .+..+...........|.|.+..  ..+++...+.++..         ..+.|.++|+
T Consensus       226 ~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~  305 (373)
T 2mad_H          226 RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTG  305 (373)
T ss_pred             EEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEEC
Confidence            54444577899999986542  22222111111112233333210  11222223333332         2468999999


Q ss_pred             CCCeEEEEEeCCCCCEEEEEEcCCCC-EEEEEe-CCCcEEEEeCCCCeEEEEE
Q 008467          480 ELGKLLYSLNGHREPVYSLAFSPTGE-YLASGS-LDKSMHIWSLKEGKIVKTY  530 (564)
Q Consensus       480 ~~~~~~~~~~~h~~~i~~~~~spdg~-~lasgs-~dg~i~iw~~~~~~~~~~~  530 (564)
                      .+++.+.++.. ......++|+|||+ .++++. .++.|.+||+.+++.+++.
T Consensus       306 ~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          306 LVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             CCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence            99999888863 33579999999999 777777 5899999999999998884

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.56  E-value=2.3e-11  Score=117.00  Aligned_cols=233  Identities=8%  Similarity=0.048  Sum_probs=169.5

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEe-ecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEE
Q 008467          276 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCT-LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF  354 (564)
Q Consensus       276 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  354 (564)
                      ..+.+++++++|+++++...++.|.+|+..+..... ...+...+.+++++++|..+++...++.|..||.. +.. ..+
T Consensus        15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~   92 (299)
T 2z2n_A           15 TGPYGITVSDKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEY   92 (299)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEE
T ss_pred             CCccceEECCCCCEEEEecCCCcEEEEcCCCCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEE
Confidence            568999999999988877778999999988544332 22345678999999999988887778889999865 221 111


Q ss_pred             eecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeee
Q 008467          355 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV  434 (564)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~  434 (564)
                      .                                       +......+.++++++++.++++...++.|.+||. ++...
T Consensus        93 ~---------------------------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~  132 (299)
T 2z2n_A           93 T---------------------------------------LPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR  132 (299)
T ss_dssp             E---------------------------------------CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE
T ss_pred             e---------------------------------------CCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE
Confidence            0                                       0112335678999999998888878889999998 44332


Q ss_pred             e-ecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEE-EeCCCCCEEEEEEcCCCCEEEEEeC
Q 008467          435 H-DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYS-LNGHREPVYSLAFSPTGEYLASGSL  512 (564)
Q Consensus       435 ~-~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~h~~~i~~~~~spdg~~lasgs~  512 (564)
                      . .+..+...+..+++.+++.         +.++...++.|..||. +++.... +......+..++++++|+++++...
T Consensus       133 ~~~~~~~~~~~~~i~~~~~g~---------l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~  202 (299)
T 2z2n_A          133 EYELPNKGSYPSFITLGSDNA---------LWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEII  202 (299)
T ss_dssp             EEECSSTTCCEEEEEECTTSC---------EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT
T ss_pred             EecCCCCCCCCceEEEcCCCC---------EEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccC
Confidence            2 2223445678899988764         4555666789999999 6665432 3334456889999999998887777


Q ss_pred             CCcEEEEeCCCCeEEEEEec---CCCEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467          513 DKSMHIWSLKEGKIVKTYTG---NGGIFEVCWNKEGDKIAACFANHTVCVLDF  562 (564)
Q Consensus       513 dg~i~iw~~~~~~~~~~~~~---~~~i~~~~w~~~g~~la~~~~~~~v~v~~~  562 (564)
                      ++.|.+|+. +++... +..   ...+..++++++|+..++...++.|.+||.
T Consensus       203 ~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          203 GNKIGRITT-SGEITE-FKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS  253 (299)
T ss_dssp             TTEEEEECT-TCCEEE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred             CceEEEECC-CCcEEE-EECCCCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence            889999999 776543 322   256899999999997777767788888874

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.56  E-value=4.4e-11  Score=115.09  Aligned_cols=275  Identities=11%  Similarity=0.027  Sum_probs=187.0

Q ss_pred             ccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeC
Q 008467          216 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY  295 (564)
Q Consensus       216 ~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~  295 (564)
                      ...+.++++.++|+++++...++.|.+|+.. +..         ..  .. .    ......+..+++.++|.+.++...
T Consensus        19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~---------~~--~~-~----~~~~~~~~~i~~~~~g~l~v~~~~   81 (300)
T 2qc5_A           19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRI---------KE--FE-V----PTPDAKVMCLIVSSLGDIWFTENG   81 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE---------EE--EE-C----SSTTCCEEEEEECTTSCEEEEETT
T ss_pred             CCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cce---------EE--EE-C----CCCCCcceeEEECCCCCEEEEecC
Confidence            4567899999999988887788999999865 321         00  00 0    112356889999999998887777


Q ss_pred             CCeEEEEECCCceeEe-ecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEE-EeecccCeEEEEcCC-CceE
Q 008467          296 DGQARIWSTNGDLKCT-LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ-FEFHSGPTLDVDWRN-NVSF  372 (564)
Q Consensus       296 dg~i~vw~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~  372 (564)
                      ++.|..|+..+..... +......+.++++.++|+.+++...++.|..||.. ++.... +......+..+.... ...+
T Consensus        82 ~~~v~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~  160 (300)
T 2qc5_A           82 ANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALW  160 (300)
T ss_dssp             TTEEEEECTTSCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEE
T ss_pred             CCeEEEECCCCCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEE
Confidence            8899999988655322 22244678999999999988887778899999987 554422 111223455555543 3455


Q ss_pred             EEEeCCCeEEEEEcCCCceee-EecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeee-ecccccccEEEEEEc
Q 008467          373 ATSSTDNMIYVCKIGENRPIK-TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH-DLREHSKEIYTIRWS  450 (564)
Q Consensus       373 ~~~~~d~~i~~~~~~~~~~~~-~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~-~~~~~~~~i~~i~~~  450 (564)
                      ++...++.|+.++. .+.... ....+...+.+++++++|.+.++....+.|.+|+. ++.... .+..+...+.++++.
T Consensus       161 v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d  238 (300)
T 2qc5_A          161 FTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAG  238 (300)
T ss_dssp             EEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC
T ss_pred             EEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEEC
Confidence            66666788888887 333322 22234456889999999998887777888999998 443322 233345567889998


Q ss_pred             cCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEE-EEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 008467          451 PTGSGTNNPNQQLILASASFDSTVKLWDVELGKLL-YSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK  522 (564)
Q Consensus       451 p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~  522 (564)
                      +++.         +.++...++.|..||.. ++.. ..+......+.+++++++|+++++.. . .|..++.+
T Consensus       239 ~~g~---------l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          239 KNSE---------IWFTEWGANQIGRITND-NTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             STTC---------EEEEETTTTEEEEECTT-SCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred             CCCC---------EEEeccCCCeEEEECCC-CcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence            8764         45555567899999984 5443 22333345678999999999777655 4 67777653

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.56  E-value=5.5e-12  Score=122.53  Aligned_cols=244  Identities=9%  Similarity=0.069  Sum_probs=160.0

Q ss_pred             CCccceEEEEECCCCCEEEE-------EECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC
Q 008467          214 GHTSEVCACAWSPAGSLLAS-------GSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE  286 (564)
Q Consensus       214 ~h~~~V~~~~~sp~~~~las-------gs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~  286 (564)
                      ..-....+++|++++.++++       +..++.|.+|+..++...         .  +..  .........+..++++++
T Consensus        15 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~---------~--~~~--~~~~~~~~~~~~i~~~~~   81 (314)
T 1pjx_A           15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT---------V--ICK--PEVNGYGGIPAGCQCDRD   81 (314)
T ss_dssp             CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEE---------E--EEC--CEETTEECCEEEEEECSS
T ss_pred             ccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEE---------E--EEe--cccCCCCCCCceEEEecC
Confidence            33455689999999998888       678899999997665321         0  000  000012245889999999


Q ss_pred             -CCEEEEEeCCCeEEEEECCCceeEe-ecC----CCCCEEEEEeCCCCCEEEEeeCC---------------CcEEEEEC
Q 008467          287 -GTLLATGSYDGQARIWSTNGDLKCT-LSK----HKGPIFSLKWNKKGDYLLTGSCD---------------KTAIVWDV  345 (564)
Q Consensus       287 -g~~l~sg~~dg~i~vw~~~~~~~~~-~~~----h~~~V~~l~~~~~~~~l~s~s~D---------------~~v~iwd~  345 (564)
                       |+++++.. .+.|.+|+..+..... ...    ....+.+++++++|+.+++...+               +.|..||.
T Consensus        82 ~g~l~v~~~-~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~  160 (314)
T 1pjx_A           82 ANQLFVADM-RLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT  160 (314)
T ss_dssp             SSEEEEEET-TTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT
T ss_pred             CCcEEEEEC-CCCEEEEeCCCCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECC
Confidence             77655544 4478889987554333 221    12347889999999877776554               33444443


Q ss_pred             CCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEEC----CCCCEE-EEEeCC
Q 008467          346 KTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWD----PTGSLL-ASCSDD  420 (564)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~----~~~~~l-as~s~d  420 (564)
                      . ++..                                          .+..+......++|+    |+++.| ++.+.+
T Consensus       161 ~-g~~~------------------------------------------~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~  197 (314)
T 1pjx_A          161 D-GQMI------------------------------------------QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPT  197 (314)
T ss_dssp             T-SCEE------------------------------------------EEEEEESSEEEEEEEECTTSCEEEEEEEETTT
T ss_pred             C-CCEE------------------------------------------EeccCCCCcceEEEecccCCCCCEEEEEECCC
Confidence            2 2111                                          111122345678899    999654 555668


Q ss_pred             CcEEEEeCC-CCe-----eeeeccccc-ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCC
Q 008467          421 VTAKIWNMK-QDK-----YVHDLREHS-KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHRE  493 (564)
Q Consensus       421 g~i~iwd~~-~~~-----~~~~~~~~~-~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~  493 (564)
                      +.|.+|+.. ++.     ....+..+. .....+++.++|.         ++++...++.|.+||..+++.+..+..+..
T Consensus       198 ~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~---------l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~  268 (314)
T 1pjx_A          198 KKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN---------LLVANWGSSHIEVFGPDGGQPKMRIRCPFE  268 (314)
T ss_dssp             TEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC---------EEEEEETTTEEEEECTTCBSCSEEEECSSS
T ss_pred             CeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCC---------EEEEEcCCCEEEEEcCCCCcEeEEEeCCCC
Confidence            899999976 333     222333333 4567889988774         566666788999999987776666666667


Q ss_pred             CEEEEEEcCCCCEEE-EEeCCCcEEEEeCCC
Q 008467          494 PVYSLAFSPTGEYLA-SGSLDKSMHIWSLKE  523 (564)
Q Consensus       494 ~i~~~~~spdg~~la-sgs~dg~i~iw~~~~  523 (564)
                      .+.+++|+|+|++|. +...++.|..|++..
T Consensus       269 ~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          269 KPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            899999999999554 455668899999864

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.55  E-value=2.7e-12  Score=126.21  Aligned_cols=291  Identities=12%  Similarity=0.078  Sum_probs=187.8

Q ss_pred             ECCCCCEEEEEEC-----CCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEe----
Q 008467          224 WSPAGSLLASGSG-----DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS----  294 (564)
Q Consensus       224 ~sp~~~~lasgs~-----D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~----  294 (564)
                      ..|+++.++....     ++.+.+.|..+.+..             .....    ...+ . ++++|||++++++.    
T Consensus        40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~-------------~~I~v----G~~P-~-va~spDG~~lyVan~~~~  100 (386)
T 3sjl_D           40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVI-------------GMIDG----GFLP-N-PVVADDGSFIAHASTVFS  100 (386)
T ss_dssp             CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEE-------------EEEEE----CSSC-E-EEECTTSSCEEEEEEEEE
T ss_pred             cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEE-------------EEEEC----CCCC-c-EEECCCCCEEEEEccccc
Confidence            3577776666554     678999998765421             11111    1122 3 89999999887765    


Q ss_pred             ------CCCeEEEEECCC-ceeEeecCC-------CCCEEEEEeCCCCCEEEEeeC--CCcEEEEECCCcceeEEEeecc
Q 008467          295 ------YDGQARIWSTNG-DLKCTLSKH-------KGPIFSLKWNKKGDYLLTGSC--DKTAIVWDVKTEEWKQQFEFHS  358 (564)
Q Consensus       295 ------~dg~i~vw~~~~-~~~~~~~~h-------~~~V~~l~~~~~~~~l~s~s~--D~~v~iwd~~~~~~~~~~~~~~  358 (564)
                            .++.|.+||... .....+.-.       ...-..+.|+|+|++++.+..  +++|.++|+.+++.+..+....
T Consensus       101 r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g  180 (386)
T 3sjl_D          101 RIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD  180 (386)
T ss_dssp             ETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS
T ss_pred             ccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC
Confidence                  367899999764 334443211       112356899999999988764  6899999999999888775432


Q ss_pred             cCeEEEEcCCCceEEEEeCCCeEEEEEcCC-CceeeEecCC----Ccce-EEEEE-CCCCCEEEEEeCCCcEEEEeCCCC
Q 008467          359 GPTLDVDWRNNVSFATSSTDNMIYVCKIGE-NRPIKTFAGH----QGEV-NCVKW-DPTGSLLASCSDDVTAKIWNMKQD  431 (564)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~~~h----~~~i-~~v~~-~~~~~~las~s~dg~i~iwd~~~~  431 (564)
                      .  ..+.......|++.+.||.+.+.++.. ++.+.....+    ...+ ....| .++|++++ .+.+|++.+.|+.+.
T Consensus       181 ~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~  257 (386)
T 3sjl_D          181 C--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSG  257 (386)
T ss_dssp             E--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTS
T ss_pred             c--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCC
Confidence            1  222233455677778899988888876 4443221111    1122 22455 36776554 566899999998765


Q ss_pred             ee--eeecc--c--------ccccEEEEEEccCCCCCCCCCCcEEEEEEe--------CCCeEEEEeCCCCeEEEEEeCC
Q 008467          432 KY--VHDLR--E--------HSKEIYTIRWSPTGSGTNNPNQQLILASAS--------FDSTVKLWDVELGKLLYSLNGH  491 (564)
Q Consensus       432 ~~--~~~~~--~--------~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s--------~dg~i~iwd~~~~~~~~~~~~h  491 (564)
                      ..  +..+.  .        .......++++|++.       .++++...        -.+.|.+.|+.+++.+.++.- 
T Consensus       258 ~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~-------~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-  329 (386)
T 3sjl_D          258 DAKFLPAVEALTEAERADGWRPGGWQQVAYHRALD-------RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-  329 (386)
T ss_dssp             SCEECCCEESSCHHHHHTTEEECSSSCEEEETTTT-------EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-
T ss_pred             cceeecceeccccccccccccCCCcceeeECCCCC-------eEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-
Confidence            42  22111  0        011112234444432       23333321        125799999999999888753 


Q ss_pred             CCCEEEEEEcCCCC-EEEEE-eCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccC
Q 008467          492 REPVYSLAFSPTGE-YLASG-SLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKE  544 (564)
Q Consensus       492 ~~~i~~~~~spdg~-~lasg-s~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~  544 (564)
                      ..++++|+|+||++ +|+++ ..++.|.++|..++++++++...+....|.+++|
T Consensus       330 g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d  384 (386)
T 3sjl_D          330 GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD  384 (386)
T ss_dssp             EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred             CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCceeEECCc
Confidence            23678999999996 66654 4589999999999999999988777778888876

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.52  E-value=1.9e-11  Score=118.04  Aligned_cols=228  Identities=14%  Similarity=0.202  Sum_probs=156.7

Q ss_pred             eEEEEECCC-CCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEee
Q 008467          278 VTTLDWNGE-GTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF  356 (564)
Q Consensus       278 V~~l~~s~~-g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~  356 (564)
                      --+..|+++ +.++++...++.|..|+..+.....+ .....+.+++++++|+++++ . ++.|.+||..++++......
T Consensus        15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~   91 (297)
T 3g4e_A           15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATV   91 (297)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEEC
T ss_pred             ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEec
Confidence            457789985 55677777789999999876544333 34577999999999995554 3 56899999887653321110


Q ss_pred             cccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCC---------CcEEEEe
Q 008467          357 HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD---------VTAKIWN  427 (564)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~d---------g~i~iwd  427 (564)
                                                    ....       ....++.++++|+|+++++...+         ....||.
T Consensus        92 ------------------------------~~~~-------~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~  134 (297)
T 3g4e_A           92 ------------------------------DNDK-------KNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYS  134 (297)
T ss_dssp             ------------------------------CTTC-------SSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEE
T ss_pred             ------------------------------CCCC-------CCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEE
Confidence                                          0000       12346789999999977755322         2345555


Q ss_pred             CCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeC--CCCeE-----EEEEeCCCCCEEEEEE
Q 008467          428 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV--ELGKL-----LYSLNGHREPVYSLAF  500 (564)
Q Consensus       428 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~--~~~~~-----~~~~~~h~~~i~~~~~  500 (564)
                      +.....+..+..+......++|+|++.        .++++.+.++.|.+|++  .++..     ...+..+...+..+++
T Consensus       135 ~d~~g~~~~~~~~~~~pngi~~spdg~--------~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~  206 (297)
T 3g4e_A          135 LFPDHHVKKYFDQVDISNGLDWSLDHK--------IFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCI  206 (297)
T ss_dssp             ECTTSCEEEEEEEESBEEEEEECTTSC--------EEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEE
T ss_pred             EECCCCEEEEeeccccccceEEcCCCC--------EEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEE
Confidence            543322222333334457899999875        35566677899999987  45543     2233333456789999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC-CCEEEEEEc-cCCCEEEEEEc
Q 008467          501 SPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWN-KEGDKIAACFA  553 (564)
Q Consensus       501 spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~-~~i~~~~w~-~~g~~la~~~~  553 (564)
                      +++|++.++....+.|.+|+..+|+++..+... ..+++++|. |+++.|.++..
T Consensus       207 d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          207 DAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             BTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             CCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence            999998888888889999999999998888765 568999998 89998877655

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.51  E-value=1.4e-10  Score=115.40  Aligned_cols=263  Identities=8%  Similarity=-0.014  Sum_probs=170.6

Q ss_pred             CCCCCEEEEEeC--CC---eEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEee----------CCCcEEEEECCC
Q 008467          284 NGEGTLLATGSY--DG---QARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGS----------CDKTAIVWDVKT  347 (564)
Q Consensus       284 s~~g~~l~sg~~--dg---~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s----------~D~~v~iwd~~~  347 (564)
                      .|++.++.+...  ..   .|.++|.. ++....+..-..+  .+.++|+|++++.+.          .+++|.+||+.+
T Consensus        29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t  106 (373)
T 2mad_H           29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT  106 (373)
T ss_pred             CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence            356666666543  22   78999975 4555555544445  899999999998876          367899999998


Q ss_pred             cceeEEEeec-------ccCeEEEEcCCCc--eEEEEeC-CCeEEEEEcCCCceeeE-ecCCCcceEEEEECCCC-CEEE
Q 008467          348 EEWKQQFEFH-------SGPTLDVDWRNNV--SFATSST-DNMIYVCKIGENRPIKT-FAGHQGEVNCVKWDPTG-SLLA  415 (564)
Q Consensus       348 ~~~~~~~~~~-------~~~~~~~~~~~~~--~~~~~~~-d~~i~~~~~~~~~~~~~-~~~h~~~i~~v~~~~~~-~~la  415 (564)
                      .+.+..+...       ......+.+.++.  .+++... ++.|.++| .+.+.+.. +...    .|+.+.|++ ..++
T Consensus       107 ~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~----~~~~~~~~~~~~~~  181 (373)
T 2mad_H          107 FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP----TCYHIHPGAPSTFY  181 (373)
T ss_pred             CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC----ceEEEEeCCCceEE
Confidence            8877766543       1122345555443  3333333 57899999 88887766 4321    124455555 4566


Q ss_pred             EEeCCCcEEEEeCCCCeeeeecc-----cccccE-EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe--EEEE
Q 008467          416 SCSDDVTAKIWNMKQDKYVHDLR-----EHSKEI-YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK--LLYS  487 (564)
Q Consensus       416 s~s~dg~i~iwd~~~~~~~~~~~-----~~~~~i-~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~  487 (564)
                      +.+.||.+.+||. +++.+....     ....++ ....+.+++.       . +++. +..+.|.+.|+..+.  .+..
T Consensus       182 ~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-------~-~~~~-~~~~~v~vid~~~~~~~v~~~  251 (373)
T 2mad_H          182 LLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSG-------R-IVWP-VYSGKILQADISAAGATNKAP  251 (373)
T ss_pred             EEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCC-------E-EEEE-cCCceEEEEeccCCcceEeee
Confidence            7778999999999 776553221     111111 1123333321       1 2333 367899999987543  2222


Q ss_pred             EeCC----------CCCEEEEEEcCCCCEEEEEeC----------CCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCC-
Q 008467          488 LNGH----------REPVYSLAFSPTGEYLASGSL----------DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGD-  546 (564)
Q Consensus       488 ~~~h----------~~~i~~~~~spdg~~lasgs~----------dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~-  546 (564)
                      +.-.          ......++++||++.|..+..          .+.|.++|+.++++++++........++|+|||+ 
T Consensus       252 ~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~  331 (373)
T 2mad_H          252 IDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGP  331 (373)
T ss_pred             eeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCe
Confidence            2110          122445889999988776543          3579999999999999998777789999999999 


Q ss_pred             EEEEEE-cCCcEEEEEee
Q 008467          547 KIAACF-ANHTVCVLDFR  563 (564)
Q Consensus       547 ~la~~~-~~~~v~v~~~~  563 (564)
                      ++.++. .++.|.|||.+
T Consensus       332 ~l~v~~~~~~~V~ViD~~  349 (373)
T 2mad_H          332 DLYALSAGTEVLHIYDAG  349 (373)
T ss_pred             EEEEEcCCCCeEEEEECC
Confidence            677765 58899999975

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.51  E-value=1.9e-11  Score=123.31  Aligned_cols=237  Identities=14%  Similarity=0.085  Sum_probs=163.3

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCC--cEEEEECCCcceeEE
Q 008467          276 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK--TAIVWDVKTEEWKQQ  353 (564)
Q Consensus       276 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~--~v~iwd~~~~~~~~~  353 (564)
                      .....|+|+++|+++++...++.|++|+..+.....+........ ++|+++++.|+++..++  .|.+|+..++.....
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~  209 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTR  209 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEE
Confidence            457899999999988888888999999988654443322222233 89999999999888766  688887654432111


Q ss_pred             EeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecC-CCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCe
Q 008467          354 FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG-HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK  432 (564)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~  432 (564)
                      +                                      ..+.. ....+.+++++|++..|+.+..++.|+.||..++.
T Consensus       210 ~--------------------------------------g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~  251 (409)
T 3hrp_A          210 I--------------------------------------GQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE  251 (409)
T ss_dssp             E--------------------------------------EECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC
T ss_pred             e--------------------------------------eeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC
Confidence            1                                      00011 23456778999954444457778899999988765


Q ss_pred             eeee----cccccccE-E-EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCC--------------
Q 008467          433 YVHD----LREHSKEI-Y-TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR--------------  492 (564)
Q Consensus       433 ~~~~----~~~~~~~i-~-~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~--------------  492 (564)
                      ....    ..++.... . .++|+|.+.        .++++-..++.|+.|+... . +..+.++.              
T Consensus       252 ~~~~~~~~~~g~~~~~P~~~ia~~p~~g--------~lyv~d~~~~~I~~~~~~g-~-~~~~~g~~~~~g~~dg~~~~~~  321 (409)
T 3hrp_A          252 VTLIKQLELSGSLGTNPGPYLIYYFVDS--------NFYMSDQNLSSVYKITPDG-E-CEWFCGSATQKTVQDGLREEAL  321 (409)
T ss_dssp             EEEEEECCCCSCCCCSSCCEEEEETTTT--------EEEEEETTTTEEEEECTTC-C-EEEEEECTTCCSCBCEEGGGCB
T ss_pred             EEEEecccccCCCCCCccccEEEeCCCC--------EEEEEeCCCCEEEEEecCC-C-EEEEEeCCCCCCcCCCcccccE
Confidence            3221    11222222 2 888888532        3566677789999999764 3 23333322              


Q ss_pred             -CCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEEEEEecC----------------CCEEEEEEccCCCEEEEEEcC
Q 008467          493 -EPVYSLAFSPTGEYLASGS-LDKSMHIWSLKEGKIVKTYTGN----------------GGIFEVCWNKEGDKIAACFAN  554 (564)
Q Consensus       493 -~~i~~~~~spdg~~lasgs-~dg~i~iw~~~~~~~~~~~~~~----------------~~i~~~~w~~~g~~la~~~~~  554 (564)
                       .....++|+|+|+++++-+ .+++|+.|++.+|.+. ++.+.                .....++++++|+.+++-..+
T Consensus       322 ~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n  400 (409)
T 3hrp_A          322 FAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWG  400 (409)
T ss_dssp             CSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTT
T ss_pred             eCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCC
Confidence             3478999999999888887 8899999998888754 33332                247899999999888888889


Q ss_pred             CcEEEEEe
Q 008467          555 HTVCVLDF  562 (564)
Q Consensus       555 ~~v~v~~~  562 (564)
                      ++|+.+++
T Consensus       401 ~~Ir~i~~  408 (409)
T 3hrp_A          401 KAIRKYAV  408 (409)
T ss_dssp             CEEEEEEE
T ss_pred             CeEEEEEe
Confidence            99988875

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.50  E-value=3.1e-12  Score=139.95  Aligned_cols=238  Identities=13%  Similarity=0.079  Sum_probs=157.6

Q ss_pred             CeEEEEECCCCCEEEEEeCC-----CeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCc------------
Q 008467          277 DVTTLDWNGEGTLLATGSYD-----GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKT------------  339 (564)
Q Consensus       277 ~V~~l~~s~~g~~l~sg~~d-----g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~------------  339 (564)
                      .+..++|||||++|+.++.+     ..|++|+..+........+...+.+++|+|+ +.|+.++.|+.            
T Consensus       164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~  242 (741)
T 1yr2_A          164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYN  242 (741)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCC
T ss_pred             EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCC
Confidence            57889999999999987654     3699999876543322222222357899999 99988887654            


Q ss_pred             --EEEEECCCccee--EEEeecc--cCeEEEEcCCCce-EEEEeC-----CCeEEEEEcCCC--ceeeEecCCCcceEEE
Q 008467          340 --AIVWDVKTEEWK--QQFEFHS--GPTLDVDWRNNVS-FATSST-----DNMIYVCKIGEN--RPIKTFAGHQGEVNCV  405 (564)
Q Consensus       340 --v~iwd~~~~~~~--~~~~~~~--~~~~~~~~~~~~~-~~~~~~-----d~~i~~~~~~~~--~~~~~~~~h~~~i~~v  405 (564)
                        |++|++.++...  ..+....  ..+..+.|.++.. ++..+.     ...|+++++..+  .+...+..+...+...
T Consensus       243 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~  322 (741)
T 1yr2_A          243 QTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF  322 (741)
T ss_dssp             CEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE
T ss_pred             CEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE
Confidence              889998776532  2232222  2366778876653 333332     348999998765  3145555555555444


Q ss_pred             EECCCCCEEEEEeCC----CcEEEEeCCCC--eeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeC
Q 008467          406 KWDPTGSLLASCSDD----VTAKIWNMKQD--KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV  479 (564)
Q Consensus       406 ~~~~~~~~las~s~d----g~i~iwd~~~~--~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~  479 (564)
                      . +|+|+.|+..+++    +.|.+||+.+.  .....+..+...+..+.|.. +         .++++...|+..+||.+
T Consensus       323 ~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~-~---------~lv~~~~~dg~~~l~~~  391 (741)
T 1yr2_A          323 V-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAG-N---------RLFASYIHDAKSQVLAF  391 (741)
T ss_dssp             E-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEB-T---------EEEEEEEETTEEEEEEE
T ss_pred             E-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEEC-C---------EEEEEEEECCEEEEEEE
Confidence            3 4899988887764    45999998874  33333334444566677752 2         37788888998888755


Q ss_pred             C-CCeEEEEEeC-CCCCEEEEEEcCCCCEEEEE----eCCCcEEEEeCCCCeE
Q 008467          480 E-LGKLLYSLNG-HREPVYSLAFSPTGEYLASG----SLDKSMHIWSLKEGKI  526 (564)
Q Consensus       480 ~-~~~~~~~~~~-h~~~i~~~~~spdg~~lasg----s~dg~i~iw~~~~~~~  526 (564)
                      . .++.+..+.. +...|..++++|+++.|+..    ...++|++||+.+++.
T Consensus       392 ~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          392 DLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT  444 (741)
T ss_dssp             ETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred             eCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            4 4666666654 35668899999999866532    2347899999988773

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.46  E-value=1e-10  Score=114.34  Aligned_cols=226  Identities=11%  Similarity=0.044  Sum_probs=151.5

Q ss_pred             eEEEEECCC-CCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEee
Q 008467          278 VTTLDWNGE-GTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF  356 (564)
Q Consensus       278 V~~l~~s~~-g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~  356 (564)
                      .....|+|+ +.++++...++.|..|+..+.....+. ....+.++.|+++|+++++. . ..|.+||+.++++......
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~-~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~~~  127 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTVHA-LPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHAEL  127 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE-CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEECS
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE-CCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEeeC
Confidence            456789997 456667777899999998765444333 35679999999999877654 3 4588999877653221100


Q ss_pred             cccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC------CCcEEEEeCCC
Q 008467          357 HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD------DVTAKIWNMKQ  430 (564)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~------dg~i~iwd~~~  430 (564)
                                                    ...       .....++.++++|+|+++++...      .+.|..++  +
T Consensus       128 ------------------------------~~~-------~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~  168 (326)
T 2ghs_A          128 ------------------------------ESD-------LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--K  168 (326)
T ss_dssp             ------------------------------STT-------CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--T
T ss_pred             ------------------------------CCC-------CCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--C
Confidence                                          000       01235778999999998776542      23455555  3


Q ss_pred             CeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC--CC-e-----EEEEEeCCCCCEEEEEEcC
Q 008467          431 DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE--LG-K-----LLYSLNGHREPVYSLAFSP  502 (564)
Q Consensus       431 ~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~--~~-~-----~~~~~~~h~~~i~~~~~sp  502 (564)
                      ++. ..+..+......++|+|++.        .+.++.+.++.|.+||+.  ++ .     ....+......+..+++++
T Consensus       169 g~~-~~~~~~~~~~~~i~~s~dg~--------~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~  239 (326)
T 2ghs_A          169 GKV-TKLFADISIPNSICFSPDGT--------TGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA  239 (326)
T ss_dssp             TEE-EEEEEEESSEEEEEECTTSC--------EEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT
T ss_pred             CcE-EEeeCCCcccCCeEEcCCCC--------EEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECC
Confidence            433 22323334567899999874        244555667899999985  55 3     2333333345578899999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEEecCC-CEEEEEEc-cCCCEEEEEEcCC
Q 008467          503 TGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN-KEGDKIAACFANH  555 (564)
Q Consensus       503 dg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~-~i~~~~w~-~~g~~la~~~~~~  555 (564)
                      +|.+.++...++.|.+|+. +++.+..+.... .+.+++|+ ++++.|.++...+
T Consensus       240 ~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          240 EGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE  293 (326)
T ss_dssp             TSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred             CCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence            9998887777788999998 677777776544 58999998 8998887665543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.42  E-value=8.2e-11  Score=117.78  Aligned_cols=264  Identities=10%  Similarity=0.056  Sum_probs=173.4

Q ss_pred             CcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEe----------CCCeEEEEECCC-
Q 008467          238 STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS----------YDGQARIWSTNG-  306 (564)
Q Consensus       238 ~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~----------~dg~i~vw~~~~-  306 (564)
                      +.|.+.|..+.+..             .....    ...+  .++++|||++++++.          .++.|.++|... 
T Consensus        99 ~~VsVID~~t~~vv-------------~~I~v----G~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           99 TQQFVIDGSTGRIL-------------GMTDG----GFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             EEEEEEETTTTEEE-------------EEEEE----CSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CeEEEEECCCCEEE-------------EEEEC----CCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            68999998765421             11111    1123  789999999888876          367899999754 


Q ss_pred             ceeEeecCC-------CCCEEEEEeCCCCCEEEEeeC--CCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeC
Q 008467          307 DLKCTLSKH-------KGPIFSLKWNKKGDYLLTGSC--DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSST  377 (564)
Q Consensus       307 ~~~~~~~~h-------~~~V~~l~~~~~~~~l~s~s~--D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (564)
                      +....+.--       ......+.|+|+|++++.+..  +++|.+.|+.+++.+..+.....  ..+.......|++.+.
T Consensus       160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~--~~~~p~g~~~~v~~~~  237 (426)
T 3c75_H          160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC--YHIFPASPTVFYMNCR  237 (426)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEET
T ss_pred             cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc--eeeccCCCcEEEEEcC
Confidence            444443211       122356889999999998874  57899999999998887764321  2222223456777778


Q ss_pred             CCeEEEEEcCCCceeeE----ecCCCcc-eEEEEECCCCCEEEEEeCCCcEEEEeCCCCeee--eecc-------c---c
Q 008467          378 DNMIYVCKIGENRPIKT----FAGHQGE-VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV--HDLR-------E---H  440 (564)
Q Consensus       378 d~~i~~~~~~~~~~~~~----~~~h~~~-i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~--~~~~-------~---~  440 (564)
                      |+.+.+.+...++....    +.-...+ ...+.+.+++..++..+..+.+.+.|.......  ..+.       .   .
T Consensus       238 dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~  317 (426)
T 3c75_H          238 DGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWR  317 (426)
T ss_dssp             TSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEE
T ss_pred             CCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccc
Confidence            88887777754443321    1111111 124568999888777788899999998654321  1110       0   0


Q ss_pred             cccEEEEEEccCCCCCCCCCCcEEEEEEe---------CCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCC-EEEEE
Q 008467          441 SKEIYTIRWSPTGSGTNNPNQQLILASAS---------FDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGE-YLASG  510 (564)
Q Consensus       441 ~~~i~~i~~~p~~~~~~~~~~~~~l~s~s---------~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~-~lasg  510 (564)
                      ......++++|++.        .++++..         ..+.|.++|..+.+.+.++... .....++|+|||+ +++++
T Consensus       318 p~g~~~va~s~dg~--------rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~  388 (426)
T 3c75_H          318 PGGWQQTAYHRQSD--------RIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYAL  388 (426)
T ss_dssp             ECSSSCEEEEGGGT--------EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEE
T ss_pred             cCCceeeEEcCCCC--------EEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEE
Confidence            01111256677653        2333322         1357999999999999888532 2478999999999 88888


Q ss_pred             e-CCCcEEEEeCCCCeEEEEEe
Q 008467          511 S-LDKSMHIWSLKEGKIVKTYT  531 (564)
Q Consensus       511 s-~dg~i~iw~~~~~~~~~~~~  531 (564)
                      . .++.|.++|+.+++.++++.
T Consensus       389 n~~s~~VsVID~~t~kvv~tI~  410 (426)
T 3c75_H          389 SAGTQTLHIYDAATGEELRSVD  410 (426)
T ss_dssp             ETTTTEEEEEETTTCCEEEEEC
T ss_pred             cCCCCeEEEEECCCCCEEEEec
Confidence            7 58999999999999999873

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.42  E-value=5.4e-12  Score=124.58  Aligned_cols=181  Identities=12%  Similarity=0.072  Sum_probs=133.4

Q ss_pred             CEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecC
Q 008467          318 PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG  397 (564)
Q Consensus       318 ~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~  397 (564)
                      ++..|++++....+++|+.+ .+++|++....-.  +.  ..                  .+.        ..+.... .
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~--~~--~~------------------~~~--------~~~~~~~-~   86 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDH--IT--SD------------------STP--------LTFKWEK-E   86 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHH--HH--SS------------------SCC--------CCCSEEE-E
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhh--hc--cc------------------ccc--------ccceEEe-e
Confidence            67889999999999999987 4556986543200  00  00                  000        0111111 2


Q ss_pred             CCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEE
Q 008467          398 HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW  477 (564)
Q Consensus       398 h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iw  477 (564)
                      +.+ |..++|  ++++|+++ .++.|++||+.+.........|...+.++.+.+.           -+++++.||.|.+|
T Consensus        87 lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p-----------~~av~~~dG~L~v~  151 (388)
T 1xip_A           87 IPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN-----------TLVILNSVNDLSAL  151 (388)
T ss_dssp             CTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS-----------EEEEEETTSEEEEE
T ss_pred             CCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC-----------CEEEEECCCCEEEE
Confidence            455 899999  99999999 8899999999876665566677778888776542           17788999999999


Q ss_pred             eCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE--EEEE------e----cCCCEEEEEEccCC
Q 008467          478 DVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI--VKTY------T----GNGGIFEVCWNKEG  545 (564)
Q Consensus       478 d~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~--~~~~------~----~~~~i~~~~w~~~g  545 (564)
                      |+..+....    +...|.+++|||+|  ++.|..||.|++|+...+.+  .+++      .    +...|.+++|.+++
T Consensus       152 dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~  225 (388)
T 1xip_A          152 DLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ  225 (388)
T ss_dssp             ETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS
T ss_pred             EccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCC
Confidence            999877653    34589999999999  78899999999999888776  5566      2    24558999999999


Q ss_pred             CEEEEE
Q 008467          546 DKIAAC  551 (564)
Q Consensus       546 ~~la~~  551 (564)
                      .+|++=
T Consensus       226 ~flv~y  231 (388)
T 1xip_A          226 DFLAVF  231 (388)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            988753

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.41  E-value=8.6e-11  Score=113.80  Aligned_cols=230  Identities=9%  Similarity=0.037  Sum_probs=153.8

Q ss_pred             CeEEEEECCCCC-EEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEe
Q 008467          277 DVTTLDWNGEGT-LLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE  355 (564)
Q Consensus       277 ~V~~l~~s~~g~-~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~  355 (564)
                      ......|+++|+ +++++..++.|..|+..+.. ..+..+...+.++.++++|+.+++...++.|.+|+.. +.......
T Consensus        46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~-~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~  123 (305)
T 3dr2_A           46 WSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTV-DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVG  123 (305)
T ss_dssp             SEEEEEEEGGGTEEEEEETTTTEEEEEETTSCE-EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEC
T ss_pred             CccCCeEeCCCCEEEEEECCCCEEEEEeCCCCE-EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEe
Confidence            356788999998 67777788999999987653 4455566778999999999976666666889999875 43221100


Q ss_pred             ecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecC-CCcceEEEEECCCCCEEEE----EeC-----------
Q 008467          356 FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG-HQGEVNCVKWDPTGSLLAS----CSD-----------  419 (564)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-h~~~i~~v~~~~~~~~las----~s~-----------  419 (564)
                      .                                      ..+ ....++.++++|+|++++|    |..           
T Consensus       124 ~--------------------------------------~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~  165 (305)
T 3dr2_A          124 R--------------------------------------YAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPE  165 (305)
T ss_dssp             E--------------------------------------ETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCS
T ss_pred             c--------------------------------------cCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccc
Confidence            0                                      000 0124567889999998886    332           


Q ss_pred             --CCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC------CeEEEEeCCCCeEE--EEE-
Q 008467          420 --DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD------STVKLWDVELGKLL--YSL-  488 (564)
Q Consensus       420 --dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d------g~i~iwd~~~~~~~--~~~-  488 (564)
                        .+.|..||..+++.....  .......++|+|++.         .|..+...      +.|.+|++..+...  ..+ 
T Consensus       166 ~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~---------~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~  234 (305)
T 3dr2_A          166 LAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQ---------TLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFA  234 (305)
T ss_dssp             SSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSS---------EEEEEECCC---CCCEEEEEEEETTEEEEEEEEE
T ss_pred             cCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCC---------EEEEEecCCcCCCCCEEEEEEecCCCccCCeEEE
Confidence              245777776555543322  334557899999875         34444443      78999998755411  111 


Q ss_pred             eCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467          489 NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLD  561 (564)
Q Consensus       489 ~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~  561 (564)
                      .........++++++|++.++. .+| |.+|+. +|+.+..+.....+..++|+++++.|.++..++ +..++
T Consensus       235 ~~~~~~pdgi~~d~~G~lwv~~-~~g-v~~~~~-~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~~-l~~~~  303 (305)
T 3dr2_A          235 SVPDGLPDGFCVDRGGWLWSSS-GTG-VCVFDS-DGQLLGHIPTPGTASNCTFDQAQQRLFITGGPC-LWMLP  303 (305)
T ss_dssp             CCSSSCCCSEEECTTSCEEECC-SSE-EEEECT-TSCEEEEEECSSCCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred             ECCCCCCCeEEECCCCCEEEec-CCc-EEEECC-CCCEEEEEECCCceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence            1122334678999999965544 444 999998 577777777666788999999999999887764 44443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.39  E-value=1.8e-11  Score=120.68  Aligned_cols=257  Identities=9%  Similarity=0.042  Sum_probs=167.0

Q ss_pred             CCeEEEEECCCCCEEEEEeC--CCeEEEEEC-CCceeE------eecCCCCCEEEEEeCCCCCEEEEeeC-----CCcEE
Q 008467          276 KDVTTLDWNGEGTLLATGSY--DGQARIWST-NGDLKC------TLSKHKGPIFSLKWNKKGDYLLTGSC-----DKTAI  341 (564)
Q Consensus       276 ~~V~~l~~s~~g~~l~sg~~--dg~i~vw~~-~~~~~~------~~~~h~~~V~~l~~~~~~~~l~s~s~-----D~~v~  341 (564)
                      ..+..++++++|+++++...  ++.++||.. ++.+..      ....|-..+.+++++++++.+++-..     +..|.
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~   96 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV   96 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence            35789999999999988642  343555544 444321      11234568999999999876555433     57899


Q ss_pred             EEECCCcceeEEEeeccc------CeEEEEcC--CCceEEEEe---CCCeEEEEEcCCCceeeEecCCCcceE-EEEECC
Q 008467          342 VWDVKTEEWKQQFEFHSG------PTLDVDWR--NNVSFATSS---TDNMIYVCKIGENRPIKTFAGHQGEVN-CVKWDP  409 (564)
Q Consensus       342 iwd~~~~~~~~~~~~~~~------~~~~~~~~--~~~~~~~~~---~d~~i~~~~~~~~~~~~~~~~h~~~i~-~v~~~~  409 (564)
                      +||+.++++...+.....      ...++...  ....+++..   .++.|++|+..+++..+.+.+|..... ...+.+
T Consensus        97 ~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~  176 (343)
T 2qe8_A           97 AWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVI  176 (343)
T ss_dssp             EEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEE
T ss_pred             EEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeE
Confidence            999999987777664321      12344443  345566665   678999999988777666665532211 133445


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCC-eEEEEeCC---CCe--
Q 008467          410 TGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS-TVKLWDVE---LGK--  483 (564)
Q Consensus       410 ~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg-~i~iwd~~---~~~--  483 (564)
                      +|..+.+.+.+++++.|..              .+..++|+|++.         .|..+..++ .|..++..   .+.  
T Consensus       177 ~g~~~~~~~~~g~~~~~~~--------------~~~gia~s~dg~---------~ly~~~~~~~~l~~~~~~~~~~~~~~  233 (343)
T 2qe8_A          177 DGVPVQIGQPDGTVIRPHL--------------GVNGIVLDAENE---------WLYLSPMHSTSMYRIKSADLSNLQLT  233 (343)
T ss_dssp             TTEECBEECTTSCEECCCC--------------CEEEEEECTTSC---------EEEEEESSCSEEEEEEHHHHTCTTCC
T ss_pred             CCEEEEeccCCCceeceec--------------ccceeEeccCCC---------EEEEEeCCCCeEEEEEHHHhcCCCCC
Confidence            6777777888888876641              246799999875         455555555 44444421   110  


Q ss_pred             ---EE--EEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec--CCCEEEEEEccCCCEEEEEEcCC
Q 008467          484 ---LL--YSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG--NGGIFEVCWNKEGDKIAACFANH  555 (564)
Q Consensus       484 ---~~--~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~--~~~i~~~~w~~~g~~la~~~~~~  555 (564)
                         ..  ....++......++++++|.++++...++.|.+|+..+|++......  -..+.+++++++|+.++++...+
T Consensus       234 ~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~  312 (343)
T 2qe8_A          234 DAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLH  312 (343)
T ss_dssp             HHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGG
T ss_pred             hhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccc
Confidence               00  01112333456799999999999999999999999866775443332  23478999999999887776443

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.39  E-value=1.4e-10  Score=114.04  Aligned_cols=267  Identities=9%  Similarity=0.026  Sum_probs=172.9

Q ss_pred             ECCCCCEEEEEeC-----CCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEee----------CCCcEEEEECC
Q 008467          283 WNGEGTLLATGSY-----DGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGS----------CDKTAIVWDVK  346 (564)
Q Consensus       283 ~s~~g~~l~sg~~-----dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s----------~D~~v~iwd~~  346 (564)
                      ..|++..+.+...     ++.|.+.|.. ++....+..-..|  .+.++|+|++++.++          .++.|.+||..
T Consensus        40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~  117 (386)
T 3sjl_D           40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV  117 (386)
T ss_dssp             CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred             cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence            4678888777765     6799999975 4555566554556  399999999988775          36789999999


Q ss_pred             CcceeEEEeecc-------cCeEEEEcC--CCceEEEEe-CCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEE
Q 008467          347 TEEWKQQFEFHS-------GPTLDVDWR--NNVSFATSS-TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLAS  416 (564)
Q Consensus       347 ~~~~~~~~~~~~-------~~~~~~~~~--~~~~~~~~~-~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las  416 (564)
                      +.+.+..+....       .....+.+.  ....+++.. .++.|.++|..+.+.+.++.-..  . ...+....+.+++
T Consensus       118 t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~  194 (386)
T 3sjl_D          118 TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFM  194 (386)
T ss_dssp             TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEE
T ss_pred             CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeEE
Confidence            999888776532       112233343  333445543 37899999999998887774321  1 1223223456677


Q ss_pred             EeCCCcEEEEeCCC-Ceeeeecccc----cccEE-EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe--EEEEE
Q 008467          417 CSDDVTAKIWNMKQ-DKYVHDLREH----SKEIY-TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK--LLYSL  488 (564)
Q Consensus       417 ~s~dg~i~iwd~~~-~~~~~~~~~~----~~~i~-~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~  488 (564)
                      .+.||++-+.++.+ ++.......+    ..++. ...|.+       +++..+  -.+.+|+|.+.|+..+.  .+..+
T Consensus       195 ~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~-------~dG~~~--~vs~~g~V~v~d~~~~~~~v~~~~  265 (386)
T 3sjl_D          195 HCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQ-------KAGRLV--WPTYTGKIHQIDLSSGDAKFLPAV  265 (386)
T ss_dssp             EETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEET-------TTTEEE--EEBTTSEEEEEECTTSSCEECCCE
T ss_pred             ECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEc-------CCCcEE--EEeCCCEEEEEECCCCcceeecce
Confidence            78888888888875 4432211100    01111 012211       122222  35568999999997553  22222


Q ss_pred             e---------C-CCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCC-E
Q 008467          489 N---------G-HREPVYSLAFSPTGEYLASGSL----------DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGD-K  547 (564)
Q Consensus       489 ~---------~-h~~~i~~~~~spdg~~lasgs~----------dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~-~  547 (564)
                      .         + ....+..++++|+++.|.....          .+.|.++|++++++++.+.....++.+++++||+ +
T Consensus       266 ~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~  345 (386)
T 3sjl_D          266 EALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPL  345 (386)
T ss_dssp             ESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCE
T ss_pred             eccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeE
Confidence            1         0 0112335788999988876542          2579999999999999988777788999999997 6


Q ss_pred             EEEE-EcCCcEEEEEee
Q 008467          548 IAAC-FANHTVCVLDFR  563 (564)
Q Consensus       548 la~~-~~~~~v~v~~~~  563 (564)
                      |.++ ..++.|.|||..
T Consensus       346 ly~tn~~~~~VsViD~~  362 (386)
T 3sjl_D          346 LYALSTGDKTLYIHDAE  362 (386)
T ss_dssp             EEEEETTTTEEEEEETT
T ss_pred             EEEEcCCCCeEEEEECC
Confidence            6654 448899999964

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.38  E-value=1.3e-11  Score=121.85  Aligned_cols=165  Identities=11%  Similarity=0.071  Sum_probs=128.6

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEECCCc----------e-eEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEEC
Q 008467          277 DVTTLDWNGEGTLLATGSYDGQARIWSTNGD----------L-KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV  345 (564)
Q Consensus       277 ~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~----------~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~  345 (564)
                      .+..+++++...++++|+.++ +++|+...-          . ......+.+ |+.|+|  ++++|+++ .++.|++||+
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv  113 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL  113 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence            588899999999999999985 455974311          1 112234666 999999  88999998 8899999999


Q ss_pred             CCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEE
Q 008467          346 KTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI  425 (564)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~i  425 (564)
                      .+.........+..++.++.+.... ++++..||.+++|++.......    +...|+|++|||+|  ++.|..||++++
T Consensus       114 ~sl~~~~~~~~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~  186 (388)
T 1xip_A          114 EELSEFRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQS  186 (388)
T ss_dssp             SSTTCEEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEEE
T ss_pred             hhhhccCccceeecceeeEEecCCC-EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEEE
Confidence            8776555566666777787776554 8889999999999998776543    45689999999999  678999999999


Q ss_pred             EeCCCCee--eeec------c---cccccEEEEEEccCC
Q 008467          426 WNMKQDKY--VHDL------R---EHSKEIYTIRWSPTG  453 (564)
Q Consensus       426 wd~~~~~~--~~~~------~---~~~~~i~~i~~~p~~  453 (564)
                      |+......  ..++      .   +|...|.+|.|.+++
T Consensus       187 ~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~  225 (388)
T 1xip_A          187 FAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ  225 (388)
T ss_dssp             EEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS
T ss_pred             EcCCCccccccceecCCcccccccCCCeeEEEEEEecCC
Confidence            98877664  4444      2   367889999999865

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.38  E-value=2.2e-11  Score=131.90  Aligned_cols=235  Identities=14%  Similarity=0.157  Sum_probs=154.7

Q ss_pred             CCCCEEEEEeCCCCCEEEE-----eeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCC-----------
Q 008467          315 HKGPIFSLKWNKKGDYLLT-----GSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTD-----------  378 (564)
Q Consensus       315 h~~~V~~l~~~~~~~~l~s-----~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----------  378 (564)
                      |...+.+++|||+|++|+-     |+...+|++||+.+++.+... ........+.|.++..|+.++.+           
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~WsDg~~l~y~~~~~~~~~~~~~~~  205 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWLGNEGFFYSSYDKPDGSELSART  205 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEETTTEEEEEESSCCC-------C
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEeCCCEEEEEEecCcccccccccC
Confidence            5567888999999998873     333357999999999865431 11111234567744556555554           


Q ss_pred             --CeEEEEEcCCCce--eeEec--C-CCcceEEEEECCCCCEEEEEeC----CCcEEEEeCCCCe-eeeecccccccEEE
Q 008467          379 --NMIYVCKIGENRP--IKTFA--G-HQGEVNCVKWDPTGSLLASCSD----DVTAKIWNMKQDK-YVHDLREHSKEIYT  446 (564)
Q Consensus       379 --~~i~~~~~~~~~~--~~~~~--~-h~~~i~~v~~~~~~~~las~s~----dg~i~iwd~~~~~-~~~~~~~~~~~i~~  446 (564)
                        ..|++|++++...  ...+.  . |...+..+.|+|||++|+..+.    +..|.+||+.++. ....+..+......
T Consensus       206 ~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~  285 (693)
T 3iuj_A          206 DQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVS  285 (693)
T ss_dssp             CCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEE
T ss_pred             CCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEE
Confidence              3489999887642  33333  3 4445788999999998754332    3488999987653 33445555554444


Q ss_pred             EEEccCCCCCCCCCCcEEEEEEeCC---CeEEEEeCCCCeE--EEEEeCCCCCEEEEEEcCCCCEEEEEeCCC---cEEE
Q 008467          447 IRWSPTGSGTNNPNQQLILASASFD---STVKLWDVELGKL--LYSLNGHREPVYSLAFSPTGEYLASGSLDK---SMHI  518 (564)
Q Consensus       447 i~~~p~~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~--~~~~~~h~~~i~~~~~spdg~~lasgs~dg---~i~i  518 (564)
                      . |++++.        .+++....+   +.|..||+.++..  ...+..|...+.  .|+|++++|+....++   .|++
T Consensus       286 ~-~~~~g~--------~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~  354 (693)
T 3iuj_A          286 L-VDNKGS--------TLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQ  354 (693)
T ss_dssp             E-EEEETT--------EEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEE
T ss_pred             E-EeccCC--------EEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEE
Confidence            4 555543        244455443   6899999987653  245666666655  8999999888766543   7899


Q ss_pred             EeCCCCeEEEEEe--cCCCEEEEEEccCCCEEEEEEcC----CcEEEEEe
Q 008467          519 WSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIAACFAN----HTVCVLDF  562 (564)
Q Consensus       519 w~~~~~~~~~~~~--~~~~i~~~~w~~~g~~la~~~~~----~~v~v~~~  562 (564)
                      |++..+. ...+.  ..+.+..++++++++.|+..+.+    +++..+|+
T Consensus       355 ~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~  403 (693)
T 3iuj_A          355 FDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEP  403 (693)
T ss_dssp             ECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred             EECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEEC
Confidence            9987554 34443  33457788999999988888766    67777775

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.38  E-value=2.8e-10  Score=114.82  Aligned_cols=237  Identities=12%  Similarity=0.156  Sum_probs=158.8

Q ss_pred             cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC
Q 008467          217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD  296 (564)
Q Consensus       217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d  296 (564)
                      .....++|+|+++++++...++.|++|++.++...           .+.  ..     ..... ++|+++++.|+++..+
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~-----------~~~--~~-----~~~~~-ia~~~~g~~l~~~d~~  191 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVT-----------TVH--PG-----FKGGK-PAVTKDKQRVYSIGWE  191 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEE-----------EEE--ET-----CCBCB-CEECTTSSEEEEEBSS
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEE-----------Eee--cc-----CCCCc-eeEecCCCcEEEEecC
Confidence            45789999999998888888899999998754311           111  01     11223 8999999999998887


Q ss_pred             C--eEEEEECCCcee-Eee----cCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCC
Q 008467          297 G--QARIWSTNGDLK-CTL----SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN  369 (564)
Q Consensus       297 g--~i~vw~~~~~~~-~~~----~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  369 (564)
                      +  .|.+|+..+... ..+    ..+...+.+++++|++..|+.+..++.|..||+.++... .+....           
T Consensus       192 ~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~-~~~~~~-----------  259 (409)
T 3hrp_A          192 GTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT-LIKQLE-----------  259 (409)
T ss_dssp             TTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE-EEEECC-----------
T ss_pred             CCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE-EEeccc-----------
Confidence            6  788888654322 222    224456688999996666666777889999998765421 110000           


Q ss_pred             ceEEEEeCCCeEEEEEcCCCceeeEecCCCcc--eEEEEECCC-CCEEEEEeCCCcEEEEeCCCCeeeeeccccc-----
Q 008467          370 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGE--VNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKYVHDLREHS-----  441 (564)
Q Consensus       370 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~--i~~v~~~~~-~~~las~s~dg~i~iwd~~~~~~~~~~~~~~-----  441 (564)
                                               ..++...  .+.++|+|+ +.++++-+.++.|+.|+....  +..+.++.     
T Consensus       260 -------------------------~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~  312 (409)
T 3hrp_A          260 -------------------------LSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTV  312 (409)
T ss_dssp             -------------------------CCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSC
T ss_pred             -------------------------ccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCc
Confidence                                     0011111  137889994 666677777888999987643  22222221     


Q ss_pred             ----------ccEEEEEEccCCCCCCCCCCcEEEEEEe-CCCeEEEEeCCCCeEEEEEeCC---------------CCCE
Q 008467          442 ----------KEIYTIRWSPTGSGTNNPNQQLILASAS-FDSTVKLWDVELGKLLYSLNGH---------------REPV  495 (564)
Q Consensus       442 ----------~~i~~i~~~p~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~h---------------~~~i  495 (564)
                                .....++++|++.         ++++-+ .++.|+.|++.++.. .++.++               -...
T Consensus       313 ~dg~~~~~~~~~P~gia~d~dG~---------lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P  382 (409)
T 3hrp_A          313 QDGLREEALFAQPNGMTVDEDGN---------FYIVDGFKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYP  382 (409)
T ss_dssp             BCEEGGGCBCSSEEEEEECTTCC---------EEEEETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSE
T ss_pred             CCCcccccEeCCCeEEEEeCCCC---------EEEEeCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCc
Confidence                      2367889988774         566666 789999999877774 344333               2357


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeC
Q 008467          496 YSLAFSPTGEYLASGSLDKSMHIWSL  521 (564)
Q Consensus       496 ~~~~~spdg~~lasgs~dg~i~iw~~  521 (564)
                      ..|+++|+|.++++-..+++|+.+++
T Consensus       383 ~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          383 YDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             eEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            89999999988888888888887765

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.37  E-value=6.1e-10  Score=107.33  Aligned_cols=226  Identities=12%  Similarity=0.115  Sum_probs=146.2

Q ss_pred             CccceEEEEECCC-CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEE
Q 008467          215 HTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG  293 (564)
Q Consensus       215 h~~~V~~~~~sp~-~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg  293 (564)
                      +..-..+..|+|+ +.++++...++.|..|+..++..         .  ...        ....+.+++++++|+++++ 
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~---------~--~~~--------~~~~~~~i~~~~dG~l~v~-   70 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV---------Q--RVT--------MDAPVSSVALRQSGGYVAT-   70 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE---------E--EEE--------CSSCEEEEEEBTTSSEEEE-
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE---------E--EEe--------CCCceEEEEECCCCCEEEE-
Confidence            3344568899996 55677777889999999875431         0  110        1246899999999996554 


Q ss_pred             eCCCeEEEEECCCceeEeecC-----CCCCEEEEEeCCCCCEEEEeeCCC---------cEEEEECCCcceeEEEeeccc
Q 008467          294 SYDGQARIWSTNGDLKCTLSK-----HKGPIFSLKWNKKGDYLLTGSCDK---------TAIVWDVKTEEWKQQFEFHSG  359 (564)
Q Consensus       294 ~~dg~i~vw~~~~~~~~~~~~-----h~~~V~~l~~~~~~~~l~s~s~D~---------~v~iwd~~~~~~~~~~~~~~~  359 (564)
                      . ++.|.+|+........+..     ....+..++++|+|+.+++...+.         .-.+|.+..            
T Consensus        71 ~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~------------  137 (297)
T 3g4e_A           71 I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFP------------  137 (297)
T ss_dssp             E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECT------------
T ss_pred             E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEEC------------
Confidence            3 5688999976443333221     123477899999998665443221         122222211            


Q ss_pred             CeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEE-EEEeCCCcEEEEeC--CCCee---
Q 008467          360 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL-ASCSDDVTAKIWNM--KQDKY---  433 (564)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l-as~s~dg~i~iwd~--~~~~~---  433 (564)
                                                   ...+..+..+....+.++|+|+++.| ++.+.++.|.+|++  .++..   
T Consensus       138 -----------------------------~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~  188 (297)
T 3g4e_A          138 -----------------------------DHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNR  188 (297)
T ss_dssp             -----------------------------TSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEE
T ss_pred             -----------------------------CCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCc
Confidence                                         00111111122345789999999865 55666889999987  34432   


Q ss_pred             --eeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEc-CCCCEEEEE
Q 008467          434 --VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFS-PTGEYLASG  510 (564)
Q Consensus       434 --~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~s-pdg~~lasg  510 (564)
                        ...+..+......+++.++|.         +.++....+.|..||..+++.+..+..+...+++++|+ ||++.|..+
T Consensus       189 ~~~~~~~~~~~~p~g~~~d~~G~---------lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt  259 (297)
T 3g4e_A          189 RSVYKLEKEEQIPDGMCIDAEGK---------LWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVT  259 (297)
T ss_dssp             EEEEECCGGGCEEEEEEEBTTSC---------EEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEE
T ss_pred             EEEEECCCCCCCCCeeEECCCCC---------EEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEE
Confidence              223333345567888888764         55666677889999999999988888776789999998 898876554


Q ss_pred             e
Q 008467          511 S  511 (564)
Q Consensus       511 s  511 (564)
                      +
T Consensus       260 ~  260 (297)
T 3g4e_A          260 C  260 (297)
T ss_dssp             E
T ss_pred             c
Confidence            4

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.35  E-value=2.1e-10  Score=114.80  Aligned_cols=263  Identities=8%  Similarity=0.007  Sum_probs=166.1

Q ss_pred             CCCEEEEEeC-C----CeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEEEee----------CCCcEEEEECCCcc
Q 008467          286 EGTLLATGSY-D----GQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGS----------CDKTAIVWDVKTEE  349 (564)
Q Consensus       286 ~g~~l~sg~~-d----g~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s----------~D~~v~iwd~~~~~  349 (564)
                      ++..+.+... +    +.|.+.|... +....+..-..|  .+.++|+|++++.+.          .++.|.++|..+++
T Consensus        83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~  160 (426)
T 3c75_H           83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL  160 (426)
T ss_dssp             CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred             CCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc
Confidence            4554444443 2    6899999764 455555544556  899999999988776          36789999999999


Q ss_pred             eeEEEeec-------ccCeEEEEcCC--CceEEEEeC-CCeEEEEEcCCCceeeEecCCCcceEEEEECCCC-CEEEEEe
Q 008467          350 WKQQFEFH-------SGPTLDVDWRN--NVSFATSST-DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCS  418 (564)
Q Consensus       350 ~~~~~~~~-------~~~~~~~~~~~--~~~~~~~~~-d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~-~~las~s  418 (564)
                      .+..+...       ......+.+.+  ...|++... ++.|.+.|..+.+.+..+.--.    +....|++ ..+++.+
T Consensus       161 vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----~~~~~p~g~~~~v~~~  236 (426)
T 3c75_H          161 PIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----CYHIFPASPTVFYMNC  236 (426)
T ss_dssp             EEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETTEEEEEE
T ss_pred             EEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC----ceeeccCCCcEEEEEc
Confidence            88877643       11122333333  333444433 6889999999988877665311    12233333 4556666


Q ss_pred             CCCcEEEEeCCCCeeeee----cccccccE-EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE--EEeC-
Q 008467          419 DDVTAKIWNMKQDKYVHD----LREHSKEI-YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY--SLNG-  490 (564)
Q Consensus       419 ~dg~i~iwd~~~~~~~~~----~~~~~~~i-~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~-  490 (564)
                      .||++.+.+..+++....    +.....++ ..+.+.+++.        .+++ .+..+.|.+.|...+....  .+.- 
T Consensus       237 ~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~--------~~~~-~s~~g~V~ViD~~~~~~~v~~~~~~~  307 (426)
T 3c75_H          237 RDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSG--------RLVW-PTYTGKIFQADLTAEGATFRAPIEAL  307 (426)
T ss_dssp             TTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTC--------EEEE-EBTTSEEEEEEECSSCEEECCCEESS
T ss_pred             CCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCC--------EEEE-EeCCCcEEEEeccCCceEEeeeeeec
Confidence            777777777644443311    11111111 1123444432        2333 3567899999987554321  1110 


Q ss_pred             --C-------CCCEEEEEEcCCCCEEEEEeC----------CCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCC-EEEE
Q 008467          491 --H-------REPVYSLAFSPTGEYLASGSL----------DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGD-KIAA  550 (564)
Q Consensus       491 --h-------~~~i~~~~~spdg~~lasgs~----------dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~-~la~  550 (564)
                        .       ......++|+|||+.+.++..          ++.|.++|+.+++.++++........++|+|||+ +|.+
T Consensus       308 ~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv  387 (426)
T 3c75_H          308 TEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYA  387 (426)
T ss_dssp             CTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEE
T ss_pred             cccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEE
Confidence              0       011223689999987766532          3579999999999999998766788999999999 8877


Q ss_pred             EE-cCCcEEEEEee
Q 008467          551 CF-ANHTVCVLDFR  563 (564)
Q Consensus       551 ~~-~~~~v~v~~~~  563 (564)
                      +. .++.|.|||.+
T Consensus       388 ~n~~s~~VsVID~~  401 (426)
T 3c75_H          388 LSAGTQTLHIYDAA  401 (426)
T ss_dssp             EETTTTEEEEEETT
T ss_pred             EcCCCCeEEEEECC
Confidence            76 58999999964

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.35  E-value=7.5e-11  Score=127.77  Aligned_cols=243  Identities=16%  Similarity=0.142  Sum_probs=151.6

Q ss_pred             cCCccceEEEEECCCCCEEEEE-----ECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC
Q 008467          213 EGHTSEVCACAWSPAGSLLASG-----SGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG  287 (564)
Q Consensus       213 ~~h~~~V~~~~~sp~~~~lasg-----s~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g  287 (564)
                      .+|...+..++|||||++||.+     +.+..|++||+.++....         ..+...         ....++|+ ||
T Consensus       125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~---------~~~~~~---------k~~~~~Ws-Dg  185 (693)
T 3iuj_A          125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLE---------TPLKDV---------KFSGISWL-GN  185 (693)
T ss_dssp             TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEE---------EEEEEE---------ESCCCEEE-TT
T ss_pred             CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCc---------cccCCc---------eeccEEEe-CC
Confidence            3566778899999999988843     334689999998865210         001000         02456899 99


Q ss_pred             CEEEEEeCCCe-------------EEEEECCCce---eEe--ecC-CCCCEEEEEeCCCCCEEEEeeC----CCcEEEEE
Q 008467          288 TLLATGSYDGQ-------------ARIWSTNGDL---KCT--LSK-HKGPIFSLKWNKKGDYLLTGSC----DKTAIVWD  344 (564)
Q Consensus       288 ~~l~sg~~dg~-------------i~vw~~~~~~---~~~--~~~-h~~~V~~l~~~~~~~~l~s~s~----D~~v~iwd  344 (564)
                      +.|+.++.+..             |++|+.....   ...  ... |...+.++.|+|+|++|+..+.    ++.|.+||
T Consensus       186 ~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d  265 (693)
T 3iuj_A          186 EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKD  265 (693)
T ss_dssp             TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEE
T ss_pred             CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEE
Confidence            99999888743             8999875432   222  233 4455788999999998764432    24677777


Q ss_pred             CCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEE-EEeCC---
Q 008467          345 VKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDD---  420 (564)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~la-s~s~d---  420 (564)
                      +.++..                                        ....+..+....... |+++|..|+ +...+   
T Consensus       266 ~~~~~~----------------------------------------~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~  304 (693)
T 3iuj_A          266 LSQENA----------------------------------------PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPN  304 (693)
T ss_dssp             TTSTTC----------------------------------------CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTT
T ss_pred             CCCCCC----------------------------------------ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCC
Confidence            755420                                        111222233333333 455555544 33333   


Q ss_pred             CcEEEEeCCCCee--eeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCC--eEEEEeCCCCeEEEEEe-CCCCCE
Q 008467          421 VTAKIWNMKQDKY--VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS--TVKLWDVELGKLLYSLN-GHREPV  495 (564)
Q Consensus       421 g~i~iwd~~~~~~--~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~-~h~~~i  495 (564)
                      +.|..|++.++..  ...+..|...+.  .|+|++.        .++++...++  .|++||+..+ ....+. .....+
T Consensus       305 ~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~--------~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~  373 (693)
T 3iuj_A          305 RRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSG--------YLFAEYMVDATARVEQFDYEGK-RVREVALPGLGSV  373 (693)
T ss_dssp             CEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETT--------EEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSEE
T ss_pred             CEEEEEeCCCCCccccEEEecCCCCEE--EEEEECC--------EEEEEEEECCeeEEEEEECCCC-eeEEeecCCCceE
Confidence            5788899887643  234555655554  7888764        3445555555  6889998744 444443 234557


Q ss_pred             EEEEEcCCCCEEEEEeCC----CcEEEEeCCCCeE
Q 008467          496 YSLAFSPTGEYLASGSLD----KSMHIWSLKEGKI  526 (564)
Q Consensus       496 ~~~~~spdg~~lasgs~d----g~i~iw~~~~~~~  526 (564)
                      ..++++|++..|+....+    ++|+.||+.+++.
T Consensus       374 ~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          374 SGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             EECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred             EeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence            788889998877655443    7899999988764

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.32  E-value=3.9e-10  Score=109.14  Aligned_cols=234  Identities=15%  Similarity=0.084  Sum_probs=144.7

Q ss_pred             CceeEccCCccceEEEEECCCCC-EEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC
Q 008467          207 SDVTILEGHTSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG  285 (564)
Q Consensus       207 ~~~~~l~~h~~~V~~~~~sp~~~-~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~  285 (564)
                      ..+..+..+.......+|+|+++ +++++..++.|..|+. ++..         .  .+.       .....+..++|++
T Consensus        35 ~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~---------~--~~~-------~~~~~~~gl~~d~   95 (305)
T 3dr2_A           35 ARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV---------D--VLL-------DATAFTNGNAVDA   95 (305)
T ss_dssp             CCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE---------E--EEE-------ESCSCEEEEEECT
T ss_pred             CceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE---------E--EEe-------CCCCccceeeECC
Confidence            34444555556678899999998 6777778899999986 3321         1  111       1234588999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCceeEeecCC----CCCEEEEEeCCCCCEEEE----eeCC-------------CcEEEEE
Q 008467          286 EGTLLATGSYDGQARIWSTNGDLKCTLSKH----KGPIFSLKWNKKGDYLLT----GSCD-------------KTAIVWD  344 (564)
Q Consensus       286 ~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h----~~~V~~l~~~~~~~~l~s----~s~D-------------~~v~iwd  344 (564)
                      +|+++++...++.|.+|+.++.........    ...+..+.++++|+..+|    |..+             +.|..||
T Consensus        96 dG~l~v~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d  175 (305)
T 3dr2_A           96 QQRLVHCEHGRRAITRSDADGQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLP  175 (305)
T ss_dssp             TSCEEEEETTTTEEEEECTTSCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEEC
T ss_pred             CCCEEEEECCCCEEEEECCCCCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEc
Confidence            999777766678899999876543322111    123556888888887765    3221             2233333


Q ss_pred             CCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCC----
Q 008467          345 VKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD----  420 (564)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~d----  420 (564)
                      ..++++                                         ... . .....+.++|+|+++.|+.+...    
T Consensus       176 ~~~g~~-----------------------------------------~~~-~-~~~~p~gl~~spdg~~lyv~~~~~~~~  212 (305)
T 3dr2_A          176 PDGSPL-----------------------------------------QRM-A-DLDHPNGLAFSPDEQTLYVSQTPEQGH  212 (305)
T ss_dssp             SSSCCC-----------------------------------------EEE-E-EESSEEEEEECTTSSEEEEEECCC---
T ss_pred             CCCCcE-----------------------------------------EEE-e-cCCCCcceEEcCCCCEEEEEecCCcCC
Confidence            332221                                         111 1 22345679999999977666554    


Q ss_pred             --CcEEEEeCCCCeee--eec-ccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCE
Q 008467          421 --VTAKIWNMKQDKYV--HDL-REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPV  495 (564)
Q Consensus       421 --g~i~iwd~~~~~~~--~~~-~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i  495 (564)
                        +.|.+|++......  ..+ .........+++.++|.        ++  .+..+ .|.+|+.. ++.+..+.... .+
T Consensus       213 ~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~--------lw--v~~~~-gv~~~~~~-g~~~~~~~~~~-~~  279 (305)
T 3dr2_A          213 GSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW--------LW--SSSGT-GVCVFDSD-GQLLGHIPTPG-TA  279 (305)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC--------EE--ECCSS-EEEEECTT-SCEEEEEECSS-CC
T ss_pred             CCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC--------EE--EecCC-cEEEECCC-CCEEEEEECCC-ce
Confidence              68999998654311  011 01112223455655553        23  33344 59999984 77777776554 57


Q ss_pred             EEEEEcCCCCEEEEEeCCCc
Q 008467          496 YSLAFSPTGEYLASGSLDKS  515 (564)
Q Consensus       496 ~~~~~spdg~~lasgs~dg~  515 (564)
                      .+++|+|+++.|..++.++.
T Consensus       280 ~~~~f~~d~~~L~it~~~~l  299 (305)
T 3dr2_A          280 SNCTFDQAQQRLFITGGPCL  299 (305)
T ss_dssp             CEEEECTTSCEEEEEETTEE
T ss_pred             eEEEEeCCCCEEEEEcCCeE
Confidence            89999999998888877653

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.32  E-value=2.4e-09  Score=104.60  Aligned_cols=221  Identities=11%  Similarity=0.011  Sum_probs=139.3

Q ss_pred             ceEEEEECCCC-CEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC
Q 008467          218 EVCACAWSPAG-SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD  296 (564)
Q Consensus       218 ~V~~~~~sp~~-~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d  296 (564)
                      -..+.+|+|++ .+++++..++.|.+|+..++..           ..+.        ....+.+++|+++|+++++. .+
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~-----------~~~~--------~~~~v~~i~~~~dg~l~v~~-~~  109 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRK-----------TVHA--------LPFMGSALAKISDSKQLIAS-DD  109 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE-----------EEEE--------CSSCEEEEEEEETTEEEEEE-TT
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE-----------EEEE--------CCCcceEEEEeCCCeEEEEE-CC
Confidence            35678999974 5667777788999999865421           0111        12468999999999887754 44


Q ss_pred             CeEEEEECCCceeEeecCC-----CCCEEEEEeCCCCCEEEEeeCC----CcEEEEECCCcceeEEEeecccCeEEEEcC
Q 008467          297 GQARIWSTNGDLKCTLSKH-----KGPIFSLKWNKKGDYLLTGSCD----KTAIVWDVKTEEWKQQFEFHSGPTLDVDWR  367 (564)
Q Consensus       297 g~i~vw~~~~~~~~~~~~h-----~~~V~~l~~~~~~~~l~s~s~D----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  367 (564)
                       .|.+|+..+.....+...     ...+..++++|+|+.+++...+    +...||.+.+++..                
T Consensus       110 -gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~~~----------------  172 (326)
T 2ghs_A          110 -GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVT----------------  172 (326)
T ss_dssp             -EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEE----------------
T ss_pred             -CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCcEE----------------
Confidence             488999754333323221     2357889999999866654322    11222221122111                


Q ss_pred             CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEE-EEeCCCcEEEEeCC--CC-e-----eeeecc
Q 008467          368 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVTAKIWNMK--QD-K-----YVHDLR  438 (564)
Q Consensus       368 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~la-s~s~dg~i~iwd~~--~~-~-----~~~~~~  438 (564)
                                                .+..+....+.++|+|+++.++ +.+.++.|.+|+..  ++ .     ....+.
T Consensus       173 --------------------------~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~  226 (326)
T 2ghs_A          173 --------------------------KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDST  226 (326)
T ss_dssp             --------------------------EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECT
T ss_pred             --------------------------EeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECC
Confidence                                      1111122456899999998664 44567899999975  44 2     122232


Q ss_pred             cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEc-CCCCEEEEEe
Q 008467          439 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFS-PTGEYLASGS  511 (564)
Q Consensus       439 ~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~s-pdg~~lasgs  511 (564)
                      ........+++.++|.         +.++...++.|.+||. +++.+..+..+...+++++|+ |+++.|..++
T Consensus       227 ~~~~~p~gi~~d~~G~---------lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~  290 (326)
T 2ghs_A          227 GIKGGMDGSVCDAEGH---------IWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTS  290 (326)
T ss_dssp             TSSSEEEEEEECTTSC---------EEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred             CCCCCCCeeEECCCCC---------EEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEe
Confidence            2334566788877664         4555556789999998 577777777666679999998 8988775544

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.29  E-value=6.1e-14  Score=139.85  Aligned_cols=256  Identities=15%  Similarity=0.115  Sum_probs=139.0

Q ss_pred             CCCEEEEEeCCCeEEEEEC-CCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEE-
Q 008467          286 EGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD-  363 (564)
Q Consensus       286 ~g~~l~sg~~dg~i~vw~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~-  363 (564)
                      ++..+++++.||.|+.||. .|+.+..+..  +++.+..+..++..+++++.|+.|+.||..+++.+..+..+...... 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            5678999999999999995 5777666654  45555555667778888899999999999988776555443211000 


Q ss_pred             -EEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccc
Q 008467          364 -VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK  442 (564)
Q Consensus       364 -~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~  442 (564)
                       .....+..+++++.++.++.|+..+++.+..+..+.    ...++|++..+++++.|+.|+.||.++++.+..+..+. 
T Consensus        86 sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~-  160 (369)
T 2hz6_A           86 SPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD-  160 (369)
T ss_dssp             CSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE-
T ss_pred             CceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc-
Confidence             001123345566778899999999888776665543    23456788899999999999999999888665443211 


Q ss_pred             cEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEE-EEEcCCCCEE----EEEeCCCcEE
Q 008467          443 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYS-LAFSPTGEYL----ASGSLDKSMH  517 (564)
Q Consensus       443 ~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~-~~~spdg~~l----asgs~dg~i~  517 (564)
                       .....+.++.    ..+.  .++.++.||.|+.||..+|+.++.... ..++.. ..++++|...    +.+  ++.++
T Consensus       161 -~~~~~~~~~~----~~~~--~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg~~~v~~~~~~--~~~l~  230 (369)
T 2hz6_A          161 -YAASLPEDDV----DYKM--SHFVSNGDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQREGLRKVMHINVA--VETLR  230 (369)
T ss_dssp             -ECCBCCCCCT----TCCC--CEEEEETSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTTSSCEEECCEEEE--HHHHH
T ss_pred             -ccCccccCCc----cccc--eEEEECCCCEEEEEECCCCcEEEEecC-CCceEEEEEecCCceEeccceeec--cccee
Confidence             0011111110    0011  355688999999999999999988873 445543 4566777542    222  34566


Q ss_pred             EEeCCCCe----EEEEEecCCCEEEEEEcc--CCCEEEEEEcCCcEEEEEe
Q 008467          518 IWSLKEGK----IVKTYTGNGGIFEVCWNK--EGDKIAACFANHTVCVLDF  562 (564)
Q Consensus       518 iw~~~~~~----~~~~~~~~~~i~~~~w~~--~g~~la~~~~~~~v~v~~~  562 (564)
                      .+|..+|+    .+..+...+.+.    +|  .+..|.++..+|.+..++.
T Consensus       231 ~ld~~tG~~~~~~~W~~~~~~~~~----sp~~~~g~lyv~~~~G~l~al~~  277 (369)
T 2hz6_A          231 YLTFMSGEVGRITKWKYPFPKETE----AKSKLTPTLYVGKYSTSLYASPS  277 (369)
T ss_dssp             HHHHHHHHHHHHHTSCCCCCCHHH----HHHHSEEEECBEECSSCEECCEE
T ss_pred             eeehhcCCcccceeeeeccCcccc----ccccccceEEEecccCCEEecCc
Confidence            66666665    443333222111    11  2345666666777766654

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.26  E-value=1.2e-08  Score=101.65  Aligned_cols=303  Identities=9%  Similarity=0.058  Sum_probs=182.7

Q ss_pred             CCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeecccc---ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 008467          227 AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT---NEKSKDVTTLDWNGEGTLLATGSYDGQARIWS  303 (564)
Q Consensus       227 ~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~  303 (564)
                      .+..++.++.++.+..+|..+++....          .. .....   ......+.+. ...++..++.++.++.|..+|
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~----------~~-~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d  119 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWS----------VS-LAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALN  119 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEE----------EE-CCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeee----------ec-CccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEE
Confidence            356777788889999999877753211          00 00000   0001122211 112356777888999999999


Q ss_pred             CC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCe-----EEEEcCCCceEEEEeC
Q 008467          304 TN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT-----LDVDWRNNVSFATSST  377 (564)
Q Consensus       304 ~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~  377 (564)
                      .. |+.................  .+..++.++.++.+..+|..+++.+..+.......     ..... .+..+..+..
T Consensus       120 ~~tG~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~-~~~~v~~g~~  196 (376)
T 3q7m_A          120 TSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT-AFGAAVVGGD  196 (376)
T ss_dssp             TTTCCEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE-ETTEEEECCT
T ss_pred             CCCCCEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE-ECCEEEEEcC
Confidence            75 6665444332211111111  14578888999999999999998776654432110     00011 1345566777


Q ss_pred             CCeEEEEEcCCCceeeEecCCCc--c--eE---EEEECC--CCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEE
Q 008467          378 DNMIYVCKIGENRPIKTFAGHQG--E--VN---CVKWDP--TGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR  448 (564)
Q Consensus       378 d~~i~~~~~~~~~~~~~~~~h~~--~--i~---~v~~~~--~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~  448 (564)
                      ++.++.++..+++.+-.+.....  .  +.   .+...|  .+..+..++.++.+..+|..+++.+.....  .....+.
T Consensus       197 ~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~  274 (376)
T 3q7m_A          197 NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFI  274 (376)
T ss_dssp             TTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEE
T ss_pred             CCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCce
Confidence            88999999888776655432210  0  00   000111  245677788899999999998887655432  2233333


Q ss_pred             EccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 008467          449 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH-REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV  527 (564)
Q Consensus       449 ~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h-~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~  527 (564)
                      .. .+          .+..++.++.|..+|..+|+.++..... ...+.....  .+..|+.++.+|.|.++|..+|+++
T Consensus       275 ~~-~~----------~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~  341 (376)
T 3q7m_A          275 VD-GN----------RIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFV  341 (376)
T ss_dssp             EE-TT----------EEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred             EE-CC----------EEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEE
Confidence            22 11          4566778999999999999998877622 222222222  3567888999999999999999998


Q ss_pred             EEEec-CCCEEE-EEEccCCCEEEEEEcCCcEEEEE
Q 008467          528 KTYTG-NGGIFE-VCWNKEGDKIAACFANHTVCVLD  561 (564)
Q Consensus       528 ~~~~~-~~~i~~-~~w~~~g~~la~~~~~~~v~v~~  561 (564)
                      ..+.. ...+.. ...  .+..|.++..+|.+..||
T Consensus       342 ~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          342 AQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             EEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred             EEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence            87765 223321 111  356788888899998886

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.25  E-value=4.3e-10  Score=110.79  Aligned_cols=269  Identities=12%  Similarity=0.060  Sum_probs=159.0

Q ss_pred             cceEEEEECCCCCEEEEEE--CCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEe
Q 008467          217 SEVCACAWSPAGSLLASGS--GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS  294 (564)
Q Consensus       217 ~~V~~~~~sp~~~~lasgs--~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~  294 (564)
                      ..+..++++|+|+++++..  .++.++||.+.++...           .+.........+...+..++++++|+++++-.
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-----------~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~   85 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-----------PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDN   85 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-----------ESCCCCSSCCCCCSCEEEEEECSSSEEEEEEC
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-----------cCCCcccCcccceeEeeEEEEcCCCcEEEEcC
Confidence            5688999999999998864  2344777776532210           00000001112345799999999998777654


Q ss_pred             C-----CCeEEEEECC-CceeEeecC------CCCCEEEEEeCCCCCEE-EEee---CCCcEEEEECCCcceeEEEeecc
Q 008467          295 Y-----DGQARIWSTN-GDLKCTLSK------HKGPIFSLKWNKKGDYL-LTGS---CDKTAIVWDVKTEEWKQQFEFHS  358 (564)
Q Consensus       295 ~-----dg~i~vw~~~-~~~~~~~~~------h~~~V~~l~~~~~~~~l-~s~s---~D~~v~iwd~~~~~~~~~~~~~~  358 (564)
                      .     ++.|.+||.. +.+...+..      +...+..+++++++..+ ++.+   .++.|.+||+.+++....+..|.
T Consensus        86 g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~  165 (343)
T 2qe8_A           86 GNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYP  165 (343)
T ss_dssp             HHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCT
T ss_pred             CCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCC
Confidence            4     5789999976 554444432      22345789999865554 5554   67899999998887655443221


Q ss_pred             cCeEE-EEc-CCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-----
Q 008467          359 GPTLD-VDW-RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD-----  431 (564)
Q Consensus       359 ~~~~~-~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~-----  431 (564)
                      ....+ ..+ .+...|...+.++.+..|              ...++.++|+|+++.|+.+..++. ++|.+...     
T Consensus       166 ~~~~~~~~~~~~g~~~~~~~~~g~~~~~--------------~~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~  230 (343)
T 2qe8_A          166 GIAPEDIDLVIDGVPVQIGQPDGTVIRP--------------HLGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNL  230 (343)
T ss_dssp             TTSCCSCCCEETTEECBEECTTSCEECC--------------CCCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCT
T ss_pred             cccccccceeECCEEEEeccCCCceece--------------ecccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCC
Confidence            11000 000 112222223333333221              123678999999998888877663 45543211     


Q ss_pred             e-----eee--ecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeC-CCCCEEEEEEcCC
Q 008467          432 K-----YVH--DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG-HREPVYSLAFSPT  503 (564)
Q Consensus       432 ~-----~~~--~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-h~~~i~~~~~spd  503 (564)
                      .     ...  ...++......++++++|.         ++++...++.|.+||..+++....... +...+.+++|+++
T Consensus       231 ~~~~~~~~~~~~~~g~~g~pdgia~d~~G~---------l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~  301 (343)
T 2qe8_A          231 QLTDAELGSKIERYSEKPICDGISIDKDHN---------IYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSD  301 (343)
T ss_dssp             TCCHHHHHTTCEEEEECCSCSCEEECTTCC---------EEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTT
T ss_pred             CCChhhhhcceEecccCCCCceEEECCCCC---------EEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCC
Confidence            0     000  0011222334566766653         667777889999999956764333332 2456899999999


Q ss_pred             CCEEEEEeCCCcEEEEe
Q 008467          504 GEYLASGSLDKSMHIWS  520 (564)
Q Consensus       504 g~~lasgs~dg~i~iw~  520 (564)
                      |+++++.+..+.+.+|.
T Consensus       302 g~l~v~~~~~~~~~~f~  318 (343)
T 2qe8_A          302 GYLYFDCNQLHHSAPLN  318 (343)
T ss_dssp             SCEEEEECCGGGSGGGB
T ss_pred             CcEEEEeCccccccccc
Confidence            99888887665554444

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.24  E-value=1.7e-09  Score=116.17  Aligned_cols=253  Identities=13%  Similarity=0.151  Sum_probs=160.7

Q ss_pred             CCCEEEEEeCCCeEEEEEC-CCceeEeecCC-C----CCEEEEEeCCCCCEEEEeeC------CCcEEEEECCCcceeEE
Q 008467          286 EGTLLATGSYDGQARIWST-NGDLKCTLSKH-K----GPIFSLKWNKKGDYLLTGSC------DKTAIVWDVKTEEWKQQ  353 (564)
Q Consensus       286 ~g~~l~sg~~dg~i~vw~~-~~~~~~~~~~h-~----~~V~~l~~~~~~~~l~s~s~------D~~v~iwd~~~~~~~~~  353 (564)
                      ++..++.++.|+.+..+|. .|+.+..+..+ .    ..+.+--.- .+..++.++.      ++.|+.+|..+++.+-.
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~  205 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWR  205 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence            3567888899999999997 57766655443 1    111110000 2345665554      78999999999998776


Q ss_pred             EeecccC----------------------------------eEEEEcCCCceEEEEeCC-------------------Ce
Q 008467          354 FEFHSGP----------------------------------TLDVDWRNNVSFATSSTD-------------------NM  380 (564)
Q Consensus       354 ~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~d-------------------~~  380 (564)
                      +......                                  ...++...+..++ +..+                   +.
T Consensus       206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~-~~~~~~~w~~~~~~~~~gd~~~~~s  284 (677)
T 1kb0_A          206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYV-GTGNGSPWSHKVRSPKGGDNLYLAS  284 (677)
T ss_dssp             EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEE-ECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred             eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEE-ECCCCccccCCCCCccCCCCeeeEE
Confidence            6542211                                  1122222333333 3322                   25


Q ss_pred             EEEEEcCCCceeeEecC--CC-------cceEEEEECCCC---CEEEEEeCCCcEEEEeCCCCeeeeeccccc-------
Q 008467          381 IYVCKIGENRPIKTFAG--HQ-------GEVNCVKWDPTG---SLLASCSDDVTAKIWNMKQDKYVHDLREHS-------  441 (564)
Q Consensus       381 i~~~~~~~~~~~~~~~~--h~-------~~i~~v~~~~~~---~~las~s~dg~i~iwd~~~~~~~~~~~~~~-------  441 (564)
                      |+.+|..+++.+-.+..  |.       .....+....+|   ..++.++.+|.+.++|..+++.+..+....       
T Consensus       285 v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~  364 (677)
T 1kb0_A          285 IVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGY  364 (677)
T ss_dssp             EEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEE
T ss_pred             EEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccccc
Confidence            88888888887665543  21       122223334467   678999999999999999998876543211       


Q ss_pred             ----ccEE------------------------EEEEccCCCCCCCCCCcEEEEEEe------------------------
Q 008467          442 ----KEIY------------------------TIRWSPTGSGTNNPNQQLILASAS------------------------  469 (564)
Q Consensus       442 ----~~i~------------------------~i~~~p~~~~~~~~~~~~~l~s~s------------------------  469 (564)
                          .++.                        .++++|        +..++++...                        
T Consensus       365 d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp--------~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~  436 (677)
T 1kb0_A          365 DKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNP--------QTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQS  436 (677)
T ss_dssp             CTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEET--------TTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTG
T ss_pred             CCCCceeeccccCcCCCccEECcCcccccCCCCceEcC--------CCCEEEEeChhcceeeeccccccccccccccccc
Confidence                0110                        122333        2233332211                        


Q ss_pred             ------------------CCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe
Q 008467          470 ------------------FDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT  531 (564)
Q Consensus       470 ------------------~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~  531 (564)
                                        ..|.|..||+.+++.++++. +..++....++.++..++.++.||.+++||.++|+++..+.
T Consensus       437 ~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~  515 (677)
T 1kb0_A          437 GTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP  515 (677)
T ss_dssp             GGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeee
Confidence                              12789999999999998886 34455666677888899999999999999999999999987


Q ss_pred             cCCCE--EEEEEccCCCEEE
Q 008467          532 GNGGI--FEVCWNKEGDKIA  549 (564)
Q Consensus       532 ~~~~i--~~~~w~~~g~~la  549 (564)
                      ...++  .-+.|..+|+.++
T Consensus       516 ~~~~~~~~p~~y~~~G~~~v  535 (677)
T 1kb0_A          516 TGTGVVAAPSTYMVDGRQYV  535 (677)
T ss_dssp             CSSCCCSCCEEEEETTEEEE
T ss_pred             CCCCcccCCEEEEeCCEEEE
Confidence            65443  3567788997444

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.24  E-value=4.7e-10  Score=109.59  Aligned_cols=296  Identities=14%  Similarity=0.070  Sum_probs=183.0

Q ss_pred             EECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 008467          223 AWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIW  302 (564)
Q Consensus       223 ~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw  302 (564)
                      ....++. |..|+.++.+..|| .++.....             ..    .....+.++...++|.+.+ ++.+  +..+
T Consensus        26 ~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~-------------~~----~~~~~~~~~~~~~~g~l~v-~t~~--l~~~   83 (330)
T 3hxj_A           26 ILAKNGT-IYLGSSNKNLYAIN-TDGSVKWF-------------FK----SGEIIECRPSIGKDGTIYF-GSDK--VYAI   83 (330)
T ss_dssp             EECTTSC-EECSSTTTTTEEEC-TTSCEEES-------------SC----GGGEEEECCEETTTTEECC-SSCE--EEEE
T ss_pred             eEccCCe-EEEEcCCCEEEEEC-CCCcEEEE-------------Ee----cCCCcccceEEecCCcEEE-ecCc--EEEE
Confidence            3444554 45566778888888 65542110             00    0112345666667776544 4444  8888


Q ss_pred             ECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEE
Q 008467          303 STNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIY  382 (564)
Q Consensus       303 ~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  382 (564)
                      +..+.....+.............  +..+..++.++.+..+|.. ++....+......+..+....+..+..++.++.++
T Consensus        84 d~~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~  160 (330)
T 3hxj_A           84 NPDGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLY  160 (330)
T ss_dssp             CCCGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEE
T ss_pred             CCCCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEE
Confidence            87665443333222222222222  5578888889999999988 66555444433333333333344566677788999


Q ss_pred             EEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCc
Q 008467          383 VCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQ  462 (564)
Q Consensus       383 ~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~  462 (564)
                      .++.. ++.+..+......+.++...+++.+++..   +.+..+| .+++....+......+.++...+++.        
T Consensus       161 ~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~--------  227 (330)
T 3hxj_A          161 AINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT--------  227 (330)
T ss_dssp             EECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC--------
T ss_pred             EECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe--------
Confidence            99987 66665665555667778888888866544   7899999 66665555544444556666655542        


Q ss_pred             EEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC-CCEEEEEE
Q 008467          463 LILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCW  541 (564)
Q Consensus       463 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~-~~i~~~~w  541 (564)
                        |..++.++.|..+|. +++.+..+......+.++.+.++|. |..++.+|.|..+|. +++.+..+... ..+.++..
T Consensus       228 --l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~  302 (330)
T 3hxj_A          228 --IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVI  302 (330)
T ss_dssp             --EEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEE
T ss_pred             --EEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEECC-CCcEEEEEEcCCccccceEE
Confidence              455677888988884 5677766665444445566666665 556777888999996 78777766543 33566777


Q ss_pred             ccCCCEEEEEEcCCcEEEEEe
Q 008467          542 NKEGDKIAACFANHTVCVLDF  562 (564)
Q Consensus       542 ~~~g~~la~~~~~~~v~v~~~  562 (564)
                      +++|+. .++..+|.+.+...
T Consensus       303 d~~g~l-~~gt~~G~~~~~~~  322 (330)
T 3hxj_A          303 DENGTI-YFGTRNGKFYALFN  322 (330)
T ss_dssp             CTTCCE-EEECTTSCEEEEEC
T ss_pred             cCCCEE-EEEcCCCeEEEEec
Confidence            788875 45668888887654

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.24  E-value=2.1e-09  Score=115.77  Aligned_cols=315  Identities=11%  Similarity=0.110  Sum_probs=178.9

Q ss_pred             CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEEC-CC
Q 008467          228 GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST-NG  306 (564)
Q Consensus       228 ~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~-~~  306 (564)
                      +..|+.++.++.+.-+|..+|+............   .............+   ..  .+..+++++.||.+..+|. .|
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~---~~~~~~~~~~~~~~---~~--~~g~v~v~~~dg~l~AlDa~TG  141 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRH---RAGEACCDAVNRGV---AV--WKGKVYVGVLDGRLEAIDAKTG  141 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGG---GGGGCTTCSCCCCC---EE--ETTEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCcc---ccccccccCCCCcc---EE--ECCEEEEEccCCEEEEEECCCC
Confidence            5667777788889999988776422110000000   00000000000111   11  3567888899999999997 46


Q ss_pred             ceeEeecCC--CCCEEEEEeCC---CCCEEEEee------CCCcEEEEECCCcceeEEEeeccc-C--------------
Q 008467          307 DLKCTLSKH--KGPIFSLKWNK---KGDYLLTGS------CDKTAIVWDVKTEEWKQQFEFHSG-P--------------  360 (564)
Q Consensus       307 ~~~~~~~~h--~~~V~~l~~~~---~~~~l~s~s------~D~~v~iwd~~~~~~~~~~~~~~~-~--------------  360 (564)
                      +.+..+...  ......+..+|   ++ .++.++      .++.|..||+.+++.+-.+..... +              
T Consensus       142 ~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~  220 (689)
T 1yiq_A          142 QRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAK  220 (689)
T ss_dssp             CEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHT
T ss_pred             CEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccccccccc
Confidence            665444321  11111111122   34 455443      378999999999998766543110 0              


Q ss_pred             ------------------eEEEEcCCCceEEEEeCCC-------------------eEEEEEcCCCceeeEecC--CC--
Q 008467          361 ------------------TLDVDWRNNVSFATSSTDN-------------------MIYVCKIGENRPIKTFAG--HQ--  399 (564)
Q Consensus       361 ------------------~~~~~~~~~~~~~~~~~d~-------------------~i~~~~~~~~~~~~~~~~--h~--  399 (564)
                                        ...++... ..+..+..++                   .|+.+|..+++.+-.+..  |.  
T Consensus       221 ~~~g~~w~~~~~g~~~w~~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~w  299 (689)
T 1yiq_A          221 TWFGDAYVEQGGGGTAWDSFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAW  299 (689)
T ss_dssp             TCCSSTHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCS
T ss_pred             ccCCceeeecCCCCccccceeEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccc
Confidence                              11122222 3344444443                   488999999887766653  21  


Q ss_pred             -----cceEEEEECCCCC---EEEEEeCCCcEEEEeCCCCeeeeeccccc-ccEEEEE----------------------
Q 008467          400 -----GEVNCVKWDPTGS---LLASCSDDVTAKIWNMKQDKYVHDLREHS-KEIYTIR----------------------  448 (564)
Q Consensus       400 -----~~i~~v~~~~~~~---~las~s~dg~i~iwd~~~~~~~~~~~~~~-~~i~~i~----------------------  448 (564)
                           ..+.......+|+   .++.++.+|.++++|..+++.+....... .....+.                      
T Consensus       300 d~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~  379 (689)
T 1yiq_A          300 DYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRN  379 (689)
T ss_dssp             CCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCE
T ss_pred             cccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCee
Confidence                 1222223233565   78899999999999999998863322110 0000000                      


Q ss_pred             -EccCCC-------CCCCCCCcEEEEEEe--------------------------------------------CCCeEEE
Q 008467          449 -WSPTGS-------GTNNPNQQLILASAS--------------------------------------------FDSTVKL  476 (564)
Q Consensus       449 -~~p~~~-------~~~~~~~~~~l~s~s--------------------------------------------~dg~i~i  476 (564)
                       ..|...       ...+|...++++...                                            .+|.|+.
T Consensus       380 ~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A  459 (689)
T 1yiq_A          380 LVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIA  459 (689)
T ss_dssp             EESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEE
T ss_pred             EeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEE
Confidence             001000       011122222222111                                            1488999


Q ss_pred             EeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCE--EEEEEccCCC-EEEEEEc
Q 008467          477 WDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGI--FEVCWNKEGD-KIAACFA  553 (564)
Q Consensus       477 wd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i--~~~~w~~~g~-~la~~~~  553 (564)
                      ||+.+|+.++++..+. ++....++..|.+++.|+.||.|+.||.++|+++..+....++  .-+.|..+|+ ++++...
T Consensus       460 ~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G  538 (689)
T 1yiq_A          460 WDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMAG  538 (689)
T ss_dssp             EETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             EECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEec
Confidence            9999999999887543 4444566778889999999999999999999999998765443  3578889997 4554443

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.22  E-value=1.4e-09  Score=116.87  Aligned_cols=269  Identities=10%  Similarity=0.033  Sum_probs=175.4

Q ss_pred             CCEEEEEeCCCeEEEEEC-CCceeEeecCCCC-----------CEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEE
Q 008467          287 GTLLATGSYDGQARIWST-NGDLKCTLSKHKG-----------PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF  354 (564)
Q Consensus       287 g~~l~sg~~dg~i~vw~~-~~~~~~~~~~h~~-----------~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  354 (564)
                      +..++.++.++.|..+|. .|+.+-.+.....           ...++..  .+..|+.++.|+.+..+|..+++.+-.+
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~  154 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ  154 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence            345556666777887775 3554444332210           0011222  3568888999999999999999988776


Q ss_pred             eec-c----cCeE-EEEcCCCceEEEEe-----CCCeEEEEEcCCCceeeEecCCCc-----------------------
Q 008467          355 EFH-S----GPTL-DVDWRNNVSFATSS-----TDNMIYVCKIGENRPIKTFAGHQG-----------------------  400 (564)
Q Consensus       355 ~~~-~----~~~~-~~~~~~~~~~~~~~-----~d~~i~~~~~~~~~~~~~~~~h~~-----------------------  400 (564)
                      ... .    ..+. .....++..++.++     .++.|+.+|..+++.+-.+.....                       
T Consensus       155 ~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~  234 (677)
T 1kb0_A          155 NTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGK  234 (677)
T ss_dssp             ETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGC
T ss_pred             cCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCc
Confidence            654 1    0010 00012333444333     268999999988887655542211                       


Q ss_pred             ---------ceEEEEECCCCCEEEEEeCCC-------------------cEEEEeCCCCeeeeeccc--cc-------cc
Q 008467          401 ---------EVNCVKWDPTGSLLASCSDDV-------------------TAKIWNMKQDKYVHDLRE--HS-------KE  443 (564)
Q Consensus       401 ---------~i~~v~~~~~~~~las~s~dg-------------------~i~iwd~~~~~~~~~~~~--~~-------~~  443 (564)
                               ....++++|++.+|+.++.++                   .|..+|.++++.+-.++.  |.       ..
T Consensus       235 ~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~  314 (677)
T 1kb0_A          235 WWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQP  314 (677)
T ss_dssp             HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred             eeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCC
Confidence                     113578899999988887764                   489999999988765543  21       01


Q ss_pred             EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCC-----------CCEE----------------
Q 008467          444 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR-----------EPVY----------------  496 (564)
Q Consensus       444 i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-----------~~i~----------------  496 (564)
                      ..-+....+|.      ...+++.++.+|.|+++|..+|+.+.......           .++.                
T Consensus       315 p~l~~~~~dG~------~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~  388 (677)
T 1kb0_A          315 MILADIKIAGK------PRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPG  388 (677)
T ss_dssp             CEEEEEEETTE------EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSC
T ss_pred             cEEEecccCCc------EeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcC
Confidence            11111112221      01367889999999999999999987765221           1111                


Q ss_pred             --------EEEEcCCCCEEEEEeC-------------------------------------------CCcEEEEeCCCCe
Q 008467          497 --------SLAFSPTGEYLASGSL-------------------------------------------DKSMHIWSLKEGK  525 (564)
Q Consensus       497 --------~~~~spdg~~lasgs~-------------------------------------------dg~i~iw~~~~~~  525 (564)
                              .++|+|++.++++...                                           .|.|..||+.+|+
T Consensus       389 ~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~  468 (677)
T 1kb0_A          389 PYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK  468 (677)
T ss_dssp             TTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE
T ss_pred             cccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCc
Confidence                    5789999888876543                                           2789999999999


Q ss_pred             EEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          526 IVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       526 ~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      ++..+.....+....+..+|..+.++..++.+.+||.+
T Consensus       469 ~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~  506 (677)
T 1kb0_A          469 AAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAA  506 (677)
T ss_dssp             EEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred             EEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECC
Confidence            99888766555666677888999999999999999964

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.21  E-value=9.5e-10  Score=108.26  Aligned_cols=246  Identities=7%  Similarity=-0.066  Sum_probs=156.4

Q ss_pred             EEEECCCCCEEEEEe----------CCCeEEEEECC-CceeEeecCC-------CCCEEEEEeCCCCCEEEEeeC--CCc
Q 008467          280 TLDWNGEGTLLATGS----------YDGQARIWSTN-GDLKCTLSKH-------KGPIFSLKWNKKGDYLLTGSC--DKT  339 (564)
Q Consensus       280 ~l~~s~~g~~l~sg~----------~dg~i~vw~~~-~~~~~~~~~h-------~~~V~~l~~~~~~~~l~s~s~--D~~  339 (564)
                      .+.++|||+++.++.          .++.|.+||.. ++....+...       ......+.++|+|++++.+..  +..
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~  148 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence            699999999988886          36889999976 4455554322       012357889999999998874  467


Q ss_pred             EEE--EECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCC-----Cceee----EecCCCcceEEEEEC
Q 008467          340 AIV--WDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE-----NRPIK----TFAGHQGEVNCVKWD  408 (564)
Q Consensus       340 v~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-----~~~~~----~~~~h~~~i~~v~~~  408 (564)
                      +.+  +|+.+   +..+.... . ..+.......|++.+.|+.+.+.+...     ++.+.    .+.-...+.   . +
T Consensus       149 v~V~~iD~~t---v~~i~v~~-~-~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~  219 (368)
T 1mda_H          149 AGLSVPGASD---DQLTKSAS-C-FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-A  219 (368)
T ss_dssp             EEEEETTTEE---EEEEECSS-C-CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-E
T ss_pred             EEEEEEchhh---ceEEECCC-c-eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-c
Confidence            888  99877   33332211 1 112223344566667788877777765     22221    011112232   3 5


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCe--eeeeccc-------cc---ccEEEEEEccCCCCCCCCCCcEEEEEEe---C---
Q 008467          409 PTGSLLASCSDDVTAKIWNMKQDK--YVHDLRE-------HS---KEIYTIRWSPTGSGTNNPNQQLILASAS---F---  470 (564)
Q Consensus       409 ~~~~~las~s~dg~i~iwd~~~~~--~~~~~~~-------~~---~~i~~i~~~p~~~~~~~~~~~~~l~s~s---~---  470 (564)
                      +++..++..+. +.+.+.|..+..  .+..+..       +.   .....+.++|++.        .++++..   .   
T Consensus       220 ~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~--------~lyV~~~~~~~~~~  290 (368)
T 1mda_H          220 NYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTD--------GIMILTVEHSRSCL  290 (368)
T ss_dssp             TTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTT--------EEEEEEEECSSCTT
T ss_pred             ccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCC--------EEEEEeccccCccc
Confidence            56666556666 899999986432  2222211       00   1111156777764        2333333   2   


Q ss_pred             --CCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCC-EEEEEe-CCCcEEEEeCCCCeEEEEEecCCCEEEEEEccC
Q 008467          471 --DSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGE-YLASGS-LDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKE  544 (564)
Q Consensus       471 --dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~-~lasgs-~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~  544 (564)
                        ++.+.++|+.+++.+.++.... ....|+|+|||+ .+++.. .++.|.++|+.++++++++........+++++.
T Consensus       291 ~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P~~i~~~~~  367 (368)
T 1mda_H          291 AAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSVQNE  367 (368)
T ss_dssp             SCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEECCCC
T ss_pred             ccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCCCEEEeecC
Confidence              2356699999999888775433 578999999997 456666 599999999999999999887666677776653

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.21  E-value=2.6e-09  Score=115.00  Aligned_cols=269  Identities=11%  Similarity=0.064  Sum_probs=174.9

Q ss_pred             CCEEEEEeCCCeEEEEEC-CCceeEeecCCCC----------CE-EEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEE
Q 008467          287 GTLLATGSYDGQARIWST-NGDLKCTLSKHKG----------PI-FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF  354 (564)
Q Consensus       287 g~~l~sg~~dg~i~vw~~-~~~~~~~~~~h~~----------~V-~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  354 (564)
                      +..+++++.++.|..+|. .|+.+-.+..+..          .+ .++..  .+..++.++.|+.|..+|..+++.+-.+
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~  147 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV  147 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence            456666777888888886 4665555432211          00 01111  3568888999999999999999987666


Q ss_pred             eec-c-cCeEE----EEcCCCceEEEEe-----CCCeEEEEEcCCCceeeEecCC-------------------------
Q 008467          355 EFH-S-GPTLD----VDWRNNVSFATSS-----TDNMIYVCKIGENRPIKTFAGH-------------------------  398 (564)
Q Consensus       355 ~~~-~-~~~~~----~~~~~~~~~~~~~-----~d~~i~~~~~~~~~~~~~~~~h-------------------------  398 (564)
                      ... . .....    ....++..++.++     .++.|+.+|..+++.+-.+..-                         
T Consensus       148 ~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w  227 (689)
T 1yiq_A          148 DTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAY  227 (689)
T ss_dssp             ECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTH
T ss_pred             cCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCcee
Confidence            542 1 00000    0112333444332     3689999999888876554310                         


Q ss_pred             ------CcceEEEEECCCCCEEEEEeCCCc-------------------EEEEeCCCCeeeeeccc--cc-------ccE
Q 008467          399 ------QGEVNCVKWDPTGSLLASCSDDVT-------------------AKIWNMKQDKYVHDLRE--HS-------KEI  444 (564)
Q Consensus       399 ------~~~i~~v~~~~~~~~las~s~dg~-------------------i~iwd~~~~~~~~~~~~--~~-------~~i  444 (564)
                            ......++++|+..+|+.++.++.                   |..||.++++.+-.+..  |.       .+.
T Consensus       228 ~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~  307 (689)
T 1yiq_A          228 VEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHM  307 (689)
T ss_dssp             HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCE
T ss_pred             eecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCc
Confidence                  011125788999999999988764                   99999999988766543  21       111


Q ss_pred             EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCC------------C------------------
Q 008467          445 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHRE------------P------------------  494 (564)
Q Consensus       445 ~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~------------~------------------  494 (564)
                      .......+|.      ...+++.++.+|.++++|.++|+.+....-...            +                  
T Consensus       308 ~l~d~~~~G~------~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~  381 (689)
T 1yiq_A          308 ILAELPIDGK------PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLV  381 (689)
T ss_dssp             EEEEEEETTE------EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEE
T ss_pred             EEEeeccCCc------EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEe
Confidence            1111111221      012578899999999999999998854321110            0                  


Q ss_pred             ---------EEEEEEcCCCCEEEEEeC---------------------------------------------CCcEEEEe
Q 008467          495 ---------VYSLAFSPTGEYLASGSL---------------------------------------------DKSMHIWS  520 (564)
Q Consensus       495 ---------i~~~~~spdg~~lasgs~---------------------------------------------dg~i~iw~  520 (564)
                               -..++|+|+...+++.+.                                             +|.|..||
T Consensus       382 ~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D  461 (689)
T 1yiq_A          382 TPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWD  461 (689)
T ss_dssp             SSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEE
T ss_pred             CCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEE
Confidence                     112789998887776532                                             37899999


Q ss_pred             CCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          521 LKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       521 ~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      +.+|+++..+........-.+...|..+++|+.|+.+++||.+
T Consensus       462 ~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~  504 (689)
T 1yiq_A          462 PVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAAD  504 (689)
T ss_dssp             TTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred             CCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECC
Confidence            9999999888766555555677889999999999999999964

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.16  E-value=2.1e-11  Score=121.38  Aligned_cols=203  Identities=13%  Similarity=0.095  Sum_probs=120.3

Q ss_pred             CCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEc-CCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcc-eE-
Q 008467          327 KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGE-VN-  403 (564)
Q Consensus       327 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~-i~-  403 (564)
                      ++..+++++.|+.|..||..+++.+..+..  +.+..... .++..+++++.|+.++.|+..+++.+..+..+... +. 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            467899999999999999999998877765  33332222 23446677789999999999877766555443221 11 


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe
Q 008467          404 CVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK  483 (564)
Q Consensus       404 ~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~  483 (564)
                      +..+. ++..|++|+.|+.+..||..+++.+..+..+.    ...++|.+         ..+++++.|+.|+.||.++|+
T Consensus        86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~---------~~v~~~~~dg~v~a~d~~tG~  151 (369)
T 2hz6_A           86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPST---------SLLYLGRTEYTITMYDTKTRE  151 (369)
T ss_dssp             CSCC------CCCCEEEEEEEEECCC-----------------------------------EEEEEEEEEEECCCSSSSS
T ss_pred             CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccC---------CEEEEEecCCEEEEEECCCCC
Confidence            11111 34567788899999999999998876665443    12334422         256778889999999999998


Q ss_pred             EEEEEeCCCCCEEEEEEcCCC---CEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEE-EEEEccCCCE
Q 008467          484 LLYSLNGHREPVYSLAFSPTG---EYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIF-EVCWNKEGDK  547 (564)
Q Consensus       484 ~~~~~~~h~~~i~~~~~spdg---~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~-~~~w~~~g~~  547 (564)
                      .++.+..+.  ....++++++   ..+++++.||.|+.||..+|+++..+.....+. ..+++++|..
T Consensus       152 ~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~~  217 (369)
T 2hz6_A          152 LRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLR  217 (369)
T ss_dssp             CCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSCE
T ss_pred             EEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCceE
Confidence            876654221  1223344432   567778999999999999999988887655554 3456667653

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.06  E-value=4.4e-07  Score=85.58  Aligned_cols=248  Identities=11%  Similarity=-0.005  Sum_probs=150.0

Q ss_pred             CEEEEEeCCCeEEEEECCCceeE------eecCCCCCEEEEEeCCCCCEEEE-eeCCCcEEEEECCCcceeEEEeecccC
Q 008467          288 TLLATGSYDGQARIWSTNGDLKC------TLSKHKGPIFSLKWNKKGDYLLT-GSCDKTAIVWDVKTEEWKQQFEFHSGP  360 (564)
Q Consensus       288 ~~l~sg~~dg~i~vw~~~~~~~~------~~~~h~~~V~~l~~~~~~~~l~s-~s~D~~v~iwd~~~~~~~~~~~~~~~~  360 (564)
                      .+|+.+.. +.|+.++.++....      .+......+.+++|++++..|+. -...+.|..+++.+......+......
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~   80 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS   80 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence            34444443 46777777654321      12212234678999997766654 445689999998766543332221122


Q ss_pred             e--EEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC---CCcEEEEeCCCCeeee
Q 008467          361 T--LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD---DVTAKIWNMKQDKYVH  435 (564)
Q Consensus       361 ~--~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~---dg~i~iwd~~~~~~~~  435 (564)
                      .  +.+++.....+++....+.|.+++...................++++|++..|..+..   .+.|..+++.......
T Consensus        81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~  160 (267)
T 1npe_A           81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI  160 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE
T ss_pred             ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEE
Confidence            3  3445555667777778889999988654322222222245788999996555444433   4678888876433211


Q ss_pred             ecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCc
Q 008467          436 DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKS  515 (564)
Q Consensus       436 ~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~  515 (564)
                      ...........++++|++.        .+.++-...+.|.++|.........+.+. .....++.. .+..+++....+.
T Consensus       161 ~~~~~~~~P~gia~d~~~~--------~lyv~d~~~~~I~~~~~~g~~~~~~~~~~-~~P~gi~~d-~~~lyva~~~~~~  230 (267)
T 1npe_A          161 LAQDNLGLPNGLTFDAFSS--------QLCWVDAGTHRAECLNPAQPGRRKVLEGL-QYPFAVTSY-GKNLYYTDWKTNS  230 (267)
T ss_dssp             EECTTCSCEEEEEEETTTT--------EEEEEETTTTEEEEEETTEEEEEEEEECC-CSEEEEEEE-TTEEEEEETTTTE
T ss_pred             EEECCCCCCcEEEEcCCCC--------EEEEEECCCCEEEEEecCCCceEEEecCC-CCceEEEEe-CCEEEEEECCCCe
Confidence            1112223467888888653        35566667789999999754433333332 234667664 3344444445689


Q ss_pred             EEEEeCCCCeEEEEEecCC--CEEEEEEccCCC
Q 008467          516 MHIWSLKEGKIVKTYTGNG--GIFEVCWNKEGD  546 (564)
Q Consensus       516 i~iw~~~~~~~~~~~~~~~--~i~~~~w~~~g~  546 (564)
                      |.+++..+|+.+.++....  ..+.+++.|++.
T Consensus       231 v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          231 VIAMDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             EEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             EEEEeCCCCCceEEEccccccccceeeecCccC
Confidence            9999999999988886432  467888888875

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.06  E-value=1.1e-07  Score=94.75  Aligned_cols=260  Identities=8%  Similarity=0.031  Sum_probs=161.7

Q ss_pred             CCEEEEEeCCCeEEEEECC-CceeEeecCC---------CCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEee
Q 008467          287 GTLLATGSYDGQARIWSTN-GDLKCTLSKH---------KGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF  356 (564)
Q Consensus       287 g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h---------~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~  356 (564)
                      +..+++++.++.|..+|.. |+........         ...+.+. ....+..++.++.++.|..+|..+++..-.+..
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~  131 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV  131 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence            5667778888999999974 6655444321         1223221 122456788899999999999999987765554


Q ss_pred             cccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcce-----EEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 008467          357 HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEV-----NCVKWDPTGSLLASCSDDVTAKIWNMKQD  431 (564)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i-----~~v~~~~~~~~las~s~dg~i~iwd~~~~  431 (564)
                      .......... .+..++.++.++.++.++..+++.+-.+.......     ......  +..++.++.++.+..+|..++
T Consensus       132 ~~~~~~~p~~-~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG  208 (376)
T 3q7m_A          132 AGEALSRPVV-SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQG  208 (376)
T ss_dssp             SSCCCSCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTC
T ss_pred             CCceEcCCEE-ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCC
Confidence            3221111111 13456667788999999998887665554322111     111222  346777888999999999988


Q ss_pred             eeeeeccccccc----EEE---EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCC
Q 008467          432 KYVHDLREHSKE----IYT---IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG  504 (564)
Q Consensus       432 ~~~~~~~~~~~~----i~~---i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg  504 (564)
                      +.+.........    +..   +.-.|.     . .+. .+..++.++.+..+|..+|+.++....  .....+..  ++
T Consensus       209 ~~~w~~~~~~~~~~~~~~~~~~~~~~p~-----~-~~~-~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~  277 (376)
T 3q7m_A          209 QMIWQQRISQATGSTEIDRLSDVDTTPV-----V-VNG-VVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DG  277 (376)
T ss_dssp             CEEEEEECCC-----------CCCCCCE-----E-ETT-EEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ET
T ss_pred             cEEEEEecccCCCCcccccccccCCCcE-----E-ECC-EEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--EC
Confidence            876554322110    000   000010     0 011 356677899999999999998887653  23444444  46


Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEEec-CC-CEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          505 EYLASGSLDKSMHIWSLKEGKIVKTYTG-NG-GIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       505 ~~lasgs~dg~i~iw~~~~~~~~~~~~~-~~-~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      ..|..++.++.|..+|..+|+.+..... .. .+..+..  .+..|.++..+|.+.++|.+
T Consensus       278 ~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~  336 (376)
T 3q7m_A          278 NRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVE  336 (376)
T ss_dssp             TEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETT
T ss_pred             CEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECC
Confidence            6788888899999999999998877652 11 1222222  35678888888888888853

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.98  E-value=1.9e-08  Score=99.05  Aligned_cols=220  Identities=8%  Similarity=-0.067  Sum_probs=137.0

Q ss_pred             cEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEe---------CCCeEEEEEcCCCceeeEecCC-------Ccce
Q 008467          339 TAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSS---------TDNMIYVCKIGENRPIKTFAGH-------QGEV  402 (564)
Q Consensus       339 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~d~~i~~~~~~~~~~~~~~~~h-------~~~i  402 (564)
                      +|.++|..+++.+..+.....+-+.+.+.....|++..         .++.|.++|..+.+.+.++.-.       ....
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P  126 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRV  126 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCT
T ss_pred             eEEEEECCCCeEEEEEeCCCCCceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCc
Confidence            88899999999999888776674444444555566552         4788999999999988887533       1234


Q ss_pred             EEEEECCCCCEEEEEeC--CCcEEE--EeCCCCeeeeecccc------------------cccEEEEEEcc----CCCCC
Q 008467          403 NCVKWDPTGSLLASCSD--DVTAKI--WNMKQDKYVHDLREH------------------SKEIYTIRWSP----TGSGT  456 (564)
Q Consensus       403 ~~v~~~~~~~~las~s~--dg~i~i--wd~~~~~~~~~~~~~------------------~~~i~~i~~~p----~~~~~  456 (564)
                      ..++++|||++++.+..  +..+.+  +|..+   +..+...                  .+.+..+....    ++...
T Consensus       127 ~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~  203 (368)
T 1mda_H          127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVG  203 (368)
T ss_dssp             TSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECC
T ss_pred             ceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEE
Confidence            57899999999888864  457888  99866   2222110                  00111111111    00000


Q ss_pred             ------C--------CCCCcEEEEEEeCCCeEEEEeCCCCe--EEEEEeC-------CC---CCEEEEEEcCCCCEEEEE
Q 008467          457 ------N--------NPNQQLILASASFDSTVKLWDVELGK--LLYSLNG-------HR---EPVYSLAFSPTGEYLASG  510 (564)
Q Consensus       457 ------~--------~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~-------h~---~~i~~~~~spdg~~lasg  510 (564)
                            .        .+....++ ..+. +.|.+.|+..+.  .+..+.-       +.   .....++|+|||+.+..+
T Consensus       204 ~~~t~~i~vg~~P~~~~~~~~~~-~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~  281 (368)
T 1mda_H          204 AQCTGAQNCSSQAAQANYPGMLV-WAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMIL  281 (368)
T ss_dssp             CCSCTTSCBCSCCEEETTTTEEE-ECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEE
T ss_pred             EEeeeeeeCCCCccccccCCEEE-EEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEE
Confidence                  0        01111122 2223 667777775432  2221110       00   011126899999887765


Q ss_pred             eC---------CCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCE-EEEEE-cCCcEEEEEee
Q 008467          511 SL---------DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDK-IAACF-ANHTVCVLDFR  563 (564)
Q Consensus       511 s~---------dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~-la~~~-~~~~v~v~~~~  563 (564)
                      ..         ++.+.++|+.+++.++.+........++|+|||++ ++++. .++.|.|||.+
T Consensus       282 ~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~  345 (368)
T 1mda_H          282 TVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAA  345 (368)
T ss_dssp             EEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred             eccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECC
Confidence            32         23566999999999988876667889999999984 55555 58999999975

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.97  E-value=3.4e-07  Score=90.59  Aligned_cols=219  Identities=14%  Similarity=0.186  Sum_probs=143.9

Q ss_pred             CCCCEEE-EeeCCCcEEEEECCCc----ceeEEEe---e----cccCeEEEEcCCCceEEEEeCC------CeEEEEEcC
Q 008467          326 KKGDYLL-TGSCDKTAIVWDVKTE----EWKQQFE---F----HSGPTLDVDWRNNVSFATSSTD------NMIYVCKIG  387 (564)
Q Consensus       326 ~~~~~l~-s~s~D~~v~iwd~~~~----~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~d------~~i~~~~~~  387 (564)
                      +++++|+ ++-.+++|.++|+.+.    +....++   .    .......+...++..++++..+      +.+.+.|..
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~  172 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHY  172 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECC
Confidence            7777765 5667789999998765    4555552   1    0011222333333355655544      789999999


Q ss_pred             CCceeeEecCCCc---ceEEEEECCCCCEEEEEe-------------------CCCcEEEEeCCCCeeeeecccc--ccc
Q 008467          388 ENRPIKTFAGHQG---EVNCVKWDPTGSLLASCS-------------------DDVTAKIWNMKQDKYVHDLREH--SKE  443 (564)
Q Consensus       388 ~~~~~~~~~~h~~---~i~~v~~~~~~~~las~s-------------------~dg~i~iwd~~~~~~~~~~~~~--~~~  443 (564)
                      +.+.+..+....+   .--.+.|+|+++.+++..                   .+.+|.+||+.+++.+.++..-  ...
T Consensus       173 T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~  252 (462)
T 2ece_A          173 SFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRM  252 (462)
T ss_dssp             TCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEE
T ss_pred             CCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCc
Confidence            8888887762212   123477899999888874                   3689999999988877766542  123


Q ss_pred             EEEEEE--ccCCCCCCCCCCcEEEEEEe-----CCCeEEEEeCCCCeEE--EE--EeCC----------------CCCEE
Q 008467          444 IYTIRW--SPTGSGTNNPNQQLILASAS-----FDSTVKLWDVELGKLL--YS--LNGH----------------REPVY  496 (564)
Q Consensus       444 i~~i~~--~p~~~~~~~~~~~~~l~s~s-----~dg~i~iwd~~~~~~~--~~--~~~h----------------~~~i~  496 (564)
                      ...++|  +|++.        ...+++-     .+++|.+|....++..  ..  +...                .....
T Consensus       253 P~~i~f~~~Pdg~--------~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa  324 (462)
T 2ece_A          253 ALELRPLHDPTKL--------MGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT  324 (462)
T ss_dssp             EEEEEECSSTTCC--------EEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred             cceeEeeECCCCC--------EEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCcee
Confidence            345555  67664        4555565     7788988776554321  11  1110                13467


Q ss_pred             EEEEcCCCCEEEEEeC-CCcEEEEeCCC---CeEEEEEecCC---------------CEEEEEEccCCCEEEEEE
Q 008467          497 SLAFSPTGEYLASGSL-DKSMHIWSLKE---GKIVKTYTGNG---------------GIFEVCWNKEGDKIAACF  552 (564)
Q Consensus       497 ~~~~spdg~~lasgs~-dg~i~iw~~~~---~~~~~~~~~~~---------------~i~~~~w~~~g~~la~~~  552 (564)
                      .|.+||||++|.++.. .+.|.+||+.+   .+++......+               ....++++|||++|.++.
T Consensus       325 ~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          325 DIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             EEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            8999999999977664 68999999853   35666554431               357899999999999987

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.94  E-value=1.1e-08  Score=99.79  Aligned_cols=254  Identities=14%  Similarity=0.065  Sum_probs=157.2

Q ss_pred             ECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeE
Q 008467          283 WNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL  362 (564)
Q Consensus       283 ~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~  362 (564)
                      ...+|. +..++.++.|..|+..+........+...+.++...++|. |..++.+  +..+|. +++....+........
T Consensus        27 ~d~~g~-l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~  101 (330)
T 3hxj_A           27 LAKNGT-IYLGSSNKNLYAINTDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVS  101 (330)
T ss_dssp             ECTTSC-EECSSTTTTTEEECTTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----C
T ss_pred             EccCCe-EEEEcCCCEEEEECCCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCccc
Confidence            334554 5556678888888866666555444444556677766664 5555555  888886 5543332222211111


Q ss_pred             EEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccc
Q 008467          363 DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK  442 (564)
Q Consensus       363 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~  442 (564)
                      ..... +..+..++.++.++.++.. ++....+..+...+.++...+++.+ ..++.++.+..||.. ++.+..+.....
T Consensus       102 ~~~~~-~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l-~vgt~~~~l~~~d~~-g~~~~~~~~~~~  177 (330)
T 3hxj_A          102 DFTIF-EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTI-YVGSNDNYLYAINPD-GTEKWRFKTNDA  177 (330)
T ss_dssp             CEEEE-TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCE-EEECTTSEEEEECTT-SCEEEEEECSSC
T ss_pred             CceEE-CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEE-EEEcCCCEEEEECCC-CCEeEEEecCCC
Confidence            11111 4455666778889988887 6655555555555677777877775 457788999999988 666555444344


Q ss_pred             cEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 008467          443 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK  522 (564)
Q Consensus       443 ~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~  522 (564)
                      .+.++...+++.          |..++  +.|..+| .+++.+.........+.++...++|...+ ++.++.|..++. 
T Consensus       178 ~~~~~~~d~~g~----------l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~~gl~~~~~-  242 (330)
T 3hxj_A          178 ITSAASIGKDGT----------IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYV-TSLDGHLYAINP-  242 (330)
T ss_dssp             CCSCCEECTTCC----------EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEE-EETTTEEEEECT-
T ss_pred             ceeeeEEcCCCE----------EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEE-EcCCCeEEEECC-
Confidence            444444444332          33344  7899999 77888877776666788889998886554 566778888874 


Q ss_pred             CCeEEEEEecCCC-EEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467          523 EGKIVKTYTGNGG-IFEVCWNKEGDKIAACFANHTVCVLD  561 (564)
Q Consensus       523 ~~~~~~~~~~~~~-i~~~~w~~~g~~la~~~~~~~v~v~~  561 (564)
                      +++.+..+..... +..+..+++|+ |.++..++.+..+|
T Consensus       243 ~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d  281 (330)
T 3hxj_A          243 DGTEKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAIN  281 (330)
T ss_dssp             TSCEEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEEC
T ss_pred             CCCEeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEEC
Confidence            5666666654333 33455666664 45565676777765

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.94  E-value=3.1e-05  Score=85.16  Aligned_cols=314  Identities=11%  Similarity=0.076  Sum_probs=195.2

Q ss_pred             ccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeec-cccccCCCCeEEEEECCCCCEEEEEe
Q 008467          216 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVK-GRTNEKSKDVTTLDWNGEGTLLATGS  294 (564)
Q Consensus       216 ~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~V~~l~~s~~g~~l~sg~  294 (564)
                      ...|.++...+++.+++....+| +.+|+..++...           ...... .........|.++...++|.+.+ |+
T Consensus       214 ~~~i~~i~~d~~g~lwigt~~~G-l~~~~~~~~~~~-----------~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt  280 (795)
T 4a2l_A          214 TKQIQAILQQSPTRIWVATEGAG-LFLINPKTKEIK-----------NYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GT  280 (795)
T ss_dssp             CCCEEEEEEEETTEEEEEEBSSC-EEEEETTTTEEE-----------EECCCTTCTTSCSCSBEEEEEECTTSCEEE-EE
T ss_pred             CCeeEEEEEcCCCCEEEEECCCC-eEEEeCCCCeEE-----------EeecCCCCccccCCCeEEEEEEcCCCCEEE-Ee
Confidence            45688888877777665433344 777886543210           000000 00111245699999999988665 44


Q ss_pred             CCCeEEEEECCCceeEeecC--------CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEee------cccC
Q 008467          295 YDGQARIWSTNGDLKCTLSK--------HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF------HSGP  360 (564)
Q Consensus       295 ~dg~i~vw~~~~~~~~~~~~--------h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~------~~~~  360 (564)
                      .+ -+.+|+........+..        ....|.++...++|. |..|+.++-|..|+..+..+......      ....
T Consensus       281 ~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~  358 (795)
T 4a2l_A          281 FN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNV  358 (795)
T ss_dssp             SS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSS
T ss_pred             CC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCe
Confidence            45 57888876544333321        235799999998886 55567777899998876654332111      1233


Q ss_pred             eEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEec-C--------CCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 008467          361 TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA-G--------HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD  431 (564)
Q Consensus       361 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~--------h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~  431 (564)
                      +.++....+..+-.++.++.+..++...+... .+. .        ....|.++..++++.+|..|+.++-+.+||..++
T Consensus       359 V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~  437 (795)
T 4a2l_A          359 VSCIVEDKDKNLWIGTNDGGLNLYNPITQRFT-SYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSG  437 (795)
T ss_dssp             EEEEEECTTSCEEEEESSSCEEEECTTTCCEE-EECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTC
T ss_pred             eEEEEECCCCCEEEEECCCCeEEEcCCCCcEE-EEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCC
Confidence            56665555555656666767777876654322 221 1        2356889999889985566788777999998876


Q ss_pred             eeeeecc----cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeC------CCCCEEEEEEc
Q 008467          432 KYVHDLR----EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG------HREPVYSLAFS  501 (564)
Q Consensus       432 ~~~~~~~----~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~------h~~~i~~~~~s  501 (564)
                      +...-..    .+...|.++...+.+.        +++  |+. +-+.+||..+++.......      ....|.++...
T Consensus       438 ~~~~~~~~~~~l~~~~v~~i~~d~~g~--------lwi--gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d  506 (795)
T 4a2l_A          438 QVENFNQRNSQLVNENVYAILPDGEGN--------LWL--GTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRD  506 (795)
T ss_dssp             CEEEECTTTSCCSCSCEEEEEECSSSC--------EEE--EES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEEC
T ss_pred             cEEEeecCCCCcCCCeeEEEEECCCCC--------EEE--Eec-CceeEEeCCCCeEEEccccccccccCCceEEEEEEC
Confidence            5433211    1345688888766553        233  444 4588899887765432211      23579999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCeEEEEEe--------cCCCEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467          502 PTGEYLASGSLDKSMHIWSLKEGKIVKTYT--------GNGGIFEVCWNKEGDKIAACFANHTVCVLDF  562 (564)
Q Consensus       502 pdg~~lasgs~dg~i~iw~~~~~~~~~~~~--------~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~  562 (564)
                      ++|++.+... .| |..|+..+++.  .+.        ....|.++..+++|+..++.. + .+..||.
T Consensus       507 ~~g~lWigt~-~G-l~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~  569 (795)
T 4a2l_A          507 SHKRLWIGGE-EG-LSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNE  569 (795)
T ss_dssp             TTCCEEEEES-SC-EEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEET
T ss_pred             CCCCEEEEeC-Cc-eEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECC
Confidence            9998776554 44 88999887766  332        123588999999998666553 3 4666663

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.93  E-value=3.6e-05  Score=84.62  Aligned_cols=309  Identities=11%  Similarity=0.091  Sum_probs=193.9

Q ss_pred             cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeec-cccccCCCCeEEEEECCCCCEEEEEeC
Q 008467          217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVK-GRTNEKSKDVTTLDWNGEGTLLATGSY  295 (564)
Q Consensus       217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~V~~l~~s~~g~~l~sg~~  295 (564)
                      ..|.++...++|.+.+. +.+ -+.+|+..++...           ...... .........|.++...++|.+. .|+.
T Consensus       263 ~~i~~i~~d~~g~lWig-t~~-Gl~~~~~~~~~~~-----------~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-igt~  328 (795)
T 4a2l_A          263 NYIRSLAMDSQNRLWIG-TFN-DLNIYHEGTDSFA-----------SYSSNPVENGSLSQRSVRSIFMDSQGGMW-LGTY  328 (795)
T ss_dssp             SBEEEEEECTTSCEEEE-ESS-CEEEEETTTTEEE-----------EECCCTTSTTSCSSSCEEEEEECTTSCEE-EEES
T ss_pred             CeEEEEEEcCCCCEEEE-eCC-hhheEcCCCCeEE-----------EEecCCCCCCCCCCCcEEEEEEeCCcCEE-EEEC
Confidence            56899999988886654 344 4778886543210           011000 0111234579999999998855 5677


Q ss_pred             CCeEEEEECCCceeEeecC-------CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEe--------ecccC
Q 008467          296 DGQARIWSTNGDLKCTLSK-------HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE--------FHSGP  360 (564)
Q Consensus       296 dg~i~vw~~~~~~~~~~~~-------h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~--------~~~~~  360 (564)
                      ++-|.+|+........+..       ....|.++...++|+ |..|+.++-+..||..++.+.....        .....
T Consensus       329 ~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~  407 (795)
T 4a2l_A          329 FGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNN  407 (795)
T ss_dssp             SSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSC
T ss_pred             CCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCcc
Confidence            7778888765432222211       235699999888876 4557777789999988776544321        11234


Q ss_pred             eEEEEcCCCce-EEEEeCCCeEEEEEcCCCceeeEec-----CCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeee
Q 008467          361 TLDVDWRNNVS-FATSSTDNMIYVCKIGENRPIKTFA-----GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV  434 (564)
Q Consensus       361 ~~~~~~~~~~~-~~~~~~d~~i~~~~~~~~~~~~~~~-----~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~  434 (564)
                      +.++....+.. +..++.++.++.++..+++. ..+.     .....|.++...++|.+.+.. . +-+.+||..+++..
T Consensus       408 v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~-~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~  484 (795)
T 4a2l_A          408 IKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV-ENFNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSFT  484 (795)
T ss_dssp             EEEEEEETTTTEEEEEETTTEEEEEETTTCCE-EEECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEEE
T ss_pred             EEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE-EEeecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeEE
Confidence            56665544444 55566667788888776543 2232     134578999999988876544 4 45888998876543


Q ss_pred             eecc------cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEe-------CCCCCEEEEEEc
Q 008467          435 HDLR------EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN-------GHREPVYSLAFS  501 (564)
Q Consensus       435 ~~~~------~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------~h~~~i~~~~~s  501 (564)
                      ....      .....|.++...+++.        +++  |+. +-|..||..+++.  .+.       .....|.++...
T Consensus       485 ~~~~~~~~~~~~~~~i~~i~~d~~g~--------lWi--gt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d  551 (795)
T 4a2l_A          485 TIEKEKDGTPVVSKQITTLFRDSHKR--------LWI--GGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEA  551 (795)
T ss_dssp             ECCBCTTCCBCCCCCEEEEEECTTCC--------EEE--EES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEEC
T ss_pred             EccccccccccCCceEEEEEECCCCC--------EEE--EeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEEC
Confidence            3211      1235688888776664        233  444 4588889877665  332       123469999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCeEEEEEec-----CCCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467          502 PTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-----NGGIFEVCWNKEGDKIAACFANHTVCVLD  561 (564)
Q Consensus       502 pdg~~lasgs~dg~i~iw~~~~~~~~~~~~~-----~~~i~~~~w~~~g~~la~~~~~~~v~v~~  561 (564)
                      ++|.+.++.. .| |..|+..+++.. .+..     ...|.++..+++|+..+++ .+ .+..||
T Consensus       552 ~~g~lWigT~-~G-l~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g~lWi~t-~~-Gl~~~~  611 (795)
T 4a2l_A          552 SNGIIWVGTR-EG-FYCFNEKDKQIK-RYNTTNGLPNNVVYGILEDSFGRLWLST-NR-GISCFN  611 (795)
T ss_dssp             TTSCEEEEES-SC-EEEEETTTTEEE-EECGGGTCSCSCEEEEEECTTSCEEEEE-TT-EEEEEE
T ss_pred             CCCCEEEEeC-CC-ceeECCCCCcEE-EeCCCCCCchhheEEEEECCCCCEEEEc-CC-ceEEEc
Confidence            9998666444 34 888998877644 3432     2358899999999876665 33 455555

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.90  E-value=2.1e-07  Score=99.84  Aligned_cols=269  Identities=12%  Similarity=0.069  Sum_probs=169.6

Q ss_pred             CCEEEEEeCCCeEEEEEC-CCceeEeecCCCC----------CE-EEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEE
Q 008467          287 GTLLATGSYDGQARIWST-NGDLKCTLSKHKG----------PI-FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF  354 (564)
Q Consensus       287 g~~l~sg~~dg~i~vw~~-~~~~~~~~~~h~~----------~V-~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  354 (564)
                      +..++.++.++.|..+|. .|+.+-.+.....          .+ .++..  .+..++.++.|+.|..+|..+++.+-.+
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~  143 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ  143 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence            345666677788888885 4555544432111          00 01111  2467888899999999999999987666


Q ss_pred             eecccC----eE-EEEcCCCceEEEEeC-----CCeEEEEEcCCCceeeEecCC--------------------------
Q 008467          355 EFHSGP----TL-DVDWRNNVSFATSST-----DNMIYVCKIGENRPIKTFAGH--------------------------  398 (564)
Q Consensus       355 ~~~~~~----~~-~~~~~~~~~~~~~~~-----d~~i~~~~~~~~~~~~~~~~h--------------------------  398 (564)
                      ......    +. .....++..++..+.     ++.|+.+|..+++.+-.+...                          
T Consensus       144 ~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w  223 (668)
T 1kv9_A          144 QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW  223 (668)
T ss_dssp             ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred             ccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcccee
Confidence            542110    00 000113333443322     588999999888876655321                          


Q ss_pred             -----CcceEEEEECCCCCEEEEEeCCCc-------------------EEEEeCCCCeeeeeccc--cc-------ccEE
Q 008467          399 -----QGEVNCVKWDPTGSLLASCSDDVT-------------------AKIWNMKQDKYVHDLRE--HS-------KEIY  445 (564)
Q Consensus       399 -----~~~i~~v~~~~~~~~las~s~dg~-------------------i~iwd~~~~~~~~~~~~--~~-------~~i~  445 (564)
                           ......++++|+..+++.++.++.                   |..+|.++++.+-.++.  |.       .+..
T Consensus       224 ~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~  303 (668)
T 1kv9_A          224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQIT  303 (668)
T ss_dssp             HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEE
T ss_pred             eeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcE
Confidence                 001124688888888888887763                   89999999988766543  22       1222


Q ss_pred             EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCC------------CCE------------------
Q 008467          446 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR------------EPV------------------  495 (564)
Q Consensus       446 ~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~------------~~i------------------  495 (564)
                      ......++.      ...+++.++.+|.++++|..+|+.+.......            .++                  
T Consensus       304 ~~d~~~~G~------~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~  377 (668)
T 1kv9_A          304 LAELNIDGK------PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSP  377 (668)
T ss_dssp             EEEEEETTE------EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCT
T ss_pred             EEEeccCCc------EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCC
Confidence            111112221      11257889999999999999999885543211            011                  


Q ss_pred             ------EEEEEcCCCCEEEEE------------------------------------eCCCcEEEEeCCCCeEEEEEecC
Q 008467          496 ------YSLAFSPTGEYLASG------------------------------------SLDKSMHIWSLKEGKIVKTYTGN  533 (564)
Q Consensus       496 ------~~~~~spdg~~lasg------------------------------------s~dg~i~iw~~~~~~~~~~~~~~  533 (564)
                            ..++|+|+...+...                                    ..+|.|..||+.+|+.+..+...
T Consensus       378 ~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~  457 (668)
T 1kv9_A          378 FGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP  457 (668)
T ss_dssp             TCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES
T ss_pred             ccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC
Confidence                  126788876665431                                    13488999999999998887765


Q ss_pred             CCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          534 GGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       534 ~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      .......+...|..|+++..++.+++||.+
T Consensus       458 ~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~  487 (668)
T 1kv9_A          458 THWNGGTLSTAGNLVFQGTAAGQMHAYSAD  487 (668)
T ss_dssp             SSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred             CCCcCceeEeCCCEEEEECCcccchhhhhh
Confidence            555555666788999999999999999864

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.86  E-value=6.3e-07  Score=96.11  Aligned_cols=314  Identities=13%  Similarity=0.159  Sum_probs=175.7

Q ss_pred             CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccC-CCCe-EEEEECCCCCEEEEEeCCCeEEEEEC-
Q 008467          228 GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEK-SKDV-TTLDWNGEGTLLATGSYDGQARIWST-  304 (564)
Q Consensus       228 ~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~V-~~l~~s~~g~~l~sg~~dg~i~vw~~-  304 (564)
                      +..|+.++.++.+.-+|..+|+........        ......... ...+ ..++.  .+..++.++.||.+..+|. 
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~--------~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~  135 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPE--------VAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAK  135 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCC--------CCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETT
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCC--------CCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECC
Confidence            556667777888888888777532111000        000000000 0000 00111  2457788889999999996 


Q ss_pred             CCceeEeecCCCC-CEEEEEeCC--CCCEEEEeeC------CCcEEEEECCCcceeEEEeeccc-C--------------
Q 008467          305 NGDLKCTLSKHKG-PIFSLKWNK--KGDYLLTGSC------DKTAIVWDVKTEEWKQQFEFHSG-P--------------  360 (564)
Q Consensus       305 ~~~~~~~~~~h~~-~V~~l~~~~--~~~~l~s~s~------D~~v~iwd~~~~~~~~~~~~~~~-~--------------  360 (564)
                      .|+.+..+..... ....+...|  .+..++.++.      ++.|..+|+.+++.+-.+..... +              
T Consensus       136 tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~  215 (668)
T 1kv9_A          136 TGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAK  215 (668)
T ss_dssp             TCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHT
T ss_pred             CCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccc
Confidence            4666554433110 000000111  1345555543      58999999999998776653210 0              


Q ss_pred             ------------------eEEEEcCCCceEEEEeCCC-------------------eEEEEEcCCCceeeEecC--CC--
Q 008467          361 ------------------TLDVDWRNNVSFATSSTDN-------------------MIYVCKIGENRPIKTFAG--HQ--  399 (564)
Q Consensus       361 ------------------~~~~~~~~~~~~~~~~~d~-------------------~i~~~~~~~~~~~~~~~~--h~--  399 (564)
                                        ...++...+ .+..+..++                   .|+.+|..+++.+-.+..  |.  
T Consensus       216 ~~~g~~~w~~~~gg~~w~~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~w  294 (668)
T 1kv9_A          216 TWQGDQYWKLGGGGTVWDSMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSW  294 (668)
T ss_dssp             TCCSSCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCS
T ss_pred             cCCccceeeeCCCCccccceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccc
Confidence                              011222223 333333333                   488888888887666543  22  


Q ss_pred             -----cceEEEEECCCCC---EEEEEeCCCcEEEEeCCCCeeeeeccccc------------ccEE---------EEEEc
Q 008467          400 -----GEVNCVKWDPTGS---LLASCSDDVTAKIWNMKQDKYVHDLREHS------------KEIY---------TIRWS  450 (564)
Q Consensus       400 -----~~i~~v~~~~~~~---~las~s~dg~i~iwd~~~~~~~~~~~~~~------------~~i~---------~i~~~  450 (564)
                           .+.....+..+|+   .++.++.+|.+.++|..+++.+..+....            .++.         .....
T Consensus       295 d~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~  374 (668)
T 1kv9_A          295 DFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMW  374 (668)
T ss_dssp             CCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEES
T ss_pred             cccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEEC
Confidence                 2222233334665   68899999999999999998774332111            0000         00000


Q ss_pred             cCCC-------CCCCCCCcEEEE-----------------------------------EEeCCCeEEEEeCCCCeEEEEE
Q 008467          451 PTGS-------GTNNPNQQLILA-----------------------------------SASFDSTVKLWDVELGKLLYSL  488 (564)
Q Consensus       451 p~~~-------~~~~~~~~~~l~-----------------------------------s~s~dg~i~iwd~~~~~~~~~~  488 (564)
                      |...       ...+|....+.+                                   ....+|.|..||+.+|+.+++.
T Consensus       375 p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~  454 (668)
T 1kv9_A          375 PSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKV  454 (668)
T ss_dssp             SCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEE
T ss_pred             CCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEc
Confidence            1000       001112122221                                   1124588999999999999887


Q ss_pred             eCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEE--EEEEccCCC-EEEEEEc
Q 008467          489 NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIF--EVCWNKEGD-KIAACFA  553 (564)
Q Consensus       489 ~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~--~~~w~~~g~-~la~~~~  553 (564)
                      ..+ .++....+...|.+++.|+.||.|+.||.++|+++..+....++.  -+.+..+|+ ++++|..
T Consensus       455 ~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~G  521 (668)
T 1kv9_A          455 PYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMAG  521 (668)
T ss_dssp             EES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             cCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEec
Confidence            643 334444555678889999999999999999999999887655442  456667887 6666654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.86  E-value=5.5e-07  Score=83.70  Aligned_cols=193  Identities=10%  Similarity=0.063  Sum_probs=136.5

Q ss_pred             EEEEEeCCCCCEEEEeeC--CCcEEEEECCCcceeEEEeecccC-eEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEe
Q 008467          319 IFSLKWNKKGDYLLTGSC--DKTAIVWDVKTEEWKQQFEFHSGP-TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF  395 (564)
Q Consensus       319 V~~l~~~~~~~~l~s~s~--D~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~  395 (564)
                      ..++.|++++..+++.+.  +++|.+.|+.+++....+.....+ ...+.+.++..+++.-.++.+.++|..+.+.+..+
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i  102 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNF  102 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEE
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEE
Confidence            578999998644444433  579999999999998887653332 23455556777888888999999999988888877


Q ss_pred             cCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeeccccc-----ccEEEEEEccCCCCCCCCCCcEEEEEEeC
Q 008467          396 AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHS-----KEIYTIRWSPTGSGTNNPNQQLILASASF  470 (564)
Q Consensus       396 ~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~i~~~p~~~~~~~~~~~~~l~s~s~  470 (564)
                      .--...-..  +++||+.++.+..+++|.++|..+.+.+..+..-.     .....+.|. ++.         +.+....
T Consensus       103 ~~g~~~g~g--lt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~---------lyvn~~~  170 (266)
T 2iwa_A          103 THQMKDGWG--LATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE---------VWANIWQ  170 (266)
T ss_dssp             ECCSSSCCE--EEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE---------EEEEETT
T ss_pred             ECCCCCeEE--EEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE---------EEEecCC
Confidence            522122223  44577766666678899999999888776654221     124566776 432         4555556


Q ss_pred             CCeEEEEeCCCCeEEEEEeCC-------------CCCEEEEEEcCCCCE-EEEEeCCCcEEEEeCCC
Q 008467          471 DSTVKLWDVELGKLLYSLNGH-------------REPVYSLAFSPTGEY-LASGSLDKSMHIWSLKE  523 (564)
Q Consensus       471 dg~i~iwd~~~~~~~~~~~~h-------------~~~i~~~~~spdg~~-lasgs~dg~i~iw~~~~  523 (564)
                      ++.|.+.|..+++.+..+.-.             ....+.|+|+|+++. ++++...+.|.+.++..
T Consensus       171 ~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          171 TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence            889999999999998887531             124589999999865 56666778888887754

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.84  E-value=1.3e-06  Score=86.59  Aligned_cols=184  Identities=15%  Similarity=0.192  Sum_probs=127.1

Q ss_pred             CceEEEEeCCCeEEEEEcCCC----ceeeEec-------CCCcceEEEEECCCCCEEEEEeCC------CcEEEEeCCCC
Q 008467          369 NVSFATSSTDNMIYVCKIGEN----RPIKTFA-------GHQGEVNCVKWDPTGSLLASCSDD------VTAKIWNMKQD  431 (564)
Q Consensus       369 ~~~~~~~~~d~~i~~~~~~~~----~~~~~~~-------~h~~~i~~v~~~~~~~~las~s~d------g~i~iwd~~~~  431 (564)
                      ...++.+..++.|+++|+.+.    +.++++.       .....-..+.+.|+| +++++..+      |.|.+.|..+.
T Consensus        96 ~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~  174 (462)
T 2ece_A           96 RFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSF  174 (462)
T ss_dssp             CEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTC
T ss_pred             CEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCC
Confidence            345677778899999999754    4445542       011134457788999 77776666      78999999999


Q ss_pred             eeeeeccccc---ccEEEEEEccCCCCCCCCCCcEEEEEEe-------------------CCCeEEEEeCCCCeEEEEEe
Q 008467          432 KYVHDLREHS---KEIYTIRWSPTGSGTNNPNQQLILASAS-------------------FDSTVKLWDVELGKLLYSLN  489 (564)
Q Consensus       432 ~~~~~~~~~~---~~i~~i~~~p~~~~~~~~~~~~~l~s~s-------------------~dg~i~iwd~~~~~~~~~~~  489 (564)
                      +.+..+....   .--+.+.|+|++.         ++++..                   ...+|.+||+.+++.+.++.
T Consensus       175 ~v~~~~~~~~~~~~~~Yd~~~~p~~~---------~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~  245 (462)
T 2ece_A          175 EPLGKWEIDRGDQYLAYDFWWNLPNE---------VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT  245 (462)
T ss_dssp             CEEEECCSBCTTCCCCCCEEEETTTT---------EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEEccCCCCccccceEEECCCCC---------EEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEe
Confidence            9888775321   2245688888764         455553                   37899999999998888876


Q ss_pred             CC--CCCEEEEEE--cCCCCEEEEEe------CCCcEEEEeCCCCeE--EEEE--ec-----------------CCCEEE
Q 008467          490 GH--REPVYSLAF--SPTGEYLASGS------LDKSMHIWSLKEGKI--VKTY--TG-----------------NGGIFE  538 (564)
Q Consensus       490 ~h--~~~i~~~~~--spdg~~lasgs------~dg~i~iw~~~~~~~--~~~~--~~-----------------~~~i~~  538 (564)
                      --  ......|.|  +|+|+++.+++      .+++|.+|....|+.  .+.+  ..                 ...+.+
T Consensus       246 vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~  325 (462)
T 2ece_A          246 LGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTD  325 (462)
T ss_dssp             SCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCC
T ss_pred             cCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeE
Confidence            42  123455656  99999887766      567888877765542  1221  11                 134678


Q ss_pred             EEEccCCCEEEEEEc-CCcEEEEEe
Q 008467          539 VCWNKEGDKIAACFA-NHTVCVLDF  562 (564)
Q Consensus       539 ~~w~~~g~~la~~~~-~~~v~v~~~  562 (564)
                      +.+|+||++|-++.. .+.|.|||+
T Consensus       326 I~lS~DGrfLYVSnrg~d~VavfdV  350 (462)
T 2ece_A          326 IDISLDDKFLYLSLWGIGEVRQYDI  350 (462)
T ss_dssp             EEECTTSCEEEEEETTTTEEEEEEC
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEe
Confidence            999999998876644 678999997

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.80  E-value=7.8e-06  Score=85.80  Aligned_cols=260  Identities=14%  Similarity=0.160  Sum_probs=151.3

Q ss_pred             CCEEEEEeCCCeEEEEEC-CCceeEeec--CCCC--CEEEEEeCC--CCCEEEEeeC------CCcEEEEECCCcceeEE
Q 008467          287 GTLLATGSYDGQARIWST-NGDLKCTLS--KHKG--PIFSLKWNK--KGDYLLTGSC------DKTAIVWDVKTEEWKQQ  353 (564)
Q Consensus       287 g~~l~sg~~dg~i~vw~~-~~~~~~~~~--~h~~--~V~~l~~~~--~~~~l~s~s~------D~~v~iwd~~~~~~~~~  353 (564)
                      +..++.++.|+.+..+|. .|+.+....  .+..  .+.   -+|  .+..++.++.      ++.|..+|..+++.+-.
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~---~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~  191 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLT---QAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWR  191 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCC---SCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceec---cCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEE
Confidence            557778888999999996 466554432  1110  111   111  1345565554      79999999999988766


Q ss_pred             EeecccC----------------------------------------eEEEEcCCCceEEEEeC-----------C----
Q 008467          354 FEFHSGP----------------------------------------TLDVDWRNNVSFATSST-----------D----  378 (564)
Q Consensus       354 ~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~-----------d----  378 (564)
                      +......                                        ...++...+..++..+.           +    
T Consensus       192 ~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~  271 (571)
T 2ad6_A          192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWT  271 (571)
T ss_dssp             EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTT
T ss_pred             EccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeE
Confidence            5532110                                        01222222333443321           2    


Q ss_pred             CeEEEEEcCCCceeeEecC--CC--------cceEEEEECCCCC---EEEEEeCCCcEEEEeCCCCeeeeeccccc----
Q 008467          379 NMIYVCKIGENRPIKTFAG--HQ--------GEVNCVKWDPTGS---LLASCSDDVTAKIWNMKQDKYVHDLREHS----  441 (564)
Q Consensus       379 ~~i~~~~~~~~~~~~~~~~--h~--------~~i~~v~~~~~~~---~las~s~dg~i~iwd~~~~~~~~~~~~~~----  441 (564)
                      +.|+.++..+++.+-.+..  |.        .++ -+...++|+   +++.++.+|.+.++|..+++.+..+....    
T Consensus       272 ~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w  350 (571)
T 2ad6_A          272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNV  350 (571)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred             EEEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccc
Confidence            3588888888877655542  21        122 122234674   67788999999999999998775543211    


Q ss_pred             ---------ccEE-----------EEEEccCCC-------CCCCCCCcEEEEEE--------------------------
Q 008467          442 ---------KEIY-----------TIRWSPTGS-------GTNNPNQQLILASA--------------------------  468 (564)
Q Consensus       442 ---------~~i~-----------~i~~~p~~~-------~~~~~~~~~~l~s~--------------------------  468 (564)
                               .++.           .....|...       ...+|...++++..                          
T Consensus       351 ~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~  430 (571)
T 2ad6_A          351 FKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA  430 (571)
T ss_dssp             EEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred             cccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccce
Confidence                     1111           001111100       01112222222221                          


Q ss_pred             ----------eCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEE-
Q 008467          469 ----------SFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIF-  537 (564)
Q Consensus       469 ----------s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~-  537 (564)
                                ..+|.|..||+.+++.+.++... .++....+...+..++.++.||.|+.||.++|+++..+.....+. 
T Consensus       431 ~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~  509 (571)
T 2ad6_A          431 MYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIG  509 (571)
T ss_dssp             EEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred             eccCccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEe
Confidence                      14589999999999998887532 233333333356677779999999999999999999987654432 


Q ss_pred             -EEEEccCCCEEEEE
Q 008467          538 -EVCWNKEGDKIAAC  551 (564)
Q Consensus       538 -~~~w~~~g~~la~~  551 (564)
                       .+.+..+|+.++++
T Consensus       510 ~p~~~~~~G~~yv~~  524 (571)
T 2ad6_A          510 SPMTYSFKGKQYIGS  524 (571)
T ss_dssp             CCEEEEETTEEEEEE
T ss_pred             eeEEEEECCEEEEEE
Confidence             34567888755544

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.80  E-value=1.8e-06  Score=90.66  Aligned_cols=229  Identities=12%  Similarity=0.081  Sum_probs=145.1

Q ss_pred             CCEEEEeeCCCcEEEEECCCcceeEEEeeccc----CeE-EEEcCCCceEEEEeC-----CCeEEEEEcCCCceeeEecC
Q 008467          328 GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG----PTL-DVDWRNNVSFATSST-----DNMIYVCKIGENRPIKTFAG  397 (564)
Q Consensus       328 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~-----d~~i~~~~~~~~~~~~~~~~  397 (564)
                      +..++.++.|+.+..+|..+++.+-.+.....    .+. .....++..++.+..     ++.|+.+|..+++.+-.+..
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~  194 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA  194 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence            56788888999999999999987765543220    000 000123444444443     78999999988877655432


Q ss_pred             CCcc--------------------------------------eEEEEECCCCCEEEEEeCC----------------CcE
Q 008467          398 HQGE--------------------------------------VNCVKWDPTGSLLASCSDD----------------VTA  423 (564)
Q Consensus       398 h~~~--------------------------------------i~~v~~~~~~~~las~s~d----------------g~i  423 (564)
                      ....                                      ...++++++..++..++.+                +.|
T Consensus       195 ~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v  274 (571)
T 2ad6_A          195 TGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTI  274 (571)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEE
T ss_pred             CCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEE
Confidence            1100                                      0135666766666665532                358


Q ss_pred             EEEeCCCCeeeeeccc--cc--------ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCC-
Q 008467          424 KIWNMKQDKYVHDLRE--HS--------KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR-  492 (564)
Q Consensus       424 ~iwd~~~~~~~~~~~~--~~--------~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-  492 (564)
                      ..+|.++++.+-.++.  |.        .++. +...++|.      ...+++.++.+|.+.++|..+|+.+....-.. 
T Consensus       275 ~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~------~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~  347 (571)
T 2ad6_A          275 WGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGK------MTPLLSHIDRNGILYTLNRENGNLIVAEKVDPA  347 (571)
T ss_dssp             EEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTE------EEEEEEEECTTSEEEEEETTTCCEEEEEESSTT
T ss_pred             EEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCc------EEEEEEEeCCCcEEEEEECCCCCEEeeecccCC
Confidence            8999999887765542  11        1111 11111221      00256778899999999999999987764221 


Q ss_pred             ------------CCE--------------------------EEEEEcCCCCEEEEEe-----------------------
Q 008467          493 ------------EPV--------------------------YSLAFSPTGEYLASGS-----------------------  511 (564)
Q Consensus       493 ------------~~i--------------------------~~~~~spdg~~lasgs-----------------------  511 (564)
                                  .|+                          ..++|+|+...|...+                       
T Consensus       348 ~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~  427 (571)
T 2ad6_A          348 VNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGA  427 (571)
T ss_dssp             CCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCE
T ss_pred             ccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccc
Confidence                        122                          2467888877766543                       


Q ss_pred             --------------CCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          512 --------------LDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       512 --------------~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                                    .+|.|..||+.+|+.+..+.....+........+..+.++..++.+.+||.+
T Consensus       428 ~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~  493 (571)
T 2ad6_A          428 TLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNK  493 (571)
T ss_dssp             EEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETT
T ss_pred             cceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECC
Confidence                          3578999999999998888765444433344567788888889999999864

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.80  E-value=2.9e-06  Score=82.42  Aligned_cols=236  Identities=13%  Similarity=0.070  Sum_probs=141.8

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecC--------------------CCCCEEEEEeCCCCCEEEEeeCC
Q 008467          278 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSK--------------------HKGPIFSLKWNKKGDYLLTGSCD  337 (564)
Q Consensus       278 V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~--------------------h~~~V~~l~~~~~~~~l~s~s~D  337 (564)
                      ..+++|.++|+++.++..++.|..|+..+.....+..                    ....+.++++.+++..|+.+...
T Consensus        21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~  100 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY  100 (322)
T ss_dssp             CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT
T ss_pred             ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC
Confidence            4567899999978888889999999877643332221                    01347889999733456556555


Q ss_pred             CcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECC-CCCEEEE
Q 008467          338 KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLAS  416 (564)
Q Consensus       338 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~-~~~~las  416 (564)
                      +.+..+|..++.... +....                             .+.       .....+.+++.+ +|++.++
T Consensus       101 ~~i~~~d~~~g~~~~-~~~~~-----------------------------~~~-------~~~~p~~i~~d~~~G~l~v~  143 (322)
T 2fp8_A          101 YHLSVVGSEGGHATQ-LATSV-----------------------------DGV-------PFKWLYAVTVDQRTGIVYFT  143 (322)
T ss_dssp             TEEEEECTTCEECEE-EESEE-----------------------------TTE-------ECSCEEEEEECTTTCCEEEE
T ss_pred             CCEEEEeCCCCEEEE-ecccC-----------------------------CCC-------cccccceEEEecCCCEEEEE
Confidence            668888876543211 10000                             000       011245567777 7766555


Q ss_pred             EeC-----------------CCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeC
Q 008467          417 CSD-----------------DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV  479 (564)
Q Consensus       417 ~s~-----------------dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~  479 (564)
                      -..                 ++.|..||..++........ ......++|+|++.        .++++-+..+.|.+|++
T Consensus       144 d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~--------~lyv~d~~~~~I~~~~~  214 (322)
T 2fp8_A          144 DVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSS--------FVLVAEFLSHQIVKYWL  214 (322)
T ss_dssp             ESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSS--------EEEEEEGGGTEEEEEES
T ss_pred             CCcccccccccceehcccCCCceEEEEeCCCCEEEEeccC-CccCcceEECCCCC--------EEEEEeCCCCeEEEEEC
Confidence            432                 36677788766543221111 12234678888764        24445566789999998


Q ss_pred             CC---CeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEeCCCCeEEEEEecC-----CCEEEEEE
Q 008467          480 EL---GKLLYSLNGHREPVYSLAFSPTGEYLASGSL----------DKSMHIWSLKEGKIVKTYTGN-----GGIFEVCW  541 (564)
Q Consensus       480 ~~---~~~~~~~~~h~~~i~~~~~spdg~~lasgs~----------dg~i~iw~~~~~~~~~~~~~~-----~~i~~~~w  541 (564)
                      ..   +... .+..... ...++++++|++.++...          .+.|..++. +|+.+..+...     ..+..+++
T Consensus       215 ~~~~~~~~~-~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~  291 (322)
T 2fp8_A          215 EGPKKGTAE-VLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE  291 (322)
T ss_dssp             SSTTTTCEE-EEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE
T ss_pred             CCCcCCccc-eEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE
Confidence            74   2211 1111122 688999999997776644          467888987 47877777543     23566666


Q ss_pred             ccCCCEEEEEEcCCcEEEEEee
Q 008467          542 NKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       542 ~~~g~~la~~~~~~~v~v~~~~  563 (564)
                       .+|+..++...++.|.++++.
T Consensus       292 -~~g~L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          292 -HDGLLYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             -ETTEEEEECSSCSEEEEEEC-
T ss_pred             -eCCEEEEeecCCCceEEEecc
Confidence             456665566677889888764

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.78  E-value=4.2e-06  Score=77.75  Aligned_cols=189  Identities=11%  Similarity=0.081  Sum_probs=128.3

Q ss_pred             EEEEcCC-CceEEEEeC--CCeEEEEEcCCCceeeEecCCC-cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeec
Q 008467          362 LDVDWRN-NVSFATSST--DNMIYVCKIGENRPIKTFAGHQ-GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL  437 (564)
Q Consensus       362 ~~~~~~~-~~~~~~~~~--d~~i~~~~~~~~~~~~~~~~h~-~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~  437 (564)
                      ..+.+.+ ...+++++.  ++.|.+.|..+++.+..+.-.. .....++++. +.+.++.-.++.+.++|..+.+.+.++
T Consensus        24 ~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~v~viD~~t~~v~~~i  102 (266)
T 2iwa_A           24 QGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNIGFIYDRRTLSNIKNF  102 (266)
T ss_dssp             EEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCSEEEEEETTTTEEEEEE
T ss_pred             ccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCCEEEEEECCCCcEEEEE
Confidence            4566655 444455443  6799999999998877764211 1223455542 344455556899999999999888777


Q ss_pred             ccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCC-----CCEEEEEEcCCCCEEEEEeC
Q 008467          438 REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR-----EPVYSLAFSPTGEYLASGSL  512 (564)
Q Consensus       438 ~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-----~~i~~~~~spdg~~lasgs~  512 (564)
                      ......-..+  ++++.        .+++ +..++.|.++|..+.+.+..+.-..     ..++.+.|. +|...+....
T Consensus       103 ~~g~~~g~gl--t~Dg~--------~l~v-s~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~  170 (266)
T 2iwa_A          103 THQMKDGWGL--ATDGK--------ILYG-SDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQ  170 (266)
T ss_dssp             ECCSSSCCEE--EECSS--------SEEE-ECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred             ECCCCCeEEE--EECCC--------EEEE-ECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCC
Confidence            5321111233  34443        2344 4468899999999988877765221     136788888 7866666666


Q ss_pred             CCcEEEEeCCCCeEEEEEecC--------------CCEEEEEEccCCCEEEEE-EcCCcEEEEEee
Q 008467          513 DKSMHIWSLKEGKIVKTYTGN--------------GGIFEVCWNKEGDKIAAC-FANHTVCVLDFR  563 (564)
Q Consensus       513 dg~i~iw~~~~~~~~~~~~~~--------------~~i~~~~w~~~g~~la~~-~~~~~v~v~~~~  563 (564)
                      ++.|.+.|..+++++..+...              ...+.++|+|++++|.++ -....+.+++++
T Consensus       171 ~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~  236 (266)
T 2iwa_A          171 TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH  236 (266)
T ss_dssp             SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred             CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence            889999999999999988642              246899999999866554 456788888874

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.77  E-value=2.9e-06  Score=89.13  Aligned_cols=265  Identities=11%  Similarity=0.053  Sum_probs=158.3

Q ss_pred             CEEEEEeC-CCeEEEEEC--CCceeEeecCCCC-----------CEEEEEeCCCCCE----EEEeeCCCcEEEEECCCcc
Q 008467          288 TLLATGSY-DGQARIWST--NGDLKCTLSKHKG-----------PIFSLKWNKKGDY----LLTGSCDKTAIVWDVKTEE  349 (564)
Q Consensus       288 ~~l~sg~~-dg~i~vw~~--~~~~~~~~~~h~~-----------~V~~l~~~~~~~~----l~s~s~D~~v~iwd~~~~~  349 (564)
                      ..+..++. ++.|..+|.  .|+.+-.+.....           ...++...|.+..    ++.++.|+.+..+|..+++
T Consensus        63 g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~  142 (599)
T 1w6s_A           63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGE  142 (599)
T ss_dssp             TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCC
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCC
Confidence            34444555 677777776  4555443322110           0112334333334    8888999999999999998


Q ss_pred             eeEEEeecc---------cCeEEEEcCCCceEEEEe-----CCCeEEEEEcCCCceeeEecCCCcc--------------
Q 008467          350 WKQQFEFHS---------GPTLDVDWRNNVSFATSS-----TDNMIYVCKIGENRPIKTFAGHQGE--------------  401 (564)
Q Consensus       350 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~-----~d~~i~~~~~~~~~~~~~~~~h~~~--------------  401 (564)
                      .+-......         .+++    .++..++.++     .++.|+.+|..+++.+-.+......              
T Consensus       143 ~~W~~~~~~~~~~~~~~ssP~v----~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~  218 (599)
T 1w6s_A          143 TVWKVENSDIKVGSTLTIAPYV----VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNP  218 (599)
T ss_dssp             EEEEEECCCGGGTCBCCSCCEE----ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred             EEEeecCCCCCccceeecCCEE----ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccc
Confidence            776554322         1111    1333343333     3789999999888766544321110              


Q ss_pred             -----------------------e-EEEEECCCCCEEEEEeCC----------------CcEEEEeCCCCeeeeeccccc
Q 008467          402 -----------------------V-NCVKWDPTGSLLASCSDD----------------VTAKIWNMKQDKYVHDLREHS  441 (564)
Q Consensus       402 -----------------------i-~~v~~~~~~~~las~s~d----------------g~i~iwd~~~~~~~~~~~~~~  441 (564)
                                             + ..+++.+...+|+.++.+                +.|..+|.++++.+-.++...
T Consensus       219 ~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~  298 (599)
T 1w6s_A          219 HYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTP  298 (599)
T ss_dssp             GGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESST
T ss_pred             cccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCC
Confidence                                   0 134566777777777655                378899999998876554321


Q ss_pred             ----------ccEEEEEEc-cCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCC-------------CCCE--
Q 008467          442 ----------KEIYTIRWS-PTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH-------------REPV--  495 (564)
Q Consensus       442 ----------~~i~~i~~~-p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h-------------~~~i--  495 (564)
                                .++. +... .+|.      ...+++.++.+|.+.++|.++|+.+....-.             ..++  
T Consensus       299 ~d~wd~d~~~~p~l-~d~~~~~G~------~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~  371 (599)
T 1w6s_A          299 HDEWDYAGVNVMML-SEQKDKDGK------ARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRD  371 (599)
T ss_dssp             TCSSCCCCCCCCEE-EEEECTTSC------EEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEEC
T ss_pred             CccccccCCCccEE-EeccccCCc------EEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeec
Confidence                      1121 1111 1221      0135777899999999999999998776421             1122  


Q ss_pred             ------------------------EEEEEcCCCCEEEEE---------------------------------e------C
Q 008467          496 ------------------------YSLAFSPTGEYLASG---------------------------------S------L  512 (564)
Q Consensus       496 ------------------------~~~~~spdg~~lasg---------------------------------s------~  512 (564)
                                              ..++|+|+..++.+.                                 +      .
T Consensus       372 ~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~  451 (599)
T 1w6s_A          372 PEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEG  451 (599)
T ss_dssp             GGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBC
T ss_pred             cccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCC
Confidence                                    246777776665442                                 1      3


Q ss_pred             CCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          513 DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       513 dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      +|.|..||+.+|+++...........-.....|..+.++..|+.++.||.+
T Consensus       452 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~  502 (599)
T 1w6s_A          452 LGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSD  502 (599)
T ss_dssp             CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETT
T ss_pred             cCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECC
Confidence            578999999999998877543322211223467777778888888888854

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.76  E-value=2.4e-05  Score=73.48  Aligned_cols=223  Identities=11%  Similarity=0.032  Sum_probs=132.3

Q ss_pred             CEEEEeeCCCcEEEEECCCccee-----EEEeecccCeEEEEc--CCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcc
Q 008467          329 DYLLTGSCDKTAIVWDVKTEEWK-----QQFEFHSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGE  401 (564)
Q Consensus       329 ~~l~s~s~D~~v~iwd~~~~~~~-----~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~  401 (564)
                      .+|+.+.. +.|+.+++......     ..+.........+.|  ..+..+++....+.|++++.........+......
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~   80 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS   80 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence            34555443 47888887654321     111111122334444  45567777778889999998765543333333346


Q ss_pred             eEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeC--CCeEEEEe
Q 008467          402 VNCVKWDPTGS-LLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF--DSTVKLWD  478 (564)
Q Consensus       402 i~~v~~~~~~~-~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~--dg~i~iwd  478 (564)
                      ...+++++++. ++++....+.|.++++........+.........+++.|.+.        .+.++...  .+.|..++
T Consensus        81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g--------~lyv~~~~~~~~~I~~~~  152 (267)
T 1npe_A           81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRG--------NLYWTDWNRDNPKIETSH  152 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTT--------EEEEEECCSSSCEEEEEE
T ss_pred             ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCC--------EEEEEECCCCCcEEEEEe
Confidence            78999999755 455556678999999875432221221223457888888542        23333332  46888888


Q ss_pred             CCCCeEEEEE-eCCCCCEEEEEEcCCCCEEEE-EeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCc
Q 008467          479 VELGKLLYSL-NGHREPVYSLAFSPTGEYLAS-GSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHT  556 (564)
Q Consensus       479 ~~~~~~~~~~-~~h~~~i~~~~~spdg~~las-gs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~  556 (564)
                      +.. .....+ .........++++|++.+|.. -...+.|.+++..................++.+ .+..+++...++.
T Consensus       153 ~dg-~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d-~~~lyva~~~~~~  230 (267)
T 1npe_A          153 MDG-TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNS  230 (267)
T ss_dssp             TTS-CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE-TTEEEEEETTTTE
T ss_pred             cCC-CCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe-CCEEEEEECCCCe
Confidence            763 322222 222345789999998776654 455689999999765544444443446677765 4445555556678


Q ss_pred             EEEEEe
Q 008467          557 VCVLDF  562 (564)
Q Consensus       557 v~v~~~  562 (564)
                      |.++|.
T Consensus       231 v~~~d~  236 (267)
T 1npe_A          231 VIAMDL  236 (267)
T ss_dssp             EEEEET
T ss_pred             EEEEeC
Confidence            888875

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.75  E-value=2e-06  Score=78.97  Aligned_cols=180  Identities=13%  Similarity=0.126  Sum_probs=127.2

Q ss_pred             EEEEEeCCCCCEEEEeeCCC--cEEEEECCCcceeEEEeecccCe-EEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEe
Q 008467          319 IFSLKWNKKGDYLLTGSCDK--TAIVWDVKTEEWKQQFEFHSGPT-LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF  395 (564)
Q Consensus       319 V~~l~~~~~~~~l~s~s~D~--~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~  395 (564)
                      ..+|.|+ ++..+.+.+.+|  +|+++|+.+++....+....... ..+...++..+++.-.++.++++|..+.+.+.++
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti  123 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSF  123 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEE
Confidence            4678888 565566666665  89999999999988876644332 2355557777888778999999999999888887


Q ss_pred             cCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccc--c---ccEEEEEEccCCCCCCCCCCcEEEEEEeC
Q 008467          396 AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH--S---KEIYTIRWSPTGSGTNNPNQQLILASASF  470 (564)
Q Consensus       396 ~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~--~---~~i~~i~~~p~~~~~~~~~~~~~l~s~s~  470 (564)
                      .-.. .-..++  ++++.|+.+..+++|.++|..+.+.+..+...  .   ..+..+.|. +|.         +.+..-.
T Consensus       124 ~~~~-eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~---------lyan~w~  190 (262)
T 3nol_A          124 NYDG-EGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE---------IFANVWQ  190 (262)
T ss_dssp             ECSS-CCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE---------EEEEETT
T ss_pred             ECCC-CceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE---------EEEEEcc
Confidence            6322 222344  45666665555788999999988877665432  1   223456665 332         4566667


Q ss_pred             CCeEEEEeCCCCeEEEEEeCC------------CCCEEEEEEcCCCCEEEEEeC
Q 008467          471 DSTVKLWDVELGKLLYSLNGH------------REPVYSLAFSPTGEYLASGSL  512 (564)
Q Consensus       471 dg~i~iwd~~~~~~~~~~~~h------------~~~i~~~~~spdg~~lasgs~  512 (564)
                      ++.|.+.|.++|+.+..+.-.            ..-.+.|||+|+++.|...+.
T Consensus       191 ~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            889999999999998887532            124588999999877766554

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.72  E-value=8.9e-06  Score=85.41  Aligned_cols=256  Identities=13%  Similarity=0.167  Sum_probs=148.0

Q ss_pred             EEEEeCCCeEEEEEC-CCceeEeecCC---------CCCEEEEEeCCCCCEEEEee------CCCcEEEEECCCcceeEE
Q 008467          290 LATGSYDGQARIWST-NGDLKCTLSKH---------KGPIFSLKWNKKGDYLLTGS------CDKTAIVWDVKTEEWKQQ  353 (564)
Q Consensus       290 l~sg~~dg~i~vw~~-~~~~~~~~~~h---------~~~V~~l~~~~~~~~l~s~s------~D~~v~iwd~~~~~~~~~  353 (564)
                      ++.++.|+.+..+|. .|+.+......         ..|+.     .++ .++.++      .++.|+.+|..+++.+-.
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-----~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~  197 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-----VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWR  197 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-----ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-----ECC-EEEEEecccccCCCCeEEEEECCCCcEEEE
Confidence            777888999999996 46655443211         12221     133 555555      389999999999987766


Q ss_pred             EeecccC----------------------------------------eEEEEcCCCceEEEEeC---------------C
Q 008467          354 FEFHSGP----------------------------------------TLDVDWRNNVSFATSST---------------D  378 (564)
Q Consensus       354 ~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~---------------d  378 (564)
                      +......                                        ...++...+..++..+.               .
T Consensus       198 ~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~  277 (599)
T 1w6s_A          198 AYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWT  277 (599)
T ss_dssp             EESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTS
T ss_pred             EcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCcccc
Confidence            5532211                                        01122223333433322               1


Q ss_pred             CeEEEEEcCCCceeeEecC--CC--------cceEEEEEC-CCC---CEEEEEeCCCcEEEEeCCCCeeeeecccc----
Q 008467          379 NMIYVCKIGENRPIKTFAG--HQ--------GEVNCVKWD-PTG---SLLASCSDDVTAKIWNMKQDKYVHDLREH----  440 (564)
Q Consensus       379 ~~i~~~~~~~~~~~~~~~~--h~--------~~i~~v~~~-~~~---~~las~s~dg~i~iwd~~~~~~~~~~~~~----  440 (564)
                      +.|+.++..+++.+-.+..  |.        .++ -+... .+|   +.++.++.+|.+.++|..+++.+......    
T Consensus       278 ~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~-l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~  356 (599)
T 1w6s_A          278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMM-LSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVN  356 (599)
T ss_dssp             SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCC
T ss_pred             ceEEEEeCCCCceeeEeecCCCccccccCCCccE-EEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcc
Confidence            4788889888887655543  21        112 12222 567   56788999999999999999877544311    


Q ss_pred             ---------cccEE--------------------------EEEEccCCCCC----------------CCCCCcEE-----
Q 008467          441 ---------SKEIY--------------------------TIRWSPTGSGT----------------NNPNQQLI-----  464 (564)
Q Consensus       441 ---------~~~i~--------------------------~i~~~p~~~~~----------------~~~~~~~~-----  464 (564)
                               ..++.                          .++++|.....                .......+     
T Consensus       357 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~  436 (599)
T 1w6s_A          357 VFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATL  436 (599)
T ss_dssp             SEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred             cccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccc
Confidence                     11111                          11222211000                00000000     


Q ss_pred             -EEE--Ee------CCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCC
Q 008467          465 -LAS--AS------FDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG  535 (564)
Q Consensus       465 -l~s--~s------~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~  535 (564)
                       +..  .+      .+|.|..||+.+++.+.+... ..++..-.....|..++.|+.||.|+.||.++|+++..+....+
T Consensus       437 ~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g  515 (599)
T 1w6s_A          437 NMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSG  515 (599)
T ss_dssp             EEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             eeccCCcCCcccCCCcCeEEEEECCCCCEEeEecC-CCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCC
Confidence             111  01      458999999999999888752 22222212233567777799999999999999999998876544


Q ss_pred             E--EEEEEccCCC-EEEEEEc
Q 008467          536 I--FEVCWNKEGD-KIAACFA  553 (564)
Q Consensus       536 i--~~~~w~~~g~-~la~~~~  553 (564)
                      +  .-+.|..+|+ ++++...
T Consensus       516 ~~~~P~~y~~~G~qyv~~~~G  536 (599)
T 1w6s_A          516 AIGYPMTYTHKGTQYVAIYYG  536 (599)
T ss_dssp             CCSCCEEEEETTEEEEEEEEC
T ss_pred             cEeccEEEEeCCEEEEEEEcc
Confidence            3  2467778897 4544433

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.71  E-value=2.5e-05  Score=75.08  Aligned_cols=226  Identities=12%  Similarity=0.059  Sum_probs=133.8

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCC--cEEEEECCCcceeEE
Q 008467          276 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK--TAIVWDVKTEEWKQQ  353 (564)
Q Consensus       276 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~--~v~iwd~~~~~~~~~  353 (564)
                      .....++|+++|+++++-..++.|..|+..+.....+. ....+.++++.++|+.+++.....  .|..+|..++++...
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~  110 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  110 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEE
Confidence            34678999999998877778899999998876544333 234678999999998655543322  366667666654321


Q ss_pred             EeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCee
Q 008467          354 FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY  433 (564)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~  433 (564)
                      ....                                        .......++..+++..+++-+.++.|.++|..++..
T Consensus       111 ~~~~----------------------------------------~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~  150 (306)
T 2p4o_A          111 LTLP----------------------------------------DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG  150 (306)
T ss_dssp             EECT----------------------------------------TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             EeCC----------------------------------------CccccCcccccCCCcEEEEECCCCeEEEEeCCCCcE
Confidence            1110                                        000112233334444444444566666666654321


Q ss_pred             -eeec---------ccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-CeE--EEEEeCCCCCEEEEEE
Q 008467          434 -VHDL---------REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-GKL--LYSLNGHREPVYSLAF  500 (564)
Q Consensus       434 -~~~~---------~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~--~~~~~~h~~~i~~~~~  500 (564)
                       +...         ...-.....+  +|++.        .++++-+..+.|..+++.. ++.  ...+... .....+++
T Consensus       151 ~v~~~~~~~~~~~~~~~~~~pngi--s~dg~--------~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-~~P~gi~v  219 (306)
T 2p4o_A          151 SIWLEHPMLARSNSESVFPAANGL--KRFGN--------FLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-TNIDDFAF  219 (306)
T ss_dssp             EEEEECGGGSCSSTTCCSCSEEEE--EEETT--------EEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-CCCSSEEE
T ss_pred             eEEEECCccccccccCCCCcCCCc--CcCCC--------EEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-CCCCCeEE
Confidence             1100         0000112333  45442        3556667788999999864 321  1111111 23466899


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCeEEEE--EecC-CCEEEEEEc---cCCCEEEEEEcC
Q 008467          501 SPTGEYLASGSLDKSMHIWSLKEGKIVKT--YTGN-GGIFEVCWN---KEGDKIAACFAN  554 (564)
Q Consensus       501 spdg~~lasgs~dg~i~iw~~~~~~~~~~--~~~~-~~i~~~~w~---~~g~~la~~~~~  554 (564)
                      +++|+++++....+.|.+++.. |++...  .... ..+.+++|.   ++++.|.++...
T Consensus       220 d~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          220 DVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             BTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence            9999988877778899999975 665332  2222 458899999   898887776553

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.69  E-value=1.9e-06  Score=88.30  Aligned_cols=183  Identities=9%  Similarity=0.066  Sum_probs=123.7

Q ss_pred             ceEEEEeCCCeEEEEEcCCCceeeEecCC-CcceEEEEE-C-CCCCEEEEEe------------------CCCcEEEEeC
Q 008467          370 VSFATSSTDNMIYVCKIGENRPIKTFAGH-QGEVNCVKW-D-PTGSLLASCS------------------DDVTAKIWNM  428 (564)
Q Consensus       370 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h-~~~i~~v~~-~-~~~~~las~s------------------~dg~i~iwd~  428 (564)
                      ..|+....+..|.+.|+...+..+.+.-- ......+++ + |++++++.++                  .++.+.+.|.
T Consensus       103 ~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~  182 (595)
T 1fwx_A          103 FLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDA  182 (595)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEET
T ss_pred             EEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEEC
Confidence            34666667778888888888776644311 234667887 5 9999988885                  2457899999


Q ss_pred             CCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC-------------------------------------
Q 008467          429 KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-------------------------------------  471 (564)
Q Consensus       429 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d-------------------------------------  471 (564)
                      .+.+.+.++..-. .-..++.+|+|.         ++++.+.+                                     
T Consensus       183 ~t~~v~~qI~Vgg-~pd~~~~spdGk---------~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~  252 (595)
T 1fwx_A          183 DKWEVAWQVLVSG-NLDNCDADYEGK---------WAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE  252 (595)
T ss_dssp             TTTEEEEEEEESS-CCCCEEECSSSS---------EEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred             CCCeEEEEEEeCC-CccceEECCCCC---------EEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE
Confidence            9887776654322 223455666654         22222222                                     


Q ss_pred             -CeEEEEeCCC--CeE-EEEEeCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCe------------EEEEEecCC
Q 008467          472 -STVKLWDVEL--GKL-LYSLNGHREPVYSLAFSPTGEYLASGS-LDKSMHIWSLKEGK------------IVKTYTGNG  534 (564)
Q Consensus       472 -g~i~iwd~~~--~~~-~~~~~~h~~~i~~~~~spdg~~lasgs-~dg~i~iw~~~~~~------------~~~~~~~~~  534 (564)
                       +.|.|.|.++  ++. +..+..- ....++.+||||+++++++ .+.+|.++|+.+.+            ++.......
T Consensus       253 i~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~  331 (595)
T 1fwx_A          253 LNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGL  331 (595)
T ss_dssp             ETTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCS
T ss_pred             ECcEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCC
Confidence             2477888876  444 4444321 2347799999999876655 67899999998653            445555556


Q ss_pred             CEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          535 GIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       535 ~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      +...++|+++|....+.+.+++|.+||+.
T Consensus       332 gP~h~aF~~dG~aY~t~~ldsqV~kwdi~  360 (595)
T 1fwx_A          332 GPLHTAFDGRGNAYTSLFLDSQVVKWNIE  360 (595)
T ss_dssp             CEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred             CcceEEECCCCeEEEEEecCCcEEEEEhh
Confidence            78999999999555677889999999963

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.69  E-value=0.00025  Score=77.65  Aligned_cols=314  Identities=10%  Similarity=0.032  Sum_probs=187.4

Q ss_pred             cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeecc-ccccCCCCeEEEEECCCCCEEEEEeC
Q 008467          217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKG-RTNEKSKDVTTLDWNGEGTLLATGSY  295 (564)
Q Consensus       217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~V~~l~~s~~g~~l~sg~~  295 (564)
                      ..|.++...++|.+.+. +.+ -+.+|+..++....           ...... ........|.++...++|.+. .|+.
T Consensus       211 ~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~~~~~~-----------~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~  276 (781)
T 3v9f_A          211 NDVRCIYKDTNGNIWIG-TSK-GLALFNANTETFTN-----------FHNNPGNIHGALSSYIFSIKQLKDNKLW-IATE  276 (781)
T ss_dssp             SSEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEEC----------------------CCCCEEEEEECTTSEEE-EEES
T ss_pred             CceeEEEEcCCCCEEEE-eCC-cHheECCCCCcEEE-----------EEcCCCccccccCceEEEEEECCCCCEE-EEeC
Confidence            46888888888887664 344 57788865432110           000000 001124569999998888755 4566


Q ss_pred             CCeEEEEECCCceeEeec---------------CCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEe-----
Q 008467          296 DGQARIWSTNGDLKCTLS---------------KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE-----  355 (564)
Q Consensus       296 dg~i~vw~~~~~~~~~~~---------------~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-----  355 (564)
                      .+-|.+++........+.               -....|.++...++|. |-.|+.++-|..++..+..+.....     
T Consensus       277 ~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~  355 (781)
T 3v9f_A          277 LNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQM  355 (781)
T ss_dssp             SSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CC
T ss_pred             CCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCcccc
Confidence            456777886643322111               1345799999888886 5566767788999887665433211     


Q ss_pred             ----ecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEe----cCCCcceEEEEECCCCCEEEEEeCCCcEEEEe
Q 008467          356 ----FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF----AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN  427 (564)
Q Consensus       356 ----~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~----~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd  427 (564)
                          .....+.++....+..+-.++.++.+..++...... ..+    ......|.++...+++.+.+ |+.++-+..++
T Consensus       356 ~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~-~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~  433 (781)
T 3v9f_A          356 NESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVA-IYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYN  433 (781)
T ss_dssp             CSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEE-ECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEEC
T ss_pred             ccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeE-EEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEc
Confidence                112345556555444555555555677777654321 111    12345789999988888655 67767788899


Q ss_pred             CCCCeeeeecc--cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCC-----CCCEEEEEE
Q 008467          428 MKQDKYVHDLR--EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH-----REPVYSLAF  500 (564)
Q Consensus       428 ~~~~~~~~~~~--~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h-----~~~i~~~~~  500 (564)
                      ..+++...-..  .....|.++...+++.          |-.|+. +-|..||..+++........     ...|.++..
T Consensus       434 ~~~~~~~~~~~~~~~~~~v~~i~~d~~g~----------lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~  502 (781)
T 3v9f_A          434 TRLKKFQIIELEKNELLDVRVFYEDKNKK----------IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQ  502 (781)
T ss_dssp             SSSCEEEECCSTTTCCCCEEEEEECTTSE----------EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEE
T ss_pred             CCCCcEEEeccCCCCCCeEEEEEECCCCC----------EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEE
Confidence            87765432211  1345688887766552          333444 56888998876543322212     357999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec-----CCCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467          501 SPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-----NGGIFEVCWNKEGDKIAACFANHTVCVLD  561 (564)
Q Consensus       501 spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~-----~~~i~~~~w~~~g~~la~~~~~~~v~v~~  561 (564)
                      .++|.+.+.....| |..|+..+++.. .+..     ...|.++..+++|+..++.. +|-+..||
T Consensus       503 d~~g~lWigt~~~G-l~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d  565 (781)
T 3v9f_A          503 DSEGRFWIGTFGGG-VGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPS  565 (781)
T ss_dssp             CTTCCEEEEESSSC-EEEECTTCCEEE-EECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESC
T ss_pred             cCCCCEEEEEcCCC-EEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEEC
Confidence            99998776543355 788998776543 3432     23588999999998666553 55335554

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.67  E-value=0.00026  Score=77.60  Aligned_cols=315  Identities=12%  Similarity=0.110  Sum_probs=184.5

Q ss_pred             cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeecc-ccccCCCCeEEEEECCCCCEEEEEeC
Q 008467          217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKG-RTNEKSKDVTTLDWNGEGTLLATGSY  295 (564)
Q Consensus       217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~V~~l~~s~~g~~l~sg~~  295 (564)
                      ..|.++...++|.+.+ |+.++-+..|+..++...           ...+... ........|.++...++|.+.+. +.
T Consensus       163 ~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~-----------~~~~~~~~~~~l~~~~i~~i~~d~~g~lwig-t~  229 (781)
T 3v9f_A          163 EQTWTATEAEDGKLYI-GHVEGGLSILSLNDKSVK-----------HFVHDPQNPNSLPGNDVRCIYKDTNGNIWIG-TS  229 (781)
T ss_dssp             CCEEEEEEEETTEEEE-EETTTEEEEEETTTTEEE-----------EECC--------CCSSEEEEEECTTCCEEEE-ET
T ss_pred             cceEEEEECCCCCEEE-EecCCCeEEEcCCCCceE-----------eeecCCCCcccCCCCceeEEEEcCCCCEEEE-eC
Confidence            4577887777777665 555545777886543210           0000000 00112356999999888886654 44


Q ss_pred             CCeEEEEECCCceeEeec--------CCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEe------------
Q 008467          296 DGQARIWSTNGDLKCTLS--------KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE------------  355 (564)
Q Consensus       296 dg~i~vw~~~~~~~~~~~--------~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~------------  355 (564)
                      + -+.+|+........+.        .....|.++...++|. |..|+..+-|.++|..++.+.....            
T Consensus       230 ~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~  307 (781)
T 3v9f_A          230 K-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNN  307 (781)
T ss_dssp             T-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSST
T ss_pred             C-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCC
Confidence            4 6888887654333221        1235699998888775 4456665668889987765433211            


Q ss_pred             --ecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEec----------CCCcceEEEEECCCCCEEEEEeCCCcE
Q 008467          356 --FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA----------GHQGEVNCVKWDPTGSLLASCSDDVTA  423 (564)
Q Consensus       356 --~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~----------~h~~~i~~v~~~~~~~~las~s~dg~i  423 (564)
                        .....+.++....+..+-.++.++-|..++..... ...+.          -....|.++...++|.+. .|+.++-+
T Consensus       308 ~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl  385 (781)
T 3v9f_A          308 YSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPT-FHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGI  385 (781)
T ss_dssp             TSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCS-CEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCE
T ss_pred             CCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCc-ceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcE
Confidence              11223555544444445555555666666654432 22221          023468999998888765 56666678


Q ss_pred             EEEeCCCCeeeeec---ccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEe--CCCCCEEEE
Q 008467          424 KIWNMKQDKYVHDL---REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN--GHREPVYSL  498 (564)
Q Consensus       424 ~iwd~~~~~~~~~~---~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~h~~~i~~~  498 (564)
                      .+|+..++....-.   ......|.++...+.+.          |-.|+.++-|..+|..+++......  .....|.++
T Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~----------lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i  455 (781)
T 3v9f_A          386 NVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN----------LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVF  455 (781)
T ss_dssp             EEEETTEEEEECC-----CCCSBEEEEEECTTSC----------EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEE
T ss_pred             EEEECCCCeEEEccCCCCCCCcceEEEEECCCCC----------EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEE
Confidence            88987655432211   11235688887766553          3346666779999988776432221  134579999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec------CCCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467          499 AFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG------NGGIFEVCWNKEGDKIAACFANHTVCVLD  561 (564)
Q Consensus       499 ~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~------~~~i~~~~w~~~g~~la~~~~~~~v~v~~  561 (564)
                      ...++|.+.+. +.. -|..|+..+++.......      ...|.+++.+++|+..++...+| +..+|
T Consensus       456 ~~d~~g~lwig-t~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~  521 (781)
T 3v9f_A          456 YEDKNKKIWIG-THA-GVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYT  521 (781)
T ss_dssp             EECTTSEEEEE-ETT-EEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEEC
T ss_pred             EECCCCCEEEE-ECC-ceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEe
Confidence            99998876654 444 588999887765443322      24588999999998766654344 65565

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.65  E-value=7.9e-05  Score=78.24  Aligned_cols=264  Identities=16%  Similarity=0.197  Sum_probs=154.1

Q ss_pred             CCEEEEEeCCCeEEEEEC-CCceeEeecCC---------CCCEEEEEeCCCCC-EEEEeeC------CCcEEEEECCCcc
Q 008467          287 GTLLATGSYDGQARIWST-NGDLKCTLSKH---------KGPIFSLKWNKKGD-YLLTGSC------DKTAIVWDVKTEE  349 (564)
Q Consensus       287 g~~l~sg~~dg~i~vw~~-~~~~~~~~~~h---------~~~V~~l~~~~~~~-~l~s~s~------D~~v~iwd~~~~~  349 (564)
                      +..++.++.|+.+..+|. .|+.+-.....         ..|+.. .=..+|+ .++.++.      ++.|..+|..+++
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~-~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~  195 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIV-KDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGE  195 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEE-ECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCC
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEe-CCCcCCcEEEEEeccccccCCCCEEEEEECCCCC
Confidence            456778889999999996 46655443221         123221 1011233 5666653      7899999999998


Q ss_pred             eeEEEeecccC-------------------------------------------eEEEEcCCCceEEEEe----------
Q 008467          350 WKQQFEFHSGP-------------------------------------------TLDVDWRNNVSFATSS----------  376 (564)
Q Consensus       350 ~~~~~~~~~~~-------------------------------------------~~~~~~~~~~~~~~~~----------  376 (564)
                      .+-........                                           ...++...+..++..+          
T Consensus       196 ~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r  275 (582)
T 1flg_A          196 EIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWAR  275 (582)
T ss_dssp             EEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGG
T ss_pred             EEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCccc
Confidence            76544321100                                           0111112233444332          


Q ss_pred             --C-------C----CeEEEEEcCCCceeeEecC--CC--------cceEEEEEC-CCCC---EEEEEeCCCcEEEEeCC
Q 008467          377 --T-------D----NMIYVCKIGENRPIKTFAG--HQ--------GEVNCVKWD-PTGS---LLASCSDDVTAKIWNMK  429 (564)
Q Consensus       377 --~-------d----~~i~~~~~~~~~~~~~~~~--h~--------~~i~~v~~~-~~~~---~las~s~dg~i~iwd~~  429 (564)
                        .       |    +.|+.+|..+++.+-.+..  |.        .++. +... .+|+   .++.++.+|.+.++|..
T Consensus       276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~  354 (582)
T 1flg_A          276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRS  354 (582)
T ss_dssp             SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETT
T ss_pred             ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECC
Confidence              1       2    5788888888887666532  32        1221 2222 4674   78889999999999999


Q ss_pred             CCeeeeecccccc--cEEEE----------------------------EEccCCC-------CCCCCCCcEEEEEE----
Q 008467          430 QDKYVHDLREHSK--EIYTI----------------------------RWSPTGS-------GTNNPNQQLILASA----  468 (564)
Q Consensus       430 ~~~~~~~~~~~~~--~i~~i----------------------------~~~p~~~-------~~~~~~~~~~l~s~----  468 (564)
                      +++.+..+.....  ....+                            ...|...       ...+|....+++..    
T Consensus       355 tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~  434 (582)
T 1flg_A          355 NGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWK  434 (582)
T ss_dssp             TCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEE
T ss_pred             CCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcc
Confidence            9988765443210  00110                            0111100       01122222222221    


Q ss_pred             ----------------------------eCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008467          469 ----------------------------SFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS  520 (564)
Q Consensus       469 ----------------------------s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~  520 (564)
                                                  ..+|.|..||+.+|+.+.+.... .++..-.....|..++.|+.||.++.||
T Consensus       435 ~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D  513 (582)
T 1flg_A          435 EDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFD  513 (582)
T ss_dssp             EEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEE
T ss_pred             eeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEE
Confidence                                        13688999999999998887533 2222222222467788899999999999


Q ss_pred             CCCCeEEEEEecCCCEE--EEEEccCCC-EEEEEEc
Q 008467          521 LKEGKIVKTYTGNGGIF--EVCWNKEGD-KIAACFA  553 (564)
Q Consensus       521 ~~~~~~~~~~~~~~~i~--~~~w~~~g~-~la~~~~  553 (564)
                      .++|+++..+....++.  -+.|..+|+ ++++...
T Consensus       514 ~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~G  549 (582)
T 1flg_A          514 AKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTVG  549 (582)
T ss_dssp             TTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             CCCCCEEEEecCCCCcccCceEEEECCEEEEEEEcc
Confidence            99999999998766554  377888997 4554433

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.62  E-value=2.6e-06  Score=87.35  Aligned_cols=217  Identities=11%  Similarity=0.057  Sum_probs=138.3

Q ss_pred             CCCCEEEEeeC-CCcEEEEECCCcceeEEEeecc-cCeEEEEc---CCCc-eEEEE-----------------eCCCeEE
Q 008467          326 KKGDYLLTGSC-DKTAIVWDVKTEEWKQQFEFHS-GPTLDVDW---RNNV-SFATS-----------------STDNMIY  382 (564)
Q Consensus       326 ~~~~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~---~~~~-~~~~~-----------------~~d~~i~  382 (564)
                      ++|++++.... +.+|.+.|+.+.++...+.... .....+.+   .+.. .|+++                 ..++.+.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            37777766554 5679999999999888665432 23444443   2333 33332                 2234678


Q ss_pred             EEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCC--------------------------------------cEE
Q 008467          383 VCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV--------------------------------------TAK  424 (564)
Q Consensus       383 ~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg--------------------------------------~i~  424 (564)
                      +.|..+.+.+.++.--. ....++++|+|+++++++.+.                                      .|.
T Consensus       179 vID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~  257 (595)
T 1fwx_A          179 AVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  257 (595)
T ss_dssp             EEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence            88888776665554211 345678999999988887553                                      244


Q ss_pred             EEeCCC--Cee-eeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe------------EEEEEe
Q 008467          425 IWNMKQ--DKY-VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK------------LLYSLN  489 (564)
Q Consensus       425 iwd~~~--~~~-~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~------------~~~~~~  489 (564)
                      +.|..+  ++. +..+.. .....++.++|+|        +++++++..+.+|.++|+.+.+            .+..+.
T Consensus       258 VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDG--------k~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~  328 (595)
T 1fwx_A          258 VVDGRKEASSLFTRYIPI-ANNPHGCNMAPDK--------KHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE  328 (595)
T ss_dssp             EEECSGGGCCSSEEEEEE-ESSCCCEEECTTS--------SEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB
T ss_pred             EEeCcccCCceeEEEEec-CCCceEEEEcCCC--------CEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC
Confidence            555544  222 222211 1223456666665        4678888889999999998652            334443


Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC----------CeEEEEEecCCCEEEEE------EccCCCEEEEEEc
Q 008467          490 GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE----------GKIVKTYTGNGGIFEVC------WNKEGDKIAACFA  553 (564)
Q Consensus       490 ~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~----------~~~~~~~~~~~~i~~~~------w~~~g~~la~~~~  553 (564)
                      . ......++|+|+|...++.-.|+.|.+|++.+          ...+.....+-.+-..+      .+|||++|.++..
T Consensus       329 v-G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk  407 (595)
T 1fwx_A          329 L-GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK  407 (595)
T ss_dssp             C-CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred             C-CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence            2 34568999999995455667799999999987          55677776554443333      4799999988744

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.60  E-value=7.3e-06  Score=75.19  Aligned_cols=178  Identities=11%  Similarity=0.042  Sum_probs=126.8

Q ss_pred             EEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccC-eEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecC
Q 008467          319 IFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP-TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG  397 (564)
Q Consensus       319 V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~  397 (564)
                      ..+|.|+. +....+.+.+|.|+++|+.+++....+ ..... ...+...++..+++.-.++.++++|..+.+.+.++.-
T Consensus        57 tqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~  134 (268)
T 3nok_A           57 TQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRY  134 (268)
T ss_dssp             EEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEEC
T ss_pred             cceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeC
Confidence            46788873 556667778889999999999998887 44322 1335666777888888899999999999998888764


Q ss_pred             CCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccc--cc---cEEEEEEccCCCCCCCCCCcEEEEEEeCCC
Q 008467          398 HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH--SK---EIYTIRWSPTGSGTNNPNQQLILASASFDS  472 (564)
Q Consensus       398 h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~--~~---~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg  472 (564)
                      - ..-..++  ++++.|+.+..+++|.++|..+.+.+..+...  ..   .+..+.|. +|.         +.+....++
T Consensus       135 ~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~---------lyanvw~s~  201 (268)
T 3nok_A          135 S-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV---------IYANIWHSS  201 (268)
T ss_dssp             S-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE---------EEEEETTCS
T ss_pred             C-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE---------EEEEECCCC
Confidence            2 2223444  46777766666889999999998877665432  21   33556665 332         456665788


Q ss_pred             eEEEEeCCCCeEEEEEeCC-------------CCCEEEEEEcCCCCEEEEEe
Q 008467          473 TVKLWDVELGKLLYSLNGH-------------REPVYSLAFSPTGEYLASGS  511 (564)
Q Consensus       473 ~i~iwd~~~~~~~~~~~~h-------------~~~i~~~~~spdg~~lasgs  511 (564)
                      .|.+.|.++++.+..+.-.             ..-.+.|||+|+++.|...+
T Consensus       202 ~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          202 DVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             eEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            9999999999998877532             12468899999875554444

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.60  E-value=0.00022  Score=69.17  Aligned_cols=265  Identities=11%  Similarity=0.062  Sum_probs=143.8

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEECCC-ceeEee----cCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcce
Q 008467          276 KDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTL----SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW  350 (564)
Q Consensus       276 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~-~~~~~~----~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~  350 (564)
                      ..+.++.|.+++..+++ +..|.| +...++ ..-...    ......+.++.|++ + .++.++.++.|..-.-....+
T Consensus        36 ~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~-~~~~~g~~g~i~~S~DgG~tW  111 (327)
T 2xbg_A           36 ATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-N-EGWIVGEPPIMLHTTDGGQSW  111 (327)
T ss_dssp             SCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-T-EEEEEEETTEEEEESSTTSSC
T ss_pred             CcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-C-eEEEEECCCeEEEECCCCCCc
Confidence            46889999888887774 556765 334443 211111    11244688999976 3 344455566555432112223


Q ss_pred             eEEEee--cccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCce-eeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEe
Q 008467          351 KQQFEF--HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRP-IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN  427 (564)
Q Consensus       351 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~-~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd  427 (564)
                      ......  .......+...++..+...+.++.|+.- .+.++. .....++...+..+++.+++.+++.+...+..+-+|
T Consensus       112 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d  190 (327)
T 2xbg_A          112 SQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWE  190 (327)
T ss_dssp             EECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEEC
T ss_pred             eECccccCCCCCeEEEEEECCCCEEEEeCCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeC
Confidence            322111  1123444444333333334445555432 111211 112234556788999999998887765544445555


Q ss_pred             C--CCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEe-C---CCCCEEEEEEc
Q 008467          428 M--KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN-G---HREPVYSLAFS  501 (564)
Q Consensus       428 ~--~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~---h~~~i~~~~~s  501 (564)
                      .  .+...+.  ......+..+.+.|++.          +..++.+|.+++++...++.-..+. .   +...+.+++|.
T Consensus       191 ~gG~tW~~~~--~~~~~~~~~~~~~~~g~----------~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~  258 (327)
T 2xbg_A          191 PGQTAWEPHN--RTTSRRLHNMGFTPDGR----------LWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYR  258 (327)
T ss_dssp             TTCSSCEEEE--CCSSSCEEEEEECTTSC----------EEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEES
T ss_pred             CCCCceeECC--CCCCCccceeEECCCCC----------EEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEec
Confidence            3  3333332  23445678888877653          3345567888777533243322222 1   22358999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCeEEEEEec----CCCEEEEEEccCCCEEEEEEcCCcEEEE
Q 008467          502 PTGEYLASGSLDKSMHIWSLKEGKIVKTYTG----NGGIFEVCWNKEGDKIAACFANHTVCVL  560 (564)
Q Consensus       502 pdg~~lasgs~dg~i~iw~~~~~~~~~~~~~----~~~i~~~~w~~~g~~la~~~~~~~v~v~  560 (564)
                      |++..++++. +|.| .+....|+--.....    ...++++.|.+++. +.++..+|.|.-+
T Consensus       259 ~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~  318 (327)
T 2xbg_A          259 TPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRY  318 (327)
T ss_dssp             SSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEE
T ss_pred             CCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEE
Confidence            9888777665 6666 455555543333321    24678899986655 4455577776554

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.59  E-value=4.2e-05  Score=74.05  Aligned_cols=260  Identities=9%  Similarity=0.030  Sum_probs=133.8

Q ss_pred             cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEee-------cc----ccccCCCCeEEEEECC
Q 008467          217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHV-------KG----RTNEKSKDVTTLDWNG  285 (564)
Q Consensus       217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~-------~~----~~~~~~~~V~~l~~s~  285 (564)
                      ....+++|+|+++++.++..++.|..|+..++..         ........       .+    ........+..+++.+
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~---------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~   89 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF---------VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL   89 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCE---------EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCce---------EEEecccccccccccccccchhccccCCCCceEEEcC
Confidence            3456789999999888888899999998654321         00000000       00    0000113478899997


Q ss_pred             -CCCEEEEEeCCCeEEEEECCCceeEeecCC-----CCCEEEEEeCC-CCCEEEEeeCCCcEEEEECCCcceeEEEeecc
Q 008467          286 -EGTLLATGSYDGQARIWSTNGDLKCTLSKH-----KGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS  358 (564)
Q Consensus       286 -~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h-----~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~  358 (564)
                       +|++++ +...+.+..++..+.....+...     ......+++.+ +|+..++-....    +....  ..       
T Consensus        90 ~~g~l~v-~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~----~~~~~--~~-------  155 (322)
T 2fp8_A           90 QNNQLYI-VDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTL----YDDRG--VQ-------  155 (322)
T ss_dssp             TTTEEEE-EETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSS----CCTTC--HH-------
T ss_pred             CCCcEEE-EECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCccc----ccccc--cc-------
Confidence             665544 44445578888765433322211     12345667777 665444432110    00000  00       


Q ss_pred             cCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEE-EEeCCCcEEEEeCCCCe--eee
Q 008467          359 GPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVTAKIWNMKQDK--YVH  435 (564)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~la-s~s~dg~i~iwd~~~~~--~~~  435 (564)
                                 ..++....++.|+.++...+... .+...-...+.++++|+++.|. +-+..+.|.+|++....  ...
T Consensus       156 -----------~~~~~~~~~g~v~~~d~~~~~~~-~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~  223 (322)
T 2fp8_A          156 -----------QIMDTSDKTGRLIKYDPSTKETT-LLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAE  223 (322)
T ss_dssp             -----------HHHHHTCCCEEEEEEETTTTEEE-EEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEE
T ss_pred             -----------eehcccCCCceEEEEeCCCCEEE-EeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccc
Confidence                       00000011223334443322211 1111112345789999998554 44567889999987421  111


Q ss_pred             ecccccccEEEEEEccCCCCCCCCCCcEEEEEEe---------CCCeEEEEeCCCCeEEEEEeCCC----CCEEEEEEcC
Q 008467          436 DLREHSKEIYTIRWSPTGSGTNNPNQQLILASAS---------FDSTVKLWDVELGKLLYSLNGHR----EPVYSLAFSP  502 (564)
Q Consensus       436 ~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s---------~dg~i~iwd~~~~~~~~~~~~h~----~~i~~~~~sp  502 (564)
                      .+....+ ...+++.++|.        ++++...         ..+.|..+|.. ++.+..+....    ..++++++ .
T Consensus       224 ~~~~~~g-P~gi~~d~~G~--------l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~  292 (322)
T 2fp8_A          224 VLVKIPN-PGNIKRNADGH--------FWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-H  292 (322)
T ss_dssp             EEEECSS-EEEEEECTTSC--------EEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-E
T ss_pred             eEEeCCC-CCCeEECCCCC--------EEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-e
Confidence            1111122 56677776653        3444433         14678888875 77766664332    34666776 4


Q ss_pred             CCCEEEEEeCCCcEEEEeCC
Q 008467          503 TGEYLASGSLDKSMHIWSLK  522 (564)
Q Consensus       503 dg~~lasgs~dg~i~iw~~~  522 (564)
                      +|+++++....+.|.++++.
T Consensus       293 ~g~L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          293 DGLLYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             TTEEEEECSSCSEEEEEEC-
T ss_pred             CCEEEEeecCCCceEEEecc
Confidence            66666666677888888875

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.58  E-value=2.1e-05  Score=71.59  Aligned_cols=180  Identities=13%  Similarity=0.104  Sum_probs=124.6

Q ss_pred             CEEEEEeCCCCCEEEEeeCC--CcEEEEECCCcceeEEEeecccCe-EEEEcCCCceEEEEeCCCeEEEEEcCCCceeeE
Q 008467          318 PIFSLKWNKKGDYLLTGSCD--KTAIVWDVKTEEWKQQFEFHSGPT-LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKT  394 (564)
Q Consensus       318 ~V~~l~~~~~~~~l~s~s~D--~~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~  394 (564)
                      -..+|.|++ +..+.+.+.+  .+|+.+|+.+++............ ..+...++..+...-.++.++++|..+.+.+.+
T Consensus        22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~t  100 (243)
T 3mbr_X           22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRAR  100 (243)
T ss_dssp             CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred             ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEE
Confidence            356889986 4455555554  489999999999988876554332 334555677788878899999999999998888


Q ss_pred             ecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeeccccc-----ccEEEEEEccCCCCCCCCCCcEEEEEEe
Q 008467          395 FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHS-----KEIYTIRWSPTGSGTNNPNQQLILASAS  469 (564)
Q Consensus       395 ~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~i~~~p~~~~~~~~~~~~~l~s~s  469 (564)
                      +.-.. .-..+++  +++.|+.+..++.|.++|..+.+.+..+....     ..+..+.|. +|         .+.+..-
T Consensus       101 i~~~~-~Gwglt~--dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G---------~lyanvw  167 (243)
T 3mbr_X          101 FRYPG-EGWALTS--DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NG---------ELLANVW  167 (243)
T ss_dssp             EECSS-CCCEEEE--CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT---------EEEEEET
T ss_pred             EeCCC-CceEEee--CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CC---------EEEEEEC
Confidence            76432 2234553  55555555558899999999988776654321     234455654 33         2455555


Q ss_pred             CCCeEEEEeCCCCeEEEEEeCC-------------CCCEEEEEEcCCCCEEEEEe
Q 008467          470 FDSTVKLWDVELGKLLYSLNGH-------------REPVYSLAFSPTGEYLASGS  511 (564)
Q Consensus       470 ~dg~i~iwd~~~~~~~~~~~~h-------------~~~i~~~~~spdg~~lasgs  511 (564)
                      .+..|.+.|.++|+.+..+.-.             ..-.+.|||+|+++.|...+
T Consensus       168 ~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          168 LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            6889999999999998877521             12468899999877665554

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.57  E-value=3.2e-05  Score=70.96  Aligned_cols=178  Identities=9%  Similarity=0.014  Sum_probs=124.0

Q ss_pred             EEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeeccccc
Q 008467          362 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHS  441 (564)
Q Consensus       362 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~  441 (564)
                      ..+.+.++..+.+.+.++.|+++|..+++.+..+......-..+++.. +++.+..-.++.+.+||..+.+.+.++....
T Consensus        58 qGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~  136 (268)
T 3nok_A           58 QGLVFHQGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTRYSG  136 (268)
T ss_dssp             EEEEEETTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEECSS
T ss_pred             ceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEeCCC
Confidence            455666777888899999999999999888776621111123455543 3555555578999999999999888776432


Q ss_pred             ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCC--C---CCEEEEEEcCCCCEEEEEeCCCcE
Q 008467          442 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH--R---EPVYSLAFSPTGEYLASGSLDKSM  516 (564)
Q Consensus       442 ~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h--~---~~i~~~~~spdg~~lasgs~dg~i  516 (564)
                       .-..+++  ++.         .|..+..++.|.++|..+.+.+.++.-.  .   ..++.+.|. +|+..|..-.+..|
T Consensus       137 -eGwGLt~--Dg~---------~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I  203 (268)
T 3nok_A          137 -EGWGLCY--WNG---------KLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDV  203 (268)
T ss_dssp             -CCCCEEE--ETT---------EEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEE
T ss_pred             -ceeEEec--CCC---------EEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeE
Confidence             2233442  232         2344446889999999999888776432  1   235677777 78766666568899


Q ss_pred             EEEeCCCCeEEEEEecC--------------CCEEEEEEccCCCEEEEEEc
Q 008467          517 HIWSLKEGKIVKTYTGN--------------GGIFEVCWNKEGDKIAACFA  553 (564)
Q Consensus       517 ~iw~~~~~~~~~~~~~~--------------~~i~~~~w~~~g~~la~~~~  553 (564)
                      .+.|.++|+++..+...              ...+.+||+|+++.|.+...
T Consensus       204 ~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          204 LEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             EEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             EEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            99999999999888532              24689999999876666543

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.57  E-value=3.8e-06  Score=90.13  Aligned_cols=269  Identities=15%  Similarity=0.124  Sum_probs=145.3

Q ss_pred             EEEECC-CCCEEEEEECCC-----------cEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467          221 ACAWSP-AGSLLASGSGDS-----------TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  288 (564)
Q Consensus       221 ~~~~sp-~~~~lasgs~D~-----------~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  288 (564)
                      ++++.| ++++++.|+.+.           .+.+||+.+++...      +..  ..      ........++++..+|+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~------~~~--~~------~~~~~~~~~~~~~~~g~  255 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSD------RTV--TV------TKHDMFCPGISMDGNGQ  255 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCC------CEE--EE------CSCCCSSCEEEECTTSC
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEe------Ccc--cC------CCCCCccccccCCCCCC
Confidence            556777 889999988643           57888887654211      110  00      01112233567788999


Q ss_pred             EEEEEeC-CCeEEEEECCCceeEeecCCC--CCEEEEEeCCCCCEEEEee-CC-----CcEEEEECCCcceeEEEeeccc
Q 008467          289 LLATGSY-DGQARIWSTNGDLKCTLSKHK--GPIFSLKWNKKGDYLLTGS-CD-----KTAIVWDVKTEEWKQQFEFHSG  359 (564)
Q Consensus       289 ~l~sg~~-dg~i~vw~~~~~~~~~~~~h~--~~V~~l~~~~~~~~l~s~s-~D-----~~v~iwd~~~~~~~~~~~~~~~  359 (564)
                      +++.|+. +..+.+||.....-..+....  ..-.++...++|+.++.|+ .+     ..+.+||+.+..|...-.....
T Consensus       256 lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~  335 (656)
T 1k3i_A          256 IVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVN  335 (656)
T ss_dssp             EEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSG
T ss_pred             EEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccc
Confidence            9999985 458999997543322221111  1112345567888888888 44     5799999998887653110000


Q ss_pred             CeE-----EEEcCCCceEEEEeCC---------CeEEEEEcCCCceeeEecCCC---------cceEEEEEC-CCCCEEE
Q 008467          360 PTL-----DVDWRNNVSFATSSTD---------NMIYVCKIGENRPIKTFAGHQ---------GEVNCVKWD-PTGSLLA  415 (564)
Q Consensus       360 ~~~-----~~~~~~~~~~~~~~~d---------~~i~~~~~~~~~~~~~~~~h~---------~~i~~v~~~-~~~~~la  415 (564)
                      +..     .+.-.++..++.++.+         ..+..|+.....-......+.         ..-.++.|. .++++++
T Consensus       336 p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v  415 (656)
T 1k3i_A          336 PMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILT  415 (656)
T ss_dssp             GGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEE
T ss_pred             ccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEE
Confidence            000     0111233344444433         345667766554222221111         122344443 3678888


Q ss_pred             EEeCCC-----------cEEEEeCCCCeeeeec--ccccccE-EEEEEccCCCCCCCCCCcEEEEEEeCC----------
Q 008467          416 SCSDDV-----------TAKIWNMKQDKYVHDL--REHSKEI-YTIRWSPTGSGTNNPNQQLILASASFD----------  471 (564)
Q Consensus       416 s~s~dg-----------~i~iwd~~~~~~~~~~--~~~~~~i-~~i~~~p~~~~~~~~~~~~~l~s~s~d----------  471 (564)
                      .|+.++           .+.+||..+.......  ..+.... .+....|++.         +++.|+.+          
T Consensus       416 ~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~---------i~v~GG~~~~~~~~~~~~  486 (656)
T 1k3i_A          416 FGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGS---------TFITGGQRRGIPFEDSTP  486 (656)
T ss_dssp             ECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSC---------EEEECCBSBCCTTCCCSB
T ss_pred             EeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCC---------EEEECCcccCcCcCCCCc
Confidence            887543           5778887765543322  1111111 2233345543         55666543          


Q ss_pred             -CeEEEEeCCCCeEEE--EEeCCCCCEEEEEEcCCCCEEEEEeC
Q 008467          472 -STVKLWDVELGKLLY--SLNGHREPVYSLAFSPTGEYLASGSL  512 (564)
Q Consensus       472 -g~i~iwd~~~~~~~~--~~~~h~~~i~~~~~spdg~~lasgs~  512 (564)
                       ..+.+||..+.+-..  .+...+....+..+.|||+.++.||.
T Consensus       487 ~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          487 VFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             ccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence             468999988765321  11111222234567899999999985

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.56  E-value=1.9e-05  Score=72.50  Aligned_cols=177  Identities=12%  Similarity=0.137  Sum_probs=120.7

Q ss_pred             EEEEcCCCceEEEEeCCC--eEEEEEcCCCceeeEecCCCcc-eEEEEECCCCCEE-EEEeCCCcEEEEeCCCCeeeeec
Q 008467          362 LDVDWRNNVSFATSSTDN--MIYVCKIGENRPIKTFAGHQGE-VNCVKWDPTGSLL-ASCSDDVTAKIWNMKQDKYVHDL  437 (564)
Q Consensus       362 ~~~~~~~~~~~~~~~~d~--~i~~~~~~~~~~~~~~~~h~~~-i~~v~~~~~~~~l-as~s~dg~i~iwd~~~~~~~~~~  437 (564)
                      ..+.+.++..+.+.+.++  .|+++|..+++.+..+.-.... --.++..  +..| +..-.++.+.+||..+.+.+.++
T Consensus        46 qGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~~ti  123 (262)
T 3nol_A           46 EGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQVRSF  123 (262)
T ss_dssp             EEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred             ceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEEEEE
Confidence            345555666677777765  8999999999887776543322 1234443  4444 44445889999999999988877


Q ss_pred             ccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCC--C---CCEEEEEEcCCCCEEEEEeC
Q 008467          438 REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH--R---EPVYSLAFSPTGEYLASGSL  512 (564)
Q Consensus       438 ~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h--~---~~i~~~~~spdg~~lasgs~  512 (564)
                      .... .-..++  +++.        .+++| ..++.|.++|..+.+.+.++.-.  .   ..++.+.|. +|+..|..-.
T Consensus       124 ~~~~-eG~glt--~dg~--------~L~~S-dGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~  190 (262)
T 3nol_A          124 NYDG-EGWGLT--HNDQ--------YLIMS-DGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQ  190 (262)
T ss_dssp             ECSS-CCCCEE--ECSS--------CEEEC-CSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred             ECCC-CceEEe--cCCC--------EEEEE-CCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEcc
Confidence            6432 112333  3332        23333 44788999999999888776432  1   235567786 7876666667


Q ss_pred             CCcEEEEeCCCCeEEEEEecC-------------CCEEEEEEccCCCEEEEEEc
Q 008467          513 DKSMHIWSLKEGKIVKTYTGN-------------GGIFEVCWNKEGDKIAACFA  553 (564)
Q Consensus       513 dg~i~iw~~~~~~~~~~~~~~-------------~~i~~~~w~~~g~~la~~~~  553 (564)
                      +..|.+.|.++|+++..+...             ...+.+||+|+++.|.+.+.
T Consensus       191 ~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            889999999999999888642             24589999999988877654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.54  E-value=0.00023  Score=69.72  Aligned_cols=242  Identities=9%  Similarity=-0.006  Sum_probs=149.0

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEe-eCCCcEEEEECCCcceeEEEee
Q 008467          278 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTG-SCDKTAIVWDVKTEEWKQQFEF  356 (564)
Q Consensus       278 V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~D~~v~iwd~~~~~~~~~~~~  356 (564)
                      .+|.+..+++ +|+.+ ....|+..+..+.....+......+.+++|++.+..|+-. ...+.|..+++........+..
T Consensus        36 ~~C~~~~~~~-~ll~~-~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~  113 (349)
T 3v64_C           36 RSCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST  113 (349)
T ss_dssp             SCEEESSSCC-EEEEE-CBSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred             CcccccccCc-eeEee-cccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC
Confidence            3455555543 33333 3345777777765444443334457899999876666544 4568899999877654333222


Q ss_pred             --cccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEE-EEEeCC-CcEEEEeCCCCe
Q 008467          357 --HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL-ASCSDD-VTAKIWNMKQDK  432 (564)
Q Consensus       357 --~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l-as~s~d-g~i~iwd~~~~~  432 (564)
                        ....-+.++|.....+.+-...+.|.+.+.........+...-...+.++++|.+..| ++-... +.|..+++....
T Consensus       114 ~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~  193 (349)
T 3v64_C          114 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG  193 (349)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred             CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC
Confidence              2233567888888888888888899999987654333333344567899999865554 444444 778888876543


Q ss_pred             eeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC
Q 008467          433 YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL  512 (564)
Q Consensus       433 ~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~  512 (564)
                      ....+...-.....|+++|.+.        .+..+-+..+.|..+|+........+.........|++ ..+..+.+-..
T Consensus       194 ~~~~~~~~~~~PnGla~d~~~~--------~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~  264 (349)
T 3v64_C          194 RRIIADTHLFWPNGLTIDYAGR--------RMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWH  264 (349)
T ss_dssp             CEESCCSSCSCEEEEEEETTTT--------EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETT
T ss_pred             cEEEEECCCCCcceEEEeCCCC--------EEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCC
Confidence            3222222233457889987643        24455556788999998743222223323345678888 34555555556


Q ss_pred             CCcEEEEeCCCCeEEEEE
Q 008467          513 DKSMHIWSLKEGKIVKTY  530 (564)
Q Consensus       513 dg~i~iw~~~~~~~~~~~  530 (564)
                      .+.|..++..+|+.+..+
T Consensus       265 ~~~V~~~~~~~G~~~~~i  282 (349)
T 3v64_C          265 TKSINSANKFTGKNQEII  282 (349)
T ss_dssp             TTEEEEEETTTCCSCEEE
T ss_pred             CCeEEEEEccCCCccEEe
Confidence            788988887677655544

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.51  E-value=5.3e-05  Score=79.55  Aligned_cols=229  Identities=14%  Similarity=0.105  Sum_probs=139.8

Q ss_pred             CCEEEEeeCCCcEEEEECCCcceeEEEeecc---------cCeEEEEcCCCc-eEEEEe------CCCeEEEEEcCCCce
Q 008467          328 GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS---------GPTLDVDWRNNV-SFATSS------TDNMIYVCKIGENRP  391 (564)
Q Consensus       328 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~------~d~~i~~~~~~~~~~  391 (564)
                      +..++.++.|+.|..+|..+++.+-.+....         .+++.-.-.+.. .++.++      .++.|+.+|..+++.
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~  196 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE  196 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence            5678888999999999999998776554322         122211100111 333332      367888888877765


Q ss_pred             eeEecCCCc-----------------------------------------ceEEEEECCCCCEEEEEeC-----------
Q 008467          392 IKTFAGHQG-----------------------------------------EVNCVKWDPTGSLLASCSD-----------  419 (564)
Q Consensus       392 ~~~~~~h~~-----------------------------------------~i~~v~~~~~~~~las~s~-----------  419 (564)
                      +-.+.....                                         .-..++++|...+++.++.           
T Consensus       197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~  276 (582)
T 1flg_A          197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART  276 (582)
T ss_dssp             EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred             EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence            443321100                                         0023566777777776653           


Q ss_pred             ---------C----CcEEEEeCCCCeeeeeccc--cc--------ccEEEEEEc-cCCCCCCCCCCcEEEEEEeCCCeEE
Q 008467          420 ---------D----VTAKIWNMKQDKYVHDLRE--HS--------KEIYTIRWS-PTGSGTNNPNQQLILASASFDSTVK  475 (564)
Q Consensus       420 ---------d----g~i~iwd~~~~~~~~~~~~--~~--------~~i~~i~~~-p~~~~~~~~~~~~~l~s~s~dg~i~  475 (564)
                               |    +.|..+|.++++.+-.++.  |.        .++.. ... .+|.      ...+++.++.+|.++
T Consensus       277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~-~~~~~~G~------~~~~v~~~~~~G~l~  349 (582)
T 1flg_A          277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLF-DYKAKDGK------IVKATAHADRNGFFY  349 (582)
T ss_dssp             CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEE-EEECSSSC------EEEEEEEECTTSEEE
T ss_pred             cCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEE-eeecCCCC------EEEEEEEECCCceEE
Confidence                     2    5899999999988766542  21        11111 110 1221      013677899999999


Q ss_pred             EEeCCCCeEEEEEeCCC-------------CCE--------------------------------EEEEEcCCCCEEEEE
Q 008467          476 LWDVELGKLLYSLNGHR-------------EPV--------------------------------YSLAFSPTGEYLASG  510 (564)
Q Consensus       476 iwd~~~~~~~~~~~~h~-------------~~i--------------------------------~~~~~spdg~~lasg  510 (564)
                      ++|.++|+.+.......             .++                                ..++|+|+...+.+.
T Consensus       350 ~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~  429 (582)
T 1flg_A          350 VVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVP  429 (582)
T ss_dssp             EEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEE
T ss_pred             EEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEe
Confidence            99999999987765331             011                                135677765554432


Q ss_pred             e---------------------------------CCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcE
Q 008467          511 S---------------------------------LDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTV  557 (564)
Q Consensus       511 s---------------------------------~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v  557 (564)
                      .                                 .+|.|..||+.+|+.+..+.....+..-.....|..+.++..|+.+
T Consensus       430 ~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l  509 (582)
T 1flg_A          430 ANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYF  509 (582)
T ss_dssp             EECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEE
T ss_pred             chhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcE
Confidence            2                                 3688999999999998877654333222223357788888899999


Q ss_pred             EEEEee
Q 008467          558 CVLDFR  563 (564)
Q Consensus       558 ~v~~~~  563 (564)
                      +.||.+
T Consensus       510 ~A~D~~  515 (582)
T 1flg_A          510 KAFDAK  515 (582)
T ss_dssp             EEEETT
T ss_pred             EEEECC
Confidence            988864

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.47  E-value=0.00014  Score=66.16  Aligned_cols=179  Identities=11%  Similarity=0.064  Sum_probs=123.1

Q ss_pred             eEEEEcCCCceEEEEeCC--CeEEEEEcCCCceeeEecCCCcc-eEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeec
Q 008467          361 TLDVDWRNNVSFATSSTD--NMIYVCKIGENRPIKTFAGHQGE-VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL  437 (564)
Q Consensus       361 ~~~~~~~~~~~~~~~~~d--~~i~~~~~~~~~~~~~~~~h~~~-i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~  437 (564)
                      +..+.+.++..+.+.+.+  ..|+++|..+++.+....-.... --.++.. .+++.+..-.++.+.+||..+.+.+.++
T Consensus        23 tqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~~~~ti  101 (243)
T 3mbr_X           23 TEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGFVYDLATLTPRARF  101 (243)
T ss_dssp             EEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred             cccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEEEEECCcCcEEEEE
Confidence            345666676677777765  48999999999887766533221 1234443 2445555556899999999999988887


Q ss_pred             ccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCC-----CCEEEEEEcCCCCEEEEEeC
Q 008467          438 REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR-----EPVYSLAFSPTGEYLASGSL  512 (564)
Q Consensus       438 ~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-----~~i~~~~~spdg~~lasgs~  512 (564)
                      .... .-..+++  ++.        .+++| ..++.|.++|..+.+.+.++.-..     ..++-+.|. +|+..|..-.
T Consensus       102 ~~~~-~Gwglt~--dg~--------~L~vS-dgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~  168 (243)
T 3mbr_X          102 RYPG-EGWALTS--DDS--------HLYMS-DGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWL  168 (243)
T ss_dssp             ECSS-CCCEEEE--CSS--------CEEEE-CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred             eCCC-CceEEee--CCC--------EEEEE-CCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECC
Confidence            6433 2244443  332        23444 458899999999998887765321     245667765 7776666656


Q ss_pred             CCcEEEEeCCCCeEEEEEecC--------------CCEEEEEEccCCCEEEEEEc
Q 008467          513 DKSMHIWSLKEGKIVKTYTGN--------------GGIFEVCWNKEGDKIAACFA  553 (564)
Q Consensus       513 dg~i~iw~~~~~~~~~~~~~~--------------~~i~~~~w~~~g~~la~~~~  553 (564)
                      +..|.+.|.++|+++..+...              ...+.+||+|+++.|.+...
T Consensus       169 s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          169 TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            789999999999999888622              23589999999987776644

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.45  E-value=0.00025  Score=70.52  Aligned_cols=241  Identities=9%  Similarity=-0.000  Sum_probs=148.6

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEE-EeeCCCcEEEEECCCcceeEEEee--
Q 008467          280 TLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEF--  356 (564)
Q Consensus       280 ~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~--  356 (564)
                      |.+..+.+ +|+.+ ....|+..+..+.....+......+.+++|++.+..|+ +-...+.|..+++........+..  
T Consensus        81 C~~~~~~~-~l~~~-~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~  158 (386)
T 3v65_B           81 CKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL  158 (386)
T ss_dssp             EEECSSCC-EEEEE-CBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSC
T ss_pred             ECCccccc-eeEee-cCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCC
Confidence            44444433 33333 33567778877654444433445578999998666655 445667899999877654333221  


Q ss_pred             cccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEE-eCC-CcEEEEeCCCCeee
Q 008467          357 HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASC-SDD-VTAKIWNMKQDKYV  434 (564)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~-s~d-g~i~iwd~~~~~~~  434 (564)
                      ....-+.++|.....+++-...+.|.+.+.........+...-...+.++++|.+..|... ... +.|..+++......
T Consensus       159 ~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~  238 (386)
T 3v65_B          159 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR  238 (386)
T ss_dssp             SCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred             CCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcE
Confidence            1223467788888888888888888888876554333333344567899999876655444 344 67888887654332


Q ss_pred             eecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCC
Q 008467          435 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK  514 (564)
Q Consensus       435 ~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg  514 (564)
                      ..+...-.....|+++|.+.        .+..+-+..+.|..+|+........+.........|++ ..+..+.+-...+
T Consensus       239 ~~~~~~~~~PnGlavd~~~~--------~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~  309 (386)
T 3v65_B          239 IIADTHLFWPNGLTIDYAGR--------RMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTK  309 (386)
T ss_dssp             EEECSSCSCEEEEEEEGGGT--------EEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTT
T ss_pred             EEEECCCCCeeeEEEeCCCC--------EEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCC
Confidence            22222233457889987543        24455566788999998743322223323345678888 3455556666778


Q ss_pred             cEEEEeCCCCeEEEEEe
Q 008467          515 SMHIWSLKEGKIVKTYT  531 (564)
Q Consensus       515 ~i~iw~~~~~~~~~~~~  531 (564)
                      .|..++..+|+.+..+.
T Consensus       310 ~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          310 SINSANKFTGKNQEIIR  326 (386)
T ss_dssp             EEEEEETTTCCSCEEEE
T ss_pred             eEEEEECCCCcceEEEc
Confidence            89999977777655554

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.42  E-value=3.3e-05  Score=84.14  Aligned_cols=193  Identities=13%  Similarity=0.122  Sum_probs=112.9

Q ss_pred             CCcc-ceEEEEEC-CCCCEEEEEEC-C----CcEEEEeCCCC-CCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC
Q 008467          214 GHTS-EVCACAWS-PAGSLLASGSG-D----STARIWTIADG-TSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG  285 (564)
Q Consensus       214 ~h~~-~V~~~~~s-p~~~~lasgs~-D----~~i~iW~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~  285 (564)
                      +|.. .+...+|| |||++||.+.. +    ..|+++|+.++ ....    ..     +.          .....++|+|
T Consensus       170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~----~~-----~~----------~~~~~~~Wsp  230 (751)
T 2xe4_A          170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA----DK-----VS----------GTNGEIVWGP  230 (751)
T ss_dssp             TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC----CC-----EE----------EECSCCEECS
T ss_pred             CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC----cc-----cc----------CceeeEEEec
Confidence            4543 67889999 99998886542 2    35999999876 4210    00     00          0123578999


Q ss_pred             CCCEEEEEeCC-----CeEEEEECCCce---eEeec-CCCCCEEEEEeCCCCCEEEEeeCC---CcEEEEECCCc--ce-
Q 008467          286 EGTLLATGSYD-----GQARIWSTNGDL---KCTLS-KHKGPIFSLKWNKKGDYLLTGSCD---KTAIVWDVKTE--EW-  350 (564)
Q Consensus       286 ~g~~l~sg~~d-----g~i~vw~~~~~~---~~~~~-~h~~~V~~l~~~~~~~~l~s~s~D---~~v~iwd~~~~--~~-  350 (564)
                      ||+.|+....+     ..|.+++..+..   ...+. ....-..++.|+|+|++|+..+.+   ..|.++|+.++  .. 
T Consensus       231 Dg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~  310 (751)
T 2xe4_A          231 DHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNT  310 (751)
T ss_dssp             STTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCC
T ss_pred             CCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCce
Confidence            99888877765     257777776432   12222 223446788999999998765533   35788898775  23 


Q ss_pred             -eEEEeecccCeEEEEcCCCceE-EEEeCC----CeEEEEEcCCCceeeE-ecCCCc--ceEEEEECCCCCEEEEEeCCC
Q 008467          351 -KQQFEFHSGPTLDVDWRNNVSF-ATSSTD----NMIYVCKIGENRPIKT-FAGHQG--EVNCVKWDPTGSLLASCSDDV  421 (564)
Q Consensus       351 -~~~~~~~~~~~~~~~~~~~~~~-~~~~~d----~~i~~~~~~~~~~~~~-~~~h~~--~i~~v~~~~~~~~las~s~dg  421 (564)
                       .............++|..+..| +.+..+    ..|+.+++........ +..|..  .+..+.+. .+.++++...++
T Consensus       311 ~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g  389 (751)
T 2xe4_A          311 LEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAG  389 (751)
T ss_dssp             EEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETT
T ss_pred             eEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCC
Confidence             2222223445566665444444 333332    3677778764222122 223333  45566665 345667777788


Q ss_pred             cEEEE
Q 008467          422 TAKIW  426 (564)
Q Consensus       422 ~i~iw  426 (564)
                      ..+||
T Consensus       390 ~~~l~  394 (751)
T 2xe4_A          390 LTRIW  394 (751)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            65554

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.40  E-value=0.0018  Score=62.35  Aligned_cols=225  Identities=11%  Similarity=0.069  Sum_probs=135.7

Q ss_pred             CeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEE-EeeCCCcEEEEECCC----cceeEEEe--ecccCeEEEEcCCC
Q 008467          297 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKT----EEWKQQFE--FHSGPTLDVDWRNN  369 (564)
Q Consensus       297 g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~----~~~~~~~~--~~~~~~~~~~~~~~  369 (564)
                      ..|+..+..+.....+......+.++.|++.+..|+ +-...+.|..+++.+    ......+.  .....-+.++|...
T Consensus        10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~   89 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS   89 (316)
T ss_dssp             SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred             CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCC
Confidence            467777876543333333345678999998766655 445568899999876    22222221  12233567788888


Q ss_pred             ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC-C-CcEEEEeCCCCeeeeecccccccEEEE
Q 008467          370 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-D-VTAKIWNMKQDKYVHDLREHSKEIYTI  447 (564)
Q Consensus       370 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~-d-g~i~iwd~~~~~~~~~~~~~~~~i~~i  447 (564)
                      ..+++-...+.|.+++.........+.........++++|.+..|+.+.. . +.|...++............-.....+
T Consensus        90 ~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gl  169 (316)
T 1ijq_A           90 NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGI  169 (316)
T ss_dssp             EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEE
T ss_pred             eEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEE
Confidence            88888888899999988754433333333456789999986665544443 3 678888876433221112223345788


Q ss_pred             EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe--EEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 008467          448 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK--LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK  525 (564)
Q Consensus       448 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~  525 (564)
                      +++|.+.        .+..+-+..+.|..+|+....  .+............|++. .+..+.+-...+.|..++..+|+
T Consensus       170 a~d~~~~--------~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~  240 (316)
T 1ijq_A          170 TLDLLSG--------RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS  240 (316)
T ss_dssp             EEETTTT--------EEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred             EEeccCC--------EEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCc
Confidence            8887643        244555667899999987322  222211122345778885 35555666667899999987776


Q ss_pred             EEEEE
Q 008467          526 IVKTY  530 (564)
Q Consensus       526 ~~~~~  530 (564)
                      .+..+
T Consensus       241 ~~~~i  245 (316)
T 1ijq_A          241 DVNLL  245 (316)
T ss_dssp             CCEEE
T ss_pred             ceEEE
Confidence            55444

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.36  E-value=0.00038  Score=70.19  Aligned_cols=238  Identities=10%  Similarity=0.127  Sum_probs=141.3

Q ss_pred             CeEEEEECC-CCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCC-C---cEEEEECCCccee
Q 008467          277 DVTTLDWNG-EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD-K---TAIVWDVKTEEWK  351 (564)
Q Consensus       277 ~V~~l~~s~-~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D-~---~v~iwd~~~~~~~  351 (564)
                      ....|+|+| ++..|..+...+.|+.++..+.....+.........++|+++|++|+.+... +   ...+|-...+.+.
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~  217 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFK  217 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSC
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCcee
Confidence            457889998 3555555555588999998876555554455567899999999966665542 2   1222221222111


Q ss_pred             EEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECC-CCCEEEEEeCCCcEEEEeCCC
Q 008467          352 QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQ  430 (564)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~-~~~~las~s~dg~i~iwd~~~  430 (564)
                      ..                                    ..+..    ......++++| ++.++++-..++.|..++..+
T Consensus       218 ~~------------------------------------~~l~~----~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~  257 (430)
T 3tc9_A          218 VI------------------------------------TELTK----GQNCNGAETHPINGELYFNSWNAGQVFRYDFTT  257 (430)
T ss_dssp             SE------------------------------------EEEEE----CSSCCCEEECTTTCCEEEEETTTTEEEEEETTT
T ss_pred             ee------------------------------------eeecc----CCCceEEEEeCCCCEEEEEECCCCEEEEEECCC
Confidence            00                                    00001    12245678899 777777777788999999876


Q ss_pred             Ceeeeeccc-ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC--CeE--EEEEeCC--------------
Q 008467          431 DKYVHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL--GKL--LYSLNGH--------------  491 (564)
Q Consensus       431 ~~~~~~~~~-~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~--~~~--~~~~~~h--------------  491 (564)
                      ......+.. ....-..++|+|++.        .++++-...+.|..++...  +..  +..+.+.              
T Consensus       258 ~~~~~~~~~~~~~~P~gia~~pdG~--------~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a  329 (430)
T 3tc9_A          258 QETTPLFTIQDSGWEFHIQFHPSGN--------YAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKA  329 (430)
T ss_dssp             TEEEEEEECSSSSCCEEEEECTTSS--------EEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGC
T ss_pred             CcEEEEEEcCCCCcceeEEEcCCCC--------EEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcce
Confidence            654221111 112346789988874        3455556778899987652  222  1122111              


Q ss_pred             -CCCEE-EEEEc--------CCCCEEEEEeCCCcEEEEeCCCCeEEEEEec---------CC---------CEEEEEEcc
Q 008467          492 -REPVY-SLAFS--------PTGEYLASGSLDKSMHIWSLKEGKIVKTYTG---------NG---------GIFEVCWNK  543 (564)
Q Consensus       492 -~~~i~-~~~~s--------pdg~~lasgs~dg~i~iw~~~~~~~~~~~~~---------~~---------~i~~~~w~~  543 (564)
                       -.... .++..        ++|.++++=...++|+.++ .+|.+....-.         .+         ....|++++
T Consensus       330 ~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~  408 (430)
T 3tc9_A          330 RMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDE  408 (430)
T ss_dssp             BBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEET
T ss_pred             EeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEEC
Confidence             01123 45553        4566666666678899998 45654433311         11         368999999


Q ss_pred             C-CCEEEEEEcCCcEEEEEee
Q 008467          544 E-GDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       544 ~-g~~la~~~~~~~v~v~~~~  563 (564)
                      + |..+++-..+..|+.++..
T Consensus       409 ~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          409 ERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             TTTEEEEEEGGGTEEEEEEEC
T ss_pred             CCCEEEEEECCCCeEEEEccC
Confidence            5 6677777778889888763

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.35  E-value=2.7e-05  Score=84.76  Aligned_cols=225  Identities=11%  Similarity=0.064  Sum_probs=118.3

Q ss_pred             CeEEEEEC-CCCCEEEEEeC-CC----eEEEEECCCc-eeEeecCC-CCCEEEEEeCCCCCEEEEeeCCC-----cEEEE
Q 008467          277 DVTTLDWN-GEGTLLATGSY-DG----QARIWSTNGD-LKCTLSKH-KGPIFSLKWNKKGDYLLTGSCDK-----TAIVW  343 (564)
Q Consensus       277 ~V~~l~~s-~~g~~l~sg~~-dg----~i~vw~~~~~-~~~~~~~h-~~~V~~l~~~~~~~~l~s~s~D~-----~v~iw  343 (564)
                      .+...+|| |||++||.+.. +|    .|++++..+. ..  +..+ .....++.|+|+|+.|+....|.     .|.++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~--l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~  252 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT--IADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRH  252 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC--CCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe--CCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence            57788999 99998886543 33    4999998754 31  1111 11124678999999888776552     23334


Q ss_pred             ECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEec-CCCcceEEEEECCCCCEEEEEeC---
Q 008467          344 DVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDPTGSLLASCSD---  419 (564)
Q Consensus       344 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~h~~~i~~v~~~~~~~~las~s~---  419 (564)
                      ++.++..                                       .....+. .+......+.|+|||++|+..+.   
T Consensus       253 ~lgt~~~---------------------------------------~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~  293 (751)
T 2xe4_A          253 VMGKLQS---------------------------------------EDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPE  293 (751)
T ss_dssp             ETTSCGG---------------------------------------GCEEEEECCCTTCEEEEEECTTSSEEEEEEECSS
T ss_pred             ECCCCch---------------------------------------hcEEEEecCCCceEEEEEECCCCCEEEEEecCCC
Confidence            4332210                                       0111221 12233557899999998876553   


Q ss_pred             CCcEEEEeCCCC--ee-eeecc-cccccEEEEEEccCCCCCCCCCCcEEEEEEeCC----CeEEEEeCCCCeEEEE-EeC
Q 008467          420 DVTAKIWNMKQD--KY-VHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFD----STVKLWDVELGKLLYS-LNG  490 (564)
Q Consensus       420 dg~i~iwd~~~~--~~-~~~~~-~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d----g~i~iwd~~~~~~~~~-~~~  490 (564)
                      ...|.++|+.++  .. +..+. ......+++.|...+         .+++....+    ..|..+|+.++..... +..
T Consensus       294 ~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~---------~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~  364 (751)
T 2xe4_A          294 TAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS---------HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVD  364 (751)
T ss_dssp             CEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT---------EEEEEECTTTCTTCEEEEEETTSTTCCCCEEEC
T ss_pred             CceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCC---------EEEEEeCCCCCCCcEEEEEcCCCcccceeeEEC
Confidence            345778888764  22 02232 233444555543322         234444443    3677777764211122 333


Q ss_pred             CCC--CEEEEEEcCCCCE-EEEEeCCCc--EEEEeC-------CCCeEEEEEe--cCCCEEEEEE----ccCCCEEEEEE
Q 008467          491 HRE--PVYSLAFSPTGEY-LASGSLDKS--MHIWSL-------KEGKIVKTYT--GNGGIFEVCW----NKEGDKIAACF  552 (564)
Q Consensus       491 h~~--~i~~~~~spdg~~-lasgs~dg~--i~iw~~-------~~~~~~~~~~--~~~~i~~~~w----~~~g~~la~~~  552 (564)
                      +..  .+..+++.  +.+ +++...++.  |.++++       .+++.+..+.  ....+..++|    +++++.++..+
T Consensus       365 ~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~  442 (751)
T 2xe4_A          365 HSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEY  442 (751)
T ss_dssp             CCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEE
T ss_pred             CCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEE
Confidence            433  34455554  444 456667775  555564       3444133332  2233456655    44776555443


Q ss_pred             c
Q 008467          553 A  553 (564)
Q Consensus       553 ~  553 (564)
                      .
T Consensus       443 s  443 (751)
T 2xe4_A          443 S  443 (751)
T ss_dssp             E
T ss_pred             e
Confidence            3

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.30  E-value=0.00084  Score=61.83  Aligned_cols=201  Identities=9%  Similarity=0.161  Sum_probs=128.4

Q ss_pred             eecCCCCCEEEEEeCCCCCEEEE-eeCCCcEEEEECCCcceeEEEeecc-cCeEEEEcCCCceEE-EEeCCCeEEEEEcC
Q 008467          311 TLSKHKGPIFSLKWNKKGDYLLT-GSCDKTAIVWDVKTEEWKQQFEFHS-GPTLDVDWRNNVSFA-TSSTDNMIYVCKIG  387 (564)
Q Consensus       311 ~~~~h~~~V~~l~~~~~~~~l~s-~s~D~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~d~~i~~~~~~  387 (564)
                      .+.+-...+.+++|+|+++.|++ ...++.|...|+. ++..+.+.... ...-.+.+..+..|+ +.-.++.++++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            35566678999999998776654 6678889999987 77777765432 345566776666664 44567788888876


Q ss_pred             CCcee---eEec------CCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCC---Ceeeeecc-------cccccEEEEE
Q 008467          388 ENRPI---KTFA------GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ---DKYVHDLR-------EHSKEIYTIR  448 (564)
Q Consensus       388 ~~~~~---~~~~------~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~---~~~~~~~~-------~~~~~i~~i~  448 (564)
                      ....+   ....      ..+.....++|+|.++.|.++.+.....||.++.   ...+..+.       .+...+.+++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence            54421   2221      1234578999999997777777655555655431   11111110       1223456777


Q ss_pred             EccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCC---------CCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 008467          449 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR---------EPVYSLAFSPTGEYLASGSLDKSMHIW  519 (564)
Q Consensus       449 ~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~---------~~i~~~~~spdg~~lasgs~dg~i~iw  519 (564)
                      +.|...        .+++.......+.++|.. |+.+..+.-..         .....|+|.|+|+.+++ +..+.++.|
T Consensus       180 ~dp~tg--------~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f  249 (255)
T 3qqz_A          180 FNQQKN--------TLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRF  249 (255)
T ss_dssp             EETTTT--------EEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEE
T ss_pred             EcCCCC--------eEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEE
Confidence            777532        456667778899999976 66555443211         24688999999985555 777777777


Q ss_pred             eCC
Q 008467          520 SLK  522 (564)
Q Consensus       520 ~~~  522 (564)
                      ...
T Consensus       250 ~~~  252 (255)
T 3qqz_A          250 TPQ  252 (255)
T ss_dssp             EC-
T ss_pred             Eec
Confidence            643

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.29  E-value=0.0026  Score=63.35  Aligned_cols=227  Identities=11%  Similarity=0.068  Sum_probs=140.6

Q ss_pred             CCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEe-eCCCcEEEEECCCc----ceeEEEe--ecccCeEEEEcCC
Q 008467          296 DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTG-SCDKTAIVWDVKTE----EWKQQFE--FHSGPTLDVDWRN  368 (564)
Q Consensus       296 dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~D~~v~iwd~~~~----~~~~~~~--~~~~~~~~~~~~~  368 (564)
                      ...|+..+..+.....+......+.+|+|++.+..|+-. ...+.|..+++...    .....+.  .....-+.++|..
T Consensus        91 ~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~  170 (400)
T 3p5b_L           91 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH  170 (400)
T ss_dssp             TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTT
T ss_pred             cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecC
Confidence            467888887766444444455678899999876666554 45678888888652    1222222  1122346788888


Q ss_pred             CceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEe-C-CCcEEEEeCCCCeeeeecccccccEEE
Q 008467          369 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS-D-DVTAKIWNMKQDKYVHDLREHSKEIYT  446 (564)
Q Consensus       369 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s-~-dg~i~iwd~~~~~~~~~~~~~~~~i~~  446 (564)
                      ...+++-...+.|.+.+.........+...-.....|+++|.+..|+... . .+.|...++........+...-.....
T Consensus       171 ~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~g  250 (400)
T 3p5b_L          171 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNG  250 (400)
T ss_dssp             TEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEE
T ss_pred             CceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEE
Confidence            88888888888999988876554444443445578999999766555443 2 367888887754433222222245578


Q ss_pred             EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeC--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 008467          447 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG--HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG  524 (564)
Q Consensus       447 i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~  524 (564)
                      |+++|.+.        .+..+-+..+.|..+|+........+..  .......|++. .+..+.+-...+.|..++..+|
T Consensus       251 lavd~~~~--------~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G  321 (400)
T 3p5b_L          251 ITLDLLSG--------RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG  321 (400)
T ss_dssp             EEEETTTT--------EEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSC
T ss_pred             EEEEeCCC--------EEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCC
Confidence            88887653        2444445678899999864322222222  22345677773 3345555566788999998777


Q ss_pred             eEEEEEe
Q 008467          525 KIVKTYT  531 (564)
Q Consensus       525 ~~~~~~~  531 (564)
                      +.+..+.
T Consensus       322 ~~~~~i~  328 (400)
T 3p5b_L          322 SDVNLLA  328 (400)
T ss_dssp             CCCEEEE
T ss_pred             CceEEEe
Confidence            6555543

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.26  E-value=0.00035  Score=70.46  Aligned_cols=235  Identities=12%  Similarity=0.140  Sum_probs=140.3

Q ss_pred             CeEEEEECCC--CCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCC----c-EEEEECCCcc
Q 008467          277 DVTTLDWNGE--GTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK----T-AIVWDVKTEE  349 (564)
Q Consensus       277 ~V~~l~~s~~--g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~----~-v~iwd~~~~~  349 (564)
                      ....++|+|+  +..|..+...+.|+.++........+........+++|+++|+ |+.+...+    . +...+.. +.
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~-~~  217 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRA-SG  217 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGG-GT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECC-CC
Confidence            4568899984  3334444444899999985544444444455678999999999 44444322    1 1111111 10


Q ss_pred             eeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECC-CCCEEEEEeCCCcEEEEeC
Q 008467          350 WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNM  428 (564)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~-~~~~las~s~dg~i~iwd~  428 (564)
                      +..                                    .   ..+. .-.....++++| ++.++++-..++.|+.++.
T Consensus       218 ~~~------------------------------------~---~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~  257 (433)
T 4hw6_A          218 FTE------------------------------------R---LSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDP  257 (433)
T ss_dssp             TCC------------------------------------E---EEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECT
T ss_pred             eec------------------------------------c---cccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEEC
Confidence            000                                    0   0000 112344678888 6777766667888999988


Q ss_pred             CCCeeeeeccc--ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC--CCeE--EEEEeCC-----------
Q 008467          429 KQDKYVHDLRE--HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE--LGKL--LYSLNGH-----------  491 (564)
Q Consensus       429 ~~~~~~~~~~~--~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~--~~~~--~~~~~~h-----------  491 (564)
                      .++.....+..  ....-..++|+|++.        .+.++-...+.|+.++..  ++..  ...+.+.           
T Consensus       258 ~~g~~~~~~~~~~~~~~~~~ia~dpdG~--------~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~  329 (433)
T 4hw6_A          258 ATGTLTEEEVMMDTKGSNFHIVWHPTGD--------WAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMG  329 (433)
T ss_dssp             TTCCEEEEEEECSCCSSCEEEEECTTSS--------EEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEG
T ss_pred             CCCeEEEEEeccCCCCCcccEEEeCCCC--------EEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcc
Confidence            76654222211  112234688888764        345555667889998765  2321  1122111           


Q ss_pred             ----CCCEEEEEE---------cCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC-------------------CCEEEE
Q 008467          492 ----REPVYSLAF---------SPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-------------------GGIFEV  539 (564)
Q Consensus       492 ----~~~i~~~~~---------spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~-------------------~~i~~~  539 (564)
                          -.....+++         .++|.++++-...++|+.++. +|.+. ++.+.                   .....|
T Consensus       330 ~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~gi  407 (433)
T 4hw6_A          330 TGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSI  407 (433)
T ss_dssp             GGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEE
T ss_pred             cceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEE
Confidence                123577999         788888887777889999985 56543 33221                   126789


Q ss_pred             EEc-cCCCEEEEEEcCCcEEEEEee
Q 008467          540 CWN-KEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       540 ~w~-~~g~~la~~~~~~~v~v~~~~  563 (564)
                      +++ ++|+.+++=..+.+|+.++..
T Consensus       408 avd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          408 AYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EEECCCCEEEEEeCCCCEEEEEecC
Confidence            999 677777777788899988764

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.25  E-value=0.0018  Score=62.25  Aligned_cols=226  Identities=9%  Similarity=0.018  Sum_probs=137.2

Q ss_pred             CCeEEEEECCCce--eEeecCCCCCEEEEEeCCCCCEEE-EeeCCCcEEEEECCCcceeE-EE--eecccCeEEEEcCCC
Q 008467          296 DGQARIWSTNGDL--KCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQ-QF--EFHSGPTLDVDWRNN  369 (564)
Q Consensus       296 dg~i~vw~~~~~~--~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~-~~--~~~~~~~~~~~~~~~  369 (564)
                      ...|+..+.++..  ...+......+.++.|++.+..|+ +-...+.|..+++....... .+  ......-+.++|...
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g   91 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE   91 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred             cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence            4578888877642  111211223467899998665554 54566789999987653221 11  122333577888888


Q ss_pred             ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEe--CCCcEEEEeCCCCeeeeecccccccEEEE
Q 008467          370 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS--DDVTAKIWNMKQDKYVHDLREHSKEIYTI  447 (564)
Q Consensus       370 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s--~dg~i~iwd~~~~~~~~~~~~~~~~i~~i  447 (564)
                      ..+.+-...+.|.+++.........+.........++++|.+..|+.+.  ..+.|...++........+...-..-..+
T Consensus        92 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pngl  171 (318)
T 3sov_A           92 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGL  171 (318)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEE
T ss_pred             eEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEE
Confidence            8888888888999999876543333334445678999998766555544  25778888776433222122222345788


Q ss_pred             EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 008467          448 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV  527 (564)
Q Consensus       448 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~  527 (564)
                      +++|.+.        .+..+-+..+.|..+|+........+.+.......+++.. +..+.+-...+.|..++..+|+..
T Consensus       172 avd~~~~--------~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~  242 (318)
T 3sov_A          172 TLDYEEQ--------KLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGL  242 (318)
T ss_dssp             EEETTTT--------EEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSC
T ss_pred             EEeccCC--------EEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCce
Confidence            8988543        2444556678899999863222212222334467788753 344455556788999998777654


Q ss_pred             EEE
Q 008467          528 KTY  530 (564)
Q Consensus       528 ~~~  530 (564)
                      ..+
T Consensus       243 ~~i  245 (318)
T 3sov_A          243 REI  245 (318)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.21  E-value=0.0044  Score=59.48  Aligned_cols=213  Identities=13%  Similarity=0.047  Sum_probs=126.8

Q ss_pred             CCcEEEEECCCcceeEEEeecccCeEEEEcC--CCceEEEEeCCCeEEEEEcCC----CceeeEecCCCcceEEEEECCC
Q 008467          337 DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGE----NRPIKTFAGHQGEVNCVKWDPT  410 (564)
Q Consensus       337 D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~----~~~~~~~~~h~~~i~~v~~~~~  410 (564)
                      ...|+..|+.+......+. .......+.|.  .+..|.+....+.|+.++...    ......+...-.....+++++.
T Consensus         9 ~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~   87 (316)
T 1ijq_A            9 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI   87 (316)
T ss_dssp             BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred             CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeec
Confidence            3568888888776554332 22334555554  456777777788999988765    2222223222234578899875


Q ss_pred             C-CEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC-CeEEEEeCCCCeEEEEE
Q 008467          411 G-SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-STVKLWDVELGKLLYSL  488 (564)
Q Consensus       411 ~-~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~  488 (564)
                      + +++++-...+.|.+.++........+.........++..|.+.        .++.+.... +.|...++. |+....+
T Consensus        88 ~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g--------~ly~~d~~~~~~I~~~~~d-G~~~~~~  158 (316)
T 1ijq_A           88 HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHG--------FMYWTDWGTPAKIKKGGLN-GVDIYSL  158 (316)
T ss_dssp             TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTT--------EEEEEECSSSCEEEEEETT-SCCEEEE
T ss_pred             CCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCC--------EEEEEccCCCCeEEEEcCC-CCCeEEE
Confidence            4 5556666788999999875543222222234557888887543        233443333 688888876 4333333


Q ss_pred             -eCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEEEEE-ec---CCCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467          489 -NGHREPVYSLAFSPTGEYLASGS-LDKSMHIWSLKEGKIVKTY-TG---NGGIFEVCWNKEGDKIAACFANHTVCVLD  561 (564)
Q Consensus       489 -~~h~~~i~~~~~spdg~~lasgs-~dg~i~iw~~~~~~~~~~~-~~---~~~i~~~~w~~~g~~la~~~~~~~v~v~~  561 (564)
                       ...-...+.|+++|++..|..+. ..+.|..+++.... ...+ ..   -.....+++. .+..+.+-..++.|..+|
T Consensus       159 ~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~  235 (316)
T 1ijq_A          159 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSAN  235 (316)
T ss_dssp             ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred             EECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEe
Confidence             22234578999999877665554 56789999987433 2333 21   2346788885 355555666677777776

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.19  E-value=0.00015  Score=77.66  Aligned_cols=263  Identities=10%  Similarity=0.029  Sum_probs=144.1

Q ss_pred             EEEECC-CCCEEEEEeCCC-----------eEEEEECCCcee---Eee-cCCCCCEEEEEeCCCCCEEEEeeC-CCcEEE
Q 008467          280 TLDWNG-EGTLLATGSYDG-----------QARIWSTNGDLK---CTL-SKHKGPIFSLKWNKKGDYLLTGSC-DKTAIV  342 (564)
Q Consensus       280 ~l~~s~-~g~~l~sg~~dg-----------~i~vw~~~~~~~---~~~-~~h~~~V~~l~~~~~~~~l~s~s~-D~~v~i  342 (564)
                      .+++.+ +|++++.|+.+.           .+.+||......   ..+ ..+..-..++++..++..++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            455666 889999988653           578888654321   112 122223335677788999888884 468999


Q ss_pred             EECCCcceeEEEeecccCe-EEEEcC-CCceEEEEe-CC-----CeEEEEEcCCCceeeE-------ecCCCcceEEEEE
Q 008467          343 WDVKTEEWKQQFEFHSGPT-LDVDWR-NNVSFATSS-TD-----NMIYVCKIGENRPIKT-------FAGHQGEVNCVKW  407 (564)
Q Consensus       343 wd~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~-~d-----~~i~~~~~~~~~~~~~-------~~~h~~~i~~v~~  407 (564)
                      ||+.+.+|...-....... ...... ++..++.++ .+     ..+.+||..++.-...       +.....   ...+
T Consensus       270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~---~~~~  346 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK---QGLY  346 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCT---TGGG
T ss_pred             ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccc---ccee
Confidence            9999988776433322211 222233 666777776 33     4678888766532111       000000   0112


Q ss_pred             CCCCCEEEEEeCCC---------cEEEEeCCCCeeeeecccccc---------cEEEEEEccCCCCCCCCCCcEEEEEEe
Q 008467          408 DPTGSLLASCSDDV---------TAKIWNMKQDKYVHDLREHSK---------EIYTIRWSPTGSGTNNPNQQLILASAS  469 (564)
Q Consensus       408 ~~~~~~las~s~dg---------~i~iwd~~~~~~~~~~~~~~~---------~i~~i~~~p~~~~~~~~~~~~~l~s~s  469 (564)
                      ..++.+++.|+.+|         .+..||..+.........+..         .-.++.+...+       . .+++.|+
T Consensus       347 ~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~-------~-~i~v~GG  418 (656)
T 1k3i_A          347 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVK-------G-KILTFGG  418 (656)
T ss_dssp             TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTT-------T-EEEEECC
T ss_pred             ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCC-------C-eEEEEeC
Confidence            23455555555444         467788776653322211110         11333332211       1 3556666


Q ss_pred             CCC-----------eEEEEeCCCCeEEEEE--eCCCCC-EEEEEEcCCCCEEEEEeCC-----------CcEEEEeCCCC
Q 008467          470 FDS-----------TVKLWDVELGKLLYSL--NGHREP-VYSLAFSPTGEYLASGSLD-----------KSMHIWSLKEG  524 (564)
Q Consensus       470 ~dg-----------~i~iwd~~~~~~~~~~--~~h~~~-i~~~~~spdg~~lasgs~d-----------g~i~iw~~~~~  524 (564)
                      .++           .|.+||..+..-....  ...... -.+++..|+|++++.||.+           ..+.+||..+.
T Consensus       419 ~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~  498 (656)
T 1k3i_A          419 SPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQD  498 (656)
T ss_dssp             BSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGT
T ss_pred             CCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCC
Confidence            432           6888888766543222  111111 2345677899999999864           46899998776


Q ss_pred             eEEEEEecC---CCEEEEEEccCCCEEEEEEc
Q 008467          525 KIVKTYTGN---GGIFEVCWNKEGDKIAACFA  553 (564)
Q Consensus       525 ~~~~~~~~~---~~i~~~~w~~~g~~la~~~~  553 (564)
                      +-...-...   .........++|+.+++|+.
T Consensus       499 ~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          499 TFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             EEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             ceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence            532211111   11223456799999999874

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.18  E-value=0.0057  Score=59.04  Aligned_cols=270  Identities=9%  Similarity=0.030  Sum_probs=143.4

Q ss_pred             cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC
Q 008467          217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD  296 (564)
Q Consensus       217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d  296 (564)
                      ..+.++.|.+.+..++. +.+|.|..  ..++.....            ............+.++.+++ +..++ ++..
T Consensus        36 ~~~~~v~~~~~~~~~~~-G~~g~i~~--s~DgG~tW~------------~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~   98 (327)
T 2xbg_A           36 ATILDMSFIDRHHGWLV-GVNATLME--TRDGGQTWE------------PRTLVLDHSDYRFNSVSFQG-NEGWI-VGEP   98 (327)
T ss_dssp             SCEEEEEESSSSCEEEE-ETTTEEEE--ESSTTSSCE------------ECCCCCSCCCCEEEEEEEET-TEEEE-EEET
T ss_pred             CcEEEEEECCCCcEEEE-cCCCeEEE--eCCCCCCCe------------ECCCCCCCCCccEEEEEecC-CeEEE-EECC
Confidence            46889999888887774 56776532  222211000            00000011234578888876 45444 4556


Q ss_pred             CeEEEEECC-CceeEeec---CCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceE
Q 008467          297 GQARIWSTN-GDLKCTLS---KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF  372 (564)
Q Consensus       297 g~i~vw~~~-~~~~~~~~---~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (564)
                      |.|.. ..+ |..-....   .+.+.+..+.+.+++..++++ .++.|..-+-....+..........+..+.+.++..+
T Consensus        99 g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~  176 (327)
T 2xbg_A           99 PIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSGEY  176 (327)
T ss_dssp             TEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEESSTTSSEEEEECSCCCCEEEEEECTTSCE
T ss_pred             CeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEEcCCCCCCEEeecCCCcceEEEEEcCCCcE
Confidence            65544 333 33222221   244567888877776655554 4555433211223344433333345666666655556


Q ss_pred             EEEeCCCeEEEEEcCCC---ceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecc----cccccEE
Q 008467          373 ATSSTDNMIYVCKIGEN---RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR----EHSKEIY  445 (564)
Q Consensus       373 ~~~~~d~~i~~~~~~~~---~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~----~~~~~i~  445 (564)
                      +..+.++.++.-.-..+   .++  -.+....+..+.+.+++.+++ ++.+|.+.+++...++.-..+.    .+...++
T Consensus       177 ~~~g~~G~~~~S~d~gG~tW~~~--~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~  253 (327)
T 2xbg_A          177 VAVSSRGSFYSTWEPGQTAWEPH--NRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFL  253 (327)
T ss_dssp             EEEETTSSEEEEECTTCSSCEEE--ECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEE
T ss_pred             EEEECCCcEEEEeCCCCCceeEC--CCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceE
Confidence            55666666655432211   222  123455788899999988664 5567887776432222211121    1223578


Q ss_pred             EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEe---CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008467          446 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN---GHREPVYSLAFSPTGEYLASGSLDKSMHIWS  520 (564)
Q Consensus       446 ~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~h~~~i~~~~~spdg~~lasgs~dg~i~iw~  520 (564)
                      .+.+.|.+.         ++++ +.+|.| ++..+.|+.-..+.   .....++++.|.+++. +++++.+|.|.-++
T Consensus       254 ~v~~~~~~~---------~~~~-g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          254 DLAYRTPNE---------VWLA-GGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV  319 (327)
T ss_dssp             EEEESSSSC---------EEEE-ESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred             EEEecCCCE---------EEEE-eCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence            888877542         4444 457777 44555454333333   1235678899986555 55566788776665

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.18  E-value=0.0018  Score=61.97  Aligned_cols=213  Identities=12%  Similarity=0.107  Sum_probs=124.2

Q ss_pred             cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC
Q 008467          217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD  296 (564)
Q Consensus       217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d  296 (564)
                      .....++|+|+++++++-..++.|..|+.....            ......       ......+++.++|+++++....
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~------------~~~~~~-------~~~p~gia~~~dG~l~vad~~~   92 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ------------QIHATV-------EGKVSGLAFTSNGDLVATGWNA   92 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE------------EEEEEC-------SSEEEEEEECTTSCEEEEEECT
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCce------------EEEEeC-------CCCceeEEEcCCCcEEEEeccC
Confidence            346789999999988877788899888864321            001110       1347889999999976665443


Q ss_pred             -C-eEEEEEC-CCceeEeec-CCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEE-Ee---------ecccCeE
Q 008467          297 -G-QARIWST-NGDLKCTLS-KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ-FE---------FHSGPTL  362 (564)
Q Consensus       297 -g-~i~vw~~-~~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~-~~---------~~~~~~~  362 (564)
                       + .|..++. .+.+..... ........++..+.+..+++-..++.|.++|..++..... ..         .......
T Consensus        93 ~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pn  172 (306)
T 2p4o_A           93 DSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAAN  172 (306)
T ss_dssp             TSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEE
T ss_pred             CcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCC
Confidence             2 3555554 444332221 1112234455455554455555688899999765421110 00         0001122


Q ss_pred             EEEcCCCceEEEEeCCCeEEEEEcCC-Cce--eeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCee--eeec
Q 008467          363 DVDWRNNVSFATSSTDNMIYVCKIGE-NRP--IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY--VHDL  437 (564)
Q Consensus       363 ~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~--~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~--~~~~  437 (564)
                      .+.......+++....+.|+++++.. +..  ...+.. ......++++++|+++++....+.|.+++.. ++.  +..+
T Consensus       173 gis~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~  250 (306)
T 2p4o_A          173 GLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQA  250 (306)
T ss_dssp             EEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECG
T ss_pred             CcCcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeec
Confidence            33333445667777888999998864 221  122211 1235568899999988888888899999975 443  2233


Q ss_pred             ccccccEEEEEEc
Q 008467          438 REHSKEIYTIRWS  450 (564)
Q Consensus       438 ~~~~~~i~~i~~~  450 (564)
                      .......++++|.
T Consensus       251 ~~~~~~p~~~a~~  263 (306)
T 2p4o_A          251 EQGVIGSTAVAFG  263 (306)
T ss_dssp             GGTCTTEEEEEEC
T ss_pred             ccccCCceEEEEe
Confidence            3333457888887

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.16  E-value=0.0082  Score=63.34  Aligned_cols=327  Identities=9%  Similarity=0.014  Sum_probs=171.1

Q ss_pred             cceEEEEECCCCCEEEEE-ECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC-EEEEEe
Q 008467          217 SEVCACAWSPAGSLLASG-SGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT-LLATGS  294 (564)
Q Consensus       217 ~~V~~~~~sp~~~~lasg-s~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~-~l~sg~  294 (564)
                      ..+.+++|++.+..|+.. ...+.|..+++......         ...+       .........+++.+.+. +.++-.
T Consensus        40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~---------~~v~-------~~~~~~P~GlAvD~~~~~ly~~d~  103 (619)
T 3s94_A           40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV---------QNVV-------VSGLLSPDGLACDWLGEKLYWTDS  103 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----C---------EEEE-------CSSCSCEEEEEEETTTTEEEEEET
T ss_pred             CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCce---------EEEE-------eCCCCCcCeEEEEecCCEEEEEeC
Confidence            457789999976655544 45677888876532100         0000       01123467888888554 555555


Q ss_pred             CCCeEEEEECCCceeEeec-CCCCCEEEEEeCCCCCEEEEeeC--CCcEEEEECCCcceeEEEeec--ccCeEEEEcCCC
Q 008467          295 YDGQARIWSTNGDLKCTLS-KHKGPIFSLKWNKKGDYLLTGSC--DKTAIVWDVKTEEWKQQFEFH--SGPTLDVDWRNN  369 (564)
Q Consensus       295 ~dg~i~vw~~~~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~s~--D~~v~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~  369 (564)
                      ..+.|.+.+.+|.....+. ..-....+|++.|.+.+|+....  .+.|...++............  ...-+.++....
T Consensus       104 ~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~  183 (619)
T 3s94_A          104 ETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQ  183 (619)
T ss_dssp             TTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTT
T ss_pred             CCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCC
Confidence            6789999999887654443 33344567889887666665553  345665665543322222111  112344555556


Q ss_pred             ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeeccccccc------
Q 008467          370 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE------  443 (564)
Q Consensus       370 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~------  443 (564)
                      ..+++-...+.|+.+++..........+.......+++..+ .++++-...+.|...|..+++....+......      
T Consensus       184 ~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v  262 (619)
T 3s94_A          184 KLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHA  262 (619)
T ss_dssp             EEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEE
T ss_pred             EEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEE
Confidence            66677667777888877654433222222223346677655 55555556778888887665432222110000      


Q ss_pred             -------------------E--EEE---------EEccCCC-------CCCCCCCcEEEEEEeCCCeEEEEeCCCCeEE-
Q 008467          444 -------------------I--YTI---------RWSPTGS-------GTNNPNQQLILASASFDSTVKLWDVELGKLL-  485 (564)
Q Consensus       444 -------------------i--~~i---------~~~p~~~-------~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-  485 (564)
                                         +  .|+         +..|.|.       ....... .+|+.+. .+.|+..++...... 
T Consensus       263 ~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~-~~Ll~~~-~~~i~~i~l~~~~~~~  340 (619)
T 3s94_A          263 FSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGAT-ELLLLAR-RTDLRRISLDTPDFTD  340 (619)
T ss_dssp             CCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCS-EEEEEEE-SSCEEEEESSSTTCCC
T ss_pred             EccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCc-eEEEEEc-ccceEEEecCCCccce
Confidence                               0  111         1112221       0111112 2333333 356777777654211 


Q ss_pred             EEEe-CCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCeEEEEEec-CCCEEEEEEccCCCEEEEE-EcCCcEEEEE
Q 008467          486 YSLN-GHREPVYSLAFSPTGEYLASG-SLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAAC-FANHTVCVLD  561 (564)
Q Consensus       486 ~~~~-~h~~~i~~~~~spdg~~lasg-s~dg~i~iw~~~~~~~~~~~~~-~~~i~~~~w~~~g~~la~~-~~~~~v~v~~  561 (564)
                      ..+. ..-..+..|+|.+.+..|..+ ...+.|+.++............ -..+..++++..+..|..+ ...+.|.+.+
T Consensus       341 ~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~  420 (619)
T 3s94_A          341 IVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTR  420 (619)
T ss_dssp             EECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             eEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEe
Confidence            1111 112356889999865555544 4578899998875443333322 2356788888765555444 4566777766


Q ss_pred             e
Q 008467          562 F  562 (564)
Q Consensus       562 ~  562 (564)
                      +
T Consensus       421 ~  421 (619)
T 3s94_A          421 L  421 (619)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.09  E-value=0.0048  Score=60.16  Aligned_cols=214  Identities=9%  Similarity=-0.013  Sum_probs=126.2

Q ss_pred             CCcEEEEECCCcceeEEEeecccCeEEEEc--CCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCC-CE
Q 008467          337 DKTAIVWDVKTEEWKQQFEFHSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SL  413 (564)
Q Consensus       337 D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~-~~  413 (564)
                      ...|+..++.......... .......++|  ..+..|.+-...+.|+.++.........+.........+++++.+ .+
T Consensus        52 ~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~l  130 (349)
T 3v64_C           52 RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKL  130 (349)
T ss_dssp             BSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEE
T ss_pred             ccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeE
Confidence            3457777776554433222 2223445555  455667777778888888887655433333333445688898754 55


Q ss_pred             EEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC-CeEEEEeCCCCeEEEEE-eCC
Q 008467          414 LASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-STVKLWDVELGKLLYSL-NGH  491 (564)
Q Consensus       414 las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~-~~h  491 (564)
                      +++-...+.|.+.++........+.........+++.|.+.        .+..+-... +.|..+++.. .....+ ...
T Consensus       131 y~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g--------~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~  201 (349)
T 3v64_C          131 YWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEG--------TIYWTDWGNTPRIEASSMDG-SGRRIIADTH  201 (349)
T ss_dssp             EEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTT--------EEEEEECSSSCEEEEEETTS-CSCEESCCSS
T ss_pred             EEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcC--------eEEEeccCCCCEEEEEeCCC-CCcEEEEECC
Confidence            56666678899999876543322322334457888887543        244454444 7888888763 322222 222


Q ss_pred             CCCEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCeEEEEEec-CCCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467          492 REPVYSLAFSPTGEYLASG-SLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVLD  561 (564)
Q Consensus       492 ~~~i~~~~~spdg~~lasg-s~dg~i~iw~~~~~~~~~~~~~-~~~i~~~~w~~~g~~la~~~~~~~v~v~~  561 (564)
                      ....+.|+|+|++..|..+ +..+.|..+++........... ......++. .++....+-..++.|..+|
T Consensus       202 ~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~  272 (349)
T 3v64_C          202 LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSAN  272 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred             CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEE
Confidence            3456899999877666554 4567899999864432222222 234677777 3444555555666776665

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.06  E-value=0.0031  Score=62.50  Aligned_cols=221  Identities=10%  Similarity=0.002  Sum_probs=130.4

Q ss_pred             EEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEc--CCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEE
Q 008467          330 YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKW  407 (564)
Q Consensus       330 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~  407 (564)
                      +|+.+ ....|+..++.......... .......+.|  ..+..|.+-...+.|+.++.........+.........+++
T Consensus        89 ~l~~~-~~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glav  166 (386)
T 3v65_B           89 VLLFA-NRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAV  166 (386)
T ss_dssp             EEEEE-CBSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEE
T ss_pred             eeEee-cCccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEE
Confidence            44433 33568888887665443332 2223445555  45566777777888998888765543333333334567888


Q ss_pred             CCCC-CEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC-CeEEEEeCCCCeEE
Q 008467          408 DPTG-SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-STVKLWDVELGKLL  485 (564)
Q Consensus       408 ~~~~-~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d-g~i~iwd~~~~~~~  485 (564)
                      ++.+ .++++-...+.|.+.++........+.........+++.|.+.        .+..+-... +.|..+++......
T Consensus       167 d~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g--------~ly~td~~~~~~I~r~~~dG~~~~  238 (386)
T 3v65_B          167 DWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEG--------TIYWTDWGNTPRIEASSMDGSGRR  238 (386)
T ss_dssp             ETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTT--------EEEEEECSSSCEEEEEETTSCSCE
T ss_pred             EeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCC--------eEEEeccCCCCEEEEEeCCCCCcE
Confidence            8754 4556666677888888765443322322334457788877543        244444444 77888887633222


Q ss_pred             EEEeCCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCeEEEEEe-cCCCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467          486 YSLNGHREPVYSLAFSPTGEYLASG-SLDKSMHIWSLKEGKIVKTYT-GNGGIFEVCWNKEGDKIAACFANHTVCVLD  561 (564)
Q Consensus       486 ~~~~~h~~~i~~~~~spdg~~lasg-s~dg~i~iw~~~~~~~~~~~~-~~~~i~~~~w~~~g~~la~~~~~~~v~v~~  561 (564)
                      ..........+.|+|+|++..|..+ +..+.|..+++.......... +......++. ..+..+.+-..++.|..+|
T Consensus       239 ~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~  315 (386)
T 3v65_B          239 IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSAN  315 (386)
T ss_dssp             EEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred             EEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEE
Confidence            2222233456899999877666554 456789999986443322222 2334677888 4455555556677777766

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.00  E-value=0.013  Score=58.33  Aligned_cols=221  Identities=10%  Similarity=0.019  Sum_probs=128.9

Q ss_pred             EEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEc--CCCceEEEEeCCCeEEEEEcCCC----ceeeEecCCCcceE
Q 008467          330 YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGEN----RPIKTFAGHQGEVN  403 (564)
Q Consensus       330 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~i~~~~~~~~----~~~~~~~~h~~~i~  403 (564)
                      +|+.+ ....|+..++.......... ....+..++|  ..+..|.+-...+.|+.+++...    .....+........
T Consensus        85 ~ll~~-~~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~  162 (400)
T 3p5b_L           85 YLFFT-NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  162 (400)
T ss_dssp             EEEEE-ETTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred             eeEEe-ccceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence            34433 34678888887665444332 2233445555  45667777777888888887652    22233333344677


Q ss_pred             EEEECC-CCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEE-eCCCeEEEEeCCC
Q 008467          404 CVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASA-SFDSTVKLWDVEL  481 (564)
Q Consensus       404 ~v~~~~-~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~-s~dg~i~iwd~~~  481 (564)
                      .+++++ .++++++-...+.|.+.++........+.........|+..|.+.        .++.+- +..+.|...++..
T Consensus       163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g--------~ly~td~~~~~~I~~~~~dG  234 (400)
T 3p5b_L          163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHG--------FMYWTDWGTPAKIKKGGLNG  234 (400)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTT--------EEEEEECSSSCCEEEEETTS
T ss_pred             cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccC--------eEEEEeCCCCCEEEEEeCCC
Confidence            899987 455566666788999999876544333333334467888887542        233333 2246788888763


Q ss_pred             CeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEEEEEec---CCCEEEEEEccCCCEEEEEEcCCcE
Q 008467          482 GKLLYSLNGHREPVYSLAFSPTGEYLASGS-LDKSMHIWSLKEGKIVKTYTG---NGGIFEVCWNKEGDKIAACFANHTV  557 (564)
Q Consensus       482 ~~~~~~~~~h~~~i~~~~~spdg~~lasgs-~dg~i~iw~~~~~~~~~~~~~---~~~i~~~~w~~~g~~la~~~~~~~v  557 (564)
                      ......+...-...+.|+++|++..|..+. ..+.|..+++...........   -.....|+.. .+..+.+-..++.|
T Consensus       235 ~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V  313 (400)
T 3p5b_L          235 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAI  313 (400)
T ss_dssp             CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSE
T ss_pred             CccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeE
Confidence            322222233334578999999887776654 467899999865433222222   1235677762 33444455566677


Q ss_pred             EEEE
Q 008467          558 CVLD  561 (564)
Q Consensus       558 ~v~~  561 (564)
                      ..+|
T Consensus       314 ~~~~  317 (400)
T 3p5b_L          314 FSAN  317 (400)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6665

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.99  E-value=0.0083  Score=64.93  Aligned_cols=226  Identities=12%  Similarity=0.075  Sum_probs=136.4

Q ss_pred             CCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEE-EeeCCCcEEEEECCCc----ceeEEEe--ecccCeEEEEcCC
Q 008467          296 DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTE----EWKQQFE--FHSGPTLDVDWRN  368 (564)
Q Consensus       296 dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~----~~~~~~~--~~~~~~~~~~~~~  368 (564)
                      ...|+..+..+.....+......+.+|+|++.+..|+ +-...+.|+.+++...    .....+.  .....-+.++|..
T Consensus       403 ~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~  482 (791)
T 3m0c_C          403 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH  482 (791)
T ss_dssp             BSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred             ccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecC
Confidence            3567777776544444444456678999998665554 5455678888888653    2222222  2233467889999


Q ss_pred             CceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEe-CC-CcEEEEeCCCCeeeeecccccccEEE
Q 008467          369 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS-DD-VTAKIWNMKQDKYVHDLREHSKEIYT  446 (564)
Q Consensus       369 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s-~d-g~i~iwd~~~~~~~~~~~~~~~~i~~  446 (564)
                      ...|++-...+.|.+.++........+...-.....|+++|.+..|+... .. +.|...++........+...-.....
T Consensus       483 ~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~G  562 (791)
T 3m0c_C          483 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNG  562 (791)
T ss_dssp             TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEE
T ss_pred             CcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceE
Confidence            88899988899999999876554333334445688999999765555443 23 67888888755443333333345677


Q ss_pred             EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeC--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 008467          447 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG--HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG  524 (564)
Q Consensus       447 i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~  524 (564)
                      |++.+...        .+..+-...+.|...++........+..  .......|++..+ .++++-...+.|...+..+|
T Consensus       563 LavD~~~~--------~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~-~lYwtD~~~~~I~~~dk~tG  633 (791)
T 3m0c_C          563 ITLDLLSG--------RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTG  633 (791)
T ss_dssp             EEEETTTT--------EEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-EEEEEETTTTEEEEEETTTC
T ss_pred             EEEecCCC--------eEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC-EEEEEECCCCEEEEEeCCCC
Confidence            88876543        2334445567899998864332222222  2223456776432 33444445678888887777


Q ss_pred             eEEEEE
Q 008467          525 KIVKTY  530 (564)
Q Consensus       525 ~~~~~~  530 (564)
                      +.+..+
T Consensus       634 ~~~~~l  639 (791)
T 3m0c_C          634 SDVNLL  639 (791)
T ss_dssp             CCCEEE
T ss_pred             cceEEe
Confidence            654444

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.93  E-value=0.011  Score=59.99  Aligned_cols=240  Identities=13%  Similarity=0.150  Sum_probs=139.5

Q ss_pred             CeEEEEECCC--CCEEEEEeCCCeEEEEECCCceeEeecCC----CCCEEEEEe-------CCCCCEEEEeeCCC-c---
Q 008467          277 DVTTLDWNGE--GTLLATGSYDGQARIWSTNGDLKCTLSKH----KGPIFSLKW-------NKKGDYLLTGSCDK-T---  339 (564)
Q Consensus       277 ~V~~l~~s~~--g~~l~sg~~dg~i~vw~~~~~~~~~~~~h----~~~V~~l~~-------~~~~~~l~s~s~D~-~---  339 (564)
                      ....|+|+|.  ++++++-...+.|++.|..+..+..+..-    ......|+|       +++|.+|+.+...+ .   
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            4678999983  45555555457788888877655544322    224789999       99999777665543 2   


Q ss_pred             ---EEEEECCC-cceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECC-CCCEE
Q 008467          340 ---AIVWDVKT-EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLL  414 (564)
Q Consensus       340 ---v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~-~~~~l  414 (564)
                         |.+.+... +.+..              ..+         +          ..+..+.    ....++++| ++.++
T Consensus       220 ~~~V~~i~r~~~G~~~~--------------~~~---------~----------~~v~~~~----~p~giavdp~~g~LY  262 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDD--------------RSD---------I----------QLIAAYK----QCNGATIHPINGELY  262 (496)
T ss_dssp             EEEEEEEECCTTSCCST--------------TSC---------E----------EEEEEES----CCCCEEECTTTCCEE
T ss_pred             CceEEEEecCCCCceee--------------ccc---------c----------eeeccCC----CceEEEEcCCCCeEE
Confidence               33443221 11100              000         0          0011111    234677899 45666


Q ss_pred             EEEeCCCcEEEEeCC-------CCee-----------eeec-c-cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeE
Q 008467          415 ASCSDDVTAKIWNMK-------QDKY-----------VHDL-R-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTV  474 (564)
Q Consensus       415 as~s~dg~i~iwd~~-------~~~~-----------~~~~-~-~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i  474 (564)
                      ++-..++.|..+|+.       ++..           ...+ . .....-+.++|+|++.        .+.++-+....|
T Consensus       263 vtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~--------~lYvaD~~~h~I  334 (496)
T 3kya_A          263 FNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGK--------YAYFGVINNHYF  334 (496)
T ss_dssp             EEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSS--------EEEEEETTTTEE
T ss_pred             EEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCC--------EEEEEeCCCCEE
Confidence            677778889999986       4432           1111 1 1123357899999874        234455667788


Q ss_pred             EEEeC--CCCeE--EEEEeCC------C---------CCEE-EEEEc-------CCCCEEEEEeCCCcEEEEeCCCCeEE
Q 008467          475 KLWDV--ELGKL--LYSLNGH------R---------EPVY-SLAFS-------PTGEYLASGSLDKSMHIWSLKEGKIV  527 (564)
Q Consensus       475 ~iwd~--~~~~~--~~~~~~h------~---------~~i~-~~~~s-------pdg~~lasgs~dg~i~iw~~~~~~~~  527 (564)
                      +.++.  ..+..  ...+-+.      .         .... .++..       ++|.++++=....+|+.++ .+|. +
T Consensus       335 ~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v  412 (496)
T 3kya_A          335 MRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-V  412 (496)
T ss_dssp             EEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-E
T ss_pred             EEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-E
Confidence            88654  33332  0122111      0         1234 45554       5677777777788999998 5664 4


Q ss_pred             EEEecC-------------------------CCEEEEEEccC-CCEEEEEEcCCcEEEEEee
Q 008467          528 KTYTGN-------------------------GGIFEVCWNKE-GDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       528 ~~~~~~-------------------------~~i~~~~w~~~-g~~la~~~~~~~v~v~~~~  563 (564)
                      .++.+.                         .....|+++++ |+..++=..+.+|+.+++.
T Consensus       413 ~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~  474 (496)
T 3kya_A          413 STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISME  474 (496)
T ss_dssp             EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECC
Confidence            444332                         12568999997 7777777788899988764

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.87  E-value=0.0083  Score=57.43  Aligned_cols=192  Identities=17%  Similarity=0.258  Sum_probs=120.0

Q ss_pred             CCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCc---------eEEEEeC--CCeEEEEEcC-CCceeeE
Q 008467          327 KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV---------SFATSST--DNMIYVCKIG-ENRPIKT  394 (564)
Q Consensus       327 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~--d~~i~~~~~~-~~~~~~~  394 (564)
                      ....++.....+-+.+||+ .++.++.+..  +....++.+++.         .+++.-.  +++|.++++. ...++..
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~  115 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence            4456777777888999999 7777776643  334444433322         2445555  6899999885 2234444


Q ss_pred             ecC------CC-cceEEEEE--CCC-CC-EEEEEeCCCcEEEEeCC-------CCeeeeecccccccEEEEEEccCCCCC
Q 008467          395 FAG------HQ-GEVNCVKW--DPT-GS-LLASCSDDVTAKIWNMK-------QDKYVHDLREHSKEIYTIRWSPTGSGT  456 (564)
Q Consensus       395 ~~~------h~-~~i~~v~~--~~~-~~-~las~s~dg~i~iwd~~-------~~~~~~~~~~~~~~i~~i~~~p~~~~~  456 (564)
                      +..      .. ..+..+++  +|. ++ +++....+|.+..|++.       +.+.+++|... ..+-.+...+...  
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g--  192 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYG--  192 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTT--
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCC--
Confidence            421      11 34555666  774 44 57778888999999872       33455666543 3455555555432  


Q ss_pred             CCCCCcEEEEEEeCCCeEEEEeCC-----CCeEEEEEe-CC-CCCEEEEEE--cCCCC-EEEEEe-CCCcEEEEeCC-CC
Q 008467          457 NNPNQQLILASASFDSTVKLWDVE-----LGKLLYSLN-GH-REPVYSLAF--SPTGE-YLASGS-LDKSMHIWSLK-EG  524 (564)
Q Consensus       457 ~~~~~~~~l~s~s~dg~i~iwd~~-----~~~~~~~~~-~h-~~~i~~~~~--spdg~-~lasgs-~dg~i~iw~~~-~~  524 (564)
                             .|..+-.+.-|..++.+     +++.+..+. ++ ...+..|++  .++|+ ||++.+ .+.++.+|+.. +.
T Consensus       193 -------~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~  265 (355)
T 3amr_A          193 -------RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKN  265 (355)
T ss_dssp             -------EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTC
T ss_pred             -------eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCC
Confidence                   56778888666666654     345665542 22 236788877  56666 555555 67899999997 77


Q ss_pred             eEEEEEe
Q 008467          525 KIVKTYT  531 (564)
Q Consensus       525 ~~~~~~~  531 (564)
                      +.+..|.
T Consensus       266 ~~vg~f~  272 (355)
T 3amr_A          266 KYVADFR  272 (355)
T ss_dssp             CEEEEEE
T ss_pred             cEEEEEE
Confidence            8888885

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.84  E-value=0.0054  Score=59.85  Aligned_cols=59  Identities=24%  Similarity=0.307  Sum_probs=39.0

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe----E--EEEE-ecCCCEEEEEEccCCCEEEEEEc
Q 008467          494 PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK----I--VKTY-TGNGGIFEVCWNKEGDKIAACFA  553 (564)
Q Consensus       494 ~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~----~--~~~~-~~~~~i~~~~w~~~g~~la~~~~  553 (564)
                      ....++| .+|.++++.-..+.|...++....    .  ...+ .....+.++++.|||...++...
T Consensus       269 ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~~  334 (352)
T 2ism_A          269 PPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTSN  334 (352)
T ss_dssp             CEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEECS
T ss_pred             CCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEeC
Confidence            4567788 567777766666778777765432    1  1222 33457899999999987777643

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.84  E-value=0.0041  Score=59.52  Aligned_cols=182  Identities=14%  Similarity=0.253  Sum_probs=118.7

Q ss_pred             eEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC----CC---E-EEEEeC--CCcEEEEeCC-CCeeeeeccc
Q 008467          371 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT----GS---L-LASCSD--DVTAKIWNMK-QDKYVHDLRE  439 (564)
Q Consensus       371 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~----~~---~-las~s~--dg~i~iwd~~-~~~~~~~~~~  439 (564)
                      .++.....+.++++++ .++.+..+..  +.++.+..-|.    |+   + +++...  +++|++|++. ....+..+..
T Consensus        42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~  118 (355)
T 3amr_A           42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD  118 (355)
T ss_dssp             EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred             EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence            3566667788999999 7777777653  56777766653    22   2 344444  6899999763 2223444421


Q ss_pred             ------cc-ccEEEEEE--ccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC-------CCeEEEEEeCCCCCEEEEEEcCC
Q 008467          440 ------HS-KEIYTIRW--SPTGSGTNNPNQQLILASASFDSTVKLWDVE-------LGKLLYSLNGHREPVYSLAFSPT  503 (564)
Q Consensus       440 ------~~-~~i~~i~~--~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~-------~~~~~~~~~~h~~~i~~~~~spd  503 (564)
                            .. ..++.++.  +|..       ...+++....+|.+..|++.       +.+.+.++.- ...+..++..+.
T Consensus       119 ~~~pv~t~~~~pyGlcly~~~~~-------g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~  190 (355)
T 3amr_A          119 PDHPIATAINEVYGFTLYHSQKT-------GKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDE  190 (355)
T ss_dssp             TTSCEECCCSSCCCEEEEECTTT-------CCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETT
T ss_pred             cccCcCCCCCCeeEEEEEecCCC-------CcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCC
Confidence                  11 44566666  4432       23467778888999999882       3355667664 356888999999


Q ss_pred             CCEEEEEeCCCcEEEEeCC-----CCeEEEEEecC---CCEEEEEE--ccCCC-EEEEEE-cCCcEEEEEee
Q 008467          504 GEYLASGSLDKSMHIWSLK-----EGKIVKTYTGN---GGIFEVCW--NKEGD-KIAACF-ANHTVCVLDFR  563 (564)
Q Consensus       504 g~~lasgs~dg~i~iw~~~-----~~~~~~~~~~~---~~i~~~~w--~~~g~-~la~~~-~~~~v~v~~~~  563 (564)
                      ...|..+-.+.-|..++.+     +++++..+...   ..+-.|+.  .++|+ +|.+++ .+.+..|||.+
T Consensus       191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            9999999998767666754     35566555332   35677777  56666 555555 57789999863

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.81  E-value=0.02  Score=54.85  Aligned_cols=214  Identities=8%  Similarity=0.012  Sum_probs=122.0

Q ss_pred             CCcEEEEECCCcc--eeEEEeecccCeEEEEcC--CCceEEEEeCCCeEEEEEcCCCce-eeEecCCCcceEEEEECCC-
Q 008467          337 DKTAIVWDVKTEE--WKQQFEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRP-IKTFAGHQGEVNCVKWDPT-  410 (564)
Q Consensus       337 D~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~-~~~~~~h~~~i~~v~~~~~-  410 (564)
                      ...|+..|+....  ....+. .......++|.  .+..|.+-...+.|+.++...... ...+...-.....+++++. 
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~   90 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG   90 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT
T ss_pred             cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC
Confidence            4678888887653  111111 12234455564  566777777788898888765532 1222222234667888874 


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEE-eCCCeEEEEeCCCCeEEEEE-
Q 008467          411 GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASA-SFDSTVKLWDVELGKLLYSL-  488 (564)
Q Consensus       411 ~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~-  488 (564)
                      +.++++-...+.|.++++........+.........++..|.+.        .+..+- +..+.|...++. |.....+ 
T Consensus        91 g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g--------~ly~td~~~~~~I~r~~~d-G~~~~~~~  161 (318)
T 3sov_A           91 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSG--------FMYWTDWGEVPKIERAGMD-GSSRFIII  161 (318)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGT--------EEEEEECSSSCEEEEEETT-SCSCEEEE
T ss_pred             CeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCC--------EEEEEecCCCCEEEEEEcC-CCCeEEEE
Confidence            45556666678999999875433222223334457788877532        233332 235778888876 3222222 


Q ss_pred             eCCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCeEEEEEe-cCCCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467          489 NGHREPVYSLAFSPTGEYLASG-SLDKSMHIWSLKEGKIVKTYT-GNGGIFEVCWNKEGDKIAACFANHTVCVLD  561 (564)
Q Consensus       489 ~~h~~~i~~~~~spdg~~lasg-s~dg~i~iw~~~~~~~~~~~~-~~~~i~~~~w~~~g~~la~~~~~~~v~v~~  561 (564)
                      ...-...+.|+|+|++..|..+ +..+.|..+++.......... .......++... +..+.+-..++.|..+|
T Consensus       162 ~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~  235 (318)
T 3sov_A          162 NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACN  235 (318)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred             ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEE
Confidence            2223346899999977666555 456789999986433222222 223466777753 33444445566666665

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.78  E-value=0.0018  Score=61.37  Aligned_cols=157  Identities=13%  Similarity=0.131  Sum_probs=105.9

Q ss_pred             CCCcceEEEEECCCCCEEEEEe-CCCcEEEEeCCCCeeeeecccc-------cccEEEEEE---ccCCCCCCCCCCcEEE
Q 008467          397 GHQGEVNCVKWDPTGSLLASCS-DDVTAKIWNMKQDKYVHDLREH-------SKEIYTIRW---SPTGSGTNNPNQQLIL  465 (564)
Q Consensus       397 ~h~~~i~~v~~~~~~~~las~s-~dg~i~iwd~~~~~~~~~~~~~-------~~~i~~i~~---~p~~~~~~~~~~~~~l  465 (564)
                      +....-.+++|++....|..++ ..++|..|+...+.........       ...+..|.|   .|.+.         ++
T Consensus        10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~gr---------L~   80 (334)
T 2p9w_A           10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKR---------LF   80 (334)
T ss_dssp             CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCE---------EE
T ss_pred             CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCc---------EE
Confidence            3344456899988555555555 6999999998755433222111       113578888   46543         44


Q ss_pred             EEEe-------------CCCeEEEEeCC---CCeEEEEEe--CC-----------CCCEEEEEEcCCCCEEEEEeCC-Cc
Q 008467          466 ASAS-------------FDSTVKLWDVE---LGKLLYSLN--GH-----------REPVYSLAFSPTGEYLASGSLD-KS  515 (564)
Q Consensus       466 ~s~s-------------~dg~i~iwd~~---~~~~~~~~~--~h-----------~~~i~~~~~spdg~~lasgs~d-g~  515 (564)
                      ++..             .+..|..+|+.   +++.++...  ..           ......++..++|+..++++.- +.
T Consensus        81 vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~  160 (334)
T 2p9w_A           81 AVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPA  160 (334)
T ss_dssp             EEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCE
T ss_pred             EEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCe
Confidence            4333             26789999998   787766554  11           1247899999999999999988 88


Q ss_pred             EEEEeCCCCeEEEEEe-c------CCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          516 MHIWSLKEGKIVKTYT-G------NGGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       516 i~iw~~~~~~~~~~~~-~------~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      |...+... +.+..+. .      ..+.+.++++|+|+.|++....+.+..+|++
T Consensus       161 I~rV~pdG-~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          161 IARVSADG-KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             EEEECTTS-CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred             EEEEeCCC-CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence            77777653 3333331 1      1236689999999999988779999988864

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.73  E-value=0.014  Score=53.69  Aligned_cols=190  Identities=11%  Similarity=0.103  Sum_probs=115.9

Q ss_pred             CeEEEEcC--CCceEEEEeCCCeEEEEEcCCCceeeEec-CCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCee---
Q 008467          360 PTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY---  433 (564)
Q Consensus       360 ~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~---  433 (564)
                      .+..+.|.  .+..|++...++.|+..+.. ++.++.+. +-......|++.+++.++++.-.++.+.++++.....   
T Consensus        28 ~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~  106 (255)
T 3qqz_A           28 NISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKI  106 (255)
T ss_dssp             CEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEE
T ss_pred             CcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeee
Confidence            34555554  34566777778889999987 66665553 2225677889999988777665677888888765432   


Q ss_pred             eeecc------cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCC-eEEEEeC-CCCeEEEEEe-------CCCCCEEEE
Q 008467          434 VHDLR------EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS-TVKLWDV-ELGKLLYSLN-------GHREPVYSL  498 (564)
Q Consensus       434 ~~~~~------~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg-~i~iwd~-~~~~~~~~~~-------~h~~~i~~~  498 (564)
                      +....      ......-.++|.|.+.        .++++.-.+. .|..|+- .....+..+.       .+...+.++
T Consensus       107 ~~~~~~~~~~~~~N~g~EGLA~d~~~~--------~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l  178 (255)
T 3qqz_A          107 LKKIKIPLQESPTNCGFEGLAYSRQDH--------TFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA  178 (255)
T ss_dssp             EEEEECCCSSCCCSSCCEEEEEETTTT--------EEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred             eeeeccccccccccCCcceEEEeCCCC--------EEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence            12111      1234457889988753        2333333333 4555551 1111111121       122346889


Q ss_pred             EEcCC-CCEEEEEeCCCcEEEEeCCCCeEEEEEecC----------CCEEEEEEccCCCEEEEEEcCCcEEEE
Q 008467          499 AFSPT-GEYLASGSLDKSMHIWSLKEGKIVKTYTGN----------GGIFEVCWNKEGDKIAACFANHTVCVL  560 (564)
Q Consensus       499 ~~spd-g~~lasgs~dg~i~iw~~~~~~~~~~~~~~----------~~i~~~~w~~~g~~la~~~~~~~v~v~  560 (564)
                      +|+|. |.+++.....+.|.++|.. |+++..+.-.          ...-.|+++++|+..+++-.| .+.+|
T Consensus       179 ~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n-~~y~f  249 (255)
T 3qqz_A          179 EFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPN-RFYRF  249 (255)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTT-EEEEE
T ss_pred             EEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCc-eEEEE
Confidence            99996 4566666777889999965 6666665432          245789999999977776444 44443

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.71  E-value=0.00027  Score=75.88  Aligned_cols=226  Identities=11%  Similarity=0.071  Sum_probs=129.6

Q ss_pred             CCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEee-CCCcEEEEECCC----cceeEEEe--ecccCeEEEEcCC
Q 008467          296 DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDVKT----EEWKQQFE--FHSGPTLDVDWRN  368 (564)
Q Consensus       296 dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~D~~v~iwd~~~----~~~~~~~~--~~~~~~~~~~~~~  368 (564)
                      .+.|+..+..+.....+......+.+|+|++.+..|+.+. ..+.|..+++.+    ......+.  .....-+.++|..
T Consensus       385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~  464 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH  464 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSS
T ss_pred             ccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeC
Confidence            3567777766544333333334556889998777766554 457899999875    22111111  1122345677777


Q ss_pred             CceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEe-CC-CcEEEEeCCCCeeeeecccccccEEE
Q 008467          369 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS-DD-VTAKIWNMKQDKYVHDLREHSKEIYT  446 (564)
Q Consensus       369 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s-~d-g~i~iwd~~~~~~~~~~~~~~~~i~~  446 (564)
                      ...|++-...+.|.+++.........+.........++++|.+..|+... .. +.|..+++........+...-.....
T Consensus       465 g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnG  544 (699)
T 1n7d_A          465 SNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNG  544 (699)
T ss_dssp             SBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCC
T ss_pred             CcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccE
Confidence            77787777788898888765543333332234567889998655444433 22 67777776543221111111223356


Q ss_pred             EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEe---CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 008467          447 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN---GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE  523 (564)
Q Consensus       447 i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~  523 (564)
                      |+|+|.+.        .+.++-+..+.|..+++.... ...+.   ........|++..+ .++++....+.|..++..+
T Consensus       545 lavd~~~~--------~LY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~  614 (699)
T 1n7d_A          545 ITLDLLSG--------RLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLT  614 (699)
T ss_dssp             EEECTTTC--------CEEEEETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTT
T ss_pred             EEEeccCC--------EEEEEecCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccC
Confidence            78877643        244555667889999986322 22221   11122345666544 4444555678999999888


Q ss_pred             CeEEEEEe
Q 008467          524 GKIVKTYT  531 (564)
Q Consensus       524 ~~~~~~~~  531 (564)
                      |+.+..+.
T Consensus       615 G~~~~~i~  622 (699)
T 1n7d_A          615 GSDVNLLA  622 (699)
T ss_dssp             EEEEECCC
T ss_pred             CCceEEee
Confidence            88776654

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.70  E-value=0.0053  Score=61.75  Aligned_cols=98  Identities=18%  Similarity=0.181  Sum_probs=62.4

Q ss_pred             EEEEEeCCCeEEEEeCCCCeEEEEE-e-CCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEeCC--CCeE--EEEEecC---
Q 008467          464 ILASASFDSTVKLWDVELGKLLYSL-N-GHREPVYSLAFSPTGEYLA-SGSLDKSMHIWSLK--EGKI--VKTYTGN---  533 (564)
Q Consensus       464 ~l~s~s~dg~i~iwd~~~~~~~~~~-~-~h~~~i~~~~~spdg~~la-sgs~dg~i~iw~~~--~~~~--~~~~~~~---  533 (564)
                      +.++-..++.|+.+|..++.....+ . +....-..|+|+|+|++|. +-...+.|..++..  ++.+  ...+.+.   
T Consensus       242 lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~  321 (433)
T 4hw6_A          242 IYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSS  321 (433)
T ss_dssp             EEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTC
T ss_pred             EEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCC
Confidence            4444456788999998877652222 1 1122235799999999554 44556889998765  3432  1222221   


Q ss_pred             -------------CCEEEEEE---------ccCCCEEEEEEcCCcEEEEE
Q 008467          534 -------------GGIFEVCW---------NKEGDKIAACFANHTVCVLD  561 (564)
Q Consensus       534 -------------~~i~~~~w---------~~~g~~la~~~~~~~v~v~~  561 (564)
                                   .....+++         +++|+..++-..++.|.+++
T Consensus       322 ~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~  371 (433)
T 4hw6_A          322 PGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT  371 (433)
T ss_dssp             CCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC
T ss_pred             CccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC
Confidence                         12567999         78888877777788888775

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.64  E-value=0.093  Score=55.34  Aligned_cols=221  Identities=10%  Similarity=0.008  Sum_probs=136.9

Q ss_pred             CCCeEEEEECCCcee-Eeec-CCCCCEEEEEeCCCCCEEE-EeeCCCcEEEEECCCcceeEEEee--cccCeEEEEcCCC
Q 008467          295 YDGQARIWSTNGDLK-CTLS-KHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEF--HSGPTLDVDWRNN  369 (564)
Q Consensus       295 ~dg~i~vw~~~~~~~-~~~~-~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~  369 (564)
                      ....|+..+.++... ..+. ..-..+.+|+|++.+..|+ +-..++.|..+++........+..  ....-+.++|...
T Consensus        13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~   92 (628)
T 4a0p_A           13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGK   92 (628)
T ss_dssp             ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT
T ss_pred             eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCC
Confidence            456788888765422 2221 1234678999999776665 445678899999876544333322  2334578899988


Q ss_pred             ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEe--CCCcEEEEeCCCCeeeeecccccccEEEE
Q 008467          370 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS--DDVTAKIWNMKQDKYVHDLREHSKEIYTI  447 (564)
Q Consensus       370 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s--~dg~i~iwd~~~~~~~~~~~~~~~~i~~i  447 (564)
                      ..+.+-...+.|.+.+.........+...-.....++++|....|....  ..+.|...++........+ ........|
T Consensus        93 ~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~-~~~~~P~Gl  171 (628)
T 4a0p_A           93 NLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV-PNVGRANGL  171 (628)
T ss_dssp             EEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-CSCSSEEEE
T ss_pred             EEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE-CCCCCcceE
Confidence            8888888889999999876543323333345578999998655554443  2567777777654432222 233445778


Q ss_pred             EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE
Q 008467          448 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI  526 (564)
Q Consensus       448 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~  526 (564)
                      ++.+.+.        .+..+-...+.|...|+..... ..+.........|++.. +..+.+-...+.|...|..+|+.
T Consensus       172 alD~~~~--------~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~  240 (628)
T 4a0p_A          172 TIDYAKR--------RLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQN  240 (628)
T ss_dssp             EEETTTT--------EEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred             EEccccC--------EEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCc
Confidence            8877543        2444455678899999864322 22222233456788765 44445545578899999777653

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.60  E-value=0.066  Score=57.94  Aligned_cols=215  Identities=11%  Similarity=0.018  Sum_probs=124.0

Q ss_pred             CCCcEEEEECCCcceeEEEeecccCe--EEEEcCCCceEEEEeCCCeEEEEEcCCC----ceeeEecCCCcceEEEEECC
Q 008467          336 CDKTAIVWDVKTEEWKQQFEFHSGPT--LDVDWRNNVSFATSSTDNMIYVCKIGEN----RPIKTFAGHQGEVNCVKWDP  409 (564)
Q Consensus       336 ~D~~v~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~i~~~~~~~~----~~~~~~~~h~~~i~~v~~~~  409 (564)
                      ....|+..++........... ...+  +++++..+..|++-...+.|+.+++...    .....+.........|++++
T Consensus       402 n~~~Ir~i~l~~~~~~~l~~~-~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~  480 (791)
T 3m0c_C          402 NRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW  480 (791)
T ss_dssp             CBSSEEEECTTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred             cccceeEeeccCCcceeeecC-CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeee
Confidence            345677777776554433322 2223  3445556777778778888888887642    22233333344567899988


Q ss_pred             CCC-EEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEE-eCCCeEEEEeCCCCeEEEE
Q 008467          410 TGS-LLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASA-SFDSTVKLWDVELGKLLYS  487 (564)
Q Consensus       410 ~~~-~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~  487 (564)
                      .+. ++++-+..+.|.+.++........+.........|++.|...        .++.+- +..+.|...++........
T Consensus       481 ~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g--------~LYwtD~g~~~~I~~~~~dG~~~~~l  552 (791)
T 3m0c_C          481 IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHG--------FMYWTDWGTPAKIKKGGLNGVDIYSL  552 (791)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTT--------EEEEEECSSSCEEEEEETTSCCEEEE
T ss_pred             cCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCC--------CEEEecCCCCCeEEEEecCCCceEEE
Confidence            774 555666688999999876543333333334467888887532        233333 2236788888873333222


Q ss_pred             EeCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEEEEEecC---CCEEEEEEccCCCEEEEE-EcCCcEEEEE
Q 008467          488 LNGHREPVYSLAFSPTGEYLASGS-LDKSMHIWSLKEGKIVKTYTGN---GGIFEVCWNKEGDKIAAC-FANHTVCVLD  561 (564)
Q Consensus       488 ~~~h~~~i~~~~~spdg~~lasgs-~dg~i~iw~~~~~~~~~~~~~~---~~i~~~~w~~~g~~la~~-~~~~~v~v~~  561 (564)
                      +.......+.|++++.+..|..+. ..+.|..+++............   ...+.|+..  +++|..+ ..++.|..+|
T Consensus       553 v~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~d  629 (791)
T 3m0c_C          553 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSAN  629 (791)
T ss_dssp             ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred             EeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEe
Confidence            333335678999998877766654 4568999998654433333321   234566653  3344433 4455665554

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.52  E-value=0.041  Score=53.58  Aligned_cols=60  Identities=12%  Similarity=0.131  Sum_probs=41.8

Q ss_pred             CCEEEEEEc-------CCCCEEEEEeCCCcEEEEeCCCC-eEE--EEEe-c-CCCEEEEEEccCCCEEEEEE
Q 008467          493 EPVYSLAFS-------PTGEYLASGSLDKSMHIWSLKEG-KIV--KTYT-G-NGGIFEVCWNKEGDKIAACF  552 (564)
Q Consensus       493 ~~i~~~~~s-------pdg~~lasgs~dg~i~iw~~~~~-~~~--~~~~-~-~~~i~~~~w~~~g~~la~~~  552 (564)
                      .....++|.       .+|.++++.-..+.|...++... +..  ..+- + ...+.++++.|||...++..
T Consensus       259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            356788883       57777777767788888888753 332  2332 2 35689999999998777764

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.51  E-value=0.0022  Score=64.56  Aligned_cols=152  Identities=11%  Similarity=0.192  Sum_probs=93.7

Q ss_pred             ceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCC----eEE
Q 008467          401 EVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS----TVK  475 (564)
Q Consensus       401 ~i~~v~~~~-~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg----~i~  475 (564)
                      ....++++| ++..|..+...+.|+.+|+.++.... +.........++|++++.        .++++...++    .+.
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~~G~--------~lyvad~~~~~~~~~v~  208 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTHEAD--------SMIITNDQNNNDRPNNY  208 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECTTSS--------EEEEEECCSCTTSEEEE
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeCCCC--------EEEEEeCCCCcccceEE
Confidence            346789998 34445555444889999988765433 323344568899988764        2344443222    233


Q ss_pred             EEeCCCCeEE--EEEeCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEec--CCCEEEEEEccCCCEEEE
Q 008467          476 LWDVELGKLL--YSLNGHREPVYSLAFSP-TGEYLASGSLDKSMHIWSLKEGKIVKTYTG--NGGIFEVCWNKEGDKIAA  550 (564)
Q Consensus       476 iwd~~~~~~~--~~~~~h~~~i~~~~~sp-dg~~lasgs~dg~i~iw~~~~~~~~~~~~~--~~~i~~~~w~~~g~~la~  550 (564)
                      +++.. +...  ..+.. ......++++| +|.++++-..++.|..|+..++........  ......++|+|+|++|.+
T Consensus       209 ~~~~~-g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv  286 (430)
T 3tc9_A          209 ILTRE-SGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYI  286 (430)
T ss_dssp             EEEGG-GTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEE
T ss_pred             EEeCC-Cceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEE
Confidence            34422 2111  12221 22347789999 677777766788999999987765333322  234789999999995554


Q ss_pred             E-EcCCcEEEEEee
Q 008467          551 C-FANHTVCVLDFR  563 (564)
Q Consensus       551 ~-~~~~~v~v~~~~  563 (564)
                      + ..++.|.+++..
T Consensus       287 ~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          287 VVVNQHYILRSDYD  300 (430)
T ss_dssp             EETTTTEEEEEEEE
T ss_pred             EECCCCEEEEEeCC
Confidence            4 567788887753

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.47  E-value=0.12  Score=52.31  Aligned_cols=114  Identities=8%  Similarity=0.068  Sum_probs=64.4

Q ss_pred             ceEEEEECCC--CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEE-------CCCCC
Q 008467          218 EVCACAWSPA--GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW-------NGEGT  288 (564)
Q Consensus       218 ~V~~~~~sp~--~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~-------s~~g~  288 (564)
                      ....++|+|.  ++++++-...+.|++.|+.++..           ..+..   ...........++|       +++|.
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v-----------~~l~~---~~~~~~~~p~~ia~~~~~~~~d~~G~  205 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRML-----------SSPLN---INTIPTNRIRSIAFNKKIEGYADEAE  205 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEE-----------EEEEC---CTTSSCSBEEEEEECCCBTTTBCTTC
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEE-----------EEEEc---cCccccCCCcEEEEeecccccCCCCC
Confidence            3568899993  44555544446677777765421           11111   10112235788999       99999


Q ss_pred             EEEEEeCCC-------eEEEEECCC--cee-----EeecCCCCCEEEEEeCCCC-CEEEEeeCCCcEEEEECC
Q 008467          289 LLATGSYDG-------QARIWSTNG--DLK-----CTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVK  346 (564)
Q Consensus       289 ~l~sg~~dg-------~i~vw~~~~--~~~-----~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~  346 (564)
                      .|+.+...+       .|.+.+...  ...     ..+..... ..+++.+|++ ..+++-..++.|..+|+.
T Consensus       206 ~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~-p~giavdp~~g~LYvtd~~~g~V~r~d~~  277 (496)
T 3kya_A          206 YMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQ-CNGATIHPINGELYFNSYEKGQVFRLDLV  277 (496)
T ss_dssp             EEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESC-CCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred             EEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCC-ceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence            666666554       255554332  321     12222122 2467788854 445556677789999886

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.41  E-value=0.11  Score=50.52  Aligned_cols=65  Identities=15%  Similarity=0.135  Sum_probs=43.7

Q ss_pred             CCEEEEEEcC-------CCCEEEEEeCCCcEEEEeCCCCeEEEEEe---c-CCCEEEEEEccCCCEEEEEE-cCCcE
Q 008467          493 EPVYSLAFSP-------TGEYLASGSLDKSMHIWSLKEGKIVKTYT---G-NGGIFEVCWNKEGDKIAACF-ANHTV  557 (564)
Q Consensus       493 ~~i~~~~~sp-------dg~~lasgs~dg~i~iw~~~~~~~~~~~~---~-~~~i~~~~w~~~g~~la~~~-~~~~v  557 (564)
                      ..+..++|..       +|.++++.-..+.|...++..++.+....   . ...+.++++.|||...++.. .+|.|
T Consensus       271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I  347 (353)
T 2g8s_A          271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGEL  347 (353)
T ss_dssp             CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEE
T ss_pred             cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEE
Confidence            3567788864       47777776677888888887765543321   2 34789999999999666553 34443

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.40  E-value=0.047  Score=57.52  Aligned_cols=223  Identities=9%  Similarity=-0.009  Sum_probs=124.8

Q ss_pred             CCeEEEEECCCce--eEeecCCCCCEEEEEeCCCCCEEEEee-CCCcEEEEECCCcce-eEEEee--cccCeEEEEcCCC
Q 008467          296 DGQARIWSTNGDL--KCTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDVKTEEW-KQQFEF--HSGPTLDVDWRNN  369 (564)
Q Consensus       296 dg~i~vw~~~~~~--~~~~~~h~~~V~~l~~~~~~~~l~s~s-~D~~v~iwd~~~~~~-~~~~~~--~~~~~~~~~~~~~  369 (564)
                      ...|+..+..+..  ...+...-..+.+|+|++.+..|+-+. ..+.|..+++..... ...+..  ....-+.++|...
T Consensus        17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~   96 (619)
T 3s94_A           17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE   96 (619)
T ss_dssp             SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTT
T ss_pred             cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCC
Confidence            4567777766532  222223344578999999777766544 457888888865532 122221  2223577889888


Q ss_pred             ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC--CCcEEEEeCCCCeeeeecccccccEEEE
Q 008467          370 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD--DVTAKIWNMKQDKYVHDLREHSKEIYTI  447 (564)
Q Consensus       370 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~--dg~i~iwd~~~~~~~~~~~~~~~~i~~i  447 (564)
                      ..+++-...+.|.+.+.........+...-.....|+++|.+..|.....  .+.|...++........+...-.....|
T Consensus        97 ~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Gl  176 (619)
T 3s94_A           97 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGL  176 (619)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEE
T ss_pred             EEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEE
Confidence            88888888999999998765433333344455778999987555444432  4566666665433322222223345778


Q ss_pred             EEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 008467          448 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV  527 (564)
Q Consensus       448 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~  527 (564)
                      ++.+.+.        .+..+-...+.|...|+..........+.......|++..+ ..+.+-...+.|...|..+|+..
T Consensus       177 ald~~~~--------~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~  247 (619)
T 3s94_A          177 TLDYEEQ--------KLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGL  247 (619)
T ss_dssp             EEETTTT--------EEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCC
T ss_pred             EEEccCC--------EEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCccc
Confidence            8877542        24444455678888888643322112211122356777655 34444445678999998777543

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.36  E-value=0.33  Score=54.97  Aligned_cols=321  Identities=15%  Similarity=0.159  Sum_probs=163.8

Q ss_pred             ccceEEEEECCC------CCEEEEEEC-CCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467          216 TSEVCACAWSPA------GSLLASGSG-DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  288 (564)
Q Consensus       216 ~~~V~~~~~sp~------~~~lasgs~-D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  288 (564)
                      ..+|.|+++.|.      +.++|.|.. |++++|+.+.+-..           ..........  ....|.-+.+ ....
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~-----------~~~~~L~~~~--~p~si~l~~~-~~~~  618 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFEL-----------LHKEMLGGEI--IPRSILMTTF-ESSH  618 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCE-----------EEEEECCSSC--CEEEEEEEEE-TTEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCe-----------EEEEECCCCC--CCcEEEEEEe-CCCc
Confidence            357999999874      368999996 99999999974221           1111111100  0112333344 2346


Q ss_pred             EEEEEeCCCeEEEEECC---CceeE---eecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeE
Q 008467          289 LLATGSYDGQARIWSTN---GDLKC---TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL  362 (564)
Q Consensus       289 ~l~sg~~dg~i~vw~~~---~~~~~---~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~  362 (564)
                      +|..|-.||.+.-+..+   |.+..   .+-+ ..|+.=..+...|..-+-+..++...++--+ +.+.-. .....++.
T Consensus       619 ~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s-~l~~~~v~  695 (1158)
T 3ei3_A          619 YLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFS-NVNLKEVN  695 (1158)
T ss_dssp             EEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEE-EBSSSCCC
T ss_pred             EEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEe-ccChHHhc
Confidence            78899999988665532   33322   2223 3455444444444443333345555555433 221111 11111121


Q ss_pred             EE-EcCC---CceEEEEeCCCeEEEEEcCCCc--eeeEecCCCcceEEEEECCCCCEEEEEeCC----------------
Q 008467          363 DV-DWRN---NVSFATSSTDNMIYVCKIGENR--PIKTFAGHQGEVNCVKWDPTGSLLASCSDD----------------  420 (564)
Q Consensus       363 ~~-~~~~---~~~~~~~~~d~~i~~~~~~~~~--~~~~~~~h~~~i~~v~~~~~~~~las~s~d----------------  420 (564)
                      .+ .|..   ...++..+ ++.++++.+....  +++.+.- ...+..++++|..+.++.+..+                
T Consensus       696 ~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL-~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  773 (1158)
T 3ei3_A          696 YMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPL-YESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPS  773 (1158)
T ss_dssp             EEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEEC-SSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCC
T ss_pred             eEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeC-CCCceEEEEcCCCCEEEEEEEeccccccccccchhhhh
Confidence            12 2221   23444333 4558888775432  2332221 2356778888777665443211                


Q ss_pred             ---------------------------------CcEEEEeCCCCeeeeeccc-ccccEEEEEEccCCCCCCCCCCcEEEE
Q 008467          421 ---------------------------------VTAKIWNMKQDKYVHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILA  466 (564)
Q Consensus       421 ---------------------------------g~i~iwd~~~~~~~~~~~~-~~~~i~~i~~~p~~~~~~~~~~~~~l~  466 (564)
                                                       +.|++.|..+.+.+..+.- ....+.+++.-.-..     +...+++
T Consensus       774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~-----~~~~~lv  848 (1158)
T 3ei3_A          774 ASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGK-----DPNTYFI  848 (1158)
T ss_dssp             HHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTT-----CCCCEEE
T ss_pred             hhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEcc-----CCCEEEE
Confidence                                             2356667666665544332 122344444322211     1122555


Q ss_pred             EEe----------CCCeEEEEeCCCCeEEEEE-eCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE-EEecCC
Q 008467          467 SAS----------FDSTVKLWDVELGKLLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK-TYTGNG  534 (564)
Q Consensus       467 s~s----------~dg~i~iwd~~~~~~~~~~-~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~-~~~~~~  534 (564)
                      .|.          ..|.|.++++..++..... ....++|++++-- +|++||+.  ...|++|++...+.+. ......
T Consensus       849 VGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~i--g~~l~vy~l~~~~~L~~~~~~~~  925 (1158)
T 3ei3_A          849 VGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLASI--NSTVRLYEWTTEKELRTECNHYN  925 (1158)
T ss_dssp             EEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEEE--TTEEEEEEECTTSCEEEEEEECC
T ss_pred             EEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEEc--CCEEEEEECCCCceEEEEeeccc
Confidence            554          3478999998755432211 2245789988632 45544443  3679999998665443 111111


Q ss_pred             CEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          535 GIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       535 ~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      .+..+.....|+++++|..-..|.++-++
T Consensus       926 ~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~  954 (1158)
T 3ei3_A          926 NIMALYLKTKGDFILVGDLMRSVLLLAYK  954 (1158)
T ss_dssp             CSCEEEEEEETTEEEEEESSBCEEEEEEE
T ss_pred             cEEEEEEeccCCEEEEEEhhheEEEEEEE
Confidence            22233333457888888877777777655

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.29  E-value=0.015  Score=55.09  Aligned_cols=187  Identities=12%  Similarity=0.166  Sum_probs=110.3

Q ss_pred             EEEcCC-CceE-EEEeCCCeEEEEEcCCCceee-EecC----CC--cceEEEEE---CCCCCEEEEEe------------
Q 008467          363 DVDWRN-NVSF-ATSSTDNMIYVCKIGENRPIK-TFAG----HQ--GEVNCVKW---DPTGSLLASCS------------  418 (564)
Q Consensus       363 ~~~~~~-~~~~-~~~~~d~~i~~~~~~~~~~~~-~~~~----h~--~~i~~v~~---~~~~~~las~s------------  418 (564)
                      ++.|.. ...| ++.-..+.|..|+...+.... .+.+    ..  ..+..+.|   .|+++++++..            
T Consensus        17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~   96 (334)
T 2p9w_A           17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSS   96 (334)
T ss_dssp             CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCS
T ss_pred             CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccccc
Confidence            455643 3444 444478999999887543322 2322    11  13578999   68888877543            


Q ss_pred             -CCCcEEEEeCC---CCeeeeec--cccc-----------ccEEEEEEccCCCCCCCCCCcEEEEEEeCC-CeEEEEeCC
Q 008467          419 -DDVTAKIWNMK---QDKYVHDL--REHS-----------KEIYTIRWSPTGSGTNNPNQQLILASASFD-STVKLWDVE  480 (564)
Q Consensus       419 -~dg~i~iwd~~---~~~~~~~~--~~~~-----------~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d-g~i~iwd~~  480 (564)
                       .+..+..+|+.   +++.+...  ....           .....++..++|.         ..++++.- +.|...+..
T Consensus        97 ~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn---------aYVt~s~~~~~I~rV~pd  167 (334)
T 2p9w_A           97 HGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN---------SYVAFALGMPAIARVSAD  167 (334)
T ss_dssp             SSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC---------EEEEEEESSCEEEEECTT
T ss_pred             CCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC---------EEEeCCCCCCeEEEEeCC
Confidence             16779999998   66655332  2211           2367788888775         45567777 777777765


Q ss_pred             CCeEEEEE--e----CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE--EEEEe-cC----CCEEE-EEEccCCC
Q 008467          481 LGKLLYSL--N----GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI--VKTYT-GN----GGIFE-VCWNKEGD  546 (564)
Q Consensus       481 ~~~~~~~~--~----~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~--~~~~~-~~----~~i~~-~~w~~~g~  546 (564)
                       |+.+..+  .    ......+.|+++|+|+.|++....|.|..+|+.+...  +..-. +.    ..... +.-..+|+
T Consensus       168 -G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~  246 (334)
T 2p9w_A          168 -GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNE  246 (334)
T ss_dssp             -SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTE
T ss_pred             -CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCE
Confidence             3322221  1    1122367899999999888887799999999874322  21110 11    12233 34456788


Q ss_pred             EEEEE-EcCCcEEE
Q 008467          547 KIAAC-FANHTVCV  559 (564)
Q Consensus       547 ~la~~-~~~~~v~v  559 (564)
                      .|+++ ..++.+.+
T Consensus       247 vllV~~~~~~~~~l  260 (334)
T 2p9w_A          247 SVLVGARAPYAISF  260 (334)
T ss_dssp             EEEEEEETTEEEEE
T ss_pred             EEEEEcCCCCEEEE
Confidence            74544 44544433

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.13  E-value=0.0019  Score=69.38  Aligned_cols=215  Identities=12%  Similarity=0.041  Sum_probs=112.3

Q ss_pred             CCCcEEEEECCCcceeEEEeecccCeEEEEc--CCCceEEEEeCCCeEEEEEcCC----CceeeEecCCCcceEEEEECC
Q 008467          336 CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGE----NRPIKTFAGHQGEVNCVKWDP  409 (564)
Q Consensus       336 ~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~i~~~~~~~----~~~~~~~~~h~~~i~~v~~~~  409 (564)
                      ..+.|+..++.+......+... ..+..+.|  ..+..|++-...+.|+.+++..    ......+.........|++++
T Consensus       384 ~~~~I~~id~~~~~~~~~~~~~-~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~  462 (699)
T 1n7d_A          384 NRHEVRKMTLDRSEYTSLIPNL-RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW  462 (699)
T ss_dssp             CTTC-CEECTTSCCEECCSCCC-TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCC
T ss_pred             CccceEEEeCCCCcceeeeccC-cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEe
Confidence            3457778887766544332221 12233344  4555666666677888888764    222222211122345678875


Q ss_pred             C-CCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeC-CCeEEEEeCCCCeEEEE
Q 008467          410 T-GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF-DSTVKLWDVELGKLLYS  487 (564)
Q Consensus       410 ~-~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~  487 (564)
                      . ++++++-...+.|.++++........+.........|++.|.+.        .++.+-.. .+.|..+++. |.....
T Consensus       463 ~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g--------~ly~td~~~~~~I~~~~~d-G~~~~~  533 (699)
T 1n7d_A          463 IHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHG--------FMYWTDWGTPAKIKKGGLN-GVDIYS  533 (699)
T ss_dssp             SSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSS--------CCEECCCSSSCCEEBCCSS-SCCCCE
T ss_pred             eCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCC--------cEEEcccCCCCeEEEEeCC-CCCeeE
Confidence            4 45556656678899999876543332222222334566665432        12233222 2677777665 222222


Q ss_pred             E-eCCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCeEEEEEecC---CCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467          488 L-NGHREPVYSLAFSPTGEYL-ASGSLDKSMHIWSLKEGKIVKTYTGN---GGIFEVCWNKEGDKIAACFANHTVCVLD  561 (564)
Q Consensus       488 ~-~~h~~~i~~~~~spdg~~l-asgs~dg~i~iw~~~~~~~~~~~~~~---~~i~~~~w~~~g~~la~~~~~~~v~v~~  561 (564)
                      + .......+.|+|+|++..| ++-+..+.|.++++............   .....|++..+ ..+.+...++.|.++|
T Consensus       534 l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d  611 (699)
T 1n7d_A          534 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSAN  611 (699)
T ss_dssp             ESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEE
T ss_pred             EEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEE
Confidence            2 1122345789999986555 44456678999998643322222211   22445666544 3444555667787776

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.94  E-value=0.049  Score=53.26  Aligned_cols=133  Identities=15%  Similarity=0.154  Sum_probs=83.0

Q ss_pred             CeEEEEEcCCCceeeEecCC----CcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCe------------eeeeccc---
Q 008467          379 NMIYVCKIGENRPIKTFAGH----QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK------------YVHDLRE---  439 (564)
Q Consensus       379 ~~i~~~~~~~~~~~~~~~~h----~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~------------~~~~~~~---  439 (564)
                      +.|+.+++......+.+.--    -..|..+..+|+|++||..+. ..|.|-.+..+.            ....+.-   
T Consensus        41 n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~  119 (452)
T 3pbp_A           41 NIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE  119 (452)
T ss_dssp             TEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC
T ss_pred             CEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCc
Confidence            44555555533333333322    225778999999999988765 478887765221            0112221   


Q ss_pred             ---ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC--eEEEEEe---------CCCCCEEEEEEcCCCC
Q 008467          440 ---HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG--KLLYSLN---------GHREPVYSLAFSPTGE  505 (564)
Q Consensus       440 ---~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~---------~h~~~i~~~~~spdg~  505 (564)
                         ...+|..+.|+|.+..      ...|++-..|++||+||+...  ++. .++         .....|.+++|+++|-
T Consensus       120 ~~~~~s~I~qVlWHPl~~~------ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~l  192 (452)
T 3pbp_A          120 EVGPKSSIKKVLFHPKSYR------DSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGL  192 (452)
T ss_dssp             C--CCCCEEEEEECTTBGG------GCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSS
T ss_pred             ccCCCCceeEEEeccccCC------CCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCc
Confidence               2467999999998752      125677778999999999752  112 222         2235689999999886


Q ss_pred             EEEEEe--CCCcEEEE
Q 008467          506 YLASGS--LDKSMHIW  519 (564)
Q Consensus       506 ~lasgs--~dg~i~iw  519 (564)
                      .|...+  ..|-|+-.
T Consensus       193 TLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          193 TLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             CEEEEECTTSCEEEEE
T ss_pred             EEEEEecCCCCCEEEE
Confidence            666544  77777643

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.94  E-value=0.32  Score=47.10  Aligned_cols=101  Identities=14%  Similarity=0.148  Sum_probs=57.2

Q ss_pred             cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC----CCEEEE
Q 008467          217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE----GTLLAT  292 (564)
Q Consensus       217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~----g~~l~s  292 (564)
                      .....++|.|+|+++++ ..+|.|++++  ++..           ..+.... ...........++|+|+    +.+.++
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~-----------~~~~~~~-v~~~g~~~p~gia~~pdf~~~g~lYv~   95 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRL-----------STYAELS-VYHRGESGLLGLALHPRFPQEPYVYAY   95 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEE-----------EEEEECC-CCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCc-----------cEeecce-EeecCCCCceeEEECCCCCCCCEEEEE
Confidence            34678999999996665 5668888887  3321           0111111 11112345789999998    444444


Q ss_pred             EeCC-----CeEEEEECCCc-------eeEeec-----CCCCCEEEEEeCCCCCEEEEe
Q 008467          293 GSYD-----GQARIWSTNGD-------LKCTLS-----KHKGPIFSLKWNKKGDYLLTG  334 (564)
Q Consensus       293 g~~d-----g~i~vw~~~~~-------~~~~~~-----~h~~~V~~l~~~~~~~~l~s~  334 (564)
                      -...     +.|..++..+.       +...+.     .|.  ...++|.|+|...++.
T Consensus        96 ~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~  152 (352)
T 2ism_A           96 RTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHS--GGRIAFGPDGMLYVTT  152 (352)
T ss_dssp             EEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCC--CCCEEECTTSCEEEEC
T ss_pred             EecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcC--CceEEECCCCCEEEEE
Confidence            3332     56666765532       111122     122  2578999999766654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.91  E-value=0.094  Score=50.71  Aligned_cols=153  Identities=13%  Similarity=0.096  Sum_probs=89.3

Q ss_pred             EEEEECCCCCEEEEEe------------CCCcEEEEeCCCCe-eeeec--cc-----ccccEEEEEEccCCCCCCCCCCc
Q 008467          403 NCVKWDPTGSLLASCS------------DDVTAKIWNMKQDK-YVHDL--RE-----HSKEIYTIRWSPTGSGTNNPNQQ  462 (564)
Q Consensus       403 ~~v~~~~~~~~las~s------------~dg~i~iwd~~~~~-~~~~~--~~-----~~~~i~~i~~~p~~~~~~~~~~~  462 (564)
                      ..+...|+|..+++++            .+|.|.++|.++.. ....+  .+     ..-....+.+.++.      ++.
T Consensus        53 EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~------dg~  126 (355)
T 3sre_A           53 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDD------DNT  126 (355)
T ss_dssp             CEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECT------TCC
T ss_pred             ceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECC------CCc
Confidence            3566778776666552            68999999987421 11122  11     11234555554431      111


Q ss_pred             EEEEEE-eC--CCeEEEEeCCC--CeE--EEEEeCC-CCCEEEEEEcCCCCEEEEEeC-----------------CCcEE
Q 008467          463 LILASA-SF--DSTVKLWDVEL--GKL--LYSLNGH-REPVYSLAFSPTGEYLASGSL-----------------DKSMH  517 (564)
Q Consensus       463 ~~l~s~-s~--dg~i~iwd~~~--~~~--~~~~~~h-~~~i~~~~~spdg~~lasgs~-----------------dg~i~  517 (564)
                      ..|..+ ..  +.+|.+|++..  +..  +.++.+. -...+++++.++|.++++...                 .|.|.
T Consensus       127 ~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vy  206 (355)
T 3sre_A          127 VYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT  206 (355)
T ss_dssp             EEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred             EEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEE
Confidence            223333 22  56788887654  222  2334332 235799999999999887651                 24555


Q ss_pred             EEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEE-cCCcEEEEEee
Q 008467          518 IWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACF-ANHTVCVLDFR  563 (564)
Q Consensus       518 iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~-~~~~v~v~~~~  563 (564)
                      -++.  +++.....+-...+.++|+|||+.|.++. ..+.|.+|+++
T Consensus       207 r~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~  251 (355)
T 3sre_A          207 YYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKH  251 (355)
T ss_dssp             EECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             EEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence            5554  34333334445578999999999887774 46788888874

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.80  E-value=0.19  Score=48.51  Aligned_cols=165  Identities=15%  Similarity=0.142  Sum_probs=92.7

Q ss_pred             CCCcEEEEECCC--cceeEEEeec-------ccCeEEEEcC---CC--ceEEEEeC--CCeEEEEEcCCCc----eeeEe
Q 008467          336 CDKTAIVWDVKT--EEWKQQFEFH-------SGPTLDVDWR---NN--VSFATSST--DNMIYVCKIGENR----PIKTF  395 (564)
Q Consensus       336 ~D~~v~iwd~~~--~~~~~~~~~~-------~~~~~~~~~~---~~--~~~~~~~~--d~~i~~~~~~~~~----~~~~~  395 (564)
                      .+|.|.++|+.+  .+. ..+...       ......++..   ++  ..|++-..  +..|.++++....    .+..+
T Consensus        81 ~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~  159 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTI  159 (355)
T ss_dssp             -CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEE
T ss_pred             CCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecc
Confidence            688999999873  222 222221       1234444432   12  23444443  4566676665432    23334


Q ss_pred             cCCC-cceEEEEECCCCCEEEEEeC-----------------CCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCC
Q 008467          396 AGHQ-GEVNCVKWDPTGSLLASCSD-----------------DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTN  457 (564)
Q Consensus       396 ~~h~-~~i~~v~~~~~~~~las~s~-----------------dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~  457 (564)
                      .+.. ...+.+.+.++|.+.++..-                 .|.+.-++.  ++. ..+...-..-..++|+|++.   
T Consensus       160 ~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~-~~~~~~l~~pNGia~spDg~---  233 (355)
T 3sre_A          160 RHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDV-RVVAEGFDFANGINISPDGK---  233 (355)
T ss_dssp             CCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCC-EEEEEEESSEEEEEECTTSS---
T ss_pred             ccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeE-EEeecCCcccCcceECCCCC---
Confidence            3322 35789999999998887641                 233444443  322 22222223457899999875   


Q ss_pred             CCCCcEEEEEEeCCCeEEEEeCCC-CeE--EEEEeCCCCCEEEEEEcC-CCCEEEEEeCC
Q 008467          458 NPNQQLILASASFDSTVKLWDVEL-GKL--LYSLNGHREPVYSLAFSP-TGEYLASGSLD  513 (564)
Q Consensus       458 ~~~~~~~l~s~s~dg~i~iwd~~~-~~~--~~~~~~h~~~i~~~~~sp-dg~~lasgs~d  513 (564)
                           .+.++-+..+.|..|++.. ++.  ...+. .......+++.+ +|++.+++..+
T Consensus       234 -----~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwva~~~~  287 (355)
T 3sre_A          234 -----YVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGCHPN  287 (355)
T ss_dssp             -----EEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEEESC
T ss_pred             -----EEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEEEecCC
Confidence                 3555566778999999863 332  12332 234567899999 59988876544

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.25  E-value=0.31  Score=45.84  Aligned_cols=223  Identities=11%  Similarity=0.124  Sum_probs=109.2

Q ss_pred             CCCEEEEEe-CC-----CeEEEEECCCceeEeecCC---CCCEEEEEeCCCCCEEEEeeCC-----CcEEEEECCCcc--
Q 008467          286 EGTLLATGS-YD-----GQARIWSTNGDLKCTLSKH---KGPIFSLKWNKKGDYLLTGSCD-----KTAIVWDVKTEE--  349 (564)
Q Consensus       286 ~g~~l~sg~-~d-----g~i~vw~~~~~~~~~~~~h---~~~V~~l~~~~~~~~l~s~s~D-----~~v~iwd~~~~~--  349 (564)
                      ++.+++.|+ .+     ..+.++|.....-..+...   ......+.  .++..++.|+.+     ..+.+||+.+.+  
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~   91 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDG   91 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence            345566666 32     3677788655433322211   11111222  245666677755     468999998888  


Q ss_pred             -eeEEEeecccC-eEEEEcCCCceEEEEeCC-----CeEEEEEcCCCce--eeEecCCCcceEEEEECCCCCEEEEEeCC
Q 008467          350 -WKQQFEFHSGP-TLDVDWRNNVSFATSSTD-----NMIYVCKIGENRP--IKTFAGHQGEVNCVKWDPTGSLLASCSDD  420 (564)
Q Consensus       350 -~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d-----~~i~~~~~~~~~~--~~~~~~h~~~i~~v~~~~~~~~las~s~d  420 (564)
                       |...-...... ...+...++..++.++.+     ..+.+++..+..-  +..+......-.++.+  ++++++.|+.+
T Consensus        92 ~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~  169 (301)
T 2vpj_A           92 VWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYD  169 (301)
T ss_dssp             CCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred             eeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCC
Confidence             76543221111 111222355566666533     3577788765532  1111111111222333  67777777754


Q ss_pred             -----CcEEEEeCCCCeeeee--cccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC-----CeEEEEeCCCCeEEEE-
Q 008467          421 -----VTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-----STVKLWDVELGKLLYS-  487 (564)
Q Consensus       421 -----g~i~iwd~~~~~~~~~--~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~-  487 (564)
                           ..+.+||..+......  +.........+.+  +        + .+++.|+.+     ..+.+||+.+.+-... 
T Consensus       170 ~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~--------~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~  238 (301)
T 2vpj_A          170 GLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--N--------D-HIYVVGGFDGTAHLSSVEAYNIRTDSWTTVT  238 (301)
T ss_dssp             SSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--T--------T-EEEEECCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred             CCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--C--------C-EEEEEeCCCCCcccceEEEEeCCCCcEEECC
Confidence                 3578888876654321  1110001111111  1        1 245555543     4688999987653211 


Q ss_pred             -EeCCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCe
Q 008467          488 -LNGHREPVYSLAFSPTGEYLASGSLD-----KSMHIWSLKEGK  525 (564)
Q Consensus       488 -~~~h~~~i~~~~~spdg~~lasgs~d-----g~i~iw~~~~~~  525 (564)
                       +.........+.+  +++.++.|+.+     ..|.+||..+.+
T Consensus       239 ~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          239 SMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             CCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             CCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence             1111111122233  67777777765     357788887654

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.22  E-value=1  Score=44.15  Aligned_cols=210  Identities=13%  Similarity=0.189  Sum_probs=133.6

Q ss_pred             eCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcC-CCceeeEecCCCc--
Q 008467          324 WNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIG-ENRPIKTFAGHQG--  400 (564)
Q Consensus       324 ~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~~~~~~~~h~~--  400 (564)
                      .+|..+.++-=+ ..++.|+|+.+...+..+.+.. ++.=-.|.+...++.. ++..||.|++. ...|++.|..|..  
T Consensus        73 MnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~~l~lV-T~taVyHWsi~~~s~P~kvFdR~~~L~  149 (494)
T 1bpo_A           73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALV-TDNAVYHWSMEGESQPVKMFDRHSSLA  149 (494)
T ss_dssp             ECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETTEEEEE-CSSEEEEEESSSSCCCEEEEECCGGGT
T ss_pred             eCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCCCeEEEE-cCCeeEEecccCCCCchhheecchhcc
Confidence            466665544333 6799999999998888777655 3444567666655443 46789999996 4578888887753  


Q ss_pred             --ceEEEEECCCCCEEEEEe-------CCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC
Q 008467          401 --EVNCVKWDPTGSLLASCS-------DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD  471 (564)
Q Consensus       401 --~i~~v~~~~~~~~las~s-------~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d  471 (564)
                        .|..-..+++.++++..+       -.|.+.+|....+. -+.+.+|......+..  +|.    +....+++-+...
T Consensus       150 ~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~--~g~----~~~~~lf~fa~r~  222 (494)
T 1bpo_A          150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKM--EGN----AEESTLFCFAVRG  222 (494)
T ss_dssp             TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEEEEEC--TTC----SSEEEEEEEEECS
T ss_pred             cceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeeeEEEec--CCC----CCCceEEEEEEec
Confidence              466777899999876433       24677889876543 3456677665444332  221    1122345555543


Q ss_pred             ---CeEEEEeCCCC--------eEEEEE--e--CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec-CCC
Q 008467          472 ---STVKLWDVELG--------KLLYSL--N--GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGG  535 (564)
Q Consensus       472 ---g~i~iwd~~~~--------~~~~~~--~--~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~-~~~  535 (564)
                         +.++|.++...        +....+  .  .-.+---++..|+.-..+..-+.-|.|++||+.+|.++..-+- ...
T Consensus       223 ~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~  302 (494)
T 1bpo_A          223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGET  302 (494)
T ss_dssp             TTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             CCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCc
Confidence               78888887532        111111  0  1123345778888878888889999999999999998765543 233


Q ss_pred             EEEEEEcc
Q 008467          536 IFEVCWNK  543 (564)
Q Consensus       536 i~~~~w~~  543 (564)
                      |+--+-+.
T Consensus       303 iF~t~~~~  310 (494)
T 1bpo_A          303 IFVTAPHE  310 (494)
T ss_dssp             EEEEEEET
T ss_pred             eEEecccC
Confidence            44444333

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.14  E-value=1.7  Score=45.73  Aligned_cols=151  Identities=10%  Similarity=0.005  Sum_probs=83.8

Q ss_pred             cceEEEEECCCCC-EEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeC
Q 008467          217 SEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY  295 (564)
Q Consensus       217 ~~V~~~~~sp~~~-~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~  295 (564)
                      .....+++.+.+. +..+-...+.|.+.++.....         ..+ ..       ..-.....+++.|....|.....
T Consensus        80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~---------~~l-~~-------~~l~~P~~iavdp~~G~lY~tD~  142 (628)
T 4a0p_A           80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR---------QVL-VW-------KDLDSPRALALDPAEGFMYWTEW  142 (628)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC---------EEE-EC-------SSCCCEEEEEEETTTTEEEEEEC
T ss_pred             CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE---------EEE-Ee-------CCCCCcccEEEccCCCeEEEeCC
Confidence            3466788887655 445555667888888753211         111 10       11234578899985444444442


Q ss_pred             --CCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEee-CCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceE
Q 008467          296 --DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF  372 (564)
Q Consensus       296 --dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (564)
                        .+.|...+.+|.....+...-....+|++++++..|+.+. ..+.|...|+..... ..+.........+....+..|
T Consensus       143 g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~~~ly  221 (628)
T 4a0p_A          143 GGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQDYIY  221 (628)
T ss_dssp             SSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEETTEEE
T ss_pred             CCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEECCEEE
Confidence              4677777888765554443445568899999877776554 456788888865433 222222222233333334444


Q ss_pred             EEEeCCCeEEEEE
Q 008467          373 ATSSTDNMIYVCK  385 (564)
Q Consensus       373 ~~~~~d~~i~~~~  385 (564)
                      .+-...+.|...+
T Consensus       222 ~tD~~~~~I~~~d  234 (628)
T 4a0p_A          222 WTDWSRRSIERAN  234 (628)
T ss_dssp             EEETTTTEEEEEE
T ss_pred             EecCCCCEEEEEE
Confidence            4444444444444

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.09  E-value=1.1  Score=43.30  Aligned_cols=101  Identities=14%  Similarity=0.133  Sum_probs=56.4

Q ss_pred             cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC----CCEEEE
Q 008467          217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE----GTLLAT  292 (564)
Q Consensus       217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~----g~~l~s  292 (564)
                      .....++|.|+|+++++ ..+|.|++++ .++.          .  .+.... ...........|+++|+    +.+.++
T Consensus        29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~----------~--~~~~~~-v~~~g~~g~~gia~~pdf~~~g~lyv~   93 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGK----------K--LVASFD-VANVGEAGLLGLALHPEFPKKSWVYLY   93 (354)
T ss_dssp             SCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCE----------E--EEEECC-CCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred             CCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCc----------e--Eeeccc-eeecCCCceeeEEeCCCCCcCCEEEEE
Confidence            45678999999986665 5568888886 2221          0  011111 01111245789999997    444444


Q ss_pred             EeC---C----CeEEEEECCCc------ee---Eeec---CCCCCEEEEEeCCCCCEEEEe
Q 008467          293 GSY---D----GQARIWSTNGD------LK---CTLS---KHKGPIFSLKWNKKGDYLLTG  334 (564)
Q Consensus       293 g~~---d----g~i~vw~~~~~------~~---~~~~---~h~~~V~~l~~~~~~~~l~s~  334 (564)
                      -+.   +    +.|..|+..+.      ..   ..+.   .|.  ...|.|.|+|...++.
T Consensus        94 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~--~~~l~~~pDG~Lyvt~  152 (354)
T 3a9g_A           94 ASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHN--GGRIRFGPDGMLYITT  152 (354)
T ss_dssp             EEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCC--CCCEEECTTSCEEEEC
T ss_pred             EeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcC--CceEEECCCCcEEEEE
Confidence            332   2    45666665432      11   1122   232  2568999999866664

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.86  E-value=0.96  Score=45.45  Aligned_cols=109  Identities=10%  Similarity=0.126  Sum_probs=60.9

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCee--eeeccc------ccccEEEEEEccCCCCCCCCCCcEEEEEEeC-
Q 008467          400 GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY--VHDLRE------HSKEIYTIRWSPTGSGTNNPNQQLILASASF-  470 (564)
Q Consensus       400 ~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~--~~~~~~------~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~-  470 (564)
                      .....++|.|+|+++++-...+.|++++..++..  +..+..      .......|+|+|+-.    .+..++++.... 
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~----~~g~lYv~~s~~~  102 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFK----NNPYIYISGTFKN  102 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTT----TSCEEEEEEEEEC
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcC----cCCEEEEEEeccc
Confidence            3567899999999887655445788887654432  222221      234567899998521    112234433220 


Q ss_pred             ----------CCeEEEEeCCCC-------eEEEE-EeC-CCCCEEEEEEcCCCCEEEEEeC
Q 008467          471 ----------DSTVKLWDVELG-------KLLYS-LNG-HREPVYSLAFSPTGEYLASGSL  512 (564)
Q Consensus       471 ----------dg~i~iwd~~~~-------~~~~~-~~~-h~~~i~~~~~spdg~~lasgs~  512 (564)
                                ...|.-|+...+       +.+.. +.. .......|+|.|||.++++.+.
T Consensus       103 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          103 PKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             TTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             cCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                      124544544321       22222 221 1124689999999998777553

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=95.69  E-value=0.48  Score=44.48  Aligned_cols=210  Identities=11%  Similarity=0.109  Sum_probs=100.6

Q ss_pred             CcEEEEECCCcceeEEEeeccc-CeEEEEcCCCceEEEEeCC-----CeEEEEEcCCCc---e--eeEecCCCcceEEEE
Q 008467          338 KTAIVWDVKTEEWKQQFEFHSG-PTLDVDWRNNVSFATSSTD-----NMIYVCKIGENR---P--IKTFAGHQGEVNCVK  406 (564)
Q Consensus       338 ~~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d-----~~i~~~~~~~~~---~--~~~~~~h~~~i~~v~  406 (564)
                      ..+.+||+.+.+|...-..... ....+...++..++.++.+     ..+++++..+..   -  +..+........++.
T Consensus        31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~  110 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT  110 (301)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE
T ss_pred             eEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE
Confidence            3688899988877653221111 1112222345566666543     357888876654   1  111111111222233


Q ss_pred             ECCCCCEEEEEeCCC-----cEEEEeCCCCeeee--ecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC-----CeE
Q 008467          407 WDPTGSLLASCSDDV-----TAKIWNMKQDKYVH--DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-----STV  474 (564)
Q Consensus       407 ~~~~~~~las~s~dg-----~i~iwd~~~~~~~~--~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d-----g~i  474 (564)
                      +  ++++++.|+.++     .+.+||..+.....  .+.........+.+  +        +. +++.|+.+     ..+
T Consensus       111 ~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~--------~~-iyv~GG~~~~~~~~~~  177 (301)
T 2vpj_A          111 L--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--S--------GV-IYCLGGYDGLNILNSV  177 (301)
T ss_dssp             E--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--T--------TE-EEEECCBCSSCBCCCE
T ss_pred             E--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--C--------CE-EEEECCCCCCcccceE
Confidence            3  577777776543     57788877655322  11110000111111  1        12 44445443     458


Q ss_pred             EEEeCCCCeEEEE--EeCCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCeEEEEEecC-CCEEEEEEccCCC
Q 008467          475 KLWDVELGKLLYS--LNGHREPVYSLAFSPTGEYLASGSLD-----KSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGD  546 (564)
Q Consensus       475 ~iwd~~~~~~~~~--~~~h~~~i~~~~~spdg~~lasgs~d-----g~i~iw~~~~~~~~~~~~~~-~~i~~~~w~~~g~  546 (564)
                      .+||+.+.+-...  +.........+.+  +++.++.|+.+     ..|.+||..+.+-...-... ......+..-+++
T Consensus       178 ~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~  255 (301)
T 2vpj_A          178 EKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGR  255 (301)
T ss_dssp             EEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTE
T ss_pred             EEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEECCE
Confidence            8889876643211  1111111122333  56777777764     46899999877543221111 1111111122566


Q ss_pred             EEEEEEcC-----CcEEEEEe
Q 008467          547 KIAACFAN-----HTVCVLDF  562 (564)
Q Consensus       547 ~la~~~~~-----~~v~v~~~  562 (564)
                      .++.|..+     ..+.+||.
T Consensus       256 i~v~GG~~~~~~~~~v~~yd~  276 (301)
T 2vpj_A          256 LYAIAGYDGNSLLSSIECYDP  276 (301)
T ss_dssp             EEEECCBCSSSBEEEEEEEET
T ss_pred             EEEEcCcCCCcccccEEEEcC
Confidence            66776544     24566665

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=95.67  E-value=0.72  Score=43.27  Aligned_cols=222  Identities=15%  Similarity=0.157  Sum_probs=105.3

Q ss_pred             CCEEEEEeCC----CeEEEEECCCceeEeecCCCC---CEEEEEeCCCCCEEEEeeCC-----CcEEEEECCCcceeEEE
Q 008467          287 GTLLATGSYD----GQARIWSTNGDLKCTLSKHKG---PIFSLKWNKKGDYLLTGSCD-----KTAIVWDVKTEEWKQQF  354 (564)
Q Consensus       287 g~~l~sg~~d----g~i~vw~~~~~~~~~~~~h~~---~V~~l~~~~~~~~l~s~s~D-----~~v~iwd~~~~~~~~~~  354 (564)
                      +.+++.|+.+    ..+.++|.....-..+.....   .-..+..  ++..++.|+.+     ..+.+||+.+.+|...-
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~   93 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA   93 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence            3455555543    356677765443322211111   1111222  45566677654     35889999988876643


Q ss_pred             eecccC-eEEEEcCCCceEEEEeCCC-----eEEEEEcCCCcee--eEecCCCcceEEEEECCCCCEEEEEeCC------
Q 008467          355 EFHSGP-TLDVDWRNNVSFATSSTDN-----MIYVCKIGENRPI--KTFAGHQGEVNCVKWDPTGSLLASCSDD------  420 (564)
Q Consensus       355 ~~~~~~-~~~~~~~~~~~~~~~~~d~-----~i~~~~~~~~~~~--~~~~~h~~~i~~v~~~~~~~~las~s~d------  420 (564)
                      ...... ...+...++..++.++.++     .+.+++..+..-.  ..+........++.+  ++++++.|+.+      
T Consensus        94 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~  171 (302)
T 2xn4_A           94 NMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQC  171 (302)
T ss_dssp             CCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEE
T ss_pred             CCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCcc
Confidence            221111 1122223555666665432     4667776654311  111111111222333  56777776643      


Q ss_pred             -CcEEEEeCCCCeeeee--cccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC-----CeEEEEeCCCCeEEE--EEeC
Q 008467          421 -VTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-----STVKLWDVELGKLLY--SLNG  490 (564)
Q Consensus       421 -g~i~iwd~~~~~~~~~--~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~--~~~~  490 (564)
                       ..+.+||..+......  +.........+.+  +        + .+++.|+.+     ..+.+||+.+.+=..  .+..
T Consensus       172 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~--------~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~  240 (302)
T 2xn4_A          172 LSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--N--------N-LLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNM  240 (302)
T ss_dssp             CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--T--------T-EEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSS
T ss_pred             ccEEEEEeCCCCcEEECCCCccccccccEEEE--C--------C-EEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCC
Confidence             3478888876654321  1111001111111  1        1 245555543     368899988764221  1111


Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCe
Q 008467          491 HREPVYSLAFSPTGEYLASGSLDK-----SMHIWSLKEGK  525 (564)
Q Consensus       491 h~~~i~~~~~spdg~~lasgs~dg-----~i~iw~~~~~~  525 (564)
                      .......+.+  +++.++.|+.++     .|.+||..+.+
T Consensus       241 ~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          241 CRRNAGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             CCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             ccccCeEEEE--CCEEEEECCcCCCcccccEEEEcCCCCe
Confidence            1111122222  677777777653     48888887654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=95.38  E-value=1.3  Score=41.50  Aligned_cols=221  Identities=9%  Similarity=0.080  Sum_probs=108.3

Q ss_pred             CEEEEEeCC--CeEEEEECCCceeEeecC---CCCCEEEEEeCCCCCEEEEeeCC----CcEEEEECCCcceeEEEeecc
Q 008467          288 TLLATGSYD--GQARIWSTNGDLKCTLSK---HKGPIFSLKWNKKGDYLLTGSCD----KTAIVWDVKTEEWKQQFEFHS  358 (564)
Q Consensus       288 ~~l~sg~~d--g~i~vw~~~~~~~~~~~~---h~~~V~~l~~~~~~~~l~s~s~D----~~v~iwd~~~~~~~~~~~~~~  358 (564)
                      .+++.|+.+  ..+.+||.....-..+..   ....-..+.  -++..++.|+.+    ..+.+||+.+.+|...-....
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~   90 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT   90 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence            455566653  567788866543322211   111111222  245566677655    678899999988765433221


Q ss_pred             cC-eEEEEcCCCceEEEEeCC------CeEEEEEcCCCceee--EecCCCcceEEEEECCCCCEEEEEeC---------C
Q 008467          359 GP-TLDVDWRNNVSFATSSTD------NMIYVCKIGENRPIK--TFAGHQGEVNCVKWDPTGSLLASCSD---------D  420 (564)
Q Consensus       359 ~~-~~~~~~~~~~~~~~~~~d------~~i~~~~~~~~~~~~--~~~~h~~~i~~v~~~~~~~~las~s~---------d  420 (564)
                      .. ...+...++..++.++.+      ..+++++..+..=..  .+........++.+  ++++++.|+.         -
T Consensus        91 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~  168 (306)
T 3ii7_A           91 PRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVL  168 (306)
T ss_dssp             CCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEEC
T ss_pred             cccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCccccc
Confidence            11 112222355566666544      357788876653111  11111111122222  5677777654         2


Q ss_pred             CcEEEEeCCCCeeeee--cccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC-----CeEEEEeCCCCeEE--EEEeCC
Q 008467          421 VTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-----STVKLWDVELGKLL--YSLNGH  491 (564)
Q Consensus       421 g~i~iwd~~~~~~~~~--~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~--~~~~~h  491 (564)
                      ..+.+||..+......  +.........+..  .        +. +++.|+.+     ..+.+||+.+.+=.  ..+...
T Consensus       169 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~--------~~-i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~  237 (306)
T 3ii7_A          169 NSCEVYDPATETWTELCPMIEARKNHGLVFV--K--------DK-IFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWK  237 (306)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--T--------TE-EEEECCEETTEEBCCEEEEETTTTEEEECCCCSCC
T ss_pred             ceEEEeCCCCCeEEECCCccchhhcceEEEE--C--------CE-EEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCC
Confidence            3477888877654321  1110000011111  1        12 44444432     35788898765421  111111


Q ss_pred             CCCEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCe
Q 008467          492 REPVYSLAFSPTGEYLASGSLD-----KSMHIWSLKEGK  525 (564)
Q Consensus       492 ~~~i~~~~~spdg~~lasgs~d-----g~i~iw~~~~~~  525 (564)
                      ......+.+  ++++++.|+.+     ..|.+||..+.+
T Consensus       238 r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          238 GVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             BSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             ccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence            122233333  67788888754     468889988764

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.09  E-value=2.2  Score=40.71  Aligned_cols=188  Identities=12%  Similarity=0.134  Sum_probs=102.8

Q ss_pred             CEEEEEeCCCeEEEEEC-CCceeEeecCC-CCCEEEEEeC--CCCCEEEEe--eCCCcEEEEECCCcceeEEEeec----
Q 008467          288 TLLATGSYDGQARIWST-NGDLKCTLSKH-KGPIFSLKWN--KKGDYLLTG--SCDKTAIVWDVKTEEWKQQFEFH----  357 (564)
Q Consensus       288 ~~l~sg~~dg~i~vw~~-~~~~~~~~~~h-~~~V~~l~~~--~~~~~l~s~--s~D~~v~iwd~~~~~~~~~~~~~----  357 (564)
                      .+++.++.||.|.-.|. +|+.+..+... ..++....-.  +.+..++.+  +.||.+..+|..+|.....+...    
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            46788899999999985 46666665433 1333332111  112244433  68999999999888655433321    


Q ss_pred             ccCeEE-EE--------cCCCceEEEEeCCCeEEEEEcCCCceeeEecCCC--c-----ceEEEEEC-----CCCCEEEE
Q 008467          358 SGPTLD-VD--------WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ--G-----EVNCVKWD-----PTGSLLAS  416 (564)
Q Consensus       358 ~~~~~~-~~--------~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~--~-----~i~~v~~~-----~~~~~las  416 (564)
                      ..+... ..        -..+..+.+++.++.++..+..+++.+..+....  +     ...|....     -.+..|+.
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i  170 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI  170 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence            112221 00        0145567788899999999999999888776321  1     11122211     12345667


Q ss_pred             EeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCC-------CCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE
Q 008467          417 CSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSG-------TNNPNQQLILASASFDSTVKLWDVELGKLLY  486 (564)
Q Consensus       417 ~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~-------~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~  486 (564)
                      +..+..+.+.+ ++++ +..+       ..-.|.+....       ....+.. + +.++.||.|.-+|..+|+.++
T Consensus       171 g~~~y~v~~~~-~sG~-~W~~-------~~s~~~~~~~~~~~~~~~~~s~Dg~-~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          171 GKTIFELGIHS-YDGA-SYNV-------TYSTWQQNVLDVPLALQNTFSKDGM-C-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EEEEEECEECC-TTSC-CCCC-------EEEEEECCTTTHHHHTTCSSCSSSC-C-EEEETTTEEEEECSTTCCEEE
T ss_pred             ecceEEEEEEC-CCCC-eEEE-------ecccccccccccccccccccccCCc-E-EEECCCCEEEEEECCCCcEEE
Confidence            77776666655 3332 1111       11123222110       0001122 2 347899999999999999887

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.00  E-value=0.18  Score=48.29  Aligned_cols=195  Identities=12%  Similarity=0.028  Sum_probs=103.1

Q ss_pred             CEEEEeeCCCcEEEEECCCcceeEEEeecc-cCeEEEEcC----CCceEEEE-eCCCeEEEEEcCCCceeeEecC----C
Q 008467          329 DYLLTGSCDKTAIVWDVKTEEWKQQFEFHS-GPTLDVDWR----NNVSFATS-STDNMIYVCKIGENRPIKTFAG----H  398 (564)
Q Consensus       329 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~-~~d~~i~~~~~~~~~~~~~~~~----h  398 (564)
                      ..++.++.||.|.-.|..+|+.+-++.... .+.+...-.    ++..++.. ..||.++.++..++.....+.-    .
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            468899999999999999998877766541 233322111    22334443 6899999998876643322211    1


Q ss_pred             CcceEE---EEE-C----CCCCEEEEEeCCCcEEEEeCCCCeeeeecccccc--cE---EEEEEccCCCCCCCCCCcEEE
Q 008467          399 QGEVNC---VKW-D----PTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK--EI---YTIRWSPTGSGTNNPNQQLIL  465 (564)
Q Consensus       399 ~~~i~~---v~~-~----~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~--~i---~~i~~~p~~~~~~~~~~~~~l  465 (564)
                      ..++..   ... .    ..+..+++|+.+|.+...|..+++.+..+.....  .+   ...+.... .. ........+
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~-d~-~~d~~~~~v  168 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEE-KI-KLQECENMI  168 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC----------------------CCEE
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccccccc-cc-ccccCCCeE
Confidence            111211   000 0    0355778999999999999999998877653211  00   00000000 00 000000134


Q ss_pred             EEEeCCCeEEEEeCCCCeEEEEE-----eCCCCC--E-EEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 008467          466 ASASFDSTVKLWDVELGKLLYSL-----NGHREP--V-YSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK  528 (564)
Q Consensus       466 ~s~s~dg~i~iwd~~~~~~~~~~-----~~h~~~--i-~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~  528 (564)
                      ..+..+..+.+.+ ++|+ ++.+     ......  + ..-.++.|+.+++ ++.||.|.-+|..+|+.+.
T Consensus       169 ~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~-~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          169 VIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCIA-PFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCEE-EETTTEEEEECSTTCCEEE
T ss_pred             EEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcEEE-ECCCCEEEEEECCCCcEEE
Confidence            5556666666655 3443 2211     111000  0 0001123566644 7889999999998888765

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=94.93  E-value=0.65  Score=44.94  Aligned_cols=145  Identities=9%  Similarity=0.091  Sum_probs=75.5

Q ss_pred             ceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCe--eeeec----ccccccEEEEEEccCCCCCCCCCCcEEEEEEeC---
Q 008467          401 EVNCVKWDPTGS-LLASCSDDVTAKIWNMKQDK--YVHDL----REHSKEIYTIRWSPTGSGTNNPNQQLILASASF---  470 (564)
Q Consensus       401 ~i~~v~~~~~~~-~las~s~dg~i~iwd~~~~~--~~~~~----~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~---  470 (564)
                      ....++|.|+|+ +++ +...|.|++++.....  .+..+    .........++++|+-.    .+..++++....   
T Consensus        19 ~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~----~~g~lYv~~~~~~~~   93 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLI-TLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFA----QSRRIWLSYSEVGDD   93 (353)
T ss_dssp             SEEEEEECSTTCCEEE-EETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHH----HHCEEEEEEEEECSS
T ss_pred             CcEEEEEcCCCCEEEE-EeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCC----CCCEEEEEEeCCCCC
Confidence            456899999999 665 4567999999854221  11111    11123467899988510    001233332221   


Q ss_pred             ---CCeEEEEeCCCC--e-----EEEE-Ee---CCCCCEEEEEEcCCCCEEEEEeCC-------------CcEEEEeCCC
Q 008467          471 ---DSTVKLWDVELG--K-----LLYS-LN---GHREPVYSLAFSPTGEYLASGSLD-------------KSMHIWSLKE  523 (564)
Q Consensus       471 ---dg~i~iwd~~~~--~-----~~~~-~~---~h~~~i~~~~~spdg~~lasgs~d-------------g~i~iw~~~~  523 (564)
                         ...|..|++..+  .     .+.. +.   ........|+|.|||.++++-+..             |.|.-++.. 
T Consensus        94 g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d-  172 (353)
T 2g8s_A           94 GKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQ-  172 (353)
T ss_dssp             SCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETT-
T ss_pred             CCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCC-
Confidence               234555655432  1     1111 11   001113579999999766665432             456666654 


Q ss_pred             Ce-------------EEEEEe-cCCCEEEEEEcc-CCCEEEEE
Q 008467          524 GK-------------IVKTYT-GNGGIFEVCWNK-EGDKIAAC  551 (564)
Q Consensus       524 ~~-------------~~~~~~-~~~~i~~~~w~~-~g~~la~~  551 (564)
                      |+             ....+. +......++|+| +|+..++-
T Consensus       173 G~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d  215 (353)
T 2g8s_A          173 GEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNE  215 (353)
T ss_dssp             SCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEE
T ss_pred             CCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEe
Confidence            22             111222 233478999999 56555543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=94.87  E-value=2.6  Score=39.63  Aligned_cols=219  Identities=11%  Similarity=0.110  Sum_probs=102.0

Q ss_pred             EEEEEeCCCeEEEEECCCceeEe--ecCC-CCCEEEEEeCCCCCEEEEeeC----C-------CcEEEEECCCcceeEEE
Q 008467          289 LLATGSYDGQARIWSTNGDLKCT--LSKH-KGPIFSLKWNKKGDYLLTGSC----D-------KTAIVWDVKTEEWKQQF  354 (564)
Q Consensus       289 ~l~sg~~dg~i~vw~~~~~~~~~--~~~h-~~~V~~l~~~~~~~~l~s~s~----D-------~~v~iwd~~~~~~~~~~  354 (564)
                      +++.|+  ..+.+||.....-..  +... ...-.++. ..++..++.|+.    +       ..+.+||+.+.+|...-
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~   83 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLV-TKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP   83 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEE-CTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEE-EECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence            344455  567888876543221  2111 11122232 346667777763    1       12778899988875532


Q ss_pred             eecccC-eEEEEcCCCceEEEEeCC--------CeEEEEEcCCCce--eeEecCCCcceEEEEECCCCCEEEEEeC-C--
Q 008467          355 EFHSGP-TLDVDWRNNVSFATSSTD--------NMIYVCKIGENRP--IKTFAGHQGEVNCVKWDPTGSLLASCSD-D--  420 (564)
Q Consensus       355 ~~~~~~-~~~~~~~~~~~~~~~~~d--------~~i~~~~~~~~~~--~~~~~~h~~~i~~v~~~~~~~~las~s~-d--  420 (564)
                      ...... ...+...++..++.++.+        ..+++++..+.+=  +..+........++.  .++++++.|+. +  
T Consensus        84 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~  161 (315)
T 4asc_A           84 PLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDR  161 (315)
T ss_dssp             CBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTS
T ss_pred             CCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCC
Confidence            211110 012222355566665521        3477777765431  111111111112222  25677777775 2  


Q ss_pred             ---CcEEEEeCCCCeeeee--cccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCC-----eEEEEeCCCCeEEE--EE
Q 008467          421 ---VTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS-----TVKLWDVELGKLLY--SL  488 (564)
Q Consensus       421 ---g~i~iwd~~~~~~~~~--~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg-----~i~iwd~~~~~~~~--~~  488 (564)
                         ..+.+||..+......  +.........+.+  +        +. +++.|+.++     .+.+||+.+.+=..  .+
T Consensus       162 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~--------~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~  230 (315)
T 4asc_A          162 KCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--D--------GR-IIVAAGVTDTGLTSSAEVYSITDNKWAPFEAF  230 (315)
T ss_dssp             CBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--T--------TE-EEEEEEECSSSEEEEEEEEETTTTEEEEECCC
T ss_pred             cccceEEEEeCCCCeEEECCCCCCchhceEEEEE--C--------CE-EEEEeccCCCCccceEEEEECCCCeEEECCCC
Confidence               3578888876643321  1100000111111  1        22 444555443     57888988764221  11


Q ss_pred             eCCCCCEEEEEEcCCCCEEEEEeCCC--------------cEEEEeCCCCe
Q 008467          489 NGHREPVYSLAFSPTGEYLASGSLDK--------------SMHIWSLKEGK  525 (564)
Q Consensus       489 ~~h~~~i~~~~~spdg~~lasgs~dg--------------~i~iw~~~~~~  525 (564)
                      ...+.....+.+  ++++++.|+.++              .|.+||+.+.+
T Consensus       231 p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  279 (315)
T 4asc_A          231 PQERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK  279 (315)
T ss_dssp             SSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred             CCcccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence            111111122233  567777777642              36677877654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=94.85  E-value=1.4  Score=41.13  Aligned_cols=211  Identities=14%  Similarity=0.144  Sum_probs=98.3

Q ss_pred             CcEEEEECCCcceeEEEeecccC-eEEEEcCCCceEEEEeCC-----CeEEEEEcCCCce--eeEecCCCcceEEEEECC
Q 008467          338 KTAIVWDVKTEEWKQQFEFHSGP-TLDVDWRNNVSFATSSTD-----NMIYVCKIGENRP--IKTFAGHQGEVNCVKWDP  409 (564)
Q Consensus       338 ~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d-----~~i~~~~~~~~~~--~~~~~~h~~~i~~v~~~~  409 (564)
                      ..+.+||+.+..|...-...... ...+...++..++.++.+     ..+++++..+..-  +..+........++.+  
T Consensus        30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--  107 (302)
T 2xn4_A           30 RSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--  107 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--
T ss_pred             CcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--
Confidence            35788888887766532211110 111222355566666533     3467777765431  1111111111222333  


Q ss_pred             CCCEEEEEeCCC-----cEEEEeCCCCeeeee--cccccccEEEEEEccCCCCCCCCCCcEEEEEEeC-------CCeEE
Q 008467          410 TGSLLASCSDDV-----TAKIWNMKQDKYVHD--LREHSKEIYTIRWSPTGSGTNNPNQQLILASASF-------DSTVK  475 (564)
Q Consensus       410 ~~~~las~s~dg-----~i~iwd~~~~~~~~~--~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~-------dg~i~  475 (564)
                      ++++++.|+.++     .+.+||..+......  +.........+.+  +        +. +++.|+.       -..+.
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~--------~~-iyv~GG~~~~~~~~~~~~~  176 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--G--------GL-LYAVGGYDVASRQCLSTVE  176 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--T--------TE-EEEECCEETTTTEECCCEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--C--------CE-EEEEeCCCCCCCccccEEE
Confidence            567777777553     467788776654321  1110000111111  1        12 3344433       23588


Q ss_pred             EEeCCCCeEEE--EEeCCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCeEEEEEecCC-CEEEEEEccCCCE
Q 008467          476 LWDVELGKLLY--SLNGHREPVYSLAFSPTGEYLASGSLD-----KSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDK  547 (564)
Q Consensus       476 iwd~~~~~~~~--~~~~h~~~i~~~~~spdg~~lasgs~d-----g~i~iw~~~~~~~~~~~~~~~-~i~~~~w~~~g~~  547 (564)
                      +||+.+.+=..  .+.........+.+  ++++++.|+.+     ..+.+||..+.+-...-.... ....-+..-+++.
T Consensus       177 ~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i  254 (302)
T 2xn4_A          177 CYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLL  254 (302)
T ss_dssp             EEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEE
T ss_pred             EEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEE
Confidence            88887664221  11111111122233  67777888764     368899998765332211110 0111111125667


Q ss_pred             EEEEEcCC-----cEEEEEee
Q 008467          548 IAACFANH-----TVCVLDFR  563 (564)
Q Consensus       548 la~~~~~~-----~v~v~~~~  563 (564)
                      ++.|..++     .+.+||..
T Consensus       255 ~v~GG~~~~~~~~~v~~yd~~  275 (302)
T 2xn4_A          255 YVVGGDDGSCNLASVEYYNPT  275 (302)
T ss_dssp             EEECCBCSSSBCCCEEEEETT
T ss_pred             EEECCcCCCcccccEEEEcCC
Confidence            77765443     47777753

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=94.83  E-value=2  Score=48.77  Aligned_cols=195  Identities=12%  Similarity=0.206  Sum_probs=118.7

Q ss_pred             eCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcC-CCceeeEecCCC---
Q 008467          324 WNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIG-ENRPIKTFAGHQ---  399 (564)
Q Consensus       324 ~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~~~~~~~~h~---  399 (564)
                      .+|..+.++-= ..+++.|+|+.+...+..+.+.. ++.=-.|.+...++.. ++..|+.|++. +..|++.|..|.   
T Consensus        73 MnP~~~iiALr-ag~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~~l~lV-T~~aVyHW~~~~~s~P~k~fdR~~~L~  149 (1630)
T 1xi4_A           73 MNPASKVIALK-AGKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALV-TDNAVYHWSMEGESQPVKMFDRHSSLA  149 (1630)
T ss_pred             cCCCcceEEEe-cCCeEEEeehHHhhhhcccccCC-CceEEEecCCCeeEEE-cCCeEEEeccCCCCccHHHHhcchhcc
Confidence            45655544433 36799999999888777766644 4555577777665543 45679999996 456888777773   


Q ss_pred             -cceEEEEECCCCCEEEEEe-------CCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeC-
Q 008467          400 -GEVNCVKWDPTGSLLASCS-------DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF-  470 (564)
Q Consensus       400 -~~i~~v~~~~~~~~las~s-------~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~-  470 (564)
                       ..|..-..+++.++++..+       -.|.+.+|+...+. .+.+.+|.+....+..  .|.    +....+++-+.. 
T Consensus       150 ~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~~~~--~~~----~~~~~l~~f~~~~  222 (1630)
T 1xi4_A          150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKM--EGN----AEESTLFCFAVRG  222 (1630)
T ss_pred             cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhheecc--CCC----CCCceEEEEEEec
Confidence             4566677788888876433       35778888865442 2345566654433332  221    111123333322 


Q ss_pred             --CCeEEEEeCCCC---eEEEE-------Ee--CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 008467          471 --DSTVKLWDVELG---KLLYS-------LN--GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK  528 (564)
Q Consensus       471 --dg~i~iwd~~~~---~~~~~-------~~--~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~  528 (564)
                        .+.++|.++...   ...+.       +.  .-.+-.-++..|+.-..+..-+.-|.|++||+.+|.++.
T Consensus       223 ~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~  294 (1630)
T 1xi4_A          223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY  294 (1630)
T ss_pred             CCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhh
Confidence              267888887532   11111       00  011223456667776777778889999999999998653

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=94.81  E-value=1.5  Score=41.04  Aligned_cols=217  Identities=6%  Similarity=-0.006  Sum_probs=104.5

Q ss_pred             EEEEeeC--CCcEEEEECCCcceeEEEeecccC-eEEEEcCCCceEEEEeCC----CeEEEEEcCCCce--eeEecCCCc
Q 008467          330 YLLTGSC--DKTAIVWDVKTEEWKQQFEFHSGP-TLDVDWRNNVSFATSSTD----NMIYVCKIGENRP--IKTFAGHQG  400 (564)
Q Consensus       330 ~l~s~s~--D~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d----~~i~~~~~~~~~~--~~~~~~h~~  400 (564)
                      .++.|+.  ...+.+||+.+.+|...-...... -..+...++..++.++.+    ..+++++..+..-  +..+.....
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~   93 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRD   93 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCB
T ss_pred             EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcccc
Confidence            3445554  357899999998876542211110 112222355566666644    5677788766532  111111111


Q ss_pred             ceEEEEECCCCCEEEEEeCC------CcEEEEeCCCCeeeee--cccccccEEEEEEccCCCCCCCCCCcEEEEEEeC--
Q 008467          401 EVNCVKWDPTGSLLASCSDD------VTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPTGSGTNNPNQQLILASASF--  470 (564)
Q Consensus       401 ~i~~v~~~~~~~~las~s~d------g~i~iwd~~~~~~~~~--~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~--  470 (564)
                      ...++.+  ++++++.|+.+      ..+.+||..+......  +.........+..  +        +. +++.|+.  
T Consensus        94 ~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~--------~~-iyv~GG~~~  160 (306)
T 3ii7_A           94 SLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--N--------GL-IYVCGGSLG  160 (306)
T ss_dssp             SCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--T--------TE-EEEECCEES
T ss_pred             ceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--C--------CE-EEEECCCCC
Confidence            1222333  57777777765      3578888877654321  1100000011111  1        12 3334432  


Q ss_pred             -------CCeEEEEeCCCCeEEE--EEeCCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCeEEEEEecC---
Q 008467          471 -------DSTVKLWDVELGKLLY--SLNGHREPVYSLAFSPTGEYLASGSLD-----KSMHIWSLKEGKIVKTYTGN---  533 (564)
Q Consensus       471 -------dg~i~iwd~~~~~~~~--~~~~h~~~i~~~~~spdg~~lasgs~d-----g~i~iw~~~~~~~~~~~~~~---  533 (564)
                             -..+.+||+.+.+=..  .+......-..+.+  ++++++.|+.+     ..+.+||..+.+-...-...   
T Consensus       161 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r  238 (306)
T 3ii7_A          161 NNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKG  238 (306)
T ss_dssp             CTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCB
T ss_pred             CCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCc
Confidence                   3458888988764221  11111111122223  66777777654     35889998876532211111   


Q ss_pred             CCEEEEEEccCCCEEEEEEcC-----CcEEEEEee
Q 008467          534 GGIFEVCWNKEGDKIAACFAN-----HTVCVLDFR  563 (564)
Q Consensus       534 ~~i~~~~w~~~g~~la~~~~~-----~~v~v~~~~  563 (564)
                      .....+..  +++.+++|..+     ..+.+||..
T Consensus       239 ~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~  271 (306)
T 3ii7_A          239 VTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTE  271 (306)
T ss_dssp             SCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETT
T ss_pred             cceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCC
Confidence            11122222  56677777543     356777753

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=94.69  E-value=1.5  Score=40.81  Aligned_cols=220  Identities=14%  Similarity=0.040  Sum_probs=109.5

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEECC--CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEE
Q 008467          277 DVTTLDWNGEGTLLATGSYDGQARIWSTN--GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF  354 (564)
Q Consensus       277 ~V~~l~~s~~g~~l~sg~~dg~i~vw~~~--~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  354 (564)
                      .|..++-.....++ . . ||.+..|-.+  +++-. .......|..++....  +.+.-. ||.|..|-..........
T Consensus        25 ~i~~ia~G~~h~~~-l-~-~G~v~~wG~n~~Gqlg~-p~~~~~~i~~ia~G~~--hs~~l~-~G~v~~wG~n~~Gqlg~P   97 (282)
T 3qhy_B           25 GVDAIAGGYFHGLA-L-K-GGKVLGWGANLNGQLTM-PAATQSGVDAIAAGNY--HSLALK-DGEVIAWGGNEDGQTTVP   97 (282)
T ss_dssp             SCCEEEECSSEEEE-E-E-TTEEEEEECCSSSTTSC-CGGGGSCCCEEEECSS--EEEEEE-TTEEEEEECCTTSTTCCC
T ss_pred             CCcEEEeCCCeEEE-E-E-CCEEEEEeCCCCCCCCC-CccCCCCEEEEEeCCC--EEEEEE-CCEEEEeeCCCCCCCCCC
Confidence            45666554433333 3 4 8999999754  22211 1112235666665443  222224 899999975432111100


Q ss_pred             eecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeee
Q 008467          355 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV  434 (564)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~  434 (564)
                      ......+..+..-....++..  ++.++.|-......+..-......|..++......+++  . ||.+..|-......+
T Consensus        98 ~~~~~~v~~ia~G~~hs~al~--~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l--~-~G~v~~wG~n~~gql  172 (282)
T 3qhy_B           98 AEARSGVDAIAAGAWASYALK--DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAV--K-NGGVIAWGDNYFGQT  172 (282)
T ss_dssp             GGGSSSEEEEEEETTEEEEEE--TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE--E-TTEEEEEECCTTSTT
T ss_pred             cccCCCeEEEECcCCEEEEEe--CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEE--E-CCEEEEecCCCCCCC
Confidence            111224555555455555554  89999997654322111111234577777654433332  3 799999976543222


Q ss_pred             eecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCC
Q 008467          435 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK  514 (564)
Q Consensus       435 ~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg  514 (564)
                      ..-......|..|+-...          ..++.  .||.|..|-....-.+..-......|..|+-.....+ |. . ||
T Consensus       173 g~p~~~~~~v~~i~~G~~----------hs~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~-al-~-~g  237 (282)
T 3qhy_B          173 TVPAEAQSGVDDVAGGIF----------HSLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSL-AL-K-NG  237 (282)
T ss_dssp             SCCGGGGSSEEEEEECSS----------EEEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEE-EE-E-TT
T ss_pred             CCceecCCCeEEEEecCC----------EEEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEE-EE-E-CC
Confidence            111111345666654332          23444  4899999965431111100111234666765544333 33 3 89


Q ss_pred             cEEEEeCCC
Q 008467          515 SMHIWSLKE  523 (564)
Q Consensus       515 ~i~iw~~~~  523 (564)
                      .|+.|=...
T Consensus       238 ~v~~wG~n~  246 (282)
T 3qhy_B          238 KVIAWGSSR  246 (282)
T ss_dssp             EEEEESTTC
T ss_pred             EEEEecCCC
Confidence            999997654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=94.52  E-value=0.56  Score=45.94  Aligned_cols=124  Identities=12%  Similarity=0.135  Sum_probs=76.0

Q ss_pred             ceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCC--CCCceEEEEEeeccccccCCCCeEEEEECCC---CCEEEE
Q 008467          218 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQ--NGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE---GTLLAT  292 (564)
Q Consensus       218 ~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~---g~~l~s  292 (564)
                      .|..+..||+|++||.. ++..|.|-.++.+.......  ..++.... .+..........+|..+.|+|-   +..|++
T Consensus        67 ~i~qlvlSpsG~lLAl~-g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~t-y~l~~~~~~~~s~I~qVlWHPl~~~ds~LVV  144 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLF-NDNEIFVMEVPWGYSNVEDVSIQDAFQIFH-YSIDEEEVGPKSSIKKVLFHPKSYRDSCIVV  144 (452)
T ss_dssp             TTCEEEECTTSSEEEEE-CSSEEEEEECCTTCSCCCCHHHHHTTEEEE-EEGGGCC--CCCCEEEEEECTTBGGGCEEEE
T ss_pred             ceeEEEECCCCCEEEEe-cCCeEEEEEecCccccCcccccccccceeE-EEcCCcccCCCCceeEEEeccccCCCCeEEE
Confidence            57789999999999987 46688888887543221100  01222111 1111111113578999999994   568999


Q ss_pred             EeCCCeEEEEECCCce--eEeec---------CCCCCEEEEEeCCCCCEEEE--eeCCCcEEEE
Q 008467          293 GSYDGQARIWSTNGDL--KCTLS---------KHKGPIFSLKWNKKGDYLLT--GSCDKTAIVW  343 (564)
Q Consensus       293 g~~dg~i~vw~~~~~~--~~~~~---------~h~~~V~~l~~~~~~~~l~s--~s~D~~v~iw  343 (564)
                      -..|+.||+||.....  ...+.         .....|.+++|.+++-.|..  .+..|-|.-.
T Consensus       145 LtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          145 LKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             EecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            9999999999976411  01222         22256888899887755555  3366666543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.52  E-value=1.1  Score=39.75  Aligned_cols=139  Identities=12%  Similarity=0.040  Sum_probs=77.7

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccE--------EEEEEccCCCCCCCCCCcEEEEEEeCCC
Q 008467          401 EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEI--------YTIRWSPTGSGTNNPNQQLILASASFDS  472 (564)
Q Consensus       401 ~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i--------~~i~~~p~~~~~~~~~~~~~l~s~s~dg  472 (564)
                      .+..++|+|+|.+.+.  .+|.+.-.+..+.... ........|        .++.|.|+|.         +.++  .||
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~-~W~~s~t~IG~~Gw~~F~a~~fD~~G~---------LYav--~dG  107 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDND-NWMGRAKKIGNGGWNQFQFLFFDPNGY---------LYAV--SKD  107 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTC-CHHHHCEEEECSCGGGCSEEEECTTSC---------EEEE--ETT
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCcc-cccccccEecccccccceEEEECCCCC---------EEEe--CCC
Confidence            5669999999998777  6666555554332111 111111222        5677777764         2333  569


Q ss_pred             eEEEEeCCC-CeEE-----EEE-eCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe------EEEEEe-cC-CCEE
Q 008467          473 TVKLWDVEL-GKLL-----YSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK------IVKTYT-GN-GGIF  537 (564)
Q Consensus       473 ~i~iwd~~~-~~~~-----~~~-~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~------~~~~~~-~~-~~i~  537 (564)
                      .|.-++.-+ +..-     ..+ ..--..+..|.|.|+|.+.|..  |+.++-+....+.      ....+- .. ....
T Consensus       108 ~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr  185 (236)
T 1tl2_A          108 KLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFK  185 (236)
T ss_dssp             EEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEE
T ss_pred             EEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEE
Confidence            998777532 1100     111 1112457999999999998877  7776444333211      011111 11 1234


Q ss_pred             EEEEccCCCEEEEEEcCCcE
Q 008467          538 EVCWNKEGDKIAACFANHTV  557 (564)
Q Consensus       538 ~~~w~~~g~~la~~~~~~~v  557 (564)
                      .+.|.++|...++.  ++.+
T Consensus       186 ~l~f~~~G~l~~v~--~g~~  203 (236)
T 1tl2_A          186 FLFFSSVGTLFGVQ--GGKF  203 (236)
T ss_dssp             EEEECTTSCEEEEE--TTEE
T ss_pred             EEEECCCCcEEEEe--CCeE
Confidence            57799999988887  6643

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=94.17  E-value=2.5  Score=39.66  Aligned_cols=224  Identities=13%  Similarity=0.128  Sum_probs=106.8

Q ss_pred             CCCCEEEEEeCC----CeEEEEECCCceeEeecCCCC---CEEEEEeCCCCCEEEEeeC----C-----CcEEEEECCCc
Q 008467          285 GEGTLLATGSYD----GQARIWSTNGDLKCTLSKHKG---PIFSLKWNKKGDYLLTGSC----D-----KTAIVWDVKTE  348 (564)
Q Consensus       285 ~~g~~l~sg~~d----g~i~vw~~~~~~~~~~~~h~~---~V~~l~~~~~~~~l~s~s~----D-----~~v~iwd~~~~  348 (564)
                      -++.+++.|+.+    ..+.++|.....-..+.....   .-..+..  ++..++.|+.    +     ..+.+||+.+.
T Consensus        23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~  100 (308)
T 1zgk_A           23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN  100 (308)
T ss_dssp             CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred             CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence            355677777642    367778866543332221111   1111222  4556666665    2     46889999988


Q ss_pred             ceeEEEeecccC-eEEEEcCCCceEEEEeCC-----CeEEEEEcCCCcee--eEecCCCcceEEEEECCCCCEEEEEeCC
Q 008467          349 EWKQQFEFHSGP-TLDVDWRNNVSFATSSTD-----NMIYVCKIGENRPI--KTFAGHQGEVNCVKWDPTGSLLASCSDD  420 (564)
Q Consensus       349 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d-----~~i~~~~~~~~~~~--~~~~~h~~~i~~v~~~~~~~~las~s~d  420 (564)
                      +|...-...... ...+...++..++.++.+     ..+.+++..+..-.  ..+......-.++.+  ++++++.|+.+
T Consensus       101 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~  178 (308)
T 1zgk_A          101 QWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFD  178 (308)
T ss_dssp             EEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred             eEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCC
Confidence            876543221110 111222245555655432     34677777654311  111111111222333  56777777654


Q ss_pred             -----CcEEEEeCCCCeeeee--cccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC-----CeEEEEeCCCCeEEE--
Q 008467          421 -----VTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-----STVKLWDVELGKLLY--  486 (564)
Q Consensus       421 -----g~i~iwd~~~~~~~~~--~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~--  486 (564)
                           ..+.+||..+......  +.........+.+  +        + .+++.|+.+     ..+.+||+.+.+=..  
T Consensus       179 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~--------~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~  247 (308)
T 1zgk_A          179 GTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--H--------N-CIYAAGGYDGQDQLNSVERYDVETETWTFVA  247 (308)
T ss_dssp             SSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--T--------T-EEEEECCBCSSSBCCCEEEEETTTTEEEECC
T ss_pred             CCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--C--------C-EEEEEeCCCCCCccceEEEEeCCCCcEEECC
Confidence                 3578888876654321  1110000111111  1        1 244555543     468889988664221  


Q ss_pred             EEeCCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCe
Q 008467          487 SLNGHREPVYSLAFSPTGEYLASGSLD-----KSMHIWSLKEGK  525 (564)
Q Consensus       487 ~~~~h~~~i~~~~~spdg~~lasgs~d-----g~i~iw~~~~~~  525 (564)
                      .+.........+.+  ++++++.|+.+     ..|.+||..+.+
T Consensus       248 ~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          248 PMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             CCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence            11111111122222  56777777754     357788887654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=93.91  E-value=3.2  Score=38.98  Aligned_cols=178  Identities=8%  Similarity=0.067  Sum_probs=86.2

Q ss_pred             EEEeeCCCcEEEEECCCcceeEEEeec---ccCeEEEEcCCCceEEEEeC-----C------CeEEEEEcCCCce--eeE
Q 008467          331 LLTGSCDKTAIVWDVKTEEWKQQFEFH---SGPTLDVDWRNNVSFATSST-----D------NMIYVCKIGENRP--IKT  394 (564)
Q Consensus       331 l~s~s~D~~v~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-----d------~~i~~~~~~~~~~--~~~  394 (564)
                      ++.|+  ..+.+||+.+++|.. ....   ......+...++..++.++.     .      ..++.++..+.+-  +..
T Consensus         8 ~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   84 (315)
T 4asc_A            8 FMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP   84 (315)
T ss_dssp             EEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred             EEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence            34454  579999999998865 2221   11123344456666666652     1      1266677665431  111


Q ss_pred             ecCCCcceEEEEECCCCCEEEEEeCC--------CcEEEEeCCCCeeee--ecccccccEEEEEEccCCCCCCCCCCcEE
Q 008467          395 FAGHQGEVNCVKWDPTGSLLASCSDD--------VTAKIWNMKQDKYVH--DLREHSKEIYTIRWSPTGSGTNNPNQQLI  464 (564)
Q Consensus       395 ~~~h~~~i~~v~~~~~~~~las~s~d--------g~i~iwd~~~~~~~~--~~~~~~~~i~~i~~~p~~~~~~~~~~~~~  464 (564)
                      +.........+.+  ++++++.|+.+        ..+.+||..+.+...  .+.........+..  .        +. +
T Consensus        85 ~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~--------~~-i  151 (315)
T 4asc_A           85 LPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSH--M--------DL-V  151 (315)
T ss_dssp             BSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--T--------TE-E
T ss_pred             CCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEE--C--------CE-E
Confidence            1111111122222  56777777632        357888887664322  11110000011111  1        12 4


Q ss_pred             EEEEeC-C-----CeEEEEeCCCCeEEE--EEeCCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCeE
Q 008467          465 LASASF-D-----STVKLWDVELGKLLY--SLNGHREPVYSLAFSPTGEYLASGSLDK-----SMHIWSLKEGKI  526 (564)
Q Consensus       465 l~s~s~-d-----g~i~iwd~~~~~~~~--~~~~h~~~i~~~~~spdg~~lasgs~dg-----~i~iw~~~~~~~  526 (564)
                      ++.|+. +     ..+.+||+.+.+=..  .+...+..-..+.+  +++.++.|+.++     .+.+||..+.+-
T Consensus       152 yv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W  224 (315)
T 4asc_A          152 YVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKW  224 (315)
T ss_dssp             EEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEE
T ss_pred             EEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeE
Confidence            444544 2     368888887654211  11111111122223  677788887654     588999887653

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.54  E-value=6.7  Score=39.21  Aligned_cols=102  Identities=10%  Similarity=0.157  Sum_probs=58.1

Q ss_pred             CEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEee--------cccCeEEEEcCC-----CceEEEEeC-------
Q 008467          318 PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF--------HSGPTLDVDWRN-----NVSFATSST-------  377 (564)
Q Consensus       318 ~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~--------~~~~~~~~~~~~-----~~~~~~~~~-------  377 (564)
                      ..++|+|.|+|+.+++-...+.|++++..++........        .....+.+.+.+     ...+++.+.       
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~  107 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD  107 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence            457899999998666654445788887655543322211        123355777763     344454432       


Q ss_pred             -----CCeEEEEEcCCC-------ceee-Eec-CCCcceEEEEECCCCCEEEEEeC
Q 008467          378 -----DNMIYVCKIGEN-------RPIK-TFA-GHQGEVNCVKWDPTGSLLASCSD  419 (564)
Q Consensus       378 -----d~~i~~~~~~~~-------~~~~-~~~-~h~~~i~~v~~~~~~~~las~s~  419 (564)
                           ...|..++....       +.+. .+. +.......|+|.|||.+.++.++
T Consensus       108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                 235555554321       1111 122 12234688999999998887654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=93.41  E-value=5.2  Score=37.56  Aligned_cols=107  Identities=10%  Similarity=0.128  Sum_probs=53.1

Q ss_pred             CCCCCEEEEeeC----CC-------cEEEEECCCcceeEEEeeccc-CeEEEEcCCCceEEEEeCC-------CeEEEEE
Q 008467          325 NKKGDYLLTGSC----DK-------TAIVWDVKTEEWKQQFEFHSG-PTLDVDWRNNVSFATSSTD-------NMIYVCK  385 (564)
Q Consensus       325 ~~~~~~l~s~s~----D~-------~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d-------~~i~~~~  385 (564)
                      ..++..++.|+.    ++       .+.+||+.+.+|...-..... ....+...++..++.++.+       ..+++++
T Consensus        54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd  133 (318)
T 2woz_A           54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYD  133 (318)
T ss_dssp             CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEE
T ss_pred             EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEe
Confidence            345667777763    12       177889988887653221111 1112222355566666543       2466777


Q ss_pred             cCCCceee--EecCCCcceEEEEECCCCCEEEEEeC------CCcEEEEeCCCCee
Q 008467          386 IGENRPIK--TFAGHQGEVNCVKWDPTGSLLASCSD------DVTAKIWNMKQDKY  433 (564)
Q Consensus       386 ~~~~~~~~--~~~~h~~~i~~v~~~~~~~~las~s~------dg~i~iwd~~~~~~  433 (564)
                      ..+.+=..  .+......-.++.  .++++++.|+.      -..+.+||..+...
T Consensus       134 ~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W  187 (318)
T 2woz_A          134 PVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW  187 (318)
T ss_dssp             TTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTEE
T ss_pred             CCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCEE
Confidence            66543111  1111111111222  35677777764      23588889877654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=93.33  E-value=13  Score=41.98  Aligned_cols=272  Identities=11%  Similarity=0.102  Sum_probs=139.8

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEECC-CceeEe-ecCCCCCEEEEEeCCC------CCEEEEeeC-CCcEEEEECC
Q 008467          276 KDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCT-LSKHKGPIFSLKWNKK------GDYLLTGSC-DKTAIVWDVK  346 (564)
Q Consensus       276 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~-~~~h~~~V~~l~~~~~------~~~l~s~s~-D~~v~iwd~~  346 (564)
                      ..|...+.+.  .+++.++ .+.+.++..+ +.+... -..-...|.|+++.|.      +.+++.|.+ |++++|+++.
T Consensus       514 ~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~  590 (1158)
T 3ei3_A          514 KNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLP  590 (1158)
T ss_dssp             CCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETT
T ss_pred             CEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECC
Confidence            4466665543  4566665 5777777654 322211 1123568999998764      368899987 9999999998


Q ss_pred             CcceeEEEeecc-cC---eEEEEcCCCceEEEEeCCCeEEEEEcCC--Ccee---eEecCCCcceEEEEECCCCCEEEEE
Q 008467          347 TEEWKQQFEFHS-GP---TLDVDWRNNVSFATSSTDNMIYVCKIGE--NRPI---KTFAGHQGEVNCVKWDPTGSLLASC  417 (564)
Q Consensus       347 ~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~d~~i~~~~~~~--~~~~---~~~~~h~~~i~~v~~~~~~~~las~  417 (564)
                      +.+.+....... ..   +.-+.+.....+..+-.||.+..+.++.  +...   ..+-| ..++.-..+...+..-+-+
T Consensus       591 ~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a  669 (1158)
T 3ei3_A          591 SFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFA  669 (1158)
T ss_dssp             TCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEE
T ss_pred             CCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEE
Confidence            766554333321 11   2222232334456677788876666543  2221   12333 2344333343333332222


Q ss_pred             eCCCcEEEEeCCCCeeeeecccccccE-EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe--EEEEEeCCCCC
Q 008467          418 SDDVTAKIWNMKQDKYVHDLREHSKEI-YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK--LLYSLNGHREP  494 (564)
Q Consensus       418 s~dg~i~iwd~~~~~~~~~~~~~~~~i-~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~h~~~  494 (564)
                      ..+....++..+..-....+..  ..+ ....|+...    .|+   -++. ..++.++|..+..-.  .+.++. -...
T Consensus       670 ~s~rp~liy~~~~~l~~s~l~~--~~v~~~~~F~se~----~~~---g~v~-~~~~~LrI~~i~~~~~~~~~~ip-L~~T  738 (1158)
T 3ei3_A          670 CSDRPTVIYSSNHKLVFSNVNL--KEVNYMCPLNSDG----YPD---SLAL-ANNSTLTIGTIDEIQKLHIRTVP-LYES  738 (1158)
T ss_dssp             ESSSCEEEEESSSSEEEEEBSS--SCCCEEEEECCSS----STT---EEEE-ECSSCEEEEEECCSSSEEEEEEE-CSSE
T ss_pred             ECCCCEEEEEcCCceEEeccCh--HHhceEeccCccc----CCC---cEEE-EcCCceEEEEecccCCeeEEEEe-CCCC
Confidence            3344444554332211111111  122 222333211    121   1332 335669988765322  223332 2345


Q ss_pred             EEEEEEcCCCCEEEEEeCC-------------------------------------------------CcEEEEeCCCCe
Q 008467          495 VYSLAFSPTGEYLASGSLD-------------------------------------------------KSMHIWSLKEGK  525 (564)
Q Consensus       495 i~~~~~spdg~~lasgs~d-------------------------------------------------g~i~iw~~~~~~  525 (564)
                      +..++++|+.+.++.+..+                                                 +.|++.|..+++
T Consensus       739 prri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~  818 (1158)
T 3ei3_A          739 PRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFE  818 (1158)
T ss_dssp             EEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCC
T ss_pred             ceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCe
Confidence            6788888877665443211                                                 247777877777


Q ss_pred             EEEEEec--CCCEEEEE---EccC-CCEEEEEE----------cCCcEEEEEe
Q 008467          526 IVKTYTG--NGGIFEVC---WNKE-GDKIAACF----------ANHTVCVLDF  562 (564)
Q Consensus       526 ~~~~~~~--~~~i~~~~---w~~~-g~~la~~~----------~~~~v~v~~~  562 (564)
                      .+..+.-  +..+.+++   +..+ ..+|++|.          ..|.+.||++
T Consensus       819 ~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v  871 (1158)
T 3ei3_A          819 VLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQY  871 (1158)
T ss_dssp             EEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEE
T ss_pred             EEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEE
Confidence            7766643  33344433   4433 36888886          3467888876

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=93.19  E-value=3.1  Score=36.81  Aligned_cols=100  Identities=14%  Similarity=0.088  Sum_probs=56.0

Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeee------c-ccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeE
Q 008467          402 VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD------L-REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTV  474 (564)
Q Consensus       402 i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~------~-~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i  474 (564)
                      ..++.|+|+|.+.++  .||.|.-++-.+...-.-      + ..-=..+..|.+.|+|.          |.... |+.+
T Consensus        90 F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~----------Lyav~-dg~l  156 (236)
T 1tl2_A           90 FQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY----------LYAVH-GQQF  156 (236)
T ss_dssp             CSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC----------EEEEE-TTEE
T ss_pred             ceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCce----------EEEEe-CCcE
Confidence            467899999999887  458887777532111100      0 00114578899999884          44445 7875


Q ss_pred             EEEeCCCCe------EEEEEe-CCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 008467          475 KLWDVELGK------LLYSLN-GHREPVYSLAFSPTGEYLASGSLDKSM  516 (564)
Q Consensus       475 ~iwd~~~~~------~~~~~~-~h~~~i~~~~~spdg~~lasgs~dg~i  516 (564)
                      +-+..-++.      ....+. ..-..-.-+.|+|+|...++.  +|.+
T Consensus       157 yr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~  203 (236)
T 1tl2_A          157 YKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF  203 (236)
T ss_dssp             EEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred             EecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence            433322111      011111 222233446799999887765  6644

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=93.13  E-value=11  Score=40.47  Aligned_cols=312  Identities=11%  Similarity=0.094  Sum_probs=163.7

Q ss_pred             cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC
Q 008467          217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD  296 (564)
Q Consensus       217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d  296 (564)
                      ..|.++.-.++|.+.+ |+..| +..++..++...           .. ............|.++...+++..|..|+. 
T Consensus       146 ~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~-----------~~-~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-  210 (758)
T 3ott_A          146 NTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNGKFE-----------GI-PLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-  210 (758)
T ss_dssp             SCEEEEEECTTCCEEE-EETTE-EEEEETTTTEEE-----------EE-CCCCCTTCSSCCEEEEEEETTTTEEEEEEE-
T ss_pred             CeEEEEEEcCCCCEEE-EeCCC-HhhCccCCCceE-----------Ee-cCCCccccccceeEEEEEECCCCEEEEEEC-
Confidence            4578888888888665 34444 556665433210           00 000000111235888888877765555554 


Q ss_pred             CeEEEEECCCceeEeec-CCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEee-------cccCeEEEEcCC
Q 008467          297 GQARIWSTNGDLKCTLS-KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF-------HSGPTLDVDWRN  368 (564)
Q Consensus       297 g~i~vw~~~~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~  368 (564)
                      +-+..++........+. .....|.++.-.++|...+ |+. +-+.+++..++.+......       ....+.++.-..
T Consensus       211 ~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~  288 (758)
T 3ott_A          211 GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQ  288 (758)
T ss_dssp             EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECT
T ss_pred             CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcC
Confidence            45777776544322221 1234588888777776554 443 4588888877654332111       112244443333


Q ss_pred             CceEEEEeCCCeEEEEEcCCCceeeEec-------CCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCe--eeeecc-
Q 008467          369 NVSFATSSTDNMIYVCKIGENRPIKTFA-------GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK--YVHDLR-  438 (564)
Q Consensus       369 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~-------~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~--~~~~~~-  438 (564)
                      +..+-.++..| +.+....  .....+.       .....|.++.-..+|.+-+ |+.+| +..++..++.  ....+. 
T Consensus       289 ~g~lWiGT~~G-l~~~~~~--~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~G-l~~~~~~~~~~~~~~~~~~  363 (758)
T 3ott_A          289 EHNIWLGTDYG-ISLSRYN--SALQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGANG-LIRFTDPAGERHDAIWYRM  363 (758)
T ss_dssp             TCCEEEEESSS-EEEECCC--C-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETTE-EEEESCTTSSCCCCEEECT
T ss_pred             CCCEEEEeCCc-ccccccC--CceeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCCc-ceeecccccccceeEEecc
Confidence            33333333344 3333221  1111111       1124688888888888754 45555 5556654321  111111 


Q ss_pred             ------cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEE-eC-----CCCCEEEEEEcCCCCE
Q 008467          439 ------EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-NG-----HREPVYSLAFSPTGEY  506 (564)
Q Consensus       439 ------~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~-----h~~~i~~~~~spdg~~  506 (564)
                            .....|.++.-..++.        +++  |+ ++-+..+|..+++...-. ..     ....|.++...++|.+
T Consensus       364 ~~~~~~l~~~~v~~i~~d~~g~--------lWi--gt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~l  432 (758)
T 3ott_A          364 GDKTYPLSHNRIRHIYEDKEQQ--------LWI--AT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQL  432 (758)
T ss_dssp             TCSSSCCSCSCEEEEEECTTSC--------EEE--EE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEE
T ss_pred             CCcCCCCCCCceEEEEECCCCC--------EEE--Ee-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCE
Confidence                  0123477776655443        344  44 456899999877654321 11     1245889988888876


Q ss_pred             EEEEeCCCcEEEEeCCC------CeEE--EEEec-----CCCEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467          507 LASGSLDKSMHIWSLKE------GKIV--KTYTG-----NGGIFEVCWNKEGDKIAACFANHTVCVLDF  562 (564)
Q Consensus       507 lasgs~dg~i~iw~~~~------~~~~--~~~~~-----~~~i~~~~w~~~g~~la~~~~~~~v~v~~~  562 (564)
                      .+ |+..+-|.+++..+      +...  ..+..     ...|.++.-+++|+.-++++.++.+..+|.
T Consensus       433 Wi-gT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~  500 (758)
T 3ott_A          433 WI-STCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINP  500 (758)
T ss_dssp             EE-EESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEET
T ss_pred             EE-EECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeC
Confidence            55 55554588888542      1221  23321     124889999999987663333445777664

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=92.17  E-value=3.7  Score=39.32  Aligned_cols=91  Identities=13%  Similarity=0.117  Sum_probs=45.7

Q ss_pred             CCCEEEEEeCC-CeEEEEECCC--ceeEeecCC----CCCEEEEEeCCCCCEEEEeeC-C---------CcEEEEECCCc
Q 008467          286 EGTLLATGSYD-GQARIWSTNG--DLKCTLSKH----KGPIFSLKWNKKGDYLLTGSC-D---------KTAIVWDVKTE  348 (564)
Q Consensus       286 ~g~~l~sg~~d-g~i~vw~~~~--~~~~~~~~h----~~~V~~l~~~~~~~~l~s~s~-D---------~~v~iwd~~~~  348 (564)
                      ++.+++.|+.+ ..+.++|...  ..-..+..-    ...-.++.+  ++..++.|+. +         ..+.+||+.+.
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~   96 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN   96 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence            56666777654 4677778652  211222111    111112222  4556666665 2         46889999998


Q ss_pred             ceeEEEeec-cc-CeEEEEcCCCceEEEEeCC
Q 008467          349 EWKQQFEFH-SG-PTLDVDWRNNVSFATSSTD  378 (564)
Q Consensus       349 ~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~d  378 (564)
                      +|...-... .. ....+...++..++.++.+
T Consensus        97 ~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~  128 (357)
T 2uvk_A           97 SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVN  128 (357)
T ss_dssp             EEEECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred             cEEECCCCCCcccccceEEEECCEEEEEeCcC
Confidence            877643322 11 1111222455666666643

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=91.79  E-value=6.9  Score=44.60  Aligned_cols=233  Identities=12%  Similarity=0.148  Sum_probs=117.7

Q ss_pred             ECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCc-ceeEEEeecc---
Q 008467          283 WNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE-EWKQQFEFHS---  358 (564)
Q Consensus       283 ~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~---  358 (564)
                      .+|..+.+|.-. ..++.|++.+.+.+..-.....+|.--+|-.....-+..  +..|.-|++... ...+.|..|.   
T Consensus        73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lVT--~~aVyHW~~~~~s~P~k~fdR~~~L~  149 (1630)
T 1xi4_A           73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVT--DNAVYHWSMEGESQPVKMFDRHSSLA  149 (1630)
T ss_pred             cCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEEc--CCeEEEeccCCCCccHHHHhcchhcc
Confidence            455556665554 578999998755433222334578888887655442222  468999998642 2223333332   


Q ss_pred             -cCeEEEEcCCCc--eEEEE------eCCCeEEEEEcCCCceeeEecCCCcceEEEEEC--CC-CCEEEEEeC---CCcE
Q 008467          359 -GPTLDVDWRNNV--SFATS------STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWD--PT-GSLLASCSD---DVTA  423 (564)
Q Consensus       359 -~~~~~~~~~~~~--~~~~~------~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~--~~-~~~las~s~---dg~i  423 (564)
                       ..++......+.  ..++|      ...|.+.++.+..+ ..+.+.||.+....+...  +. .++++-+..   .+.+
T Consensus       150 ~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kL  228 (1630)
T 1xi4_A          150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKL  228 (1630)
T ss_pred             cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceE
Confidence             223222222221  11221      13456667766443 234566776655444332  11 223332222   2678


Q ss_pred             EEEeCCCC-eeeeecccccccEEEEEEccCCCCCC------CCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEE
Q 008467          424 KIWNMKQD-KYVHDLREHSKEIYTIRWSPTGSGTN------NPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVY  496 (564)
Q Consensus       424 ~iwd~~~~-~~~~~~~~~~~~i~~i~~~p~~~~~~------~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~  496 (564)
                      +|-++... .-.   .........+-|.|+....+      ++.. -++..-+.-|.|.++|+.+|.+++.-+-...+|.
T Consensus       229 hi~Ei~~~~~~~---~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~-g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF  304 (1630)
T 1xi4_A          229 HIIEVGTPPTGN---QPFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGTCIYMNRISGETIF  304 (1630)
T ss_pred             EEEecCCCccCC---CCCccccccccCCcccccCcceEEEecccc-CEEEEEecCceEEEEecccchhhhhccccCCceE
Confidence            88776432 000   11122234444544322111      1111 1344556779999999999999877665556666


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 008467          497 SLAFSPTGEYLASGSLDKSMHIWSLKE  523 (564)
Q Consensus       497 ~~~~spdg~~lasgs~dg~i~iw~~~~  523 (564)
                      ..+.++...-++.....|.|.--.+..
T Consensus       305 ~~~~~~~~~g~~~vnr~G~vl~v~v~~  331 (1630)
T 1xi4_A          305 VTAPHEATAGIIGVNRKGQVLSVCVEE  331 (1630)
T ss_pred             EeccCCCCCceEEEcCCceEEEEEEcc
Confidence            655544433333344555554444443

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=91.66  E-value=16  Score=39.08  Aligned_cols=266  Identities=9%  Similarity=0.060  Sum_probs=145.8

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeec--C----CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCc
Q 008467          275 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLS--K----HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE  348 (564)
Q Consensus       275 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~--~----h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~  348 (564)
                      ...|.++....+|.+.+ |+.. -+..++........+.  .    ....|.++...+++..|..|+. +-+..+|..++
T Consensus       145 ~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~  221 (758)
T 3ott_A          145 NNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTG  221 (758)
T ss_dssp             CSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTT
T ss_pred             CCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCC
Confidence            35688888888888765 4444 4667776544332221  1    1234888887777765555553 45888998877


Q ss_pred             ceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecC--------CCcceEEEEECCCCCEEEEEeCC
Q 008467          349 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG--------HQGEVNCVKWDPTGSLLASCSDD  420 (564)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~--------h~~~i~~v~~~~~~~~las~s~d  420 (564)
                      .+..........+.++.-..+..+..++. +-+++++...... ..+..        ....|.++..+.+|.+- .|+..
T Consensus       222 ~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~Gl~~~~~~~~~~-~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-iGT~~  298 (758)
T 3ott_A          222 QIKQTEAFHNNSIKSLALDGNGDLLAGTD-NGLYVYHNDTTPL-QHIIHDSRNIQSLTNNIIWNIFADQEHNIW-LGTDY  298 (758)
T ss_dssp             EEEEEEEEEEEEEEEEEECTTCCEEEEET-TEEEEECCTTSCC-EEECCCTTCTTSCSCSCEEEEEECTTCCEE-EEESS
T ss_pred             eEEeccCCCCCeEEEEEEcCCCCEEEEeC-CceeEEecCCCcE-EEEEcCCCCcCcCCcCeEEEEEEcCCCCEE-EEeCC
Confidence            65432222223344554444444444443 4567776654332 22211        12458899888888764 45555


Q ss_pred             CcEEEEeCCCCeeeeecc-----cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe--EEEEEeC---
Q 008467          421 VTAKIWNMKQDKYVHDLR-----EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK--LLYSLNG---  490 (564)
Q Consensus       421 g~i~iwd~~~~~~~~~~~-----~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~---  490 (564)
                      | +.++............     .....|.++.-...|.        +++  |+.+| +..++..+++  ....+..   
T Consensus       299 G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~--------lWi--Gt~~G-l~~~~~~~~~~~~~~~~~~~~~  366 (758)
T 3ott_A          299 G-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGF--------YWF--GGANG-LIRFTDPAGERHDAIWYRMGDK  366 (758)
T ss_dssp             S-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCC--------EEE--EETTE-EEEESCTTSSCCCCEEECTTCS
T ss_pred             c-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCC--------EEE--eeCCc-ceeecccccccceeEEeccCCc
Confidence            6 5444322111111110     1123577777655543        343  44455 5566655431  1111210   


Q ss_pred             ----CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe-------cCCCEEEEEEccCCCEEEEEEcCCcEEE
Q 008467          491 ----HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT-------GNGGIFEVCWNKEGDKIAACFANHTVCV  559 (564)
Q Consensus       491 ----h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~-------~~~~i~~~~w~~~g~~la~~~~~~~v~v  559 (564)
                          ....|.++.-.++|++.+ |+. +-|..|+..+++...-..       ....|.++.-+++|+..+ |..++.+.+
T Consensus       367 ~~~l~~~~v~~i~~d~~g~lWi-gt~-~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gT~~~Gl~~  443 (758)
T 3ott_A          367 TYPLSHNRIRHIYEDKEQQLWI-ATD-GSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWI-STCLGGIFV  443 (758)
T ss_dssp             SSCCSCSCEEEEEECTTSCEEE-EET-TEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEE-EESSSCEEE
T ss_pred             CCCCCCCceEEEEECCCCCEEE-EeC-CcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEE-EECCCceEE
Confidence                123589999888887655 333 459999998876543221       123478888888886555 444445666


Q ss_pred             EE
Q 008467          560 LD  561 (564)
Q Consensus       560 ~~  561 (564)
                      +|
T Consensus       444 ~~  445 (758)
T 3ott_A          444 VD  445 (758)
T ss_dssp             EE
T ss_pred             Ec
Confidence            65

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=91.61  E-value=8.9  Score=35.91  Aligned_cols=171  Identities=10%  Similarity=0.107  Sum_probs=81.4

Q ss_pred             cEEEEECCCcceeEEEeec---ccCeEEEEcCCCceEEEEeC----CC-------eEEEEEcCCCcee--eEecCCCcce
Q 008467          339 TAIVWDVKTEEWKQQFEFH---SGPTLDVDWRNNVSFATSST----DN-------MIYVCKIGENRPI--KTFAGHQGEV  402 (564)
Q Consensus       339 ~v~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----d~-------~i~~~~~~~~~~~--~~~~~h~~~i  402 (564)
                      .+.+||+.+.+|... ...   ......+...++..++.++.    ++       .+++++..+..=.  ..+.......
T Consensus        25 ~~~~yd~~~~~W~~~-~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~  103 (318)
T 2woz_A           25 AAVAYDPMENECYLT-ALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF  103 (318)
T ss_dssp             EEEEEETTTTEEEEE-EECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC
T ss_pred             ceEEECCCCCceecc-cCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc
Confidence            478899998888662 221   11123344456666666662    11       1666776554311  1111111112


Q ss_pred             EEEEECCCCCEEEEEeCC-------CcEEEEeCCCCeeeeecccccccE--EEEEEccCCCCCCCCCCcEEEEEEeC---
Q 008467          403 NCVKWDPTGSLLASCSDD-------VTAKIWNMKQDKYVHDLREHSKEI--YTIRWSPTGSGTNNPNQQLILASASF---  470 (564)
Q Consensus       403 ~~v~~~~~~~~las~s~d-------g~i~iwd~~~~~~~~~~~~~~~~i--~~i~~~p~~~~~~~~~~~~~l~s~s~---  470 (564)
                      ..+.+  ++++++.|+.+       ..+.+||..+.+....- ....+.  .++.. .+        +. +++.|+.   
T Consensus       104 ~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r~~~~~~~-~~--------~~-iyv~GG~~~~  170 (318)
T 2woz_A          104 GLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK-NLPIKVYGHNVIS-HN--------GM-IYCLGGKTDD  170 (318)
T ss_dssp             EEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC-CCSSCEESCEEEE-ET--------TE-EEEECCEESS
T ss_pred             ceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECC-CCCCcccccEEEE-EC--------CE-EEEEcCCCCC
Confidence            22223  56777777754       24677888766543211 000000  01111 11        12 3344442   


Q ss_pred             ---CCeEEEEeCCCCeEEE--EEeCCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCe
Q 008467          471 ---DSTVKLWDVELGKLLY--SLNGHREPVYSLAFSPTGEYLASGSLD-----KSMHIWSLKEGK  525 (564)
Q Consensus       471 ---dg~i~iwd~~~~~~~~--~~~~h~~~i~~~~~spdg~~lasgs~d-----g~i~iw~~~~~~  525 (564)
                         -..+.+||+.+.+=..  .+.........+.+  +++.++.|+.+     ..+.+||..+.+
T Consensus       171 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  233 (318)
T 2woz_A          171 KKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNK  233 (318)
T ss_dssp             SCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred             CCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCe
Confidence               2358889988764221  11111111122233  66777777654     357789988764

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=91.10  E-value=6  Score=36.94  Aligned_cols=210  Identities=10%  Similarity=0.087  Sum_probs=97.4

Q ss_pred             CcEEEEECCCcceeEEEeecccC-eEEEEcCCCceEEEEeC----C-----CeEEEEEcCCCce--eeEecCCCcceEEE
Q 008467          338 KTAIVWDVKTEEWKQQFEFHSGP-TLDVDWRNNVSFATSST----D-----NMIYVCKIGENRP--IKTFAGHQGEVNCV  405 (564)
Q Consensus       338 ~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----d-----~~i~~~~~~~~~~--~~~~~~h~~~i~~v  405 (564)
                      ..+.++|+.+.+|...-...... ...+...++..++.++.    +     +.+++++..+..-  +..+........++
T Consensus        39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~  118 (308)
T 1zgk_A           39 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVG  118 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEE
T ss_pred             ceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEE
Confidence            35788888887776532111110 11222234555555554    2     3467777765431  11111111122223


Q ss_pred             EECCCCCEEEEEeCC-----CcEEEEeCCCCeeeee--cccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC-----Ce
Q 008467          406 KWDPTGSLLASCSDD-----VTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-----ST  473 (564)
Q Consensus       406 ~~~~~~~~las~s~d-----g~i~iwd~~~~~~~~~--~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d-----g~  473 (564)
                      .+  ++++++.|+.+     ..+.+||..+......  +.........+.+  +        + .+++.|+.+     ..
T Consensus       119 ~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~--------~-~iyv~GG~~~~~~~~~  185 (308)
T 1zgk_A          119 VI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--N--------R-LLYAVGGFDGTNRLNS  185 (308)
T ss_dssp             EE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--T--------T-EEEEECCBCSSCBCCC
T ss_pred             EE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--C--------C-EEEEEeCCCCCCcCce
Confidence            33  56777777643     3577888876653321  1110000111111  1        1 244445443     45


Q ss_pred             EEEEeCCCCeEEE--EEeCCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCeEEEEEecCC-C-EEEEEEccC
Q 008467          474 VKLWDVELGKLLY--SLNGHREPVYSLAFSPTGEYLASGSLD-----KSMHIWSLKEGKIVKTYTGNG-G-IFEVCWNKE  544 (564)
Q Consensus       474 i~iwd~~~~~~~~--~~~~h~~~i~~~~~spdg~~lasgs~d-----g~i~iw~~~~~~~~~~~~~~~-~-i~~~~w~~~  544 (564)
                      +.+||+.+.+=..  .+.........+.+  ++++++.|+.+     ..+.+||+.+.+-...-.... . -..++. -+
T Consensus       186 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~  262 (308)
T 1zgk_A          186 AECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQ  262 (308)
T ss_dssp             EEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ET
T ss_pred             EEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE-EC
Confidence            8888887654221  11111111222333  67777777764     468999998765322111111 0 011111 25


Q ss_pred             CCEEEEEEcC-----CcEEEEEee
Q 008467          545 GDKIAACFAN-----HTVCVLDFR  563 (564)
Q Consensus       545 g~~la~~~~~-----~~v~v~~~~  563 (564)
                      ++.++.|..+     ..+.+||..
T Consensus       263 ~~i~v~GG~~~~~~~~~v~~yd~~  286 (308)
T 1zgk_A          263 GRIYVLGGYDGHTFLDSVECYDPD  286 (308)
T ss_dssp             TEEEEECCBCSSCBCCEEEEEETT
T ss_pred             CEEEEEcCcCCCcccceEEEEcCC
Confidence            6666776543     346677653

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=90.84  E-value=0.43  Score=48.25  Aligned_cols=90  Identities=13%  Similarity=0.191  Sum_probs=62.3

Q ss_pred             eEEEEeCCC----CeE-EEEEeCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCC------CeE-------EEEEecC
Q 008467          473 TVKLWDVEL----GKL-LYSLNGHREPVYSLAFSPTGEYLASGS-LDKSMHIWSLKE------GKI-------VKTYTGN  533 (564)
Q Consensus       473 ~i~iwd~~~----~~~-~~~~~~h~~~i~~~~~spdg~~lasgs-~dg~i~iw~~~~------~~~-------~~~~~~~  533 (564)
                      .|.+.|.+.    +.. ++.+. -......+..+|||++++.++ .+.+|.++++.+      +++       +......
T Consensus       299 gv~ViD~~~~~~~~~~~~~~iP-~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G  377 (638)
T 3sbq_A          299 KTPVLDGRKKDGKDSKFTRYVP-VPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG  377 (638)
T ss_dssp             CCCEEECSCBTTBCCSSEEEEE-ESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC
T ss_pred             CeeEEccccccccCCceEEEEe-CCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC
Confidence            467777765    322 22222 223346788999999987665 578999999874      222       3333334


Q ss_pred             CCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          534 GGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       534 ~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      -+....+|+++|+...+.+.|..|+-||+.
T Consensus       378 lGPlHt~Fd~~G~aYTtlfidSqvvkWni~  407 (638)
T 3sbq_A          378 LGPLHTTFDGRGNAYTTLFIDSQVVKWNME  407 (638)
T ss_dssp             SCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred             CcccEEEECCCCceEeeeeecceEEEEecc
Confidence            467899999999777777899999999874

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=89.91  E-value=14  Score=35.28  Aligned_cols=225  Identities=16%  Similarity=0.156  Sum_probs=113.3

Q ss_pred             CCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEe------ecccCeEEEEcCC-----CceEEEE--eCCCeEEE
Q 008467          317 GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE------FHSGPTLDVDWRN-----NVSFATS--STDNMIYV  383 (564)
Q Consensus       317 ~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~--~~d~~i~~  383 (564)
                      ...++|+|.|+|..+++--..|.|++++..++.......      ......+.+.+.+     ...+++-  ..++.|..
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R  111 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR  111 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence            345789999999877666558999999876554322111      1123456777754     2344432  24556766


Q ss_pred             EEcCCC----------cee-eEec-CCCcceEEEEECCCCCEEEEEeCC-------------CcEEEEeCCCC-------
Q 008467          384 CKIGEN----------RPI-KTFA-GHQGEVNCVKWDPTGSLLASCSDD-------------VTAKIWNMKQD-------  431 (564)
Q Consensus       384 ~~~~~~----------~~~-~~~~-~h~~~i~~v~~~~~~~~las~s~d-------------g~i~iwd~~~~-------  431 (564)
                      +.....          +.+ ..+. +.......|.|.|||.+.++.++.             |.|.-.+....       
T Consensus       112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf  191 (347)
T 3das_A          112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPF  191 (347)
T ss_dssp             EEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSS
T ss_pred             EEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCC
Confidence            766541          111 1121 112234579999999988886542             33322233211       


Q ss_pred             --eeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe------------------EEEEEeCC
Q 008467          432 --KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK------------------LLYSLNGH  491 (564)
Q Consensus       432 --~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~------------------~~~~~~~h  491 (564)
                        ..+.. .+|. ....++|.|++.        ++.+--+.|+--.|--+..|.                  .+..+..+
T Consensus       192 ~~~~i~a-~G~R-Np~Gla~dp~G~--------L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~  261 (347)
T 3das_A          192 PGSPVYS-YGHR-NVQGLAWDDKQR--------LFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTD  261 (347)
T ss_dssp             TTCCEEE-BCCS-BCCEEEECTTCC--------EEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTT
T ss_pred             CCCeEEe-eCCC-CcceEEECCCCC--------EEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCC
Confidence              00100 1221 234567776543        122111222211111111111                  12223222


Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE---EEE-ec-CCCEEEEEEccCCCEEEEEE
Q 008467          492 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV---KTY-TG-NGGIFEVCWNKEGDKIAACF  552 (564)
Q Consensus       492 ~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~---~~~-~~-~~~i~~~~w~~~g~~la~~~  552 (564)
                      ......++|. +|..++..-..+.|....+..+..+   ..+ .+ .+.+.+|+..|||..+++..
T Consensus       262 ~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          262 EASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             TCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             CCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence            2345667776 4555555555566666666544321   122 22 35689999999998776653

>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1

Probab=89.64  E-value=0.076  Score=38.80  Aligned_cols=32  Identities=28%  Similarity=0.371  Sum_probs=29.2

Q ss_pred             cchhhhhHHHHHhcCCceeeeccccccCCccC
Q 008467            7 EELNYLVFRYLQESGLLHSAFVLGYEAGINKC   38 (564)
Q Consensus         7 ~evn~Li~ryl~E~g~~~sa~~~~~E~~~~~~   38 (564)
                      +|+|.=|..||+-+||..++-+|..|.+++.+
T Consensus        11 eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~   42 (88)
T 1uuj_A           11 DELNRAIADYLRSNGYEEAYSVFKKEAELDMN   42 (88)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCC
Confidence            79999999999999999999999999877643

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=89.17  E-value=11  Score=40.14  Aligned_cols=190  Identities=10%  Similarity=0.075  Sum_probs=93.9

Q ss_pred             CCCEEEEeeCC----CcEEEEECCCcceeEEE-ee-----ccc-CeEEEEcC--CCceEEEEeCC------CeEEEEEcC
Q 008467          327 KGDYLLTGSCD----KTAIVWDVKTEEWKQQF-EF-----HSG-PTLDVDWR--NNVSFATSSTD------NMIYVCKIG  387 (564)
Q Consensus       327 ~~~~l~s~s~D----~~v~iwd~~~~~~~~~~-~~-----~~~-~~~~~~~~--~~~~~~~~~~d------~~i~~~~~~  387 (564)
                      ++..++.|+.+    ..+.+||+.+++|...- ..     ... ....+...  ++..++.++.+      +.+++++..
T Consensus       397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~  476 (695)
T 2zwa_A          397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK  476 (695)
T ss_dssp             SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred             CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCC
Confidence            45556666643    46888999888877644 21     111 11222223  55566666532      246777776


Q ss_pred             CCce--eeEecCCCcceEEEEECCCCCEEEEEeCCC--cEEEEeCCCCeeeeecc-----cccccEEEEEEccCCCCCCC
Q 008467          388 ENRP--IKTFAGHQGEVNCVKWDPTGSLLASCSDDV--TAKIWNMKQDKYVHDLR-----EHSKEIYTIRWSPTGSGTNN  458 (564)
Q Consensus       388 ~~~~--~~~~~~h~~~i~~v~~~~~~~~las~s~dg--~i~iwd~~~~~~~~~~~-----~~~~~i~~i~~~p~~~~~~~  458 (564)
                      +..=  +..+......- +++.-.++++++.|+.++  .+.+||..+......-.     .......++.+....     
T Consensus       477 t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~-----  550 (695)
T 2zwa_A          477 TREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVS-----  550 (695)
T ss_dssp             TTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTT-----
T ss_pred             CCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCC-----
Confidence            5421  11111111111 222323788888887655  68899988765432110     000001112222210     


Q ss_pred             CCCcEEEEEEeC--C-----CeEEEEeCCCCe--------EEEEEe-CCCCCEEEEEEcCCCCEEEEEeCC--------C
Q 008467          459 PNQQLILASASF--D-----STVKLWDVELGK--------LLYSLN-GHREPVYSLAFSPTGEYLASGSLD--------K  514 (564)
Q Consensus       459 ~~~~~~l~s~s~--d-----g~i~iwd~~~~~--------~~~~~~-~h~~~i~~~~~spdg~~lasgs~d--------g  514 (564)
                        +. +++.|+.  +     +.+.+||+.+.+        .+.... ..+.....+ ...++++++.||.+        .
T Consensus       551 --~~-iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~-~~~~~~iyv~GG~~~~~~~~~~~  626 (695)
T 2zwa_A          551 --KQ-GIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIK-YITPRKLLIVGGTSPSGLFDRTN  626 (695)
T ss_dssp             --TE-EEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEE-EEETTEEEEECCBCSSCCCCTTT
T ss_pred             --CE-EEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEE-EeCCCEEEEECCccCCCCCCCCC
Confidence              12 4444544  2     458889988765        111111 111111222 23337777877743        4


Q ss_pred             cEEEEeCCCCeE
Q 008467          515 SMHIWSLKEGKI  526 (564)
Q Consensus       515 ~i~iw~~~~~~~  526 (564)
                      .|.+||..+.+-
T Consensus       627 ~v~~yd~~t~~W  638 (695)
T 2zwa_A          627 SIISLDPLSETL  638 (695)
T ss_dssp             SEEEEETTTTEE
T ss_pred             eEEEEECCCCeE
Confidence            699999987754

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=88.82  E-value=19  Score=35.42  Aligned_cols=233  Identities=12%  Similarity=0.151  Sum_probs=129.4

Q ss_pred             ECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCc-ceeEEEeeccc--
Q 008467          283 WNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE-EWKQQFEFHSG--  359 (564)
Q Consensus       283 ~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~~--  359 (564)
                      .+|..+.+|.-. ..++.|++.+.+.+..-.....+|.--+|-.....-+.  .+..|.-|++... ...+.|..|..  
T Consensus        73 MnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lV--T~taVyHWsi~~~s~P~kvFdR~~~L~  149 (494)
T 1bpo_A           73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALV--TDNAVYHWSMEGESQPVKMFDRHSSLA  149 (494)
T ss_dssp             ECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEE--CSSEEEEEESSSSCCCEEEEECCGGGT
T ss_pred             eCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEE--cCCeeEEecccCCCCchhheecchhcc
Confidence            456666666655 67999999987655433334457777888765543232  2568999998643 34555655442  


Q ss_pred             --CeEEEEcCCCc--eEEEE--eC----CCeEEEEEcCCCceeeEecCCCcceEEEEECCC---CCEEEEEeCC---CcE
Q 008467          360 --PTLDVDWRNNV--SFATS--ST----DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT---GSLLASCSDD---VTA  423 (564)
Q Consensus       360 --~~~~~~~~~~~--~~~~~--~~----d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~---~~~las~s~d---g~i  423 (564)
                        .++......+.  ..+++  ..    .|.+.+|....+ ..+.+.||.+....+....+   .++++-+...   +.+
T Consensus       150 ~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kL  228 (494)
T 1bpo_A          150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKL  228 (494)
T ss_dssp             TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEE
T ss_pred             cceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEE
Confidence              23332222222  11211  12    345667776543 34667888776655544322   1244444443   678


Q ss_pred             EEEeCCCCe-eeeecccccccEEEEEEccCCCCCC------CCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEE
Q 008467          424 KIWNMKQDK-YVHDLREHSKEIYTIRWSPTGSGTN------NPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVY  496 (564)
Q Consensus       424 ~iwd~~~~~-~~~~~~~~~~~i~~i~~~p~~~~~~------~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~  496 (564)
                      +|-++.... -.   .........+-|.|+....+      ++.. -++..-..-|.|.++|+.++.+++.-+-...+|.
T Consensus       229 hi~Ei~~~~~~~---~~f~kk~vdv~fppe~~~DFPvamqvs~ky-gviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF  304 (494)
T 1bpo_A          229 HIIEVGTPPTGN---QPFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGTCIYMNRISGETIF  304 (494)
T ss_dssp             EEEECSCCCTTC---CCCCCEEEECCCCTTSTTCCEEEEEEETTT-TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred             EEEEcCCCccCC---CCccceeeeeeCCcccccCceeEEEecccC-CEEEEEecCceEEEEecccceeeeeecccCCceE
Confidence            888874320 00   01112233333434322111      0111 1444556789999999999999988777777777


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 008467          497 SLAFSPTGEYLASGSLDKSMHIWSLKE  523 (564)
Q Consensus       497 ~~~~spdg~~lasgs~dg~i~iw~~~~  523 (564)
                      ..+.+....-++.....|.|.--.+..
T Consensus       305 ~t~~~~~~~Gi~~Vnr~GqVl~v~v~e  331 (494)
T 1bpo_A          305 VTAPHEATAGIIGVNRKGQVLSVCVEE  331 (494)
T ss_dssp             EEEEETTTTEEEEEETTCEEEEEEECT
T ss_pred             EecccCCCCcEEEEccCceEEEEEEcc
Confidence            766666555555555666665554443

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=88.50  E-value=6.9  Score=37.38  Aligned_cols=91  Identities=8%  Similarity=0.028  Sum_probs=41.9

Q ss_pred             CCEEEEeeC-CCcEEEEECCC--cceeEEEeec-cc-CeEEEEcCCCceEEEEeC-C---------CeEEEEEcCCCce-
Q 008467          328 GDYLLTGSC-DKTAIVWDVKT--EEWKQQFEFH-SG-PTLDVDWRNNVSFATSST-D---------NMIYVCKIGENRP-  391 (564)
Q Consensus       328 ~~~l~s~s~-D~~v~iwd~~~--~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~-d---------~~i~~~~~~~~~~-  391 (564)
                      +..++.|+. ...+.++|+.+  .+|...-... .. ....+...++..++.++. +         +.+++++..+..= 
T Consensus        20 ~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~   99 (357)
T 2uvk_A           20 DTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWV   99 (357)
T ss_dssp             TEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEE
T ss_pred             CEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEE
Confidence            344444443 34677888763  5555432222 11 111222234555665554 1         3577777765431 


Q ss_pred             -eeEec-CCCcceEEEEECCCCCEEEEEeCC
Q 008467          392 -IKTFA-GHQGEVNCVKWDPTGSLLASCSDD  420 (564)
Q Consensus       392 -~~~~~-~h~~~i~~v~~~~~~~~las~s~d  420 (564)
                       +..+. .......++.  .++++++.|+.+
T Consensus       100 ~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~  128 (357)
T 2uvk_A          100 KLMSHAPMGMAGHVTFV--HNGKAYVTGGVN  128 (357)
T ss_dssp             ECSCCCSSCCSSEEEEE--ETTEEEEEECCC
T ss_pred             ECCCCCCcccccceEEE--ECCEEEEEeCcC
Confidence             11111 1111122222  467888888765

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=88.08  E-value=16  Score=33.64  Aligned_cols=180  Identities=16%  Similarity=0.091  Sum_probs=90.6

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEECC--CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEE
Q 008467          277 DVTTLDWNGEGTLLATGSYDGQARIWSTN--GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF  354 (564)
Q Consensus       277 ~V~~l~~s~~g~~l~sg~~dg~i~vw~~~--~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  354 (564)
                      .|..++-.....+++  . ||.+..|-.+  +++- ....-...|..++....  +.+.-. ||.|..|-..........
T Consensus        64 ~i~~ia~G~~hs~~l--~-~G~v~~wG~n~~Gqlg-~P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~  136 (282)
T 3qhy_B           64 GVDAIAAGNYHSLAL--K-DGEVIAWGGNEDGQTT-VPAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVP  136 (282)
T ss_dssp             CCCEEEECSSEEEEE--E-TTEEEEEECCTTSTTC-CCGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCC
T ss_pred             CEEEEEeCCCEEEEE--E-CCEEEEeeCCCCCCCC-CCcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCC
Confidence            466666554433333  4 8999999754  2221 11111346777765543  344445 999999975432111111


Q ss_pred             eecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeee
Q 008467          355 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV  434 (564)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~  434 (564)
                      ......+..+..-....++..  ++.++.|-......+..-..-...|..++......+ +.  .||.+..|-......+
T Consensus       137 ~~~~~~i~~i~~G~~~~~~l~--~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~-al--~~G~v~~wG~n~~gql  211 (282)
T 3qhy_B          137 AEAQSGVTALDGGVYTALAVK--NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSL-AL--KDGKVIAWGDNRYKQT  211 (282)
T ss_dssp             GGGGSSEEEEEECSSEEEEEE--TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEE-EE--ETTEEEEEECCTTSTT
T ss_pred             ccCCCCeEEEEcccCEEEEEE--CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEEE-EE--ECCeEEEEECCCCCCC
Confidence            111234555554444444443  789999876543221111111245777776644333 33  5899999976543222


Q ss_pred             eecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC
Q 008467          435 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE  480 (564)
Q Consensus       435 ~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~  480 (564)
                      -.-......|..|+-...          ..++..  ||.|..|-..
T Consensus       212 g~p~~~~~~v~~i~~G~~----------h~~al~--~g~v~~wG~n  245 (282)
T 3qhy_B          212 TVPTEALSGVSAIASGEW----------YSLALK--NGKVIAWGSS  245 (282)
T ss_dssp             CCCGGGGSSCCEEEECSS----------CEEEEE--TTEEEEESTT
T ss_pred             CCCcccCCCceEEEcCCC----------EEEEEE--CCEEEEecCC
Confidence            110111223445543221          123333  8999999654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=87.09  E-value=19  Score=33.50  Aligned_cols=139  Identities=9%  Similarity=0.031  Sum_probs=80.7

Q ss_pred             EECCCCCEEEEEeCC--------------CeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEee--CCC--cEEEE
Q 008467          282 DWNGEGTLLATGSYD--------------GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGS--CDK--TAIVW  343 (564)
Q Consensus       282 ~~s~~g~~l~sg~~d--------------g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s--~D~--~v~iw  343 (564)
                      -++++|.+|.-+...              ..|+..+.++.....+....    +..|++++++|+-..  .++  .|..-
T Consensus        59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~  134 (302)
T 3s25_A           59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDP----CIYASLIGNYIYYLHYDTQTATSLYRI  134 (302)
T ss_dssp             EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECSC----EEEEEEETTEEEEEEESSSSCEEEEEE
T ss_pred             eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecCC----ccEEEEeCCEEEEEeecCCCCceEEEE
Confidence            456778877776543              36777777776554443322    235677888887665  334  45555


Q ss_pred             ECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCC--
Q 008467          344 DVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV--  421 (564)
Q Consensus       344 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg--  421 (564)
                      ++.... .+.+..+..  ..++|.....+.+......|++.++........+.+   ... ..++|++..|+-....+  
T Consensus       135 ~~dGs~-~~~lt~~~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~  207 (302)
T 3s25_A          135 RIDGEE-KKKIKNHYL--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDN  207 (302)
T ss_dssp             ETTSCC-CEEEESSCC--CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTT
T ss_pred             ECCCCC-eEEEeCCCc--eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCc
Confidence            655433 223322222  345777777666666678899998877655444443   222 23558888887665443  


Q ss_pred             cEEEEeCCCC
Q 008467          422 TAKIWNMKQD  431 (564)
Q Consensus       422 ~i~iwd~~~~  431 (564)
                      .|..-++...
T Consensus       208 ~I~~~~ldG~  217 (302)
T 3s25_A          208 AIVHVNINNP  217 (302)
T ss_dssp             EEEEECSSSC
T ss_pred             EEEEEECCCC
Confidence            3444444443

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=87.02  E-value=20  Score=33.47  Aligned_cols=235  Identities=7%  Similarity=0.009  Sum_probs=119.6

Q ss_pred             CCCCEEEEEe--CCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCC--------------CcEEEEECCCc
Q 008467          285 GEGTLLATGS--YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD--------------KTAIVWDVKTE  348 (564)
Q Consensus       285 ~~g~~l~sg~--~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D--------------~~v~iwd~~~~  348 (564)
                      .+|..+....  .++.|...+.+|.....+...    .+--++++|.+|+-+...              ..|+..++...
T Consensus        23 ~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~   98 (302)
T 3s25_A           23 ESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGH   98 (302)
T ss_dssp             EETTEEEEEEGGGTTEEEEEETTSCSCEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSC
T ss_pred             EeCCEEEEEeCCCCceEEEEcCCCCCCEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCC
Confidence            3555555553  245666667776554444322    123458889888766542              35677777665


Q ss_pred             ceeEEEeecccCeEEEEcCCCceEEEE---eCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC-CCcEE
Q 008467          349 EWKQQFEFHSGPTLDVDWRNNVSFATS---STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAK  424 (564)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~-dg~i~  424 (564)
                      +... +.  ..+...+....+..+.+.   .....|+..++...... .+..+..    .+++++++.|+-.+. ...|.
T Consensus        99 ~~~~-l~--~~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~-~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy  170 (302)
T 3s25_A           99 GSTV-LD--PDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKK-KIKNHYL----FTCNTSDRYFYYNNPKNGQLY  170 (302)
T ss_dssp             CCEE-EE--CSCEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCE-EEESSCC----CCSEEETTEEEEECTTTCCEE
T ss_pred             cceE-ee--cCCccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeE-EEeCCCc----eEeeEECCEEEEEeCCCceEE
Confidence            4322 21  222233444445444444   34556777777654433 3333322    345778888776655 56777


Q ss_pred             EEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC-CeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCC
Q 008467          425 IWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-STVKLWDVELGKLLYSLNGHREPVYSLAFSPT  503 (564)
Q Consensus       425 iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~h~~~i~~~~~spd  503 (564)
                      .-++..+.....+.   +... ..+.|.+.        .+..+-..+ ..|..-++..+. ...+..  ..+  ..|+|+
T Consensus       171 ~~~l~g~~~~~l~~---~~~~-~~~~P~g~--------~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~--~~~~~~  233 (302)
T 3s25_A          171 RYDTASQSEALFYD---CNCY-KPVVLDDT--------NVYYMDVNRDNAIVHVNINNPN-PVVLTE--ANI--EHYNVY  233 (302)
T ss_dssp             EEETTTTEEEEEEC---SCEE-EEEEEETT--------EEEEEEGGGTTEEEEECSSSCC-CEECSC--SCE--EEEEEE
T ss_pred             EEECCCCCEEEEeC---CCcc-ceeeecCC--------EEEEEEcCCCcEEEEEECCCCC-eEEEeC--CCc--ceEEEC
Confidence            77776654332222   2222 23446654        233332222 355555655333 333332  233  347888


Q ss_pred             CCEEEEEeC--CCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEE
Q 008467          504 GEYLASGSL--DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACF  552 (564)
Q Consensus       504 g~~lasgs~--dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~  552 (564)
                      |.+|.-++.  .+.|..-++..........+  .+.  ++++.+++|....
T Consensus       234 g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~--~~~--~i~i~~d~Iy~td  280 (302)
T 3s25_A          234 GSLIFYQRGGDNPALCVVKNDGTGFKELAKG--EFC--NINVTSQYVYFTD  280 (302)
T ss_dssp             TTEEEEEECSSSCEEEEEETTSCCCEEEEES--CEE--EEEECSSEEEEEE
T ss_pred             CCEEEEEECCCCcEEEEEECCCCccEEeeCC--ccc--eEEEeCCEEEEEE
Confidence            988876533  34566656543322222222  222  4455666666554

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=86.17  E-value=29  Score=34.61  Aligned_cols=104  Identities=12%  Similarity=0.081  Sum_probs=58.6

Q ss_pred             CEEEEEeCCCCC-EEEEeeCCCcEEEEECCCcc---eeEEEe--e-------cccCeEEEEcCCC-----ceEEEEeC--
Q 008467          318 PIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEE---WKQQFE--F-------HSGPTLDVDWRNN-----VSFATSST--  377 (564)
Q Consensus       318 ~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~---~~~~~~--~-------~~~~~~~~~~~~~-----~~~~~~~~--  377 (564)
                      .-+.|+|.|+|. .|+.+...|.|++++.....   .+..+.  .       .....+.+.+.++     ..+++-+.  
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~   94 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ   94 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence            347899999996 56667788999999754321   111111  0       0234567777654     34444321  


Q ss_pred             C----------CeEEEEEcCCC----------ceeeEec--CCCcceEEEEECCCCCEEEEEeCCC
Q 008467          378 D----------NMIYVCKIGEN----------RPIKTFA--GHQGEVNCVKWDPTGSLLASCSDDV  421 (564)
Q Consensus       378 d----------~~i~~~~~~~~----------~~~~~~~--~h~~~i~~v~~~~~~~~las~s~dg  421 (564)
                      +          ..|..+.+...          +.+..+.  ........|+|.|||.+.++.++.+
T Consensus        95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~  160 (463)
T 2wg3_C           95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM  160 (463)
T ss_dssp             CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred             CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence            1          24555665421          1222221  2223467899999999988776644

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=85.63  E-value=23  Score=37.55  Aligned_cols=148  Identities=12%  Similarity=0.124  Sum_probs=77.2

Q ss_pred             CCCCEEEEEeCC----CeEEEEECCCceeEeec-C--------CCCCEEEEEeCCCCCEEEEeeCC------CcEEEEEC
Q 008467          285 GEGTLLATGSYD----GQARIWSTNGDLKCTLS-K--------HKGPIFSLKWNKKGDYLLTGSCD------KTAIVWDV  345 (564)
Q Consensus       285 ~~g~~l~sg~~d----g~i~vw~~~~~~~~~~~-~--------h~~~V~~l~~~~~~~~l~s~s~D------~~v~iwd~  345 (564)
                      .++.+++.|+.+    ..+.+||.....-..+. .        ....-..+.+..++..++.|+.+      ..+.+||+
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            466777888764    35677776543222222 1        11111222232266667777654      35789999


Q ss_pred             CCcceeEEEeecccC--eEEEEcCCCceEEEEeCCC--eEEEEEcCCCceeeE-----ecCCCcceEEEEECCC-CCEEE
Q 008467          346 KTEEWKQQFEFHSGP--TLDVDWRNNVSFATSSTDN--MIYVCKIGENRPIKT-----FAGHQGEVNCVKWDPT-GSLLA  415 (564)
Q Consensus       346 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~--~i~~~~~~~~~~~~~-----~~~h~~~i~~v~~~~~-~~~la  415 (564)
                      .+.+|...-......  ...+.+.++..++.++.++  .+++|+..+..=...     +........++.+..+ +++++
T Consensus       476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv  555 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII  555 (695)
T ss_dssp             TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred             CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence            988876642221111  1122223566666665443  678888766431111     1111111233555544 67777


Q ss_pred             EEeC--C-----CcEEEEeCCCCe
Q 008467          416 SCSD--D-----VTAKIWNMKQDK  432 (564)
Q Consensus       416 s~s~--d-----g~i~iwd~~~~~  432 (564)
                      .|+.  +     ..+.+||+.+..
T Consensus       556 ~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          556 LGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             ECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             ECCcCCCCCeeeCcEEEEEccCCc
Confidence            7765  2     357888887765

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=83.77  E-value=2.7  Score=42.59  Aligned_cols=93  Identities=13%  Similarity=0.169  Sum_probs=64.6

Q ss_pred             CCCcEEEEEEeCCCeEEEEeCCC------Ce-------EEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-
Q 008467          459 PNQQLILASASFDSTVKLWDVEL------GK-------LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG-  524 (564)
Q Consensus       459 ~~~~~~l~s~s~dg~i~iwd~~~------~~-------~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~-  524 (564)
                      |+.++++++|-.+.+|.++|+++      ++       .+.... -.......+|.++|....|--.|..|.-|++... 
T Consensus       332 PDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~  410 (638)
T 3sbq_A          332 SDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAV  410 (638)
T ss_dssp             TTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHH
T ss_pred             CCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceEEEEeccHHH
Confidence            44457888888999999999873      11       122333 2345688999999966667778999999998753 


Q ss_pred             ---------eEEEEEecCCCEEEEEE------ccCCCEEEEEE
Q 008467          525 ---------KIVKTYTGNGGIFEVCW------NKEGDKIAACF  552 (564)
Q Consensus       525 ---------~~~~~~~~~~~i~~~~w------~~~g~~la~~~  552 (564)
                               .++....-+-.+-.+.-      .+||++|++..
T Consensus       411 ~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          411 RAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             HHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred             HHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence                     35555555544555543      78899888773

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=83.57  E-value=31  Score=32.81  Aligned_cols=108  Identities=14%  Similarity=0.088  Sum_probs=60.2

Q ss_pred             CccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC----CCEE
Q 008467          215 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE----GTLL  290 (564)
Q Consensus       215 h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~----g~~l  290 (564)
                      .-.....++|.|+|++|++-...|.|++++..++..           ..+................|+++|+    +.+.
T Consensus        30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~-----------~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lY   98 (347)
T 3das_A           30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK-----------TELGEVPGVSPSGEGGLLGIALSPDYASDHMVY   98 (347)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-----------EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEE
T ss_pred             CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE-----------eeecccCceeecCCCCceeeEeccccccCCEEE
Confidence            345568999999999888765589998887543321           0111111111122356789999995    4444


Q ss_pred             EEEe--CCCeEEEEECCC------c---eeE---ee---cCCCCCEEEEEeCCCCCEEEEee
Q 008467          291 ATGS--YDGQARIWSTNG------D---LKC---TL---SKHKGPIFSLKWNKKGDYLLTGS  335 (564)
Q Consensus       291 ~sg~--~dg~i~vw~~~~------~---~~~---~~---~~h~~~V~~l~~~~~~~~l~s~s  335 (564)
                      ++-+  .++.|.-|...+      .   ...   .+   ..|..  ..|.|.|+|...++.+
T Consensus        99 v~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g--~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A           99 AYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNG--GRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             EEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCC--CCEEECTTSCEEEECB
T ss_pred             EEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccC--ccccCCCCCCEEEEEC
Confidence            4322  233444444332      1   111   12   12432  4689999998777644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	564
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-48
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	9e-46
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-36
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-25
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-41
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-35
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-28
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-21
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-15
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-41
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-10
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-36
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-18
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	7e-15
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-33
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-24
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-32
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-25
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-17
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	8e-11
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-07
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	9e-27
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-11
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	5e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	5e-26
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-10
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-25
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-21
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-12
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-11
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-10
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	9e-25
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-23
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-20
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	9e-15
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-24
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	7e-14
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-12
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	7e-10
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	8e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	7e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	8e-23
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	9e-15
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-22
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-21
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-15
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	8e-11
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-21
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-18
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	6e-17
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	9e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-21
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-13
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-09
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	9e-09
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-20
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-11
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	5e-19
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-15
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-18
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-16
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-05
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	7e-16
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.004
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	4e-12
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	8e-08
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	9e-08
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	9e-10
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-08
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	4e-09
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	3e-08
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	3e-08
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	2e-06
d2bgra1	470	b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26,	2e-04
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	2e-04
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	4e-04
d2hqsa1	269	b.68.4.1 (A:163-431) TolB, C-terminal domain {Esch	2e-04

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  167 bits (423), Expect = 6e-48
 Identities = 76/301 (25%), Positives = 136/301 (45%), Gaps = 14/301 (4%)

Query: 275 SKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLT 333
              VT + ++   +++ + S D   ++W    GD + TL  H   +  + ++  G  L +
Sbjct: 17  RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLAS 76

Query: 334 GSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCKIGENRPI 392
            S D T  +WD +  E  +    H      V    N     ++S D  I + ++     +
Sbjct: 77  CSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV 136

Query: 393 KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT 452
           KTF GH+  V  V+ +  G+L+ASCS+D T ++W +   +   +LREH   +  I W+P 
Sbjct: 137 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPE 196

Query: 453 GSGTN-----------NPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFS 501
            S ++           +      L S S D T+K+WDV  G  L +L GH   V  + F 
Sbjct: 197 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH 256

Query: 502 PTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVL 560
             G+++ S + DK++ +W  K  + +KT       +  + ++K    +     + TV V 
Sbjct: 257 SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

Query: 561 D 561
           +
Sbjct: 317 E 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  161 bits (408), Expect = 9e-46
 Identities = 69/329 (20%), Positives = 123/329 (37%), Gaps = 46/329 (13%)

Query: 212 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 271
           L GH S V    + P  S++ S S D+T ++W    G                + +KG T
Sbjct: 13  LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD-------------FERTLKGHT 59

Query: 272 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYL 331
           +           +    L +  +            +   T+  H   + S+     GD++
Sbjct: 60  DSVQ---DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHI 116

Query: 332 LTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS-FATSSTDNMIYVCKIGENR 390
           ++ S DKT  +W+V+T    + F  H      V    + +  A+ S D  + V  +    
Sbjct: 117 VSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE 176

Query: 391 PIKTFAGHQGEVNCVKW--------------------DPTGSLLASCSDDVTAKIWNMKQ 430
                  H+  V C+ W                       G  L S S D T K+W++  
Sbjct: 177 CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST 236

Query: 431 DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG 490
              +  L  H   +  + +   G           + S + D T+++WD +  + + +LN 
Sbjct: 237 GMCLMTLVGHDNWVRGVLFHSGGK---------FILSCADDKTLRVWDYKNKRCMKTLNA 287

Query: 491 HREPVYSLAFSPTGEYLASGSLDKSMHIW 519
           H   V SL F  T  Y+ +GS+D+++ +W
Sbjct: 288 HEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  136 bits (343), Expect = 1e-36
 Identities = 63/286 (22%), Positives = 119/286 (41%), Gaps = 31/286 (10%)

Query: 300 RIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG 359
           + W      K  LS H+ P+  + ++     +++ S D T  VWD +T ++++  + H+ 
Sbjct: 1   KEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTD 60

Query: 360 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKT-FAGHQGEVNCVKWDPTGSLLASCS 418
              D+ + ++     S + +M       +         GH   V+ V   P G  + S S
Sbjct: 61  SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS 120

Query: 419 DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWD 478
            D T K+W ++    V     H + +  +R +  G+         ++AS S D TV++W 
Sbjct: 121 RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT---------LIASCSNDQTVRVWV 171

Query: 479 VELGKLLYSLNGHREPVYSLAF--------------------SPTGEYLASGSLDKSMHI 518
           V   +    L  HR  V  +++                       G +L SGS DK++ +
Sbjct: 172 VATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM 231

Query: 519 WSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVLDFR 563
           W +  G  + T  G +  +  V ++  G  I +C  + T+ V D++
Sbjct: 232 WDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK 277

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  104 bits (258), Expect = 4e-25
 Identities = 45/222 (20%), Positives = 75/222 (33%), Gaps = 45/222 (20%)

Query: 209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNG---GAQNGPLNVLVLK 265
           V    GH   V     +  G+L+AS S D T R+W +A           ++    +    
Sbjct: 136 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAP 195

Query: 266 HVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKW 324
                +  ++    T      G  L +GS D   ++W  + G    TL  H   +  + +
Sbjct: 196 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF 255

Query: 325 NKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVC 384
           +  G ++L+ + DKT  VWD K                                      
Sbjct: 256 HSGGKFILSCADDKTLRVWDYKN------------------------------------- 278

Query: 385 KIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW 426
                R +KT   H+  V  + +  T   + + S D T K+W
Sbjct: 279 ----KRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  151 bits (381), Expect = 1e-41
 Identities = 65/317 (20%), Positives = 114/317 (35%), Gaps = 33/317 (10%)

Query: 211 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGR 270
            L GH +++ A  W     LL S S D    IW                      +    
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTT-----------------NKVHA 92

Query: 271 TNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGP----IFSLKWNK 326
              +S  V T  +   G  +A G  D    I++            +        S     
Sbjct: 93  IPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 152

Query: 327 KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF-ATSSTDNMIYVCK 385
             + ++T S D T  +WD++T +    F  H+G  + +    +     + + D    +  
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212

Query: 386 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI--WNMKQDKYVHDLREHSKE 443
           + E    +TF GH+ ++N + + P G+  A+ SDD T ++      Q+   +        
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG 272

Query: 444 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPT 503
           I ++ +S +G          +L +   D    +WD         L GH   V  L  +  
Sbjct: 273 ITSVSFSKSGR---------LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD 323

Query: 504 GEYLASGSLDKSMHIWS 520
           G  +A+GS D  + IW+
Sbjct: 324 GMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  132 bits (332), Expect = 6e-35
 Identities = 60/315 (19%), Positives = 129/315 (40%), Gaps = 21/315 (6%)

Query: 255 QNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLS 313
             G + +   + ++G   +    +  + W  +  LL + S DG+  IW +   +    + 
Sbjct: 39  PVGRIQMRTRRTLRGHLAK----IYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIP 94

Query: 314 KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK----QQFEFHSGPTLDVDWRNN 369
                + +  +   G+Y+  G  D    ++++KT E      ++   H+G      + ++
Sbjct: 95  LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 154

Query: 370 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK 429
               TSS D    +  I   +   TF GH G+V  +   P   L  S + D +AK+W+++
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214

Query: 430 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN 489
           +         H  +I  I + P G+           A+ S D+T +L+D+   + L + +
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGN---------AFATGSDDATCRLFDLRADQELMTYS 265

Query: 490 GHRE--PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGD 546
                  + S++FS +G  L +G  D + ++W   +        G +  +  +    +G 
Sbjct: 266 HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGM 325

Query: 547 KIAACFANHTVCVLD 561
            +A    +  + + +
Sbjct: 326 AVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  114 bits (284), Expect = 2e-28
 Identities = 44/259 (16%), Positives = 84/259 (32%), Gaps = 8/259 (3%)

Query: 308 LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 367
            + TL  H   I+++ W      L++ S D   I+WD  T          S   +   + 
Sbjct: 47  TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA 106

Query: 368 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 427
            + ++      + I      + R        +   +               DD      +
Sbjct: 107 PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC-----RFLDDNQIVTSS 161

Query: 428 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYS 487
                 + D+    +       +      +      +  S + D++ KLWDV  G    +
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT 221

Query: 488 LNGHREPVYSLAFSPTGEYLASGSLDKSMHI---WSLKEGKIVKTYTGNGGIFEVCWNKE 544
             GH   + ++ F P G   A+GS D +  +    + +E           GI  V ++K 
Sbjct: 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281

Query: 545 GDKIAACFANHTVCVLDFR 563
           G  + A + +    V D  
Sbjct: 282 GRLLLAGYDDFNCNVWDAL 300

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 93.6 bits (231), Expect = 2e-21
 Identities = 29/137 (21%), Positives = 52/137 (37%), Gaps = 16/137 (11%)

Query: 209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVK 268
                GH S++ A  + P G+  A+GS D+T R++ +                   + + 
Sbjct: 219 RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ---------------ELMT 263

Query: 269 GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKK 327
              +     +T++ ++  G LL  G  D    +W     D    L+ H   +  L     
Sbjct: 264 YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD 323

Query: 328 GDYLLTGSCDKTAIVWD 344
           G  + TGS D    +W+
Sbjct: 324 GMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.9 bits (185), Expect = 1e-15
 Identities = 49/212 (23%), Positives = 79/212 (37%), Gaps = 37/212 (17%)

Query: 390 RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW 449
           R  +T  GH  ++  + W     LL S S D    IW+      VH +   S  + T  +
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105

Query: 450 SPTGSGTNNPNQQLILASASF------------------------------------DST 473
           +P+G+         I +  +                                     D+T
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165

Query: 474 VKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG- 532
             LWD+E G+   +  GH   V SL+ +P      SG+ D S  +W ++EG   +T+TG 
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225

Query: 533 NGGIFEVCWNKEGDKIAACFANHTVCVLDFRM 564
              I  +C+   G+  A    + T  + D R 
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRA 257

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  151 bits (382), Expect = 2e-41
 Identities = 66/372 (17%), Positives = 122/372 (32%), Gaps = 25/372 (6%)

Query: 172 VNSKPEENGVLQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLL 231
           ++   +       ++  +   +   +     ++   ++     HTS VC   +S  G  L
Sbjct: 21  LDLDSQSVPDALKKQTNDYYILYNPALPREIDV---ELHKSLDHTSVVCCVKFSNDGEYL 77

Query: 232 ASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKD-VTTLDWNGEGTLL 290
           A+G  + T +++ ++DG+      +        +++   ++  S   + ++ ++ +G  L
Sbjct: 78  ATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 136

Query: 291 ATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW 350
           ATG+ D   RIW         + +                 L        +         
Sbjct: 137 ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ 196

Query: 351 KQQFEFHSGPTLDVDWRNNVS--FATSSTDNMIYVCKIGENR-------PIKTFAGHQGE 401
                        V          A  S D  + V                ++  GH+  
Sbjct: 197 CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDS 256

Query: 402 VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTN---- 457
           V  V +   G  + S S D + K+WN++      D +  +     + +            
Sbjct: 257 VYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT 316

Query: 458 NPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLA------FSPTGEYLASGS 511
             N + I  S S D  V  WD + G  L  L GHR  V S+A        P     A+GS
Sbjct: 317 TQNDEYI-LSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS 375

Query: 512 LDKSMHIWSLKE 523
            D    IW  K+
Sbjct: 376 GDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.7 bits (140), Expect = 8e-10
 Identities = 30/149 (20%), Positives = 54/149 (36%), Gaps = 26/149 (17%)

Query: 437 LREHSKEIYTIRWSPTGSGT-NNPNQQLILASASFD-STVKLWDVELGKLLYSLNGHREP 494
              HSK I             +   +Q       ++ +  +  DVEL K L     H   
Sbjct: 9   RANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSL----DHTSV 64

Query: 495 VYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-------------------NGG 535
           V  + FS  GEYLA+G  +K+  ++ + +G +V   +                    +  
Sbjct: 65  VCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLY 123

Query: 536 IFEVCWNKEGDKIAACFANHTVCVLDFRM 564
           I  VC++ +G  +A    +  + + D   
Sbjct: 124 IRSVCFSPDGKFLATGAEDRLIRIWDIEN 152

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  138 bits (346), Expect = 2e-36
 Identities = 60/388 (15%), Positives = 112/388 (28%), Gaps = 59/388 (15%)

Query: 207 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKH 266
           +     + H +++ + +     S   S SGD   ++W           +N          
Sbjct: 5   ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDN----KLLDNENPKDKSYSHFV 58

Query: 267 VKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD-----------LKCTLSKH 315
            K   +             E  L+AT S+ G    +    +                   
Sbjct: 59  HKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMK 118

Query: 316 KGPIFSLKWNKKGD-----YLLTGSCDKTAIVWDV-KTEEWKQQFEFHSGPTLD------ 363
           K   ++LKW    D      L+      T  +W      +       +  PTL+      
Sbjct: 119 KHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVE 178

Query: 364 -----------VDWRNNVSFATSSTDNMIYV------CKIGENRPIKTFAGHQGEVNCVK 406
                      VD       AT   +  + +        +       +   +   +  VK
Sbjct: 179 SPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK 238

Query: 407 WDPTGSLLASCSDD---VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQL 463
           + P GSLLA   D        ++  +  + +  L   +            S         
Sbjct: 239 FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN 298

Query: 464 ----ILASASFDSTVKLWDVELGKLLYSLNGHREPVY----SLAFSPTGEYLASGSLDKS 515
                L SA +D  ++ WDV+  + + +LN H + +      LA    G+ LA   +   
Sbjct: 299 DSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDV 358

Query: 516 MHIWSLKEGKIVKTYTGNGGIFEVCWNK 543
              +  K  +       N  +  VC ++
Sbjct: 359 --KFLKKGWRSGMGADLNESLCCVCLDR 384

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 83.8 bits (205), Expect = 6e-18
 Identities = 43/343 (12%), Positives = 87/343 (25%), Gaps = 65/343 (18%)

Query: 219 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDV 278
                 +    L+A+ S       + I             L++L     K      +   
Sbjct: 70  QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFW--ALKW 127

Query: 279 TTLDWNGEGTLLATGSYDGQARIWSTNGDLKC-------------------TLSKHKGPI 319
              +       L      G   IW  +                        +        
Sbjct: 128 GASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFA 187

Query: 320 FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW-------RNNVSF 372
            S+  +++G  + TG  + T  + ++ T      FE       + +              
Sbjct: 188 TSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLL 246

Query: 373 ATSSTDNMIYVCKI----------------GENRPIKTFAGHQGEVNCVKWDPTGSLLAS 416
           A +   N      +                  ++       H   V  + ++ +G  L S
Sbjct: 247 AIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS 306

Query: 417 CSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKL 476
              D   + W++K  + +  L  H  +I             +      LA         +
Sbjct: 307 AGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGD-----SLAEPG------V 355

Query: 477 WDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIW 519
           +DV+  K         +   S   +   E L    LD+S+  +
Sbjct: 356 FDVKFLK---------KGWRSGMGADLNESLCCVCLDRSIRWF 389

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 74.1 bits (180), Expect = 7e-15
 Identities = 28/208 (13%), Positives = 62/208 (29%), Gaps = 45/208 (21%)

Query: 397 GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK------YVHDLREHSKEIYTIRWS 450
            H  ++  V      S   SCS D   K+W+ K           +    H   ++ +   
Sbjct: 12  AHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 69

Query: 451 PTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG----------HREPVYSLAF 500
                  +  +  ++A+ SF   +  + +        +             +   ++L +
Sbjct: 70  QAIE--RDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKW 127

Query: 501 SPTGE-----YLASGSLDKSMHIWSLK-------------------EGKIVKTYTGNGGI 536
             + +      L +  +  + +IW                      +G +    T +   
Sbjct: 128 GASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFA 187

Query: 537 FEVCWNKEGDKIAACFANHTVCVLDFRM 564
             V  ++ G  IA  F N TV + +   
Sbjct: 188 TSVDISERG-LIATGFNNGTVQISELST 214

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (322), Expect = 1e-33
 Identities = 68/343 (19%), Positives = 124/343 (36%), Gaps = 43/343 (12%)

Query: 209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGT------------------- 249
             +L+GH   V  C     G+ + SGS D+T ++W+   G                    
Sbjct: 9   PKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD 67

Query: 250 --SNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD 307
                G+ +  L V   +  +          T    +     + +GS D   R+W     
Sbjct: 68  NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETG 127

Query: 308 LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 367
            +C                 G  +++G+ D    VWD +TE      + H+     + + 
Sbjct: 128 -QCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF- 185

Query: 368 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 427
           + +   + S D  I V  +     I T  GHQ   + ++     ++L S + D T KIW+
Sbjct: 186 DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWD 243

Query: 428 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYS 487
           +K  + +  L+  +K    +                   ++S D TVKLWD++ G+ + +
Sbjct: 244 IKTGQCLQTLQGPNKHQSAVTCLQFNKNFV--------ITSSDDGTVKLWDLKTGEFIRN 295

Query: 488 LN-----GHREPVYSLAFSPTGEYLASGSLDKS----MHIWSL 521
           L      G    V+ +  S T    A GS + +    + +   
Sbjct: 296 LVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 338

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (250), Expect = 5e-24
 Identities = 61/265 (23%), Positives = 107/265 (40%), Gaps = 21/265 (7%)

Query: 302 WSTNGDLKC--TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG 359
           W   G+LK    L  H   + +      G+ +++GS D T  VW   T +  +    H+G
Sbjct: 1   WRR-GELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG 58

Query: 360 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 419
                  R+N+   + STD  + V        I T  GH   V C+              
Sbjct: 59  GVWSSQMRDNIII-SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK--------- 108

Query: 420 DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 479
               ++ +  +D  +      + +   +      +          + S ++D  VK+WD 
Sbjct: 109 ----RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDP 164

Query: 480 ELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEV 539
           E    L++L GH   VYSL F   G ++ SGSLD S+ +W ++ G  + T TG+  +   
Sbjct: 165 ETETCLHTLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT-S 221

Query: 540 CWNKEGDKIAACFANHTVCVLDFRM 564
               + + + +  A+ TV + D + 
Sbjct: 222 GMELKDNILVSGNADSTVKIWDIKT 246

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (313), Expect = 2e-32
 Identities = 39/311 (12%), Positives = 86/311 (27%), Gaps = 27/311 (8%)

Query: 214 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNE 273
            H   VCA   S     + +G      ++W I+             + +       R N 
Sbjct: 49  NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPG--------NKSPVSQLDCLNRDNY 99

Query: 274 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLT 333
               + +     +G  L  G       IW          ++      +            
Sbjct: 100 ----IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKV 155

Query: 334 GSCDKTAIVWDVKTEEWK---QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR 390
                +     V     +   +QF+ H+     +D  N+ +   +   +           
Sbjct: 156 CFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG 215

Query: 391 PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWS 450
                     ++  + + PTG    +   + +            + L  H   + +++++
Sbjct: 216 RQLQQHDFTSQIFSLGYCPTGEW-LAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFA 274

Query: 451 PTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASG 510
             G             S   D+ +  W    G  ++        V S   S   +Y+ +G
Sbjct: 275 YCGK---------WFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTG 324

Query: 511 SLDKSMHIWSL 521
           S DK   ++ +
Sbjct: 325 SGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (260), Expect = 3e-25
 Identities = 51/345 (14%), Positives = 103/345 (29%), Gaps = 30/345 (8%)

Query: 226 PAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 285
           PA S   +  G     +    D     G       +  L H         + V  +  + 
Sbjct: 11  PAYSFHVTADGQMQP-VPFPPDALIGPGIPRHARQINTLNH--------GEVVCAVTISN 61

Query: 286 EGTLLATGSYDGQARIWSTNGD------LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKT 339
               + TG   G  ++W  +         +         I S K    G  L+ G    T
Sbjct: 62  PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST 120

Query: 340 AIVWDVKTEEWKQQFEFHS---GPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA 396
             +WD+     + + E  S            ++    +  +D  I V  +     ++ F 
Sbjct: 121 LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ 180

Query: 397 GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGT 456
           GH    +C+     G+ L +   D         ++       + + +I+++ + PTG   
Sbjct: 181 GHTDGASCIDISNDGTKLWTGGLD-NTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWL 239

Query: 457 NNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSM 516
               +   +     +   K             + H   V SL F+  G++  S   D  +
Sbjct: 240 AVGMESSNVEVLHVNKPDKYQL----------HLHESCVLSLKFAYCGKWFVSTGKDNLL 289

Query: 517 HIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLD 561
           + W    G  +     +  +     + +   I     +    V +
Sbjct: 290 NAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.8 bits (200), Expect = 1e-17
 Identities = 41/268 (15%), Positives = 69/268 (25%), Gaps = 25/268 (9%)

Query: 212 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 271
                + + +C   P G  L  G   ST  IW +A  T                     T
Sbjct: 93  CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR--------------IKAELT 138

Query: 272 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYL 331
           +                  +  S    A     N  L      H      +  +  G  L
Sbjct: 139 SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKL 198

Query: 332 LTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRP 391
            TG  D T   WD++     QQ +F S     + +     +     ++            
Sbjct: 199 WTGGLDNTVRSWDLREGRQLQQHDFTSQIF-SLGYCPTGEWLAVGMESSNVEVLHVNKPD 257

Query: 392 IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP 451
                 H+  V  +K+   G    S   D     W       +   +  S  + +   S 
Sbjct: 258 KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISV 316

Query: 452 TGSGTNNPNQQLILASASFDSTVKLWDV 479
                        + + S D    +++V
Sbjct: 317 DDK---------YIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (147), Expect = 8e-11
 Identities = 18/152 (11%), Positives = 35/152 (23%), Gaps = 16/152 (10%)

Query: 418 SDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW 477
             D        +  + ++ L  H + +  +  S              + +      VK+W
Sbjct: 29  PPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTR---------HVYTGG-KGCVKVW 77

Query: 478 DVELGK-----LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG 532
           D+                    + S    P G  L  G    ++ IW L           
Sbjct: 78  DISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAEL 137

Query: 533 NGGIFEVCWNKEGDKIAACFANHTVCVLDFRM 564
                             CF+  +   +    
Sbjct: 138 TSSAPACYALAISPDSKVCFSCCSDGNIAVWD 169

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 4e-07
 Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 3/56 (5%)

Query: 193 IATTSASES---FEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTI 245
             +T        +  P          +S V +C  S     + +GSGD  A ++ +
Sbjct: 280 FVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score =  109 bits (272), Expect = 9e-27
 Identities = 32/349 (9%), Positives = 77/349 (22%), Gaps = 27/349 (7%)

Query: 193 IATTSASESFEIPNSDVTILE-GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSN 251
           IA  S  ++F    S   +L+      +          +           +      T  
Sbjct: 18  IAFVSRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK 77

Query: 252 GGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCT 311
                  L      +V     +++     +  +    +           I  +   +   
Sbjct: 78  AEKFEENLG-----NVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITD 132

Query: 312 LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS 371
            +      F             G   +   V+D++  +       +S         ++ +
Sbjct: 133 FTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKN 192

Query: 372 FATSSTDNMIYV-------CKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK 424
               S  ++                          G  N  K  P      +   D+   
Sbjct: 193 LYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDM 252

Query: 425 IWNMKQDKYVHDLRE----HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE 480
                                  I        G              A     +  +DV+
Sbjct: 253 YKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEF------AAYYQGAPEKGVLLKYDVK 306

Query: 481 LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKT 529
             K+       +  +  L  S   + +     D  ++ + L++ +  +T
Sbjct: 307 TRKV----TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERT 351

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 63.3 bits (152), Expect = 2e-11
 Identities = 13/163 (7%), Positives = 36/163 (22%), Gaps = 21/163 (12%)

Query: 205 PNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVL 264
             S   ++             P      +G  D        +    + G           
Sbjct: 216 VVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDY--------- 266

Query: 265 KHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKW 324
             +           +                 G    +         +++ K  +  L+ 
Sbjct: 267 -RMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT---RKVTEVKNNLTDLRL 322

Query: 325 NKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 367
           +     ++    D     + ++  E ++        T++ D R
Sbjct: 323 SADRKTVMVRKDDGKIYTFPLEKPEDER--------TVETDKR 357

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 46.8 bits (109), Expect = 5e-06
 Identities = 3/64 (4%), Positives = 10/64 (15%)

Query: 187 GPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIA 246
           G                  +     +    + +     S     +     D     + + 
Sbjct: 285 GEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLE 344

Query: 247 DGTS 250
               
Sbjct: 345 KPED 348

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  106 bits (264), Expect = 5e-26
 Identities = 47/329 (14%), Positives = 91/329 (27%), Gaps = 41/329 (12%)

Query: 215 HTSEVCACAWSPAGSLLASGSGDSTA-RIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNE 273
             +     ++ P  + +A   G S   R     D                +  V   T  
Sbjct: 16  QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSK--------------VPPVVQFTGH 61

Query: 274 KSKDVTTLDW--NGEGTLLATGSYDGQARIWSTNGDL---------KCTLSKHKGPIFSL 322
            S  VTT+ +        L +G   G+  +W    D          K       GPI  +
Sbjct: 62  GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121

Query: 323 KWNKKGDYLLTGSC--DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-----VSFATS 375
            W+ +G  L       D   +     +     +   HS        + +     ++    
Sbjct: 122 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 181

Query: 376 STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH 435
            +           +   +T       V  V++ P                    +     
Sbjct: 182 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL 241

Query: 436 DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPV 495
              E  +E             +        A+   D+T+++WDV   K +      ++ +
Sbjct: 242 KYIEDDQEPVQGGIFALSWLDSQ-----KFATVGADATIRVWDVTTSKCVQKWTLDKQQL 296

Query: 496 Y--SLAFSPTGE-YLASGSLDKSMHIWSL 521
               +    TG   + S SLD +++ + L
Sbjct: 297 GNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.9 bits (143), Expect = 2e-10
 Identities = 21/181 (11%), Positives = 43/181 (23%), Gaps = 19/181 (10%)

Query: 396 AGHQGEVNCVKWDPTGSLLASCS-DDVTAKIWNMKQDKY--VHDLREH-SKEIYTIRWSP 451
           +  +     + +DPT + +A         +  +    K   V     H S  + T+++SP
Sbjct: 14  STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSP 73

Query: 452 TGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN--------GHREPVYSLAFSPT 503
                        L S      V +W     K   S+             P+  +++   
Sbjct: 74  IKGSQ-------YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFE 126

Query: 504 GEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 563
           G  L      +      +           +G    +                        
Sbjct: 127 GRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVF 186

Query: 564 M 564
            
Sbjct: 187 Y 187

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  106 bits (263), Expect = 1e-25
 Identities = 32/333 (9%), Positives = 79/333 (23%), Gaps = 35/333 (10%)

Query: 208 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHV 267
            V I +     +      P+ SLL   S D +  ++       N            L   
Sbjct: 3   IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV----------DLLQS 52

Query: 268 KGRTNEKSKDVTTLDWNG-EGTLLATGSYDGQARIW--STNGDLKCTLSKHKGPIFSLKW 324
               +     +   ++       +  G+  G+        +   +   +           
Sbjct: 53  LRYKHP----LLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRIC 108

Query: 325 NKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSST------- 377
               D L+  S D    V D +          +             +  T+S+       
Sbjct: 109 KYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMN 168

Query: 378 DNMIYVCKIGENRPIKTFAGHQG----EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY 433
           ++ +   ++             G      +           A  S D    +        
Sbjct: 169 NSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD 228

Query: 434 VHDLREHSKEIYTIRWSPTGSGTNNPN------QQLILASASFDSTVKLWDVELGKLLYS 487
            ++  +              +     N      +   L +A  D  +  W+++  K + +
Sbjct: 229 DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKN 288

Query: 488 LNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS 520
                     +  + +   L   + D +    +
Sbjct: 289 FAKF-NEDSVVKIACSDNILCLATSDDTFKTNA 320

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 92.2 bits (227), Expect = 6e-21
 Identities = 42/313 (13%), Positives = 91/313 (29%), Gaps = 33/313 (10%)

Query: 275 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC----TLSKHKGPIFSLKWNKKGDY 330
              ++ +      +LL   S+DG   ++  +   K        ++K P+    +    D 
Sbjct: 11  KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL 70

Query: 331 LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR 390
            +     +  I+          Q   ++   L +              +   + ++ + R
Sbjct: 71  QIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPR 130

Query: 391 PIKTFAGHQGEVNCVKWDPT---------GSLLASCSDDVTAKIWNMKQDKYVHDLREHS 441
                      +N                 S L    ++   + + +   +  +   E S
Sbjct: 131 NYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEES 190

Query: 442 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL------------- 488
              Y IR          P +Q   A +S D  V +   +     Y+              
Sbjct: 191 GLKYQIRDV-----ALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNL 245

Query: 489 --NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGD 546
                  PV S+ FSP  ++L +   D  +  W+L+  K +K +        V      +
Sbjct: 246 KDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDN 305

Query: 547 KIAACFANHTVCV 559
            +    ++ T   
Sbjct: 306 ILCLATSDDTFKT 318

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.6 bits (158), Expect = 3e-12
 Identities = 35/306 (11%), Positives = 79/306 (25%), Gaps = 44/306 (14%)

Query: 214 GHTSEVCACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTN 272
            +   +  C +       +  G+         +    S     N   N+ + +  K   +
Sbjct: 54  RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDD 113

Query: 273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL 332
           +                      D +              +  K        +     L+
Sbjct: 114 KLIAASWDGLIE---------VIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLI 164

Query: 333 TGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR-----NNVSFATSSTDNMIYV---- 383
            G  +     + +   E        SG    +            +A SS D  + V    
Sbjct: 165 VGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFD 224

Query: 384 -----------CKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK 432
                           +R           VN +++ P    L +   D     WN++  K
Sbjct: 225 DQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK 284

Query: 433 YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR 492
            + +  + + E   ++ + + +         IL  A+ D T K        +  ++  + 
Sbjct: 285 KIKNFAKFN-EDSVVKIACSDN---------ILCLATSDDTFKTN----AAIDQTIELNA 330

Query: 493 EPVYSL 498
             +Y +
Sbjct: 331 SSIYII 336

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.6 bits (150), Expect = 3e-11
 Identities = 7/86 (8%), Positives = 26/86 (30%), Gaps = 4/86 (4%)

Query: 483 KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL----KEGKIVKTYTGNGGIFE 538
           +++      ++ +  +   P+   L   S D S+ ++      K   ++++      +  
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61

Query: 539 VCWNKEGDKIAACFANHTVCVLDFRM 564
             +    D            +    +
Sbjct: 62  CNFIDNTDLQIYVGTVQGEILKVDLI 87

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.1 bits (141), Expect = 4e-10
 Identities = 9/68 (13%), Positives = 23/68 (33%), Gaps = 3/68 (4%)

Query: 390 RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR---EHSKEIYT 446
           + ++     +  ++ +K  P+ SLL   S D +  ++         DL     +   +  
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61

Query: 447 IRWSPTGS 454
             +     
Sbjct: 62  CNFIDNTD 69

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  103 bits (257), Expect = 9e-25
 Identities = 45/274 (16%), Positives = 89/274 (32%), Gaps = 20/274 (7%)

Query: 278 VTTLDWNGEGTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTG 334
           ++   WN + T +A    + +  I+  +G+       L +H G +  + W    + ++T 
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69

Query: 335 SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKI-------G 387
             D+ A VW +K   WK               R   +    +  +   V  I        
Sbjct: 70  GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 129

Query: 388 ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 447
                      +  V  + W P   LLA+ S D   +I++    +               
Sbjct: 130 WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMP 189

Query: 448 RWSPTGSGTNNPN---------QQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSL 498
                   +++               +A  S DSTV L D +    + +L     P+ ++
Sbjct: 190 FGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAV 249

Query: 499 AFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG 532
            F      +A+G  D    +++        ++ G
Sbjct: 250 TFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGG 282

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 99.5 bits (246), Expect = 3e-23
 Identities = 44/379 (11%), Positives = 92/379 (24%), Gaps = 55/379 (14%)

Query: 215 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEK 274
               +   AW+   + +A    +    I+  +            + V  LK   G+    
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK--------WVQVHELKEHNGQ---- 53

Query: 275 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD--------------------------L 308
              VT +DW  +   + T   D  A +W+  G                            
Sbjct: 54  ---VTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKF 110

Query: 309 KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 368
                     I   +                + V  +            S       +  
Sbjct: 111 AVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSA 170

Query: 369 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNM 428
            +           +  K+     +   +   G V+ V +   GS +A  S D T  + + 
Sbjct: 171 YIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA 230

Query: 429 KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL 488
            +   V  L   +  +  + +    S         ++A+   D    L+  +      S 
Sbjct: 231 DKKMAVATLASETLPLLAVTFITESS---------LVAAGH-DCFPVLFTYDSAAGKLSF 280

Query: 489 NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGD-- 546
            G  +     +           +LDK                     + ++     G   
Sbjct: 281 GGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAK 340

Query: 547 --KIAACFANHTVCVLDFR 563
             +      +  + + D R
Sbjct: 341 CSQFCTTGMDGGMSIWDVR 359

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 90.3 bits (222), Expect = 4e-20
 Identities = 41/336 (12%), Positives = 92/336 (27%), Gaps = 36/336 (10%)

Query: 209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADG--------TSNGGAQNGPLN 260
           V  L+ H  +V    W+P  + + +   D  A +WT+                A      
Sbjct: 44  VHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRW 103

Query: 261 VLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIF 320
               K     +  +   +   +   +  +        ++ + S +      L       F
Sbjct: 104 APNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF 163

Query: 321 SLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF-ATSSTDN 379
             +        +      T     +   E   +     G    V +  N S  A  S D+
Sbjct: 164 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS 223

Query: 380 MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 439
            + +    +   + T A     +  V +    SL+A+  D     ++             
Sbjct: 224 TVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFP-VLFTYD---------- 272

Query: 440 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG------KLLYSLNGHRE 493
                 +     +  G  +  +Q      +     +  D +              + H+ 
Sbjct: 273 ------SAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKN 326

Query: 494 PVYSLAFSPTGEY----LASGSLDKSMHIWSLKEGK 525
            V  ++    G+       +  +D  M IW ++  +
Sbjct: 327 SVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.7 bits (179), Expect = 9e-15
 Identities = 46/273 (16%), Positives = 84/273 (30%), Gaps = 28/273 (10%)

Query: 313 SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF--HSGPTLDVDW-RNN 369
           S    PI    WNK    +     +    +++    +W Q  E   H+G    VDW  ++
Sbjct: 4   SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS 63

Query: 370 VSFATSSTDNMIYV--CKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 427
               T  TD   YV   K    +P            CV+W P     A  S      I  
Sbjct: 64  NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICY 123

Query: 428 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLL-- 485
            +Q+      +   K I +   S      +     ++LA+ S D   +++   + ++   
Sbjct: 124 FEQENDWWVCKHIKKPIRSTVLSL-----DWHPNSVLLAAGSCDFKCRIFSAYIKEVEER 178

Query: 486 ----------------YSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKT 529
                           +  +     V+ + FS  G  +A  S D ++ +    +   V T
Sbjct: 179 PAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVAT 238

Query: 530 YTGNGGIFEVCWNKEGDKIAACFANHTVCVLDF 562
                             + A   +    +  +
Sbjct: 239 LASETLPLLAVTFITESSLVAAGHDCFPVLFTY 271

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score =  101 bits (251), Expect = 2e-24
 Identities = 32/313 (10%), Positives = 81/313 (25%), Gaps = 24/313 (7%)

Query: 211 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGR 270
           +  GH   + A + S  G  L S   +     W I+ G            V    H    
Sbjct: 7   VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI--------SNRVFPDVH---- 54

Query: 271 TNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDY 330
               +  +T +    +G L      D    + +    +  + +                 
Sbjct: 55  ----ATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSAD 110

Query: 331 LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR 390
                      +      +  +    ++   + +               +      G + 
Sbjct: 111 GDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV 170

Query: 391 PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWS 450
                  H  E+  V +   G+ L +         +++  +  +      +     +   
Sbjct: 171 SEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVAC- 229

Query: 451 PTGSGTNNPNQQLILASASFDSTVKLWDVELGKL--LYSLNGHREPVYSLAFSPTGEYLA 508
                 +     + LA+ S D++V +W++       +     H     +         + 
Sbjct: 230 -----VSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIV 284

Query: 509 SGSLDKSMHIWSL 521
           S   D ++  W++
Sbjct: 285 SAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 70.4 bits (170), Expect = 7e-14
 Identities = 33/292 (11%), Positives = 79/292 (27%), Gaps = 12/292 (4%)

Query: 275 SKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSK-HKGPIFSLKWNKKGDYLL 332
           +K +T L  + +G  L +   +G    W    G         H   I  +K   KGD   
Sbjct: 12  NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFT 71

Query: 333 TGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPI 392
               D   +V    +     +   +   +  +    +     +      ++      +  
Sbjct: 72  VSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLT 131

Query: 393 KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT 452
           +    +      +  D     +      V     +      V  +   ++       +  
Sbjct: 132 EVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNG 191

Query: 453 GSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL 512
                    + ++  +  ++              S   H   V  +++SP    LA+GSL
Sbjct: 192 AFLVATDQSRKVIPYSVANNFELAHT-------NSWTFHTAKVACVSWSPDNVRLATGSL 244

Query: 513 DKSMHIWSLKEGKIVKTYTGNGG---IFEVCWNKEGDKIAACFANHTVCVLD 561
           D S+ +W++ +                           I +   +  +   +
Sbjct: 245 DNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 64.2 bits (154), Expect = 6e-12
 Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 2/64 (3%)

Query: 481 LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG--NGGIFE 538
           LG +     GH + + +L+ S  G+ L S   +  ++ W +  G   + +       I  
Sbjct: 1   LGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITG 60

Query: 539 VCWN 542
           +   
Sbjct: 61  IKTT 64

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 58.1 bits (138), Expect = 7e-10
 Identities = 9/59 (15%), Positives = 18/59 (30%), Gaps = 1/59 (1%)

Query: 392 IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE-HSKEIYTIRW 449
            +   GH   +  +     G  L S   +     W++          + H+  I  I+ 
Sbjct: 5   DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 54.2 bits (128), Expect = 1e-08
 Identities = 15/89 (16%), Positives = 27/89 (30%), Gaps = 10/89 (11%)

Query: 437 LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-NGHREPV 495
              H+K I  +  S  G           L SA  +  +  WD+  G       + H   +
Sbjct: 8   RYGHNKAITALSSSADGK---------TLFSADAEGHINSWDISTGISNRVFPDVHATMI 58

Query: 496 YSLAFSPTGEYLASGSLDKSMHIWSLKEG 524
             +  +  G+       D    + +   G
Sbjct: 59  TGIKTTSKGDLFTVSWDDHLKVVPAGGSG 87

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.8 bits (114), Expect = 8e-07
 Identities = 39/275 (14%), Positives = 72/275 (26%), Gaps = 31/275 (11%)

Query: 210 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKG 269
              + H + +     +  G L      D    +     G               +   K 
Sbjct: 49  VFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSG---------------VDSSKA 93

Query: 270 RTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGD 329
             N+ S     L  + +G +     Y   A               +     +L  +K+  
Sbjct: 94  VANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL--TEVPISYNSSCVALSNDKQFV 151

Query: 330 YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGEN 389
            +               +    +     +  T      N      +     +    +  N
Sbjct: 152 AVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANN 211

Query: 390 R---PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK--QDKYVHDLREHSKEI 444
                  ++  H  +V CV W P    LA+ S D +  +WNM    D  +     H+   
Sbjct: 212 FELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSS 271

Query: 445 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 479
                    +          + SA  DS +K W+V
Sbjct: 272 VNSVIWLNET---------TIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.6 bits (90), Expect = 7e-04
 Identities = 6/37 (16%), Positives = 11/37 (29%)

Query: 209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTI 245
           + I   H             + + S   DS  + W +
Sbjct: 261 IIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 98.0 bits (242), Expect = 8e-23
 Identities = 53/367 (14%), Positives = 111/367 (30%), Gaps = 75/367 (20%)

Query: 210 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKG 269
           T L GH + V  C      + + +G+ D   R++   +                L  + G
Sbjct: 6   TTLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKK-------------FLLQLSG 51

Query: 270 RTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGP--IFSLKWNKK 327
                   V  L +   G L++  +           G        H        +   K 
Sbjct: 52  HDGG----VWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 107

Query: 328 GDYLLTGSCDKTAIVWDVKTEE----------------------WKQQFEFHSGPTLDVD 365
             Y++TGS D T  VW +  E                       +          ++   
Sbjct: 108 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV 167

Query: 366 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI 425
             +     + S DN + V  + + + +   +GH   +    +D       S S D T +I
Sbjct: 168 SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRI 227

Query: 426 WNMKQDKYVHD------------------------------LREHSKEIYTIRWSPTGSG 455
           W+++  + ++                                       ++   +   + 
Sbjct: 228 WDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAI 287

Query: 456 TNNPNQQLILASASFDSTVKLWDVELGKLLYS-LNGHREPVYSLAFSPTGEYLASGSLDK 514
           T       IL S S ++   ++++  GKL+++ +    + ++S+ F      +A+   D 
Sbjct: 288 TTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LVAAVEKDG 345

Query: 515 SMHIWSL 521
              +  L
Sbjct: 346 QSFLEIL 352

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.8 bits (179), Expect = 9e-15
 Identities = 56/271 (20%), Positives = 105/271 (38%), Gaps = 17/271 (6%)

Query: 309 KCTLSKHKGPIFS-LKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 367
           + TL  H   + + L++    +Y++TG+ DK   V+D   +++  Q   H G    + + 
Sbjct: 5   RTTLRGHMTSVITCLQFE--DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA 62

Query: 368 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGE--VNCVKWDPTGSLLASCSDDVTAKI 425
           +     + STD  + V  I +      F GH        +        + + S D T  +
Sbjct: 63  HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV 122

Query: 426 WNMKQDKYVHDLREHSKEIYTIRWSP------------TGSGTNNPNQQLILASASFDST 473
           W + ++  V D  E                          S         I+ S S+D+T
Sbjct: 123 WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNT 182

Query: 474 VKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 533
           + +WDV   K LY L+GH + +YS  +    +   S S+D ++ IW L+ G+++ T  G+
Sbjct: 183 LIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH 242

Query: 534 GGIFEVCWNKEGDKIAACFANHTVCVLDFRM 564
             +  +    +   ++A              
Sbjct: 243 TALVGLLRLSDKFLVSAAADGSIRGWDANDY 273

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.3 bits (235), Expect = 2e-22
 Identities = 51/320 (15%), Positives = 104/320 (32%), Gaps = 44/320 (13%)

Query: 209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVK 268
           +      +  V    +      + SG  D+T +IW                     + + 
Sbjct: 8   IHCRSETSKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLE-------------CKRILT 52

Query: 269 GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKG 328
           G T      V  L ++    +  +     +    +T   L   +   +  +     N   
Sbjct: 53  GHTGS----VLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMM 108

Query: 329 DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE 388
                        +        ++    H      VD+ ++    ++S D  I V     
Sbjct: 109 VTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-DDKYIVSASGDRTIKVWNTST 167

Query: 389 NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR 448
              ++T  GH+  + C+++     L+ S S D T ++W+++    +  L  H + +  IR
Sbjct: 168 CEFVRTLNGHKRGIACLQYRDR--LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR 225

Query: 449 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELG---------KLLYSLNGHREPVYSLA 499
           +               + S ++D  +K+WD+              L +L  H   V+ L 
Sbjct: 226 F-----------DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQ 274

Query: 500 FSPTGEYLASGSLDKSMHIW 519
           F      + S S D ++ IW
Sbjct: 275 FDEF--QIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.4 bits (225), Expect = 4e-21
 Identities = 40/253 (15%), Positives = 89/253 (35%), Gaps = 16/253 (6%)

Query: 311 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 370
             S+    ++ L+++     +++G  D T  +WD  T E K+    H+G  L + +   V
Sbjct: 10  CRSETSKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV 67

Query: 371 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 430
               SS   +                  +  ++    +      +         + +   
Sbjct: 68  IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD 127

Query: 431 DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG 490
                 L  H   +  + +               + SAS D T+K+W+    + + +LNG
Sbjct: 128 ITLRRVLVGHRAAVNVVDFDDKY-----------IVSASGDRTIKVWNTSTCEFVRTLNG 176

Query: 491 HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAA 550
           H+  +  L +      + SGS D ++ +W ++ G  ++   G+  +          +I +
Sbjct: 177 HKRGIACLQYRDR--LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN-KRIVS 233

Query: 551 CFANHTVCVLDFR 563
              +  + V D  
Sbjct: 234 GAYDGKIKVWDLV 246

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.1 bits (180), Expect = 3e-15
 Identities = 33/144 (22%), Positives = 58/144 (40%), Gaps = 15/144 (10%)

Query: 294 SYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ 352
           S D   ++W+T   +   TL+ HK  I  L++      +++GS D T  +WD++     +
Sbjct: 155 SGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLR 212

Query: 353 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKI---------GENRPIKTFAGHQGEVN 403
             E H          +N    + + D  I V  +              ++T   H G V 
Sbjct: 213 VLEGHEELV-RCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVF 271

Query: 404 CVKWDPTGSLLASCSDDVTAKIWN 427
            +++D     + S S D T  IW+
Sbjct: 272 RLQFD--EFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (146), Expect = 8e-11
 Identities = 33/207 (15%), Positives = 72/207 (34%), Gaps = 37/207 (17%)

Query: 390 RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW 449
           + I   +     V C+++D     + S   D T KIW+    +    L  H+  +  +++
Sbjct: 6   QRIHCRSETSKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY 63

Query: 450 SPTGSGTNNPNQQLILASASF-----------------------------DSTVKLWDVE 480
                 T + +  + +   +                              D ++ +WD+ 
Sbjct: 64  DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMA 123

Query: 481 LGKLL---YSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIF 537
               +     L GHR  V  + F       ASG  D+++ +W+    + V+T  G+    
Sbjct: 124 SPTDITLRRVLVGHRAAVNVVDFDDKYIVSASG--DRTIKVWNTSTCEFVRTLNGHKRGI 181

Query: 538 EVCWNKEGDKIAACFANHTVCVLDFRM 564
             C       + +  +++T+ + D   
Sbjct: 182 A-CLQYRDRLVVSGSSDNTIRLWDIEC 207

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 92.7 bits (228), Expect = 3e-21
 Identities = 53/309 (17%), Positives = 91/309 (29%), Gaps = 28/309 (9%)

Query: 219 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDV 278
                 +PAG  +   +G S      +   T               +     +++     
Sbjct: 20  AVVLGNTPAGDKIQYCNGTSV-YTVPVGSLT-------------DTEIYTEHSHQ----T 61

Query: 279 TTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSK---HKGPIFSLKWNKKGDYLLTGS 335
           T    +  G   A+G   G  RIW T        +      GP+  + W+ +   +    
Sbjct: 62  TVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVG 121

Query: 336 CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPI--- 392
             +         +                      S                   P    
Sbjct: 122 EGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF 181

Query: 393 -KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP 451
             TF  H   V+ V+++P GSL AS   D T  ++N         + E            
Sbjct: 182 KSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK-TGVFEDDSLKNVAHSGS 240

Query: 452 TGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH-REPVYSLAFSPTGEYLASG 510
               T +P+    +ASAS D T+K+W+V   K+  ++    R     L    T + L S 
Sbjct: 241 VFGLTWSPDGTK-IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSI 299

Query: 511 SLDKSMHIW 519
           S +  ++  
Sbjct: 300 SANGFINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 83.0 bits (203), Expect = 5e-18
 Identities = 41/296 (13%), Positives = 82/296 (27%), Gaps = 18/296 (6%)

Query: 278 VTTLDWNGEGTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC 336
              L     G  +   +           +       ++H       K +  G Y  +G  
Sbjct: 20  AVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV 78

Query: 337 DKTAIVWDVKTEEWKQQFEF--HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKT 394
                +WD        +      SGP  D+ W +      +  +       +       +
Sbjct: 79  HGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS 138

Query: 395 FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 454
                G+   +            S        +      + +      +      +    
Sbjct: 139 NGNLTGQARAMNSVDF-----KPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVH 193

Query: 455 GTNNPNQQLILASASFDSTVKLWDVELGKLLYS-------LNGHREPVYSLAFSPTGEYL 507
                    + AS   D T+ L++   G               H   V+ L +SP G  +
Sbjct: 194 SVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI 253

Query: 508 ASGSLDKSMHIWSLKEGKIVKTYTGNGGIFE--VCWNKEGDKIAACFANHTVCVLD 561
           AS S DK++ IW++   K+ KT      I +  +        + +  AN  +  ++
Sbjct: 254 ASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 79.6 bits (194), Expect = 6e-17
 Identities = 45/276 (16%), Positives = 71/276 (25%), Gaps = 13/276 (4%)

Query: 206 NSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLK 265
            +D  I   H+ +      SP+G   ASG      RIW     T          +     
Sbjct: 48  LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSG---P 104

Query: 266 HVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWN 325
                 + +SK +  +    E          G +    T           K        +
Sbjct: 105 VKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIIS 164

Query: 326 KKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCK 385
              D  +               E  K        P   +             + +     
Sbjct: 165 GSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKT 224

Query: 386 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK-EI 444
                       H G V  + W P G+ +AS S D T KIWN+   K    +   ++ E 
Sbjct: 225 GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIED 284

Query: 445 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE 480
             +    T            L S S +  +   + E
Sbjct: 285 QQLGIIWTKQA---------LVSISANGFINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.8 bits (122), Expect = 9e-08
 Identities = 19/168 (11%), Positives = 41/168 (24%), Gaps = 12/168 (7%)

Query: 399 QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNN 458
           +G    +   P G  +  C+   +     +          EHS +    + SP+G     
Sbjct: 17  RGTAVVLGNTPAGDKIQYCNGT-SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY---- 71

Query: 459 PNQQLILASASFDSTVKLWDVELGKLLYSLN--GHREPVYSLAFSPTGEYLASGSLDKSM 516
                  AS      V++WD      +          PV  +++    + +A+    +  
Sbjct: 72  -----YCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRER 126

Query: 517 HIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFRM 564
                            G    +              + +        
Sbjct: 127 FGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIF 174

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 91.9 bits (226), Expect = 3e-21
 Identities = 39/315 (12%), Positives = 94/315 (29%), Gaps = 38/315 (12%)

Query: 209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVK 268
           +  + GH   + A   +P    L SGS D     W+ +                      
Sbjct: 6   LKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH------------------- 42

Query: 269 GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKG 328
               + S  + +LD +                   T      T  +          N  G
Sbjct: 43  ---QDHSNLIVSLDNSKAQEYS-------SISWDDTLKVNGITKHEFGSQPKVASANNDG 92

Query: 329 DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE 388
              +    D   ++    T +  +    +S  +     +N V+      + +        
Sbjct: 93  FTAVLT-NDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDL 151

Query: 389 NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR 448
                     + + + +   P+ + +A+        +++++  +                
Sbjct: 152 EVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAI 211

Query: 449 WSPTGSGTNN--PNQQLILASASFDSTVKLWDVE-LGKLLYSLNGHREPVYSLAFSPTGE 505
                    N    ++ ++A+ S D+ + ++ V+   K++ +LN H++ V +L +     
Sbjct: 212 SWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS- 270

Query: 506 YLASGSLDKSMHIWS 520
            L S   D  +  W+
Sbjct: 271 TLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.3 bits (162), Expect = 6e-13
 Identities = 44/291 (15%), Positives = 86/291 (29%), Gaps = 22/291 (7%)

Query: 275 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTG 334
           +K +T L  N     L +GSYDG+   W            H   I SL  +K  +Y    
Sbjct: 13  NKGITALTVNP----LISGSYDGRIMEW----SSSSMHQDHSNLIVSLDNSKAQEY---- 60

Query: 335 SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKT 394
                + +    T +     +   G    V   NN  F    T++   +        I  
Sbjct: 61  -----SSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIK 115

Query: 395 FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 454
                   + V        +     +          +           +   I  SP+ +
Sbjct: 116 SVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSET 175

Query: 455 GTNNPNQQLILASASFDST--VKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL 512
                +    +      S              + +++       +       + +A+GSL
Sbjct: 176 YIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSL 235

Query: 513 DKSMHIWSLKE-GKIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVLD 561
           D ++ I+S+K   KI+K       G+  + W      + +  A+  +   +
Sbjct: 236 DTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.1 bits (133), Expect = 3e-09
 Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 9/67 (13%)

Query: 387 GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT 446
           G +  +KT +GH   +  +  +P    L S S D     W+          ++HS  I +
Sbjct: 1   GHDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSS-----MHQDHSNLIVS 51

Query: 447 IRWSPTG 453
           +  S   
Sbjct: 52  LDNSKAQ 58

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.6 bits (129), Expect = 9e-09
 Identities = 17/90 (18%), Positives = 27/90 (30%), Gaps = 18/90 (20%)

Query: 430 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN 489
            D+ +  +  H+K I  +  +P             L S S+D  +  W            
Sbjct: 2   HDEVLKTISGHNKGITALTVNP-------------LISGSYDGRIMEWSSSSM-----HQ 43

Query: 490 GHREPVYSLAFSPTGEYLASGSLDKSMHIW 519
            H   + SL  S   EY +    D      
Sbjct: 44  DHSNLIVSLDNSKAQEYSSISWDDTLKVNG 73

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.0 bits (112), Expect = 1e-06
 Identities = 14/83 (16%), Positives = 32/83 (38%), Gaps = 8/83 (9%)

Query: 482 GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCW 541
            ++L +++GH + + +L  +P    L SGS D  +  WS        +      I  +  
Sbjct: 3   DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHS----NLIVSLDN 54

Query: 542 NKEGDKIAACFANHTVCVLDFRM 564
           +K  +  +  + +        + 
Sbjct: 55  SKAQEYSSISWDDTLKVNGITKH 77

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.1 bits (107), Expect = 6e-06
 Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 1/45 (2%)

Query: 201 SFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTI 245
           S + P   +  L  H   V    W    + L S   D+  + W +
Sbjct: 243 SVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.4 bits (100), Expect = 4e-05
 Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 1/94 (1%)

Query: 294 SYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT-EEWKQ 352
           S + +   W+        +S       + +   + D + TGS D    ++ VK   +  +
Sbjct: 193 SREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK 252

Query: 353 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKI 386
               H     ++ W    +  +S  D  I    +
Sbjct: 253 ALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV 286

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 89.0 bits (219), Expect = 6e-20
 Identities = 34/333 (10%), Positives = 84/333 (25%), Gaps = 38/333 (11%)

Query: 210 TILEGHTSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVK 268
           + +            +P         +         +    +   A              
Sbjct: 33  SCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS----------- 81

Query: 269 GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTL-----SKHKGPIFSLK 323
               E  + + +   + +G  +       Q                      +       
Sbjct: 82  SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF 141

Query: 324 WNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYV 383
              +  YL+  + D +  V          + +  +G         N +    S  +++Y 
Sbjct: 142 PMPRQVYLMRAADDGSLYVAG----PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYF 197

Query: 384 CKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK-YVHDLREHSK 442
                 R   +           ++       A+          ++K  K +  +  + ++
Sbjct: 198 WPHQSPRHEFSMLYT-----IARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTE 252

Query: 443 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSP 502
             +T   SP                   +  +  +D++  KL+ + N      Y +AF  
Sbjct: 253 LYFTGLRSPKDP---------NQIYGVLN-RLAKYDLKQRKLIKAAN-LDHTYYCVAFDK 301

Query: 503 TGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG 535
            G+ L  G     + +++    + VK     GG
Sbjct: 302 KGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGG 334

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 62.4 bits (150), Expect = 3e-11
 Identities = 29/284 (10%), Positives = 63/284 (22%), Gaps = 41/284 (14%)

Query: 317 GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP---TLDVDWRNNVSFA 373
           GP          +Y++  +      V DV ++   +           T  +   N  ++ 
Sbjct: 1   GPALK----AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYV 56

Query: 374 TSSTDNMIYVCKIGENRPIK------TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 427
            ++    IY   +   +                 +      P G  + +  +       +
Sbjct: 57  LNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH 116

Query: 428 MKQDKYVHDLREHS--KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLL 485
                   ++   +   E   +R  P              +       +   DV+ GK  
Sbjct: 117 YVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYT 176

Query: 486 YSLNGHREP-------------------------VYSLAFSPTGEYLASGSLDKSMHIWS 520
            +L                                    F    +  A+  L        
Sbjct: 177 VALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 236

Query: 521 LKEGKIVKTYTGNGGIFEVCWNKEG-DKIAACFANHTVCVLDFR 563
           LK GK       +         +   D        + +   D +
Sbjct: 237 LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLK 280

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 50.5 bits (119), Expect = 2e-07
 Identities = 7/70 (10%), Positives = 18/70 (25%), Gaps = 3/70 (4%)

Query: 498 LAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKI-AACFAN 554
            A     EY+   +   ++H+  +    + K+       G        +           
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 555 HTVCVLDFRM 564
             +  +D   
Sbjct: 62  GDIYGIDLDT 71

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 47.8 bits (112), Expect = 2e-06
 Identities = 17/147 (11%), Positives = 36/147 (24%), Gaps = 17/147 (11%)

Query: 215 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEK 274
            +       +       A+           +  G                K       + 
Sbjct: 207 FSMLYTIARFKDDKQDPATADLLYGYLSVDLKTG----------------KTHTQEFADL 250

Query: 275 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTG 334
           ++   T   + +      G  +  A+       L           + + ++KKGD L  G
Sbjct: 251 TELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAA-NLDHTYYCVAFDKKGDKLYLG 309

Query: 335 SCDKTAIVWDVKTEEWKQQFEFHSGPT 361
                  V++  T E  +  +   G  
Sbjct: 310 GTFNDLAVFNPDTLEKVKNIKLPGGDM 336

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 86.4 bits (212), Expect = 5e-19
 Identities = 36/353 (10%), Positives = 86/353 (24%), Gaps = 50/353 (14%)

Query: 219 VCACAWSPAGSLL-----ASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNE 273
               A +P    +     A  +  +   +     G   G    G L   V+         
Sbjct: 4   RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVV--------- 54

Query: 274 KSKDVTTLDW-NGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKG--- 328
            + D + +   +   + +A G       ++          +     P F +         
Sbjct: 55  -ADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSL 113

Query: 329 ------DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIY 382
                       S      V D++ + +K+  +        +      +F     D  + 
Sbjct: 114 TPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCY--HIFPTAPDTFFMHCRDGSLA 171

Query: 383 VCKIGENRPIK------TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK---- 432
               G     +           +  +N   +      L   +        ++        
Sbjct: 172 KVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFL 231

Query: 433 --------YVHDLREHSKEIYTIRWSPTGSGTNNPNQQ-LILASASFDSTVKLWDVELGK 483
                                 + +            Q       +    V + D + G+
Sbjct: 232 PAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE 291

Query: 484 LLYSLNGHREPVYSLAFSPTGEYL--ASGSLDKSMHIWSLKEGKIVKTYTGNG 534
            L         + S+  S   + L  A  + DK+++I   + G+ +++    G
Sbjct: 292 RLAKFEMGH-EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLG 343

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 74.8 bits (182), Expect = 4e-15
 Identities = 35/321 (10%), Positives = 73/321 (22%), Gaps = 57/321 (17%)

Query: 223 AWSPAGSLLA----------SGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTN 272
             +  GS +A           G       ++                    ++       
Sbjct: 53  VVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTA----------DIELPDAPRF 102

Query: 273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL 332
                        +G  L    +     +   + + K        P     +    D   
Sbjct: 103 LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFF 162

Query: 333 TGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF-------ATSSTDNMIYV-- 383
               D +       TE   +          D    N+ ++          +    I+   
Sbjct: 163 MHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQID 222

Query: 384 CKIGENRPIKTFAGHQGEVNCVKWDP--------------------TGSLLASCSDDVTA 423
              G+ + +              W P                            +     
Sbjct: 223 LSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFV 282

Query: 424 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 483
            + + K  + +    E   EI +I  S          + L+ A ++ D T+ + D E G+
Sbjct: 283 VVLDAKTGERLAKF-EMGHEIDSINVSQDE-------KPLLYALSTGDKTLYIHDAESGE 334

Query: 484 LLYSLNGHREPVYSLAFSPTG 504
            L S+N        +  +  G
Sbjct: 335 ELRSVNQLGHGPQVITTADMG 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.3 bits (108), Expect = 6e-06
 Identities = 11/97 (11%), Positives = 28/97 (28%), Gaps = 13/97 (13%)

Query: 466 ASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLA----------SGSLDKS 515
           A  +  +   + D E G+++  ++G   P  +   +  G ++A           G     
Sbjct: 22  AHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDY 79

Query: 516 MHIWSLKEGKIVKT-YTGNGGIFEVCWNKEGDKIAAC 551
           + ++              +   F V        +   
Sbjct: 80  VEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPD 116

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 84.9 bits (208), Expect = 1e-18
 Identities = 27/326 (8%), Positives = 74/326 (22%), Gaps = 34/326 (10%)

Query: 212 LEGHTSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGR 270
           +            +P G    A+ +   +     +  G + G          V       
Sbjct: 29  IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAA 88

Query: 271 TNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDY 330
            +   K +   +      L        +  ++      +    +    I  L W + G  
Sbjct: 89  LSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSK 148

Query: 331 LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR 390
           L     D    V D +     +     S         + ++       +           
Sbjct: 149 LYGLGRDL--HVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESS----------- 195

Query: 391 PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH-DLREHSKEIYTIRW 449
                                      +        +++  +    ++R      ++   
Sbjct: 196 -------GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAV 248

Query: 450 SPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS 509
           +P  +            +    + ++ +D+E    +  +       YS+  S  G  +  
Sbjct: 249 NPAKT-----------RAFGAYNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWL 296

Query: 510 GSLDKSMHIWSLKEGKIVKTYTGNGG 535
           G     +  +  +  +        G 
Sbjct: 297 GGALGDLAAYDAETLEKKGQVDLPGN 322

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 76.8 bits (187), Expect = 7e-16
 Identities = 27/307 (8%), Positives = 72/307 (23%), Gaps = 36/307 (11%)

Query: 289 LLATGSYDGQARIW--STNGDLK-CTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWD 344
            +   +   +  +         K  T++              G     T +  ++ +  D
Sbjct: 3   YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62

Query: 345 VKTEEWKQQFEFHSGPT-----------------LDVDWRNNVSFATSSTDNMIYVCKIG 387
           + T E   + +  +                       +    +                 
Sbjct: 63  LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA 122

Query: 388 ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY-- 445
           E    +       ++  + W   GS L     D+               ++    E Y  
Sbjct: 123 ETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQ 182

Query: 446 --TIRWSPTGSGTNN--------PNQQLILASASFDSTVKLWDVELGKLLY-SLNGHREP 494
              +        +                    ++ + +   D+E G++    +      
Sbjct: 183 PDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVF 242

Query: 495 VYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN 554
            +S A +P             +  + L++   +K        + V  + +G  +    A 
Sbjct: 243 YFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGAL 300

Query: 555 HTVCVLD 561
             +   D
Sbjct: 301 GDLAAYD 307

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 50.2 bits (118), Expect = 3e-07
 Identities = 25/267 (9%), Positives = 59/267 (22%), Gaps = 32/267 (11%)

Query: 329 DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP----TLDVDWRNNVSFATSSTDNMIYVC 384
           DY+L  +     +V D +     +               V     +++AT +    +   
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 385 KIGENRPIKTFAGHQGE-----VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 439
            +     +        E     +      P G  LA     V  ++ + +       L +
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121

Query: 440 -----------------------HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKL 476
                                     ++Y +                     S+++    
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYA 181

Query: 477 WDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGI 536
               L       +               +     +    +    L+ G++         +
Sbjct: 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV 241

Query: 537 FEVCWNKEGDKIAACFANHTVCVLDFR 563
           F         K  A  A + +   D  
Sbjct: 242 FYFSTAVNPAKTRAFGAYNVLESFDLE 268

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.6 bits (101), Expect = 3e-05
 Identities = 12/153 (7%), Positives = 28/153 (18%), Gaps = 1/153 (0%)

Query: 214 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNE 273
              ++    A           +         I                L    +  R   
Sbjct: 178 ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR 237

Query: 274 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLT 333
                                       +    +            +S+  +  G  +  
Sbjct: 238 IMDVFYF-STAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWL 296

Query: 334 GSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 366
           G        +D +T E K Q +     ++ +  
Sbjct: 297 GGALGDLAAYDAETLEKKGQVDLPGNASMSLAS 329

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 77.3 bits (189), Expect = 7e-16
 Identities = 20/327 (6%), Positives = 60/327 (18%), Gaps = 65/327 (19%)

Query: 223 AWSPAG----------SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTN 272
               +G          +  A G       ++              P+  + L      + 
Sbjct: 71  VAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL--------PIADIELPDAPRFSV 122

Query: 273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYL 331
                +     +    LL        A   S                             
Sbjct: 123 GPRVHIIGNCASSA-CLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAA---ATH 178

Query: 332 LTGSCDKTAIVWDVKTEEWK------QQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVC 384
             GSC  +    D+            Q     +  +         +     ++  +    
Sbjct: 179 YLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDI 238

Query: 385 KIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEI 444
                       G++       +   G  + +   +    +    +              
Sbjct: 239 PAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSC--------- 289

Query: 445 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG 504
                                   +           +G+    +  +     ++  +  G
Sbjct: 290 -----------------------LAAAENTSSVTASVGQTSGPI-SNGHDSDAIIAAQDG 325

Query: 505 EYL--ASGSLDKSMHIWSLKEGKIVKT 529
                A+ +  + + I+     +   +
Sbjct: 326 ASDNYANSAGTEVLDIYDAASDQDQSS 352

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.3 bits (85), Expect = 0.004
 Identities = 13/119 (10%), Positives = 26/119 (21%), Gaps = 23/119 (19%)

Query: 464 ILASASFDSTVKLW--DVELGKLLYSLNGHREPVYSLAFSPTGEYLA----------SGS 511
           I   A F  T + W      G  L    G    +       +G   A           G 
Sbjct: 36  ITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSL--AVAGHSGSDFALASTSFARSAKGK 93

Query: 512 LDKSMHIWSLKEGKIVKT--------YTGNGGIFEVCWNKEGDKIAAC-FANHTVCVLD 561
               + ++       +          ++    +  +        +    F +     L 
Sbjct: 94  RTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLS 152

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 65.3 bits (157), Expect = 4e-12
 Identities = 26/277 (9%), Positives = 63/277 (22%), Gaps = 41/277 (14%)

Query: 292 TGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEE 349
             S      +    +  +  T+     P      +  G  +    +      + D  T  
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVGSNP-MGAVISPDGTKVYVANAHSNDVSIIDTATNN 65

Query: 350 WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP 409
                   S P       +      ++  +         +  +            +   P
Sbjct: 66  VIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSP 125

Query: 410 TGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP------------------ 451
            G  L   ++            K V +     +    I  +P                  
Sbjct: 126 DGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVI 185

Query: 452 ------------------TGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHRE 493
                               +      +  +     + +TV + D    K+   +    +
Sbjct: 186 DTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD 245

Query: 494 PVYSLAFSPTGEYL-ASGSLDKSMHIWSLKEGKIVKT 529
           P   +A +P G+ +  + S   ++ +       I  T
Sbjct: 246 P-AGIAVTPDGKKVYVALSFCNTVSVIDTATNTITAT 281

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 51.8 bits (122), Expect = 8e-08
 Identities = 35/282 (12%), Positives = 81/282 (28%), Gaps = 29/282 (10%)

Query: 217 SEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKS 275
           S       SP G+ +  + +  +   I   A                    +       S
Sbjct: 32  SNPMGAVISPDGTKVYVANAHSNDVSIIDTATN----------------NVIATVPAGSS 75

Query: 276 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGS 335
                +  +G+   +   +    + I +T+  +  T+   K P+            +T +
Sbjct: 76  PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNN 135

Query: 336 CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF 395
            DKT  V +  T+           P       +      ++ D+M           +   
Sbjct: 136 GDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDT 195

Query: 396 AGHQGEVNCVKWDPTGSLLA---SCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT 452
              +   + +  +P G+            T  + +   +K    +     +   I  +P 
Sbjct: 196 VKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPD 254

Query: 453 GSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREP 494
           G        + +  + SF +TV + D     +  ++   + P
Sbjct: 255 G--------KKVYVALSFCNTVSVIDTATNTITATMAVGKNP 288

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 51.8 bits (122), Expect = 9e-08
 Identities = 12/99 (12%), Positives = 30/99 (30%), Gaps = 2/99 (2%)

Query: 467 SASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYL-ASGSLDKSMHIWSLKEGK 525
           + S    + + DV   K+  ++     P      SP G  +  + +    + I       
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVGSNP-MGAVISPDGTKVYVANAHSNDVSIIDTATNN 65

Query: 526 IVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFRM 564
           ++ T         V  + +G ++       +   +    
Sbjct: 66  VIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTT 104

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 58.7 bits (141), Expect = 9e-10
 Identities = 37/282 (13%), Positives = 81/282 (28%), Gaps = 18/282 (6%)

Query: 273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYL 331
           E        DW+ E     T    GQ  +   +  ++K  L          + +  G YL
Sbjct: 18  EDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAV-HISRLSASGRYL 76

Query: 332 LTGSCDKTAIVWDVKTEEWKQQFE-------FHSGPTLDVDWRNNVSFATSSTDNMIYVC 384
                D    + D+  +E     E            +    W +  + A +       + 
Sbjct: 77  FVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIM 136

Query: 385 KIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVTAKIWNMKQDKYVHDLREHSKE 443
                 P K  +      +  ++ P   + A   S      I N+K+   +  +      
Sbjct: 137 DGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN 196

Query: 444 IYTIRWSPTGS----GTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLA 499
                          G  + + +  + +A+  + + + D + GKL+ ++           
Sbjct: 197 NLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV-AIEDTGGQTPHPG 255

Query: 500 FSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCW 541
                 +   G +  + H+    +  +    T   G  +  W
Sbjct: 256 RGANFVHPTFGPVWATSHMG---DDSVALIGTDPEGHPDNAW 294

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 54.0 bits (129), Expect = 2e-08
 Identities = 17/121 (14%), Positives = 35/121 (28%), Gaps = 8/121 (6%)

Query: 451 PTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASG 510
           PT    +   + L   +      + L D    ++   L+      +    S +G YL   
Sbjct: 21  PTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAV-HISRLSASGRYLFVI 79

Query: 511 SLDKSMHIWSLKEGK--IVKTYTGNGGIFEVCWNKEGDK-----IAACFANHTVCVLDFR 563
             D  +++  L   +   V           +  +K         IA  +      ++D  
Sbjct: 80  GRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE 139

Query: 564 M 564
            
Sbjct: 140 T 140

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 56.5 bits (135), Expect = 4e-09
 Identities = 16/121 (13%), Positives = 32/121 (26%), Gaps = 8/121 (6%)

Query: 451 PTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASG 510
           P     +     L   +      + L D +  K++  ++      +    S +G YL   
Sbjct: 21  PKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAV-HISRMSASGRYLLVI 79

Query: 511 SLDKSMHIWSLKEGKIVKTYT------GNGGIFEVCWNKEGDK-IAACFANHTVCVLDFR 563
             D  + +  L   +  K                     E    IA  +      ++D  
Sbjct: 80  GRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE 139

Query: 564 M 564
            
Sbjct: 140 T 140

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 53.8 bits (128), Expect = 3e-08
 Identities = 36/279 (12%), Positives = 73/279 (26%), Gaps = 27/279 (9%)

Query: 280 TLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK 338
             D +       T    GQ  +   +   +   +          + +  G YLL    D 
Sbjct: 25  LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAV-HISRMSASGRYLLVIGRDA 83

Query: 339 TAIVWDVKTEEWKQQFEFHSGP-------TLDVDWRNNVSFATSSTDNMIYVCKIGENRP 391
              + D+  +E  +  E   G        +    + +  + A +       +       P
Sbjct: 84  RIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP 143

Query: 392 IKTFAGHQGEVNCVKWDPTGSL-LASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWS 450
            +  +     V+   + P   +     S +    I N+K+   V  +     +  T+   
Sbjct: 144 KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI 203

Query: 451 PTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASG 510
                         LA   +DS+ + +               +     A    G+    G
Sbjct: 204 GAAPF---------LADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPG 254

Query: 511 SLDKSMH--------IWSLKEGKIVKTYTGNGGIFEVCW 541
                +H           L +G I    T      +  W
Sbjct: 255 RGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAW 293

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 53.8 bits (128), Expect = 3e-08
 Identities = 45/390 (11%), Positives = 95/390 (24%), Gaps = 72/390 (18%)

Query: 209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQ----NGPLNVLV- 263
           V +++     V     S +G  L     D+   +  +        A+        +V   
Sbjct: 55  VKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESS 113

Query: 264 --------------------------LKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDG 297
                                         K   + +   V T  ++ E  + A  +   
Sbjct: 114 KFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHE 173

Query: 298 QARIWSTNGDLKCTLSKHKGPIFSLKWNK--KGDYLLTGSCDKTAIVWDVKTEEWKQQFE 355
                    +    L  +   I +L         +L  G  D +   +        +   
Sbjct: 174 HPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAV 233

Query: 356 FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA 415
                      ++    A                R         G V        GS+  
Sbjct: 234 ID--------SKDRRLSALVDVGKT-----PHPGRGANFVHPKYGPVWSTSHLGDGSISL 280

Query: 416 SCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVK 475
             +D      +  K+   V +L+        I+  P    ++          A    +V 
Sbjct: 281 IGTDPKNHPQYAWKK---VAELQGQGGGSLFIKTHP--KSSHLYVDTTFNPDARISQSVA 335

Query: 476 LWDVELGKLLYSLNGHREP---------VYSLAFSPTGEYL-----ASGSLDKSMHIWSL 521
           ++D++     Y +    E          V    ++  G+ +        +   ++ +   
Sbjct: 336 VFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDD 395

Query: 522 KEGKIVKTYTGNG-----GIFEVCWNKEGD 546
           K  K+             G F V +N + D
Sbjct: 396 KTLKLKAVVKDPRLITPTGKFNV-YNTQHD 424

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 47.5 bits (111), Expect = 2e-06
 Identities = 33/341 (9%), Positives = 94/341 (27%), Gaps = 40/341 (11%)

Query: 225 SPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN 284
           S   ++  +        +W +           G L +        +  +    V  +  +
Sbjct: 1   SLKQTVYIASPESQQIHVWNLN--------HEGALTLT-------QVVDVPGQVQPMVVS 45

Query: 285 GEG-TLLATGSYDGQARIWSTNGD----LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK- 338
            +   L      + +   +    D         S   G +  +  + +G ++  GS +  
Sbjct: 46  PDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAG 105

Query: 339 --TAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA 396
             +    +                    +   +             +C    +      A
Sbjct: 106 NVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA 165

Query: 397 GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE---HSKEIYTIRWSPTG 453
               EV  V+      ++   ++     +  +     V +L++   + + + T+   P  
Sbjct: 166 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPEN 225

Query: 454 SGTNNP--------NQQLILASASFDSTVKLWDVELGKLLYSLNGHREP---VYSLAFSP 502
                         + + + A     S + ++ V     + S  G +             
Sbjct: 226 FSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDH 285

Query: 503 TGEYL-ASGSLDKSMHIWSL--KEGKIVKTYTGNGGIFEVC 540
           +G+YL A+G     + ++ +  ++G + +      G   + 
Sbjct: 286 SGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMW 326

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 470

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 42.0 bits (97), Expect = 2e-04
 Identities = 31/276 (11%), Positives = 64/276 (23%), Gaps = 22/276 (7%)

Query: 272 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTL----SKHKGPIFSLKWNKK 327
           + +   +    ++ E             +  + N  +K  +    S       +      
Sbjct: 192 DTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITA 251

Query: 328 GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIG 387
              +L G      + W  +     Q        ++      +    +S   N +   +  
Sbjct: 252 PASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYD---ESSGRWNCLVARQHI 308

Query: 388 ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 447
           E          +        D         +++    I   + DK               
Sbjct: 309 EMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIG 368

Query: 448 RWSP-------TGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAF 500
             +          +          L         K+       L   LN  R   YS++F
Sbjct: 369 IEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTC-----LSCELNPERCQYYSVSF 423

Query: 501 SPTGEYLA---SGSLDKSMHIWSLKEGKIVKTYTGN 533
           S   +Y     SG       + S    K ++    N
Sbjct: 424 SKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDN 459

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 48/342 (14%), Positives = 85/342 (24%), Gaps = 68/342 (19%)

Query: 229 SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGR----TNEKSKDVTTLDWN 284
           S    G  + +  I        NG     P   +      G+     ++ +  V  +   
Sbjct: 44  SATGWGITNESKEILGGDQQYLNGDCH-HPHISMTDGRYDGKYLFINDKANTRVARIR-- 100

Query: 285 GEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD 344
                L     D    I +        L K           K   Y+   +        D
Sbjct: 101 -----LDIMKTDKITHIPNVQAIHGLRLQK---------VPKTN-YVFCNAEFVIPQPND 145

Query: 345 VKTEEWKQQFEFHS---GPTLDVDWRNNVS---------------FATSSTDNMIYVCKI 386
                    +   +     T+DV W+  V                 +T            
Sbjct: 146 GTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVD-LA 204

Query: 387 GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT 446
           G  R  + +               G+        V            V D R  S+    
Sbjct: 205 GTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVP-----------VVDGRGESEFTRY 253

Query: 447 IR--WSPTGSGTNNPNQQLILASASFDSTVKLWDVEL------GKLLYSLNGHREP---- 494
           I    +P G  T+ P+ +  +A+     TV +  ++        K+        EP    
Sbjct: 254 IPVPKNPHGLNTS-PDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGL 312

Query: 495 -VYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG 535
                 F   G    +  +D  +  W++     +K Y G+  
Sbjct: 313 GPLHTTFDGRGNAYTTLFIDSQVCKWNI--ADAIKHYNGDRV 352

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 40.7 bits (95), Expect = 4e-04
 Identities = 30/252 (11%), Positives = 64/252 (25%), Gaps = 56/252 (22%)

Query: 276 KDVTTLDWNGEGTLLATGSYDGQ--ARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLT 333
            ++   D +  G    +  Y+ +    +  T  + +  +             K G++   
Sbjct: 176 GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERI-AAAVKAGNFKTI 234

Query: 334 GSCDKTAIVWDVKTEEWKQQFEFHSGP-TLDVDWRNNVSFATSSTDNMIYVCKIGENRPI 392
           G   K  +V      E+ +       P  L+         A       + V  I  ++  
Sbjct: 235 GD-SKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAI--DKLD 291

Query: 393 KTFAGHQGEVNCVK-------------WDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 439
             F       + +              +D  G+   +   D     WN+           
Sbjct: 292 DLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNI----------A 341

Query: 440 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLA 499
            + + Y                         +   +  DV+     Y   GH     + +
Sbjct: 342 DAIKHY--------------------NGDRVNYIRQKLDVQ-----YQP-GHNHASLTES 375

Query: 500 FSPTGEYLASGS 511
               G++L   S
Sbjct: 376 RDADGKWLVVLS 387

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 269

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 22/261 (8%), Positives = 65/261 (24%), Gaps = 18/261 (6%)

Query: 292 TGSYDGQARIWSTNGDLK--CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE 349
           T        +  ++ D      + +   P+ S  W+  G  L   +       ++     
Sbjct: 12  TNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT-------FESGRSA 64

Query: 350 WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP 409
              Q   +        +  +      S D       + +   +  +          +   
Sbjct: 65  LVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD 124

Query: 410 TGSLLA------SCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQL 463
             S            +         +   Y  ++   + +  T   S       + + + 
Sbjct: 125 GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKF 184

Query: 464 ILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD---KSMHIWS 520
           ++  +S      +   +L      +        + + +P G  +   S       +++ S
Sbjct: 185 MVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVS 244

Query: 521 LKEGKIVKTYTGNGGIFEVCW 541
                  +    +G +    W
Sbjct: 245 TDGRFKARLPATDGQVKFPAW 265

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	564
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.98
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.92
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.92
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.91
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.91
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.89
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.89
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.85
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.85
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.84
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.81
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.8
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.79
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.74
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.72
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.65
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.58
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.44
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.41
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.32
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.32
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.17
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.16
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.12
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.08
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.0
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.99
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.98
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.98
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.96
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.93
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.9
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.88
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.82
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.73
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.63
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.6
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.45
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.42
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.81
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.77
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.66
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.58
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.55
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.47
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.46
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.21
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.14
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.12
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.03
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.03
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.97
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.84
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.74
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.55
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.45
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.19
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.09
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	95.93
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.56
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	94.71
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	94.24
d1uuja_	76	Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te	94.14
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.08
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	92.63
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	92.32
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	92.22
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	92.05
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	90.02
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	89.77
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	87.45
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	86.53
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	82.91

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-42  Score=341.60  Aligned_cols=285  Identities=18%  Similarity=0.359  Sum_probs=248.9

Q ss_pred             CCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEE
Q 008467          214 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG  293 (564)
Q Consensus       214 ~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg  293 (564)
                      +|...|.|++|+|+|++||||+ ||.|+|||+.++....     ....   .    ....+...|++++|+|+|++|++|
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~-----~~~~---~----~~~~h~~~I~~v~~s~dg~~l~s~  115 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS-----PVSQ---L----DCLNRDNYIRSCKLLPDGCTLIVG  115 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS-----CSEE---E----ECSCTTSBEEEEEECTTSSEEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccc-----eeEE---e----eecCCCCcEEEEEEcCCCCEEEEe
Confidence            7999999999999999999987 8999999997653211     1111   0    112456789999999999999999


Q ss_pred             eCCCeEEEEECCC---ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCc
Q 008467          294 SYDGQARIWSTNG---DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV  370 (564)
Q Consensus       294 ~~dg~i~vw~~~~---~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (564)
                      +.||.|++|+...   .....+..|...|..+.|+|++.++++++.|+.+++||+.+++..                   
T Consensus       116 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~-------------------  176 (337)
T d1gxra_         116 GEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLV-------------------  176 (337)
T ss_dssp             ESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-------------------
T ss_pred             ecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------------------
Confidence            9999999999753   345677889999999999999999999999999999998875432                   


Q ss_pred             eEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEc
Q 008467          371 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWS  450 (564)
Q Consensus       371 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~  450 (564)
                                            ....+|...|.+++|++++..+++|+.|+.+++||+++++.+..+ .|...|.+++|+
T Consensus       177 ----------------------~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~-~~~~~i~~l~~~  233 (337)
T d1gxra_         177 ----------------------RQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYC  233 (337)
T ss_dssp             ----------------------EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEEC
T ss_pred             ----------------------ccccccccccccccccccccccccccccccccccccccceeeccc-ccccceEEEEEc
Confidence                                  344568889999999999999999999999999999999887665 478899999999


Q ss_pred             cCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q 008467          451 PTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY  530 (564)
Q Consensus       451 p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~  530 (564)
                      |++.         +|++|+.|+.|++||+++++.. ....|..+|++++|+|+|++|++|+.||.|++||+.+++.+..+
T Consensus       234 ~~~~---------~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~  303 (337)
T d1gxra_         234 PTGE---------WLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS  303 (337)
T ss_dssp             TTSS---------EEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             cccc---------ccceeccccccccccccccccc-cccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEc
Confidence            9875         7889999999999999988764 55679999999999999999999999999999999999999998


Q ss_pred             ecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          531 TGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       531 ~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      .+...|.+++|+|+|++||+|+.|+.|+|||+-
T Consensus       304 ~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl~  336 (337)
T d1gxra_         304 KESSSVLSCDISVDDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             ECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred             cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEEE
Confidence            888899999999999999999999999999973

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.3e-42  Score=331.31  Aligned_cols=295  Identities=29%  Similarity=0.491  Sum_probs=259.3

Q ss_pred             eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467          209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  288 (564)
Q Consensus       209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  288 (564)
                      ...|+||.++|++++|+|++++||||+.||+|+|||+.++...             ...    ..+...|++++|++++.
T Consensus        10 ~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~-------------~~~----~~h~~~V~~~~~~~~~~   72 (317)
T d1vyhc1          10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE-------------RTL----KGHTDSVQDISFDHSGK   72 (317)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCC-------------EEE----CCCSSCEEEEEECTTSS
T ss_pred             cEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEE-------------EEE----eCCCCcEEEEeeecccc
Confidence            4578999999999999999999999999999999999876432             111    23467899999999999


Q ss_pred             EEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcC
Q 008467          289 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR  367 (564)
Q Consensus       289 ~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  367 (564)
                      +++++..++.+.+|+.. ......+..|...+.++.|+|+++.+++++.|+.+++||++++..                 
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-----------------  135 (317)
T d1vyhc1          73 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC-----------------  135 (317)
T ss_dssp             EEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE-----------------
T ss_pred             cccccccccccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeeccccee-----------------
Confidence            99999999999999965 445566788999999999999999999999999999999887543                 


Q ss_pred             CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEE
Q 008467          368 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI  447 (564)
Q Consensus       368 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i  447 (564)
                                              +..+.+|...+.+++|+|++++|++++.|+.|++|+..+......+..|...+.++
T Consensus       136 ------------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~  191 (317)
T d1vyhc1         136 ------------------------VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI  191 (317)
T ss_dssp             ------------------------EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred             ------------------------eeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEE
Confidence                                    33456788889999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCCCC-----------CCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 008467          448 RWSPTGSGTN-----------NPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSM  516 (564)
Q Consensus       448 ~~~p~~~~~~-----------~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i  516 (564)
                      .|+|......           ......++++++.|+.|++||+.+++++.++.+|..+|.+++|+|+|++|++|+.||.|
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i  271 (317)
T d1vyhc1         192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTL  271 (317)
T ss_dssp             EECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEE
T ss_pred             EEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeE
Confidence            9998753210           11122368899999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCeEEEEEecC-CCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467          517 HIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLD  561 (564)
Q Consensus       517 ~iw~~~~~~~~~~~~~~-~~i~~~~w~~~g~~la~~~~~~~v~v~~  561 (564)
                      +|||+++++++.++.++ ..|++++|+|+|++||+|+.||+|+|||
T Consensus       272 ~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         272 RVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            99999999999999864 5799999999999999999999999996

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.1e-40  Score=331.27  Aligned_cols=300  Identities=26%  Similarity=0.413  Sum_probs=240.0

Q ss_pred             cCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEE-eeccccccCCCCeEEEEECCCCCEEE
Q 008467          213 EGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLK-HVKGRTNEKSKDVTTLDWNGEGTLLA  291 (564)
Q Consensus       213 ~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~V~~l~~s~~g~~l~  291 (564)
                      .+|++.|+|++|||+|++||+|+ |++|+||++.++................. ........+...|++++|+|+|++|+
T Consensus        59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~  137 (388)
T d1erja_          59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  137 (388)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcce
Confidence            36999999999999999999986 99999999987654221111000000000 00111224567799999999999999


Q ss_pred             EEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcC-CC
Q 008467          292 TGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR-NN  369 (564)
Q Consensus       292 sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~  369 (564)
                      +|+.||.|++|+.. +.....+.+|..+|.++.|++++..+++++.++.+++||..+.........+...+....+. +.
T Consensus       138 s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (388)
T d1erja_         138 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDG  217 (388)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTC
T ss_pred             ecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCC
Confidence            99999999999975 45667788999999999999999999999999999999999887776665555444333333 45


Q ss_pred             ceEEEEeCCCeEEEEEcCCCceeeEe-------cCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCee---------
Q 008467          370 VSFATSSTDNMIYVCKIGENRPIKTF-------AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY---------  433 (564)
Q Consensus       370 ~~~~~~~~d~~i~~~~~~~~~~~~~~-------~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~---------  433 (564)
                      ..+++++.|+.|++|+......+..+       .+|.+.|.+++|+|++++|++|+.||.|++||+.+...         
T Consensus       218 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  297 (388)
T d1erja_         218 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS  297 (388)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------------
T ss_pred             CeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccc
Confidence            67888999999999999887765544       47889999999999999999999999999999875432         


Q ss_pred             ---eeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEE------cCCC
Q 008467          434 ---VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAF------SPTG  504 (564)
Q Consensus       434 ---~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~------spdg  504 (564)
                         ......|...|.+++|+|++.         +|++|+.||+|++||+++++++.++.+|..+|+++++      +|++
T Consensus       298 ~~~~~~~~~~~~~v~~~~~s~~~~---------~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~  368 (388)
T d1erja_         298 GTCEVTYIGHKDFVLSVATTQNDE---------YILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEY  368 (388)
T ss_dssp             -CEEEEEECCSSCEEEEEECGGGC---------EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTC
T ss_pred             cceeeecccccceEEEEEECCCCC---------EEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCC
Confidence               334456888999999999875         7999999999999999999999999999999999974      6799


Q ss_pred             CEEEEEeCCCcEEEEeCC
Q 008467          505 EYLASGSLDKSMHIWSLK  522 (564)
Q Consensus       505 ~~lasgs~dg~i~iw~~~  522 (564)
                      ++|||||.||+|+||+++
T Consensus       369 ~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         369 NVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEEEEEETTSEEEEEEEE
T ss_pred             CEEEEEeCCCEEEEEeee
Confidence            999999999999999975

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1e-39  Score=317.75  Aligned_cols=277  Identities=24%  Similarity=0.382  Sum_probs=234.7

Q ss_pred             ccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeC
Q 008467          216 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY  295 (564)
Q Consensus       216 ~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~  295 (564)
                      .+.+.+++++|+|+.||.++ ++.+.+|++.+....             ..    ...|...|++++|+|+|++|++|+.
T Consensus        17 r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~-------------~~----~~~H~~~v~~~~~sp~g~~latg~~   78 (311)
T d1nr0a1          17 RGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDT-------------EI----YTEHSHQTTVAKTSPSGYYCASGDV   78 (311)
T ss_dssp             TTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCC-------------EE----ECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCcee-------------EE----EcCCCCCEEEEEEeCCCCeEecccc
Confidence            34566789999999999986 567999998765321             11    1245678999999999999999999


Q ss_pred             CCeEEEEECCCc---eeEeecCCCCCEEEEEeCCCCCEEEEeeCC--CcEEEEECCCcceeEEEeecccCeEEEEcCCCc
Q 008467          296 DGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTGSCD--KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV  370 (564)
Q Consensus       296 dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (564)
                      ||.|+||+....   ....+..|.++|.+++|+|++++|++++.+  +.+++|++.+++                     
T Consensus        79 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~---------------------  137 (311)
T d1nr0a1          79 HGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT---------------------  137 (311)
T ss_dssp             TSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC---------------------
T ss_pred             CceEeeeeeeccccccccccccccCcccccccccccccccccccccccccccccccccc---------------------
Confidence            999999997643   345678999999999999999999998764  568888877653                     


Q ss_pred             eEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCE-EEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEE
Q 008467          371 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSL-LASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW  449 (564)
Q Consensus       371 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~-las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~  449 (564)
                                          ++..+.+|...|++++|+|++++ |++|+.|+.|++||+++.+....+..|..+|.++.|
T Consensus       138 --------------------~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~  197 (311)
T d1nr0a1         138 --------------------SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRY  197 (311)
T ss_dssp             --------------------BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEE
T ss_pred             --------------------ccccccccccccccccccccceeeeccccccccccccccccccccccccccccccccccc
Confidence                                33456789999999999999985 889999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEe-------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 008467          450 SPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN-------GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK  522 (564)
Q Consensus       450 ~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~  522 (564)
                      +|++.         +|++++.|+.|++||+.++..+..+.       +|..+|++++|+|+|++|++|+.||.|+|||++
T Consensus       198 ~p~~~---------~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~  268 (311)
T d1nr0a1         198 NPDGS---------LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA  268 (311)
T ss_dssp             CTTSS---------EEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             Ccccc---------ccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECC
Confidence            99875         78999999999999999988877653       578899999999999999999999999999999


Q ss_pred             CCeEEEEEecCCC----EEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467          523 EGKIVKTYTGNGG----IFEVCWNKEGDKIAACFANHTVCVLDF  562 (564)
Q Consensus       523 ~~~~~~~~~~~~~----i~~~~w~~~g~~la~~~~~~~v~v~~~  562 (564)
                      ++++++++..+..    +.++.|+  ++.|++++.||.|.+||.
T Consensus       269 t~~~~~~l~~~~~~~~~~~~~~~~--~~~l~s~s~dG~i~~wd~  310 (311)
T d1nr0a1         269 TLKVEKTIPVGTRIEDQQLGIIWT--KQALVSISANGFINFVNP  310 (311)
T ss_dssp             TTEEEEEEECCSSGGGCEEEEEEC--SSCEEEEETTCCEEEEET
T ss_pred             CCcEEEEEECCCCccceEEEEEec--CCEEEEEECCCEEEEEeC
Confidence            9999999876533    4455554  567999999999999995

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.9e-38  Score=311.29  Aligned_cols=286  Identities=24%  Similarity=0.419  Sum_probs=245.8

Q ss_pred             ceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC
Q 008467          208 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG  287 (564)
Q Consensus       208 ~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g  287 (564)
                      ..++|+||+++|++++|+|++++||||+.||+|+|||+.++..             +...    ..+...|++++|+|++
T Consensus        47 ~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~-------------~~~~----~~~~~~v~~v~~~~~~  109 (340)
T d1tbga_          47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK-------------VHAI----PLRSSWVMTCAYAPSG  109 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE-------------EEEE----ECSCSCEEEEEECTTS
T ss_pred             eeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeeccccee-------------EEEE----ecccccEEeeEeeccc
Confidence            3468999999999999999999999999999999999876532             1111    2346789999999999


Q ss_pred             CEEEEEeCCCeEEEEECCC-----ceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeE
Q 008467          288 TLLATGSYDGQARIWSTNG-----DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL  362 (564)
Q Consensus       288 ~~l~sg~~dg~i~vw~~~~-----~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~  362 (564)
                      .++++|+.|+.+++|+...     .....+.+|........+.. +..+..+..|.....|+............+...+.
T Consensus       110 ~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (340)
T d1tbga_         110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVM  188 (340)
T ss_dssp             SEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEE-TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEE
T ss_pred             eeeeeecccceeecccccccccccccceeccccccccccccccc-ccccccccccccccccccccccccccccccceeEe
Confidence            9999999999999998643     23456777888777665544 56788888999999999887776666666666666


Q ss_pred             EEEcC-CCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeec--cc
Q 008467          363 DVDWR-NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL--RE  439 (564)
Q Consensus       363 ~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~--~~  439 (564)
                      ...+. ....+++++.|+.|++|++.+.+++..+.+|.+.|++++|+|++++|++|+.||.|++|+++....+..+  ..
T Consensus       189 ~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~  268 (340)
T d1tbga_         189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN  268 (340)
T ss_dssp             EEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTT
T ss_pred             eeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccccccccc
Confidence            66554 4567788999999999999999999999999999999999999999999999999999999988876654  45


Q ss_pred             ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 008467          440 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIW  519 (564)
Q Consensus       440 ~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw  519 (564)
                      +...|.+++|+|++.         +|++|+.||+|++||+.+++++.++.+|..+|++++|+|+|++||+||.||.|+||
T Consensus       269 ~~~~i~~~~~s~~~~---------~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iW  339 (340)
T d1tbga_         269 IICGITSVSFSKSGR---------LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW  339 (340)
T ss_dssp             CCSCEEEEEECSSSC---------EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             ccCceEEEEECCCCC---------EEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEe
Confidence            667899999999875         78999999999999999999999999999999999999999999999999999999


Q ss_pred             e
Q 008467          520 S  520 (564)
Q Consensus       520 ~  520 (564)
                      |
T Consensus       340 d  340 (340)
T d1tbga_         340 N  340 (340)
T ss_dssp             C
T ss_pred             C
Confidence            7

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.3e-38  Score=315.52  Aligned_cols=310  Identities=20%  Similarity=0.359  Sum_probs=252.7

Q ss_pred             EEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC-CceeE
Q 008467          232 ASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKC  310 (564)
Q Consensus       232 asgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~  310 (564)
                      +.+..++...+|+......        ... .+.+    ..+|...|+|++|||+|++|++|+ |+.|+||+.. +....
T Consensus        32 ~~~~~~~~~~~~~~~~~~~--------~~~-~l~~----~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~   97 (388)
T d1erja_          32 LKKQTNDYYILYNPALPRE--------IDV-ELHK----SLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVA   97 (388)
T ss_dssp             SEEECSSCEEEECTTSCCC--------EEE-EEEE----EEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEE
T ss_pred             cccCCCCcEEEeCCCCCcc--------eee-eeEe----eCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEe
Confidence            4566778888888543221        111 1111    124678899999999999999987 8999999975 33333


Q ss_pred             ee------------------cCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCC-ce
Q 008467          311 TL------------------SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VS  371 (564)
Q Consensus       311 ~~------------------~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~  371 (564)
                      .+                  ..|...|.+++|+|++++|++|+.||+|++||..+++....+..|...+..+.|..+ ..
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  177 (388)
T d1erja_          98 RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK  177 (388)
T ss_dssp             EECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred             eecccccccccccccccccccCCCCCEEEEEECCCCCcceeccccccccccccccccccccccccccccccccccccccc
Confidence            32                  356778999999999999999999999999999999999888889999999988654 56


Q ss_pred             EEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeec-------ccccccE
Q 008467          372 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL-------REHSKEI  444 (564)
Q Consensus       372 ~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~-------~~~~~~i  444 (564)
                      +++++.++.+++|+............+...+..+.+.+++++|++|+.|+.|++|+..++..+..+       ..|...|
T Consensus       178 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v  257 (388)
T d1erja_         178 LVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSV  257 (388)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCE
T ss_pred             ccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCE
Confidence            788899999999999988887777766666655555668999999999999999999988766544       3578899


Q ss_pred             EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe------------EEEEEeCCCCCEEEEEEcCCCCEEEEEeC
Q 008467          445 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK------------LLYSLNGHREPVYSLAFSPTGEYLASGSL  512 (564)
Q Consensus       445 ~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~------------~~~~~~~h~~~i~~~~~spdg~~lasgs~  512 (564)
                      +++.|+|++.         +|++|+.||.|++||++++.            +......|...|.+++|+|+|++|++|+.
T Consensus       258 ~~l~~s~~~~---------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~  328 (388)
T d1erja_         258 YSVVFTRDGQ---------SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK  328 (388)
T ss_dssp             EEEEECTTSS---------EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET
T ss_pred             EEEEECCCCC---------EEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeC
Confidence            9999999875         78999999999999987643            33455678899999999999999999999


Q ss_pred             CCcEEEEeCCCCeEEEEEecC-CCEEEEE------EccCCCEEEEEEcCCcEEEEEeeC
Q 008467          513 DKSMHIWSLKEGKIVKTYTGN-GGIFEVC------WNKEGDKIAACFANHTVCVLDFRM  564 (564)
Q Consensus       513 dg~i~iw~~~~~~~~~~~~~~-~~i~~~~------w~~~g~~la~~~~~~~v~v~~~~~  564 (564)
                      ||.|++||+++++++.++.++ +.|.+++      |+|+|++||+|+.||+|+||++++
T Consensus       329 dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~k  387 (388)
T d1erja_         329 DRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  387 (388)
T ss_dssp             TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             CCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeeee
Confidence            999999999999999999875 4688876      567999999999999999999974

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.2e-38  Score=318.35  Aligned_cols=285  Identities=17%  Similarity=0.258  Sum_probs=228.7

Q ss_pred             cceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC
Q 008467          217 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD  296 (564)
Q Consensus       217 ~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d  296 (564)
                      .+|+|++|||+|++||+|+.|+.|+||++.++..           .....+    .+|..+|++++|+|++++|++|+.|
T Consensus         8 ~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~-----------~~~~~l----~gH~~~V~~l~fsp~~~~l~s~s~D   72 (371)
T d1k8kc_           8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-----------VQVHEL----KEHNGQVTGVDWAPDSNRIVTCGTD   72 (371)
T ss_dssp             SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-----------EEEEEE----ECCSSCEEEEEEETTTTEEEEEETT
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCE-----------EEEEEe----cCCCCCEEEEEECCCCCEEEEEECC
Confidence            6799999999999999999999999999865421           111222    2456789999999999999999999


Q ss_pred             CeEEEEECCCc---eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEE
Q 008467          297 GQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA  373 (564)
Q Consensus       297 g~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (564)
                      +.|+||+....   ....+.+|..+|++++|+|++++|++|+.|+++++|++........                    
T Consensus        73 ~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~--------------------  132 (371)
T d1k8kc_          73 RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWV--------------------  132 (371)
T ss_dssp             SCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEE--------------------
T ss_pred             CeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeeccccccc--------------------
Confidence            99999997643   2335678999999999999999999999999999998765432111                    


Q ss_pred             EEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCC------------------eeee
Q 008467          374 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD------------------KYVH  435 (564)
Q Consensus       374 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~------------------~~~~  435 (564)
                                       ......+|...|.+++|+|++++|++|+.|++|++|+....                  ..+.
T Consensus       133 -----------------~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (371)
T d1k8kc_         133 -----------------CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMF  195 (371)
T ss_dssp             -----------------EEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEE
T ss_pred             -----------------ccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeee
Confidence                             11234568889999999999999999999999999997542                  3455


Q ss_pred             ecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCc
Q 008467          436 DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKS  515 (564)
Q Consensus       436 ~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~  515 (564)
                      ....|...|++++|+|++.         +|++++.|++|++||+..++.+..+..|..+|.+++|+|||++||+|+ |+.
T Consensus       196 ~~~~~~~~v~~~~~s~~g~---------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~  265 (371)
T d1k8kc_         196 ESSSSCGWVHGVCFSANGS---------RVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCF  265 (371)
T ss_dssp             ECCCCSSCEEEEEECSSSS---------EEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET-TSS
T ss_pred             eccCccCcEEEEEeecccc---------cccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEc-CCc
Confidence            6678889999999999875         789999999999999999999999999999999999999999888765 666


Q ss_pred             EEEEeC--CCCeEEEEE----------------------------------------ecCCCEEEEEEccCC----CEEE
Q 008467          516 MHIWSL--KEGKIVKTY----------------------------------------TGNGGIFEVCWNKEG----DKIA  549 (564)
Q Consensus       516 i~iw~~--~~~~~~~~~----------------------------------------~~~~~i~~~~w~~~g----~~la  549 (564)
                      +++|..  ..+.+....                                        .+.+.|.++++.+.+    ..++
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~  345 (371)
T d1k8kc_         266 PVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFC  345 (371)
T ss_dssp             CEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEE
T ss_pred             eEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEE
Confidence            666554  333221100                                        012358899997755    4699


Q ss_pred             EEEcCCcEEEEEee
Q 008467          550 ACFANHTVCVLDFR  563 (564)
Q Consensus       550 ~~~~~~~v~v~~~~  563 (564)
                      +|+.||.|+|||++
T Consensus       346 T~g~Dg~v~iW~~~  359 (371)
T d1k8kc_         346 TTGMDGGMSIWDVR  359 (371)
T ss_dssp             EEETTSEEEEEEHH
T ss_pred             EEcCCCeEEEEeCC
Confidence            99999999999985

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.8e-37  Score=302.81  Aligned_cols=280  Identities=21%  Similarity=0.376  Sum_probs=249.0

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcc--
Q 008467          273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE--  349 (564)
Q Consensus       273 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~--  349 (564)
                      +|...|++++|+|++++|+||+.||.|+||+.. +.....+..|..+|.+++|+|++.++++|+.|+.+++|+.....  
T Consensus        53 GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~  132 (340)
T d1tbga_          53 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGN  132 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSC
T ss_pred             CCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccc
Confidence            456889999999999999999999999999975 56677889999999999999999999999999999999976543  


Q ss_pred             --eeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEe
Q 008467          350 --WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN  427 (564)
Q Consensus       350 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd  427 (564)
                        ....+..+........+.....+.....+.....+.............+...+.+..+.+.+.++++|+.|+.|++||
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d  212 (340)
T d1tbga_         133 VRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD  212 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred             cccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEE
Confidence              333445555555566666677788888899998888888777777788888999999999999999999999999999


Q ss_pred             CCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEE--eCCCCCEEEEEEcCCCC
Q 008467          428 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL--NGHREPVYSLAFSPTGE  505 (564)
Q Consensus       428 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~h~~~i~~~~~spdg~  505 (564)
                      +++++++..+.+|...|++++|+|++.         +|++|+.||.|++||+.....+..+  ..+..+|.+++|+|+|+
T Consensus       213 ~~~~~~~~~~~~h~~~i~~v~~~p~~~---------~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  283 (340)
T d1tbga_         213 VREGMCRQTFTGHESDINAICFFPNGN---------AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR  283 (340)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEECTTSS---------EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSC
T ss_pred             CCCCcEEEEEeCCCCCeEEEEECCCCC---------EEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCC
Confidence            999999999999999999999999875         7899999999999999998887665  35667899999999999


Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEEecC-CCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467          506 YLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLD  561 (564)
Q Consensus       506 ~lasgs~dg~i~iw~~~~~~~~~~~~~~-~~i~~~~w~~~g~~la~~~~~~~v~v~~  561 (564)
                      +|++|+.||.|++||+.+++++.++.++ +.|.+++|+|+|++||+|+.||.|+|||
T Consensus       284 ~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            9999999999999999999999999874 5799999999999999999999999997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-36  Score=294.20  Aligned_cols=318  Identities=24%  Similarity=0.428  Sum_probs=260.1

Q ss_pred             ceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC
Q 008467          208 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG  287 (564)
Q Consensus       208 ~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g  287 (564)
                      ...+|+||++.|.+ +++++|++|||||.||+|+|||+.+++.             +...    ..|...|.+++|+++ 
T Consensus         8 ~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~-------------~~~~----~~h~~~V~~v~~~~~-   68 (342)
T d2ovrb2           8 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKC-------------LRTL----VGHTGGVWSSQMRDN-   68 (342)
T ss_dssp             CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCE-------------EEEC----CCCSSCEEEEEEETT-
T ss_pred             cCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCE-------------EEEE----eCCCCCEEEEEeCCC-
Confidence            34689999999975 3777899999999999999999987642             1222    245678999999875 


Q ss_pred             CEEEEEeCCCeEEEEECCCcee-EeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEc
Q 008467          288 TLLATGSYDGQARIWSTNGDLK-CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW  366 (564)
Q Consensus       288 ~~l~sg~~dg~i~vw~~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  366 (564)
                       +|++|+.|+.+++|+...... .....+...+....+.  ...+..+..|+++.+|+..++.....+........ ...
T Consensus        69 -~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~-~~~  144 (342)
T d2ovrb2          69 -IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR-CVQ  144 (342)
T ss_dssp             -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEE-EEE
T ss_pred             -ccccceecccccccccccccceecccccceeEeeeecc--cccccccccceeEEEeecccccceeeeecccccce-eec
Confidence             999999999999999775443 3444555566655443  46788899999999999999887766655444333 233


Q ss_pred             CCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEE
Q 008467          367 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT  446 (564)
Q Consensus       367 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~  446 (564)
                      .....++.++.|+.+++|+......+..+.+|...+.++.+  ++.+|++|+.||.|++||+..++++..+..|...+.+
T Consensus       145 ~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~  222 (342)
T d2ovrb2         145 YDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG  222 (342)
T ss_dssp             ECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEE
T ss_pred             cccceeeeecCCCeEEEeecccceeeEEEcCcccccccccC--CCCEEEEEeCCCeEEEeecccceeeeEecccccceeE
Confidence            45567788899999999999999999999999887776655  6789999999999999999999999999999999999


Q ss_pred             EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeC---CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 008467          447 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG---HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE  523 (564)
Q Consensus       447 i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~  523 (564)
                      +.+++.           +|++|+.||.|++||+...+....+..   |...+.+++|+  ++++++|+.||.|+|||+++
T Consensus       223 ~~~~~~-----------~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~t  289 (342)
T d2ovrb2         223 MELKDN-----------ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKT  289 (342)
T ss_dssp             EEEETT-----------EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTT
T ss_pred             EecCCC-----------EEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCC
Confidence            988753           789999999999999999888877765   45667777775  56999999999999999999


Q ss_pred             CeEEEEEec------CCCEEEEEEccCCCEEEEEEcCCc----EEEEEee
Q 008467          524 GKIVKTYTG------NGGIFEVCWNKEGDKIAACFANHT----VCVLDFR  563 (564)
Q Consensus       524 ~~~~~~~~~------~~~i~~~~w~~~g~~la~~~~~~~----v~v~~~~  563 (564)
                      |++++.+..      .+.|++++|+|+|..||+|+.||+    +.||||.
T Consensus       290 g~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         290 GEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             CCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             CCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence            999988752      245899999999999999999985    8999986

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.3e-37  Score=304.73  Aligned_cols=319  Identities=22%  Similarity=0.340  Sum_probs=246.5

Q ss_pred             eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467          209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  288 (564)
Q Consensus       209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  288 (564)
                      ..+|+||...|.+| +++++++||||+.||+|+|||+.+++.             +...    ..|...|++++|+++ .
T Consensus         5 ~~tL~GH~~~vitc-~~~~~~~l~tgs~Dg~i~vWd~~~~~~-------------~~~l----~~H~~~V~~l~~s~~-~   65 (355)
T d1nexb2           5 RTTLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKF-------------LLQL----SGHDGGVWALKYAHG-G   65 (355)
T ss_dssp             EEEEECCSSSCEEE-EEEETTEEEEEETTTEEEEEETTTTEE-------------EEEE----ECCSSCEEEEEEETT-T
T ss_pred             cEEECCcCCCcEEE-EEECCCEEEEEeCCCeEEEEECCCCcE-------------EEEE----ECCCCCEEEEEEcCC-C
Confidence            46799999987432 455789999999999999999876532             1222    235678999999986 5


Q ss_pred             EEEEEeCCCeEEEEECCCcee-Eee--cCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEee---------
Q 008467          289 LLATGSYDGQARIWSTNGDLK-CTL--SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF---------  356 (564)
Q Consensus       289 ~l~sg~~dg~i~vw~~~~~~~-~~~--~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~---------  356 (564)
                      +|++|+.||.|++|+...... ...  ..+...+....+++++.++++++.|++|++||+.+.........         
T Consensus        66 ~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~  145 (355)
T d1nexb2          66 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH  145 (355)
T ss_dssp             EEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEES
T ss_pred             EEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceecccee
Confidence            899999999999999765432 222  23334456677889999999999999999999987654332211         


Q ss_pred             --------------cccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCc
Q 008467          357 --------------HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVT  422 (564)
Q Consensus       357 --------------~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~  422 (564)
                                    +...+... ..+...++.+..|+.+++|++...+.+..+.++...+.++.|+|+++++++++.|++
T Consensus       146 ~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  224 (355)
T d1nexb2         146 TPEENPYFVGVLRGHMASVRTV-SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT  224 (355)
T ss_dssp             CTTTCTTEEEEEECCSSCEEEE-EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred             ccccccceeeeeeecccccccc-ccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccce
Confidence                          11111111 123456788899999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEE-EEc
Q 008467          423 AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSL-AFS  501 (564)
Q Consensus       423 i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~-~~s  501 (564)
                      |++||..++..+..+.+|...|.++.|++.           +|++|+.||+|++||+.++.....  .|...+.++ .|+
T Consensus       225 i~i~d~~~~~~~~~~~~h~~~v~~~~~~~~-----------~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~  291 (355)
T d1nexb2         225 IRIWDLENGELMYTLQGHTALVGLLRLSDK-----------FLVSAAADGSIRGWDANDYSRKFS--YHHTNLSAITTFY  291 (355)
T ss_dssp             EEEEETTTCCEEEEECCCSSCCCEEEECSS-----------EEEEECTTSEEEEEETTTCCEEEE--EECTTCCCCCEEE
T ss_pred             EEeeeccccccccccccccccccccccccc-----------eeeeeecccccccccccccceecc--cccCCceEEEEEc
Confidence            999999999999999999999999999753           689999999999999998876544  455555554 567


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCeEEEE-Eec-CCCEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467          502 PTGEYLASGSLDKSMHIWSLKEGKIVKT-YTG-NGGIFEVCWNKEGDKIAACFANHTVCVLDF  562 (564)
Q Consensus       502 pdg~~lasgs~dg~i~iw~~~~~~~~~~-~~~-~~~i~~~~w~~~g~~la~~~~~~~v~v~~~  562 (564)
                      +++++|++|+ ||.|+|||+++|+++.. +.+ ...|.+++|+|+ ..+++++.||++.||.+
T Consensus       292 ~~~~~l~~g~-d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         292 VSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             ECSSEEEEEE-TTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred             CCCCEEEEEe-CCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence            8888877765 88999999999998754 333 356999999987 47788889998766544

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=6.4e-37  Score=295.75  Aligned_cols=282  Identities=20%  Similarity=0.284  Sum_probs=222.9

Q ss_pred             eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467          209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  288 (564)
Q Consensus       209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  288 (564)
                      ..++.||...|++++|+|++++||||+.||+|++||+.++...             +.   ....+...|++++|+|+|.
T Consensus         5 ~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~-------------~~---~~~~h~~~v~~v~~~~~g~   68 (299)
T d1nr0a2           5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISN-------------RV---FPDVHATMITGIKTTSKGD   68 (299)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE-------------EC---SSCSCSSCEEEEEECTTSC
T ss_pred             ceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE-------------EE---EcCCCCCcEEEEEeeccce
Confidence            4688999999999999999999999999999999999875421             11   1123567899999999997


Q ss_pred             EEEEEeCCCeEEEEECCCce----eEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEE
Q 008467          289 LLATGSYDGQARIWSTNGDL----KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV  364 (564)
Q Consensus       289 ~l~sg~~dg~i~vw~~~~~~----~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~  364 (564)
                      + ++++.|+.+++|+..+..    ......|...+.++.|+|++..++++ .++.+++|+....  .             
T Consensus        69 ~-~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~-~~~~i~~~~~~~~--~-------------  131 (299)
T d1nr0a2          69 L-FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAA-CYKHIAIYSHGKL--T-------------  131 (299)
T ss_dssp             E-EEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEE-ESSEEEEEETTEE--E-------------
T ss_pred             e-ecccceeeEEEeccCCcccccccccccccccccccccccccccccccc-ccccccccccccc--c-------------
Confidence            5 566789999999975432    22345677889999999999876655 4678999984321  0             


Q ss_pred             EcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeee-eccccccc
Q 008467          365 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH-DLREHSKE  443 (564)
Q Consensus       365 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~-~~~~~~~~  443 (564)
                                                  ...  ....+.+++|+|++++|++|+.||.|++||+.+..... ....|...
T Consensus       132 ----------------------------~~~--~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~  181 (299)
T d1nr0a2         132 ----------------------------EVP--ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAE  181 (299)
T ss_dssp             ----------------------------EEE--CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSC
T ss_pred             ----------------------------ccc--ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                        001  12346789999999999999999999999998776543 34568899


Q ss_pred             EEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE---EEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 008467          444 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY---SLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS  520 (564)
Q Consensus       444 i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~---~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~  520 (564)
                      |.+++|+|++.         +|++++.|+.|++||+.++..+.   .+.+|..+|++++|+|+|++||+|+.||.|++||
T Consensus       182 i~~~~~~~~~~---------~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd  252 (299)
T d1nr0a2         182 ITSVAFSNNGA---------FLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN  252 (299)
T ss_dssp             EEEEEECTTSS---------EEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ccccccccccc---------cccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEE
Confidence            99999999875         78999999999999998776543   4567899999999999999999999999999999


Q ss_pred             CCCCeEEEEEe---c-CCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          521 LKEGKIVKTYT---G-NGGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       521 ~~~~~~~~~~~---~-~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      ++++.......   + ...+..++| +++++|++|+.|+.|+|||+-
T Consensus       253 ~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         253 MNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             TTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred             CCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence            98875433322   1 234666666 567899999999999999973

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.4e-36  Score=293.67  Aligned_cols=248  Identities=24%  Similarity=0.366  Sum_probs=206.6

Q ss_pred             ceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC
Q 008467          208 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG  287 (564)
Q Consensus       208 ~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g  287 (564)
                      ...++.+|...|++++|+|+|++||+|+.||+|+||++.++...        ...   .    ...+...|.+++|+|++
T Consensus        50 ~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~--------~~~---~----~~~~~~~v~~v~~s~d~  114 (311)
T d1nr0a1          50 DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI--------LKT---T----IPVFSGPVKDISWDSES  114 (311)
T ss_dssp             CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC--------EEE---E----EECSSSCEEEEEECTTS
T ss_pred             eeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccc--------ccc---c----cccccCccccccccccc
Confidence            44677899999999999999999999999999999998765321        001   1    12345789999999999


Q ss_pred             CEEEEEeCC--CeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCE-EEEeeCCCcEEEEECCCcceeEEEeecccCeEE
Q 008467          288 TLLATGSYD--GQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDY-LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD  363 (564)
Q Consensus       288 ~~l~sg~~d--g~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~  363 (564)
                      ++|++++.+  ..++||+.+ +.....+.+|...|.+++|+|++.+ |++|+.|++|++||+++++.             
T Consensus       115 ~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~-------------  181 (311)
T d1nr0a1         115 KRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF-------------  181 (311)
T ss_dssp             CEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE-------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccccccccccc-------------
Confidence            999999864  569999976 4556678899999999999999985 78899999999999987542             


Q ss_pred             EEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecc-----
Q 008467          364 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR-----  438 (564)
Q Consensus       364 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~-----  438 (564)
                                                  ...+.+|...|+++.|+|++++|++|+.|+.|++||..++..+..+.     
T Consensus       182 ----------------------------~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~  233 (311)
T d1nr0a1         182 ----------------------------KSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLK  233 (311)
T ss_dssp             ----------------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSS
T ss_pred             ----------------------------ccccccccccccccccCccccccccccccccccccccccccccccccccccc
Confidence                                        23456788899999999999999999999999999999887766543     


Q ss_pred             --cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCC---CEEEEEEcCCCCEEEEEeCC
Q 008467          439 --EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHRE---PVYSLAFSPTGEYLASGSLD  513 (564)
Q Consensus       439 --~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~---~i~~~~~spdg~~lasgs~d  513 (564)
                        +|...|++++|+|++.         +|++|+.||+|+|||+++++++.++..|..   .+.++.|  ++.+|++++.|
T Consensus       234 ~~~h~~~V~~~~~s~~~~---------~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~--~~~~l~s~s~d  302 (311)
T d1nr0a1         234 NVAHSGSVFGLTWSPDGT---------KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISAN  302 (311)
T ss_dssp             SCSSSSCEEEEEECTTSS---------EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETT
T ss_pred             cccccccccccccCCCCC---------EEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEe--cCCEEEEEECC
Confidence              5788999999999875         789999999999999999999999876643   3444544  56689999999


Q ss_pred             CcEEEEeCC
Q 008467          514 KSMHIWSLK  522 (564)
Q Consensus       514 g~i~iw~~~  522 (564)
                      |.|++||.+
T Consensus       303 G~i~~wd~d  311 (311)
T d1nr0a1         303 GFINFVNPE  311 (311)
T ss_dssp             CCEEEEETT
T ss_pred             CEEEEEeCC
Confidence            999999964

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.3e-35  Score=294.33  Aligned_cols=240  Identities=20%  Similarity=0.384  Sum_probs=206.0

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCc---eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCccee
Q 008467          275 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK  351 (564)
Q Consensus       275 ~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~  351 (564)
                      ..+|+|++|+|+|++||+|+.||.|+||+..+.   ....+.+|.++|.+++|+|++++|++|+.|++|++||+.++...
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~   86 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK   86 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccc
Confidence            367999999999999999999999999997643   45568899999999999999999999999999999998765433


Q ss_pred             EEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 008467          352 QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD  431 (564)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~  431 (564)
                      .                                       ...+.+|...|.+++|+|+++.|++|+.|+++++|++...
T Consensus        87 ~---------------------------------------~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~  127 (371)
T d1k8kc_          87 P---------------------------------------TLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQE  127 (371)
T ss_dssp             E---------------------------------------EEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETT
T ss_pred             c---------------------------------------ccccccccccccccccccccccceeecccCcceeeeeecc
Confidence            2                                       2345578889999999999999999999999999987654


Q ss_pred             ee----eeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC------------------CeEEEEEe
Q 008467          432 KY----VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL------------------GKLLYSLN  489 (564)
Q Consensus       432 ~~----~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~------------------~~~~~~~~  489 (564)
                      ..    ......|...|.+++|+|++.         +|++|+.|++|++||...                  +..+....
T Consensus       128 ~~~~~~~~~~~~~~~~v~~v~~~p~~~---------~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (371)
T d1k8kc_         128 NDWWVCKHIKKPIRSTVLSLDWHPNSV---------LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS  198 (371)
T ss_dssp             TTEEEEEEECTTCCSCEEEEEECTTSS---------EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC
T ss_pred             ccccccccccccccccccccccccccc---------ceeccccCcEEEEEeeccCccccccccccccccccceeeeeecc
Confidence            32    344567889999999999875         789999999999999753                  34567778


Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC-CCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          490 GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       490 ~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~-~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      +|...|++++|+|+|++||+++.|+.|++||+.++..+..+..+ .+|.+++|+|+|++||+|+ |+.+.+|.+.
T Consensus       199 ~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~  272 (371)
T d1k8kc_         199 SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYD  272 (371)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEE
T ss_pred             CccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEc-CCceEEEEee
Confidence            89999999999999999999999999999999999998888765 4699999999999888775 6677777653

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-34  Score=284.12  Aligned_cols=241  Identities=18%  Similarity=0.309  Sum_probs=213.5

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCc------eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECC
Q 008467          273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD------LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK  346 (564)
Q Consensus       273 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~------~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~  346 (564)
                      .|...|++++|+|+|++|++|+ ||.|+|||....      ......+|.++|.+++|+|++++|++|+.|++|++||+.
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~  127 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA  127 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccc
Confidence            4567899999999999999997 899999997532      222346799999999999999999999999999999986


Q ss_pred             CcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEE
Q 008467          347 TEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW  426 (564)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iw  426 (564)
                      ....                                       +....+.+|...+.+++|+|++.++++++.|+.|++|
T Consensus       128 ~~~~---------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~  168 (337)
T d1gxra_         128 APTP---------------------------------------RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW  168 (337)
T ss_dssp             CC-----------------------------------------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             cccc---------------------------------------ccccccccccccccccccccccccccccccccccccc
Confidence            5321                                       1223456788899999999999999999999999999


Q ss_pred             eCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCE
Q 008467          427 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY  506 (564)
Q Consensus       427 d~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~  506 (564)
                      ++.++++......|...+.+++|+|++.         .+++|+.|+.|++||+++++.+..+. |..+|++++|+|++++
T Consensus       169 ~~~~~~~~~~~~~~~~~v~~l~~s~~~~---------~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~  238 (337)
T d1gxra_         169 DLHNQTLVRQFQGHTDGASCIDISNDGT---------KLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEW  238 (337)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEECTTSS---------EEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSE
T ss_pred             cccccccccccccccccccccccccccc---------ccccccccccccccccccceeecccc-cccceEEEEEcccccc
Confidence            9999999988899999999999999875         68899999999999999999887775 7889999999999999


Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          507 LASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       507 lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      |++|+.|+.|++|++++++..........|..++|+|+|++|++|+.|+.|+|||++
T Consensus       239 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~  295 (337)
T d1gxra_         239 LAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP  295 (337)
T ss_dssp             EEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             cceeccccccccccccccccccccccccccceEEECCCCCEEEEEeCCCeEEEEECC
Confidence            999999999999999999887777677789999999999999999999999999974

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.5e-34  Score=279.47  Aligned_cols=281  Identities=18%  Similarity=0.308  Sum_probs=220.4

Q ss_pred             ceEEEEECCCCCEEEEEECCC-cEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC--CCCEEEEEe
Q 008467          218 EVCACAWSPAGSLLASGSGDS-TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--EGTLLATGS  294 (564)
Q Consensus       218 ~V~~~~~sp~~~~lasgs~D~-~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~--~g~~l~sg~  294 (564)
                      .+++++|+|++..||.++.++ .++.|+.......      .     .....+   .+...|++++|+|  +|.+|++|+
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~------~-----~~~~~g---h~~~~v~~v~fsP~~~g~~lasgs   84 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVP------P-----VVQFTG---HGSSVVTTVKFSPIKGSQYLCSGD   84 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSC------S-----EEEECT---TTTSCEEEEEECSSTTCCEEEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCcc------c-----eEEEeC---CCCCCEEEEEEeeCCCCCEEEEEe
Confidence            356889999999999987665 3566765432211      0     011111   2346799999998  678999999


Q ss_pred             CCCeEEEEECCC---------ceeEeecCCCCCEEEEEeCCCCCEEEEeeC--CCcEEEEECCCcceeEEEeecccCeEE
Q 008467          295 YDGQARIWSTNG---------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSC--DKTAIVWDVKTEEWKQQFEFHSGPTLD  363 (564)
Q Consensus       295 ~dg~i~vw~~~~---------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~--D~~v~iwd~~~~~~~~~~~~~~~~~~~  363 (564)
                      .||.|+||+...         .....+..|.++|.+++|++++++|++++.  ++.+++|+..++.              
T Consensus        85 ~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~--------------  150 (325)
T d1pgua1          85 ESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGN--------------  150 (325)
T ss_dssp             TTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCC--------------
T ss_pred             CCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccc--------------
Confidence            999999998642         122345679999999999999999887764  5678888776543              


Q ss_pred             EEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCE-EEEEeCCCcEEEEeCCCCeeeeec---cc
Q 008467          364 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSL-LASCSDDVTAKIWNMKQDKYVHDL---RE  439 (564)
Q Consensus       364 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~-las~s~dg~i~iwd~~~~~~~~~~---~~  439 (564)
                                                 .+..+.+|...|++++|+|+++. +++++.|+.+++||....+....+   ..
T Consensus       151 ---------------------------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~  203 (325)
T d1pgua1         151 ---------------------------SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHK  203 (325)
T ss_dssp             ---------------------------EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSC
T ss_pred             ---------------------------cceeeeecccccccccccccccceEEEeecccccccccccccccceecccccC
Confidence                                       34556789999999999999875 778999999999999887765443   45


Q ss_pred             ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEc---CCCCEEEEEeCCCcE
Q 008467          440 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFS---PTGEYLASGSLDKSM  516 (564)
Q Consensus       440 ~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~s---pdg~~lasgs~dg~i  516 (564)
                      |...|++++|+|++.        .+|++|+.||.|++||+++++.+..+.+|..++.++.|+   |||++|++|+.|+.|
T Consensus       204 ~~~~v~~v~~~pd~~--------~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i  275 (325)
T d1pgua1         204 QGSFVRDVEFSPDSG--------EFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATI  275 (325)
T ss_dssp             TTCCEEEEEECSTTC--------CEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEE
T ss_pred             CCCccEEeeeccccc--------eeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeE
Confidence            778899999999743        278999999999999999999999999988887666666   789999999999999


Q ss_pred             EEEeCCCCeEEEEEecCCC-----EEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467          517 HIWSLKEGKIVKTYTGNGG-----IFEVCWNKEGDKIAACFANHTVCVLDF  562 (564)
Q Consensus       517 ~iw~~~~~~~~~~~~~~~~-----i~~~~w~~~g~~la~~~~~~~v~v~~~  562 (564)
                      +|||++++++++.+..+..     ...+.|++++ +|++|+.||.|.|||+
T Consensus       276 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         276 RVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNG-RIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEETTTTEEEEEEECCTTCGGGCEEEEEEEETT-EEEEEETTSCEEEEET
T ss_pred             EEEECCCCCEEEEEEecCCcccCeEEEEEECCCC-EEEEEECCCEEEEEEC
Confidence            9999999999998875432     3455666554 7788999999999995

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.4e-33  Score=267.39  Aligned_cols=254  Identities=26%  Similarity=0.458  Sum_probs=233.7

Q ss_pred             EEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCC-ceEEEEeCCC
Q 008467          301 IWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDN  379 (564)
Q Consensus       301 vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~  379 (564)
                      .|......+..+.+|.++|++|+|+|++++|+||+.|++|+|||+.+++.+..+..|...+.++.|.++ ..++++..++
T Consensus         2 ~w~p~~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~   81 (317)
T d1vyhc1           2 EWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADM   81 (317)
T ss_dssp             CCCCCSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccCCCCCccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccc
Confidence            465666667789999999999999999999999999999999999999999999999999999999755 5667888889


Q ss_pred             eEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCC
Q 008467          380 MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNP  459 (564)
Q Consensus       380 ~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~  459 (564)
                      .+..++.........+.+|...+.++.|+|+++.+++++.|+.+++||+.++..+..+..|...+.+++|+|++.     
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  156 (317)
T d1vyhc1          82 TIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT-----  156 (317)
T ss_dssp             CCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS-----
T ss_pred             ccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCC-----
Confidence            999999988888888899999999999999999999999999999999999999999999999999999999875     


Q ss_pred             CCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCC--------------------CEEEEEeCCCcEEEE
Q 008467          460 NQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG--------------------EYLASGSLDKSMHIW  519 (564)
Q Consensus       460 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg--------------------~~lasgs~dg~i~iw  519 (564)
                          +|++++.|+.|++|++.+++.+..+.+|...+.+++|+|++                    .++++|+.|+.|++|
T Consensus       157 ----~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~  232 (317)
T d1vyhc1         157 ----LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW  232 (317)
T ss_dssp             ----EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEE
T ss_pred             ----EEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEE
Confidence                78999999999999999999999999999999999998864                    468999999999999


Q ss_pred             eCCCCeEEEEEecC-CCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          520 SLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       520 ~~~~~~~~~~~~~~-~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      ++.+++++.++.++ ..|.+++|+|+|++|++|+.||.|.|||++
T Consensus       233 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~  277 (317)
T d1vyhc1         233 DVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK  277 (317)
T ss_dssp             ETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCT
T ss_pred             ECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            99999999998764 568999999999999999999999999975

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.8e-33  Score=267.46  Aligned_cols=278  Identities=18%  Similarity=0.264  Sum_probs=218.0

Q ss_pred             ceeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC
Q 008467          208 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG  287 (564)
Q Consensus       208 ~~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g  287 (564)
                      .+++|.||..+|++++|+|    |+||+.||+|++||+.++.                      ..|...|.+++|++++
T Consensus         5 ~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~----------------------~~h~~~V~~~~~~~~~   58 (287)
T d1pgua2           5 VLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH----------------------QDHSNLIVSLDNSKAQ   58 (287)
T ss_dssp             EEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE----------------------CCCCSCEEEEECCSTT
T ss_pred             eeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC----------------------CCCCCCEEEEEecCCC
Confidence            3578999999999999998    9999999999999975421                      1346789999998764


Q ss_pred             CEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcC
Q 008467          288 TLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR  367 (564)
Q Consensus       288 ~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  367 (564)
                       .+++++.|+++++|+....      .....+..+.+++++..++++ .++.+.+|+..++.....+.... +...+...
T Consensus        59 -~~~s~s~D~~v~~w~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  129 (287)
T d1pgua2          59 -EYSSISWDDTLKVNGITKH------EFGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVRLNS-PGSAVSLS  129 (287)
T ss_dssp             -CCEEEETTTEEEETTEEEE------ECSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEECSS-CEEEEEEC
T ss_pred             -eEEEEeecccccccccccc------ccccceeeeeeccCCceEEEe-ecccceeeeccceeeeeeccccc-eeeeeecc
Confidence             5789999999999985321      233456778889888766654 56678899999988887766543 44455555


Q ss_pred             CCceEEEEeCCCeEEEEEcCCCceeeEec-CCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeee-ecccccccEE
Q 008467          368 NNVSFATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH-DLREHSKEIY  445 (564)
Q Consensus       368 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~-~~~~~~~~i~  445 (564)
                      ....++++..++.+++|++........+. .|.+.+++++|+|++++|++|+.||.|++||+.++.... .+..|...|.
T Consensus       130 ~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~  209 (287)
T d1pgua2         130 QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKIN  209 (287)
T ss_dssp             SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEE
T ss_pred             CcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccc
Confidence            55545555556689999987665544443 577889999999999999999999999999999887654 4678999999


Q ss_pred             EEEEccCCCCCC-CCCCcEEEEEEeCCCeEEEEeCCC-CeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 008467          446 TIRWSPTGSGTN-NPNQQLILASASFDSTVKLWDVEL-GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL  521 (564)
Q Consensus       446 ~i~~~p~~~~~~-~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~  521 (564)
                      +++|+|.+.... ......+|++|+.|++|+|||+++ ++.+..+.+|..+|++++|+|++ .|+++|.||.|++|++
T Consensus       210 ~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         210 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             eeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            999999764321 112234789999999999999976 55677788999999999999986 5889999999999985

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-32  Score=276.30  Aligned_cols=311  Identities=20%  Similarity=0.347  Sum_probs=217.2

Q ss_pred             eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeecccccc-CCCCeEEEEECC-C
Q 008467          209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNE-KSKDVTTLDWNG-E  286 (564)
Q Consensus       209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~V~~l~~s~-~  286 (564)
                      ....++|.+.|+++++++  ++|+|||.|++|+||+..+......     ... ........... +...+..+.+++ +
T Consensus         7 ~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (393)
T d1sq9a_           7 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENP-----KDK-SYSHFVHKSGLHHVDVLQAIERDAFE   78 (393)
T ss_dssp             EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCG-----GGG-EEEEECCTTCEEEEEEEEEEETTTEE
T ss_pred             eecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcc-----cce-eEeeeeccCCceEeeeEeeeccCCCC
Confidence            356789999999999875  6999999999999999765432111     000 00110000000 001122222222 3


Q ss_pred             CCEEEEEeCCCeEEEEECCCc-----ee-E-----eecCCCCCEEEEEeCCC-----CCEEEEeeCCCcEEEEECCCcce
Q 008467          287 GTLLATGSYDGQARIWSTNGD-----LK-C-----TLSKHKGPIFSLKWNKK-----GDYLLTGSCDKTAIVWDVKTEEW  350 (564)
Q Consensus       287 g~~l~sg~~dg~i~vw~~~~~-----~~-~-----~~~~h~~~V~~l~~~~~-----~~~l~s~s~D~~v~iwd~~~~~~  350 (564)
                      +.++++++.||.|++|+....     .. .     ....+...++.++|.++     +.++++++.|+++++|++.....
T Consensus        79 ~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~  158 (393)
T d1sq9a_          79 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD  158 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred             CcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCc
Confidence            467889999999999985311     11 0     11235567888888775     36789999999999999754321


Q ss_pred             eE-EEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 008467          351 KQ-QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK  429 (564)
Q Consensus       351 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~  429 (564)
                      .. .+..+......                   +     .........+...+++++|+|++ +||+|+.|++|+|||+.
T Consensus       159 ~~~~~~~~~~~~~~-------------------~-----~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~  213 (393)
T d1sq9a_         159 ESNSLTLNWSPTLE-------------------L-----QGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELS  213 (393)
T ss_dssp             HHHHTTTCCCCEEE-------------------E-----EEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETT
T ss_pred             ccceeeeeecccee-------------------c-----ccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeec
Confidence            00 00000000000                   0     00111223456678999999997 88999999999999999


Q ss_pred             CCeeeee------cccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCC---eEEEEeCCCCeEEEEEe-----------
Q 008467          430 QDKYVHD------LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS---TVKLWDVELGKLLYSLN-----------  489 (564)
Q Consensus       430 ~~~~~~~------~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~-----------  489 (564)
                      +++++..      +.+|..+|.+++|+|++.         +|++|+.|+   .|++||+++++++..+.           
T Consensus       214 ~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~---------~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~  284 (393)
T d1sq9a_         214 TLRPLYNFESQHSMINNSNSIRSVKFSPQGS---------LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLG  284 (393)
T ss_dssp             TTEEEEEEECCC---CCCCCEEEEEECSSTT---------EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------C
T ss_pred             ccccccccccccccccccceEEEcccccccc---------eeeeecCCCCcceeeecccccceeeeeeccccccccceee
Confidence            8887654      456889999999999886         799999887   49999999998887764           


Q ss_pred             --CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC----------------------CCEEEEEEccCC
Q 008467          490 --GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN----------------------GGIFEVCWNKEG  545 (564)
Q Consensus       490 --~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~----------------------~~i~~~~w~~~g  545 (564)
                        +|...|++++|+|||++||+||.|++|+|||+++|+++.++.++                      +++.++.|.+++
T Consensus       285 ~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (393)
T d1sq9a_         285 EFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKG  364 (393)
T ss_dssp             CBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTT
T ss_pred             eecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccC
Confidence              79999999999999999999999999999999999999998753                      346677776654


Q ss_pred             ----------CEEEEEEcCCcEEEEE
Q 008467          546 ----------DKIAACFANHTVCVLD  561 (564)
Q Consensus       546 ----------~~la~~~~~~~v~v~~  561 (564)
                                +.+++++.|+.+++|.
T Consensus       365 ~~~~~~~~~~~~~~~~~~d~~ir~~~  390 (393)
T d1sq9a_         365 WRSGMGADLNESLCCVCLDRSIRWFR  390 (393)
T ss_dssp             TSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred             ceeccccCCCCEEEEEEcCCeEEEEe
Confidence                      3477777888888874

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.5e-32  Score=265.93  Aligned_cols=257  Identities=18%  Similarity=0.271  Sum_probs=199.5

Q ss_pred             eeEccCCc-cceEEEEECC--CCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC
Q 008467          209 VTILEGHT-SEVCACAWSP--AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG  285 (564)
Q Consensus       209 ~~~l~~h~-~~V~~~~~sp--~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~  285 (564)
                      +..+.+|. ..|++++|+|  ++.+||||+.||+|+|||+..+.....        .. .........+..+|.+++|++
T Consensus        55 ~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~--------~~-~~~~~~~~~~~~~v~~v~~s~  125 (325)
T d1pgua1          55 VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNS--------VE-VNVKSEFQVLAGPISDISWDF  125 (325)
T ss_dssp             EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTE--------EE-EEEEEEEECCSSCEEEEEECT
T ss_pred             eEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceee--------ee-cccccccccccCcEEEEEECC
Confidence            44567774 6899999998  468999999999999999865432111        00 111112234567899999999


Q ss_pred             CCCEEEEEeC--CCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCE-EEEeeCCCcEEEEECCCcceeEEEeecccCe
Q 008467          286 EGTLLATGSY--DGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDY-LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT  361 (564)
Q Consensus       286 ~g~~l~sg~~--dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~  361 (564)
                      +|+++++++.  ++.+++|+.+ +.....+.+|..+|.+++|+|++.+ +++++.|+.+++||+.+.+....+       
T Consensus       126 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~-------  198 (325)
T d1pgua1         126 EGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD-------  198 (325)
T ss_dssp             TSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEE-------
T ss_pred             CCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceec-------
Confidence            9999988765  6789999875 5667788999999999999999875 678999999999998765433221       


Q ss_pred             EEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCeeeeecccc
Q 008467          362 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKYVHDLREH  440 (564)
Q Consensus       362 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~-~~~las~s~dg~i~iwd~~~~~~~~~~~~~  440 (564)
                                                     ..+.+|...|.+++|+|+ +.+|++|+.|+.|++||+++++.+..+..|
T Consensus       199 -------------------------------~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~  247 (325)
T d1pgua1         199 -------------------------------RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDD  247 (325)
T ss_dssp             -------------------------------CSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBT
T ss_pred             -------------------------------ccccCCCCccEEeeeccccceeccccccccceeeeeecccccccccccc
Confidence                                           223567888999999997 688999999999999999999999999988


Q ss_pred             cccEEEEEEc---cCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCC--EEEEEEcCC-CCEEEEEeCCC
Q 008467          441 SKEIYTIRWS---PTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREP--VYSLAFSPT-GEYLASGSLDK  514 (564)
Q Consensus       441 ~~~i~~i~~~---p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~--i~~~~~spd-g~~lasgs~dg  514 (564)
                      ..++..+.|+   |++.         +|++++.|++|+|||+++++++..+..|...  +..+++.+. +.+|++||.||
T Consensus       248 ~~~v~~~~~s~~~~dg~---------~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg  318 (325)
T d1pgua1         248 QEPVQGGIFALSWLDSQ---------KFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG  318 (325)
T ss_dssp             TBCCCSCEEEEEESSSS---------EEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTS
T ss_pred             ccccccceeeeeccCCC---------EEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCC
Confidence            8776555554   3443         6899999999999999999999888766543  334444433 34789999999


Q ss_pred             cEEEEeC
Q 008467          515 SMHIWSL  521 (564)
Q Consensus       515 ~i~iw~~  521 (564)
                      .|+|||+
T Consensus       319 ~i~vwdl  325 (325)
T d1pgua1         319 TLNFYEL  325 (325)
T ss_dssp             CEEEEET
T ss_pred             EEEEEEC
Confidence            9999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2e-32  Score=267.08  Aligned_cols=293  Identities=15%  Similarity=0.083  Sum_probs=215.0

Q ss_pred             eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC-C
Q 008467          209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE-G  287 (564)
Q Consensus       209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~-g  287 (564)
                      +.++.+|++.|++++|+|++++||+||.||+|+|||+.++...          ..+...    ..|..+|++++|+|+ +
T Consensus         4 v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~----------~~~~~~----~~h~~~V~~v~f~~~~~   69 (342)
T d1yfqa_           4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN----------VDLLQS----LRYKHPLLCCNFIDNTD   69 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE----------EEEEEE----EECSSCEEEEEEEESSS
T ss_pred             EEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcc----------eEEEEe----cCCCCCEEEEEEeCCCC
Confidence            4577899999999999999999999999999999998654311          111111    134678999999986 5


Q ss_pred             CEEEEEeCCCeEEEEECCCce-eEee-cCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEE
Q 008467          288 TLLATGSYDGQARIWSTNGDL-KCTL-SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD  365 (564)
Q Consensus       288 ~~l~sg~~dg~i~vw~~~~~~-~~~~-~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~  365 (564)
                      .+|++|+.||.|++|+..... .... ..+........+.++...+++++.|+++++||+++.........         
T Consensus        70 ~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~---------  140 (342)
T d1yfqa_          70 LQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVK---------  140 (342)
T ss_dssp             EEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEE---------
T ss_pred             CEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeec---------
Confidence            689999999999999976432 2233 33344445566777889999999999999999876442221111         


Q ss_pred             cCCCceEEEEeCCCeEEEEEcCCCceeeEecC--CCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeee---ecccc
Q 008467          366 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAG--HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH---DLREH  440 (564)
Q Consensus       366 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~--h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~---~~~~~  440 (564)
                                                  ....  +........+.+.+..+++++.|+.|++|++.......   ....+
T Consensus       141 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~  192 (342)
T d1yfqa_         141 ----------------------------NLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGL  192 (342)
T ss_dssp             ----------------------------ESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSC
T ss_pred             ----------------------------ccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeeccc
Confidence                                        0111  11223455667788899999999999999987655432   22234


Q ss_pred             cccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE---------EEE------EeCCCCCEEEEEEcCCCC
Q 008467          441 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL---------LYS------LNGHREPVYSLAFSPTGE  505 (564)
Q Consensus       441 ~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---------~~~------~~~h~~~i~~~~~spdg~  505 (564)
                      ...+.+..+.|...        ..+++++.||.+.+|+......         ...      ..+|..+|++++|+|+++
T Consensus       193 ~~~~~~~~~~~~~~--------~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~  264 (342)
T d1yfqa_         193 KYQIRDVALLPKEQ--------EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK  264 (342)
T ss_dssp             SSCEEEEEECSGGG--------CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC
T ss_pred             ccceeeeEeecCCC--------CEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCcc
Confidence            44566666655432        3688999999999999764321         111      134667899999999999


Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEE
Q 008467          506 YLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVL  560 (564)
Q Consensus       506 ~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~  560 (564)
                      +||+|+.||.|+|||+++++.+.++.....+..++|+|+|+.||+++.|+.+.+|
T Consensus       265 ~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd~~~~~  319 (342)
T d1yfqa_         265 FLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTN  319 (342)
T ss_dssp             CEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHC
T ss_pred             EEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcCCcEEEe
Confidence            9999999999999999999999988766667778999999999999888765443

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.4e-31  Score=257.32  Aligned_cols=273  Identities=27%  Similarity=0.432  Sum_probs=216.5

Q ss_pred             CCCC-eEEEEECCCCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCccee
Q 008467          274 KSKD-VTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK  351 (564)
Q Consensus       274 ~~~~-V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~  351 (564)
                      |... |+|++|  ++++|+||+.||.|+|||.. ++...++.+|.++|++++|+|+ .+|++|+.|++|++|+.......
T Consensus        11 H~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~   87 (355)
T d1nexb2          11 HMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCT   87 (355)
T ss_dssp             CSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEE
T ss_pred             cCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccccc
Confidence            4454 466665  57899999999999999975 6777889999999999999985 58999999999999999888766


Q ss_pred             EEEeecccCe--EEEEc-CCCceEEEEeCCCeEEEEEcCCCceeeE-----------------------ecCCCcceEEE
Q 008467          352 QQFEFHSGPT--LDVDW-RNNVSFATSSTDNMIYVCKIGENRPIKT-----------------------FAGHQGEVNCV  405 (564)
Q Consensus       352 ~~~~~~~~~~--~~~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~-----------------------~~~h~~~i~~v  405 (564)
                      ..........  ....+ .+...+++++.|+.|++|++.....+..                       ...|...+.  
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--  165 (355)
T d1nexb2          88 HVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR--  165 (355)
T ss_dssp             EEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEE--
T ss_pred             cccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccccc--
Confidence            6554433332  22233 3445678899999999999876543221                       222333343  


Q ss_pred             EECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEE
Q 008467          406 KWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLL  485 (564)
Q Consensus       406 ~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~  485 (564)
                      .+.+++++++++..|+.|++||+.+++.+..+..+...+.++.|+|.+.         .+++++.|++|++||++++..+
T Consensus       166 ~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~d~~i~i~d~~~~~~~  236 (355)
T d1nexb2         166 TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK---------RCISASMDTTIRIWDLENGELM  236 (355)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTT---------EEEEEETTSCEEEEETTTCCEE
T ss_pred             ccccccceeeeecccceeeeeecccccceeeeeccccccccccccccce---------eeecccccceEEeeeccccccc
Confidence            3456789999999999999999999999988888999999999999875         7889999999999999999999


Q ss_pred             EEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          486 YSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       486 ~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      ..+.+|..+|.+++|++  ++|++|+.||.|++||++++.....+.........+|++++++|++| .|+.|+|||++
T Consensus       237 ~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~  311 (355)
T d1nexb2         237 YTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLR  311 (355)
T ss_dssp             EEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETT
T ss_pred             ccccccccccccccccc--ceeeeeecccccccccccccceecccccCCceEEEEEcCCCCEEEEE-eCCEEEEEECC
Confidence            99999999999999975  69999999999999999988766554433322334567888887777 58899999985

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-30  Score=248.07  Aligned_cols=273  Identities=23%  Similarity=0.394  Sum_probs=216.5

Q ss_pred             eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467          209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  288 (564)
Q Consensus       209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  288 (564)
                      +..+.+|...|+|++  +++++||||+.||+|+|||+.+++.             ++.+    ..|...|++++|  +++
T Consensus         8 i~~~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~-------------~~~l----~~H~~~V~~v~~--~~~   66 (293)
T d1p22a2           8 IHCRSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLEC-------------KRIL----TGHTGSVLCLQY--DER   66 (293)
T ss_dssp             EECCCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCE-------------EEEE----CCCSSCEEEEEC--CSS
T ss_pred             EeccCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcE-------------EEEE----ecCCCCEeeeec--ccc
Confidence            455678889999865  5799999999999999999976542             1222    235678999987  578


Q ss_pred             EEEEEeCCCeEEEEECCCcee-EeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeE---EEeecccCeEEE
Q 008467          289 LLATGSYDGQARIWSTNGDLK-CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ---QFEFHSGPTLDV  364 (564)
Q Consensus       289 ~l~sg~~dg~i~vw~~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~---~~~~~~~~~~~~  364 (564)
                      +|++|+.||.|++|+...... .....+.....  .+.+....++++..++.+++||..+.....   .+..+...+...
T Consensus        67 ~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  144 (293)
T d1p22a2          67 VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL--HLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV  144 (293)
T ss_dssp             EEEEEETTSCEEEEESSSCCEEEEECCCCSCEE--EEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEE
T ss_pred             eeecccccccccccccccccccccccccccccc--cccccccceeecccccceeEeeccccccccccccccccccccccc
Confidence            999999999999999765433 33333333333  345566789999999999999987765332   344555666666


Q ss_pred             EcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccE
Q 008467          365 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEI  444 (564)
Q Consensus       365 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i  444 (564)
                      .+... .+++++.|+.+++|+....+++..+.+|...+..+.++  +..+++++.||+|++||+++...+..+..|...+
T Consensus       145 ~~~~~-~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v  221 (293)
T d1p22a2         145 DFDDK-YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELV  221 (293)
T ss_dssp             EEETT-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred             eeccc-ccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceee
Confidence            66544 46678899999999999999999999999999888875  5689999999999999999999999988888888


Q ss_pred             EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC---------CeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCc
Q 008467          445 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL---------GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKS  515 (564)
Q Consensus       445 ~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~---------~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~  515 (564)
                      ..+.+  ++.         +|++|+.||.|++||+..         ..++..+.+|..+|++++|  ++++|||||.||+
T Consensus       222 ~~~~~--~~~---------~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~  288 (293)
T d1p22a2         222 RCIRF--DNK---------RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDT  288 (293)
T ss_dssp             EEEEC--CSS---------EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSE
T ss_pred             eeccc--cce---------EEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCCE
Confidence            76543  322         789999999999999642         3567889999999999999  4678999999999


Q ss_pred             EEEEe
Q 008467          516 MHIWS  520 (564)
Q Consensus       516 i~iw~  520 (564)
                      |+|||
T Consensus       289 i~iWD  293 (293)
T d1p22a2         289 ILIWD  293 (293)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99997

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-30  Score=245.94  Aligned_cols=267  Identities=29%  Similarity=0.502  Sum_probs=221.9

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCccee
Q 008467          273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK  351 (564)
Q Consensus       273 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~  351 (564)
                      .+.+.|+|++|  +|++||||+.||.|+|||.. +++..++.+|.++|++++|  ++++|++|+.|++|++|++..+...
T Consensus        13 ~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~   88 (293)
T d1p22a2          13 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEML   88 (293)
T ss_dssp             SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEE
T ss_pred             CCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccccccccc
Confidence            45678998765  78999999999999999975 6778899999999999988  4679999999999999999988776


Q ss_pred             EEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCc---eeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeC
Q 008467          352 QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR---PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNM  428 (564)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~---~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~  428 (564)
                      ............ .......++++..++.+.+|+.....   ....+..|...+.++.+.+  ..+++++.|+.|++||.
T Consensus        89 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~  165 (293)
T d1p22a2          89 NTLIHHCEAVLH-LRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNT  165 (293)
T ss_dssp             EEECCCCSCEEE-EECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEET
T ss_pred             cccccccccccc-ccccccceeecccccceeEeeccccccccccccccccccccccceecc--cccccccCCCceeeecC
Confidence            665544443333 23445567888999999999987654   3455678888888887764  57889999999999999


Q ss_pred             CCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEE
Q 008467          429 KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLA  508 (564)
Q Consensus       429 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~la  508 (564)
                      ++.+++..+.++...+..+.+++.           .+++++.||+|++||+++.+.+....+|...|..  +++++.+|+
T Consensus       166 ~~~~~~~~~~~~~~~v~~~~~~~~-----------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~  232 (293)
T d1p22a2         166 STCEFVRTLNGHKRGIACLQYRDR-----------LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIV  232 (293)
T ss_dssp             TTCCEEEEEECCSSCEEEEEEETT-----------EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEE
T ss_pred             CCCcEEEEEcccccccccccCCCC-----------eEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEE
Confidence            999999999999999988888653           6899999999999999999999999999888875  567889999


Q ss_pred             EEeCCCcEEEEeCCC---------CeEEEEEecC-CCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467          509 SGSLDKSMHIWSLKE---------GKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLD  561 (564)
Q Consensus       509 sgs~dg~i~iw~~~~---------~~~~~~~~~~-~~i~~~~w~~~g~~la~~~~~~~v~v~~  561 (564)
                      +|+.||.|++||+..         ...++++.++ +.|++++|+  +++|++|+.||+|+|||
T Consensus       233 sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         233 SGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             EEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             EEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence            999999999999643         2356777654 468899994  67899999999999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.98  E-value=2.6e-30  Score=248.99  Aligned_cols=244  Identities=16%  Similarity=0.181  Sum_probs=202.2

Q ss_pred             CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEe-ecccCeEEEEcCCCceEEEEeCCCeEEEE
Q 008467          306 GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE-FHSGPTLDVDWRNNVSFATSSTDNMIYVC  384 (564)
Q Consensus       306 ~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~~~  384 (564)
                      |.+...+.+|.++|++|+|+|++++|+||+.||+|++||+.+++....+. .|...+.++.|.++..+++++.|+.+++|
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~   81 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVV   81 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEE
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEe
Confidence            45678899999999999999999999999999999999999998887764 57888999999888888899999999999


Q ss_pred             EcCCCce---eeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCC
Q 008467          385 KIGENRP---IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQ  461 (564)
Q Consensus       385 ~~~~~~~---~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~  461 (564)
                      +......   ......+...+.+++|+|++.++++++ ++.+++|+....  ....  ....+.+++|+|++.       
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~~--~~~~--~~~~~~~~~~s~~~~-------  149 (299)
T d1nr0a2          82 PAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKL--TEVP--ISYNSSCVALSNDKQ-------  149 (299)
T ss_dssp             CSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTEE--EEEE--CSSCEEEEEECTTSC-------
T ss_pred             ccCCccccccccccccccccccccccccccccccccc-cccccccccccc--cccc--ccccccccccccccc-------
Confidence            9765321   223345677899999999999877665 568999985432  2222  334578899999865       


Q ss_pred             cEEEEEEeCCCeEEEEeCCCCeEEE-EEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE---Eec-CCCE
Q 008467          462 QLILASASFDSTVKLWDVELGKLLY-SLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKT---YTG-NGGI  536 (564)
Q Consensus       462 ~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~---~~~-~~~i  536 (564)
                        +|++|+.||.|++||+++++... ....|..+|++++|+|++++|++|+.|+.|++|++.++.....   +.. ...|
T Consensus       150 --~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v  227 (299)
T d1nr0a2         150 --FVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKV  227 (299)
T ss_dssp             --EEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCE
T ss_pred             --cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence              78999999999999998877543 3456889999999999999999999999999999988765433   222 3569


Q ss_pred             EEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          537 FEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       537 ~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      .+++|+|+|++||+|+.|+.|.|||++
T Consensus       228 ~~l~~s~~~~~l~sgs~dg~i~iwd~~  254 (299)
T d1nr0a2         228 ACVSWSPDNVRLATGSLDNSVIVWNMN  254 (299)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             ccccccccccceEEEcCCCEEEEEECC
Confidence            999999999999999999999999975

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=6.8e-30  Score=244.53  Aligned_cols=261  Identities=20%  Similarity=0.276  Sum_probs=210.0

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeE
Q 008467          273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ  352 (564)
Q Consensus       273 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~  352 (564)
                      +|..+|++++|+|    |+||+.||.|++|+...    ....|...|.++.|++++ .+++++.|+++++|++...+.  
T Consensus        11 gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~----~~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~~--   79 (287)
T d1pgua2          11 GHNKGITALTVNP----LISGSYDGRIMEWSSSS----MHQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHEF--   79 (287)
T ss_dssp             CCSSCEEEEETTT----TEEEETTSCEEETTTTE----EECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEEEC--
T ss_pred             CCCCceEEEEECc----EEEEeCCCeEEEEECCC----CCCCCCCCEEEEEecCCC-eEEEEeecccccccccccccc--
Confidence            4678999999998    89999999999999754    346899999999998764 689999999999999765321  


Q ss_pred             EEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCC-cEEEEeCCCC
Q 008467          353 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV-TAKIWNMKQD  431 (564)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg-~i~iwd~~~~  431 (564)
                           ...+..+.+.++..++....++.+.+|+......+..+..+ ..+  .++++++..+++++.|+ .+++|++...
T Consensus        80 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~v~~~~~~~v~~~~~~~~  151 (287)
T d1pgua2          80 -----GSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLN-SPG--SAVSLSQNYVAVGLEEGNTIQVFKLSDL  151 (287)
T ss_dssp             -----SSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECS-SCE--EEEEECSSEEEEEETTTSCEEEEETTEE
T ss_pred             -----ccceeeeeeccCCceEEEeecccceeeeccceeeeeecccc-cee--eeeeccCcceeeeccccceeeeeecccc
Confidence                 22344556666777777778888999999888877776543 233  45566778888777765 7999999876


Q ss_pred             eeeeecc-cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEE-EeCCCCCEEEEEEcCC------
Q 008467          432 KYVHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYS-LNGHREPVYSLAFSPT------  503 (564)
Q Consensus       432 ~~~~~~~-~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~h~~~i~~~~~spd------  503 (564)
                      .....+. .|...+.+++|+|++.         +|++|+.||.|++||+.+++.+.. +.+|..+|++++|+|+      
T Consensus       152 ~~~~~~~~~~~~~v~~~~~s~~~~---------~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~  222 (287)
T d1pgua2         152 EVSFDLKTPLRAKPSYISISPSET---------YIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANE  222 (287)
T ss_dssp             EEEEECSSCCSSCEEEEEECTTSS---------EEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC-----
T ss_pred             ceeeeeeeccCCceeEEEeccCcc---------ccccccccccccceeecccccccccccccccccceeeeccccccccc
Confidence            6655544 4778899999999875         799999999999999999887654 6789999999999875      


Q ss_pred             ----CCEEEEEeCCCcEEEEeCCC-CeEEEEEec-CCCEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467          504 ----GEYLASGSLDKSMHIWSLKE-GKIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVLDF  562 (564)
Q Consensus       504 ----g~~lasgs~dg~i~iw~~~~-~~~~~~~~~-~~~i~~~~w~~~g~~la~~~~~~~v~v~~~  562 (564)
                          +.+||+|+.|++|+||++++ ++++..+.+ ...|.+++|+|++ .|++++.|+.|+|||+
T Consensus       223 ~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         223 EEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             -CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             ccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence                46899999999999999976 456666554 4579999999987 5788889999999996

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2e-28  Score=238.75  Aligned_cols=270  Identities=24%  Similarity=0.457  Sum_probs=219.6

Q ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCccee
Q 008467          273 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK  351 (564)
Q Consensus       273 ~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~  351 (564)
                      +|...|.+ +++++|++|+||+.||.|+|||.. +++..++.+|.++|++++|+|+  +|++|+.|+++++|+.......
T Consensus        14 GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~   90 (342)
T d2ovrb2          14 GHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECI   90 (342)
T ss_dssp             CSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEE
T ss_pred             CcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccce
Confidence            35566754 355678999999999999999974 6778889999999999999874  9999999999999999887666


Q ss_pred             EEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 008467          352 QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD  431 (564)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~  431 (564)
                      .........+..... ....+..+..|+.+.+|+....+....+..+......  +.+....+++++.|+.|++||....
T Consensus        91 ~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~~i~~~d~~~~  167 (342)
T d2ovrb2          91 HTLYGHTSTVRCMHL-HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC--VQYDGRRVVSGAYDFMVKVWDPETE  167 (342)
T ss_dssp             EEECCCSSCEEEEEE-ETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEE--EEECSSCEEEEETTSCEEEEEGGGT
T ss_pred             ecccccceeEeeeec-ccccccccccceeEEEeecccccceeeeeccccccee--eccccceeeeecCCCeEEEeecccc
Confidence            555544444444333 3345667888999999999988877776655554433  3445678899999999999999999


Q ss_pred             eeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe
Q 008467          432 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGS  511 (564)
Q Consensus       432 ~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs  511 (564)
                      ..+..+..|...+..+.+.+  .         .|++|+.||+|++||++.++++..+.+|...|.++++++  ++|++|+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~--~---------~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s  234 (342)
T d2ovrb2         168 TCLHTLQGHTNRVYSLQFDG--I---------HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGN  234 (342)
T ss_dssp             EEEEEECCCSSCEEEEEECS--S---------EEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TEEEEEE
T ss_pred             eeeEEEcCcccccccccCCC--C---------EEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--CEEEEEc
Confidence            99999999988877776643  2         689999999999999999999999999999999888765  5999999


Q ss_pred             CCCcEEEEeCCCCeEEEEEecC----CCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          512 LDKSMHIWSLKEGKIVKTYTGN----GGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       512 ~dg~i~iw~~~~~~~~~~~~~~----~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      .||.|++|++...+....+...    ..+..++|  +++++++|+.||.|+|||++
T Consensus       235 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~  288 (342)
T d2ovrb2         235 ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLK  288 (342)
T ss_dssp             TTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETT
T ss_pred             CCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECC
Confidence            9999999999999888777642    34556655  46799999999999999975

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.97  E-value=5.7e-30  Score=252.73  Aligned_cols=315  Identities=11%  Similarity=0.111  Sum_probs=228.8

Q ss_pred             EEEEECC-CCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCC-
Q 008467          220 CACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDG-  297 (564)
Q Consensus       220 ~~~~~sp-~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg-  297 (564)
                      +.-.||| ||+++|+++ +|.|++|++.++...              +.     .|...|.+++|+|||++|++++.+. 
T Consensus         6 ~~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~--------------~~-----~~~~~v~~~~~spDg~~l~~~~~~~g   65 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL--------------KV-----PEPLRIRYVRRGGDTKVAFIHGTREG   65 (360)
T ss_dssp             GEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE--------------EC-----SCCSCEEEEEECSSSEEEEEEEETTE
T ss_pred             hcccccCCCCCEEEEEE-CCeEEEEECCCCcEE--------------Ec-----cCCCCEEEEEECCCCCEEEEEEcCCC
Confidence            4567999 899999986 579999998765311              11     2456799999999999998877653 


Q ss_pred             -eEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCce-EEEE
Q 008467          298 -QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS-FATS  375 (564)
Q Consensus       298 -~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  375 (564)
                       .|++|+..+.....+..|...|.+++|+|+|++|++++.++.+++|++.++.....+..+...+.++.|.++.. ++.+
T Consensus        66 ~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~  145 (360)
T d1k32a3          66 DFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYG  145 (360)
T ss_dssp             EEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEE
T ss_pred             CEEEEEECCCCcEEEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeee
Confidence             79999998888888899999999999999999999999999999999999998888888888888888876644 3322


Q ss_pred             ----------eCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEE
Q 008467          376 ----------STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY  445 (564)
Q Consensus       376 ----------~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~  445 (564)
                                ..++.+++|+...++... +..|...+.+++|+|+|+.|++++.|+.+++|+........   .+...++
T Consensus       146 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~---~~~~~~~  221 (360)
T d1k32a3         146 FPLKHGETDGYVMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSF---EVVSKPF  221 (360)
T ss_dssp             EEECSSTTCSCCEEEEEEEETTTTEEEE-CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEEC---CSCBEEE
T ss_pred             ccccccceeeccccceeeeccccCceee-ecccccccccccccCCCCEEEEEeCCCceEcccccccceee---ccccceE
Confidence                      234568899998776544 44567788899999999999999999999999976544321   1222233


Q ss_pred             EEEEccCCCC--CCCCCCcEEEEEEeCCC-----eEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCC---CEEEEEeCCCc
Q 008467          446 TIRWSPTGSG--TNNPNQQLILASASFDS-----TVKLWDVELGKLLYSLNGHREPVYSLAFSPTG---EYLASGSLDKS  515 (564)
Q Consensus       446 ~i~~~p~~~~--~~~~~~~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg---~~lasgs~dg~  515 (564)
                      .+.+++....  ...++.. .++++..+.     .+..+++..+.. ..+..+...+..+.+.+.+   .++++++.++.
T Consensus       222 ~~~~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (360)
T d1k32a3         222 VIPLIPGSPNPTKLVPRSM-TSEAGEYDLNDMYKRSSPINVDPGDY-RMIIPLESSILIYSVPVHGEFAAYYQGAPEKGV  299 (360)
T ss_dssp             EEESSTTCCCGGGCCCGGG-SCCCCCCCCTTGGGGCEECSCCCBCE-EEEEECSSEEEEEECCCCCSHHHHHHCCCCCEE
T ss_pred             EEecccCccccceECCCcC-cccccceeecccccceeecccCcCce-eEeeecCCCceEEEEEecCCCeeEEEecCCCCE
Confidence            3433332211  0111111 122222221     233334444433 3344455556666655544   57889999999


Q ss_pred             EEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          516 MHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       516 i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      |++||+.++++.. +.  +.|.+++|+|||++|++++.||.|.|||+.
T Consensus       300 i~~~d~~~~~~~~-~~--~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~  344 (360)
T d1k32a3         300 LLKYDVKTRKVTE-VK--NNLTDLRLSADRKTVMVRKDDGKIYTFPLE  344 (360)
T ss_dssp             EEEEETTTCCEEE-EE--EEEEEEEECTTSCEEEEEETTSCEEEEESS
T ss_pred             EEEEECCCCeEEE-ec--CCcCEEEECCCCCEEEEEECCCeEEEEECC
Confidence            9999999887543 22  348899999999999999999999999975

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.5e-27  Score=237.64  Aligned_cols=241  Identities=18%  Similarity=0.253  Sum_probs=180.7

Q ss_pred             eecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcce------eEEEeecccCeEE------EEcC--CCceEEEEe
Q 008467          311 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW------KQQFEFHSGPTLD------VDWR--NNVSFATSS  376 (564)
Q Consensus       311 ~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~------~~~~~~~~~~~~~------~~~~--~~~~~~~~~  376 (564)
                      ..++|.+.|+++++++  ++++|+|.|++|+|||..+...      ......+...+..      +...  ....+++++
T Consensus         9 ~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~   86 (393)
T d1sq9a_           9 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS   86 (393)
T ss_dssp             ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             cCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEe
Confidence            4578999999999865  6999999999999999765432      1111122222111      1111  123467888


Q ss_pred             CCCeEEEEEcCCCceeeEe----------cCCCcceEEEEECCC-----CCEEEEEeCCCcEEEEeCCCCe---------
Q 008467          377 TDNMIYVCKIGENRPIKTF----------AGHQGEVNCVKWDPT-----GSLLASCSDDVTAKIWNMKQDK---------  432 (564)
Q Consensus       377 ~d~~i~~~~~~~~~~~~~~----------~~h~~~i~~v~~~~~-----~~~las~s~dg~i~iwd~~~~~---------  432 (564)
                      .|+.+.+|++........+          ..+...+..++|.++     +.++++++.||++++|++....         
T Consensus        87 ~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~  166 (393)
T d1sq9a_          87 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN  166 (393)
T ss_dssp             TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC
T ss_pred             CCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeee
Confidence            9999999987543322111          123456777888765     4678999999999999974221         


Q ss_pred             ---------eeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEE------eCCCCCEEE
Q 008467          433 ---------YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL------NGHREPVYS  497 (564)
Q Consensus       433 ---------~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~------~~h~~~i~~  497 (564)
                               .......+...+.+++|+|++          +|++|+.||+|+|||+.+++.+..+      .+|..+|++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg----------~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~  236 (393)
T d1sq9a_         167 WSPTLELQGTVESPMTPSQFATSVDISERG----------LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS  236 (393)
T ss_dssp             CCCEEEEEEEECCSSSSCCCCCEEEECTTS----------EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEE
T ss_pred             eccceecccceecccCCCCcEEEEEECCCC----------EEEEEeCCCcEEEEeecccccccccccccccccccceEEE
Confidence                     111222345567889998875          6899999999999999999887654      468899999


Q ss_pred             EEEcCCCCEEEEEeCCCc---EEEEeCCCCeEEEEEe--------------cCCCEEEEEEccCCCEEEEEEcCCcEEEE
Q 008467          498 LAFSPTGEYLASGSLDKS---MHIWSLKEGKIVKTYT--------------GNGGIFEVCWNKEGDKIAACFANHTVCVL  560 (564)
Q Consensus       498 ~~~spdg~~lasgs~dg~---i~iw~~~~~~~~~~~~--------------~~~~i~~~~w~~~g~~la~~~~~~~v~v~  560 (564)
                      ++|||||++|++|+.|++   |++||+++++.+.++.              +...|++++|+|+|++|++|+.|++|+||
T Consensus       237 l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vW  316 (393)
T d1sq9a_         237 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW  316 (393)
T ss_dssp             EEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred             cccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEE
Confidence            999999999999999874   9999999999888874              23569999999999999999999999999


Q ss_pred             Eee
Q 008467          561 DFR  563 (564)
Q Consensus       561 ~~~  563 (564)
                      |++
T Consensus       317 d~~  319 (393)
T d1sq9a_         317 DVK  319 (393)
T ss_dssp             ETT
T ss_pred             ECC
Confidence            975

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=9.3e-26  Score=228.55  Aligned_cols=311  Identities=12%  Similarity=0.064  Sum_probs=215.3

Q ss_pred             CEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCc-
Q 008467          229 SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD-  307 (564)
Q Consensus       229 ~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~-  307 (564)
                      -++++++.||+|+|||+.+++..             ..+..     ...+..++|||||++|++++.||.+++||.... 
T Consensus        33 ~~~V~~~~dg~v~vwD~~t~~~~-------------~~l~~-----g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~   94 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDSKKIV-------------KVIDT-----GYAVHISRMSASGRYLLVIGRDARIDMIDLWAKE   94 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTCSEE-------------EEEEC-----CSSEEEEEECTTSCEEEEEETTSEEEEEETTSSS
T ss_pred             EEEEEEcCCCEEEEEECCCCcEE-------------EEEeC-----CCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCc
Confidence            35688889999999999876532             12211     235899999999999999999999999998643 


Q ss_pred             ee--Ee---ecCCCCCEEEEEeCCCCCEEE-EeeCCCcEEEEECCCcceeEEEeecccCeEEEEc--CCCceEEEEeCCC
Q 008467          308 LK--CT---LSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW--RNNVSFATSSTDN  379 (564)
Q Consensus       308 ~~--~~---~~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~  379 (564)
                      ..  ..   ..+|.+.+.++.|+|+|++++ ++..++++++||..++........+...+....+  ......+..+.++
T Consensus        95 ~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~  174 (426)
T d1hzua2          95 PTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEH  174 (426)
T ss_dssp             CEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSS
T ss_pred             eeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCC
Confidence            21  12   235677788889999999875 4558899999999999888777655543322222  2222333333333


Q ss_pred             -----------eEEEEEcCCCce-eeEecCCCcceEEEEECCCCCEEEEEe-CCCcEEEEeCCCCeeeeecccc--cccE
Q 008467          380 -----------MIYVCKIGENRP-IKTFAGHQGEVNCVKWDPTGSLLASCS-DDVTAKIWNMKQDKYVHDLREH--SKEI  444 (564)
Q Consensus       380 -----------~i~~~~~~~~~~-~~~~~~h~~~i~~v~~~~~~~~las~s-~dg~i~iwd~~~~~~~~~~~~~--~~~i  444 (564)
                                 .+.++....... .....++...+..+.|+|++++++++. .+..+.+|+..+++.+..+...  ....
T Consensus       175 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (426)
T d1hzua2         175 PEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPG  254 (426)
T ss_dssp             SEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCS
T ss_pred             CEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCccccc
Confidence                       333333333222 223345667788999999999877665 5667899999998877654322  1112


Q ss_pred             EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-------CeEEEEEeCCCCCEEEEEEcCCCCEEEE-------E
Q 008467          445 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-------GKLLYSLNGHREPVYSLAFSPTGEYLAS-------G  510 (564)
Q Consensus       445 ~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-------~~~~~~~~~h~~~i~~~~~spdg~~las-------g  510 (564)
                      ....+.+.+.      .....++.+.|+.+.+|+...       ++...++.+|...+..++|||||++|++       +
T Consensus       255 ~~~~~~~~~~------~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~  328 (426)
T d1hzua2         255 RGANFVHPKY------GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDA  328 (426)
T ss_dssp             CCEEEEETTT------EEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSH
T ss_pred             ceeeeecCCC------CceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCc
Confidence            2233322221      112334455688888888654       4788899999999999999999999994       5


Q ss_pred             eCCCcEEEEeCCCCeEEEEEe----------cCCCEEEEEEccCCCEEEE-EE----cCCcEEEEEee
Q 008467          511 SLDKSMHIWSLKEGKIVKTYT----------GNGGIFEVCWNKEGDKIAA-CF----ANHTVCVLDFR  563 (564)
Q Consensus       511 s~dg~i~iw~~~~~~~~~~~~----------~~~~i~~~~w~~~g~~la~-~~----~~~~v~v~~~~  563 (564)
                      +.|++|+|||+.+++.+.+..          +...+..++|||||+++.+ ++    .++.|.|||.+
T Consensus       329 ~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~  396 (426)
T d1hzua2         329 RISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDK  396 (426)
T ss_dssp             HHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETT
T ss_pred             ccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECC
Confidence            668899999999998765542          2345899999999997754 32    46779999864

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=3.3e-26  Score=225.40  Aligned_cols=288  Identities=9%  Similarity=0.016  Sum_probs=210.2

Q ss_pred             CCccceEEEEECCCCCEEEEEECCC--cEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEE
Q 008467          214 GHTSEVCACAWSPAGSLLASGSGDS--TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA  291 (564)
Q Consensus       214 ~h~~~V~~~~~sp~~~~lasgs~D~--~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~  291 (564)
                      +|...|.+++|+|||++|++++.|.  .+++|++.++..              ..    ...+...|.+++|+|+|++|+
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~--------------~~----~~~~~~~v~~~~~spdg~~l~  101 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA--------------EK----FEENLGNVFAMGVDRNGKFAV  101 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE--------------EE----CCCCCCSEEEEEECTTSSEEE
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE--------------EE----eeCCCceEEeeeecccccccc
Confidence            7999999999999999998877554  799999876531              11    123567899999999999999


Q ss_pred             EEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEeCCCCCEEEEee----------CCCcEEEEECCCcceeEEEeecccC
Q 008467          292 TGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGS----------CDKTAIVWDVKTEEWKQQFEFHSGP  360 (564)
Q Consensus       292 sg~~dg~i~vw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s----------~D~~v~iwd~~~~~~~~~~~~~~~~  360 (564)
                      +++.++.+++|+..+ .....+..|...+.+++|+|+|++|+.++          .++.+++||+.+++..... .+...
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~  180 (360)
T d1k32a3         102 VANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT-TENSH  180 (360)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS-CSSSB
T ss_pred             eeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeec-ccccc
Confidence            999999999999865 45567788999999999999999998543          3457999999887654433 34445


Q ss_pred             eEEEEcCCC-ceEEEEeCCCeEEEEEcCCCc-------eeeEecCCCcceEEEEECCCCCEEEEEeCCCc---EEEEe--
Q 008467          361 TLDVDWRNN-VSFATSSTDNMIYVCKIGENR-------PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVT---AKIWN--  427 (564)
Q Consensus       361 ~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~-------~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~---i~iwd--  427 (564)
                      ...+.|..+ ..++.++.++.+.+|+.....       ....+..|...+..+.|++++..++++..+..   .++|.  
T Consensus       181 ~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  260 (360)
T d1k32a3         181 DYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPIN  260 (360)
T ss_dssp             EEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECS
T ss_pred             cccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecc
Confidence            556666554 567888899999998865432       12333455556666778888877766654432   23443  


Q ss_pred             CCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEE
Q 008467          428 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYL  507 (564)
Q Consensus       428 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~l  507 (564)
                      ...+. ...+..+...+..+.+.+.+.      ...++++++.++.|++||+.+++.. .   |...|.+++|||||++|
T Consensus       261 ~~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~~d~~~~~~~-~---~~~~v~~~~~SpDG~~l  329 (360)
T d1k32a3         261 VDPGD-YRMIIPLESSILIYSVPVHGE------FAAYYQGAPEKGVLLKYDVKTRKVT-E---VKNNLTDLRLSADRKTV  329 (360)
T ss_dssp             CCCBC-EEEEEECSSEEEEEECCCCCS------HHHHHHCCCCCEEEEEEETTTCCEE-E---EEEEEEEEEECTTSCEE
T ss_pred             cCcCc-eeEeeecCCCceEEEEEecCC------CeeEEEecCCCCEEEEEECCCCeEE-E---ecCCcCEEEECCCCCEE
Confidence            33333 233444555566666555432      1225678889999999999987653 2   34468999999999999


Q ss_pred             EEEeCCCcEEEEeCCCCeEEEEEe
Q 008467          508 ASGSLDKSMHIWSLKEGKIVKTYT  531 (564)
Q Consensus       508 asgs~dg~i~iw~~~~~~~~~~~~  531 (564)
                      ++++.||.|++|++++++...++.
T Consensus       330 ~~~~~Dg~i~v~d~~~~~~~~~~~  353 (360)
T d1k32a3         330 MVRKDDGKIYTFPLEKPEDERTVE  353 (360)
T ss_dssp             EEEETTSCEEEEESSCTTSCEECC
T ss_pred             EEEECCCeEEEEECCCCCcceEEE
Confidence            999999999999999987766653

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.92  E-value=1.9e-21  Score=185.91  Aligned_cols=261  Identities=13%  Similarity=0.129  Sum_probs=204.5

Q ss_pred             EEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEE-EEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcC
Q 008467          290 LATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR  367 (564)
Q Consensus       290 l~sg~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  367 (564)
                      .++++.|+.|.+||.. ++...++... ..+.+++|+|+|++| ++++.+++|++||+.+++.+..+..+..+ ..+.+.
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~-~~~~~~   82 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSP-QGVAVS   82 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSE-EEEEEC
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccccc-cccccc
Confidence            3466789999999975 4555555543 456899999999987 56778999999999999988887766543 455554


Q ss_pred             C--CceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEE-EEeCCCcEEEEeCCCCeeeeecccccccE
Q 008467          368 N--NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVTAKIWNMKQDKYVHDLREHSKEI  444 (564)
Q Consensus       368 ~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~la-s~s~dg~i~iwd~~~~~~~~~~~~~~~~i  444 (564)
                      .  ...++++..++.+.+|+.........+..+ ....++.|+|++..++ ++..++.+.+|+..+...+..+..+ ...
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  160 (301)
T d1l0qa2          83 PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSP  160 (301)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSE
T ss_pred             cccccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC-CCc
Confidence            3  345667778889999999988887777654 4567899999998765 5566889999999999888776554 456


Q ss_pred             EEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEeC
Q 008467          445 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL---DKSMHIWSL  521 (564)
Q Consensus       445 ~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~---dg~i~iw~~  521 (564)
                      ..+.++|++.        .+++++..++.+.+|+....+....+..+ ..+..++|+++|..++.++.   ++.|++||+
T Consensus       161 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~  231 (301)
T d1l0qa2         161 KGIAVTPDGT--------KVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDT  231 (301)
T ss_dssp             EEEEECTTSS--------EEEEEETTTTEEEEEETTTTEEEEEEECS-SEEEEEEECTTSSEEEEEEECSSCCEEEEEET
T ss_pred             eEEEeecccc--------ceeeecccccccccccccceeeeeccccc-CCcceeeccccccccccccccceeeeeeeeec
Confidence            8889988764        34445555678889998888777776644 45688999999998876543   468999999


Q ss_pred             CCCeEEEEEecCCCEEEEEEccCCCEE-EEEEcCCcEEEEEee
Q 008467          522 KEGKIVKTYTGNGGIFEVCWNKEGDKI-AACFANHTVCVLDFR  563 (564)
Q Consensus       522 ~~~~~~~~~~~~~~i~~~~w~~~g~~l-a~~~~~~~v~v~~~~  563 (564)
                      .+++++..+.....+..++|+|||++| +++..+++|.|||+.
T Consensus       232 ~t~~~~~~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~  274 (301)
T d1l0qa2         232 GTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTA  274 (301)
T ss_dssp             TTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             CCCeEEEEEcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECC
Confidence            999999998887889999999999987 566778999999974

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.92  E-value=5.5e-24  Score=215.30  Aligned_cols=305  Identities=12%  Similarity=0.039  Sum_probs=198.1

Q ss_pred             CEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC-c
Q 008467          229 SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-D  307 (564)
Q Consensus       229 ~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~-~  307 (564)
                      -++++.+.||+|.|||..+++..             ..+..     ...+..++|||||+++++++.||.+++||... .
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~-------------~~~~~-----g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~   94 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIK-------------TVLDT-----GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKE   94 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEE-------------EEEEC-----SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSS
T ss_pred             EEEEEEcCCCEEEEEECCCCcEE-------------EEEeC-----CCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCC
Confidence            34688999999999999876532             22211     13589999999999999999999999999753 2


Q ss_pred             --eeEe---ecCCCCCEEEEEeCCCCCEE-EEeeCCCcEEEEECCCcceeEEEeecccC-----------eEEEEcC--C
Q 008467          308 --LKCT---LSKHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVKTEEWKQQFEFHSGP-----------TLDVDWR--N  368 (564)
Q Consensus       308 --~~~~---~~~h~~~V~~l~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~~~~-----------~~~~~~~--~  368 (564)
                        ....   ...|.+.+.+..|+|||++| ++++.++++++||..+++.+..+..+...           ...+.+.  .
T Consensus        95 ~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg  174 (432)
T d1qksa2          95 PTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR  174 (432)
T ss_dssp             CCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSS
T ss_pred             ceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCC
Confidence              2222   23566777888899999986 67888999999999999988876654321           2223332  2


Q ss_pred             CceEEEEeCCCeEEEEEcCCCceeeEec-CCCcceEEEEECCCCCEEEEEeC-CCcEEEEeCCCCeeeeeccc-----cc
Q 008467          369 NVSFATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDPTGSLLASCSD-DVTAKIWNMKQDKYVHDLRE-----HS  441 (564)
Q Consensus       369 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~h~~~i~~v~~~~~~~~las~s~-dg~i~iwd~~~~~~~~~~~~-----~~  441 (564)
                      ...+++...++.|.+++....+...... .+...+.+++|+|+|+++++++. ++.+.+||..+.+.+..+..     |.
T Consensus       175 ~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~  254 (432)
T d1qksa2         175 PEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHP  254 (432)
T ss_dssp             SEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCC
T ss_pred             CEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCcccccc
Confidence            2345666778899999987766544333 34456789999999998766665 56889999988877654421     22


Q ss_pred             ccEEEEEEccCCCCCCCCCCcEEEEEE-eCCCeEEEEeCCCCe-------EEEEEeC-----------------------
Q 008467          442 KEIYTIRWSPTGSGTNNPNQQLILASA-SFDSTVKLWDVELGK-------LLYSLNG-----------------------  490 (564)
Q Consensus       442 ~~i~~i~~~p~~~~~~~~~~~~~l~s~-s~dg~i~iwd~~~~~-------~~~~~~~-----------------------  490 (564)
                      .......+...+         .+.++. ..++.|.+|+.....       ....+..                       
T Consensus       255 ~~~~~~~~~~~g---------~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~  325 (432)
T d1qksa2         255 GRGANFVHPTFG---------PVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATL  325 (432)
T ss_dssp             TTCEEEEETTTE---------EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTT
T ss_pred             CcccceecCCCC---------ceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccC
Confidence            222333332221         122222 236677777654321       1111111                       


Q ss_pred             --CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEE-----cCCcEEEEEee
Q 008467          491 --HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACF-----ANHTVCVLDFR  563 (564)
Q Consensus       491 --h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~-----~~~~v~v~~~~  563 (564)
                        |.....++++ ||++.|++++.|+.+++|++.++..+.  .+...+..++|||||++|+++.     .++.|.|||-+
T Consensus       326 ~~~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~l~--~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~  402 (432)
T d1qksa2         326 NPEAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAGIT--EGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDK  402 (432)
T ss_dssp             CSSHHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHHTCC--SSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETT
T ss_pred             CCCCCeeeEEEE-EechhhcccccCCceEecccccccccC--CCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECC
Confidence              1111122333 667777777777777777764432221  2345688999999999887664     35779999853

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1e-23  Score=204.64  Aligned_cols=247  Identities=11%  Similarity=0.060  Sum_probs=181.3

Q ss_pred             eeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeE---EEeecccCeEEEEcCC--CceEEEEeCCCeEE
Q 008467          308 LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ---QFEFHSGPTLDVDWRN--NVSFATSSTDNMIY  382 (564)
Q Consensus       308 ~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~  382 (564)
                      ++....+|...|++|+|+|++++|++||.||+|+|||+.++....   ....|..++.++.|.+  ...+++++.|+.|+
T Consensus         3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~   82 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred             eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccccccee
Confidence            445678999999999999999999999999999999997654332   2235888999999964  34788999999999


Q ss_pred             EEEcCCCceeeEecCCCcc-eEEEEECCCCCEEEEEeCCCcEEEEeCCCCeee----eecccc--cccEEEEEEccCCCC
Q 008467          383 VCKIGENRPIKTFAGHQGE-VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV----HDLREH--SKEIYTIRWSPTGSG  455 (564)
Q Consensus       383 ~~~~~~~~~~~~~~~h~~~-i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~----~~~~~~--~~~i~~i~~~p~~~~  455 (564)
                      +|+............+... .....+.++...+++++.|+++++||++.....    .....+  ........+.+.+. 
T Consensus        83 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  161 (342)
T d1yfqa_          83 KVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS-  161 (342)
T ss_dssp             EECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS-
T ss_pred             eeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCC-
Confidence            9999887766666555443 445566778889999999999999997643322    222222  11223334444432 


Q ss_pred             CCCCCCcEEEEEEeCCCeEEEEeCCCCeEE---EEEeCCCCCEEEEEEc-CCCCEEEEEeCCCcEEEEeCCCCeE-----
Q 008467          456 TNNPNQQLILASASFDSTVKLWDVELGKLL---YSLNGHREPVYSLAFS-PTGEYLASGSLDKSMHIWSLKEGKI-----  526 (564)
Q Consensus       456 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~---~~~~~h~~~i~~~~~s-pdg~~lasgs~dg~i~iw~~~~~~~-----  526 (564)
                              .+++++.|+.|++||+......   .....+...+.+..+. +++..+++++.||.+.+|+......     
T Consensus       162 --------~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~  233 (342)
T d1yfqa_         162 --------RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS  233 (342)
T ss_dssp             --------EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCT
T ss_pred             --------ceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeecc
Confidence                    6889999999999998765432   2333444556666554 5678999999999999999865421     


Q ss_pred             -EEEEe----------cCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          527 -VKTYT----------GNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       527 -~~~~~----------~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                       ...+.          ....+.+++|+|+|++||+|+.||.|+|||++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~  281 (342)
T d1yfqa_         234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ  281 (342)
T ss_dssp             TCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred             ccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECC
Confidence             11111          12357899999999999999999999999975

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.91  E-value=4e-21  Score=183.60  Aligned_cols=271  Identities=12%  Similarity=0.141  Sum_probs=203.8

Q ss_pred             EEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEE-EEEeCCCeEEEEECC-Cce
Q 008467          231 LASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL-ATGSYDGQARIWSTN-GDL  308 (564)
Q Consensus       231 lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l-~sg~~dg~i~vw~~~-~~~  308 (564)
                      .++++.|++|.+||+.+++..             +...     ....+..++|+|||++| ++++.++.|++||.. +..
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~-------------~~i~-----~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~   66 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVT-------------ATIP-----VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV   66 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEE-------------EEEE-----CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE
T ss_pred             EEEECCCCEEEEEECCCCeEE-------------EEEE-----CCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCce
Confidence            356779999999999876421             1111     12347889999999987 466788999999976 455


Q ss_pred             eEeecCCCCCEEEEEeCCCCCEEE-EeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCC--CceEEEEeCCCeEEEEE
Q 008467          309 KCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN--NVSFATSSTDNMIYVCK  385 (564)
Q Consensus       309 ~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~  385 (564)
                      ...+..|.. +..+.|++++.+++ ++..++.+.+|+..+++....+..+.. ...+.+..  ...++++..+..+.+|+
T Consensus        67 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~~~~~~~~~  144 (301)
T d1l0qa2          67 IATVPAGSS-PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKS-PLGLALSPDGKKLYVTNNGDKTVSVIN  144 (301)
T ss_dssp             EEEEECSSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             eeeeecccc-ccccccccccccccccccccceeeecccccceeeeecccccc-ceEEEeecCCCeeeeeeccccceeeee
Confidence            566666654 58899999998755 566778999999999888777765543 34455543  34456777888999999


Q ss_pred             cCCCceeeEecCCCcceEEEEECCCCCEEEEEeCC-CcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEE
Q 008467          386 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD-VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLI  464 (564)
Q Consensus       386 ~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~d-g~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~  464 (564)
                      ......+..+..+ ..+.+++++|+++.+++++.+ +.+.+|+.........+..+ .....++|++++.        .+
T Consensus       145 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~--------~~  214 (301)
T d1l0qa2         145 TVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGT--------KA  214 (301)
T ss_dssp             TTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SEEEEEEECTTSS--------EE
T ss_pred             ccccceeeecccC-CCceEEEeeccccceeeecccccccccccccceeeeeccccc-CCcceeecccccc--------cc
Confidence            9998888777654 457789999999988777665 66778887777666555443 4567888988775        22


Q ss_pred             EEEE--eCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCeEEEEEec
Q 008467          465 LASA--SFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYL-ASGSLDKSMHIWSLKEGKIVKTYTG  532 (564)
Q Consensus       465 l~s~--s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~l-asgs~dg~i~iw~~~~~~~~~~~~~  532 (564)
                      ++++  ..+++|++||+.+++.+..+..+ ..+.+++|||||++| ++++.|++|++||+.++++++++..
T Consensus       215 ~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~v  284 (301)
T d1l0qa2         215 YVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV  284 (301)
T ss_dssp             EEEEECSSCCEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             ccccccceeeeeeeeecCCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence            3332  34578999999999998888754 457999999999987 6778899999999999999988864

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.91  E-value=3.5e-23  Score=209.36  Aligned_cols=312  Identities=13%  Similarity=0.046  Sum_probs=201.6

Q ss_pred             eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467          209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  288 (564)
Q Consensus       209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  288 (564)
                      +..+..|. .+..++|||||++|++++.|+++++||+.+++..        ....+...    ..+...+.+++|+|||+
T Consensus        55 ~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~--------~~~~i~~~----~~~~~~~~s~~~spDG~  121 (426)
T d1hzua2          55 VKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPT--------KVAEIKIG----IEARSVESSKFKGYEDR  121 (426)
T ss_dssp             EEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCE--------EEEEEECC----SEEEEEEECCSTTCTTT
T ss_pred             EEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCcee--------EEEEEeCC----CCCcceEEeeeecCCCC
Confidence            34566664 5899999999999999999999999999876521        11111111    11233466778999999


Q ss_pred             EEEE-EeCCCeEEEEECCC-ceeEeecCCCCC-----------EEEEEeCCCCCEEEEeeCC-CcEEEEECCCcceeE-E
Q 008467          289 LLAT-GSYDGQARIWSTNG-DLKCTLSKHKGP-----------IFSLKWNKKGDYLLTGSCD-KTAIVWDVKTEEWKQ-Q  353 (564)
Q Consensus       289 ~l~s-g~~dg~i~vw~~~~-~~~~~~~~h~~~-----------V~~l~~~~~~~~l~s~s~D-~~v~iwd~~~~~~~~-~  353 (564)
                      ++++ +..++.+++||... .....+..|...           ...+.+++++..++....+ +.+.+++........ .
T Consensus       122 ~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~  201 (426)
T d1hzua2         122 YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVT  201 (426)
T ss_dssp             EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEE
T ss_pred             EEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeE
Confidence            8755 55889999999764 444444444433           3445555555554443332 344445444333222 2


Q ss_pred             EeecccCeEEEEcCCC--ceEEEEeCCCeEEEEEcCCCceeeEecCC--CcceEEEEECCCCC--E-EEEEeCCCcEEEE
Q 008467          354 FEFHSGPTLDVDWRNN--VSFATSSTDNMIYVCKIGENRPIKTFAGH--QGEVNCVKWDPTGS--L-LASCSDDVTAKIW  426 (564)
Q Consensus       354 ~~~~~~~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~h--~~~i~~v~~~~~~~--~-las~s~dg~i~iw  426 (564)
                      ...+.....++.+.++  ..+++...+..+.+++....+.+..+...  ......+.+.+.+.  . .++.+.|+.+.+|
T Consensus       202 ~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~  281 (426)
T d1hzua2         202 SIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLI  281 (426)
T ss_dssp             EEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEE
T ss_pred             EeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEe
Confidence            2234445566666544  34556667788899999888776555422  11222233222222  1 1233446677777


Q ss_pred             eCCC-------CeeeeecccccccEEEEEEccCCCCCCCCCCcEEEE-------EEeCCCeEEEEeCCCCeEEEEEe---
Q 008467          427 NMKQ-------DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILA-------SASFDSTVKLWDVELGKLLYSLN---  489 (564)
Q Consensus       427 d~~~-------~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~-------s~s~dg~i~iwd~~~~~~~~~~~---  489 (564)
                      +...       .+....+.+|...+..++|+|++.         .|+       +++.|++|+|||+.+++...++.   
T Consensus       282 ~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~---------~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~  352 (426)
T d1hzua2         282 GTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSS---------HLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIA  352 (426)
T ss_dssp             ECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCS---------EEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHH
T ss_pred             eccccccccccceEeEEEecCCCceeEEEcCCCCc---------eEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccc
Confidence            6543       356778889999999999999986         455       35568899999999987665542   


Q ss_pred             ------CCCCCEEEEEEcCCCCEEE-EE----eCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCE
Q 008467          490 ------GHREPVYSLAFSPTGEYLA-SG----SLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDK  547 (564)
Q Consensus       490 ------~h~~~i~~~~~spdg~~la-sg----s~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~  547 (564)
                            .|...|.+++|||||++|+ ++    +.+|.|+|||.+++++.+...+..     ...|+|++
T Consensus       353 ~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~-----~~tp~Gk~  416 (426)
T d1hzua2         353 EWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR-----LITPTGKF  416 (426)
T ss_dssp             HHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT-----CCSEEEEE
T ss_pred             hhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCC-----ccCCCceE
Confidence                  3556799999999999774 32    357899999999999988877653     22466655

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.89  E-value=1.1e-21  Score=191.42  Aligned_cols=283  Identities=11%  Similarity=0.022  Sum_probs=193.7

Q ss_pred             EEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEE-EEEeCCCeEE
Q 008467          222 CAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL-ATGSYDGQAR  300 (564)
Q Consensus       222 ~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l-~sg~~dg~i~  300 (564)
                      .+|++++++|++++.|++|.+||+.+++..             +...   .++...+.+++|+|||+++ ++++.++.|+
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~-------------~t~~---~~~~~~p~~l~~spDG~~l~v~~~~~~~v~   65 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVY-------------KSCV---MPDKFGPGTAMMAPDNRTAYVLNNHYGDIY   65 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEE-------------EEEE---CSSCCSSCEEEECTTSSEEEEEETTTTEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEE-------------EEEE---cCCCCCcceEEECCCCCEEEEEECCCCcEE
Confidence            478999999999999999999999876421             1111   1123456799999999987 5556789999


Q ss_pred             EEECCC-ceeEeecCC------CCCEEEEEeCCCCCEEEEee------------CCCcEEEEECCCcceeEEEeeccc--
Q 008467          301 IWSTNG-DLKCTLSKH------KGPIFSLKWNKKGDYLLTGS------------CDKTAIVWDVKTEEWKQQFEFHSG--  359 (564)
Q Consensus       301 vw~~~~-~~~~~~~~h------~~~V~~l~~~~~~~~l~s~s------------~D~~v~iwd~~~~~~~~~~~~~~~--  359 (564)
                      +||... +....+...      ...+..++|+|+|+++++++            .+..+.+||..+++....+..+..  
T Consensus        66 ~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  145 (346)
T d1jmxb_          66 GIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPR  145 (346)
T ss_dssp             EEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCS
T ss_pred             EEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccC
Confidence            999764 333333221      12356789999999988765            467889999888765544433221  


Q ss_pred             CeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCC--------------------------CCE
Q 008467          360 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT--------------------------GSL  413 (564)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~--------------------------~~~  413 (564)
                      ....+.+.++..+...+  ..+.+|+..+.+.+..+..+.. ...+.++|+                          ...
T Consensus       146 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (346)
T d1jmxb_         146 QVYLMRAADDGSLYVAG--PDIYKMDVKTGKYTVALPLRNW-NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQD  222 (346)
T ss_dssp             SCCCEEECTTSCEEEES--SSEEEECTTTCCEEEEECSTTC-CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC------
T ss_pred             ceEEEEecCCCEEEEeC--CcceEEEccCCCEEEEEecCCC-ccceEEeccccEEEEEecCCCceEeeeeeeeeccCcee
Confidence            22223333444343332  3467788777776666544321 112223333                          233


Q ss_pred             EEEEeCCCcEEEEeCCCCeeee-ecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCC
Q 008467          414 LASCSDDVTAKIWNMKQDKYVH-DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR  492 (564)
Q Consensus       414 las~s~dg~i~iwd~~~~~~~~-~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~  492 (564)
                      ++++..+..+.+|+..++.... .+..|...+..+.++|++.         .++.+. ++.|++||..+++.+..+. +.
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~-~~~v~v~d~~~~~~~~~~~-~~  291 (346)
T d1jmxb_         223 PATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP---------NQIYGV-LNRLAKYDLKQRKLIKAAN-LD  291 (346)
T ss_dssp             -CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCT---------TEEEEE-ESEEEEEETTTTEEEEEEE-CS
T ss_pred             EeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCC---------EEEEec-CCeEEEEECCCCcEEEEEc-CC
Confidence            4445556678888888776543 3456777888888888764         244443 4689999999999988776 44


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCC
Q 008467          493 EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG  534 (564)
Q Consensus       493 ~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~  534 (564)
                      ..+.+++|||||++|++++.|+.|+|||+++++.++++...+
T Consensus       292 ~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~  333 (346)
T d1jmxb_         292 HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPG  333 (346)
T ss_dssp             SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSS
T ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECCC
Confidence            578999999999999999999999999999999999887543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=2.9e-21  Score=187.57  Aligned_cols=285  Identities=11%  Similarity=0.067  Sum_probs=198.6

Q ss_pred             CEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEE-EEEeCCCeEEEEECC-C
Q 008467          229 SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL-ATGSYDGQARIWSTN-G  306 (564)
Q Consensus       229 ~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l-~sg~~dg~i~vw~~~-~  306 (564)
                      .+|++++.|++|+|||+.+++.             .+....  ......+.+++|+|||+++ ++++.++.|++||.. +
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~-------------~~~i~~--~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~   66 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAV-------------DKVITI--ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG   66 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEE-------------EEEEEC--TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC
T ss_pred             eEEEEEcCCCEEEEEECCCCeE-------------EEEEEC--CCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence            4799999999999999987542             111111  1123447789999999987 566789999999975 4


Q ss_pred             ceeEeecCCCC-----CEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeE
Q 008467          307 DLKCTLSKHKG-----PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMI  381 (564)
Q Consensus       307 ~~~~~~~~h~~-----~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  381 (564)
                      +....+..+..     .+..++|+|+++++++++.+.....|..                             ...+..+
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~-----------------------------~~~~~~~  117 (337)
T d1pbyb_          67 ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHF-----------------------------EVQPTRV  117 (337)
T ss_dssp             CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCE-----------------------------EECCCEE
T ss_pred             cEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeec-----------------------------cccccce
Confidence            55555554433     3457899999999998876554444321                             1234455


Q ss_pred             EEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCC--CC
Q 008467          382 YVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTN--NP  459 (564)
Q Consensus       382 ~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~--~~  459 (564)
                      .+|+.........+.. ...+.+++|+|+|+++++++.+  +.+||..+++....+..+... ....+.|++....  ..
T Consensus       118 ~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  193 (337)
T d1pbyb_         118 ALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHE  193 (337)
T ss_dssp             EEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCT
T ss_pred             eeccccCCeEEEeccc-cCCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEeecCCcc-ccceecCCcceeecccc
Confidence            6677666666666553 3457789999999999988654  778999988877665433211 1111222221100  00


Q ss_pred             CCc---EEEE----------EEeCCCeEEEEeCCCCeEEE-EEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 008467          460 NQQ---LILA----------SASFDSTVKLWDVELGKLLY-SLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK  525 (564)
Q Consensus       460 ~~~---~~l~----------s~s~dg~i~iwd~~~~~~~~-~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~  525 (564)
                      ...   ....          .++.++.+.+|+..++.... .+..+...+..++++|++.+++++  ++.|++||+.+++
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~  271 (337)
T d1pbyb_         194 SSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNA  271 (337)
T ss_dssp             TTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTE
T ss_pred             ccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCc
Confidence            000   0011          12234569999999887654 345677788999999999998876  4789999999999


Q ss_pred             EEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          526 IVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       526 ~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      ++........+.+++|+|||++|++++.+++|.|||.+
T Consensus       272 ~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~  309 (337)
T d1pbyb_         272 SIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAE  309 (337)
T ss_dssp             EEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETT
T ss_pred             EEEEEcCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence            99998888889999999999999999999999999975

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=1.3e-21  Score=197.68  Aligned_cols=304  Identities=12%  Similarity=0.022  Sum_probs=192.7

Q ss_pred             eeEccCCccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467          209 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  288 (564)
Q Consensus       209 ~~~l~~h~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  288 (564)
                      +..+..| ..+..++|||||++|++++.|+++++||+.++...        ....++..    ..+...+.+..|+|||+
T Consensus        55 ~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~--------~~~~i~~~----~~~~~~~~s~~~SpDG~  121 (432)
T d1qksa2          55 KTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT--------TVAEIKIG----SEARSIETSKMEGWEDK  121 (432)
T ss_dssp             EEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC--------EEEEEECC----SEEEEEEECCSTTCTTT
T ss_pred             EEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCce--------EEEEEecC----CCCCCeEEecccCCCCC
Confidence            3445555 36999999999999999999999999999765421        11111111    11123456667899999


Q ss_pred             EE-EEEeCCCeEEEEECC-CceeEeecC-----------CCCCEEEEEeCCCCCEE-EEeeCCCcEEEEECCCcceeEEE
Q 008467          289 LL-ATGSYDGQARIWSTN-GDLKCTLSK-----------HKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVKTEEWKQQF  354 (564)
Q Consensus       289 ~l-~sg~~dg~i~vw~~~-~~~~~~~~~-----------h~~~V~~l~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~  354 (564)
                      +| ++++.++.+++||.. +.....+..           +.+...++.++|+|.++ ++...++.|.+||..+.+.....
T Consensus       122 ~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~  201 (432)
T d1qksa2         122 YAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTT  201 (432)
T ss_dssp             EEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEE
T ss_pred             EEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEE
Confidence            75 778889999999975 444444433           34556788999999876 56677899999999887765544


Q ss_pred             eecc-cCeEEEEcCCCc--eEEEEeCCCeEEEEEcCCCceeeEecC-----CCcceEEEEECCCCCEEEEEe-CCCcEEE
Q 008467          355 EFHS-GPTLDVDWRNNV--SFATSSTDNMIYVCKIGENRPIKTFAG-----HQGEVNCVKWDPTGSLLASCS-DDVTAKI  425 (564)
Q Consensus       355 ~~~~-~~~~~~~~~~~~--~~~~~~~d~~i~~~~~~~~~~~~~~~~-----h~~~i~~v~~~~~~~~las~s-~dg~i~i  425 (564)
                      .... ....++.+.++.  .++++..++.+.+++....+.+..+..     |........+...+...++.. .++.|.+
T Consensus       202 ~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~  281 (432)
T d1qksa2         202 EISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVAL  281 (432)
T ss_dssp             EEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEE
T ss_pred             EEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEe
Confidence            4333 345666666554  345666677888888877665544321     223333444444444444333 2566666


Q ss_pred             EeCCCCeeeeecccccccEEEEEEccCCCCCC---C------------------------CCCcEEEEEEeCCCeEEEEe
Q 008467          426 WNMKQDKYVHDLREHSKEIYTIRWSPTGSGTN---N------------------------PNQQLILASASFDSTVKLWD  478 (564)
Q Consensus       426 wd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~---~------------------------~~~~~~l~s~s~dg~i~iwd  478 (564)
                      |+.....    ...|...+....++|++....   +                        |+. ..|++++.|+++++|+
T Consensus       282 ~~~~~~~----~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg-~~la~~s~d~~~k~w~  356 (432)
T d1qksa2         282 IGTDPEG----HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDI-KAMTGDGSDPEFKTLP  356 (432)
T ss_dssp             EECCTTT----CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEG-GGCCCSSSCCCEEEEC
T ss_pred             ccccccc----ccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEEEec-hhhcccccCCceEecc
Confidence            6654321    112222333333333221000   0                        011 1367778888888888


Q ss_pred             CCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-----CCCcEEEEeCCCCeEEEEEecC
Q 008467          479 VELGKLLYSLNGHREPVYSLAFSPTGEYLASGS-----LDKSMHIWSLKEGKIVKTYTGN  533 (564)
Q Consensus       479 ~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs-----~dg~i~iw~~~~~~~~~~~~~~  533 (564)
                      +.++.   .+..|...|.+++|||||++|+.+.     .+|.|.|||.+++++.+..++.
T Consensus       357 ~~~~~---~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~  413 (432)
T d1qksa2         357 IAEWA---GITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDE  413 (432)
T ss_dssp             HHHHH---TCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred             ccccc---ccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEeEecCC
Confidence            75442   2235667899999999999886543     4689999999999998887654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.85  E-value=3.2e-20  Score=180.72  Aligned_cols=278  Identities=14%  Similarity=0.057  Sum_probs=196.4

Q ss_pred             EEECCCCCEEEEEeCCCeEEEEECCC-ceeEeec-CCCCCEEEEEeCCCCCEE-EEeeCCCcEEEEECCCcceeEEEeec
Q 008467          281 LDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLS-KHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVKTEEWKQQFEFH  357 (564)
Q Consensus       281 l~~s~~g~~l~sg~~dg~i~vw~~~~-~~~~~~~-~h~~~V~~l~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~  357 (564)
                      ++|++++++|++++.++.|.+||... ++..++. .|...+.+++|+|+|+++ ++++.++.|.+||+.+++....+...
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            46899999999999999999999864 4455554 455667899999999987 55667899999999999887766543


Q ss_pred             ccC------eEEEEcCCCc--eEEEE-----------eCCCeEEEEEcCCCceeeEecCC--CcceEEEEECCCCCEEEE
Q 008467          358 SGP------TLDVDWRNNV--SFATS-----------STDNMIYVCKIGENRPIKTFAGH--QGEVNCVKWDPTGSLLAS  416 (564)
Q Consensus       358 ~~~------~~~~~~~~~~--~~~~~-----------~~d~~i~~~~~~~~~~~~~~~~h--~~~i~~v~~~~~~~~las  416 (564)
                      ...      +..+.+.++.  .+++.           ..+..+.+++...++....+..+  ...+..+.+++++.++++
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA  161 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE
T ss_pred             ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe
Confidence            321      2233443332  22221           24667778877665544333322  234556777888877665


Q ss_pred             EeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCC--C---------------CCcEEEEEEeCCCeEEEEeC
Q 008467          417 CSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNN--P---------------NQQLILASASFDSTVKLWDV  479 (564)
Q Consensus       417 ~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~--~---------------~~~~~l~s~s~dg~i~iwd~  479 (564)
                      +   +.+.+|+..+++.+..+..+.. ...+.++|++.....  .               .....++++..++.+.+||.
T Consensus       162 ~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (346)
T d1jmxb_         162 G---PDIYKMDVKTGKYTVALPLRNW-NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL  237 (346)
T ss_dssp             S---SSEEEECTTTCCEEEEECSTTC-CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEET
T ss_pred             C---CcceEEEccCCCEEEEEecCCC-ccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEEC
Confidence            3   4589999998888777654432 233444554432110  0               01112344555678999999


Q ss_pred             CCCeEEE-EEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEE
Q 008467          480 ELGKLLY-SLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVC  558 (564)
Q Consensus       480 ~~~~~~~-~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~  558 (564)
                      .++.... .+..|...+..+.++|++.+++.+.. +.|.+||..+++++..+.....+.+++|+|||++|+++..++.|.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d~~v~  316 (346)
T d1jmxb_         238 KTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLA  316 (346)
T ss_dssp             TTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEE
T ss_pred             CCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeCCCcEE
Confidence            9887654 35567788999999999999887764 579999999999999888777899999999999999999999999


Q ss_pred             EEEee
Q 008467          559 VLDFR  563 (564)
Q Consensus       559 v~~~~  563 (564)
                      |||.+
T Consensus       317 v~D~~  321 (346)
T d1jmxb_         317 VFNPD  321 (346)
T ss_dssp             EEETT
T ss_pred             EEECc
Confidence            99975

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.85  E-value=6.5e-20  Score=177.82  Aligned_cols=272  Identities=10%  Similarity=0.061  Sum_probs=182.0

Q ss_pred             CccceEEEEECCCCCEE-EEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEE
Q 008467          215 HTSEVCACAWSPAGSLL-ASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG  293 (564)
Q Consensus       215 h~~~V~~~~~sp~~~~l-asgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg  293 (564)
                      +...+.+++|+|||++| ++++.|+.|++||+.+++.....          ..  .........+..++|+|++++++++
T Consensus        32 ~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~----------~~--~~~~~~~~~~~~v~~s~dg~~l~~~   99 (337)
T d1pbyb_          32 AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRI----------DL--STPEERVKSLFGAALSPDGKTLAIY   99 (337)
T ss_dssp             CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEE----------EC--CBTTEEEECTTCEEECTTSSEEEEE
T ss_pred             CCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEE----------ec--CCCcccccceeeEEEcCCCcEEEEe
Confidence            34567889999999977 56778999999999876532110          00  0001111234568999999999888


Q ss_pred             eC------------CCeEEEEECCCce-eEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccC
Q 008467          294 SY------------DGQARIWSTNGDL-KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP  360 (564)
Q Consensus       294 ~~------------dg~i~vw~~~~~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~  360 (564)
                      ..            ++.+.+|+..... ...+. +...+.++.|+|+|+++++++.  .+.+||..+++....+..+...
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~  176 (337)
T d1pbyb_         100 ESPVRLELTHFEVQPTRVALYDAETLSRRKAFE-APRQITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWE  176 (337)
T ss_dssp             EEEEEECSSCEEECCCEEEEEETTTTEEEEEEE-CCSSCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEEECSTTTT
T ss_pred             ecCCcceeeeccccccceeeccccCCeEEEecc-ccCCceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEEeecCCcc
Confidence            64            5678888876543 33343 4556788999999999998865  4778999998877665543321


Q ss_pred             eEEEEcCCCceE-EEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeee-ecc
Q 008467          361 TLDVDWRNNVSF-ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH-DLR  438 (564)
Q Consensus       361 ~~~~~~~~~~~~-~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~-~~~  438 (564)
                      .......+...+ .....                   .+...+.......+...+..++.++.+.+|+..++.... .+.
T Consensus       177 ~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (337)
T d1pbyb_         177 AETYAQPDVLAVWNQHES-------------------SGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR  237 (337)
T ss_dssp             TTTBCCCBCCCCCCCCTT-------------------TTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEE
T ss_pred             ccceecCCcceeeccccc-------------------cceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEec
Confidence            100000000000 00000                   011111122223334444455567789999998876543 345


Q ss_pred             cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 008467          439 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHI  518 (564)
Q Consensus       439 ~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~i  518 (564)
                      .+...+..+.++|++.         +++++  ++.|++||+.+++.+..+. +...+.+++|||||++|++++.|+.|.|
T Consensus       238 ~~~~~~~~~~~~~~~~---------~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v  305 (337)
T d1pbyb_         238 IMDVFYFSTAVNPAKT---------RAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAA  305 (337)
T ss_dssp             ECSSCEEEEEECTTSS---------EEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEE
T ss_pred             CCCcceEEEEecccce---------EEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence            5667778888888764         44444  5899999999999998886 5567899999999999999999999999


Q ss_pred             EeCCCCeEEEEEec
Q 008467          519 WSLKEGKIVKTYTG  532 (564)
Q Consensus       519 w~~~~~~~~~~~~~  532 (564)
                      ||+.+++.++++..
T Consensus       306 ~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         306 YDAETLEKKGQVDL  319 (337)
T ss_dssp             EETTTCCEEEEEEC
T ss_pred             EECCCCcEEEEEEC
Confidence            99999999988764

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.84  E-value=9.4e-18  Score=165.44  Aligned_cols=309  Identities=10%  Similarity=-0.020  Sum_probs=206.1

Q ss_pred             cCCccceEEEEECCCCCEEEEE-----ECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC
Q 008467          213 EGHTSEVCACAWSPAGSLLASG-----SGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG  287 (564)
Q Consensus       213 ~~h~~~V~~~~~sp~~~~lasg-----s~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g  287 (564)
                      ..|..++..++++|+|+.++..     +.++.+.+||..+++..             .....      .....++|+|||
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~-------------~~~~~------~~~~~~a~SpDG   77 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSIL-------------GHVNG------GFLPNPVAAHSG   77 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEE-------------EEEeC------CCCccEEEcCCC
Confidence            3577889999999999987654     23457888987766421             11111      112368999999


Q ss_pred             CEEEEEeC----------CCeEEEEECCC-ceeEeecCCCCCE-------EEEEeCCCCCEEEEee--CCCcEEEEECCC
Q 008467          288 TLLATGSY----------DGQARIWSTNG-DLKCTLSKHKGPI-------FSLKWNKKGDYLLTGS--CDKTAIVWDVKT  347 (564)
Q Consensus       288 ~~l~sg~~----------dg~i~vw~~~~-~~~~~~~~h~~~V-------~~l~~~~~~~~l~s~s--~D~~v~iwd~~~  347 (564)
                      ++|++++.          ++.|++||... +....+..+....       ..+.|+++++.++...  .++.+.+|+..+
T Consensus        78 ~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~  157 (373)
T d2madh_          78 SEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGG  157 (373)
T ss_pred             CEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccC
Confidence            99998754          57899999764 4455555444433       4477888888765554  456889999887


Q ss_pred             cceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCC------CcceEEEEECCCCCEEEEEeCCC
Q 008467          348 EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGH------QGEVNCVKWDPTGSLLASCSDDV  421 (564)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h------~~~i~~v~~~~~~~~las~s~dg  421 (564)
                      .+........  ....+.......|++.+.|+.+.+|+............+      ......+.+++++.+ +..+.++
T Consensus       158 ~~~~~~~~~~--~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  234 (373)
T d2madh_         158 SSDDQLLSSP--TCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRI-VWPVYSG  234 (373)
T ss_pred             CeEEEEeccc--eeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceE-EEecCCc
Confidence            7655443321  122333445567888999999999999887766554332      223445666766654 5667889


Q ss_pred             cEEEEeCCCCeee--eecccccccEE----------EEEEccCCCCCC-CCCCcEEEEEEeCCCeEEEEeCCCCeEEEEE
Q 008467          422 TAKIWNMKQDKYV--HDLREHSKEIY----------TIRWSPTGSGTN-NPNQQLILASASFDSTVKLWDVELGKLLYSL  488 (564)
Q Consensus       422 ~i~iwd~~~~~~~--~~~~~~~~~i~----------~i~~~p~~~~~~-~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  488 (564)
                      .+.+|+.......  .....+.....          .+.++|++.... .......+++...++.|.+||..+++.+..+
T Consensus       235 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~  314 (373)
T d2madh_         235 KILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI  314 (373)
T ss_pred             eEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEe
Confidence            9999998776532  22222222222          334444443110 0111224566778889999999999998877


Q ss_pred             eCCCCCEEEEEEcCCCCE--EEEEeCCCcEEEEeCCCCeEEEEEecC-CCEEEEEEccC
Q 008467          489 NGHREPVYSLAFSPTGEY--LASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKE  544 (564)
Q Consensus       489 ~~h~~~i~~~~~spdg~~--lasgs~dg~i~iw~~~~~~~~~~~~~~-~~i~~~~w~~~  544 (564)
                      . +...+..++|||||+.  +++++.|+.|++||+.+|+.++++... .....|+...+
T Consensus       315 ~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         315 S-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             c-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence            5 5567899999999984  578899999999999999999999754 34556665443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.81  E-value=9.9e-17  Score=158.00  Aligned_cols=274  Identities=9%  Similarity=0.000  Sum_probs=185.6

Q ss_pred             CCCCeEEEEECCCCCEEEEE-----eCCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEee----------CC
Q 008467          274 KSKDVTTLDWNGEGTLLATG-----SYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGS----------CD  337 (564)
Q Consensus       274 ~~~~V~~l~~s~~g~~l~sg-----~~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s----------~D  337 (564)
                      ...++.+++++|||+.++..     +..+.+.+||.. ++....+..+..+  .+.|+|+|++|++++          .+
T Consensus        19 ~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~   96 (373)
T d2madh_          19 ADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRT   96 (373)
T ss_pred             CCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccc
Confidence            34678889999999998764     234578889854 6666677666554  689999999998875          45


Q ss_pred             CcEEEEECCCcceeEEEeecccCeEEEEcCCCce---------E-EEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEE
Q 008467          338 KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS---------F-ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKW  407 (564)
Q Consensus       338 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~  407 (564)
                      +.|.+||+.+++.+..+..+..............         + .....++.+.+|+....+..    .+.....++.+
T Consensus        97 ~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  172 (373)
T d2madh_          97 DYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDD----QLLSSPTCYHI  172 (373)
T ss_pred             eEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEE----EEeccceeEEE
Confidence            7899999999998887766655444333322211         1 11122334444444433322    23344668899


Q ss_pred             CCCCCE-EEEEeCCCcEEEEeCCCCeeeeeccccc------ccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC
Q 008467          408 DPTGSL-LASCSDDVTAKIWNMKQDKYVHDLREHS------KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE  480 (564)
Q Consensus       408 ~~~~~~-las~s~dg~i~iwd~~~~~~~~~~~~~~------~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~  480 (564)
                      +|+++. +++.+.|+++.+|+............+.      .....+.+.+.+          .++..+.++.+.+|+..
T Consensus       173 s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~v~~~~~~  242 (373)
T d2madh_         173 HPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSG----------RIVWPVYSGKILQADIS  242 (373)
T ss_pred             ecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCc----------eEEEecCCceEEEEEcC
Confidence            999875 4688899999999998877665443221      112233333332          35566788999999988


Q ss_pred             CCeEEE--EEeCCC----------CCEEEEEEcCCCCEEE----------EEeCCCcEEEEeCCCCeEEEEEecCCCEEE
Q 008467          481 LGKLLY--SLNGHR----------EPVYSLAFSPTGEYLA----------SGSLDKSMHIWSLKEGKIVKTYTGNGGIFE  538 (564)
Q Consensus       481 ~~~~~~--~~~~h~----------~~i~~~~~spdg~~la----------sgs~dg~i~iw~~~~~~~~~~~~~~~~i~~  538 (564)
                      .+....  ....+.          .....++++|++..++          +...++.|.+||..+++.+..+.....+..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~  322 (373)
T d2madh_         243 AAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDA  322 (373)
T ss_pred             CCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCeeE
Confidence            765432  222111          2234567777776554          445567899999999999998888788999


Q ss_pred             EEEccCCCE--EEEEEcCCcEEEEEee
Q 008467          539 VCWNKEGDK--IAACFANHTVCVLDFR  563 (564)
Q Consensus       539 ~~w~~~g~~--la~~~~~~~v~v~~~~  563 (564)
                      ++|+|||+.  ++++..++.|.|||.+
T Consensus       323 ~a~spDG~~~l~vt~~~d~~v~v~D~~  349 (373)
T d2madh_         323 ISVAQDGGPDLYALSAGTEVLHIYDAG  349 (373)
T ss_pred             EEECCCCCEEEEEEeCCCCeEEEEECC
Confidence            999999984  4678889999999975

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.80  E-value=1.1e-18  Score=170.84  Aligned_cols=286  Identities=11%  Similarity=0.052  Sum_probs=186.0

Q ss_pred             EEEEECCCCCEEEEEE-----CCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEe
Q 008467          220 CACAWSPAGSLLASGS-----GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS  294 (564)
Q Consensus       220 ~~~~~sp~~~~lasgs-----~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~  294 (564)
                      ...+.+||++.++...     .++.+.+||..+++..             .....      ..+..++|||||++|++++
T Consensus         5 ~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~-------------~~~~~------g~~~~~a~SpDg~~l~v~~   65 (355)
T d2bbkh_           5 ILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVI-------------GMIDG------GFLPNPVVADDGSFIAHAS   65 (355)
T ss_dssp             BCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEE-------------EEEEE------CSSCEEEECTTSSCEEEEE
T ss_pred             EeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEE-------------EEEEC------CCCCceEEcCCCCEEEEEe
Confidence            3346789999877643     4667999998776421             11111      1234689999999887653


Q ss_pred             ----------CCCeEEEEECCC-ceeEeecCCC-------CCEEEEEeCCCCCEEEEee--CCCcEEEEECCCcceeEEE
Q 008467          295 ----------YDGQARIWSTNG-DLKCTLSKHK-------GPIFSLKWNKKGDYLLTGS--CDKTAIVWDVKTEEWKQQF  354 (564)
Q Consensus       295 ----------~dg~i~vw~~~~-~~~~~~~~h~-------~~V~~l~~~~~~~~l~s~s--~D~~v~iwd~~~~~~~~~~  354 (564)
                                .|+.|++||... .....+..+.       .....+.|+|++++++.++  .+..+.+|+..+++....+
T Consensus        66 ~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~  145 (355)
T d2bbkh_          66 TVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRML  145 (355)
T ss_dssp             EEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred             CCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEE
Confidence                      478999999764 4444443222       2234578999999887664  5678999999999887766


Q ss_pred             eecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEe------cCCCcceEEEEECCCCCEEEEEeCCCcEEEEeC
Q 008467          355 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF------AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNM  428 (564)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~------~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~  428 (564)
                      .......  ........++..+.|+....+.......+..+      ..+...+....+.+++..++.++.++.+.+|++
T Consensus       146 ~~~~~~~--~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  223 (355)
T d2bbkh_         146 DVPDCYH--IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDL  223 (355)
T ss_dssp             ECCSEEE--EEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEEC
T ss_pred             ecCCcce--EeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEec
Confidence            5433221  12223334445556665555544333222221      123445666778888889999999999999999


Q ss_pred             CCCeeee--eccccc----------ccEEEEEEccCCCCCCCCCCcEEEEEEeC---------CCeEEEEeCCCCeEEEE
Q 008467          429 KQDKYVH--DLREHS----------KEIYTIRWSPTGSGTNNPNQQLILASASF---------DSTVKLWDVELGKLLYS  487 (564)
Q Consensus       429 ~~~~~~~--~~~~~~----------~~i~~i~~~p~~~~~~~~~~~~~l~s~s~---------dg~i~iwd~~~~~~~~~  487 (564)
                      ..+....  ....+.          .....+.++|++.        .++++...         ...|.+||..+++.+..
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~--------~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~  295 (355)
T d2bbkh_         224 SSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALD--------RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAK  295 (355)
T ss_dssp             TTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTT--------EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEE
T ss_pred             CCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCC--------eEEEEeccCCceeecCCCCeEEEEeCCCCcEEEE
Confidence            8765321  111111          1123355666654        22222221         24799999999998887


Q ss_pred             EeCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEeCCCCeEEEEEecCCC
Q 008467          488 LNGHREPVYSLAFSPTGE--YLASGSLDKSMHIWSLKEGKIVKTYTGNGG  535 (564)
Q Consensus       488 ~~~h~~~i~~~~~spdg~--~lasgs~dg~i~iw~~~~~~~~~~~~~~~~  535 (564)
                      +.. ...+.+++|||||+  ++++++.|+.|.+||+++|++++++...+.
T Consensus       296 ~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~  344 (355)
T d2bbkh_         296 FEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGH  344 (355)
T ss_dssp             EEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCS
T ss_pred             ecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCC
Confidence            763 34578999999997  456778899999999999999999875443

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=1e-16  Score=154.88  Aligned_cols=289  Identities=11%  Similarity=0.174  Sum_probs=181.7

Q ss_pred             EEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEe-CCCeEEEEECCCc-
Q 008467          230 LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS-YDGQARIWSTNGD-  307 (564)
Q Consensus       230 ~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~-~dg~i~vw~~~~~-  307 (564)
                      .+++++.|++|++|++.....        +.  .++.     ..+...|..|+|||||++|++++ .|+.|++|+.... 
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~--------l~--~~~~-----~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~   70 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGA--------LT--LTQV-----VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD   70 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSC--------EE--EEEE-----EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             EEEECCCCCcEEEEEEcCCCC--------eE--EEEE-----EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCC
Confidence            457888999999999865321        11  1111     12346689999999999986555 5899999986532 


Q ss_pred             eeE---eecCCCCCEEEEEeCCCCCEEEEeeC-CCcEEEEECCCcceeEEEe--ecccCeEEEEcCC--CceEEEEeCCC
Q 008467          308 LKC---TLSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQQFE--FHSGPTLDVDWRN--NVSFATSSTDN  379 (564)
Q Consensus       308 ~~~---~~~~h~~~V~~l~~~~~~~~l~s~s~-D~~v~iwd~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~d~  379 (564)
                      ...   ....+...+..++|+|+|++|++++. ++++.+|+...........  .+...+..+.+..  ...+.....+.
T Consensus        71 ~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~  150 (333)
T d1ri6a_          71 GALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQD  150 (333)
T ss_dssp             CCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGT
T ss_pred             CcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccc
Confidence            111   12234455678999999999988875 6789999877655443332  2333344444433  33455556677


Q ss_pred             eEEEEEcCCCceeeE------ecCCCcceEEEEECCCCCEEEEEe-CCCcEEEEeCCCCee----eeecc------cccc
Q 008467          380 MIYVCKIGENRPIKT------FAGHQGEVNCVKWDPTGSLLASCS-DDVTAKIWNMKQDKY----VHDLR------EHSK  442 (564)
Q Consensus       380 ~i~~~~~~~~~~~~~------~~~h~~~i~~v~~~~~~~~las~s-~dg~i~iwd~~~~~~----~~~~~------~~~~  442 (564)
                      .+.+|+.........      ...+......++|++++..++... ..+...+|+......    ...+.      ....
T Consensus       151 ~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (333)
T d1ri6a_         151 RICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTR  230 (333)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCC
T ss_pred             eeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccc
Confidence            888988876543221      112334567899999998876554 566788887643321    11111      1223


Q ss_pred             cEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEE---EeCCCCCEEEEEEcCCCCEEEEEe-CCCcEEE
Q 008467          443 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYS---LNGHREPVYSLAFSPTGEYLASGS-LDKSMHI  518 (564)
Q Consensus       443 ~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~---~~~h~~~i~~~~~spdg~~lasgs-~dg~i~i  518 (564)
                      ....+++++++.        .+++++..++.+.+|++........   .......+.+++|||||++|++++ .++.|.+
T Consensus       231 ~~~~~~~s~d~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v  302 (333)
T d1ri6a_         231 WAADIHITPDGR--------HLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISV  302 (333)
T ss_dssp             CEEEEEECTTSS--------EEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEE
T ss_pred             cceeEEEecccC--------ceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEE
Confidence            455677777664        4677778889999998875432222   223345568899999999987765 5689999


Q ss_pred             E--eCCCCeEE--EEEecCCCEEEEEE
Q 008467          519 W--SLKEGKIV--KTYTGNGGIFEVCW  541 (564)
Q Consensus       519 w--~~~~~~~~--~~~~~~~~i~~~~w  541 (564)
                      |  |.++|++.  ..+........+++
T Consensus       303 ~~id~~tG~l~~~~~~~~g~~p~~v~~  329 (333)
T d1ri6a_         303 YEIVGEQGLLHEKGRYAVGQGPMWVVV  329 (333)
T ss_dssp             EEEETTTTEEEEEEEEECSSSCCEEEE
T ss_pred             EEEECCCCcEEEEEeccCCCCCcEEEE
Confidence            9  55677653  33443333334433

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=1.4e-15  Score=146.74  Aligned_cols=267  Identities=12%  Similarity=0.187  Sum_probs=177.7

Q ss_pred             EEEEEeCCCeEEEEECCC--cee-EeecCCCCCEEEEEeCCCCCEEEEee-CCCcEEEEECCCcceeEEEee---cccCe
Q 008467          289 LLATGSYDGQARIWSTNG--DLK-CTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDVKTEEWKQQFEF---HSGPT  361 (564)
Q Consensus       289 ~l~sg~~dg~i~vw~~~~--~~~-~~~~~h~~~V~~l~~~~~~~~l~s~s-~D~~v~iwd~~~~~~~~~~~~---~~~~~  361 (564)
                      .+++++.|+.|++|+.+.  .+. .....|.+.|.+|+|+|+|++|++++ .|+.|++|++........+..   ....+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p   85 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   85 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence            457788999999999753  222 22346888999999999999986554 589999999876654333222   22234


Q ss_pred             EEEEcCCCc--eEEEEeCCCeEEEEEcCCCceee--EecCCCcceEEEEECCCCCEEEEEeC-CCcEEEEeCCCCeeeee
Q 008467          362 LDVDWRNNV--SFATSSTDNMIYVCKIGENRPIK--TFAGHQGEVNCVKWDPTGSLLASCSD-DVTAKIWNMKQDKYVHD  436 (564)
Q Consensus       362 ~~~~~~~~~--~~~~~~~d~~i~~~~~~~~~~~~--~~~~h~~~i~~v~~~~~~~~las~s~-dg~i~iwd~~~~~~~~~  436 (564)
                      ..+.|.++.  .++++..++.+.+|+........  ....+...+.++.++|+++.+++++. +..|.+|+.........
T Consensus        86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~  165 (333)
T d1ri6a_          86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA  165 (333)
T ss_dssp             SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred             eEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCccee
Confidence            456665543  34444567888888877665433  33456667889999999998887775 55789999765432211


Q ss_pred             ------cccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC----eEEEEEe------CCCCCEEEEEE
Q 008467          437 ------LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG----KLLYSLN------GHREPVYSLAF  500 (564)
Q Consensus       437 ------~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~------~h~~~i~~~~~  500 (564)
                            ..........+.|++.+.        ....+....+...+|+....    .....+.      ........+++
T Consensus       166 ~~~~~~~~~~g~~p~~i~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (333)
T d1ri6a_         166 QDPAEVTTVEGAGPRHMVFHPNEQ--------YAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHI  237 (333)
T ss_dssp             EEEEEEECSTTCCEEEEEECTTSS--------EEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEE
T ss_pred             eeceeeeeecCCCccEEEEeccce--------eEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEE
Confidence                  112334457788888764        34556667778888886532    2222222      12245678899


Q ss_pred             cCCCCEEEEE-eCCCcEEEEeCCCCeEE----EEEecCCCEEEEEEccCCCEEEEEEc-CCcEEEEEee
Q 008467          501 SPTGEYLASG-SLDKSMHIWSLKEGKIV----KTYTGNGGIFEVCWNKEGDKIAACFA-NHTVCVLDFR  563 (564)
Q Consensus       501 spdg~~lasg-s~dg~i~iw~~~~~~~~----~~~~~~~~i~~~~w~~~g~~la~~~~-~~~v~v~~~~  563 (564)
                      +||+++++.+ ..++.+.+|++......    ........+.+++|+|||++|+++.. ++.|.||++.
T Consensus       238 s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id  306 (333)
T d1ri6a_         238 TPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV  306 (333)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             ecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEE
Confidence            9999977654 56788999988654322    22223345778999999999877754 5789999764

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=5.7e-16  Score=151.17  Aligned_cols=267  Identities=11%  Similarity=0.038  Sum_probs=177.5

Q ss_pred             EEECCCCCEEEEEe-----CCCeEEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEe----------eCCCcEEEEE
Q 008467          281 LDWNGEGTLLATGS-----YDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTG----------SCDKTAIVWD  344 (564)
Q Consensus       281 l~~s~~g~~l~sg~-----~dg~i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~----------s~D~~v~iwd  344 (564)
                      .+.+|||+.+++..     .++.+.+||.. +++..++..+..+  .++|+|+|++|++.          +.|+.|++||
T Consensus         7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D   84 (355)
T d2bbkh_           7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFD   84 (355)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEE
Confidence            35689999887764     35679999975 4555666655544  68999999988764          3478999999


Q ss_pred             CCCcceeEEEeecccCe-------EEEEcCCCc--eEE-EEeCCCeEEEEEcCCCceeeEecCCCc-------ceEEEEE
Q 008467          345 VKTEEWKQQFEFHSGPT-------LDVDWRNNV--SFA-TSSTDNMIYVCKIGENRPIKTFAGHQG-------EVNCVKW  407 (564)
Q Consensus       345 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~--~~~-~~~~d~~i~~~~~~~~~~~~~~~~h~~-------~i~~v~~  407 (564)
                      +.+++....+..+....       ..+.|..+.  .++ ..+.+..+.+|+....+.+..+..+..       ....+.+
T Consensus        85 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (355)
T d2bbkh_          85 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMH  164 (355)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEE
T ss_pred             CCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEE
Confidence            99999887766543321       223444332  222 234567889999988888777665432       2234556


Q ss_pred             CCCCCEEEEE-eCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE
Q 008467          408 DPTGSLLASC-SDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY  486 (564)
Q Consensus       408 ~~~~~~las~-s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~  486 (564)
                      +++++.++.. ..++.+.+++......     .+...+....+.+.+.         .++.++.++.+++|++..++...
T Consensus       165 ~~dg~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~  230 (355)
T d2bbkh_         165 CRDGSLAKVAFGTEGTPEITHTEVFHP-----EDEFLINHPAYSQKAG---------RLVWPTYTGKIHQIDLSSGDAKF  230 (355)
T ss_dssp             ETTSCEEEEECCSSSCCEEEECCCCSC-----TTSCBCSCCEEETTTT---------EEEEEBTTSEEEEEECTTSSCEE
T ss_pred             cCCCCEEEEEecCCCeEEEEecccccc-----eecceeeeccccCCCC---------eEEEecCCCeEEEEecCCCcEEE
Confidence            6666655433 2344455554433221     1222233344544432         56778899999999998775422


Q ss_pred             --EEeCCC----------CCEEEEEEcCCCCEEEEEeCC----------CcEEEEeCCCCeEEEEEecCCCEEEEEEccC
Q 008467          487 --SLNGHR----------EPVYSLAFSPTGEYLASGSLD----------KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKE  544 (564)
Q Consensus       487 --~~~~h~----------~~i~~~~~spdg~~lasgs~d----------g~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~  544 (564)
                        ....+.          .....++++|++..++..+.+          ..|.+||..+++.+..+.....+.+++|+||
T Consensus       231 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spD  310 (355)
T d2bbkh_         231 LPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQD  310 (355)
T ss_dssp             CCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCS
T ss_pred             EeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCC
Confidence              222221          123458899999988766543          3699999999999988887777889999999


Q ss_pred             CC--EEEEEEcCCcEEEEEee
Q 008467          545 GD--KIAACFANHTVCVLDFR  563 (564)
Q Consensus       545 g~--~la~~~~~~~v~v~~~~  563 (564)
                      |+  .++++..++.|.|||.+
T Consensus       311 G~~~l~v~~~~d~~i~v~D~~  331 (355)
T d2bbkh_         311 EKPLLYALSTGDKTLYIHDAE  331 (355)
T ss_dssp             SSCEEEEEETTTTEEEEEETT
T ss_pred             CCeEEEEEECCCCEEEEEECC
Confidence            98  34566678999999974

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.65  E-value=4.3e-16  Score=153.36  Aligned_cols=249  Identities=7%  Similarity=-0.044  Sum_probs=163.2

Q ss_pred             EEEECCCCCEEEEEe----------CCCeEEEEECC-CceeEeecCCCC-------CEEEEEeCCCCCEEEEee-CCCcE
Q 008467          280 TLDWNGEGTLLATGS----------YDGQARIWSTN-GDLKCTLSKHKG-------PIFSLKWNKKGDYLLTGS-CDKTA  340 (564)
Q Consensus       280 ~l~~s~~g~~l~sg~----------~dg~i~vw~~~-~~~~~~~~~h~~-------~V~~l~~~~~~~~l~s~s-~D~~v  340 (564)
                      .++|+|||+.|++++          .|+.|++||.. ++....+..+..       ....+.|+|+|++|+++. .++.+
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v  148 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeE
Confidence            478999999888764          36789999975 344444433221       224589999999998776 57999


Q ss_pred             EEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceee------EecCCCcceEEEEECCCCCEE
Q 008467          341 IVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIK------TFAGHQGEVNCVKWDPTGSLL  414 (564)
Q Consensus       341 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~------~~~~h~~~i~~v~~~~~~~~l  414 (564)
                      .+||+.+++....+..+....  +.......++..+.|+.+.+++........      .+..+...+..+.+.+++..+
T Consensus       149 ~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  226 (368)
T d1mdah_         149 AGLSVPGASDDQLTKSASCFH--IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLV  226 (368)
T ss_dssp             EEEEETTTEEEEEEECSSCCC--CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEE
T ss_pred             EEEECCCCcEeEEeeccCcce--EccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEE
Confidence            999999999888776554332  122344567777888888888876543221      223445556677888888766


Q ss_pred             EEEeCCCcEEEEeCCCCeeeee--ccccc----------ccEEEEEEccCCCCCCCCCCcEEEEEEeCC--------CeE
Q 008467          415 ASCSDDVTAKIWNMKQDKYVHD--LREHS----------KEIYTIRWSPTGSGTNNPNQQLILASASFD--------STV  474 (564)
Q Consensus       415 as~s~dg~i~iwd~~~~~~~~~--~~~~~----------~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d--------g~i  474 (564)
                      .+.  .+.+.+++.........  ...+.          .....++++|++.        .+++....+        ..|
T Consensus       227 ~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~--------~~~v~~~~~~~~~~~~~~~v  296 (368)
T d1mdah_         227 WAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTD--------GIMILTVEHSRSCLAAAENT  296 (368)
T ss_dssp             ECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTT--------EEEEEEEECSSCTTSCEEEE
T ss_pred             Eec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCC--------EEEEEecCCCceeecCCceE
Confidence            544  44566666554433211  11111          1112345555543        222222111        359


Q ss_pred             EEEeCCCCeEEEEEeCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEeCCCCeEEEEEecCCCEEEEEE
Q 008467          475 KLWDVELGKLLYSLNGHREPVYSLAFSPTGE--YLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCW  541 (564)
Q Consensus       475 ~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~--~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~~~~w  541 (564)
                      .+||..+++.+..+.. ...+.+++|||||+  .+++++.|+.|++||..+|+.+++++.......|+.
T Consensus       297 ~v~D~~t~~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~P~~l~~  364 (368)
T d1mdah_         297 SSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSV  364 (368)
T ss_dssp             EEEESSSCCEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEEC
T ss_pred             EEEECCCCcEeEEecC-CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCCCCEEEE
Confidence            9999999998877763 35688999999997  346777899999999999999998875544444443

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.58  E-value=2.2e-13  Score=138.39  Aligned_cols=292  Identities=14%  Similarity=0.156  Sum_probs=161.6

Q ss_pred             EccCCccceEEEEECCCCCEEEEEEC---------CCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEE
Q 008467          211 ILEGHTSEVCACAWSPAGSLLASGSG---------DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTL  281 (564)
Q Consensus       211 ~l~~h~~~V~~~~~sp~~~~lasgs~---------D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l  281 (564)
                      .+..|...|.+.+|||||++||.++.         ++.+.|||+.++...                  ....+...+..+
T Consensus        56 ~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~------------------~l~~~~~~~~~~  117 (470)
T d2bgra1          56 TFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI------------------TEERIPNNTQWV  117 (470)
T ss_dssp             TTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC------------------CSSCCCTTEEEE
T ss_pred             hhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCccc------------------ccccCCcccccc
Confidence            34567788999999999999998753         567889999876421                  112234668899


Q ss_pred             EECCCCCEEEEEeCCCeEEEEECCCceeEee-c-C-----------------CCCCEEEEEeCCCCCEEEEeeCCCc-EE
Q 008467          282 DWNGEGTLLATGSYDGQARIWSTNGDLKCTL-S-K-----------------HKGPIFSLKWNKKGDYLLTGSCDKT-AI  341 (564)
Q Consensus       282 ~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~-~-~-----------------h~~~V~~l~~~~~~~~l~s~s~D~~-v~  341 (564)
                      .|||||+.+|.. .++.+.+|+..+.....+ . +                 +.+...++.|+|+|++|+....|.+ +.
T Consensus       118 ~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~  196 (470)
T d2bgra1         118 TWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVP  196 (470)
T ss_dssp             EECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCC
T ss_pred             ccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCc
Confidence            999999999985 567899998765432221 1 1                 1223456789999999999877654 44


Q ss_pred             EEECC---Cc--ce--eEEE-----------------eeccc----------------------CeEEEEcCCCceEEE-
Q 008467          342 VWDVK---TE--EW--KQQF-----------------EFHSG----------------------PTLDVDWRNNVSFAT-  374 (564)
Q Consensus       342 iwd~~---~~--~~--~~~~-----------------~~~~~----------------------~~~~~~~~~~~~~~~-  374 (564)
                      .|.+.   ..  ..  ...+                 .....                      .+..+.|..+..+.. 
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~  276 (470)
T d2bgra1         197 LIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQ  276 (470)
T ss_dssp             EEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEE
T ss_pred             eEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEE
Confidence            44321   00  00  0000                 00000                      011233332222211 


Q ss_pred             -EeC-CC--eEEEE--EcCCCceeeEe-------------cCCCcceEEEEECCCC--CEEEEEeCCCcEEEEe--CCCC
Q 008467          375 -SST-DN--MIYVC--KIGENRPIKTF-------------AGHQGEVNCVKWDPTG--SLLASCSDDVTAKIWN--MKQD  431 (564)
Q Consensus       375 -~~~-d~--~i~~~--~~~~~~~~~~~-------------~~h~~~i~~v~~~~~~--~~las~s~dg~i~iwd--~~~~  431 (564)
                       ... .+  .+.++  +..++......             ..|...  ...|.+++  .+++....||..+||.  ...+
T Consensus       277 ~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~  354 (470)
T d2bgra1         277 WLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPS--EPHFTLDGNSFYKIISNEEGYRHICYFQIDKK  354 (470)
T ss_dssp             EEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCC--CCEECTTSSEEEEEEECTTSCEEEEEEETTCS
T ss_pred             EeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccCC--CceeeecCCCcEEEEeccCcCceeEEEeccCC
Confidence             111 11  12222  22222221111             011111  22344443  3456677788776664  4443


Q ss_pred             eeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCC----eEEEE--eCCCCeEEEEE----eCCCCCEEEEEEc
Q 008467          432 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS----TVKLW--DVELGKLLYSL----NGHREPVYSLAFS  501 (564)
Q Consensus       432 ~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg----~i~iw--d~~~~~~~~~~----~~h~~~i~~~~~s  501 (564)
                      . ...+..+...|..+ +++++.        .+.++++.++    .-.||  ++..+.....+    .+|...+.+++||
T Consensus       355 ~-~~~lt~g~~~v~~~-~~~d~~--------~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fS  424 (470)
T d2bgra1         355 D-CTFITKGTWEVIGI-EALTSD--------YLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFS  424 (470)
T ss_dssp             C-CEESCCSSSCEEEE-EEECSS--------EEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEEC
T ss_pred             c-eeeeccCCeeEEEE-EEECCC--------EEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCCEEEEEEC
Confidence            3 33444445556665 334332        2334443332    11233  44433333333    3577789999999


Q ss_pred             CCCCEEE---EEeCCCcEEEEeCCCCeEEEEEecC
Q 008467          502 PTGEYLA---SGSLDKSMHIWSLKEGKIVKTYTGN  533 (564)
Q Consensus       502 pdg~~la---sgs~dg~i~iw~~~~~~~~~~~~~~  533 (564)
                      |||+|++   +|...-.+.+|+..+|+.++.++.+
T Consensus       425 pdgky~~~~~s~~~~P~~~l~~~~~g~~v~~le~n  459 (470)
T d2bgra1         425 KEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDN  459 (470)
T ss_dssp             TTSSEEEEEECSBSSCEEEEEETTTTEEEEEEECC
T ss_pred             CCCCEEEEEecCCCCCeEEEEECCCCCEEEEEecc
Confidence            9999987   3334456999999999999988654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.44  E-value=9.5e-12  Score=125.99  Aligned_cols=118  Identities=13%  Similarity=0.130  Sum_probs=91.4

Q ss_pred             EEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeC-----
Q 008467          221 ACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY-----  295 (564)
Q Consensus       221 ~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~-----  295 (564)
                      .+.|.++++++..  .|+.+.+|++.+++..         . .+.  ......+...|.++.|||||++|+.++.     
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~---------~-~~~--~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~   86 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSS---------V-FLE--NSTFDEFGHSINDYSISPDGQFILLEYNYVKQW   86 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEE---------E-EEC--TTTTTTSSSCCCEEEECTTSSEEEEEEEEEECS
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEE---------E-EEc--hhhhhhccCccceeEECCCCCEEEEEECCccee
Confidence            4679999988764  5788999999876521         0 110  1112334467999999999999998853     


Q ss_pred             ----CCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEE
Q 008467          296 ----DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ  353 (564)
Q Consensus       296 ----dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~  353 (564)
                          ++.+.+|+..+.....+..|...+..+.|||+|++|+.. .++.+.+|+..++...+.
T Consensus        87 r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~  147 (470)
T d2bgra1          87 RHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRI  147 (470)
T ss_dssp             SSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEEC
T ss_pred             eeccCceEEEEECCCCcccccccCCccccccccccCcceeeEe-ecccceEEECCCCceeee
Confidence                578899999888777888999999999999999999885 578999999988875543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.41  E-value=5.2e-12  Score=123.54  Aligned_cols=267  Identities=7%  Similarity=-0.085  Sum_probs=163.8

Q ss_pred             EEECCCCCEE---EEEeCCCe--EEEEECC-CceeEeecCCCCCEEEEEeCCCCCEEEEee----------CCCcEEEEE
Q 008467          281 LDWNGEGTLL---ATGSYDGQ--ARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGS----------CDKTAIVWD  344 (564)
Q Consensus       281 l~~s~~g~~l---~sg~~dg~--i~vw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s----------~D~~v~iwd  344 (564)
                      ++..++++..   +.+..+|.  +.+||.. ++....+..+..+  .+.|+|+|++|++.+          .|++|.+||
T Consensus        25 ~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D  102 (368)
T d1mdah_          25 HGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFD  102 (368)
T ss_dssp             CCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEEC
T ss_pred             cccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEE
Confidence            3446677643   22345555  4555755 4455555555555  578999999888754          477899999


Q ss_pred             CCCcceeEEEeecccC-------eEEEEcCCC--ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEE
Q 008467          345 VKTEEWKQQFEFHSGP-------TLDVDWRNN--VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA  415 (564)
Q Consensus       345 ~~~~~~~~~~~~~~~~-------~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~la  415 (564)
                      ..+++....+..+...       ...+.|..+  ..+++...++.+.+|++...+.+..+..+.......   .....++
T Consensus       103 ~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~v  179 (368)
T d1mdah_         103 PVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHP---GAAATHY  179 (368)
T ss_dssp             TTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEE---EETTEEE
T ss_pred             CCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEcc---CCCceEE
Confidence            9999988877654321       123445443  334444578999999999998888776554332111   1223455


Q ss_pred             EEeCCCcEEEEeCCCCeeee------ecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEE-
Q 008467          416 SCSDDVTAKIWNMKQDKYVH------DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-  488 (564)
Q Consensus       416 s~s~dg~i~iwd~~~~~~~~------~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-  488 (564)
                      ..+.||++.+|+........      .+..+...+....+.+++.         .+.  ...+.+.+++...+...... 
T Consensus       180 ~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---------~~~--~~~~~v~~~~~~~~~~~~~~~  248 (368)
T d1mdah_         180 LGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGM---------LVW--AVASSILQGDIPAAGATMKAA  248 (368)
T ss_dssp             CCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTE---------EEE--CBSSCCEEEECCSSCCEEECC
T ss_pred             EEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcE---------EEE--ecCCCEEEEeecCCceEEEee
Confidence            56667776666654433211      1122333334455555542         232  33456666766654433211 


Q ss_pred             -eCCC----------CCEEEEEEcCCCCEEEEEeCC---------CcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCE-
Q 008467          489 -NGHR----------EPVYSLAFSPTGEYLASGSLD---------KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDK-  547 (564)
Q Consensus       489 -~~h~----------~~i~~~~~spdg~~lasgs~d---------g~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~-  547 (564)
                       ..+.          .....++++|++..++....+         ..|.+||..+++.+.++.....+..++|+|||+. 
T Consensus       249 ~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~  328 (368)
T d1mdah_         249 IDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASD  328 (368)
T ss_dssp             CCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCE
T ss_pred             cccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEE
Confidence             1110          112357899999877654322         3599999999999888776667889999999973 


Q ss_pred             -EEEEEcCCcEEEEEee
Q 008467          548 -IAACFANHTVCVLDFR  563 (564)
Q Consensus       548 -la~~~~~~~v~v~~~~  563 (564)
                       ++++..++.|.|||..
T Consensus       329 ly~s~~~~~~v~v~D~~  345 (368)
T d1mdah_         329 NYANSAGTEVLDIYDAA  345 (368)
T ss_dssp             EEEEETTTTEEEEEESS
T ss_pred             EEEEeCCCCeEEEEECC
Confidence             3555678899999964

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.32  E-value=1e-12  Score=128.64  Aligned_cols=274  Identities=11%  Similarity=0.061  Sum_probs=160.2

Q ss_pred             CCccceEEEEECCCCCEEEEE-ECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC--EE
Q 008467          214 GHTSEVCACAWSPAGSLLASG-SGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT--LL  290 (564)
Q Consensus       214 ~h~~~V~~~~~sp~~~~lasg-s~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~--~l  290 (564)
                      .|........++|||++|+.. ..++.|.++|+.+++...          .+      ..+....+..++|+|+|+  ++
T Consensus        69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~----------ii------~iP~g~gphgi~~spdg~t~YV  132 (441)
T d1qnia2          69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDK----------IT------HIPNVQAIHGLRLQKVPKTNYV  132 (441)
T ss_dssp             BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEE----------EE------ECTTCCCEEEEEECCSSBCCEE
T ss_pred             ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEee----------EE------ecCCCCCccceEEeccCCEEEE
Confidence            355556667788999988655 478899999998764211          00      112345688999999998  55


Q ss_pred             EEEeCCCe-----------------EEEEECCCc-eeEeecCCCCCEEEEEeCCCCCEEEEeeCCC-cEEEEECCCccee
Q 008467          291 ATGSYDGQ-----------------ARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK-TAIVWDVKTEEWK  351 (564)
Q Consensus       291 ~sg~~dg~-----------------i~vw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~-~v~iwd~~~~~~~  351 (564)
                      +.++.+..                 +..+|.... ....+.. .+....+.|+|+|+++++.+.+. .+..++..+....
T Consensus       133 ~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~  211 (441)
T d1qnia2         133 FCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDR  211 (441)
T ss_dssp             EEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSB
T ss_pred             EeccCCcccccCcccccccccccceEEeecCccceeeEEEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceE
Confidence            54444321                 234554432 2222222 23457789999999988777653 3433443333322


Q ss_pred             EEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEE-EEEeCCCcEEEEeCCC
Q 008467          352 QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL-ASCSDDVTAKIWNMKQ  430 (564)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l-as~s~dg~i~iwd~~~  430 (564)
                      ..+.....+ .......+..++..+.++.+.++.......+..+....+ ...+.++|||+++ +++..+++|.+||+.+
T Consensus       212 d~i~v~n~p-~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k  289 (441)
T d1qnia2         212 DWVVVFNVE-RIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDK  289 (441)
T ss_dssp             CEEEEEEHH-HHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred             EEEEeCCcc-ceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeeh
Confidence            211111000 000111222333444556666665555556666655444 4578999999976 5677899999999864


Q ss_pred             Ceee--------eecccc---cccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC----------CeEEEEE-
Q 008467          431 DKYV--------HDLREH---SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL----------GKLLYSL-  488 (564)
Q Consensus       431 ~~~~--------~~~~~~---~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~----------~~~~~~~-  488 (564)
                      ....        ..+.++   .-.....+|.+.|.         .+.|.+.|..|..|++..          ...+..+ 
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~---------~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~  360 (441)
T d1qnia2         290 LDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGN---------AYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLD  360 (441)
T ss_dssp             HHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSE---------EEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEE
T ss_pred             hhhHhhccCCcceEEEeecccccCcccceecCCce---------EEEcccccceEEEeccchhhhhhccCCCceeEeccc
Confidence            2210        011111   11123345666553         578888999999999741          1233344 


Q ss_pred             ----eCCCCCEEEEEEcCCCCEEEEE---eCCCc
Q 008467          489 ----NGHREPVYSLAFSPTGEYLASG---SLDKS  515 (564)
Q Consensus       489 ----~~h~~~i~~~~~spdg~~lasg---s~dg~  515 (564)
                          .+|...+.+.+|+|||+||+++   |.|+.
T Consensus       361 v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr~  394 (441)
T d1qnia2         361 VQYQPGHNHASLTESRDADGKWLVVLSKFSKDRF  394 (441)
T ss_dssp             CSSCEEEEEETTTTSTTCCCCEEEEEESCCGGGS
T ss_pred             cccCCCCCccccccccCCCCcEEEecCccccccC
Confidence                4666666677899999999999   55643

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.32  E-value=2e-10  Score=112.21  Aligned_cols=253  Identities=10%  Similarity=0.106  Sum_probs=154.8

Q ss_pred             EEEEeCCCeEEEEECC-CceeEeec------------------------------CCCCCEEEEEeCCCCCEEEEe-eCC
Q 008467          290 LATGSYDGQARIWSTN-GDLKCTLS------------------------------KHKGPIFSLKWNKKGDYLLTG-SCD  337 (564)
Q Consensus       290 l~sg~~dg~i~vw~~~-~~~~~~~~------------------------------~h~~~V~~l~~~~~~~~l~s~-s~D  337 (564)
                      ++||+.+|.|++|++. ++...++.                              .|..........|||++|+.. ..+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            6788889999999864 33333321                              122334455567899998554 578


Q ss_pred             CcEEEEECCCcceeEEEeec-ccCeEEEEcCC--CceEEEEeCCCeE------------------EEEEcCCCceeeEec
Q 008467          338 KTAIVWDVKTEEWKQQFEFH-SGPTLDVDWRN--NVSFATSSTDNMI------------------YVCKIGENRPIKTFA  396 (564)
Q Consensus       338 ~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~d~~i------------------~~~~~~~~~~~~~~~  396 (564)
                      ++|.++|+.+++..+.+... ......+.+..  +..++++..+..+                  ..++..+........
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~  173 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI  173 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence            89999999999988876643 34455566653  3335555444333                  234544444433333


Q ss_pred             CCCcceEEEEECCCCCEEEEEeCCC-----------------------------------------cEEEEeCCCCeeee
Q 008467          397 GHQGEVNCVKWDPTGSLLASCSDDV-----------------------------------------TAKIWNMKQDKYVH  435 (564)
Q Consensus       397 ~h~~~i~~v~~~~~~~~las~s~dg-----------------------------------------~i~iwd~~~~~~~~  435 (564)
                      .. +....++++|+|+++++.+.+.                                         .+.|++......+.
T Consensus       174 v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~  252 (441)
T d1qnia2         174 VD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTR  252 (441)
T ss_dssp             ES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEE
T ss_pred             cC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEE
Confidence            22 3456799999999887776442                                         23333333333333


Q ss_pred             ecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-----------EEEEEeCCCCCEEEEEEcCCC
Q 008467          436 DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-----------LLYSLNGHREPVYSLAFSPTG  504 (564)
Q Consensus       436 ~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-----------~~~~~~~h~~~i~~~~~spdg  504 (564)
                      .+..... ...+..+|+|        +++++++..+++|.+||+++..           ++..-....-.....+|+++|
T Consensus       253 ~IPvgks-PhGv~vSPDG--------kyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g  323 (441)
T d1qnia2         253 YIPVPKN-PHGLNTSPDG--------KYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRG  323 (441)
T ss_dssp             EECCBSS-CCCEEECTTS--------CEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSS
T ss_pred             EEeCCCC-ccCceECCCC--------CEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCc
Confidence            3333222 2445556655        4678889999999999986421           111111112234667899999


Q ss_pred             CEEEEEeCCCcEEEEeCCC----------CeEEEEEecCCC------EEEEEEccCCCEEEEEE
Q 008467          505 EYLASGSLDKSMHIWSLKE----------GKIVKTYTGNGG------IFEVCWNKEGDKIAACF  552 (564)
Q Consensus       505 ~~lasgs~dg~i~iw~~~~----------~~~~~~~~~~~~------i~~~~w~~~g~~la~~~  552 (564)
                      ..+.+...|..|..|++..          ..++..+..+-.      +.+.+++|||++|+++.
T Consensus       324 ~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~  387 (441)
T d1qnia2         324 NAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS  387 (441)
T ss_dssp             EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred             eEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence            9999999999999999742          123444432222      23456899999999993

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.17  E-value=4.9e-08  Score=89.80  Aligned_cols=233  Identities=12%  Similarity=0.152  Sum_probs=140.1

Q ss_pred             eEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCC---cEEEEECCCcceeEEEeecccCeEEEEcCCCc-eEE
Q 008467          298 QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK---TAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV-SFA  373 (564)
Q Consensus       298 ~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  373 (564)
                      .|.|.|.+|.....+..+...+.+-+|||||+.|+-.....   .+.+.+..++... .+..+........|..+. .++
T Consensus        20 ~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i~   98 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLA   98 (269)
T ss_dssp             EEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEE
T ss_pred             EEEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCeee
Confidence            56677888877777777788899999999999998665433   3566666655543 334444555566665443 232


Q ss_pred             E-EeCCCe--EEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEE-EeCCCcEE--EEeCCCCeeeeecccccccEEEE
Q 008467          374 T-SSTDNM--IYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLAS-CSDDVTAK--IWNMKQDKYVHDLREHSKEIYTI  447 (564)
Q Consensus       374 ~-~~~d~~--i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las-~s~dg~i~--iwd~~~~~~~~~~~~~~~~i~~i  447 (564)
                      . ....+.  +..+......... ...+........+++++..++. ...+|...  +.+...... ..+..+.......
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~~~~  176 (269)
T d2hqsa1          99 FALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDA  176 (269)
T ss_dssp             EEECTTSSCEEEEEETTTCCEEE-CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEE
T ss_pred             EeeecCCccceeeccccccccee-eeeccccccccccccccccceecccccCCceEeeeecccccc-eeeeccccccccc
Confidence            2 222222  2222222222222 2223333445667777776544 44455544  445554432 2334455667778


Q ss_pred             EEccCCCCCCCCCCcEEEEEEeCCCeEEEE--eCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEeCC
Q 008467          448 RWSPTGSGTNNPNQQLILASASFDSTVKLW--DVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL---DKSMHIWSLK  522 (564)
Q Consensus       448 ~~~p~~~~~~~~~~~~~l~s~s~dg~i~iw--d~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~---dg~i~iw~~~  522 (564)
                      .|+|++.        .++.+....+...+|  +...+..  .+..+........|||||++||-.+.   ...|+++++.
T Consensus       177 ~~spdg~--------~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~d  246 (269)
T d2hqsa1         177 DVSSDGK--------FMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD  246 (269)
T ss_dssp             EECTTSS--------EEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred             ccccccc--------eeEEEeecCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence            8999875        345555555555555  4444433  33344556778899999999875443   3478999998


Q ss_pred             CCeEEEEEecCCCEEEEEEcc
Q 008467          523 EGKIVKTYTGNGGIFEVCWNK  543 (564)
Q Consensus       523 ~~~~~~~~~~~~~i~~~~w~~  543 (564)
                      .+...+.....+.+...+|||
T Consensus       247 g~~~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         247 GRFKARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             SCCEEECCCSSSEEEEEEECC
T ss_pred             CCCEEEEeCCCCcEEeEEeCC
Confidence            777665555566688899998

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.16  E-value=4.1e-08  Score=91.15  Aligned_cols=230  Identities=14%  Similarity=0.226  Sum_probs=156.6

Q ss_pred             EEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeeccc------CeEEEEc--CCCceEE-EEeCCCeEEEEEcCCC
Q 008467          319 IFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG------PTLDVDW--RNNVSFA-TSSTDNMIYVCKIGEN  389 (564)
Q Consensus       319 V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~------~~~~~~~--~~~~~~~-~~~~d~~i~~~~~~~~  389 (564)
                      -..|+++++|+.+++-...+.|++||.. +.++..+.....      ....+.+  .....++ ..+.++.|..++.. +
T Consensus        25 P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-g  102 (279)
T d1q7fa_          25 PSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-G  102 (279)
T ss_dssp             EEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-S
T ss_pred             ccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-c
Confidence            4789999999988887778899999965 566655532211      1122222  2223333 33445566665543 3


Q ss_pred             ceeeEec-CCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeec--ccccccEEEEEEccCCCCCCCCCCcEEEE
Q 008467          390 RPIKTFA-GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL--REHSKEIYTIRWSPTGSGTNNPNQQLILA  466 (564)
Q Consensus       390 ~~~~~~~-~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~--~~~~~~i~~i~~~p~~~~~~~~~~~~~l~  466 (564)
                      .....+. ........+++.++|.++++....+.+.+++.. ++.+..+  ..+......+++.+++.         +++
T Consensus       103 ~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~---------i~v  172 (279)
T d1q7fa_         103 QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQE---------IFI  172 (279)
T ss_dssp             CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSE---------EEE
T ss_pred             cceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cceeecccccccccccceeeecccee---------EEe
Confidence            3444442 334567789999999998888888888888865 3444443  23455667778777653         667


Q ss_pred             EEeCCCeEEEEeCCCCeEEEEEe--CCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCeEEEEEecC---CCEEEEE
Q 008467          467 SASFDSTVKLWDVELGKLLYSLN--GHREPVYSLAFSPTGEYLASGSL-DKSMHIWSLKEGKIVKTYTGN---GGIFEVC  540 (564)
Q Consensus       467 s~s~dg~i~iwd~~~~~~~~~~~--~h~~~i~~~~~spdg~~lasgs~-dg~i~iw~~~~~~~~~~~~~~---~~i~~~~  540 (564)
                      +....+.|++||.. |+.+.++.  +.......|++.|+|+.+++-+. ++.|.+|+ .+|+++.++...   .....|+
T Consensus       173 ~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~va  250 (279)
T d1q7fa_         173 SDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVA  250 (279)
T ss_dssp             EEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEE
T ss_pred             eeccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEE
Confidence            77788999999975 77777763  34455789999999998877554 45799998 568888887543   2478999


Q ss_pred             EccCCCEEEEEEcCCcEEEEEee
Q 008467          541 WNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       541 w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      .+++|+.++ +..+.+|.||.++
T Consensus       251 v~~dG~l~V-~~~n~~v~~fr~~  272 (279)
T d1q7fa_         251 LMDDGSVVL-ASKDYRLYIYRYV  272 (279)
T ss_dssp             EETTTEEEE-EETTTEEEEEECS
T ss_pred             EeCCCcEEE-EeCCCeEEEEEee
Confidence            999997555 5578999999875

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.12  E-value=1.1e-08  Score=96.31  Aligned_cols=228  Identities=12%  Similarity=0.051  Sum_probs=153.6

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEe
Q 008467          276 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE  355 (564)
Q Consensus       276 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~  355 (564)
                      ..+..++++|||+++++...++.|+.|+.++... .+....+.+.+++|+++|+.+++...++.+..|+.....-...  
T Consensus        28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~-~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~--  104 (302)
T d2p4oa1          28 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ-IHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE--  104 (302)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE-EEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE--
T ss_pred             CCcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEE-EEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEeccccccee--
Confidence            3578899999999999999999999999887644 3445667889999999999888888888888877543211000  


Q ss_pred             ecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeee
Q 008467          356 FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH  435 (564)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~  435 (564)
                                                .+.+          .......+.+++.++++++++.+.++.+..++...+....
T Consensus       105 --------------------------~~~~----------~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~  148 (302)
T d2p4oa1         105 --------------------------TLLT----------LPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSI  148 (302)
T ss_dssp             --------------------------EEEE----------CTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             --------------------------eccc----------cCCccccceeEEccCCCEEeeccccccceeeeccCCccee
Confidence                                      0000          1123356788999999999888888888888877654321


Q ss_pred             ecc----------cccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEE---EEEeCCCCCEEEEEEcC
Q 008467          436 DLR----------EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLL---YSLNGHREPVYSLAFSP  502 (564)
Q Consensus       436 ~~~----------~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~---~~~~~h~~~i~~~~~sp  502 (564)
                      ...          ........+.+..          ..++++.+..+.|..+++......   .... .......++|++
T Consensus       149 ~~~~~~~~~~~~~~~~~~~ngi~~~~----------~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~pdgia~d~  217 (302)
T d2p4oa1         149 WLEHPMLARSNSESVFPAANGLKRFG----------NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDV  217 (302)
T ss_dssp             EEECGGGSCSSTTCCSCSEEEEEEET----------TEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBT
T ss_pred             EecCCccceeeccCcccccccccccC----------CceeeecCCCCeEEecccccccccccccccc-CCCCCcceEECC
Confidence            111          0111233444432          135667778888888886543211   1111 123356799999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEEe---cCCCEEEEEE---ccCCCEEEEEEcC
Q 008467          503 TGEYLASGSLDKSMHIWSLKEGKIVKTYT---GNGGIFEVCW---NKEGDKIAACFAN  554 (564)
Q Consensus       503 dg~~lasgs~dg~i~iw~~~~~~~~~~~~---~~~~i~~~~w---~~~g~~la~~~~~  554 (564)
                      +|+++++...++.|..++.. |+......   +-...+.++|   ++|++.|.++...
T Consensus       218 dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         218 EGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             TCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCCEEEEEcCCCcEEEECCC-CCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            99998888889999999875 44333332   2345789999   7788988877554

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.08  E-value=1.1e-07  Score=91.81  Aligned_cols=240  Identities=14%  Similarity=0.141  Sum_probs=136.2

Q ss_pred             CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCc-ceeEEEee-cccCeEEEEcCCC--ceEEEEe--CCCeEEEEEcCC
Q 008467          315 HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE-EWKQQFEF-HSGPTLDVDWRNN--VSFATSS--TDNMIYVCKIGE  388 (564)
Q Consensus       315 h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~--~d~~i~~~~~~~  388 (564)
                      ...++..|+|+|+++.|++++. +.+..|.+... ........ .......+....+  ..|++..  ..+.+..+.+..
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~  116 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccC
Confidence            4445667999999999988765 45777765432 22221111 1111112222222  2233322  234444443321


Q ss_pred             C------------c----eeeE-ecCCCcceEEEEECCCCCEEEEEeC-CCcEEEEeCCCCeee---eec--ccccccEE
Q 008467          389 N------------R----PIKT-FAGHQGEVNCVKWDPTGSLLASCSD-DVTAKIWNMKQDKYV---HDL--REHSKEIY  445 (564)
Q Consensus       389 ~------------~----~~~~-~~~h~~~i~~v~~~~~~~~las~s~-dg~i~iwd~~~~~~~---~~~--~~~~~~i~  445 (564)
                      .            .    +... -......+.++.|+|+|++++++.. ...|.+|+......+   ..+  ........
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr  196 (365)
T d1jofa_         117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR  196 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred             CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceE
Confidence            1            0    0110 1112234679999999998877764 457888875433221   111  12345568


Q ss_pred             EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE--EEE---Ee--------------CCCCCEEEEEEcCCCCE
Q 008467          446 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL--LYS---LN--------------GHREPVYSLAFSPTGEY  506 (564)
Q Consensus       446 ~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~---~~--------------~h~~~i~~~~~spdg~~  506 (564)
                      .+.|+|++.        .+.++.-.+++|.+|++..++.  +..   +.              .+......+.++|||++
T Consensus       197 ~i~f~pdg~--------~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~  268 (365)
T d1jofa_         197 WVAMHPTGN--------YLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKY  268 (365)
T ss_dssp             EEEECTTSS--------EEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSE
T ss_pred             EEEECCCCc--------eEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCE
Confidence            889998875        4566777899999999875432  221   11              01123567899999999


Q ss_pred             EEEEeC------CCcEEEEeCCC-CeEEEEE------ecCCCEEEEEEcc-CCCEEEEE-EcCCcEEEEEee
Q 008467          507 LASGSL------DKSMHIWSLKE-GKIVKTY------TGNGGIFEVCWNK-EGDKIAAC-FANHTVCVLDFR  563 (564)
Q Consensus       507 lasgs~------dg~i~iw~~~~-~~~~~~~------~~~~~i~~~~w~~-~g~~la~~-~~~~~v~v~~~~  563 (564)
                      |+++..      .+.|..|++.. +.+....      ........++++| +|++|+++ ..++.|.||+++
T Consensus       269 lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~  340 (365)
T d1jofa_         269 MFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             EEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred             EEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEe
Confidence            987642      23477777754 3322111      1123457799998 89988777 456889999865

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.00  E-value=2.6e-07  Score=86.68  Aligned_cols=215  Identities=11%  Similarity=0.056  Sum_probs=146.0

Q ss_pred             ceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCC
Q 008467          218 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDG  297 (564)
Q Consensus       218 ~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg  297 (564)
                      .+..++++|||+++++...+++|..|+... ..           ..+.       .....+.+++|+++|+++++...++
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~~-----------~~~~-------~~~~~~~gla~~~dG~l~v~~~~~~   89 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDG-NQ-----------QIHA-------TVEGKVSGLAFTSNGDLVATGWNAD   89 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTC-CE-----------EEEE-------ECSSEEEEEEECTTSCEEEEEECTT
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCC-CE-----------EEEE-------cCCCCcceEEEcCCCCeEEEecCCc
Confidence            477899999999999999999888887432 10           1111       1124588999999999999988888


Q ss_pred             eEEEEECCC---ceeEe-ecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeec----------ccCeEE
Q 008467          298 QARIWSTNG---DLKCT-LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH----------SGPTLD  363 (564)
Q Consensus       298 ~i~vw~~~~---~~~~~-~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~----------~~~~~~  363 (564)
                      .+..|+..+   ..... ..........+.+.++++++++.+.++.+..+|..++.........          ......
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ng  169 (302)
T d2p4oa1          90 SIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANG  169 (302)
T ss_dssp             SCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEE
T ss_pred             eEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccc
Confidence            888876432   22211 1223456788999999998888888999999998776533222111          112345


Q ss_pred             EEcCCCceEEEEeCCCeEEEEEcCCCceeeE--ecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCee-eeecccc
Q 008467          364 VDWRNNVSFATSSTDNMIYVCKIGENRPIKT--FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY-VHDLREH  440 (564)
Q Consensus       364 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~--~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~-~~~~~~~  440 (564)
                      +.+..+..+++.+..+.|+.++.........  ..........++++++|+++++...++.|..++...... +......
T Consensus       170 i~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~  249 (302)
T d2p4oa1         170 LKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQG  249 (302)
T ss_dssp             EEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGT
T ss_pred             ccccCCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCC
Confidence            5566677788888899999888766432211  111223456799999999988888899999998764432 2333334


Q ss_pred             cccEEEEEEcc
Q 008467          441 SKEIYTIRWSP  451 (564)
Q Consensus       441 ~~~i~~i~~~p  451 (564)
                      ....++++|.+
T Consensus       250 ~~~pt~vafg~  260 (302)
T d2p4oa1         250 VIGSTAVAFGQ  260 (302)
T ss_dssp             CTTEEEEEECC
T ss_pred             CCCceEEEEcC
Confidence            44578899954

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.99  E-value=1.6e-07  Score=86.11  Aligned_cols=234  Identities=7%  Similarity=-0.026  Sum_probs=138.5

Q ss_pred             CCEEEEEeCCCCCEEEEe-eCCCcEEEEECCCcceeEEEeecccCeEEEEcC-CCceEEEEeCCCeEEEEEcCCCceeeE
Q 008467          317 GPIFSLKWNKKGDYLLTG-SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENRPIKT  394 (564)
Q Consensus       317 ~~V~~l~~~~~~~~l~s~-s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~  394 (564)
                      ..-.+|++.++|+..++. +..+.+..++...................+.+. +...+++....+.+++++-.....+..
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~   93 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP   93 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeee
Confidence            345789999999966654 455677777654432221111101112223332 223344444444444433333322222


Q ss_pred             ecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeE
Q 008467          395 FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTV  474 (564)
Q Consensus       395 ~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i  474 (564)
                      +. ......+++++++++++++-..+..+..++............-......+++.|.+.         ++++...++.|
T Consensus        94 ~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~---------~~v~~~~~~~i  163 (260)
T d1rwia_          94 FD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN---------VYVTDTDNNRV  163 (260)
T ss_dssp             CC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCC---------EEEEEGGGTEE
T ss_pred             ee-eeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCC---------Eeeeccccccc
Confidence            21 234578999999999888776677777777654432221111112335677777654         56666778889


Q ss_pred             EEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec--CCCEEEEEEccCCCEEEEEE
Q 008467          475 KLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG--NGGIFEVCWNKEGDKIAACF  552 (564)
Q Consensus       475 ~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~--~~~i~~~~w~~~g~~la~~~  552 (564)
                      ..+|...................|+++++|+++++....+.|..++..... ...+..  -.....|+++++|+.+++-.
T Consensus       164 ~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~-~~~~~~~~~~~P~~i~~d~~g~l~vad~  242 (260)
T d1rwia_         164 VKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-STVLPFTGLNTPLAVAVDSDRTVYVADR  242 (260)
T ss_dssp             EEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC-CEECCCCSCCCEEEEEECTTCCEEEEEG
T ss_pred             cccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe-EEEEccCCCCCeEEEEEeCCCCEEEEEC
Confidence            999987544333222344556899999999998888888889888765432 233222  23578999999999888877


Q ss_pred             cCCcEEEEE
Q 008467          553 ANHTVCVLD  561 (564)
Q Consensus       553 ~~~~v~v~~  561 (564)
                      .+++|..++
T Consensus       243 ~~~rI~~i~  251 (260)
T d1rwia_         243 GNDRVVKLT  251 (260)
T ss_dssp             GGTEEEEEC
T ss_pred             CCCEEEEEe
Confidence            888887664

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=3e-07  Score=84.31  Aligned_cols=215  Identities=14%  Similarity=0.107  Sum_probs=130.3

Q ss_pred             CCeEEEEECCCCCEEEEEeCCC---eEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCC-CcEEEE--ECCCcc
Q 008467          276 KDVTTLDWNGEGTLLATGSYDG---QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD-KTAIVW--DVKTEE  349 (564)
Q Consensus       276 ~~V~~l~~s~~g~~l~sg~~dg---~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D-~~v~iw--d~~~~~  349 (564)
                      ..+...+|||||+.||......   .+.+.+..+.....+..+.+......|+|+|..++..+.. +...++  ......
T Consensus        39 ~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~  118 (269)
T d2hqsa1          39 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ  118 (269)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred             CceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeEeeecCCccceeeccccccc
Confidence            4577889999999999765543   4666677777777777888899999999999988765543 332222  222222


Q ss_pred             eeEEEeecccCeE-EEEcCCCceEEEEeCCC--eEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCC-CcEEE
Q 008467          350 WKQQFEFHSGPTL-DVDWRNNVSFATSSTDN--MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD-VTAKI  425 (564)
Q Consensus       350 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~--~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~d-g~i~i  425 (564)
                      ............. ...+.....+.+...++  .|+..+..... ......+........|+|+++.++..+.+ +...+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i  197 (269)
T d2hqsa1         119 IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHI  197 (269)
T ss_dssp             EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC-CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEE
T ss_pred             ceeeeeccccccccccccccccceecccccCCceEeeeeccccc-ceeeecccccccccccccccceeEEEeecCCceee
Confidence            2221111111111 11223333444444444  45555555443 22334455667788999999988776654 44444


Q ss_pred             E--eCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeC--CCeEEEEeCCCCeEEEEEeCCCCCEEEEEEc
Q 008467          426 W--NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF--DSTVKLWDVELGKLLYSLNGHREPVYSLAFS  501 (564)
Q Consensus       426 w--d~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~s  501 (564)
                      |  +...+..  .+..+........|+|+|.        .++.+...  ...|.++++..+. ...+......+...+||
T Consensus       198 ~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~--------~i~f~s~~~~~~~l~~~~~dg~~-~~~lt~~~g~~~~p~WS  266 (269)
T d2hqsa1         198 AKQDLATGGV--QVLSSTFLDETPSLAPNGT--------MVIYSSSQGMGSVLNLVSTDGRF-KARLPATDGQVKFPAWS  266 (269)
T ss_dssp             EEEETTTCCE--EECCCSSSCEEEEECTTSS--------EEEEEEEETTEEEEEEEETTSCC-EEECCCSSSEEEEEEEC
T ss_pred             eEeecccccc--eEeecCccccceEECCCCC--------EEEEEEcCCCCcEEEEEECCCCC-EEEEeCCCCcEEeEEeC
Confidence            4  4444432  3334455667889999986        23333332  3468899998555 45566666678889999


Q ss_pred             C
Q 008467          502 P  502 (564)
Q Consensus       502 p  502 (564)
                      |
T Consensus       267 P  267 (269)
T d2hqsa1         267 P  267 (269)
T ss_dssp             C
T ss_pred             C
Confidence            8

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.98  E-value=1.1e-06  Score=82.65  Aligned_cols=241  Identities=11%  Similarity=0.131  Sum_probs=150.5

Q ss_pred             cceEEEEECCCCCEEEEEEC-------CCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE
Q 008467          217 SEVCACAWSPAGSLLASGSG-------DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL  289 (564)
Q Consensus       217 ~~V~~~~~sp~~~~lasgs~-------D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~  289 (564)
                      ......+|.|+|+++++...       ++.|..|+..++...         .  ...  .........-..++|.++|+.
T Consensus        18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~---------~--~~~--~~~~~~~g~P~Gl~~~~dg~~   84 (314)
T d1pjxa_          18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT---------V--ICK--PEVNGYGGIPAGCQCDRDANQ   84 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEE---------E--EEC--CEETTEECCEEEEEECSSSSE
T ss_pred             CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEE---------E--EEC--CccccCCCcceeEEEeCCCCE
Confidence            34567899999998776432       466888887654310         0  000  000001123467999999998


Q ss_pred             EEEEeCCCeEEEEECCCceeEeecCCC-C----CEEEEEeCCCCCEEEEeeC---------------CCcEEEEECCCcc
Q 008467          290 LATGSYDGQARIWSTNGDLKCTLSKHK-G----PIFSLKWNKKGDYLLTGSC---------------DKTAIVWDVKTEE  349 (564)
Q Consensus       290 l~sg~~dg~i~vw~~~~~~~~~~~~h~-~----~V~~l~~~~~~~~l~s~s~---------------D~~v~iwd~~~~~  349 (564)
                      ++++...+.+...+.++.....+.... +    ....+.+.++|+..++-..               ++.|..++.. ++
T Consensus        85 l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~  163 (314)
T d1pjxa_          85 LFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ  163 (314)
T ss_dssp             EEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC
T ss_pred             EEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-Cc
Confidence            888888788888888876554332211 1    2467889999987776432               2344444432 33


Q ss_pred             eeEEEeecccCeEEEEcC--CC----ceEEEEeCCCeEEEEEcCCCceee------EecC-CCcceEEEEECCCCCEEEE
Q 008467          350 WKQQFEFHSGPTLDVDWR--NN----VSFATSSTDNMIYVCKIGENRPIK------TFAG-HQGEVNCVKWDPTGSLLAS  416 (564)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~d~~i~~~~~~~~~~~~------~~~~-h~~~i~~v~~~~~~~~las  416 (564)
                      ...... .......+.|.  .+    ..+++-+..+.|+.+++.....+.      .+.+ +.+....+++..+|++.++
T Consensus       164 ~~~~~~-~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa  242 (314)
T d1pjxa_         164 MIQVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVA  242 (314)
T ss_dssp             EEEEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEE
T ss_pred             eeEeeC-CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEE
Confidence            222221 11122233442  22    245666778889888875443221      1222 2234568999999999888


Q ss_pred             EeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCC
Q 008467          417 CSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE  480 (564)
Q Consensus       417 ~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~  480 (564)
                      ....+.|.+||...+.....+..+.....+++|.|++.        .+.++.+.+|.|.-.++.
T Consensus       243 ~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~--------~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         243 NWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTK--------TIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSS--------EEEEEETTTTEEEEEECS
T ss_pred             EcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCC--------EEEEEECCCCcEEEEECC
Confidence            88899999999887776666666666788999988653        356777778888887764

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.96  E-value=1.5e-07  Score=86.17  Aligned_cols=235  Identities=9%  Similarity=-0.008  Sum_probs=140.0

Q ss_pred             eEEEEECCCCCEEEEE-eCCCeEEEEECCCceeEeecC-CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEe
Q 008467          278 VTTLDWNGEGTLLATG-SYDGQARIWSTNGDLKCTLSK-HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE  355 (564)
Q Consensus       278 V~~l~~s~~g~~l~sg-~~dg~i~vw~~~~~~~~~~~~-h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~  355 (564)
                      -..++++++|++.++. +..+.+..++..+.....+.. -.....+++++++|+.+++....+.+++++..+........
T Consensus        16 P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~   95 (260)
T d1rwia_          16 PSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFD   95 (260)
T ss_dssp             EEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCC
T ss_pred             CCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeee
Confidence            4688999999976665 455778777765543332221 11234678899999888777777777776655444332221


Q ss_pred             ecccCeEEEEcCCC-ceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeee
Q 008467          356 FHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV  434 (564)
Q Consensus       356 ~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~  434 (564)
                      .. ....++.+..+ ..+++...+..+..++..................+++++++++++++...++.|..++.......
T Consensus        96 ~~-~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~  174 (260)
T d1rwia_          96 GL-NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV  174 (260)
T ss_dssp             SC-CSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEE
T ss_pred             ee-eecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccceee
Confidence            11 12334443222 33344344444544444332211111112234578999999999888888899999998765443


Q ss_pred             eecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCC
Q 008467          435 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK  514 (564)
Q Consensus       435 ~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg  514 (564)
                      ............+++.+++.         ++++....+.|..++.............-.....|+++++|.++++-..++
T Consensus       175 ~~~~~~~~~p~gi~~d~~g~---------l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~  245 (260)
T d1rwia_         175 VLPFTDITAPWGIAVDEAGT---------VYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGND  245 (260)
T ss_dssp             ECCCSSCCSEEEEEECTTCC---------EEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGT
T ss_pred             eeeccccCCCccceeeeeee---------eeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCC
Confidence            32223344567888887764         566666778888887654332211122224568999999999888877777


Q ss_pred             cEEEEeCC
Q 008467          515 SMHIWSLK  522 (564)
Q Consensus       515 ~i~iw~~~  522 (564)
                      +|+.++..
T Consensus       246 rI~~i~~~  253 (260)
T d1rwia_         246 RVVKLTSL  253 (260)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEeCC
Confidence            78776654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.93  E-value=3.9e-07  Score=85.82  Aligned_cols=234  Identities=10%  Similarity=0.087  Sum_probs=137.9

Q ss_pred             eEEEEECCCCCEEEEEeC-------CCeEEEEECCCceeEeecC-----CCCCEEEEEeCCCCCEEEEeeCCCcEEEEEC
Q 008467          278 VTTLDWNGEGTLLATGSY-------DGQARIWSTNGDLKCTLSK-----HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV  345 (564)
Q Consensus       278 V~~l~~s~~g~~l~sg~~-------dg~i~vw~~~~~~~~~~~~-----h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~  345 (564)
                      .-.++|.++|++.++...       +|.|..|+..+.....+..     ..+.-.++.|.++++.++++...+.+...|.
T Consensus        20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~   99 (314)
T d1pjxa_          20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQT   99 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEET
T ss_pred             CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeC
Confidence            556789999998876433       4678888876554333221     1223568999999998888887778888887


Q ss_pred             CCcceeEEEeeccc----CeEEEEcCCCc-eEEEEeC---------------CCeEEEEEcCCCceeeEecCCCcceEEE
Q 008467          346 KTEEWKQQFEFHSG----PTLDVDWRNNV-SFATSST---------------DNMIYVCKIGENRPIKTFAGHQGEVNCV  405 (564)
Q Consensus       346 ~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~---------------d~~i~~~~~~~~~~~~~~~~h~~~i~~v  405 (564)
                      .++..........+    ...++....+. .+++...               .+.++.++.  ......+...-...+.+
T Consensus       100 ~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~--dg~~~~~~~~~~~pNGi  177 (314)
T d1pjxa_         100 DGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT--DGQMIQVDTAFQFPNGI  177 (314)
T ss_dssp             TSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT--TSCEEEEEEEESSEEEE
T ss_pred             CCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee--cCceeEeeCCcceeeee
Confidence            65432211111111    11233332222 2222110               122333222  11122222222335678


Q ss_pred             EECCCCC-----EEEEEeCCCcEEEEeCCCCeeee------eccc-ccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCe
Q 008467          406 KWDPTGS-----LLASCSDDVTAKIWNMKQDKYVH------DLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDST  473 (564)
Q Consensus       406 ~~~~~~~-----~las~s~dg~i~iwd~~~~~~~~------~~~~-~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~  473 (564)
                      +|+|++.     ++++-+..+.|..|++.....+.      .+.. .....-.+++.++|.         +.++....+.
T Consensus       178 ~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn---------lyVa~~~~g~  248 (314)
T d1pjxa_         178 AVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN---------LLVANWGSSH  248 (314)
T ss_dssp             EEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC---------EEEEEETTTE
T ss_pred             EECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCc---------EEEEEcCCCE
Confidence            9988764     55666778888888865433221      1111 112234566666654         4455667789


Q ss_pred             EEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCC
Q 008467          474 VKLWDVELGKLLYSLNGHREPVYSLAFSPTGE-YLASGSLDKSMHIWSLK  522 (564)
Q Consensus       474 i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~-~lasgs~dg~i~iw~~~  522 (564)
                      |.+||.+.++.+..+.......++++|.||++ ++++.+..|+|..+++.
T Consensus       249 I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         249 IEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             EEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            99999987776666665556789999999997 45666777888888764

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.90  E-value=2.5e-06  Score=78.68  Aligned_cols=235  Identities=12%  Similarity=0.186  Sum_probs=149.6

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCC------CCCEEEEEeCCCC-CEEEE-eeCCCcEEEEECCCc
Q 008467          277 DVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKH------KGPIFSLKWNKKG-DYLLT-GSCDKTAIVWDVKTE  348 (564)
Q Consensus       277 ~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h------~~~V~~l~~~~~~-~~l~s-~s~D~~v~iwd~~~~  348 (564)
                      .-..++++++|+++++-..++.|++|+.+|.....+...      ...-..+.+.++. ..+++ .+.++.|.+++. .+
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~g  102 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YG  102 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TS
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-cc
Confidence            457899999999888877889999999998877655321      1123445554443 34443 344567777775 34


Q ss_pred             ceeEEEeec-ccCeEEEEcCC-CceEEEEeCCCeEEEEEcCCCceeeEe--cCCCcceEEEEECCCCCEEEEEeCCCcEE
Q 008467          349 EWKQQFEFH-SGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTF--AGHQGEVNCVKWDPTGSLLASCSDDVTAK  424 (564)
Q Consensus       349 ~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~--~~h~~~i~~v~~~~~~~~las~s~dg~i~  424 (564)
                      .....+... ......+.... ...+++....+.+.+++.. ++.+..+  ..+......+++.++++++++....+.|+
T Consensus       103 ~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~  181 (279)
T d1q7fa_         103 QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVK  181 (279)
T ss_dssp             CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEE
T ss_pred             cceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeecccccee
Confidence            444444221 11122233222 2344444455556655543 3344444  23455678899999999999998899999


Q ss_pred             EEeCCCCeeeeecc--cccccEEEEEEccCCCCCCCCCCcEEEEEEe-CCCeEEEEeCCCCeEEEEEeCC--CCCEEEEE
Q 008467          425 IWNMKQDKYVHDLR--EHSKEIYTIRWSPTGSGTNNPNQQLILASAS-FDSTVKLWDVELGKLLYSLNGH--REPVYSLA  499 (564)
Q Consensus       425 iwd~~~~~~~~~~~--~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~h--~~~i~~~~  499 (564)
                      +||... +.+..+-  +.......|++.|+|.         ++++-+ .++.|.+|+. .|+.+.++...  ......|+
T Consensus       182 ~~d~~G-~~~~~~g~~g~~~~P~giavD~~G~---------i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~va  250 (279)
T d1q7fa_         182 VFNYEG-QYLRQIGGEGITNYPIGVGINSNGE---------ILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVA  250 (279)
T ss_dssp             EEETTC-CEEEEESCTTTSCSEEEEEECTTCC---------EEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEE
T ss_pred             eeecCC-ceeeeecccccccCCcccccccCCe---------EEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEE
Confidence            999754 4454442  2334567888888774         344433 4557999985 48877766432  23478999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCCe
Q 008467          500 FSPTGEYLASGSLDKSMHIWSLKEGK  525 (564)
Q Consensus       500 ~spdg~~lasgs~dg~i~iw~~~~~~  525 (564)
                      +.|||.+++ ++.+.+|++|......
T Consensus       251 v~~dG~l~V-~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         251 LMDDGSVVL-ASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             EETTTEEEE-EETTTEEEEEECSCCC
T ss_pred             EeCCCcEEE-EeCCCeEEEEEeeeec
Confidence            999998655 5678999999987643

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.88  E-value=1.5e-06  Score=83.75  Aligned_cols=250  Identities=8%  Similarity=0.036  Sum_probs=134.1

Q ss_pred             ccceEEEEECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEE--EEE
Q 008467          216 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL--ATG  293 (564)
Q Consensus       216 ~~~V~~~~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l--~sg  293 (564)
                      ...+.-++|+|++++|++... +.+..|.+.....          ........     .......++++++++.+  +++
T Consensus        39 ~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~----------~~~~~~~~-----~~~~p~~v~~~~~~~~~~v~~a  102 (365)
T d1jofa_          39 DEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTE----------IVHEASHP-----IGGHPRANDADTNTRAIFLLAA  102 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTE----------EEEEEEEE-----CCSSGGGGCTTSCCEEEEEEEC
T ss_pred             CCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCC----------eEEEeeec-----CCCCcEEEEECCCCCEEEEEEe
Confidence            344567999999999887754 4577776643210          01000000     01123345566777633  222


Q ss_pred             eC-CCeEEEEECC--------------CceeE----eecCCCCCEEEEEeCCCCCEEEEeeC-CCcEEEEECCCcceeEE
Q 008467          294 SY-DGQARIWSTN--------------GDLKC----TLSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQQ  353 (564)
Q Consensus       294 ~~-dg~i~vw~~~--------------~~~~~----~~~~h~~~V~~l~~~~~~~~l~s~s~-D~~v~iwd~~~~~~~~~  353 (564)
                      .+ .+.+..+...              +....    .......-+.++.|+|+|+++++++. ...|.+|+.........
T Consensus       103 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~  182 (365)
T d1jofa_         103 KQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVEL  182 (365)
T ss_dssp             SSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEE
T ss_pred             cCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceee
Confidence            21 2444443321              11110    01112234789999999999887764 34677776433211100


Q ss_pred             EeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEE-EeCCCcEEEEeCCCCe
Q 008467          354 FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLAS-CSDDVTAKIWNMKQDK  432 (564)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las-~s~dg~i~iwd~~~~~  432 (564)
                      ..                                   .+. ..........++|+|+++++.. +-.+++|.+|++....
T Consensus       183 ~~-----------------------------------~~~-~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~  226 (365)
T d1jofa_         183 VG-----------------------------------SVD-APDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT  226 (365)
T ss_dssp             EE-----------------------------------EEE-CSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             cc-----------------------------------cee-ecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCC
Confidence            00                                   000 0112234677999999998755 4458899999986553


Q ss_pred             ee--eecc-----------------cccccEEEEEEccCCCCCCCCCCcEEEEEEeCC-----CeEEEEeCCCC-eEEE-
Q 008467          433 YV--HDLR-----------------EHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-----STVKLWDVELG-KLLY-  486 (564)
Q Consensus       433 ~~--~~~~-----------------~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~-~~~~-  486 (564)
                      ..  ....                 .+......+.++|+|.        .++++...+     +.|..|++... .... 
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~--------~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~  298 (365)
T d1jofa_         227 HMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGK--------YMFASSRANKFELQGYIAGFKLRDCGSIEKQ  298 (365)
T ss_dssp             CCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSS--------EEEEEEEESSTTSCCEEEEEEECTTSCEEEE
T ss_pred             ceEEEEeeeeccccccccccccccccccCCccceEECCCCC--------EEEEEcccCCCccceEEEEEEecCCCceeeE
Confidence            21  1110                 1112345678888875        233433222     23777776542 2211 


Q ss_pred             -EE---eCCCCCEEEEEEcC-CCCEEEEE-eCCCcEEEEeCCCCe
Q 008467          487 -SL---NGHREPVYSLAFSP-TGEYLASG-SLDKSMHIWSLKEGK  525 (564)
Q Consensus       487 -~~---~~h~~~i~~~~~sp-dg~~lasg-s~dg~i~iw~~~~~~  525 (564)
                       .+   .........++|+| +|++|+++ ..++.|.+|++....
T Consensus       299 ~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         299 LFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             EEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             eEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence             11   11223457799998 89988766 467899999876554

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.3e-06  Score=87.00  Aligned_cols=292  Identities=10%  Similarity=0.101  Sum_probs=152.4

Q ss_pred             ceEEEEECCCCCEEEEEE---------CCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467          218 EVCACAWSPAGSLLASGS---------GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  288 (564)
Q Consensus       218 ~V~~~~~sp~~~~lasgs---------~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  288 (564)
                      .+....||||+++++.+.         ..+...|+|+.++....              .. ........+....|||||+
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~--------------l~-~~~~~~~~l~~~~wSPDG~  126 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQS--------------LD-PPEVSNAKLQYAGWGPKGQ  126 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEE--------------CC-CTTCCSCCCSBCCBCSSTT
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceee--------------cc-CccCCccccceeeeccCCc
Confidence            456778999999877653         34667788887654210              00 0011123355678999999


Q ss_pred             EEEEEeCCCeEEEEECCCceeE--eecCCCCCE-----------------EEEEeCCCCCEEEEeeCC-CcEEE------
Q 008467          289 LLATGSYDGQARIWSTNGDLKC--TLSKHKGPI-----------------FSLKWNKKGDYLLTGSCD-KTAIV------  342 (564)
Q Consensus       289 ~l~sg~~dg~i~vw~~~~~~~~--~~~~h~~~V-----------------~~l~~~~~~~~l~s~s~D-~~v~i------  342 (564)
                      .+|-.. ++.+.+.+..+....  +..+..+.|                 .++-|||+|++|+....| ..|..      
T Consensus       127 ~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~  205 (465)
T d1xfda1         127 QLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTY  205 (465)
T ss_dssp             CEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCC
T ss_pred             eEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccc
Confidence            998865 567777775443222  222222222                 467899999999887543 22333      


Q ss_pred             ---------------------------EECCCcceeEEEee------cccCeEEEEcCCCceEEEEeC--C---CeEEEE
Q 008467          343 ---------------------------WDVKTEEWKQQFEF------HSGPTLDVDWRNNVSFATSST--D---NMIYVC  384 (564)
Q Consensus       343 ---------------------------wd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~--d---~~i~~~  384 (564)
                                                 +|+.++........      ...-+..+.|.++..++....  +   ..+.++
T Consensus       206 ~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~  285 (465)
T d1xfda1         206 TGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLC  285 (465)
T ss_dssp             SSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEE
T ss_pred             cccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEE
Confidence                                       33322211110000      000123456766655543321  1   246677


Q ss_pred             EcCCCceeeEecCC-Ccce----EEEEECCCCCEEE--EEe-CCCc--EEEEeC------CCCeeeeecccccccEEEE-
Q 008467          385 KIGENRPIKTFAGH-QGEV----NCVKWDPTGSLLA--SCS-DDVT--AKIWNM------KQDKYVHDLREHSKEIYTI-  447 (564)
Q Consensus       385 ~~~~~~~~~~~~~h-~~~i----~~v~~~~~~~~la--s~s-~dg~--i~iwd~------~~~~~~~~~~~~~~~i~~i-  447 (564)
                      +..+++....+..+ .+.|    ....|+++|+.++  ..+ .+|.  +....+      ..++.+..+....-.|..+ 
T Consensus       286 d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~  365 (465)
T d1xfda1         286 DATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKIL  365 (465)
T ss_dssp             ETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEE
T ss_pred             cCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEE
Confidence            77777654444322 2222    2467899998532  233 2332  222221      1222233333333345554 


Q ss_pred             EEccCCCCCCCCCCcEEEEEEeCCC--eEEEE--eCCCCeEEEEEe---CCCCCEEEEEEcCCCCEEEEEeC---CCcEE
Q 008467          448 RWSPTGSGTNNPNQQLILASASFDS--TVKLW--DVELGKLLYSLN---GHREPVYSLAFSPTGEYLASGSL---DKSMH  517 (564)
Q Consensus       448 ~~~p~~~~~~~~~~~~~l~s~s~dg--~i~iw--d~~~~~~~~~~~---~h~~~i~~~~~spdg~~lasgs~---dg~i~  517 (564)
                      .|.+.+.        .+..++..++  .-.||  ++..+.....+.   .......++.|||+|++++....   --.+.
T Consensus       366 ~~d~~~~--------~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~  437 (465)
T d1xfda1         366 AYDEKGN--------KIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVT  437 (465)
T ss_dssp             EEETTTT--------EEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEE
T ss_pred             EEcCCCC--------EEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEeecCCCCeEE
Confidence            4665543        2334444332  22233  333222211111   23345679999999999884333   35688


Q ss_pred             EEeCCCCeEEEEEecC
Q 008467          518 IWSLKEGKIVKTYTGN  533 (564)
Q Consensus       518 iw~~~~~~~~~~~~~~  533 (564)
                      +++..+++.+..++.+
T Consensus       438 ~~~~~~~~~~~~Le~N  453 (465)
T d1xfda1         438 VHNTTDKKKMFDLETN  453 (465)
T ss_dssp             EEETTTCCEEEEEECC
T ss_pred             EEECCCCCEEEEEcCC
Confidence            9999999988887654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.73  E-value=2.9e-05  Score=72.78  Aligned_cols=228  Identities=9%  Similarity=0.053  Sum_probs=140.7

Q ss_pred             CCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCce-EEEEeC----CCeEEEEEcCCCce
Q 008467          317 GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS-FATSST----DNMIYVCKIGENRP  391 (564)
Q Consensus       317 ~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----d~~i~~~~~~~~~~  391 (564)
                      ..+.+++|.++|+..++-...++|..||..++.....+.........+.+..+.. +++...    .+.+...+......
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~  119 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL  119 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCcee
Confidence            3456889999998777777889999999887765555444444455566554433 333322    12333333333322


Q ss_pred             eeEecC--CCcceEEEEECCCCCEEEEEeCC------CcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcE
Q 008467          392 IKTFAG--HQGEVNCVKWDPTGSLLASCSDD------VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQL  463 (564)
Q Consensus       392 ~~~~~~--h~~~i~~v~~~~~~~~las~s~d------g~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~  463 (564)
                      ......  -....+.+++.++|++.++....      +.+..++.... .+..+...-.....++|+|++.        .
T Consensus       120 ~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~~~~~pnGia~s~dg~--------~  190 (319)
T d2dg1a1         120 QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQNISVANGIALSTDEK--------V  190 (319)
T ss_dssp             EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEEEESSEEEEEECTTSS--------E
T ss_pred             eeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccc-eeEEEeeccceeeeeeeccccc--------e
Confidence            222211  12347789999999987765332      23444443332 2222222223346789998874        3


Q ss_pred             EEEEEeCCCeEEEEeCCCC-e---EEE----EEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCC-
Q 008467          464 ILASASFDSTVKLWDVELG-K---LLY----SLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-  534 (564)
Q Consensus       464 ~l~s~s~dg~i~iwd~~~~-~---~~~----~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~-  534 (564)
                      +.++-+..+.|..|++... .   ...    ...........+++.++|++.++....+.|.+|+. +|+++..+.... 
T Consensus       191 lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~  269 (319)
T d2dg1a1         191 LWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGR  269 (319)
T ss_dssp             EEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTG
T ss_pred             EEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCc
Confidence            4566677899999987532 1   111    11111223568999999999998888999999995 688888775322 


Q ss_pred             ------CEEEEEEccCCCEEEEEEcC
Q 008467          535 ------GIFEVCWNKEGDKIAACFAN  554 (564)
Q Consensus       535 ------~i~~~~w~~~g~~la~~~~~  554 (564)
                            .+++++|.++++.+.++..+
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~t~~~  295 (319)
T d2dg1a1         270 DEGHMLRSTHPQFIPGTNQLIICSND  295 (319)
T ss_dssp             GGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             CCCcCceeeeEEEeCCCCEEEEEcCC
Confidence                  36789999999888777543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=2.4e-06  Score=84.91  Aligned_cols=114  Identities=14%  Similarity=0.190  Sum_probs=73.9

Q ss_pred             EECCCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEe--------
Q 008467          223 AWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS--------  294 (564)
Q Consensus       223 ~~sp~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~--------  294 (564)
                      .|.+++.++.. ..||.+.+|++.++...         .+ + .   ........+....|||||++++.+.        
T Consensus        23 ~W~~~~~~~~~-~~~g~i~~~~~~~~~~~---------~l-~-~---~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~   87 (465)
T d1xfda1          23 KWISDTEFIYR-EQKGTVRLWNVETNTST---------VL-I-E---GKKIESLRAIRYEISPDREYALFSYNVEPIYQH   87 (465)
T ss_dssp             CBSSSSCBCCC-CSSSCEEEBCGGGCCCE---------EE-E-C---TTTTTTTTCSEEEECTTSSEEEEEESCCCCSSS
T ss_pred             EEeCCCcEEEE-eCCCcEEEEECCCCCEE---------EE-E-c---CccccccccceeEECCCCCeEEEEEcccceeEe
Confidence            58888876654 46788999998765421         00 1 0   1111223566788999999988764        


Q ss_pred             -CCCeEEEEECCCceeEeec---CCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeE
Q 008467          295 -YDGQARIWSTNGDLKCTLS---KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ  352 (564)
Q Consensus       295 -~dg~i~vw~~~~~~~~~~~---~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~  352 (564)
                       ..+.+.++|........+.   .....+....|||+|+.|+-.. ++.+.+.+..++..++
T Consensus        88 s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~  148 (465)
T d1xfda1          88 SYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIR  148 (465)
T ss_dssp             CCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEE
T ss_pred             eccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEE
Confidence             3577888887654333332   2234455678999999987765 6778888877665444

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.60  E-value=4.9e-05  Score=71.14  Aligned_cols=225  Identities=12%  Similarity=0.100  Sum_probs=134.0

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEECCCce-eEeecCCCCCEEEEEeCCCCCEEEEeeCC----CcEEEEECCCccee
Q 008467          277 DVTTLDWNGEGTLLATGSYDGQARIWSTNGDL-KCTLSKHKGPIFSLKWNKKGDYLLTGSCD----KTAIVWDVKTEEWK  351 (564)
Q Consensus       277 ~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~D----~~v~iwd~~~~~~~  351 (564)
                      .+..++|.++|++.++-...|.|..|+.++.. ...+........+++++++|+.+++...+    +.+...+..+....
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~  120 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ  120 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceee
Confidence            35678999999988887788999999987653 33444555677899999999877765433    33555555555444


Q ss_pred             EEEeecc--cCeEEEEcCCCceEEEEeCC-------CeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEE-EEEeCCC
Q 008467          352 QQFEFHS--GPTLDVDWRNNVSFATSSTD-------NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL-ASCSDDV  421 (564)
Q Consensus       352 ~~~~~~~--~~~~~~~~~~~~~~~~~~~d-------~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~l-as~s~dg  421 (564)
                      .......  ....++.+..+..+..+...       +.++.++... ..+..+...-...+.++|+|+++.| ++-+..+
T Consensus       121 ~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg-~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~  199 (319)
T d2dg1a1         121 DIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF-RTVTPIIQNISVANGIALSTDEKVLWVTETTAN  199 (319)
T ss_dssp             EEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS-CCEEEEEEEESSEEEEEECTTSSEEEEEEGGGT
T ss_pred             eeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccc-ceeEEEeeccceeeeeeeccccceEEEecccCC
Confidence            3332111  12234444333333222211       1233332222 2222222223345789999999855 5566788


Q ss_pred             cEEEEeCCCCee-eeec-------ccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEe----
Q 008467          422 TAKIWNMKQDKY-VHDL-------REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN----  489 (564)
Q Consensus       422 ~i~iwd~~~~~~-~~~~-------~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----  489 (564)
                      .|..|++..... ....       .........+++.++|.         +.++....+.|.+||. .|+.+.++.    
T Consensus       200 ~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~---------l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~  269 (319)
T d2dg1a1         200 RLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN---------LYVAMYGQGRVLVFNK-RGYPIGQILIPGR  269 (319)
T ss_dssp             EEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC---------EEEEEETTTEEEEECT-TSCEEEEEECTTG
T ss_pred             ceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCC---------EEEEEcCCCEEEEECC-CCcEEEEEeCCCc
Confidence            999998754321 1100       01111234566666664         5566677899999996 588887764    


Q ss_pred             --CCCCCEEEEEEcCCCCEEEEEeC
Q 008467          490 --GHREPVYSLAFSPTGEYLASGSL  512 (564)
Q Consensus       490 --~h~~~i~~~~~spdg~~lasgs~  512 (564)
                        ++...+++++|.|++..+++.+.
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         270 DEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             GGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             CCCcCceeeeEEEeCCCCEEEEEcC
Confidence              23345789999998877765543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.45  E-value=8.9e-06  Score=74.43  Aligned_cols=229  Identities=13%  Similarity=0.084  Sum_probs=119.1

Q ss_pred             ECCC--CCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeC-CC-----cEEEEECCCcceeEEE
Q 008467          283 WNGE--GTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC-DK-----TAIVWDVKTEEWKQQF  354 (564)
Q Consensus       283 ~s~~--g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-D~-----~v~iwd~~~~~~~~~~  354 (564)
                      .|||  |+.++-.+ +|.|.+.+..+.....+..+.+.+...+|||||++|+-.+. ++     .|.++++.+++..+..
T Consensus         6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt   84 (281)
T d1k32a2           6 LNPDIHGDRIIFVC-CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRIT   84 (281)
T ss_dssp             EEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECC
T ss_pred             cCCCCCCCEEEEEe-CCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEee
Confidence            4678  88887664 46788889888777778888888999999999999875432 21     2445555554432210


Q ss_pred             eecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeCC------CcEEEEeC
Q 008467          355 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD------VTAKIWNM  428 (564)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~d------g~i~iwd~  428 (564)
                      .. .                                  ............+.|+|+|+.|+.....      ..+...+.
T Consensus        85 ~~-~----------------------------------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~  129 (281)
T d1k32a2          85 YF-S----------------------------------GKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVEN  129 (281)
T ss_dssp             CC-C----------------------------------EEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEG
T ss_pred             ec-C----------------------------------CCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecC
Confidence            00 0                                  0001112234568899999988765332      12344444


Q ss_pred             CCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC-----------CeEEEEeCCCCeEEEEEeCCCCCEEE
Q 008467          429 KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-----------STVKLWDVELGKLLYSLNGHREPVYS  497 (564)
Q Consensus       429 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d-----------g~i~iwd~~~~~~~~~~~~h~~~i~~  497 (564)
                      .........   ...... .|.+++.        .+++....+           ....++........... .+......
T Consensus       130 ~~~~~~~~~---~~~~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  196 (281)
T d1k32a2         130 DGINFVPLN---LGPATH-ILFADGR--------RVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIV-DMSTHVSS  196 (281)
T ss_dssp             GGTEEEECC---SCSCSE-EEEETTE--------EEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEE-CCSSCCEE
T ss_pred             CCceeEEec---CCccce-eeecCCC--------eEEEeeccccceeeeeccCCcceeeeeccccceeecc-CCccccce
Confidence            444332211   111111 2222221        111111111           11111122222222222 23334455


Q ss_pred             EEEcCCCCEEEEEeC--CCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          498 LAFSPTGEYLASGSL--DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       498 ~~~spdg~~lasgs~--dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                      ..++++..+ .....  ...|.++++.++++.. +..........|+|||++|+.. .++.+.++|+.
T Consensus       197 ~~~~~~~~~-~~~~~~~~~~l~~~d~~g~~~~~-lt~~~~~~~~~~SpDG~~I~f~-~~~~l~~~d~~  261 (281)
T d1k32a2         197 PVIVGHRIY-FITDIDGFGQIYSTDLDGKDLRK-HTSFTDYYPRHLNTDGRRILFS-KGGSIYIFNPD  261 (281)
T ss_dssp             EEEETTEEE-EEECTTSSCEEEEEETTSCSCEE-CCCCCSSCEEEEEESSSCEEEE-ETTEEEEECTT
T ss_pred             eeeeccccc-eecccccccceEEEeCCCCceEE-eecCCCcccccCcCCCCEEEEE-eCCEEEEEECC
Confidence            566665322 22222  2357788887766443 2323333445799999999886 46788888763

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.42  E-value=0.0004  Score=63.82  Aligned_cols=224  Identities=12%  Similarity=0.074  Sum_probs=143.1

Q ss_pred             EEEECC-CCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecc
Q 008467          280 TLDWNG-EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS  358 (564)
Q Consensus       280 ~l~~s~-~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~  358 (564)
                      ...|.+ ++.+..+=-..+.|.-|+..+.....+. ....+.++.+.++|..+++ +. ..+.++|..+++........ 
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~-~~~~~~~i~~~~dg~l~va-~~-~gl~~~d~~tg~~~~l~~~~-   97 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKTVHA-LPFMGSALAKISDSKQLIA-SD-DGLFLRDTATGVLTLHAELE-   97 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE-CSSCEEEEEEEETTEEEEE-ET-TEEEEEETTTCCEEEEECSS-
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEE-CCCCcEEEEEecCCCEEEE-Ee-CccEEeecccceeeEEeeee-
Confidence            345776 4455555446688888997766554442 3456788999888866655 44 45888898877643221100 


Q ss_pred             cCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC----CCcEEEEeCCCCeee
Q 008467          359 GPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD----DVTAKIWNMKQDKYV  434 (564)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~----dg~i~iwd~~~~~~~  434 (564)
                                                   ..       .....++.+.+.|+|++.++...    .+.-.+|.+..++..
T Consensus        98 -----------------------------~~-------~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~  141 (295)
T d2ghsa1          98 -----------------------------SD-------LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVT  141 (295)
T ss_dssp             -----------------------------TT-------CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEE
T ss_pred             -----------------------------cC-------CCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEE
Confidence                                         00       01224667788888887665432    223455655555443


Q ss_pred             eecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC------Ce--EEEEEeCCCCCEEEEEEcCCCCE
Q 008467          435 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL------GK--LLYSLNGHREPVYSLAFSPTGEY  506 (564)
Q Consensus       435 ~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~------~~--~~~~~~~h~~~i~~~~~spdg~~  506 (564)
                      ..+.. -..-..+.|++++.        .++++-+..+.|..+++..      ++  ....+.+.......+++..+|++
T Consensus       142 ~~~~~-~~~~Ng~~~s~d~~--------~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~Gnl  212 (295)
T d2ghsa1         142 KLFAD-ISIPNSICFSPDGT--------TGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHI  212 (295)
T ss_dssp             EEEEE-ESSEEEEEECTTSC--------EEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCE
T ss_pred             EEeec-cCCcceeeecCCCc--------eEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCE
Confidence            33222 22346788888764        3566777888999888642      11  12223334455788999999998


Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEEEecC-CCEEEEEEc-cCCCEEEEEEc
Q 008467          507 LASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWN-KEGDKIAACFA  553 (564)
Q Consensus       507 lasgs~dg~i~iw~~~~~~~~~~~~~~-~~i~~~~w~-~~g~~la~~~~  553 (564)
                      .++.-..+.|..|+. +|+++..+.-. ..++++||- ++.+.|.+.+.
T Consensus       213 Wva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         213 WNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             EEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             EeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCCEEEEEEC
Confidence            888777889999995 68888888764 458999996 67787776544

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.81  E-value=0.012  Score=53.57  Aligned_cols=208  Identities=10%  Similarity=0.059  Sum_probs=132.9

Q ss_pred             EEEEECCC-CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCe
Q 008467          220 CACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQ  298 (564)
Q Consensus       220 ~~~~~sp~-~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~dg~  298 (564)
                      .+..|++. +.++.+=-..+.|..|+..++..         .  .. .       ....+.++++.++|.++++ +.+ .
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~---------~--~~-~-------~~~~~~~i~~~~dg~l~va-~~~-g   79 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRK---------T--VH-A-------LPFMGSALAKISDSKQLIA-SDD-G   79 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEE---------E--EE-E-------CSSCEEEEEEEETTEEEEE-ETT-E
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeE---------E--EE-E-------CCCCcEEEEEecCCCEEEE-EeC-c
Confidence            45679885 45555544668888898776531         1  11 1       1235788999999887765 444 5


Q ss_pred             EEEEECCCceeEeecCC-----CCCEEEEEeCCCCCEEEEeeCC----CcEEEEECCCcceeEEEeecccCeEEEEcCCC
Q 008467          299 ARIWSTNGDLKCTLSKH-----KGPIFSLKWNKKGDYLLTGSCD----KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN  369 (564)
Q Consensus       299 i~vw~~~~~~~~~~~~h-----~~~V~~l~~~~~~~~l~s~s~D----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  369 (564)
                      +.+++........+...     ...+..+.+.|+|+..++...+    +.-.+|.+..++....+.. ......+.|..+
T Consensus        80 l~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d  158 (295)
T d2ghsa1          80 LFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPD  158 (295)
T ss_dssp             EEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTT
T ss_pred             cEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCC
Confidence            77888764433333211     1246788899999876654332    3455666666655443322 223345556543


Q ss_pred             --ceEEEEeCCCeEEEEEcCCCc------e--eeEecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeeccc
Q 008467          370 --VSFATSSTDNMIYVCKIGENR------P--IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE  439 (564)
Q Consensus       370 --~~~~~~~~d~~i~~~~~~~~~------~--~~~~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~  439 (564)
                        ..+++.+..+.|+.+++....      .  ...+.+-.+....++++.+|++.++.-..+.|..||. .++.+..+..
T Consensus       159 ~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~l  237 (295)
T d2ghsa1         159 GTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEV  237 (295)
T ss_dssp             SCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEEC
T ss_pred             CceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecC
Confidence              356677788899998875321      1  1122344556788999999998888778889999995 5677777776


Q ss_pred             ccccEEEEEEc
Q 008467          440 HSKEIYTIRWS  450 (564)
Q Consensus       440 ~~~~i~~i~~~  450 (564)
                      ....+++++|-
T Consensus       238 P~~~~T~~~FG  248 (295)
T d2ghsa1         238 PGKQTTCPAFI  248 (295)
T ss_dssp             SCSBEEEEEEE
T ss_pred             CCCceEEEEEe
Confidence            66678999985

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.77  E-value=0.00072  Score=61.02  Aligned_cols=211  Identities=11%  Similarity=0.077  Sum_probs=100.2

Q ss_pred             CCceeEccCCccceEEEEECCCCCEEEEEEC-CC-----cEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeE
Q 008467          206 NSDVTILEGHTSEVCACAWSPAGSLLASGSG-DS-----TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVT  279 (564)
Q Consensus       206 ~~~~~~l~~h~~~V~~~~~sp~~~~lasgs~-D~-----~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~  279 (564)
                      ......|..+...+...+|||||+.||..+. ++     .+.+++..++....           +...............
T Consensus        30 ~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~-----------lt~~~~~~~~~~~~~~   98 (281)
T d1k32a2          30 SGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR-----------ITYFSGKSTGRRMFTD   98 (281)
T ss_dssp             TCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE-----------CCCCCEEEETTEECSE
T ss_pred             CCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE-----------eeecCCCccCcccccc
Confidence            3344556667777889999999998886532 22     25555554442110           0000000011122356


Q ss_pred             EEEECCCCCEEEEEeCC------CeEEEEECCCceeEeecCCCCCEEEEEeCCCCCE-EEEeeCCC-----------cEE
Q 008467          280 TLDWNGEGTLLATGSYD------GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDY-LLTGSCDK-----------TAI  341 (564)
Q Consensus       280 ~l~~s~~g~~l~sg~~d------g~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~D~-----------~v~  341 (564)
                      ...|+|+|+.|+.....      ..+...+..+......  +......+ |.+++.. ++....+.           ...
T Consensus        99 ~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (281)
T d1k32a2          99 VAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL--NLGPATHI-LFADGRRVIGRNTFELPHWKGYRGGTRGKI  175 (281)
T ss_dssp             EEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC--CSCSCSEE-EEETTEEEEEESCSCCTTSTTCCSTTCCEE
T ss_pred             ccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEe--cCCcccee-eecCCCeEEEeeccccceeeeeccCCccee
Confidence            78899999998876442      1233444443333222  22222223 3334433 33322221           111


Q ss_pred             EEECCCcceeEEEeecccCeEEEEcCCCceEEEEeC--CCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEeC
Q 008467          342 VWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSST--DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD  419 (564)
Q Consensus       342 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s~  419 (564)
                      .+......... ............+..+..+.....  ...|+++++......+........  ...|+|||+.|+-. .
T Consensus       176 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~~~~--~~~~SpDG~~I~f~-~  251 (281)
T d1k32a2         176 WIEVNSGAFKK-IVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYY--PRHLNTDGRRILFS-K  251 (281)
T ss_dssp             EEEEETTEEEE-EECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSC--EEEEEESSSCEEEE-E
T ss_pred             eeeccccceee-ccCCccccceeeeeccccceecccccccceEEEeCCCCceEEeecCCCcc--cccCcCCCCEEEEE-e
Confidence            11111111111 111111222223334433333332  345777787665543322222222  34689999987754 4


Q ss_pred             CCcEEEEeCCCCeee
Q 008467          420 DVTAKIWNMKQDKYV  434 (564)
Q Consensus       420 dg~i~iwd~~~~~~~  434 (564)
                      ++.|.++|+.+++..
T Consensus       252 ~~~l~~~d~~~g~~~  266 (281)
T d1k32a2         252 GGSIYIFNPDTEKIE  266 (281)
T ss_dssp             TTEEEEECTTTCCEE
T ss_pred             CCEEEEEECCCCCEE
Confidence            678999998877643

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.66  E-value=0.0064  Score=61.12  Aligned_cols=81  Identities=14%  Similarity=0.255  Sum_probs=59.3

Q ss_pred             CeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEE--EEEEccCCC-EE
Q 008467          472 STVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIF--EVCWNKEGD-KI  548 (564)
Q Consensus       472 g~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~--~~~w~~~g~-~l  548 (564)
                      |.|.-||+.+|+.+.+.... .+...-..+-.|.++++|+.||.++.||.++|+.+..+....++.  -+.|..+|+ +|
T Consensus       457 G~l~AiD~~tGk~~W~~~~~-~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv  535 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV  535 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             ccEEEeCCCCCceEeeecCC-CCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            46888999999999887533 222222233467788889999999999999999999998765543  367778997 55


Q ss_pred             EEEEc
Q 008467          549 AACFA  553 (564)
Q Consensus       549 a~~~~  553 (564)
                      ++...
T Consensus       536 ~v~~G  540 (573)
T d1kb0a2         536 SVAVG  540 (573)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            55544

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.58  E-value=0.022  Score=50.59  Aligned_cols=207  Identities=14%  Similarity=0.014  Sum_probs=128.6

Q ss_pred             CCCCCEEEEEeCCCCCEEEEe-eCCCcEEEEECCCcceeEEEeec--ccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCc
Q 008467          314 KHKGPIFSLKWNKKGDYLLTG-SCDKTAIVWDVKTEEWKQQFEFH--SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR  390 (564)
Q Consensus       314 ~h~~~V~~l~~~~~~~~l~s~-s~D~~v~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  390 (564)
                      .+...+.+|+|.+..+.|+-. ..++.|+..++............  ....+.++|..+..+.+....+.|.++++....
T Consensus        33 ~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~  112 (263)
T d1npea_          33 IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ  112 (263)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCce
Confidence            344457889999888777654 45577888888765544333222  223467899999888888888999999987655


Q ss_pred             eeeEecCCCcceEEEEECCCCCEEEEEeC-CCcEEEE--eCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEE
Q 008467          391 PIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAKIW--NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAS  467 (564)
Q Consensus       391 ~~~~~~~h~~~i~~v~~~~~~~~las~s~-dg~i~iw--d~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s  467 (564)
                      ....+...-.....++++|...++..... .+..+||  ++............-.....+++.+.+.        .+..+
T Consensus       113 ~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~--------~lYw~  184 (263)
T d1npea_         113 RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSS--------QLCWV  184 (263)
T ss_dssp             CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTT--------EEEEE
T ss_pred             EEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCc--------EEEEE
Confidence            43333333456889999997776654432 2333454  4544332222222223456777766542        23344


Q ss_pred             EeCCCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCeEEEEEe
Q 008467          468 ASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASG-SLDKSMHIWSLKEGKIVKTYT  531 (564)
Q Consensus       468 ~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasg-s~dg~i~iw~~~~~~~~~~~~  531 (564)
                      -...+.|...|+........+.+...| .+|++.  +.+|... ...+.|...+..+|+.+..+.
T Consensus       185 d~~~~~I~~~~~~g~~~~~v~~~~~~P-~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~  246 (263)
T d1npea_         185 DAGTHRAECLNPAQPGRRKVLEGLQYP-FAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (263)
T ss_dssp             ETTTTEEEEEETTEEEEEEEEECCCSE-EEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             eCCCCEEEEEECCCCCeEEEECCCCCc-EEEEEE--CCEEEEEECCCCEEEEEECCCCccceEEC
Confidence            456788988888744433334443333 577775  4455444 466889999999888777663

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.55  E-value=0.017  Score=57.81  Aligned_cols=82  Identities=15%  Similarity=0.240  Sum_probs=58.6

Q ss_pred             CCeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEE--EEEEccCCC-E
Q 008467          471 DSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIF--EVCWNKEGD-K  547 (564)
Q Consensus       471 dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~--~~~w~~~g~-~  547 (564)
                      .|.|.-+|+.+|+.+.+...- .+..+-..+-.|.++++|+.||.++.+|.++|+.+..+.....+.  -+.|..||+ +
T Consensus       443 ~G~l~AiD~~TG~~~W~~~~~-~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqY  521 (571)
T d2ad6a1         443 MGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQY  521 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             cccEEEeccCCCceeeEcCCC-CCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEE
Confidence            368999999999998876421 222211122246677789999999999999999999998765554  377778996 6


Q ss_pred             EEEEEc
Q 008467          548 IAACFA  553 (564)
Q Consensus       548 la~~~~  553 (564)
                      +|+...
T Consensus       522 i~v~~g  527 (571)
T d2ad6a1         522 IGSMYG  527 (571)
T ss_dssp             EEEEEC
T ss_pred             EEEEec
Confidence            655443

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.47  E-value=0.018  Score=57.56  Aligned_cols=81  Identities=17%  Similarity=0.289  Sum_probs=58.9

Q ss_pred             CeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEE--EEEEccCCC-EE
Q 008467          472 STVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIF--EVCWNKEGD-KI  548 (564)
Q Consensus       472 g~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~--~~~w~~~g~-~l  548 (564)
                      |.|.-||+.+|+.+..... ..+..+-.++-.|.++++|+.||.++.+|..+|+.+..+....++.  -+++..+|+ +|
T Consensus       438 G~l~A~D~~tGk~~W~~~~-~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv  516 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPY-PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYV  516 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             cceEEEeCCCCeEeeeccC-CCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            5788899999999887642 2232222233356788889999999999999999999998765443  367778896 66


Q ss_pred             EEEEc
Q 008467          549 AACFA  553 (564)
Q Consensus       549 a~~~~  553 (564)
                      ++...
T Consensus       517 ~v~aG  521 (560)
T d1kv9a2         517 AIMAG  521 (560)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            65543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.46  E-value=0.023  Score=53.54  Aligned_cols=119  Identities=16%  Similarity=0.231  Sum_probs=72.7

Q ss_pred             EEEEECCCCCEEEEEECCC-----------cEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467          220 CACAWSPAGSLLASGSGDS-----------TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  288 (564)
Q Consensus       220 ~~~~~sp~~~~lasgs~D~-----------~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  288 (564)
                      ...+...+|++++.|+.+.           .+.+||..+++....      ...  .      ..+.......++.++|.
T Consensus        23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~------~~~--~------~~~~~~~~~~~~~~~g~   88 (387)
T d1k3ia3          23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDR------TVT--V------TKHDMFCPGISMDGNGQ   88 (387)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCC------EEE--E------CSCCCSSCEEEECTTSC
T ss_pred             EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeec------CCC--C------CCcccceeEEEEecCCc
Confidence            4445566889888888431           367899887653210      000  0      01111123457889999


Q ss_pred             EEEEEeCC-CeEEEEECCCceeEeecCCC--CCEEEEEeCCCCCEEEEeeCC------CcEEEEECCCcceeE
Q 008467          289 LLATGSYD-GQARIWSTNGDLKCTLSKHK--GPIFSLKWNKKGDYLLTGSCD------KTAIVWDVKTEEWKQ  352 (564)
Q Consensus       289 ~l~sg~~d-g~i~vw~~~~~~~~~~~~h~--~~V~~l~~~~~~~~l~s~s~D------~~v~iwd~~~~~~~~  352 (564)
                      +++.|+.+ ..+.+||.....-.......  ..-.+....++|+.++.|+.+      ..+.+||+.+.+|..
T Consensus        89 i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~  161 (387)
T d1k3ia3          89 IVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS  161 (387)
T ss_dssp             EEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEE
T ss_pred             EEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceee
Confidence            99998766 58999997654333222111  111345567789988888753      368999999988754

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.21  E-value=0.13  Score=51.24  Aligned_cols=80  Identities=15%  Similarity=0.329  Sum_probs=59.0

Q ss_pred             CeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEE--EEEEccCCC-EE
Q 008467          472 STVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIF--EVCWNKEGD-KI  548 (564)
Q Consensus       472 g~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~--~~~w~~~g~-~l  548 (564)
                      |.|.-||+.+|+.+.... +..++.+-.++-.|.+++.|+.||.++.+|.++|+.+..+....++.  -+.|..+|+ +|
T Consensus       453 G~l~A~D~~TG~~~W~~~-~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYv  531 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYV  531 (596)
T ss_dssp             EEEEEECTTTCCEEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             ceEEEEeCCCCceecccC-CCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEE
Confidence            678899999999988764 22233332333457788889999999999999999999998765543  367778996 56


Q ss_pred             EEEE
Q 008467          549 AACF  552 (564)
Q Consensus       549 a~~~  552 (564)
                      |+..
T Consensus       532 av~~  535 (596)
T d1w6sa_         532 AIYY  535 (596)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5443

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.076  Score=47.01  Aligned_cols=225  Identities=12%  Similarity=0.061  Sum_probs=134.1

Q ss_pred             eEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEee-CCCcEEEEECCCcc---eeEEE-e--ecccCeEEEEcCCCc
Q 008467          298 QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDVKTEE---WKQQF-E--FHSGPTLDVDWRNNV  370 (564)
Q Consensus       298 ~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~D~~v~iwd~~~~~---~~~~~-~--~~~~~~~~~~~~~~~  370 (564)
                      .|+-.+.++.....+......+.++.|++..+.|+-.. ..+.|.--++....   ..... .  ......++++|....
T Consensus        11 ~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~   90 (266)
T d1ijqa1          11 EVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN   90 (266)
T ss_dssp             SEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE
T ss_pred             eEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccce
Confidence            57777777655444444556678999998888776554 45666666654321   11111 1  122235788999999


Q ss_pred             eEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEEEEe--CCCcEEEEeCCCCeeeeecccccccEEEEE
Q 008467          371 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS--DDVTAKIWNMKQDKYVHDLREHSKEIYTIR  448 (564)
Q Consensus       371 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~las~s--~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~  448 (564)
                      .+.+....+.|.++++........+.........++++|...+|.-..  ..+.|.-.++............-.....++
T Consensus        91 lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~  170 (266)
T d1ijqa1          91 IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGIT  170 (266)
T ss_dssp             EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEE
T ss_pred             EEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEE
Confidence            999988899999999987665555555556788899998665554433  334566666655443322222334457788


Q ss_pred             EccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEE--eCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE
Q 008467          449 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL--NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI  526 (564)
Q Consensus       449 ~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~  526 (564)
                      +.+.+.        .+..+-...+.|...++.........  ........+|++. .+..+.+-..++.|...+..+|+.
T Consensus       171 iD~~~~--------~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~~  241 (266)
T d1ijqa1         171 LDLLSG--------RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD  241 (266)
T ss_dssp             EETTTT--------EEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCC
T ss_pred             eecccc--------EEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCCCcc
Confidence            876543        23444456778888888643322222  2222335667765 233334444667888888777765


Q ss_pred             EEEEe
Q 008467          527 VKTYT  531 (564)
Q Consensus       527 ~~~~~  531 (564)
                      +....
T Consensus       242 ~~~~~  246 (266)
T d1ijqa1         242 VNLLA  246 (266)
T ss_dssp             CEEEE
T ss_pred             eEEEE
Confidence            54443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.12  E-value=0.012  Score=55.07  Aligned_cols=147  Identities=12%  Similarity=0.054  Sum_probs=92.6

Q ss_pred             CCCCEEEEEe-CCCcEEEEeCCCCeeeeecc-cccccEEEEEEccCCCCCCCCCCcEEEEEEeCC---------------
Q 008467          409 PTGSLLASCS-DDVTAKIWNMKQDKYVHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFD---------------  471 (564)
Q Consensus       409 ~~~~~las~s-~dg~i~iwd~~~~~~~~~~~-~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d---------------  471 (564)
                      +||++|+... .+.+|-+-|+++.++...+. .....+..++..+.+.      .. +++.++.+               
T Consensus        97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~------T~-YV~~~~e~~vP~pndg~~l~d~~  169 (459)
T d1fwxa2          97 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPR------SN-YVFCNGEDETPLVNDGTNMEDVA  169 (459)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSB------CS-EEEEEECSCEESSCSSSSTTCGG
T ss_pred             cceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCC------eE-EEEccCccccccCCCCccccchh
Confidence            3788876665 57889999999888754332 2234456666555432      12 44444442               


Q ss_pred             ---CeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCC---------------cEEEEeC------------
Q 008467          472 ---STVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK---------------SMHIWSL------------  521 (564)
Q Consensus       472 ---g~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg---------------~i~iw~~------------  521 (564)
                         +.+.++|..+.+..+.+.-. .....+.++|||+|+++.+.+.               .+.+++.            
T Consensus       170 ~y~~~~t~ID~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~  248 (459)
T d1fwxa2         170 NYVNVFTAVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY  248 (459)
T ss_dssp             -EEEEEEEEETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred             hcceEEEEEecCCceEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCc
Confidence               23678899988887766532 3456789999999999877541               2333332            


Q ss_pred             -----------CCC---eEEEEEecCCCEEEEEEccCCCEEEEEE-cCCcEEEEEee
Q 008467          522 -----------KEG---KIVKTYTGNGGIFEVCWNKEGDKIAACF-ANHTVCVLDFR  563 (564)
Q Consensus       522 -----------~~~---~~~~~~~~~~~i~~~~w~~~g~~la~~~-~~~~v~v~~~~  563 (564)
                                 ++.   ..++..........+..+|||+++.++. .+.+|.|+|++
T Consensus       249 ~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~  305 (459)
T d1fwxa2         249 QELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVT  305 (459)
T ss_dssp             EEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGG
T ss_pred             EEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEeh
Confidence                       211   1222233333455789999999888774 47799999986

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.03  E-value=0.042  Score=51.37  Aligned_cols=182  Identities=9%  Similarity=0.071  Sum_probs=105.7

Q ss_pred             eEEEEeCCCeEEEEEcCCCceeeEecC-CCcceEEEEEC--CCCCEEEEEeCCC------------------cEEEEeCC
Q 008467          371 SFATSSTDNMIYVCKIGENRPIKTFAG-HQGEVNCVKWD--PTGSLLASCSDDV------------------TAKIWNMK  429 (564)
Q Consensus       371 ~~~~~~~d~~i~~~~~~~~~~~~~~~~-h~~~i~~v~~~--~~~~~las~s~dg------------------~i~iwd~~  429 (564)
                      .|+....+.+|.+.++...+..+...- ....+..++..  |...+++.++.+.                  .+.++|..
T Consensus       102 lFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~  181 (459)
T d1fwxa2         102 LFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDAD  181 (459)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETT
T ss_pred             EEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEecC
Confidence            356666777888888887776443322 12234445554  4556677666532                  25667877


Q ss_pred             CCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC-------------------------------------C
Q 008467          430 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-------------------------------------S  472 (564)
Q Consensus       430 ~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d-------------------------------------g  472 (564)
                      +.+....+.. .+....+.++|+|.        ..++++...                                     +
T Consensus       182 tm~V~~QV~V-~g~ld~~~~s~dGK--------~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ein  252 (459)
T d1fwxa2         182 KWEVAWQVLV-SGNLDNCDADYEGK--------WAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN  252 (459)
T ss_dssp             TTEEEEEEEE-SSCCCCEEECSSSS--------EEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred             CceEEEEeee-CCChhccccCCCCC--------EEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeC
Confidence            7766544432 22334566677664        233333111                                     1


Q ss_pred             eEEEEeCCCC---eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCC------------eEEEEEecCCCE
Q 008467          473 TVKLWDVELG---KLLYSLNGHREPVYSLAFSPTGEYLASGS-LDKSMHIWSLKEG------------KIVKTYTGNGGI  536 (564)
Q Consensus       473 ~i~iwd~~~~---~~~~~~~~h~~~i~~~~~spdg~~lasgs-~dg~i~iw~~~~~------------~~~~~~~~~~~i  536 (564)
                      .+.+-|.+..   ..+..+.-. .....+.++|||+++++++ .+.++.|+|+++-            .++......-+.
T Consensus       253 gV~VVD~~~~~~~~v~~yIPVp-KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgP  331 (459)
T d1fwxa2         253 GVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGP  331 (459)
T ss_dssp             TEEEEECSGG--CSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCE
T ss_pred             CceeecccccCCcceeEEEecC-CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCc
Confidence            1233343321   111112111 1235689999999987655 6899999998631            112222223356


Q ss_pred             EEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467          537 FEVCWNKEGDKIAACFANHTVCVLDF  562 (564)
Q Consensus       537 ~~~~w~~~g~~la~~~~~~~v~v~~~  562 (564)
                      ...+|+.+|+..-+.+-|+.|+-||+
T Consensus       332 Lht~fd~~g~aytslfids~v~kw~~  357 (459)
T d1fwxa2         332 LHTAFDGRGNAYTSLFLDSQVVKWNI  357 (459)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEEEH
T ss_pred             cccccCCCceEEEEeeccceEEEEec
Confidence            88999999987778889999999986

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.03  E-value=0.2  Score=49.89  Aligned_cols=80  Identities=19%  Similarity=0.461  Sum_probs=60.1

Q ss_pred             CeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCEE--EEEEccCCC-EE
Q 008467          472 STVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIF--EVCWNKEGD-KI  548 (564)
Q Consensus       472 g~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~~~~i~--~~~w~~~g~-~l  548 (564)
                      |.|.-+|+.+|+.+.....+ .++..-..+-.|..+++|+.||.++.+|.++|+.+..++...++.  -+++..+|+ ++
T Consensus       466 G~l~AiD~~TG~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv  544 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCC-CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            67888999999999887643 333332344567788889999999999999999999998655442  377888996 56


Q ss_pred             EEEE
Q 008467          549 AACF  552 (564)
Q Consensus       549 a~~~  552 (564)
                      |+..
T Consensus       545 ~i~a  548 (582)
T d1flga_         545 GVTV  548 (582)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.97  E-value=0.11  Score=45.92  Aligned_cols=190  Identities=13%  Similarity=0.039  Sum_probs=115.4

Q ss_pred             EEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecCCCcceEEEEECCCCCEEE-EEeCCCcEEEEeCCCCeeeeecccc
Q 008467          362 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVTAKIWNMKQDKYVHDLREH  440 (564)
Q Consensus       362 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~~~la-s~s~dg~i~iwd~~~~~~~~~~~~~  440 (564)
                      +++++..+..|.+...++.|+..++........+......+.+++++.-+..|. +-...+.|.+.++........+...
T Consensus        41 ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~  120 (263)
T d1npea_          41 LAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTG  120 (263)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS
T ss_pred             EEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEeccc
Confidence            566777888888888889999888876655444444445678899987665554 5556789999998765543323333


Q ss_pred             cccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEE--eCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEE-eCCCcEE
Q 008467          441 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW--DVELGKLLYSLNGHREPVYSLAFSPTGEYLASG-SLDKSMH  517 (564)
Q Consensus       441 ~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iw--d~~~~~~~~~~~~h~~~i~~~~~spdg~~lasg-s~dg~i~  517 (564)
                      ......++..|...        .++.+-...+..+||  ++............-.....|++.+.++.|..+ ...+.|.
T Consensus       121 l~~p~~l~vdp~~g--------~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~  192 (263)
T d1npea_         121 LVNPRGIVTDPVRG--------NLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAE  192 (263)
T ss_dssp             CSSEEEEEEETTTT--------EEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             ccCCcEEEEecccC--------cEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEE
Confidence            34567888877543        233332222233344  444222222222223456899999888777555 4567899


Q ss_pred             EEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEE-EcCCcEEEEE
Q 008467          518 IWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAAC-FANHTVCVLD  561 (564)
Q Consensus       518 iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~-~~~~~v~v~~  561 (564)
                      ..++........+.+....++|+..  +.+|-.. ..++.|..+|
T Consensus       193 ~~~~~g~~~~~v~~~~~~P~~lav~--~~~lYwtd~~~~~I~~~~  235 (263)
T d1npea_         193 CLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMD  235 (263)
T ss_dssp             EEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred             EEECCCCCeEEEECCCCCcEEEEEE--CCEEEEEECCCCEEEEEE
Confidence            9998765544444444456778775  4445444 3455665554

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.84  E-value=0.16  Score=50.42  Aligned_cols=230  Identities=13%  Similarity=0.110  Sum_probs=130.4

Q ss_pred             CCEEEEeeCCCcEEEEECCCcceeEEEeecc---cCeEE--EEcCCCceEEEEe-----CCCeEEEEEcCCCceeeEecC
Q 008467          328 GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS---GPTLD--VDWRNNVSFATSS-----TDNMIYVCKIGENRPIKTFAG  397 (564)
Q Consensus       328 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~-----~d~~i~~~~~~~~~~~~~~~~  397 (564)
                      +..++.++.|+.+.--|.++++....+....   .....  -....+..++..+     ..+.|+-+|..+++.+-.+..
T Consensus       115 ~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t  194 (571)
T d2ad6a1         115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA  194 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             CCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEEec
Confidence            3567888999999999999998766554321   10000  0011233333332     367788888888776544321


Q ss_pred             C-------------------------------------Ccce-EEEEECCCCCEEEEEeC----------------CCcE
Q 008467          398 H-------------------------------------QGEV-NCVKWDPTGSLLASCSD----------------DVTA  423 (564)
Q Consensus       398 h-------------------------------------~~~i-~~v~~~~~~~~las~s~----------------dg~i  423 (564)
                      .                                     .+.+ ...++++...++..+..                ...+
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~sv  274 (571)
T d2ad6a1         195 TGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTI  274 (571)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEE
T ss_pred             cCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccce
Confidence            1                                     0111 23455666666655544                2345


Q ss_pred             EEEeCCCCeeeeecccccccEEE---------EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCC--
Q 008467          424 KIWNMKQDKYVHDLREHSKEIYT---------IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR--  492 (564)
Q Consensus       424 ~iwd~~~~~~~~~~~~~~~~i~~---------i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~--  492 (564)
                      .-.|.++++.+-.++.....+..         .....++      .....++.++.+|.+.++|..+|+.+.......  
T Consensus       275 vAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g------~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~  348 (571)
T d2ad6a1         275 WGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNG------KMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAV  348 (571)
T ss_dssp             EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETT------EEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTC
T ss_pred             eeeeccchhheecccccCccccccccccccceeeeeccC------ccccceeeccccceEEEEecCCCcEeeeeccCCcc
Confidence            56677888776555432221111         1111111      112357788899999999999999875432100  


Q ss_pred             -----------CCE--------------------------EEEEEcCCCCEEEEEeCC----------------------
Q 008467          493 -----------EPV--------------------------YSLAFSPTGEYLASGSLD----------------------  513 (564)
Q Consensus       493 -----------~~i--------------------------~~~~~spdg~~lasgs~d----------------------  513 (564)
                                 .++                          ...+|+|+...+.....+                      
T Consensus       349 ~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (571)
T d2ad6a1         349 NVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGAT  428 (571)
T ss_dssp             CSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEE
T ss_pred             cccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccc
Confidence                       000                          125677777666543322                      


Q ss_pred             ---------------CcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          514 ---------------KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       514 ---------------g~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                                     |.|.-+|+.+|+++..+.......+-.....|..+.+|..|+.++-||.+
T Consensus       429 ~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~  493 (571)
T d2ad6a1         429 LAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNK  493 (571)
T ss_dssp             EEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETT
T ss_pred             eeeccccCCcccCCcccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECC
Confidence                           46888899999988777543322221223356677778888888777753

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.74  E-value=0.13  Score=51.36  Aligned_cols=231  Identities=13%  Similarity=0.080  Sum_probs=131.6

Q ss_pred             CCEEEEeeCCCcEEEEECCCcceeEEEeecc---cCeEE--EEcCCCceEEEEe-----CCCeEEEEEcCCCceeeEecC
Q 008467          328 GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS---GPTLD--VDWRNNVSFATSS-----TDNMIYVCKIGENRPIKTFAG  397 (564)
Q Consensus       328 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~-----~d~~i~~~~~~~~~~~~~~~~  397 (564)
                      ..+++.++.|+.|.-.|.++++....+....   .....  -....+..++..+     ..+.|+-+|..+++.+-.+..
T Consensus       121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t  200 (596)
T d1w6sa_         121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA  200 (596)
T ss_dssp             CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             ceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeec
Confidence            3478899999999999999999887664321   10000  0011233333222     347888888888876644321


Q ss_pred             CC-------------------------------------c-ceEEEEECCCCCEEEEEeCC----------------CcE
Q 008467          398 HQ-------------------------------------G-EVNCVKWDPTGSLLASCSDD----------------VTA  423 (564)
Q Consensus       398 h~-------------------------------------~-~i~~v~~~~~~~~las~s~d----------------g~i  423 (564)
                      ..                                     . .-..+++++...++..+..+                ..|
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~si  280 (596)
T d1w6sa_         201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTI  280 (596)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred             cCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccc
Confidence            10                                     0 11234556666666555332                235


Q ss_pred             EEEeCCCCeeeeecccccccEE---------EEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCC--
Q 008467          424 KIWNMKQDKYVHDLREHSKEIY---------TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR--  492 (564)
Q Consensus       424 ~iwd~~~~~~~~~~~~~~~~i~---------~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~--  492 (564)
                      .--|.++++.+-.++.....+.         -+.. +..    +.....+++.+..+|.+.++|..+|+.+.......  
T Consensus       281 vAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~-~~~----~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~  355 (596)
T d1w6sa_         281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQ-KDK----DGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTV  355 (596)
T ss_dssp             EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEE-ECT----TSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTC
T ss_pred             cccccccccccccccceeccccCCccccceeeeec-ccc----ccccccceeccccccceeeecCCCCceeeeccccccc
Confidence            6678888877655442211111         0110 110    01123467889999999999999999875432100  


Q ss_pred             -----------CCE--------------------------EEEEEcCCCCEEEEEeC-----------------------
Q 008467          493 -----------EPV--------------------------YSLAFSPTGEYLASGSL-----------------------  512 (564)
Q Consensus       493 -----------~~i--------------------------~~~~~spdg~~lasgs~-----------------------  512 (564)
                                 .++                          ..++++|+..++.....                       
T Consensus       356 ~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~  435 (596)
T d1w6sa_         356 NVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGAT  435 (596)
T ss_dssp             CSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEE
T ss_pred             cccccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEecccccccccccccccccccccccccc
Confidence                       000                          12456666555443211                       


Q ss_pred             ----------------CCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          513 ----------------DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       513 ----------------dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                                      -|.|.-||..+|+++........+..-..+..|..+.+|..||.++-||.+
T Consensus       436 ~~~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~  502 (596)
T d1w6sa_         436 LNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSD  502 (596)
T ss_dssp             EEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETT
T ss_pred             cccccCcccCcccCCCcceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECC
Confidence                            156888899999888776544333322234567888888889998888754

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.55  E-value=0.34  Score=45.98  Aligned_cols=72  Identities=17%  Similarity=0.255  Sum_probs=44.0

Q ss_pred             CCCCEEEEEEcCCCCEEEEE-eCCC--cEEEEeCCCCeEEEEEec-CCCEEEEEEccCCCEEEEEEcC----CcEEEEEe
Q 008467          491 HREPVYSLAFSPTGEYLASG-SLDK--SMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFAN----HTVCVLDF  562 (564)
Q Consensus       491 h~~~i~~~~~spdg~~lasg-s~dg--~i~iw~~~~~~~~~~~~~-~~~i~~~~w~~~g~~la~~~~~----~~v~v~~~  562 (564)
                      +...+..-.++..+.+|+.. -.++  .|.+++..+++....... .+.+..+..+++.+.+...+.+    .++.-+|+
T Consensus       333 ~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl  412 (430)
T d1qfma1         333 HEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDL  412 (430)
T ss_dssp             CSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEET
T ss_pred             cCcceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEEC
Confidence            44445544555555666654 3454  689999998876655433 3446667777777777766554    44555554

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.26  Score=43.36  Aligned_cols=215  Identities=11%  Similarity=0.009  Sum_probs=117.8

Q ss_pred             CcEEEEECCCcceeEEEeecccCe--EEEEcCCCceEEEEeCCCeEEEEEcCCCc----eeeEecCCCcceEEEEECCCC
Q 008467          338 KTAIVWDVKTEEWKQQFEFHSGPT--LDVDWRNNVSFATSSTDNMIYVCKIGENR----PIKTFAGHQGEVNCVKWDPTG  411 (564)
Q Consensus       338 ~~v~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~i~~~~~~~~~----~~~~~~~h~~~i~~v~~~~~~  411 (564)
                      ..|+..++.+........ ....+  +++++..+..|.+-...+.|+..++....    ...........+.++++++.+
T Consensus        10 ~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~   88 (266)
T d1ijqa1          10 HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH   88 (266)
T ss_dssp             SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred             CeEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeecc
Confidence            357777776655433322 22233  34455666677776777778777664321    112223333456678888765


Q ss_pred             CEE-EEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeC
Q 008467          412 SLL-ASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG  490 (564)
Q Consensus       412 ~~l-as~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  490 (564)
                      ..| .+-...+.|.+.++........+.........++..|...       .++..-.+..+.|.-.++...........
T Consensus        89 ~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g-------~ly~~~~~~~~~I~r~~~dGs~~~~l~~~  161 (266)
T d1ijqa1          89 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHG-------FMYWTDWGTPAKIKKGGLNGVDIYSLVTE  161 (266)
T ss_dssp             TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTT-------EEEEEECSSSCEEEEEETTSCCEEEEECS
T ss_pred             ceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccC-------eEEEeccCCCcceeEeccCCCceeccccc
Confidence            554 4555677899999887665444444445567788777432       12222223345566666653322222222


Q ss_pred             CCCCEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCeEEEEEecC---CCEEEEEEccCCCEEEEEEcCCcEEEEE
Q 008467          491 HREPVYSLAFSPTGEYLASG-SLDKSMHIWSLKEGKIVKTYTGN---GGIFEVCWNKEGDKIAACFANHTVCVLD  561 (564)
Q Consensus       491 h~~~i~~~~~spdg~~lasg-s~dg~i~iw~~~~~~~~~~~~~~---~~i~~~~w~~~g~~la~~~~~~~v~v~~  561 (564)
                      .-...+.+++.+.+..|..+ +..+.|...++............   ....+|+.. .+....+-..++.|..+|
T Consensus       162 ~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~  235 (266)
T d1ijqa1         162 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSAN  235 (266)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred             ccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEE
Confidence            33456899999988776655 55678888888654433333222   235667665 233333334455554443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.19  E-value=0.019  Score=53.22  Aligned_cols=160  Identities=12%  Similarity=0.137  Sum_probs=85.5

Q ss_pred             EEEECCCCCEEEEEeC------------CCcEEEEeCCCCeee-eecccccccEEEEEEccCCCC-CCCCCCcEEEEEEe
Q 008467          404 CVKWDPTGSLLASCSD------------DVTAKIWNMKQDKYV-HDLREHSKEIYTIRWSPTGSG-TNNPNQQLILASAS  469 (564)
Q Consensus       404 ~v~~~~~~~~las~s~------------dg~i~iwd~~~~~~~-~~~~~~~~~i~~i~~~p~~~~-~~~~~~~~~l~s~s  469 (564)
                      .+...|+|..+++++.            .|.|.++|+++.... ..+...........|.|.|-. ....++...|++..
T Consensus        39 Di~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvn  118 (340)
T d1v04a_          39 DLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVN  118 (340)
T ss_dssp             EEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEE
T ss_pred             eEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEe
Confidence            4667788877766542            378888888764321 111110000000011121100 00112234555554


Q ss_pred             ---CCCeEEEEeCCCC--eEEE--EEeC-CCCCEEEEEEcCCCCEEEEEe--C-C------------CcEEEEeCCCCeE
Q 008467          470 ---FDSTVKLWDVELG--KLLY--SLNG-HREPVYSLAFSPTGEYLASGS--L-D------------KSMHIWSLKEGKI  526 (564)
Q Consensus       470 ---~dg~i~iwd~~~~--~~~~--~~~~-h~~~i~~~~~spdg~~lasgs--~-d------------g~i~iw~~~~~~~  526 (564)
                         ...+|.+|++...  +..+  ++.. .....++|++..+|.+++|=.  . +            +...+|....++.
T Consensus       119 H~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~  198 (340)
T d1v04a_         119 HPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV  198 (340)
T ss_dssp             CSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCE
T ss_pred             ccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCce
Confidence               3467888876432  3322  2221 124578999999999999831  1 1            2234444444443


Q ss_pred             EEEEecCCCEEEEEEccCCCEEEEE-EcCCcEEEEEee
Q 008467          527 VKTYTGNGGIFEVCWNKEGDKIAAC-FANHTVCVLDFR  563 (564)
Q Consensus       527 ~~~~~~~~~i~~~~w~~~g~~la~~-~~~~~v~v~~~~  563 (564)
                      .....+-...+.++++||++.|.++ +..+.|.+|+++
T Consensus       199 ~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~  236 (340)
T d1v04a_         199 RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKH  236 (340)
T ss_dssp             EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             EEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeC
Confidence            3333444567899999999987766 456788888764

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.09  E-value=0.52  Score=46.39  Aligned_cols=230  Identities=14%  Similarity=0.114  Sum_probs=129.1

Q ss_pred             CCEEEEeeCCCcEEEEECCCcceeEEEeecccCe-EEEE----cCCCceEEEE-----eCCCeEEEEEcCCCceeeEecC
Q 008467          328 GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT-LDVD----WRNNVSFATS-----STDNMIYVCKIGENRPIKTFAG  397 (564)
Q Consensus       328 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~-----~~d~~i~~~~~~~~~~~~~~~~  397 (564)
                      +..++.+..|+.+.-.|..+++.+..+....... ..+.    ...+..++..     ...+.|+-+|..+++.+-.+..
T Consensus       117 ~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t  196 (560)
T d1kv9a2         117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT  196 (560)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             CCeEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeee
Confidence            4568888999999999999998877654322110 0000    0112222211     1235677778777766544421


Q ss_pred             C------------------------------Ccce-EEEEECCCCCEEEEEeC-------------------CCcEEEEe
Q 008467          398 H------------------------------QGEV-NCVKWDPTGSLLASCSD-------------------DVTAKIWN  427 (564)
Q Consensus       398 h------------------------------~~~i-~~v~~~~~~~~las~s~-------------------dg~i~iwd  427 (564)
                      -                              .+.+ ..+++++...++..+..                   ...|.-.|
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld  276 (560)
T d1kv9a2         197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR  276 (560)
T ss_dssp             SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred             ccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEec
Confidence            0                              0111 12456666666554322                   12355557


Q ss_pred             CCCCeeeeecccccccEEE---------EEEccCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCC------
Q 008467          428 MKQDKYVHDLREHSKEIYT---------IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR------  492 (564)
Q Consensus       428 ~~~~~~~~~~~~~~~~i~~---------i~~~p~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~------  492 (564)
                      .++++.+-.++.....+..         +....++      ....+++.++.+|.+.++|..+|+.+.....-.      
T Consensus       277 ~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g------~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~  350 (560)
T d1kv9a2         277 PDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDG------KPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEK  350 (560)
T ss_dssp             TTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETT------EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEE
T ss_pred             CCccceeEEEeccccccccccccceeeeeeeecCC------ceeeeeeecCccceEEEEecCCCcccccccccccccccc
Confidence            7777765444322211110         1111111      123467788999999999999999876542110      


Q ss_pred             ------------------CC------------EEEEEEcCCCCEEEEEeC------------------------------
Q 008467          493 ------------------EP------------VYSLAFSPTGEYLASGSL------------------------------  512 (564)
Q Consensus       493 ------------------~~------------i~~~~~spdg~~lasgs~------------------------------  512 (564)
                                        ..            -...+++|+..++.....                              
T Consensus       351 ~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (560)
T d1kv9a2         351 VDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATD  430 (560)
T ss_dssp             ECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCC
T ss_pred             cChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccC
Confidence                              00            014567787766664332                              


Q ss_pred             ------CCcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEEee
Q 008467          513 ------DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       513 ------dg~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~~  563 (564)
                            .|.|.-||+.+|+++..+........-.....|.++.+|..||.++-||.+
T Consensus       431 ~p~~~~~G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~  487 (560)
T d1kv9a2         431 VPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSAD  487 (560)
T ss_dssp             CCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred             CCCcccccceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECC
Confidence                  256889999999998887654333322334567777788888888877753

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=95.93  E-value=0.63  Score=42.90  Aligned_cols=118  Identities=12%  Similarity=0.153  Sum_probs=70.3

Q ss_pred             eEEEEECCCCCEEEEEECC-CcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC-
Q 008467          219 VCACAWSPAGSLLASGSGD-STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD-  296 (564)
Q Consensus       219 V~~~~~sp~~~~lasgs~D-~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~d-  296 (564)
                      ..++++.++|++++.|+.+ ..+.+||..+.....              ..  .......-.+++..+||++++.|+.+ 
T Consensus        78 ~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~--------------~~--~~~~~r~~~~~~~~~dG~v~v~GG~~~  141 (387)
T d1k3ia3          78 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIP--------------GP--DMQVARGYQSSATMSDGRVFTIGGSWS  141 (387)
T ss_dssp             SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEE--------------CC--CCSSCCSSCEEEECTTSCEEEECCCCC
T ss_pred             eeEEEEecCCcEEEeecCCCcceeEecCccCcccc--------------cc--cccccccccceeeecCCceeeeccccc
Confidence            4467889999999998765 589999976543210              00  00111223456677899999998754 


Q ss_pred             -----CeEEEEECCCceeEeecC----------CCC-----CEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeE
Q 008467          297 -----GQARIWSTNGDLKCTLSK----------HKG-----PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ  352 (564)
Q Consensus       297 -----g~i~vw~~~~~~~~~~~~----------h~~-----~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~  352 (564)
                           ..+.+||.....-..+..          +..     .-..+.-.++|+.+..+..++.+.++|..+..+..
T Consensus       142 ~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~  217 (387)
T d1k3ia3         142 GGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKS  217 (387)
T ss_dssp             SSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEE
T ss_pred             cccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEee
Confidence                 368889876543322211          100     00112223567777777777778888877766544

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.56  E-value=1  Score=42.51  Aligned_cols=245  Identities=14%  Similarity=0.145  Sum_probs=121.4

Q ss_pred             CCccceEEEEECCCCCEEEEEE-----CCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 008467          214 GHTSEVCACAWSPAGSLLASGS-----GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT  288 (564)
Q Consensus       214 ~h~~~V~~~~~sp~~~~lasgs-----~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~  288 (564)
                      ++.-.+..+++||+++++|.+-     .-..+++.|+.+++...         ..+..         .....++|.+|++
T Consensus       122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~---------~~i~~---------~~~~~~~W~~D~~  183 (430)
T d1qfma1         122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP---------DVLER---------VKFSCMAWTHDGK  183 (430)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE---------EEEEE---------ECSCCEEECTTSS
T ss_pred             cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecc---------ccccc---------ccccceEEcCCCC
Confidence            4444455678999999887432     22479999998875211         01111         0124578999999


Q ss_pred             EEEEEeCC----------------CeEEEEECCCc---eeEeecCC--CCCEEEEEeCCCCCEEEEeeC---CCcEEEE-
Q 008467          289 LLATGSYD----------------GQARIWSTNGD---LKCTLSKH--KGPIFSLKWNKKGDYLLTGSC---DKTAIVW-  343 (564)
Q Consensus       289 ~l~sg~~d----------------g~i~vw~~~~~---~~~~~~~h--~~~V~~l~~~~~~~~l~s~s~---D~~v~iw-  343 (564)
                      .|+-...+                ..|..|.....   -...+...  ..-+..+..++++++++....   +....+| 
T Consensus       184 ~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~  263 (430)
T d1qfma1         184 GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWY  263 (430)
T ss_dssp             EEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEE
T ss_pred             EEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEE
Confidence            88765433                24666665432   12233333  234667788999998764332   3344455 


Q ss_pred             -ECCCcc--------eeEEEeecccCeEEEEcCCCceEEEEe---CCCeEEEEEcCCCce--eeE-ecCCCcceEEEEEC
Q 008467          344 -DVKTEE--------WKQQFEFHSGPTLDVDWRNNVSFATSS---TDNMIYVCKIGENRP--IKT-FAGHQGEVNCVKWD  408 (564)
Q Consensus       344 -d~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~i~~~~~~~~~~--~~~-~~~h~~~i~~v~~~  408 (564)
                       |+....        +...+........-+...++..++...   .++.+...++.....  -.. +..+...+..-.+.
T Consensus       264 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~  343 (430)
T d1qfma1         264 CDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVAC  343 (430)
T ss_dssp             EEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEE
T ss_pred             eeCCCcccccccccceeEeecccccceEEEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEE
Confidence             443211        111111111122223333333344332   245666666654322  122 33444444333333


Q ss_pred             CCCCEEE-EEeCCC--cEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeC--CCeEEEEeCCCCe
Q 008467          409 PTGSLLA-SCSDDV--TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF--DSTVKLWDVELGK  483 (564)
Q Consensus       409 ~~~~~la-s~s~dg--~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~--dg~i~iwd~~~~~  483 (564)
                      ..+.+|+ +-..++  .|++++..++.....+....+.+..+...+..       ....+...|.  =.++.-+|+.+++
T Consensus       344 ~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~-------~~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         344 VRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKD-------TEIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             ETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTC-------SEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCCCC-------CEEEEEEcCCCCCCeEEEEECCCCC
Confidence            3344554 445565  47788888776544433333334333222211       1233333332  2567777877664

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.71  E-value=1.2  Score=38.96  Aligned_cols=226  Identities=12%  Similarity=0.179  Sum_probs=139.3

Q ss_pred             eCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcC-CCceeeEecCCCc--
Q 008467          324 WNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIG-ENRPIKTFAGHQG--  400 (564)
Q Consensus       324 ~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~~~~~~~~h~~--  400 (564)
                      .+|..+.|+-=+ ..++.++|+++.+.++.+.+.. ++.=-.|.++..++.. .+..||.|++. ...|.+.|..|..  
T Consensus        70 MhP~~~IiALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis~~~L~lV-T~taVYHW~~~g~s~P~k~fdR~~~L~  146 (327)
T d1utca2          70 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALV-TDNAVYHWSMEGESQPVKMFDRHSSLA  146 (327)
T ss_dssp             ECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEESSSSEEEEE-CSSEEEEEESSSSCCCEEEEECCGGGT
T ss_pred             cCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC-CcEEEEecCCCEEEEE-cCCceEEEcccCCCCchhhhhhccccc
Confidence            467766655443 5689999999999888877765 3444567777666544 45679999994 3468888887754  


Q ss_pred             --ceEEEEECCCCCEEEEEe---C----CCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEe--
Q 008467          401 --EVNCVKWDPTGSLLASCS---D----DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASAS--  469 (564)
Q Consensus       401 --~i~~v~~~~~~~~las~s---~----dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s--  469 (564)
                        .|-.-..+++.++++..+   .    .|.+.+|...... -+.+.+|.+....+..  +|.    +....+++-+.  
T Consensus       147 ~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~--~g~----~~~~~lf~fa~r~  219 (327)
T d1utca2         147 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKM--EGN----AEESTLFCFAVRG  219 (327)
T ss_dssp             TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEEEEEEECC--TTC----SSCEEEEEEEEEE
T ss_pred             CceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc-CccccceeeeeEEEEc--CCC----CCCceEEEEEECC
Confidence              466677789999866432   2    3567888876543 3456677654444432  221    11122333332  


Q ss_pred             -CCCeEEEEeCCCC---e-----EEEEE----eCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec-CCC
Q 008467          470 -FDSTVKLWDVELG---K-----LLYSL----NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGG  535 (564)
Q Consensus       470 -~dg~i~iwd~~~~---~-----~~~~~----~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~~~~-~~~  535 (564)
                       ..+.++|.++...   .     ....+    ..-.+-.-++..|+.-..+..-+.-|.|++||+.+|.++..-+- ...
T Consensus       220 ~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~  299 (327)
T d1utca2         220 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGET  299 (327)
T ss_dssp             TTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             CCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCc
Confidence             2257888887542   1     11111    01123345677888777888889999999999999998766543 334


Q ss_pred             EEEEEEccCCCEEEEEEcCCcEEE
Q 008467          536 IFEVCWNKEGDKIAACFANHTVCV  559 (564)
Q Consensus       536 i~~~~w~~~g~~la~~~~~~~v~v  559 (564)
                      |+--|=+.+..=+.+--.+|.|.-
T Consensus       300 iF~~a~~~~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         300 IFVTAPHEATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             EEEEEEETTTTEEEEEETTSEEEE
T ss_pred             eEEeccCCCCceEEEECCCCeEEE
Confidence            554444444333333335666543

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.24  E-value=1.3  Score=40.77  Aligned_cols=138  Identities=10%  Similarity=0.082  Sum_probs=86.9

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCC---------CeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCC
Q 008467          401 EVNCVKWDPTGSLLASCSDDVTAKIWNMKQ---------DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD  471 (564)
Q Consensus       401 ~i~~v~~~~~~~~las~s~dg~i~iwd~~~---------~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~d  471 (564)
                      ..+-+++++...+++.|+.++ ++|-.++.         .......+..-..|..++|+-+           .|+. ..+
T Consensus        38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d-----------~l~v-~~~  104 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD-----------QVLV-STR  104 (381)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT-----------EEEE-EES
T ss_pred             ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC-----------EEEE-EeC
Confidence            456788888888888888885 56665311         0000001111234777888643           2333 345


Q ss_pred             CeEEEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE------EecCCCEEEEEEccCC
Q 008467          472 STVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKT------YTGNGGIFEVCWNKEG  545 (564)
Q Consensus       472 g~i~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~~~~~~~~~------~~~~~~i~~~~w~~~g  545 (564)
                      +.+..++...-........-..++..+.++|.  .++....+|.+.++++.+++....      +.-.+....++|++.|
T Consensus       105 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kg  182 (381)
T d1xipa_         105 NALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRS  182 (381)
T ss_dssp             SEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSC
T ss_pred             CCEEEEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCc
Confidence            67888887654434444334567888998885  566677789999999998864332      2224567888999888


Q ss_pred             CEEEEEEc
Q 008467          546 DKIAACFA  553 (564)
Q Consensus       546 ~~la~~~~  553 (564)
                      +.++++.+
T Consensus       183 kq~v~~~g  190 (381)
T d1xipa_         183 FQSFAWRN  190 (381)
T ss_dssp             EEEEEEET
T ss_pred             EEEEEeCC
Confidence            88887743

>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.14  E-value=0.0044  Score=42.17  Aligned_cols=30  Identities=30%  Similarity=0.431  Sum_probs=28.4

Q ss_pred             cchhhhhHHHHHhcCCceeeeccccccCCc
Q 008467            7 EELNYLVFRYLQESGLLHSAFVLGYEAGIN   36 (564)
Q Consensus         7 ~evn~Li~ryl~E~g~~~sa~~~~~E~~~~   36 (564)
                      +|+|.=|..||+.+||..+|-+|++|..++
T Consensus         8 eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~   37 (76)
T d1uuja_           8 DELNRAIADYLRSNGYEEAYSVFKKEAELD   37 (76)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHCCcHHHHHHHHHHHCCC
Confidence            799999999999999999999999999775

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=94.08  E-value=3  Score=40.77  Aligned_cols=101  Identities=11%  Similarity=0.050  Sum_probs=67.6

Q ss_pred             EEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCC-----------------------------------EEEEEEcCCCCEE
Q 008467          463 LILASASFDSTVKLWDVELGKLLYSLNGHREP-----------------------------------VYSLAFSPTGEYL  507 (564)
Q Consensus       463 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~-----------------------------------i~~~~~spdg~~l  507 (564)
                      .+++.++.+|.+.++|..+|+.+.........                                   -..++|+|+..++
T Consensus       328 ~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~  407 (573)
T d1kb0a2         328 KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLV  407 (573)
T ss_dssp             EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEE
T ss_pred             eeeeeccccceeEEeccccccccccccccccccccccccccceeeeeeccccccceEEeecccCCccccccccCCCcceE
Confidence            36778889999999999999988754321000                                   0124677776665


Q ss_pred             EEEeCC-------------------------------------------CcEEEEeCCCCeEEEEEecCCCEEEEEEccC
Q 008467          508 ASGSLD-------------------------------------------KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKE  544 (564)
Q Consensus       508 asgs~d-------------------------------------------g~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~  544 (564)
                      .....+                                           |.|.-||+.+|+++..+........=.....
T Consensus       408 yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~p~~gg~lsta  487 (573)
T d1kb0a2         408 YLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTA  487 (573)
T ss_dssp             EEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEET
T ss_pred             EeeccccceeeecccccccccCCCCccccccccccccccccCCCCCCCcccEEEeCCCCCceEeeecCCCCCCCceEEEc
Confidence            542221                                           3578899999999888765433222223447


Q ss_pred             CCEEEEEEcCCcEEEEEee
Q 008467          545 GDKIAACFANHTVCVLDFR  563 (564)
Q Consensus       545 g~~la~~~~~~~v~v~~~~  563 (564)
                      |..|.+|..|+.++.||.+
T Consensus       488 gglVF~G~~dg~l~A~Da~  506 (573)
T d1kb0a2         488 GNVVFQGTADGRLVAYHAA  506 (573)
T ss_dssp             TTEEEEECTTSEEEEEETT
T ss_pred             CCEEEEECCCCeEEEEECC
Confidence            8888888889998888753

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.63  E-value=2.6  Score=39.71  Aligned_cols=55  Identities=7%  Similarity=0.131  Sum_probs=38.7

Q ss_pred             CcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeee--eecc------cccccEEEEEEccCC
Q 008467          399 QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV--HDLR------EHSKEIYTIRWSPTG  453 (564)
Q Consensus       399 ~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~--~~~~------~~~~~i~~i~~~p~~  453 (564)
                      -...++|+|.|+|+++++--..|.|++++..++...  ..+.      .-......|+++|+-
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf   88 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDF   88 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCC
Confidence            345679999999999987766899999987765432  2221      112456789999863

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.32  E-value=5.5  Score=38.81  Aligned_cols=49  Identities=12%  Similarity=0.082  Sum_probs=36.2

Q ss_pred             CcEEEEeCCCCeEEEEEecCCCEEEEEEccCCCEEEEEEcCCcEEEEEe
Q 008467          514 KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDF  562 (564)
Q Consensus       514 g~i~iw~~~~~~~~~~~~~~~~i~~~~w~~~g~~la~~~~~~~v~v~~~  562 (564)
                      |.|.-+|+.+|+++..+.....+..-.....|..+.+|..||.++-||.
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da  514 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDA  514 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEET
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEEC
Confidence            6788899999999888765544433233467788888888998888775

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=92.22  E-value=3.9  Score=36.81  Aligned_cols=60  Identities=15%  Similarity=0.335  Sum_probs=41.2

Q ss_pred             CCEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCe-E--EEEEecCCCEEEEEEcc-CCCEEEEEE
Q 008467          493 EPVYSLAFSPTGEYLASG-SLDKSMHIWSLKEGK-I--VKTYTGNGGIFEVCWNK-EGDKIAACF  552 (564)
Q Consensus       493 ~~i~~~~~spdg~~lasg-s~dg~i~iw~~~~~~-~--~~~~~~~~~i~~~~w~~-~g~~la~~~  552 (564)
                      ...+.|+++||+++|..+ +..++|++|++.... +  .....-.+.+-.+.+++ +|...+++.
T Consensus       206 ~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~~  270 (340)
T d1v04a_         206 DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCH  270 (340)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred             CccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEEC
Confidence            457999999999877554 567889999986433 2  22333345567899986 566666664

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.05  E-value=3.5  Score=36.00  Aligned_cols=229  Identities=13%  Similarity=0.160  Sum_probs=124.6

Q ss_pred             ECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCc-ceeEEEeeccc--
Q 008467          283 WNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE-EWKQQFEFHSG--  359 (564)
Q Consensus       283 ~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~~--  359 (564)
                      .+|..+.||.-+ ...+.|++.+.+.+..-.....+|.--+|-.+...-+.  .+..|.-|++... ...+.|..|..  
T Consensus        70 MhP~~~IiALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~lV--T~taVYHW~~~g~s~P~k~fdR~~~L~  146 (327)
T d1utca2          70 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALV--TDNAVYHWSMEGESQPVKMFDRHSSLA  146 (327)
T ss_dssp             ECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEESSSSEEEEE--CSSEEEEEESSSSCCCEEEEECCGGGT
T ss_pred             cCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEecCCCEEEEE--cCCceEEEcccCCCCchhhhhhccccc
Confidence            456667777666 46899999987655444445567877889766544332  2457999998543 34445554432  


Q ss_pred             --CeEEEEcCCCce-E-EE--EeCC----CeEEEEEcCCCceeeEecCCCcceEEEEECCCC---CEEEEEe---CCCcE
Q 008467          360 --PTLDVDWRNNVS-F-AT--SSTD----NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG---SLLASCS---DDVTA  423 (564)
Q Consensus       360 --~~~~~~~~~~~~-~-~~--~~~d----~~i~~~~~~~~~~~~~~~~h~~~i~~v~~~~~~---~~las~s---~dg~i  423 (564)
                        .++...-..+.. + ++  +..+    |.+.+|....+ .-+.+.||.+....+...-+.   ++++-+.   ..+++
T Consensus       147 ~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kL  225 (327)
T d1utca2         147 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKL  225 (327)
T ss_dssp             TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEE
T ss_pred             CceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEE
Confidence              233322222221 1 11  1222    45567776543 446678887666555443221   2333332   23567


Q ss_pred             EEEeCCCCeeeeecccccccEEEEEEccCCCCCCC-----CCCcEEEEEEeCCCeEEEEeCCCCeEEEEEeCCCCCEEEE
Q 008467          424 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNN-----PNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSL  498 (564)
Q Consensus       424 ~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~-----~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~~  498 (564)
                      +|-++.+...-  -.........+-|.|+....+.     ....-++..-+.-|.|.++|++++.+++.-+-...+|...
T Consensus       226 hIiEig~~~~g--~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~  303 (327)
T d1utca2         226 HIIEVGTPPTG--NQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVT  303 (327)
T ss_dssp             EEEECSCCCTT--CCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             EEEEcCCCccC--CCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEe
Confidence            77776542100  0011122233444443221110     0011145556688999999999999998877667777766


Q ss_pred             EEcCCCCEEEEEeCCCcEE
Q 008467          499 AFSPTGEYLASGSLDKSMH  517 (564)
Q Consensus       499 ~~spdg~~lasgs~dg~i~  517 (564)
                      +-+.+..-+++-..+|.|.
T Consensus       304 a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         304 APHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             EEETTTTEEEEEETTSEEE
T ss_pred             ccCCCCceEEEECCCCeEE
Confidence            6555544555555666553

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=90.02  E-value=6.4  Score=35.37  Aligned_cols=198  Identities=18%  Similarity=0.274  Sum_probs=98.9

Q ss_pred             CCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeC--CC--eEEE
Q 008467          226 PAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY--DG--QARI  301 (564)
Q Consensus       226 p~~~~lasgs~D~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~g~~l~sg~~--dg--~i~v  301 (564)
                      |+.++++.....+-+.+||+. |+.......+.++-..++             ..+........++.++.  ++  .|.+
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~Gr~NNVDvr-------------~~~~l~~~~~di~vasnR~~~~~~l~~  103 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYHTGKLNNVDIR-------------YDFPLNGKKVDIAAASNRSEGKNTIEI  103 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECCSSCEEEEEEE-------------EEEEETTEEEEEEEEEECCTTTCEEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecccCCcCccccc-------------cccccCCcceEEEEEeCCcCcceeEEE
Confidence            455677777777779999985 443322222222222221             11222222333455542  22  5777


Q ss_pred             EECCC--ceeEeecCC-------CCCEEEEEe--CCC-CC-EEEEeeCCCcEEEEECC---Ccc----eeEEEeecccCe
Q 008467          302 WSTNG--DLKCTLSKH-------KGPIFSLKW--NKK-GD-YLLTGSCDKTAIVWDVK---TEE----WKQQFEFHSGPT  361 (564)
Q Consensus       302 w~~~~--~~~~~~~~h-------~~~V~~l~~--~~~-~~-~l~s~s~D~~v~iwd~~---~~~----~~~~~~~~~~~~  361 (564)
                      |..++  .....+...       ...++++++  ++. |. +++....+|.+..|.+.   .+.    .++.|......-
T Consensus       104 ~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~E  183 (353)
T d1h6la_         104 YAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTE  183 (353)
T ss_dssp             EEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEE
T ss_pred             EEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccc
Confidence            76542  222222211       124677777  654 43 56677788999888763   222    223333322211


Q ss_pred             EEEEcCCCceEEEEeCCCeEEEEEcCCC-----ceeeEecC--CCcceEEEEEC--CC--CCEEEEEeCCCcEEEEeCCC
Q 008467          362 LDVDWRNNVSFATSSTDNMIYVCKIGEN-----RPIKTFAG--HQGEVNCVKWD--PT--GSLLASCSDDVTAKIWNMKQ  430 (564)
Q Consensus       362 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~-----~~~~~~~~--h~~~i~~v~~~--~~--~~~las~s~dg~i~iwd~~~  430 (564)
                      -++.-..+..+..+-.+..++.++....     ..+....+  ..+.+..|+.-  .+  |-+|||.-.+.+..|||..+
T Consensus       184 GCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~  263 (353)
T d1h6la_         184 GMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQG  263 (353)
T ss_dssp             EEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred             eEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCC
Confidence            1222223345555556666776665422     11212222  24567777643  23  34566666688999999765


Q ss_pred             C-eeeeec
Q 008467          431 D-KYVHDL  437 (564)
Q Consensus       431 ~-~~~~~~  437 (564)
                      . ..+..|
T Consensus       264 ~~~~~g~F  271 (353)
T d1h6la_         264 QNKYVADF  271 (353)
T ss_dssp             TCCEEEEE
T ss_pred             CccccceE
Confidence            3 444443

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=89.77  E-value=3.9  Score=35.34  Aligned_cols=184  Identities=11%  Similarity=-0.034  Sum_probs=82.8

Q ss_pred             CCCCEEEEEeCCCCCEEEEeeCCCcEEEEECCCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeE
Q 008467          315 HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKT  394 (564)
Q Consensus       315 h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~  394 (564)
                      ....|..|+--  ..+.+.-. ||.|..|-......+..-......+..+.--....++.  .|+.++.|..........
T Consensus        24 ~~~~i~~va~G--~~h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G~~~~~al--~dg~v~~wG~~~~gq~~~   98 (273)
T d1jtdb_          24 AQSGVDAIAGG--YFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLAL--KDGEVIAWGGNEDGQTTV   98 (273)
T ss_dssp             GSSSEEEEEEC--SSEEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEECSSEEEEE--ETTEEEEEECCTTSTTCC
T ss_pred             CCCCcEEEEcc--CCEEEEEE-CCEEEEEeCCCCCceeeeecccccceEEecCCCceeee--eeeeeeccCCCcceeecc
Confidence            34567777653  23444445 89999997544321111111112233333333333333  478888887643222111


Q ss_pred             ecCCCcceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEeCCCeE
Q 008467          395 FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTV  474 (564)
Q Consensus       395 ~~~h~~~i~~v~~~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s~dg~i  474 (564)
                      ...-...+..++.....  .+ .-.|+.+..|.................|..+.-...           .++ ...++.+
T Consensus        99 ~~~~~~~~~~i~~~~~~--~~-~~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-----------~~~-~~~~g~~  163 (273)
T d1jtdb_          99 PAEARSGVDAIAAGAWA--SY-ALKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY-----------TAL-AVKNGGV  163 (273)
T ss_dssp             CGGGGSSCCEEEEETTE--EE-EEETTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS-----------EEE-EEETTEE
T ss_pred             ccccccceeEEeeeccc--cc-ccccccceecccCCCCceeeeccCCceEEEEeccce-----------eee-eecccce
Confidence            11112233444433222  22 224888999975433221111112233444432211           122 2347888


Q ss_pred             EEEeCCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 008467          475 KLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL  521 (564)
Q Consensus       475 ~iwd~~~~~~~~~~~~h~~~i~~~~~spdg~~lasgs~dg~i~iw~~  521 (564)
                      ..|-......+.........|..|+....  +.+.-. ||.|+.|=.
T Consensus       164 ~~~G~~~~g~~~~~~~~~~~v~~Is~G~~--h~~~l~-dG~v~~WG~  207 (273)
T d1jtdb_         164 IAWGDNYFGQTTVPAEAQSGVDDVAGGIF--HSLALK-DGKVIAWGD  207 (273)
T ss_dssp             EEEECCTTSTTSCCGGGSSSEEEEEECSS--EEEEEE-TTEEEEEEC
T ss_pred             eEeecccCCcccccccccCCccceeccce--eeEEEe-cCcEEEcCC
Confidence            88865432111111123346777765433  222223 788888854

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=87.45  E-value=9.6  Score=34.16  Aligned_cols=148  Identities=16%  Similarity=0.295  Sum_probs=87.4

Q ss_pred             CCCCCEEEEEeCCCcEEEEeCCCCeeeeecccccccEEEEEEccCCCCCCCCCCcEEEEEEe-C-C--CeEEEEeCC-CC
Q 008467          408 DPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASAS-F-D--STVKLWDVE-LG  482 (564)
Q Consensus       408 ~~~~~~las~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~p~~~~~~~~~~~~~l~s~s-~-d--g~i~iwd~~-~~  482 (564)
                      +|...+++.....+-+.+||+. ++.+..+.  .+.+..|.....-..  . ....-++.++ . +  .+|.+|.+. ..
T Consensus        37 ~p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l--~-~~~~di~vasnR~~~~~~l~~~~id~~~  110 (353)
T d1h6la_          37 NPQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPL--N-GKKVDIAAASNRSEGKNTIEIYAIDGKN  110 (353)
T ss_dssp             CGGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEE--T-TEEEEEEEEEECCTTTCEEEEEEEETTT
T ss_pred             CcCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCcccccccccc--C-CcceEEEEEeCCcCcceeEEEEEecCcc
Confidence            3456777777777779999986 55555443  244554443211000  0 0011233343 2 2  367788764 22


Q ss_pred             eEEEEEeCCC-------CCEEEEEE--cCC-CC-EEEEEeCCCcEEEEeC---CCC----eEEEEEecCCCEEEEEEccC
Q 008467          483 KLLYSLNGHR-------EPVYSLAF--SPT-GE-YLASGSLDKSMHIWSL---KEG----KIVKTYTGNGGIFEVCWNKE  544 (564)
Q Consensus       483 ~~~~~~~~h~-------~~i~~~~~--spd-g~-~lasgs~dg~i~iw~~---~~~----~~~~~~~~~~~i~~~~w~~~  544 (564)
                      ..+..+....       ..++.+|+  +|. |. ++++...+|.+..|.+   ..+    ++++++.....+-.+.++.+
T Consensus       111 ~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde  190 (353)
T d1h6la_         111 GTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDE  190 (353)
T ss_dssp             TEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETT
T ss_pred             cccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCC
Confidence            3343333211       23667776  665 54 4566677899888876   333    45677777777888999999


Q ss_pred             CCEEEEEEcCCcEEEEE
Q 008467          545 GDKIAACFANHTVCVLD  561 (564)
Q Consensus       545 g~~la~~~~~~~v~v~~  561 (564)
                      ...|.++-.+..+..++
T Consensus       191 ~~~LyisEE~~Giw~~~  207 (353)
T d1h6la_         191 YGSLYIAEEDEAIWKFS  207 (353)
T ss_dssp             TTEEEEEETTTEEEEEE
T ss_pred             CCcEEEecCccceEEEE
Confidence            99999997776554444

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.53  E-value=11  Score=34.06  Aligned_cols=135  Identities=10%  Similarity=0.038  Sum_probs=79.0

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEECC------------CceeEeecCCCCCEEEEEeCCCCCEEEEeeCCCcEEEEEC
Q 008467          278 VTTLDWNGEGTLLATGSYDGQARIWSTN------------GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV  345 (564)
Q Consensus       278 V~~l~~s~~g~~l~sg~~dg~i~vw~~~------------~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~  345 (564)
                      ..-++.++...+++.|+.++ ++|-...            .......  .-..|..++|+.+  .|+. ..++.+..++.
T Consensus        39 ~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~--~ip~v~~vafs~d--~l~v-~~~~~l~~~~~  112 (381)
T d1xipa_          39 LQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK--EIPDVIFVCFHGD--QVLV-STRNALYSLDL  112 (381)
T ss_dssp             CBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE--ECTTEEEEEEETT--EEEE-EESSEEEEEES
T ss_pred             cceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceecc--CCCCeEEEEeeCC--EEEE-EeCCCEEEEEe
Confidence            45677788777888888775 4555421            1111111  1125888999744  4444 34566777776


Q ss_pred             CCcceeEEEeecccCeEEEEcCCCceEEEEeCCCeEEEEEcCCCceeeEecC-----CCcceEEEEECCCCCEEEEEeC
Q 008467          346 KTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG-----HQGEVNCVKWDPTGSLLASCSD  419 (564)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-----h~~~i~~v~~~~~~~~las~s~  419 (564)
                      ..-.-......-..++..+.|.+. .++....++.+.++.+...+......+     -.+.+.|++|++.|+.++++..
T Consensus       113 ~~l~~~~~~~~~~~~~~~~~~~p~-~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g  190 (381)
T d1xipa_         113 EELSEFRTVTSFEKPVFQLKNVNN-TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWRN  190 (381)
T ss_dssp             SSTTCEEEEEECSSCEEEEEECSS-EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEET
T ss_pred             eccccccccccccccccceecCCc-eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeCC
Confidence            553322222223445677777654 466677788888888877653322111     1245778888888887777643

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=82.91  E-value=18  Score=33.48  Aligned_cols=52  Identities=10%  Similarity=0.158  Sum_probs=36.6

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeec---------CCCCCEEEEEeCCC
Q 008467          276 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLS---------KHKGPIFSLKWNKK  327 (564)
Q Consensus       276 ~~V~~l~~s~~g~~l~sg~~dg~i~vw~~~~~~~~~~~---------~h~~~V~~l~~~~~  327 (564)
                      ..-++|+|.|+|++|++--..|.|++++..+.....+.         .-.+....|+++|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            34679999999999887656799999986543322211         12356789999985