Citrus Sinensis ID: 008510

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560---
Protein Sequence
MPGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKDGVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQQIVEFILQNTGQKDFTLNTSFRDPYTGASAYVPGQPSSMSAIPAKPTFKHIPKKGMLIFDAAQFDGILKKIMEFNNALLFDLEKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDISLLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLMLEGLVKKIALDFDVGNIARVAKASKETKIAEVGADIELLAKQS
Secondary Structure (PSIPRED)
ccccEEEEEcccccEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEccccEEEEEcccccEEEEEEcccccEEEEEccccEEEEEcccccccccccccccccccccEEEcccccccEEcccccccccEEcccccccEEEEEEccccEEEEEEEccccEEEccccEEEcccccccccEEEcEEccEEEEEEEcccccEEEEccccccccccccHHHHHHcccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccEEEccccHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHccccccHHHHHHcccHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHcHHHHHHHHHHcccHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccEEEEEccccEEEEEEccccEEEEEEccccEEEEEEEccccEEEEcccccEEEEEEccEEEEEEEccccEEEEEEcccccEEEEccccEEEEEEccccccccHHHHHHHHHHHHHccccHHccccccHHccccHHHHccccccccEEEEEEccccEEEEEEEcccccEEEEEEEEccccccccEEEEcccEEEEEEEEEcccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEcccccEEEEccccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccHHccccHHHHHHHHHHcccHHHHHccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccHcHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mpgvgiisaSHDCTIRLWALTGQVLMEMVGHTAIVYSIdshasglivsgseDRFAKIwkdgvcvqsiehpgcvwdakflengdivtacsdgvtriwtvhsdkvadSLELEAYASELSQYKLCRKkvgglkledlpglealqipgtnagqtkvvregdngvaysWDMKEQKwdklgevvdgpddgmnrpildgiqydyvfdvdigdgeptrklpynrsdnpydaADKWLlkenlpfsyRQQIVEFILQntgqkdftlntsfrdpytgasayvpgqpssmsaipakptfkhipkkgmliFDAAQFDGILKKIMEFNNALLFDLEkknlsmseLETSRVAAVVKILKDtshyhcssfaDVDISLLLKLLktwppamifpvIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKvssnptlpanLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSScysssnknvqLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLMLEGLVKKIALDFDVGNIARVAKASKETKIAEVGADIELLAKQS
Flexible Loop (DISEMBL)
mpgvgiisashDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKDGVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEAlqipgtnagqtkvvrEGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGeptrklpynrsDNPYDAADKWLLKENLPFSYRQQIVEFILQNTGQKDFTLNTSFRDPYTGASAYVPGQPSSMSAIPAKPTFKHIPKKGMLIFDAAQFDGILKKIMEFNNALLFDLEKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDISLLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIaeeesievdSKYRALVAIGTLMLEGLVKKIALDFDVGNIARVAkasketkiaevgadiellakqs
Low Complexity Region (SEG)
MPGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKDGVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQQIVEFILQNTGQKDFTLNTSFRDPYTGASAYVPGQPSSMSAIPAKPTFKHIPKKGMLIFDAAQFDGILKKIMEFNNALLFDLEKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDISLLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVlsaaleiaeeesieVDSKYRALVAIGTLMLEGLVKKIALDFDVGNIARVAKASKETKIAEVGADIELLAKQS
Disordered region (IsUnstruct)
****GIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKDGVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGE****L*Y****NPYDAADKWLLKENLPFSYRQQIVEFILQNTGQKDFTLNTSFRDPYTGASAY***************TFKHIPKKGMLIFDAAQFDGILKKIMEFNNALLFDLEKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDISLLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKK******HVLSAALEIAEEESIEVDSKYRALVAIGTLMLEGLVKKIALDFDVGNIARVAKASKETKIAEVGA*********
Disordered Region (DISOPRED)
MPGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKDGVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASE*********KVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVV***********LDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQQIVEFILQN*****************************************IPKKGMLIFDAAQFDGILKKIMEFNN***************LETSRVAAVVKILKDTSHYHCSSFADVDISLLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLMLEGLVKKIALDFDVGN************I*EVGADIELLAKQ*
Disordered Region (DISEMBL)
MPGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKDGVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQQIVEFILQNTGQKDFTLNTSFRDPYTGASAYVPGQPSSMSAIPAKPTFKHIPKKGMLIFDAAQFDGILKKIMEFNNALLFDLEKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDISLLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLMLEGLVKKIALDFDVGNIARVAKASKETKIAEVGADIELLAKQS
Disordered Region (DISPRO)
*PGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKDGVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQQIVEFILQNTGQK******SFR***T*A*****************PTFKHIPKKGMLIFDAAQFDGILKKIMEFNNALLF***KKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDISLLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLMLEGLVKKIALDFDVGNIARVAKASKETKIAEVGADIELLAKQ*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKDGVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQQIVEFILQNTGQKDFTLNTSFRDPYTGASAYVPGQPSSMSAIPAKPTFKHIPKKGMLIFDAAQFDGILKKIMEFNNALLFDLEKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDISLLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLxxxxxxxxxxxxxxxxxxxxxPTLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLMLEGLVKKIALDFDVGNIARVAKASKETKIAEVGADIELLAKQS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	563	2.2.26 [Sep-21-2011]
P27612	794	Phospholipase A-2-activat	yes	no	0.948	0.672	0.304	9e-72
P54319	795	Phospholipase A-2-activat	yes	no	0.944	0.669	0.304	1e-71
Q9Y263	795	Phospholipase A-2-activat	yes	no	0.934	0.661	0.307	7e-70
Q6GM65	799	Phospholipase A-2-activat	N/A	no	0.960	0.677	0.297	2e-66
O94289	718	Ubiquitin homeostasis pro	yes	no	0.843	0.661	0.325	2e-63
P36037	715	Protein DOA1 OS=Saccharom	yes	no	0.820	0.646	0.309	4e-44
P74442	1191	Uncharacterized WD repeat	N/A	no	0.229	0.108	0.307	3e-09
Q9VZF4	1326	F-box/WD repeat-containin	no	no	0.166	0.070	0.35	1e-07
Q969H0	707	F-box/WD repeat-containin	no	no	0.206	0.164	0.3	3e-07
Q8VBV4	629	F-box/WD repeat-containin	no	no	0.206	0.184	0.3	5e-07

>sp|P27612|PLAP_MOUSE Phospholipase A-2-activating protein OS=Mus musculus GN=Plaa PE=2 SV=4

 Score =  271 bits (693), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 182/598 (30%), Positives = 291/598 (48%), Gaps = 64/598 (10%)

Query: 6   IISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHA-SGLIVSGSEDRFAKIWKDGVCV 64
            +S ++D +IR W +TG+ L    GHT  +YSI     S   V+ +EDR  +IWK G C 
Sbjct: 205 FLSCANDASIRRWQITGECLEVYFGHTNYIYSISVFPNSKDFVTTAEDRSLRIWKHGECA 264

Query: 65  QSIEHPG-CVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCR 123
           Q+I  P   +W    LENGDIV   SDG+ R++T   ++ A + E++A+  ELSQ  +  
Sbjct: 265 QTIRLPAQSIWCCCVLENGDIVVGASDGIIRVFTESEERTASAEEIKAFERELSQATIDS 324

Query: 124 KK--VGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVV--D 179
           K   +G +  E LPG E L  PGT  GQT+++R+G+   AY W + + +W K+G+VV   
Sbjct: 325 KTGDLGDINAEQLPGREHLSEPGTREGQTRLIRDGERVEAYQWSVSDGRWIKIGDVVGSS 384

Query: 180 GPDDGMNRPIL-DGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYR 238
           G +   +  +L +G ++DYVF +D+ +G P+ KLPYN SD+P+  A  +L K +L   + 
Sbjct: 385 GANQQTSGKVLYEGKEFDYVFSIDVNEGGPSYKLPYNVSDDPWLVAYNFLQKNDLNPMFL 444

Query: 239 QQIVEFILQNTGQKDFTL-NTSFRDPYTGASAYVPGQPSSMSAIPAKPTFK--------- 288
            Q+ +FI+ NT  +   L NTSF DP+TG   YVPG     + +     F          
Sbjct: 445 DQVAKFIIDNTKGQTLGLGNTSFSDPFTGGGRYVPGTSGPSNTVQTADPFTGAGRYMPGS 504

Query: 289 -----------------------------HIPKKGMLIFDAAQFDGILKKIMEFNNALLF 319
                                        + PKK  L FD A    IL K+ E N     
Sbjct: 505 AGMDTTMTGVDPFTGNSAYRSAASKTVNIYFPKKEALTFDQANPTQILGKLKELNGTA-- 562

Query: 320 DLEKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDISLLLKLLKTWPPAMIFPVID 379
             E+K L+  +L       + KIL    +          + +L K +  WP  ++FP +D
Sbjct: 563 -PEEKKLTEDDL-----VLLEKILSLICNNSSEKPTAQQLQILWKAIN-WPEDIVFPALD 615

Query: 380 ILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSWY 439
           ILR++I HP+   +       + D     +  + +    PAN L  +R   N F + +  
Sbjct: 616 ILRLSIKHPN---VNENFCNEKGDQFSSHLINLLNPKGKPANQLLALRTFCNCFVSQAGQ 672

Query: 440 SWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIA 499
             +   R  ++       S SNKN+ ++ +TL LNY+V   +  + EG++  LS    I 
Sbjct: 673 KLMMSQRESLMSHAIELKSGSNKNIHIALATLTLNYSVCFHKDHNIEGKAQCLSVISTIL 732

Query: 500 EEESIEVDSKYRALVAIGTLMLEG-----LVKKIALDFDVGNIARVAKASKETKIAEV 552
           E    ++++ +R LVA+GTL+ +      L K + +D  +     V++ +K ++   +
Sbjct: 733 EVVQ-DLEATFRLLVALGTLISDDSNAIQLAKSLGVDSQIKKYVSVSEPAKVSECCRL 789

Involved in the maintenance of ubiquitin levels.
Mus musculus (taxid: 10090)

>sp|P54319|PLAP_RAT Phospholipase A-2-activating protein OS=Rattus norvegicus GN=Plaa PE=2 SV=3

 Score =  271 bits (692), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 183/601 (30%), Positives = 295/601 (49%), Gaps = 69/601 (11%)

Query: 6   IISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGL-IVSGSEDRFAKIWKDGVCV 64
            +S ++D +IR W +TG+ L    GHT  +YSI    +    V+ +EDR  +IWK G C 
Sbjct: 205 FLSCANDASIRRWQITGECLGVYYGHTNYIYSISVFPNCRDFVTTAEDRSLRIWKHGECA 264

Query: 65  QSIEHPG-CVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCR 123
           Q+I  P   +W    L+NGDIV   SDG+ R++T   ++ A + E++A+  ELSQ  +  
Sbjct: 265 QTIRLPAQSIWCCCVLDNGDIVVGASDGIIRVFTEADERTASAEEIKAFERELSQATIDS 324

Query: 124 KK--VGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVV--D 179
           K   +G +  E LPG E L  PGT  GQT+++R+G+   AY W + + +W K+G+VV   
Sbjct: 325 KTGDLGDINAEQLPGREHLNEPGTREGQTRLIRDGERVEAYQWSVSDGRWIKIGDVVGSS 384

Query: 180 GPDDGMNRPIL-DGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYR 238
           G +   +  +L +G ++DYVF +D+ +G P+ KLPYN SD+P+  A  +L K +L   + 
Sbjct: 385 GANQQTSGKVLYEGKEFDYVFSIDVNEGGPSYKLPYNVSDDPWLVAYNFLQKNDLNPMFL 444

Query: 239 QQIVEFILQNTGQKDFTL-NTSFRDPYTGASAYVPGQPSSMSAIPAKPTFK--------- 288
            Q+ +FI+ NT  +   L NTSF DP+TG   YVPG     + +     F          
Sbjct: 445 DQVAKFIIDNTKGQTLGLGNTSFSDPFTGGGRYVPGTSGPSNTVQTADPFTGAGRYMPGS 504

Query: 289 -----------------------------HIPKKGMLIFDAAQFDGILKKIMEFNNALLF 319
                                        + PKK  L FD A    IL K+ E N +   
Sbjct: 505 AGMDTTMAGVDPFTGNSAYRSAASKTVNIYFPKKEALTFDQANPTQILGKLKELNGSAP- 563

Query: 320 DLEKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDISLLLKLL---KTWPPAMIFP 376
             E+K L+  +L       + KIL       C + ++   +  L++L     WP  ++FP
Sbjct: 564 --EEKKLTEDDL-----VLLEKILS----LICGNASEKPTAQQLQVLWKAINWPEDIVFP 612

Query: 377 VIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNS 436
            +DILR++I HP          E + D     +  + +    PAN L  +R   N F + 
Sbjct: 613 ALDILRLSIKHPSVNENFCN--EKEGDQFSSHLINLLNPKGKPANQLLALRTFCNCFVSQ 670

Query: 437 SWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAAL 496
           +    +   R  ++       S SNKN+ ++ +TL LNY+V   +  + EG++  LS   
Sbjct: 671 AGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLTLNYSVCFHKDHNIEGKAQCLSVIS 730

Query: 497 EIAEEESIEVDSKYRALVAIGTLMLEG-----LVKKIALDFDVGNIARVAKASKETKIAE 551
            I E    ++++ +R LVA+GTL+ +      L K + +D  +   A V++ +K ++   
Sbjct: 731 TILEVVQ-DLEATFRLLVALGTLISDDSNAIQLAKSLGVDSQIKKYASVSEPAKVSECCR 789

Query: 552 V 552
           +
Sbjct: 790 L 790

Involved in the maintenance of ubiquitin levels.

Rattus norvegicus (taxid: 10116)

>sp|Q9Y263|PLAP_HUMAN Phospholipase A-2-activating protein OS=Homo sapiens GN=PLAA PE=1 SV=2

 Score =  265 bits (677), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 186/604 (30%), Positives = 292/604 (48%), Gaps = 78/604 (12%)

Query: 6   IISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGL-IVSGSEDRFAKIWKDGVCV 64
            +S ++D +IR W +TG+ L    GHT  +YSI    +    V+ +EDR  +IWK G C 
Sbjct: 205 FLSCANDASIRRWQITGECLEVYYGHTNYIYSISVFPNCRDFVTTAEDRSLRIWKHGECA 264

Query: 65  QSIEHPG-CVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCR 123
           Q+I  P   +W    L+NGDIV   SDG+ R++T   D+ A + E++A+  ELS   +  
Sbjct: 265 QTIRLPAQSIWCCCVLDNGDIVVGASDGIIRVFTESEDRTASAEEIKAFEKELSHATIDS 324

Query: 124 KK--VGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVV--D 179
           K   +G +  E LPG E L  PGT  GQT+++R+G+   AY W + E +W K+G+VV   
Sbjct: 325 KTGDLGDINAEQLPGREHLNEPGTREGQTRLIRDGEKVEAYQWSVSEGRWIKIGDVVGSS 384

Query: 180 GPDDGMNRPIL-DGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYR 238
           G +   +  +L +G ++DYVF +D+ +G P+ KLPYN SD+P+  A  +L K +L   + 
Sbjct: 385 GANQQTSGKVLYEGKEFDYVFSIDVNEGGPSYKLPYNTSDDPWLTAYNFLQKNDLNPMFL 444

Query: 239 QQIVEFILQNT-GQKDFTLNTSFRDPYTGASAYVPGQPSSMSAIPAKPTFK--------- 288
            Q+ +FI+ NT GQ     N SF DP+TG   YVPG   S + +P    F          
Sbjct: 445 DQVAKFIIDNTKGQMLGLGNPSFSDPFTGGGRYVPGSSGSSNTLPTADPFTGAGRYVPGS 504

Query: 289 -----------------------------HIPKKGMLIFDAAQFDGILKKIMEFNNALLF 319
                                        + PKK  + FD A    IL K+ E N     
Sbjct: 505 ASMGTTMAGVDPFTGNSAYRSAASKTMNIYFPKKEAVTFDQANPTQILGKLKELNGTAP- 563

Query: 320 DLEKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDISLLLKLLKTWPPAMIFPVID 379
             E+K L+  +L       + KIL    +          + +L K +   P  ++FP +D
Sbjct: 564 --EEKKLTEDDL-----ILLEKILSLICNSSSEKPTVQQLQILWKAINC-PEDIVFPALD 615

Query: 380 ILRMTILHPDGASLLLKHVENQ--NDVLMEMIEKVSSNPT-LPANLLTGIRAVTNLFKNS 436
           ILR++I HP          E    +  L+ ++     NP   PAN L  +R   N F   
Sbjct: 616 ILRLSIKHPSVNENFCNEKEGAQFSSHLINLL-----NPKGKPANQLLALRTFCNCFVGQ 670

Query: 437 SWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVL---S 493
           +    +   R  ++       S SNKN+ ++ +TL LNY+V   +  + EG++  L   S
Sbjct: 671 AGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLIS 730

Query: 494 AALEIAEEESIEVDSKYRALVAIGTLMLEG-----LVKKIALDFDVGNIARVAKASKETK 548
             LE+ +    ++++ +R LVA+GTL+ +      L K + +D     I + +  S+  K
Sbjct: 731 TILEVVQ----DLEATFRLLVALGTLISDDSNAVQLAKSLGVD---SQIKKYSSVSEPAK 783

Query: 549 IAEV 552
           ++E 
Sbjct: 784 VSEC 787

Involved in the maintenance of ubiquitin levels.

Homo sapiens (taxid: 9606)

>sp|Q6GM65|PLAP_XENLA Phospholipase A-2-activating protein OS=Xenopus laevis GN=plaa PE=2 SV=2

 Score =  254 bits (648), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 178/598 (29%), Positives = 291/598 (48%), Gaps = 57/598 (9%)

Query: 6   IISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGL-IVSGSEDRFAKIWKDGVCV 64
            +S S+D ++R W +TG+ L    GHT  +YS+    +    V+ SEDR  +IW+ G C 
Sbjct: 211 FLSCSNDASVRRWLITGECLQIYYGHTNYIYSVCLFPNSQDFVTTSEDRSIRIWRKGECT 270

Query: 65  QSIEHPG-CVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCR 123
           Q+I  P   VW    L+NGDIV   SDG+ R++T   D++A   E++A+ +ELS+  +  
Sbjct: 271 QTIRLPAQSVWCCCVLDNGDIVVGASDGIIRVFTESPDRIASIEEIQAFENELSKATIDP 330

Query: 124 KK--VGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVD-- 179
           K   +G +K++DLPG + L  PGT  GQT++++E     AY W   E +W K+G+VV   
Sbjct: 331 KTGDLGDIKIDDLPGRDHLNEPGTRDGQTRLIKEDGKVEAYQWSTGEGRWMKIGDVVGSS 390

Query: 180 -GPDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYR 238
                   R + +G +YDYVF +D+ +  P+ KLPYN +++P+  A  +L K +L   + 
Sbjct: 391 GATQQTSGRVLFEGKEYDYVFTIDVNESGPSHKLPYNLTEDPWLVAYNFLQKNDLNPMFL 450

Query: 239 QQIVEFILQNTGQKDFTLNTSFRDPYTGASAYVPGQPSS--------------------- 277
            Q+ +FI+ NT  +  + N  + DP TG   Y+PG  S+                     
Sbjct: 451 DQVAKFIIDNTAGQTPSTNLGYTDPLTGGGRYIPGSSSTDNNGADPFTGGNRYVPGSSLQ 510

Query: 278 --MSAIPAKP-TFK-------------HIPKKGMLIFDAAQFDGILKKIMEFNNALLFDL 321
              SA  A P T K             + PK   + FD A    IL K+ E N +     
Sbjct: 511 SDYSAAAADPFTGKNAYRSSTAPTPNAYFPKTKPVTFDQANPSQILGKLKELNESAP--- 567

Query: 322 EKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDISLLLKLLKTWPPAMIFPVIDIL 381
           E++ L   +L       + K+L    +    +     +  L +++  WP  +IFP +D+L
Sbjct: 568 EERKLPEEDL-----MQLDKLLSVAVNPSGGTVTAQQLDTLWRVVN-WPEDLIFPALDVL 621

Query: 382 RMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSWYSW 441
           R++I +P    +     E +       + ++ S     AN L  +R   N F        
Sbjct: 622 RISIKNPTVNEMFCN--EKEGSQFSSYLLQLMSPSGKQANQLLALRTFCNSFFCDPGSCL 679

Query: 442 LQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAEE 501
           L   R  +L       + +NKN+ ++ +TL+LNYA+ L +  D EG++  LSA   + E 
Sbjct: 680 LMVERDNVLSKVIELKTVNNKNIHIALATLMLNYAICLHKVSDIEGKAQCLSAISSVIEV 739

Query: 502 ESIEVDSKYRALVAIGTLMLEGLVKKIALDFDVGNIARVAKASKETKIAEVGADIELL 559
              ++++ +R LVA+GTL + G    + L   +G  +++ K    T+ A+V     LL
Sbjct: 740 VQ-DLEAIFRLLVALGTL-ISGDTNAMQLAKSLGVDSQIKKYMSVTEPAKVNECCRLL 795

Involved in the maintenance of ubiquitin levels.

Xenopus laevis (taxid: 8355)

>sp|O94289|LUB1_SCHPO Ubiquitin homeostasis protein lub1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lub1 PE=1 SV=2

 Score =  243 bits (621), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 172/529 (32%), Positives = 271/529 (51%), Gaps = 54/529 (10%)

Query: 1   MPGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDS-HASGLIVSGSEDRFAKIWK 59
           +PG G  S S+D  I+LW   G+ L E+ GHT+ VYS+   H   LI S  EDR  +IWK
Sbjct: 190 IPG-GFASCSNDGVIKLWTSDGEFLYELHGHTSFVYSLTYIHNQQLIASCGEDRTIRIWK 248

Query: 60  DGVCVQSIEHPGC-VWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQ 118
              C+Q I  P   VW    L NGD+V   SDG  RI+TV   +VA +  L+ +   +SQ
Sbjct: 249 GKECLQCITLPTTSVWSVSSLPNGDLVCGSSDGFVRIFTVDKVRVAPTEVLKNFEERVSQ 308

Query: 119 YKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVV 178
           + +  ++VG +K   LPGLE L  PG   G   +VR  ++  AY W  KE +W K+G+VV
Sbjct: 309 FAISSQEVGDIKKGSLPGLEILSKPGKADGDVVMVRVNNDVEAYQWSQKENEWKKIGQVV 368

Query: 179 DGPDDGMNRP-ILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSY 237
           D    G NR  + +G +YDYVFDVD+ DG+   KLPYN ++NPY AA+++L    LP SY
Sbjct: 369 DAV--GNNRKQLFEGKEYDYVFDVDVADGQAPLKLPYNATENPYQAANRFLELNQLPLSY 426

Query: 238 RQQIVEFILQNTGQKDFTLNTSFRDPYTGASAYVPGQPS--SMSAIPAKPTFKHIPKKGM 295
             ++V+FI +NT                G S     +P+  S S+   K T   + +   
Sbjct: 427 TDEVVKFIEKNT---------------QGHSLESKKEPNLESQSSNKIKTTIFPVSQ--- 468

Query: 296 LIFDAAQFDGILKKIMEFNNALLFDLEKKNLSMSELETSRVAAVVKILKDTSHYHCSSFA 355
           L+F  A    + +++   NN     L  K++   E   S      K + DT         
Sbjct: 469 LLFSNANVPAMCQRLRSLNNTKSNPLPAKSIDSLERALSS-----KKITDTEKNEL---- 519

Query: 356 DVDISLLLKLLKTWPPAMIFPVIDILRMTILH--PDGASLLLKHVENQNDVLMEMIEKVS 413
              +   L +L +W  A  FP +D LR+  ++   D A + L       +V   +++ V 
Sbjct: 520 ---LETCLSILDSWSLAERFPALDALRLLAINSSSDLAPIFL-------EVFSRVVKSVP 569

Query: 414 SNPTLPA-NLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCY--SSSNKNVQLSYST 470
           S+    + N++  +R ++N+  N +      +  S+++D  +S    +SS K+ +++++T
Sbjct: 570 SSGNFESINVMLALRGLSNVVPNIT----DAEGVSKLMDCLTSTVPQASSAKDFKIAFAT 625

Query: 471 LILNYAVLLIEKKDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTL 519
           L +N ++LLI+   E     +LS      ++ S + ++ YRAL+A+GTL
Sbjct: 626 LAMNLSILLIQLNLENTGIELLSILFSFLDDPSPDNEAFYRALMALGTL 674

Acts as a negative regulator of vacuole-dependent ubiquitin degradation.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P36037|DOA1_YEAST Protein DOA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DOA1 PE=1 SV=1

 Score =  179 bits (455), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 166/537 (30%), Positives = 245/537 (45%), Gaps = 75/537 (13%)

Query: 6   IISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIW--KDGV 62
            IS S+D  I+L  + TG VL    GH + VY I    +G IVS  EDR  +IW  ++G 
Sbjct: 193 FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGS 252

Query: 63  CVQSIEHPG-CVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKL 121
             Q I  P   +W    + NGDI+   SD + RI++    + A   E+   ++++ +  +
Sbjct: 253 LKQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEKSRWASEDEINELSTQVEKSTI 312

Query: 122 CRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGP 181
             K +       L   E LQ PG   GQ  VV+    G   +       W K+G+VV   
Sbjct: 313 SSKTIE-FDESKLSPYEILQSPGRKEGQIVVVK-SPQGTIEAHQFSNSSWKKVGDVVGAG 370

Query: 182 DDGMNRPI-LDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQQ 240
             G ++ I  +G  YDYVFDVDI DG+P  KLP N SDNPY AAD +L +  LP SYR Q
Sbjct: 371 ATGNDKKIEFEGKTYDYVFDVDIEDGKPPLKLPINVSDNPYTAADNFLARYELPMSYRDQ 430

Query: 241 IVEFILQNTGQKDFTLNTSFRDPYTGASAYVPGQPSSMSAI-PAKPT-FKHIPKKGMLIF 298
           +V+FIL+NT                G S   P   +S SA+ P+K +  K +P K  LI 
Sbjct: 431 VVQFILKNT---------------NGISLDQPNDNASSSAVSPSKTSVMKVLPVKQYLIM 475

Query: 299 DAAQFDGILKKIMEFN-NALLFDLEKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADV 357
           +    D I   I++ N N   FD E             +A +   L D          D 
Sbjct: 476 ENYNPDTIFNGIVKINSNEKTFDDE------------ILAQIGGALHDI---------DE 514

Query: 358 DISLLLKLLKT----WPPAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVS 413
              LLL    T    W   +  P  DI+R          L++K +   +D+  + IE+  
Sbjct: 515 SWELLLSFANTIRSNW--EIKTPAYDIVR----------LIVKKLPYSSDI-KDYIEEGL 561

Query: 414 SNPTLPANLLTGIRAVTNLFKNSSW-YSWLQKNRS-----EILDA-FSSCYSSSNKNVQL 466
            N  +   +LT +R + N F N +W    L+ N+      E +D  FS   +  ++N+ +
Sbjct: 562 GNKNITLTMLT-VRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAI 620

Query: 467 SYSTLILNYAVLLIEKKDEEGQSHVLSAALEIA----EEESIEVDSKYRALVAIGTL 519
           + STLI NY+ L+ +   +     +++ A+       EE     ++ YR  VA G L
Sbjct: 621 AVSTLIFNYSALVTKGNSDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNL 677

Participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. May act by preventing the interaction between CDC48 and the E4 enzyme UFD2, leading to prevent multiubiquitination of substrates and subsequent degradation. Essential for maintaining cellular ubiquitin levels.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P74442|Y143_SYNY3 Uncharacterized WD repeat-containing protein slr0143 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0143 PE=4 SV=1

 Score = 63.9 bits (154), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 70/143 (48%), Gaps = 14/143 (9%)

Query: 6   IISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVC 63
           I SAS D T+ LW   G+ L E  GHT  +Y +D   +G +  +  +D+  KIW  DG  
Sbjct: 575 IASASRDGTVHLWTPQGEFLREFTGHTGSIYRVDFSPNGKIFATAGQDQTVKIWDLDGNL 634

Query: 64  VQSIE-HPGCVWDAKFLENGDIVTACS-DGVTRIWTVHSDKVADSLELEAYASELSQY-- 119
           +Q+++ H   V+   F  +G+I+ + S D   R+W   S K    L     + + +Q+  
Sbjct: 635 LQTLKGHQDSVYSVSFSPDGEILASTSRDRTVRLWHWRSGKTLAVLGGHTKSVDDAQFSP 694

Query: 120 ------KLCRKKVGGLKLEDLPG 136
                  +CR   G ++L DL G
Sbjct: 695 DGQTLVSVCRD--GQIRLWDLDG 715

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q9VZF4|FBXW7_DROME F-box/WD repeat-containing protein 7 OS=Drosophila melanogaster GN=ago PE=1 SV=1

 Score = 58.5 bits (140), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 53/100 (53%), Gaps = 6/100 (6%)

Query: 3    GVGIISASHDCTIRLW-ALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK- 59
            G  I+S S D T+++W A+ G+ L  +VGHT  V+S  S  SG +I+SGS DR  K+W  
Sbjct: 1005 GNRIVSGSDDNTLKVWSAVNGKCLRTLVGHTGGVWS--SQMSGNIIISGSTDRTLKVWDM 1062

Query: 60   -DGVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTV 98
              G CV +++          L    +V+   D   R+W +
Sbjct: 1063 DSGACVHTLQGHTSTVRCMHLHGSKVVSGSRDATLRVWDI 1102

Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Probably recognizes and binds to phosphorylated target proteins (By similarity). Involved in the degradation of cyclin E and dm/Myc. Required for endocycles, but not mitosis in follicle cell epithelium.

Drosophila melanogaster (taxid: 7227)

>sp|Q969H0|FBXW7_HUMAN F-box/WD repeat-containing protein 7 OS=Homo sapiens GN=FBXW7 PE=1 SV=1

 Score = 57.4 bits (137), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 4/120 (3%)

Query: 3   GVGIISASHDCTIRLW-ALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIW--K 59
           G  I+S S D T+++W A+TG+ L  +VGHT  V+S       +I+SGS DR  K+W  +
Sbjct: 391 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS-SQMRDNIIISGSTDRTLKVWNAE 449

Query: 60  DGVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQY 119
            G C+ ++           L    +V+   D   R+W + + +    L     A    QY
Sbjct: 450 TGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY 509

Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Probably recognizes and binds to phosphorylated target proteins. Involved in the degradation of cyclin-E, MYC, NOTCH1 released notch intracellular domain (NICD), and probably PSEN1.

Homo sapiens (taxid: 9606)

>sp|Q8VBV4|FBXW7_MOUSE F-box/WD repeat-containing protein 7 OS=Mus musculus GN=Fbxw7 PE=1 SV=1

 Score = 56.6 bits (135), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 4/120 (3%)

Query: 3   GVGIISASHDCTIRLW-ALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIW--K 59
           G  I+S S D T+++W A+TG+ L  +VGHT  V+S       +I+SGS DR  K+W  +
Sbjct: 313 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS-SQMRDNIIISGSTDRTLKVWNAE 371

Query: 60  DGVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQY 119
            G C+ ++           L    +V+   D   R+W + + +    L     A    QY
Sbjct: 372 TGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY 431

Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Probably recognizes and binds to phosphorylated target proteins. Involved in the degradation of cyclin-E, MYC, NOTCH1 released notch intracellular domain (NICD), and probably PSEN1.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	563
356545299	756	PREDICTED: phospholipase A-2-activating	0.998	0.743	0.781	0.0
255556123	761	phospholipase A-2-activating protein, pu	0.996	0.737	0.769	0.0
224080283	761	predicted protein [Populus trichocarpa]	0.994	0.735	0.786	0.0
224103461	761	predicted protein [Populus trichocarpa]	0.989	0.731	0.774	0.0
356538817	756	PREDICTED: phospholipase A-2-activating	0.996	0.742	0.774	0.0
225428560	759	PREDICTED: phospholipase A-2-activating	0.960	0.712	0.783	0.0
297830546	758	transducin family protein [Arabidopsis l	0.994	0.738	0.725	0.0
18402031	760	phospholipase A-2-activating protein [Ar	0.994	0.736	0.722	0.0
30685107	760	phospholipase A-2-activating protein [Ar	0.994	0.736	0.720	0.0
218199020	756	hypothetical protein OsI_24733 [Oryza sa	0.996	0.742	0.655	0.0

>gi|356545299|ref|XP_003541081.1| PREDICTED: phospholipase A-2-activating protein-like [Glycine max]

 Score =  930 bits (2404), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/563 (78%), Positives = 500/563 (88%), Gaps = 1/563 (0%)

Query: 1   MPGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKD 60
           M G+GI+SASHD ++RLWA++G+VLMEMVGHTAIVYS+DSHASGLIVSGSEDRFAK+WKD
Sbjct: 195 MSGLGILSASHDGSLRLWAVSGEVLMEMVGHTAIVYSVDSHASGLIVSGSEDRFAKVWKD 254

Query: 61  GVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYK 120
           GVCVQSIEHPGCVWDAKF+ENGDIVTACSDGV RIWT+  D VAD LELE Y S+LS+YK
Sbjct: 255 GVCVQSIEHPGCVWDAKFMENGDIVTACSDGVVRIWTIDQDNVADQLELELYTSQLSEYK 314

Query: 121 LCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDG 180
             RK+VGGLKLE+LPGLEAL+IPGT  GQTKVVREGDNGVAY W+MKEQKWDK+GEVVDG
Sbjct: 315 SSRKRVGGLKLEELPGLEALKIPGTTDGQTKVVREGDNGVAYGWNMKEQKWDKIGEVVDG 374

Query: 181 PDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQQ 240
           P++  NR   DGIQYDYVFDVDIGDG PTRKLPYNRSDNPYD ADKWLLKENLP S+R+Q
Sbjct: 375 PEES-NRQFFDGIQYDYVFDVDIGDGMPTRKLPYNRSDNPYDVADKWLLKENLPLSFREQ 433

Query: 241 IVEFILQNTGQKDFTLNTSFRDPYTGASAYVPGQPSSMSAIPAKPTFKHIPKKGMLIFDA 300
           IV+FILQNTGQ + T + SFRDP+TG+ AYVPGQPS MS I AKPTFKHIPKKGML+FDA
Sbjct: 434 IVQFILQNTGQNNITFDASFRDPFTGSHAYVPGQPSRMSDISAKPTFKHIPKKGMLVFDA 493

Query: 301 AQFDGILKKIMEFNNALLFDLEKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDIS 360
           AQFDGILKKI EFNNAL  D EK+NLS++EL  SR+ A+VKILKDTSHYH S FAD DI+
Sbjct: 494 AQFDGILKKITEFNNALQSDQEKQNLSLTELNVSRLGAIVKILKDTSHYHSSKFADSDIA 553

Query: 361 LLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPA 420
           LLL LL++WP AMIFPVIDI+RM +LHPDGA LL KH E +ND+LME+I+KV+ NPT+PA
Sbjct: 554 LLLNLLRSWPIAMIFPVIDIVRMLVLHPDGAVLLHKHFEAENDILMEVIKKVTVNPTIPA 613

Query: 421 NLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLI 480
           NLLT IR VTNLF+N  +Y+WLQK+RSEILDAFSSC SS NKN+QLSYSTL+LNYAVLLI
Sbjct: 614 NLLTSIRVVTNLFRNLCYYNWLQKHRSEILDAFSSCSSSPNKNLQLSYSTLLLNYAVLLI 673

Query: 481 EKKDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLMLEGLVKKIALDFDVGNIARV 540
           E KD+EGQS VLSAALEIAE+E++EVD K+RALVA+G+LMLEGLV+K ALDFDV NIA+ 
Sbjct: 674 ETKDQEGQSQVLSAALEIAEDENVEVDPKFRALVAVGSLMLEGLVRKTALDFDVVNIAKA 733

Query: 541 AKASKETKIAEVGADIELLAKQS 563
           AK SKE KIAEVG+DIELL KQS
Sbjct: 734 AKGSKEAKIAEVGSDIELLTKQS 756

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556123|ref|XP_002519096.1| phospholipase A-2-activating protein, putative [Ricinus communis] gi|223541759|gb|EEF43307.1| phospholipase A-2-activating protein, putative [Ricinus communis]

 Score =  926 bits (2394), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/563 (76%), Positives = 504/563 (89%)

Query: 1   MPGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKD 60
           M G+G++SASHD  IRLWA+TGQVLMEMVGHT+IVYS++SH SGLIVSGSED  AKIWKD
Sbjct: 199 MQGLGVLSASHDGLIRLWAITGQVLMEMVGHTSIVYSVNSHISGLIVSGSEDCSAKIWKD 258

Query: 61  GVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYK 120
           GVCVQSIEHPGCVWDAKFLENGDIVTACSDGV RIWT H +++AD L+LE+Y S+LSQYK
Sbjct: 259 GVCVQSIEHPGCVWDAKFLENGDIVTACSDGVVRIWTSHQERIADPLDLESYVSQLSQYK 318

Query: 121 LCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDG 180
           L RK+VGGLKLEDLPGL+ALQIPGTN GQTK++REGDNGVAY+W++KEQKWDK+GEVVDG
Sbjct: 319 LSRKRVGGLKLEDLPGLDALQIPGTNDGQTKIIREGDNGVAYAWNLKEQKWDKIGEVVDG 378

Query: 181 PDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQQ 240
           P DG+ RP+LDGI+YDYVFDVDIGDGEP RKLPYN+++NPY  ADKWLLKENLP SYRQQ
Sbjct: 379 PADGIKRPVLDGIEYDYVFDVDIGDGEPIRKLPYNKTENPYSTADKWLLKENLPLSYRQQ 438

Query: 241 IVEFILQNTGQKDFTLNTSFRDPYTGASAYVPGQPSSMSAIPAKPTFKHIPKKGMLIFDA 300
           IV+FIL N+GQ+D  L++SFRDP+TG+SAYVPGQPS++SA+  K T+KHIPKKGML+FD 
Sbjct: 439 IVQFILHNSGQRDMALDSSFRDPFTGSSAYVPGQPSNLSAVSTKATYKHIPKKGMLVFDV 498

Query: 301 AQFDGILKKIMEFNNALLFDLEKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDIS 360
           AQFDGILKKI EFNNALL D EK+NLS+ E + SR+ AVVK LKD+SHYH SSFA  DI+
Sbjct: 499 AQFDGILKKITEFNNALLSDPEKQNLSLLEADISRLGAVVKTLKDSSHYHTSSFAQADIA 558

Query: 361 LLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPA 420
           LL KLLK+WP AMIFPV+DILRM +LHPDGAS++L H+EN ND+LMEMIE+V++N +L  
Sbjct: 559 LLFKLLKSWPVAMIFPVVDILRMIVLHPDGASVILMHIENGNDILMEMIERVTTNSSLAP 618

Query: 421 NLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLI 480
           N LT IR VTNLFKNS +YSWL ++RS I+DAFSSC  S NKN+QLSYSTLILN+AVLLI
Sbjct: 619 NFLTTIRLVTNLFKNSGYYSWLLRHRSGIIDAFSSCCPSPNKNLQLSYSTLILNFAVLLI 678

Query: 481 EKKDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLMLEGLVKKIALDFDVGNIARV 540
           EK D+EGQS VLSAALEIAEEE++EVDSK+RALVAIG+LML+GLVK+IALDFDV NIA++
Sbjct: 679 EKNDQEGQSQVLSAALEIAEEENLEVDSKFRALVAIGSLMLDGLVKQIALDFDVQNIAKI 738

Query: 541 AKASKETKIAEVGADIELLAKQS 563
           AKASKE KIAEVGADIELL KQS
Sbjct: 739 AKASKEAKIAEVGADIELLTKQS 761

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080283|ref|XP_002306082.1| predicted protein [Populus trichocarpa] gi|222849046|gb|EEE86593.1| predicted protein [Populus trichocarpa]

 Score =  925 bits (2391), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/562 (78%), Positives = 510/562 (90%)

Query: 1   MPGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKD 60
           M GVGI+SASHD +IRLWALTGQVLMEMVGH +IVYS+DSH SGLIVSGSED  AKIWKD
Sbjct: 199 MHGVGILSASHDGSIRLWALTGQVLMEMVGHASIVYSVDSHVSGLIVSGSEDCSAKIWKD 258

Query: 61  GVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYK 120
           GVCVQS+EHPGCVWD KFLENGDIVTACSDGV RIWT H +++AD ++L++Y S+LSQYK
Sbjct: 259 GVCVQSLEHPGCVWDVKFLENGDIVTACSDGVVRIWTSHQERIADPVDLDSYVSQLSQYK 318

Query: 121 LCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDG 180
           L RK+VGGLKLEDLPGL+ALQIPGT+ GQTK++REGDNGVAY+W+++EQKWDK+GEVVDG
Sbjct: 319 LSRKRVGGLKLEDLPGLDALQIPGTSDGQTKIIREGDNGVAYAWNLREQKWDKIGEVVDG 378

Query: 181 PDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQQ 240
           PDDGM RP+LDGI+YDYVFDVDIGDGEP RKLPYN SDNPY  ADKWLLKENLP +YRQQ
Sbjct: 379 PDDGMKRPVLDGIEYDYVFDVDIGDGEPIRKLPYNLSDNPYSTADKWLLKENLPLAYRQQ 438

Query: 241 IVEFILQNTGQKDFTLNTSFRDPYTGASAYVPGQPSSMSAIPAKPTFKHIPKKGMLIFDA 300
           IVEFILQN+GQ    L++SFRDPYTG++AY+PG  SSMS +PAKPTFKHIPKKGML+FD 
Sbjct: 439 IVEFILQNSGQGGVALDSSFRDPYTGSNAYIPGGSSSMSEVPAKPTFKHIPKKGMLVFDV 498

Query: 301 AQFDGILKKIMEFNNALLFDLEKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDIS 360
           AQF+GILKK+ EFN++LL D +KKNLS+SELE SR++AVVKILKDTSHYH S FAD DI+
Sbjct: 499 AQFEGILKKLTEFNHSLLSDSDKKNLSLSELEISRLSAVVKILKDTSHYHTSKFADADIA 558

Query: 361 LLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPA 420
           LLLKLLK+WP AMIFPVIDILRM +LHPDGA++LLKH+E++ND L+EMI++V++NP LP 
Sbjct: 559 LLLKLLKSWPLAMIFPVIDILRMLVLHPDGATVLLKHIEDENDTLIEMIKRVATNPPLPP 618

Query: 421 NLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLI 480
           NLLT  RAVTNLFKNS ++ WLQK+RSEILDAFSSCYSS NKN+QLSY+T+ILNYAVLLI
Sbjct: 619 NLLTITRAVTNLFKNSHYHYWLQKHRSEILDAFSSCYSSPNKNLQLSYATMILNYAVLLI 678

Query: 481 EKKDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLMLEGLVKKIALDFDVGNIARV 540
           EKKD EGQS VLSAALEI EEE+IEVDSK+RALVAIG+LML+GLVK+IALDFDV N+A+ 
Sbjct: 679 EKKDHEGQSQVLSAALEIVEEENIEVDSKFRALVAIGSLMLDGLVKRIALDFDVENVAKT 738

Query: 541 AKASKETKIAEVGADIELLAKQ 562
           AKASKE KIAEVGADIELL KQ
Sbjct: 739 AKASKEAKIAEVGADIELLTKQ 760

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103461|ref|XP_002313065.1| predicted protein [Populus trichocarpa] gi|222849473|gb|EEE87020.1| predicted protein [Populus trichocarpa]

 Score =  917 bits (2371), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/562 (77%), Positives = 506/562 (90%)

Query: 1   MPGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKD 60
           M G+GI+SASHD +IRLWALTG+VLMEMVGH +IVYS+DSH SGLIVSGSED  AKIWKD
Sbjct: 199 MHGLGILSASHDGSIRLWALTGEVLMEMVGHASIVYSVDSHVSGLIVSGSEDCSAKIWKD 258

Query: 61  GVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYK 120
           G CVQSIEHPGCVWD KFLENGDIVTACSDG  RIWT + +++A+  +L++Y S+LSQYK
Sbjct: 259 GACVQSIEHPGCVWDVKFLENGDIVTACSDGAVRIWTSYQERIAEPADLDSYVSQLSQYK 318

Query: 121 LCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDG 180
           + RK+VGGLKLEDLPGLEALQIPGT  GQTKV+REGDNGVAY+W+++EQKWDK+GEVVDG
Sbjct: 319 ISRKRVGGLKLEDLPGLEALQIPGTTDGQTKVIREGDNGVAYAWNLREQKWDKIGEVVDG 378

Query: 181 PDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQQ 240
           P+DGM RP+LDG +YDYVFDVDIGDGEP RKLPYNRSDNPYD ADKWLLKENLP +YRQQ
Sbjct: 379 PEDGMKRPVLDGFEYDYVFDVDIGDGEPIRKLPYNRSDNPYDTADKWLLKENLPLAYRQQ 438

Query: 241 IVEFILQNTGQKDFTLNTSFRDPYTGASAYVPGQPSSMSAIPAKPTFKHIPKKGMLIFDA 300
           IVEFILQN+GQ    L++SFRDP+TGA+AY+PG  SSMS + AKPTFKHIPKKGML+FD 
Sbjct: 439 IVEFILQNSGQGGVALDSSFRDPFTGANAYIPGGSSSMSVVSAKPTFKHIPKKGMLVFDV 498

Query: 301 AQFDGILKKIMEFNNALLFDLEKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDIS 360
           AQFDGILKKI EF+N+LL D  KK+LS+SELE SR+ AV+KILKDTSHYH S FAD DI+
Sbjct: 499 AQFDGILKKITEFHNSLLSDPVKKDLSLSELEISRLGAVIKILKDTSHYHTSRFADADIA 558

Query: 361 LLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPA 420
           LLLKLLK+WP AMIFPVIDILRM +LHPDGA++LLKHVE++ND+LMEMI++V++NP LP 
Sbjct: 559 LLLKLLKSWPLAMIFPVIDILRMLVLHPDGATVLLKHVEDENDILMEMIKRVTTNPPLPP 618

Query: 421 NLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLI 480
           NLLTGIRAVTNLFKN  +++WLQK++SEILD FSSCYSS NKN+QLSY+T+ILNYAVLLI
Sbjct: 619 NLLTGIRAVTNLFKNLPYHTWLQKHQSEILDVFSSCYSSPNKNLQLSYATMILNYAVLLI 678

Query: 481 EKKDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLMLEGLVKKIALDFDVGNIARV 540
           EKKD EGQS VL+AA+ IAE E+IEVDSK+RALVA+G+LML+GLVK+IALDFDV N+A+ 
Sbjct: 679 EKKDLEGQSQVLTAAIAIAEGENIEVDSKFRALVAVGSLMLDGLVKRIALDFDVENVAKT 738

Query: 541 AKASKETKIAEVGADIELLAKQ 562
           AKASKETKIAEVGADIELL KQ
Sbjct: 739 AKASKETKIAEVGADIELLTKQ 760

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538817|ref|XP_003537897.1| PREDICTED: phospholipase A-2-activating protein-like [Glycine max]

 Score =  915 bits (2366), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/562 (77%), Positives = 496/562 (88%), Gaps = 1/562 (0%)

Query: 1   MPGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKD 60
           M G+GI+SASHD ++RLWA++G+VLMEMVGHTAIVYS+DSHASGLIVSGSED FAK+WKD
Sbjct: 195 MSGLGILSASHDGSLRLWAVSGEVLMEMVGHTAIVYSVDSHASGLIVSGSEDHFAKVWKD 254

Query: 61  GVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYK 120
           GVCVQSIEHPGCVWDAKF+ENGDIVTACSDGV RIWTV  D VAD LEL+ Y S+LSQYK
Sbjct: 255 GVCVQSIEHPGCVWDAKFMENGDIVTACSDGVVRIWTVDQDNVADQLELDLYTSQLSQYK 314

Query: 121 LCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDG 180
             RK+VGGLKLE+LP LEAL+IPGT  GQTKVVREGDNGVAY W+MKEQKWDK+GEVVDG
Sbjct: 315 ASRKRVGGLKLEELPDLEALKIPGTTDGQTKVVREGDNGVAYGWNMKEQKWDKIGEVVDG 374

Query: 181 PDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQQ 240
           P++  NR   DGIQYDYVFDVDIGDG PTRKLPYNRSDNPYD ADKWLLKENLP S+R+Q
Sbjct: 375 PEES-NRQFFDGIQYDYVFDVDIGDGMPTRKLPYNRSDNPYDVADKWLLKENLPLSFREQ 433

Query: 241 IVEFILQNTGQKDFTLNTSFRDPYTGASAYVPGQPSSMSAIPAKPTFKHIPKKGMLIFDA 300
           IV+FILQNTGQ + T + SFRDP+TG+ AYVPGQPS MS I AKPTFKHIPKKGML+FDA
Sbjct: 434 IVQFILQNTGQNNTTFDASFRDPFTGSHAYVPGQPSRMSDISAKPTFKHIPKKGMLVFDA 493

Query: 301 AQFDGILKKIMEFNNALLFDLEKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDIS 360
           AQFDGILKKI EFN AL  D EK+NLS++EL  SR+ A+VKILKDTSHYH S FAD DI+
Sbjct: 494 AQFDGILKKISEFNCALQSDQEKQNLSLTELNVSRLGAIVKILKDTSHYHSSKFADSDIA 553

Query: 361 LLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPA 420
           LLL LL++WP AMIFPVIDI+RM +LHPDGA LL KH E +ND+LME+I+KV+ NPT+PA
Sbjct: 554 LLLNLLRSWPMAMIFPVIDIVRMLVLHPDGAILLQKHFEAENDILMEVIKKVTVNPTIPA 613

Query: 421 NLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLI 480
           NLLT IRAVTNLF+N  +Y+WLQK+RSEILDAFSSC SS NKN+QLSYSTL+LNYAVLLI
Sbjct: 614 NLLTSIRAVTNLFRNLCYYNWLQKHRSEILDAFSSCSSSPNKNLQLSYSTLLLNYAVLLI 673

Query: 481 EKKDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLMLEGLVKKIALDFDVGNIARV 540
           E KD+EGQS VLSAALEI E+E++EVD K+RALVA+G+LMLEGLV+K ALDFDV NIA+ 
Sbjct: 674 ETKDQEGQSQVLSAALEIGEDENVEVDPKFRALVAVGSLMLEGLVRKTALDFDVVNIAKA 733

Query: 541 AKASKETKIAEVGADIELLAKQ 562
           AK SKE KIAE+G+DIELL K+
Sbjct: 734 AKGSKEGKIAEIGSDIELLTKR 755

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428560|ref|XP_002284653.1| PREDICTED: phospholipase A-2-activating protein [Vitis vinifera] gi|297741417|emb|CBI32548.3| unnamed protein product [Vitis vinifera]

 Score =  909 bits (2350), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/563 (78%), Positives = 508/563 (90%)

Query: 1   MPGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKD 60
           MP +G++SASHD +IRLWALTG+ LMEMVGHT+IVYS+DSHASGLIVSGSED FAKIWKD
Sbjct: 197 MPDLGVLSASHDGSIRLWALTGETLMEMVGHTSIVYSVDSHASGLIVSGSEDCFAKIWKD 256

Query: 61  GVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYK 120
           GVCVQSIEHPGCVWD KFLENGD+VTACSDGV RIWTV  D++A+S+ELE+Y S LSQ+K
Sbjct: 257 GVCVQSIEHPGCVWDTKFLENGDVVTACSDGVVRIWTVQQDRIANSVELESYFSRLSQFK 316

Query: 121 LCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDG 180
           + RK+VGGLKLEDLPGLEALQIPGT+ GQT VVREGDNG+AYSW+++EQKWDK+GEVVDG
Sbjct: 317 ISRKRVGGLKLEDLPGLEALQIPGTSDGQTIVVREGDNGMAYSWNLREQKWDKIGEVVDG 376

Query: 181 PDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQQ 240
           PDD M RP+LDGIQYDYVFDVDIGDGEP RKLPYNRSDNPY  ADKWLLKENLP SYRQQ
Sbjct: 377 PDDTMARPVLDGIQYDYVFDVDIGDGEPIRKLPYNRSDNPYSTADKWLLKENLPLSYRQQ 436

Query: 241 IVEFILQNTGQKDFTLNTSFRDPYTGASAYVPGQPSSMSAIPAKPTFKHIPKKGMLIFDA 300
           +VEFILQN+GQK+F L+TS+RDPYTGA+AYVPG+ S+ SA+P KP+FKHIPKKG+L+FDA
Sbjct: 437 VVEFILQNSGQKNFALDTSYRDPYTGANAYVPGESSNKSAVPVKPSFKHIPKKGILVFDA 496

Query: 301 AQFDGILKKIMEFNNALLFDLEKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDIS 360
           AQFDGILKKI EFNNAL+ D EKK+LS++E+E SR+ AVVKILK+TS YH S+FADVDI+
Sbjct: 497 AQFDGILKKISEFNNALISDPEKKSLSLTEVEISRLVAVVKILKETSRYHSSTFADVDIA 556

Query: 361 LLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPA 420
           L+LKLLK+WP AMIFPVIDILRM ILHPDGA  LLK +E++NDVLM+MI+K++ +P L A
Sbjct: 557 LMLKLLKSWPIAMIFPVIDILRMIILHPDGAIRLLKLLEDENDVLMDMIKKITVSPALAA 616

Query: 421 NLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLI 480
           NLLT IRAV NLFKNS + +WL  +RSEILDAFSSC SSSNKNV LSYSTL+LNYAV LI
Sbjct: 617 NLLTSIRAVCNLFKNSCYSNWLLNHRSEILDAFSSCNSSSNKNVLLSYSTLLLNYAVFLI 676

Query: 481 EKKDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLMLEGLVKKIALDFDVGNIARV 540
           EKKD+EGQSHVLSA LEIAE E+++VDSKYRALVAIGTLMLEG VKKIALDFDV +IA+ 
Sbjct: 677 EKKDQEGQSHVLSAVLEIAEGENLDVDSKYRALVAIGTLMLEGSVKKIALDFDVESIAKA 736

Query: 541 AKASKETKIAEVGADIELLAKQS 563
           AK SK+ K+AEVGADIELL KQ+
Sbjct: 737 AKVSKDAKVAEVGADIELLTKQN 759

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830546|ref|XP_002883155.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297328995|gb|EFH59414.1| transducin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  888 bits (2295), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/562 (72%), Positives = 497/562 (88%)

Query: 1   MPGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKD 60
           MP +G +SASHD +IRLWAL+G+VL+EMVGHT++VYS+D+H+SGLIVSGSEDR AKIWKD
Sbjct: 197 MPDLGFLSASHDGSIRLWALSGEVLLEMVGHTSLVYSVDAHSSGLIVSGSEDRHAKIWKD 256

Query: 61  GVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYK 120
           GVCVQS+EHPGCVWDAKFLE+GDIVTACSDGV R+WTV  D +AD +E++AY S++SQYK
Sbjct: 257 GVCVQSLEHPGCVWDAKFLESGDIVTACSDGVVRVWTVRHDAIADQMEIDAYDSQISQYK 316

Query: 121 LCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDG 180
           L RKKVGGLKL++LPGL++L  PGT+ GQTKVVREGDNGVAY+W+MKEQ+WDK+GEVVDG
Sbjct: 317 LSRKKVGGLKLDELPGLDSLTSPGTSDGQTKVVREGDNGVAYAWNMKEQRWDKIGEVVDG 376

Query: 181 PDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQQ 240
           PD   +RPI +G+QYD+VFDVDIGDGEP RKLPYNRSDNPYDAADKWLLKENLPF+YRQQ
Sbjct: 377 PDGVADRPIYEGVQYDFVFDVDIGDGEPIRKLPYNRSDNPYDAADKWLLKENLPFAYRQQ 436

Query: 241 IVEFILQNTGQKDFTLNTSFRDPYTGASAYVPGQPSSMSAIPAKPTFKHIPKKGMLIFDA 300
           IVEFILQN+GQKDF  N SFRDP+TGA+AYVPGQ S  +A PAKP +KHIPKKG+L+FD 
Sbjct: 437 IVEFILQNSGQKDFNFNPSFRDPFTGANAYVPGQASHTAATPAKPLYKHIPKKGVLVFDV 496

Query: 301 AQFDGILKKIMEFNNALLFDLEKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDIS 360
           AQ+DGILKK+ EFN  L  D    + S++ELE SRV A+V ILKDTSHYH ++FAD+DI+
Sbjct: 497 AQYDGILKKMTEFNTTLRSDSVNNDKSLTELEVSRVGAIVNILKDTSHYHSTNFADMDIA 556

Query: 361 LLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPA 420
           LLLK+L+ WPPAM+FP  DI+RM +LHP GASLL+KHVEN ND+L+++I+KV+ +  LPA
Sbjct: 557 LLLKVLQAWPPAMMFPATDIVRMLVLHPHGASLLIKHVENNNDLLLDLIKKVTEDSALPA 616

Query: 421 NLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLI 480
           NLLT +R + NLFKNSS++ WLQ + S+ILDAFS+CYSS NKN+QL+YSTL+LNYAVLL 
Sbjct: 617 NLLTTVRVLVNLFKNSSFHYWLQTHHSQILDAFSNCYSSPNKNLQLAYSTLLLNYAVLLT 676

Query: 481 EKKDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLMLEGLVKKIALDFDVGNIARV 540
           EKKD+EGQ+ VLSAAL++AEEE+ +VDSK+R+LVAIG+LMLEGLVKKIA+DFDV +IA+ 
Sbjct: 677 EKKDQEGQAQVLSAALQVAEEEAADVDSKFRSLVAIGSLMLEGLVKKIAIDFDVESIAKS 736

Query: 541 AKASKETKIAEVGADIELLAKQ 562
           AKASKE KIAEVGADI+L+ +Q
Sbjct: 737 AKASKEGKIAEVGADIDLVIRQ 758

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18402031|ref|NP_566620.1| phospholipase A-2-activating protein [Arabidopsis thaliana] gi|15294240|gb|AAK95297.1|AF410311_1 AT3g18860/MCB22_3 [Arabidopsis thaliana] gi|9294695|dbj|BAB03095.1| unnamed protein product [Arabidopsis thaliana] gi|332642639|gb|AEE76160.1| phospholipase A-2-activating protein [Arabidopsis thaliana]

 Score =  886 bits (2290), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/562 (72%), Positives = 496/562 (88%)

Query: 1   MPGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKD 60
           MP +G +SASHD +IRLWAL+G+VL+EMVGHT++VYS+D+H+SGLIVS SEDR AKIWKD
Sbjct: 199 MPDLGFLSASHDGSIRLWALSGEVLLEMVGHTSLVYSVDAHSSGLIVSASEDRHAKIWKD 258

Query: 61  GVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYK 120
           GVCVQS+EHPGC+WDAKFLE GDIVTACSDGV R+WTV  D +AD +E++AY S++SQYK
Sbjct: 259 GVCVQSLEHPGCIWDAKFLETGDIVTACSDGVVRVWTVRHDAIADQMEIDAYDSQISQYK 318

Query: 121 LCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDG 180
           L RKKVGGLKL++LPGL++L  PGT+ GQTKVVREGDNGVAY+W+MKEQ+WDK+GEVVDG
Sbjct: 319 LSRKKVGGLKLDELPGLDSLTSPGTSDGQTKVVREGDNGVAYAWNMKEQRWDKIGEVVDG 378

Query: 181 PDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQQ 240
           PD   +RPI +G+QYD+VFDVDIGDGEP RKLPYNRSDNPYDAADKWLLKENLPF+YRQQ
Sbjct: 379 PDGVADRPIHEGVQYDFVFDVDIGDGEPIRKLPYNRSDNPYDAADKWLLKENLPFAYRQQ 438

Query: 241 IVEFILQNTGQKDFTLNTSFRDPYTGASAYVPGQPSSMSAIPAKPTFKHIPKKGMLIFDA 300
           IVEFILQN+GQKDF  N SFRDP+TGA+AYVPGQ S  +A PAKP +KHIPK+G+L+FDA
Sbjct: 439 IVEFILQNSGQKDFNFNPSFRDPFTGANAYVPGQASRTAATPAKPLYKHIPKRGVLVFDA 498

Query: 301 AQFDGILKKIMEFNNALLFDLEKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDIS 360
           AQ+DGILKK+ EFN  L  D    + S++ELE SRV A+V ILKDTSHYH ++FAD+DI+
Sbjct: 499 AQYDGILKKMTEFNTTLRSDAVNNDKSLTELEVSRVGAIVNILKDTSHYHSTNFADMDIA 558

Query: 361 LLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPA 420
           LLLK+L+ WPPAM+FP  DI+RM +LH  GASLL+KHVEN ND+L+++I+KV+ +  LPA
Sbjct: 559 LLLKVLQAWPPAMMFPATDIVRMLVLHHHGASLLIKHVENNNDLLLDLIKKVTEDSALPA 618

Query: 421 NLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLI 480
           NLLT +R + NLFKNSS++ WLQ + S+ILDAFS+CYSS NKN+QL+YSTL+LNYAVLLI
Sbjct: 619 NLLTTVRVLVNLFKNSSFHYWLQTHHSQILDAFSNCYSSPNKNLQLAYSTLLLNYAVLLI 678

Query: 481 EKKDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLMLEGLVKKIALDFDVGNIARV 540
           EKKD+EGQ+ VLSAAL++AEEE+ +VDSK+R+LVAIG+LMLEGLVKKIA+DFDV +IA+ 
Sbjct: 679 EKKDQEGQAQVLSAALQVAEEEAADVDSKFRSLVAIGSLMLEGLVKKIAIDFDVESIAKS 738

Query: 541 AKASKETKIAEVGADIELLAKQ 562
           AKASKE KIAEVGADI+L+ +Q
Sbjct: 739 AKASKEAKIAEVGADIDLVIRQ 760

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30685107|ref|NP_850612.1| phospholipase A-2-activating protein [Arabidopsis thaliana] gi|332642640|gb|AEE76161.1| phospholipase A-2-activating protein [Arabidopsis thaliana]

 Score =  882 bits (2280), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/562 (72%), Positives = 495/562 (88%)

Query: 1   MPGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKD 60
           MP +G +SASHD +IRLWAL+G+VL+EMVGHT++VYS+D+H+SGLIVS SEDR AKIWKD
Sbjct: 199 MPDLGFLSASHDGSIRLWALSGEVLLEMVGHTSLVYSVDAHSSGLIVSASEDRHAKIWKD 258

Query: 61  GVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYK 120
           GVCVQS+EHPGC+WDAKFLE GDIVTACSDGV R+WTV  D +AD +E++AY S++SQYK
Sbjct: 259 GVCVQSLEHPGCIWDAKFLETGDIVTACSDGVVRVWTVRHDAIADQMEIDAYDSQISQYK 318

Query: 121 LCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDG 180
           L RKKVGGLKL++LPGL++L  PGT+ GQTKVVREGDNGVAY+W+MKEQ+WDK+GEVVDG
Sbjct: 319 LSRKKVGGLKLDELPGLDSLTSPGTSDGQTKVVREGDNGVAYAWNMKEQRWDKIGEVVDG 378

Query: 181 PDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQQ 240
           PD   +RPI +G+QYD+VFDVDIGDGEP RKLPYNRSDNPYDAADKWLLKENLPF+YRQQ
Sbjct: 379 PDGVADRPIHEGVQYDFVFDVDIGDGEPIRKLPYNRSDNPYDAADKWLLKENLPFAYRQQ 438

Query: 241 IVEFILQNTGQKDFTLNTSFRDPYTGASAYVPGQPSSMSAIPAKPTFKHIPKKGMLIFDA 300
           IVEFILQN+GQKDF  N SFRDP+TGA+AYVPGQ S  +A PAKP +KHIPK+G+L+FDA
Sbjct: 439 IVEFILQNSGQKDFNFNPSFRDPFTGANAYVPGQASRTAATPAKPLYKHIPKRGVLVFDA 498

Query: 301 AQFDGILKKIMEFNNALLFDLEKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDIS 360
           AQ+DGILKK+ EFN  L  D    + S++ELE SRV A+V ILKDTSHYH ++FAD+DI+
Sbjct: 499 AQYDGILKKMTEFNTTLRSDAVNNDKSLTELEVSRVGAIVNILKDTSHYHSTNFADMDIA 558

Query: 361 LLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPA 420
           LLLK+L+ WPPAM+FP  DI+RM +LH  GASLL+KHVEN ND+L+++I+KV+ +  LPA
Sbjct: 559 LLLKVLQAWPPAMMFPATDIVRMLVLHHHGASLLIKHVENNNDLLLDLIKKVTEDSALPA 618

Query: 421 NLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLI 480
           NLLT +R + NLFKNSS++ WLQ + S+ILDAFS+CYSS NKN+QL+YSTL+LNYAVLLI
Sbjct: 619 NLLTTVRVLVNLFKNSSFHYWLQTHHSQILDAFSNCYSSPNKNLQLAYSTLLLNYAVLLI 678

Query: 481 EKKDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLMLEGLVKKIALDFDVGNIARV 540
           EKKD+EGQ+ VLSAAL++ EEE+ +VDSK+R+LVAIG+LMLEGLVKKIA+DFDV +IA+ 
Sbjct: 679 EKKDQEGQAQVLSAALQVPEEEAADVDSKFRSLVAIGSLMLEGLVKKIAIDFDVESIAKS 738

Query: 541 AKASKETKIAEVGADIELLAKQ 562
           AKASKE KIAEVGADI+L+ +Q
Sbjct: 739 AKASKEAKIAEVGADIDLVIRQ 760

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218199020|gb|EEC81447.1| hypothetical protein OsI_24733 [Oryza sativa Indica Group]

 Score =  785 bits (2027), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/563 (65%), Positives = 455/563 (80%), Gaps = 2/563 (0%)

Query: 1   MPGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKD 60
           MPG+GI+SASHD TI++WALTGQ L+EM+GHT++VYS+D+H+SG+IVSGSEDR AKIWKD
Sbjct: 194 MPGLGILSASHDGTIKVWALTGQPLLEMIGHTSLVYSVDAHSSGVIVSGSEDRSAKIWKD 253

Query: 61  GVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYK 120
           G+CVQSIEHPGC+W AKFLENGDIVTACSDG+ RIWT  +++     EL A+   +SQY 
Sbjct: 254 GICVQSIEHPGCIWGAKFLENGDIVTACSDGIVRIWTTDNNRFCSDEELAAFTDLISQYI 313

Query: 121 LCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDG 180
           L RK VGGLKL DLPG+EALQ+PG + GQT +VREGDNGVAYSW+ KE KWDK+GEVVDG
Sbjct: 314 LSRKTVGGLKLSDLPGIEALQVPGNSDGQTLIVREGDNGVAYSWNSKELKWDKIGEVVDG 373

Query: 181 PDDGMNRP--ILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYR 238
           P D    P    DG++YD+VF+VDIGDGEP RKLPYNRSD+PY  ADKWLLKENLP +YR
Sbjct: 374 PGDAAAAPGQFHDGVRYDFVFNVDIGDGEPMRKLPYNRSDDPYAVADKWLLKENLPLTYR 433

Query: 239 QQIVEFILQNTGQKDFTLNTSFRDPYTGASAYVPGQPSSMSAIPAKPTFKHIPKKGMLIF 298
           QQ+VEFILQN+GQ +F  + SFRDPYTGA+AYVPGQ +S +    KPTFKHIPK GML F
Sbjct: 434 QQVVEFILQNSGQNNFVPDPSFRDPYTGANAYVPGQSASSTVSAPKPTFKHIPKNGMLTF 493

Query: 299 DAAQFDGILKKIMEFNNALLFDLEKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVD 358
           + AQF+GILKK+ EFN  L  +LE+K LS+SE+E SR+AA+ K+LK+TS YH S  AD D
Sbjct: 494 ETAQFEGILKKLSEFNATLSSNLEQKELSLSEIELSRLAAIAKVLKETSFYHTSKLADAD 553

Query: 359 ISLLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTL 418
           ++LLLK+LK+WP  M+FPVID LRM +LHPDGA+LLLK +E+ NDVL E   KV + P  
Sbjct: 554 MTLLLKMLKSWPTQMMFPVIDFLRMFVLHPDGATLLLKAIESGNDVLAETFHKVVTPPVQ 613

Query: 419 PANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVL 478
           P N+LT ++AVTNLF     + WL+ +  EI+D+ SSC ++ +KN  L+YSTL+LNYAVL
Sbjct: 614 PPNVLTTLKAVTNLFDKPCLHQWLRIHGMEIIDSVSSCKTTFSKNAHLAYSTLLLNYAVL 673

Query: 479 LIEKKDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLMLEGLVKKIALDFDVGNIA 538
            IE KDE+ Q+ +LSAALEIAE+++   DSKYRALVAIG+LML GLVK IALD DV ++A
Sbjct: 674 SIESKDEQSQAQILSAALEIAEDDTQVADSKYRALVAIGSLMLNGLVKSIALDLDVKSVA 733

Query: 539 RVAKASKETKIAEVGADIELLAK 561
             A+ASK++KIAEVGADIELL +
Sbjct: 734 NTARASKDSKIAEVGADIELLTR 756

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	563
TAIR|locus:2087921	760	AT3G18860 "AT3G18860" [Arabido	0.998	0.739	0.706	2.2e-224
UNIPROTKB|F1NGY5	805	PLAA "Uncharacterized protein"	0.497	0.347	0.386	2e-77
RGD|621245	795	Plaa "phospholipase A2, activa	0.513	0.363	0.384	4.6e-73
UNIPROTKB|P54319	795	Plaa "Phospholipase A-2-activa	0.513	0.363	0.384	4.6e-73
ASPGD|ASPL0000064653	811	AN7704 [Emericella nidulans (t	0.971	0.674	0.327	1.1e-70
POMBASE|SPBC887.04c	718	lub1 "WD repeat protein Lub1"	0.436	0.342	0.436	8.8e-61
UNIPROTKB|G5EH30	797	MGCH7_ch7g140 "Ubiquitin homeo	0.944	0.667	0.291	1.2e-55
UNIPROTKB|A7Z055	796	PLAA "PLAA protein" [Bos tauru	0.637	0.451	0.344	6.4e-54
FB|FBgn0024314	787	Plap "Phospholipase A2 activat	0.955	0.683	0.281	3.6e-53
UNIPROTKB|Q9Y263	795	PLAA "Phospholipase A-2-activa	0.637	0.451	0.335	1.3e-52

TAIR|locus:2087921 AT3G18860 "AT3G18860" [Arabidopsis thaliana (taxid:3702)]

 Score = 2166 (767.5 bits), Expect = 2.2e-224, P = 2.2e-224
 Identities = 397/562 (70%), Positives = 483/562 (85%)

Query:     1 MPGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKD 60
             MP +G +SASHD +IRLWAL+G+VL+EMVGHT++VYS+D+H+SGLIVS SEDR AKIWKD
Sbjct:   199 MPDLGFLSASHDGSIRLWALSGEVLLEMVGHTSLVYSVDAHSSGLIVSASEDRHAKIWKD 258

Query:    61 GVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYK 120
             GVCVQS+EHPGC+WDAKFLE GDIVTACSDGV R+WTV  D +AD +E++AY S++SQYK
Sbjct:   259 GVCVQSLEHPGCIWDAKFLETGDIVTACSDGVVRVWTVRHDAIADQMEIDAYDSQISQYK 318

Query:   121 LCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDG 180
             L RKKVGGLKL++LPGL++L  PGT+ GQTKVVREGDNGVAY+W+MKEQ+WDK+GEVVDG
Sbjct:   319 LSRKKVGGLKLDELPGLDSLTSPGTSDGQTKVVREGDNGVAYAWNMKEQRWDKIGEVVDG 378

Query:   181 PDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQQ 240
             PD   +RPI +G+QYD+VFDVDIGDGEP RKLPYNRSDNPYDAADKWLLKENLPF+YRQQ
Sbjct:   379 PDGVADRPIHEGVQYDFVFDVDIGDGEPIRKLPYNRSDNPYDAADKWLLKENLPFAYRQQ 438

Query:   241 IVEFILQNTGQKDFTLNTSFRDPYTGASAYVPGQPSSMSAIPAKPTFKHIPKKGMLIFDA 300
             IVEFILQN+GQKDF  N SFRDP+TGA+AYVPGQ S  +A PAKP +KHIPK+G+L+FDA
Sbjct:   439 IVEFILQNSGQKDFNFNPSFRDPFTGANAYVPGQASRTAATPAKPLYKHIPKRGVLVFDA 498

Query:   301 AQFDGILKKIMEFNNALLFDLEKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDIS 360
             AQ+DGILKK+ EFN  L  D    + S++ELE SRV A+V ILKDTSHYH ++FAD+DI+
Sbjct:   499 AQYDGILKKMTEFNTTLRSDAVNNDKSLTELEVSRVGAIVNILKDTSHYHSTNFADMDIA 558

Query:   361 LLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPA 420
             LLLK+L+ WPPAM+FP  DI+RM +LH  GASLL+KHVEN ND+L+++I+KV+ +  LPA
Sbjct:   559 LLLKVLQAWPPAMMFPATDIVRMLVLHHHGASLLIKHVENNNDLLLDLIKKVTEDSALPA 618

Query:   421 NLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLI 480
             NLLT +R + NLFKNSS++ WLQ + S+ILDAFS+CYSS NKN+QL+YSTL+LNYAVLLI
Sbjct:   619 NLLTTVRVLVNLFKNSSFHYWLQTHHSQILDAFSNCYSSPNKNLQLAYSTLLLNYAVLLI 678

Query:   481 EKKDEEGQSHVXXXXXXXXXXXXXXVDSKYRALVAIGTLMLEGLVKKIALDFDVGNIARV 540
             EKKD+EGQ+ V              VDSK+R+LVAIG+LMLEGLVKKIA+DFDV +IA+ 
Sbjct:   679 EKKDQEGQAQVLSAALQVAEEEAADVDSKFRSLVAIGSLMLEGLVKKIAIDFDVESIAKS 738

Query:   541 AKASKETKIAEVGADIELLAKQ 562
             AKASKE KIAEVGADI+L+ +Q
Sbjct:   739 AKASKEAKIAEVGADIDLVIRQ 760

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

UNIPROTKB|F1NGY5 PLAA "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 548 (198.0 bits), Expect = 2.0e-77, Sum P(2) = 2.0e-77
 Identities = 112/290 (38%), Positives = 167/290 (57%)

Query:     7 ISASHDCTIRLWALTGQVLMEMVGHTAIVYSID--SHASGLIVSGSEDRFAKIWKDGVCV 64
             +S S+D ++R W ++G+ L    GHT  +YS+    H    I +G EDR  +IWK G CV
Sbjct:   217 LSCSNDASVRRWHISGECLHVYYGHTNYIYSVSVFPHCKDFITTG-EDRSLRIWKQGECV 275

Query:    65 QSIEHPG-CVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCR 123
             Q+I  P   VW    L+N DIV   SDG+ R++T   ++ A + E++A+ +ELSQ  +  
Sbjct:   276 QTIRLPAQSVWCCCVLDNDDIVVGASDGIIRVFTKSLERTASAEEIQAFENELSQASIDP 335

Query:   124 KK--VGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVD-- 179
             K   +G +  +DLPG E L+ PG   GQT+++++     AY W + E +W K+G+VV   
Sbjct:   336 KTGDLGDINADDLPGKEHLKDPGMRDGQTRLIKDNGKVEAYQWSVSEGRWIKIGDVVGSS 395

Query:   180 -GPDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYR 238
              G      + + +G +YDYVF +D+ +  P+ KLPYN SD+P+  A  +L K +L   + 
Sbjct:   396 GGTQQTSGKVLFEGKEYDYVFTIDVNESGPSYKLPYNISDDPWLTAYNFLQKNDLNPMFL 455

Query:   239 QQIVEFILQNT-GQKDFTLNTSFRDPYTGASAYVPGQPSSMSAIPAKPTF 287
              Q+ +FI+ NT GQ     NT F DP+TGA  YVPG  S  +  PA   F
Sbjct:   456 DQVAKFIIDNTKGQAPLNTNTEFSDPFTGAGRYVPGSSSLSNTAPAADPF 505

GO:0006954 "inflammatory response" evidence=IEA

GO:0016005 "phospholipase A2 activator activity" evidence=IEA

RGD|621245 Plaa "phospholipase A2, activating protein" [Rattus norvegicus (taxid:10116)]

 Score = 532 (192.3 bits), Expect = 4.6e-73, Sum P(2) = 4.6e-73
 Identities = 116/302 (38%), Positives = 177/302 (58%)

Query:     7 ISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGL-IVSGSEDRFAKIWKDGVCVQ 65
             +S ++D +IR W +TG+ L    GHT  +YSI    +    V+ +EDR  +IWK G C Q
Sbjct:   206 LSCANDASIRRWQITGECLGVYYGHTNYIYSISVFPNCRDFVTTAEDRSLRIWKHGECAQ 265

Query:    66 SIEHPG-CVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRK 124
             +I  P   +W    L+NGDIV   SDG+ R++T   ++ A + E++A+  ELSQ  +  K
Sbjct:   266 TIRLPAQSIWCCCVLDNGDIVVGASDGIIRVFTEADERTASAEEIKAFERELSQATIDSK 325

Query:   125 K--VGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVV--DG 180
                +G +  E LPG E L  PGT  GQT+++R+G+   AY W + + +W K+G+VV   G
Sbjct:   326 TGDLGDINAEQLPGREHLNEPGTREGQTRLIRDGERVEAYQWSVSDGRWIKIGDVVGSSG 385

Query:   181 PDDGMNRPIL-DGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQ 239
              +   +  +L +G ++DYVF +D+ +G P+ KLPYN SD+P+  A  +L K +L   +  
Sbjct:   386 ANQQTSGKVLYEGKEFDYVFSIDVNEGGPSYKLPYNVSDDPWLVAYNFLQKNDLNPMFLD 445

Query:   240 QIVEFILQNTGQKDFTL-NTSFRDPYTGASAYVPGQ--PSS--MSAIPAKPTFKHIP-KK 293
             Q+ +FI+ NT  +   L NTSF DP+TG   YVPG   PS+   +A P     +++P   
Sbjct:   446 QVAKFIIDNTKGQTLGLGNTSFSDPFTGGGRYVPGTSGPSNTVQTADPFTGAGRYMPGSA 505

Query:   294 GM 295
             GM
Sbjct:   506 GM 507

GO:0006954 "inflammatory response" evidence=IEA;ISO

GO:0016005 "phospholipase A2 activator activity" evidence=IEA;ISO

GO:0043085 "positive regulation of catalytic activity" evidence=ISO

GO:0070062 "extracellular vesicular exosome" evidence=ISO

UNIPROTKB|P54319 Plaa "Phospholipase A-2-activating protein" [Rattus norvegicus (taxid:10116)]

 Score = 532 (192.3 bits), Expect = 4.6e-73, Sum P(2) = 4.6e-73
 Identities = 116/302 (38%), Positives = 177/302 (58%)

Query:     7 ISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGL-IVSGSEDRFAKIWKDGVCVQ 65
             +S ++D +IR W +TG+ L    GHT  +YSI    +    V+ +EDR  +IWK G C Q
Sbjct:   206 LSCANDASIRRWQITGECLGVYYGHTNYIYSISVFPNCRDFVTTAEDRSLRIWKHGECAQ 265

Query:    66 SIEHPG-CVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRK 124
             +I  P   +W    L+NGDIV   SDG+ R++T   ++ A + E++A+  ELSQ  +  K
Sbjct:   266 TIRLPAQSIWCCCVLDNGDIVVGASDGIIRVFTEADERTASAEEIKAFERELSQATIDSK 325

Query:   125 K--VGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVV--DG 180
                +G +  E LPG E L  PGT  GQT+++R+G+   AY W + + +W K+G+VV   G
Sbjct:   326 TGDLGDINAEQLPGREHLNEPGTREGQTRLIRDGERVEAYQWSVSDGRWIKIGDVVGSSG 385

Query:   181 PDDGMNRPIL-DGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQ 239
              +   +  +L +G ++DYVF +D+ +G P+ KLPYN SD+P+  A  +L K +L   +  
Sbjct:   386 ANQQTSGKVLYEGKEFDYVFSIDVNEGGPSYKLPYNVSDDPWLVAYNFLQKNDLNPMFLD 445

Query:   240 QIVEFILQNTGQKDFTL-NTSFRDPYTGASAYVPGQ--PSS--MSAIPAKPTFKHIP-KK 293
             Q+ +FI+ NT  +   L NTSF DP+TG   YVPG   PS+   +A P     +++P   
Sbjct:   446 QVAKFIIDNTKGQTLGLGNTSFSDPFTGGGRYVPGTSGPSNTVQTADPFTGAGRYMPGSA 505

Query:   294 GM 295
             GM
Sbjct:   506 GM 507

GO:0006954 "inflammatory response" evidence=IEA

GO:0016005 "phospholipase A2 activator activity" evidence=IEA

ASPGD|ASPL0000064653 AN7704 [Emericella nidulans (taxid:162425)]

 Score = 682 (245.1 bits), Expect = 1.1e-70, Sum P(2) = 1.1e-70
 Identities = 191/583 (32%), Positives = 297/583 (50%)

Query:     3 GVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKDGV 62
             G   +SAS+D  IRL+ L G ++ E+ GH + +YS+    +G +VS  EDR  +IW +  
Sbjct:   233 GANFVSASNDGVIRLFTLQGDLVGELHGHESFIYSLAVLPTGELVSSGEDRTVRIWNETQ 292

Query:    63 CVQSIEHPGC-VWDAKFL-ENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYK 120
             CVQ+I HP   VW      ENGDIVT  SD VTR++T   ++ A +  L+ + + + +  
Sbjct:   293 CVQTITHPAISVWGVAVCPENGDIVTGASDRVTRVFTRAPERQASAEVLQQFETAVRESA 352

Query:   121 LCRKKVGGLKLEDLPGLEALQIP-GTNAGQTKVVREGDNGV-AYSWDMKEQKWDKLGEVV 178
             +  ++VG +  E LPG E LQ   GT  GQ +++RE +  V A++W     +W+ +G VV
Sbjct:   353 IPAQQVGKINKEKLPGPEFLQQKSGTKDGQVQMIREANGSVTAHTWSAALGRWESVGTVV 412

Query:   179 DGPDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYR 238
             D       +    G  YD+VFDVD+ DG+P  KLPYN S NPY+AA K++    LP SY 
Sbjct:   413 DSAGSSGRKTEYLGQDYDFVFDVDVEDGKPPLKLPYNLSQNPYEAATKFIGDNELPMSYL 472

Query:   239 QQIVEFILQNT-----GQKDFTLNTSFRDPYTGASAYVPGQ-PSSMSAIP-AKPTFKHIP 291
              Q+ +FI+QNT     GQ          DP+     Y PG  P+  +AIP ++P  K +P
Sbjct:   473 DQVAQFIVQNTQGATIGQPSQE-TAGGPDPWGQDRRYRPGDAPAQSTAIPESRP--KVLP 529

Query:   292 KKGMLIFDAAQFDGILKKIMEFNNALLFDLEKK-NLSMSELETSRVAAVVKILKDTSHYH 350
             +K  L   +A    I KK+ E N  L+ +  K  +LS SELET  + ++   L+ ++   
Sbjct:   530 QKTYLSIKSANLKVISKKLNELNGKLVSEGSKDLSLSPSELET--IVSLCNELEASNTLK 587

Query:   351 CSSFADVDISLLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIE 410
               S  +  + LL K+   WP A   P +D+LR   L      +      N  D++  +IE
Sbjct:   588 GPSAVEAVVILLFKVATVWPAANRLPGLDLLR---LFAAATPVTATADYNGKDLVSGIIE 644

Query:   411 K-VSSNPTLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSS----NKNVQ 465
               V   P    N +  +R   NLF+  +    +     +++ A  +C ++S    N+N+ 
Sbjct:   645 SGVFDAPVNVNNAMLSVRMFANLFETDAGRRLIIDRFDQVIAAIRTCLTNSGSSVNRNLT 704

Query:   466 LSYSTLILNYAVLLIEKKDE---EGQSHVXXXXXXXXXXXXXXVDSK--YRALVAIGTLM 520
             ++ +TL +N AV    +      E                    DS+  YR+LVA+GTL+
Sbjct:   705 IAVATLYINIAVFSTSEARNLSIESNQRGLILLEELTGMLRNEKDSEAVYRSLVALGTLV 764

Query:   521 LEGL--VKKIALD-FDVGNIARVAKAS---KETKIAEVGADIE 557
              E +  VK  A + +D+G I +   +S   KE +I  + A+I+
Sbjct:   765 KELVSEVKAAAKEVYDLGAILQAISSSNLGKEPRIKGIVAEIK 807

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0033554 "cellular response to stress" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

POMBASE|SPBC887.04c lub1 "WD repeat protein Lub1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 522 (188.8 bits), Expect = 8.8e-61, Sum P(2) = 8.8e-61
 Identities = 110/252 (43%), Positives = 151/252 (59%)

Query:     1 MPGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDS-HASGLIVSGSEDRFAKIWK 59
             +PG G  S S+D  I+LW   G+ L E+ GHT+ VYS+   H   LI S  EDR  +IWK
Sbjct:   190 IPG-GFASCSNDGVIKLWTSDGEFLYELHGHTSFVYSLTYIHNQQLIASCGEDRTIRIWK 248

Query:    60 DGVCVQSIEHPGC-VWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQ 118
                C+Q I  P   VW    L NGD+V   SDG  RI+TV   +VA +  L+ +   +SQ
Sbjct:   249 GKECLQCITLPTTSVWSVSSLPNGDLVCGSSDGFVRIFTVDKVRVAPTEVLKNFEERVSQ 308

Query:   119 YKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVV 178
             + +  ++VG +K   LPGLE L  PG   G   +VR  ++  AY W  KE +W K+G+VV
Sbjct:   309 FAISSQEVGDIKKGSLPGLEILSKPGKADGDVVMVRVNNDVEAYQWSQKENEWKKIGQVV 368

Query:   179 DGPDDGMNRP-ILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSY 237
             D    G NR  + +G +YDYVFDVD+ DG+   KLPYN ++NPY AA+++L    LP SY
Sbjct:   369 DAV--GNNRKQLFEGKEYDYVFDVDVADGQAPLKLPYNATENPYQAANRFLELNQLPLSY 426

Query:   238 RQQIVEFILQNT 249
               ++V+FI +NT
Sbjct:   427 TDEVVKFIEKNT 438

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006281 "DNA repair" evidence=ISS

GO:0016574 "histone ubiquitination" evidence=NAS

GO:0033554 "cellular response to stress" evidence=IMP

GO:0043130 "ubiquitin binding" evidence=ISO

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IMP

GO:0043234 "protein complex" evidence=NAS

UNIPROTKB|G5EH30 MGCH7_ch7g140 "Ubiquitin homeostasis protein lub1" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 548 (198.0 bits), Expect = 1.2e-55, Sum P(2) = 1.2e-55
 Identities = 171/587 (29%), Positives = 274/587 (46%)

Query:     3 GVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKDGV 62
             G    SA +D  IRLW + GQ + E+ GH + VYS+    SG IVS  EDR  +IWK   
Sbjct:   217 GAEFASAGNDFVIRLWTVRGQQVAELHGHESYVYSLACLPSGEIVSVGEDRTLRIWKGHQ 276

Query:    63 CVQSIEHPGC-VWDAKFL-ENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYK 120
             CVQ+I HP   VW      E GDIVT  SD + RIWT  +D++AD + L+ +   +    
Sbjct:   277 CVQTIVHPAVSVWAVDVCPETGDIVTGASDDIIRIWTRSNDRLADEVTLKHFDEAIKGMA 336

Query:   121 LCRKKVGG-LKLEDLPGLEALQI-PGTNAGQTKVVREGDNGV-AYSWDMKEQKWDKLGEV 177
             + ++ +GG LK ++ PG E LQ   G   G  +V++  D G+ A+ W   + KW+  G V
Sbjct:   337 IPKETMGGDLKNQEFPGPEFLQTNTGKKDGHVQVIKNPDGGLEAHIWSAAQNKWEFYGAV 396

Query:   178 VDGPDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSY 237
             VD P     +    G ++D+VF VDI DG+PT  LPYN  +NPYDAA ++L    LP  Y
Sbjct:   397 VDSPGSSDKKIHHGGKEWDFVFQVDIEDGKPTLPLPYNAGENPYDAARRFLEANELPIGY 456

Query:   238 RQQIVEFILQNT-GQKDFTLNTSFRDPYTGASAYVPGQPSSMSAIPAKPTFKH-IPKKGM 295
              +Q+  FI++ + GQ    +         G+SA  P   +     PA P  KH +P +  
Sbjct:   457 LEQVAAFIVRESKGQNIENIGA-------GSSAAAPTDTT-----PAGP--KHTLPVREY 502

Query:   296 LIFDAAQFDGILKKIMEFNNALLFDLEKKNLSMSELETSRVAAVVKILKD-----TSHYH 350
             ++  +   + ++KKI+  N  L+   +K+  +M+  + S + + V  L+      +S   
Sbjct:   503 VLIPSLNSEPLVKKILSLNADLVKSGDKE-FAMNPTQVSSLQSFVASLQTALQSVSSKVS 561

Query:   351 CSSFADV----------DISLLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLLKHVEN 400
              +   +V          D+  ++ +   W  AM  P +D+LR   +     +   +   +
Sbjct:   562 TTKRVEVQSPGFSVTPQDLDTIINMAVNWQYAMRLPALDLLRCLAVFEQAVTYSPRSSPS 621

Query:   401 QND-VLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSWYSW---LQKNRSEILDA---- 452
               D +L    E  +  P   A+    +RAV N F  +   +    +      IL+A    
Sbjct:   622 YLDAILSAAFETPTGAPINEASAFMAMRAVANSFATAQGRTAAVAVFPRVVSILEAILGI 681

Query:   453 ----FSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVXXXXXXXXXXXXXXVDS 508
                 F       N+N+ ++ S ++ NYAVL   +        +               ++
Sbjct:   682 EAEPFKGPVGPENRNLNIAASVVMHNYAVLAAAQPGILPTEGLSLLVNCIGEVLQNKAET 741

Query:   509 K--YRALVAIGTLMLEGLVKKIALDF-DVGNIARVAKASKETKIAEV 552
                 RALVA+GTL     VK ++    D+G +     A++ ++  EV
Sbjct:   742 TTLVRALVALGTLTQ---VKDLSKTVRDLGGLGWARSAAQRSQDPEV 785

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|A7Z055 PLAA "PLAA protein" [Bos taurus (taxid:9913)]

 Score = 558 (201.5 bits), Expect = 6.4e-54, P = 6.4e-54
 Identities = 130/377 (34%), Positives = 207/377 (54%)

Query:     7 ISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGL-IVSGSEDRFAKIWKDGVCVQ 65
             +S ++D +IR W +TG+ L    GHT  +YSI    +    V+ +EDR  +IWK G C Q
Sbjct:   206 LSCANDASIRRWQITGECLEVFYGHTNYIYSISVFPNCKDFVTTAEDRSLRIWKHGECAQ 265

Query:    66 SIEHPG-CVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRK 124
             +I  P   +W    L+NGDIV   SDG+ R++T   D+ A + E++A+  ELSQ  +  K
Sbjct:   266 TIRLPAQSIWCCCVLDNGDIVVGASDGIIRVFTESEDRTASAEEIKAFERELSQATIDSK 325

Query:   125 K--VGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVV--DG 180
                +G +  E LPG E L  PGT  GQT+++R+G+   AY W + E++W K+G+VV   G
Sbjct:   326 TGDLGDINAEQLPGREHLNEPGTREGQTRLIRDGEKVEAYQWSINERRWIKIGDVVGSSG 385

Query:   181 PDDGMNRPIL-DGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQ 239
                  +  +L +G ++DYVF +D+ +G P+ KLPYN +D+P+ AA  +L K +L   +  
Sbjct:   386 ASQQTSGKVLYEGKEFDYVFSIDVNEGGPSYKLPYNITDDPWLAAYNFLQKNDLNPMFLD 445

Query:   240 QIVEFILQNT-GQKDFTLNTSFRDPYTGASAYVPGQPS-SMSAIPAKPTF----KHIP-- 291
             Q+ +FI+ NT GQ     NTSF DP+TG   YVPG  S S + +PA   F    +++P  
Sbjct:   446 QVAKFIIDNTKGQMLGLGNTSFSDPFTGGGRYVPGSSSGSSNTLPAADPFTGGGRYVPGS 505

Query:   292 -KKGMLIFDAAQFDGILKKIMEFNNAL-LFDLEKKNLSMSELETSRVAAVVKILKDTSHY 349
                G  +     F G        +  + ++  +K+ ++  +   +++   +K L  T+  
Sbjct:   506 ASMGTTMAGVDPFTGNSAYQSAASKTVNIYFPKKEAVTFDQANPTQILGKLKELNGTASE 565

Query:   350 HCSSFADVDISLLLKLL 366
                   + D+ LL K+L
Sbjct:   566 E-KKLTEDDLVLLEKIL 581

GO:0016005 "phospholipase A2 activator activity" evidence=IEA

GO:0006954 "inflammatory response" evidence=IEA

FB|FBgn0024314 Plap "Phospholipase A2 activator protein" [Drosophila melanogaster (taxid:7227)]

 Score = 551 (199.0 bits), Expect = 3.6e-53, P = 3.6e-53
 Identities = 164/583 (28%), Positives = 287/583 (49%)

Query:     6 IISASHDCTIRLWALTGQVLMEMVGHTAIVYSID-SHASG--LIVSGSEDRFAKIWK--- 59
             ++S  +D  +R W   G+ + EM GH+  +YS+  + A G  ++VS  ED   ++W    
Sbjct:   207 LLSCGNDAVLRFWNEDGECVREMNGHSNYIYSMARNEALGDQVVVSCGEDSTLRMWNVIT 266

Query:    60 -DGVCVQSIEHPGC-VWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELS 117
              D +    I HPG  VW    L+NGDIVT CSDGV R+++    + A    L+A+   ++
Sbjct:   267 GDELGAPII-HPGISVWSVTCLQNGDIVTGCSDGVVRVFSHVPARQASEAVLKAFDLVVA 325

Query:   118 QYKL-CRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGV-AYSWDMKEQKWDKLG 175
               K    +++GG+K  DLPG EAL   GT  GQTK+VR  D  V  Y+W +    W+ +G
Sbjct:   326 TRKSQINEEIGGVKKTDLPGPEALLSNGTREGQTKMVRHADGSVKCYTWTLGN--WNLVG 383

Query:   176 EVVD---GPDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKEN 232
             +V     G      + + +G +YD+VF VDI D EP  KLPYNRSD+P+ AA  ++ + +
Sbjct:   384 DVTGATGGTQSNSGKKLHEGKEYDFVFSVDISDTEPPIKLPYNRSDDPWQAAQNFIHRHS 443

Query:   233 LPFSYRQQIVEFILQNTGQKDFTLN--TSFRDPYTGASAYVPGQPSS-MSAIPAKPTFKH 289
             LP +Y  Q+  FI++N+          T ++DP+TG S YVPG  ++ M +      F  
Sbjct:   444 LPQAYLDQVANFIIKNSEGPVLMEQAPTGYQDPFTGGSRYVPGSSNTNMGSGGNVDPFTG 503

Query:   290 IPKKGMLIFDA-AQFD-GILK---KIMEFNNALLFDL-EKKNLSMSELE-TSRVAAVVKI 342
                      +A +Q D   ++   K    +N  +FD  + K +    +E   +++     
Sbjct:   504 ASSYSPASSNAQSQVDVNFVRSGDKHFPVSNYRIFDTCDAKKVLEKMIEFNGKLSLPDGR 563

Query:   343 LKDTSHYHCSSFAD----VDISLL--LKLLKTWPPAMIFPVIDILRMTILHPDGASLLLK 396
             + +         AD    +D++ L  L +L  WP +M FPV+DILR+ + +    S+L  
Sbjct:   564 VGEEVLLAVIKLADQSPELDLTSLEALAILLKWPASMQFPVLDILRLAVRNETLFSVL-- 621

Query:   397 HVENQNDVLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSC 456
                N ++ L  +I ++S +   P  L+  +R + N+  +++    +    +EI+D   + 
Sbjct:   622 --NNSHNFLATVIPQLSGSA--PNQLMV-VRCLANIMSHAAGRQNVMSRLAEIIDLVGAI 676

Query:   457 YSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVXXXXXXXXXXXXXXVDSKYRALVAI 516
              + S  N+Q++ +T  LN  +       +    HV              +++ YR++ AI
Sbjct:   677 KTGS-ANLQIAVATFYLNLTISQTLDVAKSEVCHVVTSGIVELLKWAKDLEACYRSMQAI 735

Query:   517 GTLML-----EGLVKKIALDFDVGNIARVAKASKETKIAEVGA 554
             G L       E + + +++D+ +  +  +    ++   ++V +
Sbjct:   736 GNLTTTSCGQETIAQVVSVDYVMDKLRELTITPQDKNFSKVNS 778

GO:0045169 "fusome" evidence=NAS

GO:0016005 "phospholipase A2 activator activity" evidence=ISS;NAS

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9Y263 PLAA "Phospholipase A-2-activating protein" [Homo sapiens (taxid:9606)]

 Score = 547 (197.6 bits), Expect = 1.3e-52, P = 1.3e-52
 Identities = 126/376 (33%), Positives = 202/376 (53%)

Query:     7 ISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGL-IVSGSEDRFAKIWKDGVCVQ 65
             +S ++D +IR W +TG+ L    GHT  +YSI    +    V+ +EDR  +IWK G C Q
Sbjct:   206 LSCANDASIRRWQITGECLEVYYGHTNYIYSISVFPNCRDFVTTAEDRSLRIWKHGECAQ 265

Query:    66 SIEHPG-CVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRK 124
             +I  P   +W    L+NGDIV   SDG+ R++T   D+ A + E++A+  ELS   +  K
Sbjct:   266 TIRLPAQSIWCCCVLDNGDIVVGASDGIIRVFTESEDRTASAEEIKAFEKELSHATIDSK 325

Query:   125 K--VGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVV--DG 180
                +G +  E LPG E L  PGT  GQT+++R+G+   AY W + E +W K+G+VV   G
Sbjct:   326 TGDLGDINAEQLPGREHLNEPGTREGQTRLIRDGEKVEAYQWSVSEGRWIKIGDVVGSSG 385

Query:   181 PDDGMNRPIL-DGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQ 239
              +   +  +L +G ++DYVF +D+ +G P+ KLPYN SD+P+  A  +L K +L   +  
Sbjct:   386 ANQQTSGKVLYEGKEFDYVFSIDVNEGGPSYKLPYNTSDDPWLTAYNFLQKNDLNPMFLD 445

Query:   240 QIVEFILQNT-GQKDFTLNTSFRDPYTGASAYVPGQPSSMSAIPAKPTF----KHIP--- 291
             Q+ +FI+ NT GQ     N SF DP+TG   YVPG   S + +P    F    +++P   
Sbjct:   446 QVAKFIIDNTKGQMLGLGNPSFSDPFTGGGRYVPGSSGSSNTLPTADPFTGAGRYVPGSA 505

Query:   292 KKGMLIFDAAQFDGILKKIMEFNNAL-LFDLEKKNLSMSELETSRVAAVVKILKDTSHYH 350
               G  +     F G        +  + ++  +K+ ++  +   +++   +K L  T+   
Sbjct:   506 SMGTTMAGVDPFTGNSAYRSAASKTMNIYFPKKEAVTFDQANPTQILGKLKELNGTAPEE 565

Query:   351 CSSFADVDISLLLKLL 366
                  + D+ LL K+L
Sbjct:   566 -KKLTEDDLILLEKIL 580

GO:0006954 "inflammatory response" evidence=IEA

GO:0016005 "phospholipase A2 activator activity" evidence=IEA

GO:0070062 "extracellular vesicular exosome" evidence=IDA

GO:0006644 "phospholipid metabolic process" evidence=TAS

GO:0007165 "signal transduction" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	563
pfam08324	263	pfam08324, PUL, PUL domain	3e-64
pfam09070	116	pfam09070, PFU, PFU (PLAA family ubiquitin binding	8e-50
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-16
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-14
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-14
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-14
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-06
smart00320	40	smart00320, WD40, WD40 repeats	9e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-04
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.003

>gnl|CDD|219795 pfam08324, PUL, PUL domain

 Score =  210 bits (537), Expect = 3e-64
 Identities = 100/273 (36%), Positives = 148/273 (54%), Gaps = 14/273 (5%)

Query: 288 KHIPKKGMLIFDAAQFDGILKKIMEFNNALLFDLEKKNLSMSELETSRVAAVVKILKDTS 347
           K  P K  L F  A  D ILKK+ EFN+ L        L +S+ E + + +++  LK++S
Sbjct: 1   KIFPVKNYLTFKTANLDKILKKLKEFNSKL-----SNELKLSDDELNAIESLLSELKESS 55

Query: 348 HYHCSSFADVDISLLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLME 407
                +  +     LLK+LK+WP A  FP +D+LR+ +L+P  A+LL      +   L+ 
Sbjct: 56  TA---ALLEALTIYLLKILKSWPEANRFPALDLLRLLVLNPPAAALLC--DAFEIADLIS 110

Query: 408 MIEKVSSNPTLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSS-NKNVQL 466
            +  + SN   PA LL  +R + NLF NS+  + L  +   ILD  S   SS  NKN+Q+
Sbjct: 111 TLILLGSNSKNPALLLLTLRLLANLFSNSTGRNLLLSHDDSILDLISVLKSSLLNKNLQI 170

Query: 467 SYSTLILNYAVLLIEKK-DEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLMLEGLV 525
           + +TL+LN AVLL+E   D E    +LS+ LE   EE  + ++ YR LVA+GTL      
Sbjct: 171 ALATLLLNLAVLLLENNADVEALPELLSSILEALSEEESDEEALYRLLVALGTLASGDPT 230

Query: 526 KKIALDF-DVGNIA-RVAKASKETKIAEVGADI 556
                   +V NIA +  +ASKE +  EVG+D+
Sbjct: 231 AVQLAKSLNVSNIATKKKRASKEKRFKEVGSDL 263

The PUL (PLAP, Ufd3p and Lub1p) domain is a novel alpha-helical Ub-associated domain. It directly binds to Cdc48, a chaperone-like AAA ATPase that collects ubiquitylated substrates. Length = 263

>gnl|CDD|204121 pfam09070, PFU, PFU (PLAA family ubiquitin binding)

 Score =  167 bits (425), Expect = 8e-50
 Identities = 58/118 (49%), Positives = 75/118 (63%), Gaps = 5/118 (4%)

Query: 141 QIPGTNAGQTKVVREGDNGV-AYSWDMKEQKWDKLGEVVDGPDDGMNRP--ILDGIQYDY 197
           Q PG   GQ K+V+ GD  V AY W   E +W K+G+VVDGP  G +    + +G +YDY
Sbjct: 1   QRPGKKEGQVKMVKNGDGKVEAYQW--SEGRWVKIGDVVDGPASGASSGKVLFEGKEYDY 58

Query: 198 VFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQQIVEFILQNTGQKDFT 255
           VFDVDI DG P  KLPYN  DNPY+AA+K++ +  LP SY  Q+V FI++NT      
Sbjct: 59  VFDVDIEDGGPPLKLPYNVGDNPYEAAEKFIARNELPQSYLDQVVNFIIKNTKGVTLQ 116

This domain is found N terminal to pfam08324 and binds to ubiquitin. Length = 116

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 77.8 bits (192), Expect = 9e-16
 Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 6/103 (5%)

Query: 6   IISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIW--KDG 61
           + + S D TI++W L TG++L  + GHT  V  + + A G  + SGS D+  ++W  + G
Sbjct: 24  LATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG 83

Query: 62  VCVQSIE-HPGCVWDAKFLENGDIVTACS-DGVTRIWTVHSDK 102
            CV+++  H   V    F  +G I+++ S D   ++W V + K
Sbjct: 84  ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK 126

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 74.3 bits (183), Expect = 1e-14
 Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 6/109 (5%)

Query: 6   IISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIW--KDG 61
           + S S D TIRLW L TG+ +  + GHT+ V S+     G ++ S S D+  K+W  + G
Sbjct: 66  LASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG 125

Query: 62  VCVQSIE-HPGCVWDAKFLENGDIVTACS-DGVTRIWTVHSDKVADSLE 108
            C+ ++  H   V    F  +G  V + S DG  ++W + + K   +L 
Sbjct: 126 KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLT 174

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 6/109 (5%)

Query: 6   IISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSID-SHASGLIVSGSEDRFAKIW--KDG 61
           + S+S D TI++W + TG+ L  + GHT  V S+  S     + S S+D   K+W  + G
Sbjct: 108 LSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG 167

Query: 62  VCVQSIE-HPGCVWDAKFLENG-DIVTACSDGVTRIWTVHSDKVADSLE 108
            CV ++  H G V    F  +G  ++++ SDG  ++W + + K   +L 
Sbjct: 168 KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR 216

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 72.0 bits (177), Expect = 6e-14
 Identities = 35/100 (35%), Positives = 53/100 (53%), Gaps = 6/100 (6%)

Query: 3   GVGIISASHDCTIRLW-ALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIW-- 58
           G  ++S+S D TI+LW   TG+ L  + GH   V S+     G L+ SGSED   ++W  
Sbjct: 189 GEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDL 248

Query: 59  KDGVCVQSIE-HPGCVWDAKFLENG-DIVTACSDGVTRIW 96
           + G CVQ++  H   V    +  +G  + +  +DG  RIW
Sbjct: 249 RTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIW 288

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 56.6 bits (137), Expect = 9e-09
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 6   IISASHDCTIRLW-ALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK 59
           + S S D TIR+W   TG+ +  + GHT  V S+     G  + SGS D   +IW 
Sbjct: 234 LASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 5/84 (5%)

Query: 30  GHTAIVYSIDSHASG-LIVSGSEDRFAKIW--KDGVCVQSIE-HPGCVWDAKFLENGD-I 84
           GHT  V  +     G L+ +GS D   K+W  + G  +++++ H G V D     +G  +
Sbjct: 7   GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYL 66

Query: 85  VTACSDGVTRIWTVHSDKVADSLE 108
            +  SD   R+W + + +   +L 
Sbjct: 67  ASGSSDKTIRLWDLETGECVRTLT 90

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 7/124 (5%)

Query: 6   IISASHDCTIRLWAL-TGQVLMEMV-GHTAIVYSIDSHASGLIVSGSEDRFAKIWK---D 60
           I S S D TIRLW L TG++L   + GH+  V S  S    L+ SGS D   ++W     
Sbjct: 214 IASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSS 273

Query: 61  GVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQ 118
              ++++  H   V    F  +G  + +  SDG  R+W + + K+  SL L+ +   +S 
Sbjct: 274 SSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSS 333

Query: 119 YKLC 122
               
Sbjct: 334 LSFS 337

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 7/104 (6%)

Query: 6   IISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIW--KD 60
              +S D TI+LW L TG+ L  + GHT  V S+     G  LI SGS D   ++W    
Sbjct: 171 ASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST 230

Query: 61  GVCVQSI--EHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDK 102
           G  ++S    H   V  +   +   + +  SDG  R+W + S  
Sbjct: 231 GKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSS 274

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 39.6 bits (93), Expect = 9e-05
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 21 TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK 59
          +G++L  + GHT  V S+     G  + SGS+D   K+W 
Sbjct: 1  SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 22 GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK 59
          G++L  + GHT  V S+     G L+ SGS+D   ++W 
Sbjct: 1  GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 40.1 bits (92), Expect = 0.003
 Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 5/100 (5%)

Query: 6   IISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVS-GSEDRFAKIWKD---G 61
           +   S D TIRLW L     ++ +   + V S+     G +VS GS D   ++W      
Sbjct: 344 VSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGS 403

Query: 62  VCVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHS 100
           +      H   V    F  +G  + +  SD   R+W + +
Sbjct: 404 LLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	563
KOG0301	745	consensus Phospholipase A2-activating protein (con	100.0
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	100.0
PF09070	116	PFU: PFU (PLAA family ubiquitin binding); InterPro	99.93
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.92
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.9
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.9
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.9
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.88
KOG0286	343	consensus G-protein beta subunit [General function	99.88
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.87
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.87
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.86
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.85
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.85
KOG0266	456	consensus WD40 repeat-containing protein [General	99.82
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.82
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.82
KOG0266	456	consensus WD40 repeat-containing protein [General	99.82
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.81
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.81
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.79
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.79
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.79
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.79
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.79
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.79
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.78
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.78
PTZ00421	493	coronin; Provisional	99.78
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.78
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.77
PLN00181	793	protein SPA1-RELATED; Provisional	99.77
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.75
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.75
KOG0645	312	consensus WD40 repeat protein [General function pr	99.75
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.75
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.74
PTZ00420	568	coronin; Provisional	99.74
KOG0645	312	consensus WD40 repeat protein [General function pr	99.74
KOG0643	327	consensus Translation initiation factor 3, subunit	99.74
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.73
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.73
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.73
KOG0286	343	consensus G-protein beta subunit [General function	99.73
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.72
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.72
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.72
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.72
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.71
PTZ00420	568	coronin; Provisional	99.71
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.7
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.7
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.7
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.69
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.69
KOG0296	399	consensus Angio-associated migratory cell protein	99.68
PLN00181	793	protein SPA1-RELATED; Provisional	99.68
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.67
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.67
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.67
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.67
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.67
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.67
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.67
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.67
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.67
PTZ00421	493	coronin; Provisional	99.66
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.65
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.65
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.65
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.65
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.65
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.64
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.63
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.62
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.62
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.62
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.61
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.61
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.61
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.6
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.6
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.59
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.57
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.56
KOG0289	506	consensus mRNA splicing factor [General function p	99.56
KOG0267	825	consensus Microtubule severing protein katanin p80	99.56
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.55
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.55
KOG1273	405	consensus WD40 repeat protein [General function pr	99.55
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.55
KOG0639	705	consensus Transducin-like enhancer of split protei	99.54
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.54
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.53
KOG0296	399	consensus Angio-associated migratory cell protein	99.53
KOG0646	476	consensus WD40 repeat protein [General function pr	99.53
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.52
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.5
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.48
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.48
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.48
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.47
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.47
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.46
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.46
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.42
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.41
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.4
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.4
KOG0289	506	consensus mRNA splicing factor [General function p	99.4
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.4
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.39
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.39
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.39
KOG0267	825	consensus Microtubule severing protein katanin p80	99.37
KOG2048	691	consensus WD40 repeat protein [General function pr	99.36
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.34
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.33
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.33
KOG0649	325	consensus WD40 repeat protein [General function pr	99.33
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.33
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.32
KOG0643	327	consensus Translation initiation factor 3, subunit	99.32
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.32
KOG0646	476	consensus WD40 repeat protein [General function pr	99.31
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.31
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.3
KOG0641	350	consensus WD40 repeat protein [General function pr	99.3
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.28
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.28
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.27
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.27
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.27
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.26
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.26
KOG0639	705	consensus Transducin-like enhancer of split protei	99.26
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.25
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.25
KOG0641	350	consensus WD40 repeat protein [General function pr	99.23
KOG2096	420	consensus WD40 repeat protein [General function pr	99.23
KOG2096	420	consensus WD40 repeat protein [General function pr	99.22
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.21
KOG1274	933	consensus WD40 repeat protein [General function pr	99.19
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.16
KOG0649	325	consensus WD40 repeat protein [General function pr	99.15
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.13
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.07
KOG1274	933	consensus WD40 repeat protein [General function pr	99.06
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.06
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.06
KOG2048	691	consensus WD40 repeat protein [General function pr	99.04
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.03
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.03
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.03
KOG1188	376	consensus WD40 repeat protein [General function pr	99.02
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	98.99
KOG1063	764	consensus RNA polymerase II elongator complex, sub	98.98
KOG4328	498	consensus WD40 protein [Function unknown]	98.98
KOG0303	472	consensus Actin-binding protein Coronin, contains	98.98
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	98.98
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	98.97
KOG1310	758	consensus WD40 repeat protein [General function pr	98.97
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	98.95
KOG1539	910	consensus WD repeat protein [General function pred	98.95
KOG1063	764	consensus RNA polymerase II elongator complex, sub	98.95
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	98.94
KOG4227	609	consensus WD40 repeat protein [General function pr	98.93
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	98.92
KOG2106	626	consensus Uncharacterized conserved protein, conta	98.91
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	98.91
KOG0771	398	consensus Prolactin regulatory element-binding pro	98.91
KOG1273	405	consensus WD40 repeat protein [General function pr	98.91
KOG0290	364	consensus Conserved WD40 repeat-containing protein	98.9
KOG1539	910	consensus WD repeat protein [General function pred	98.9
KOG2055	514	consensus WD40 repeat protein [General function pr	98.89
KOG1188	376	consensus WD40 repeat protein [General function pr	98.89
KOG2055	514	consensus WD40 repeat protein [General function pr	98.88
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	98.85
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	98.84
KOG2110	391	consensus Uncharacterized conserved protein, conta	98.84
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	98.84
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	98.82
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	98.79
COG2319	466	FOG: WD40 repeat [General function prediction only	98.78
PRK01742	429	tolB translocation protein TolB; Provisional	98.78
KOG2111	346	consensus Uncharacterized conserved protein, conta	98.77
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	98.77
KOG0644	1113	consensus Uncharacterized conserved protein, conta	98.75
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	98.75
KOG0290	364	consensus Conserved WD40 repeat-containing protein	98.74
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	98.72
KOG1310	758	consensus WD40 repeat protein [General function pr	98.7
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.69
KOG4328	498	consensus WD40 protein [Function unknown]	98.69
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	98.68
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.68
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	98.68
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	98.67
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.65
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	98.63
KOG2110	391	consensus Uncharacterized conserved protein, conta	98.58
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	98.54
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	98.53
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	98.52
KOG0771	398	consensus Prolactin regulatory element-binding pro	98.51
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.49
COG2319	466	FOG: WD40 repeat [General function prediction only	98.48
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.45
PRK11028	330	6-phosphogluconolactonase; Provisional	98.44
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	98.44
KOG4227	609	consensus WD40 repeat protein [General function pr	98.44
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.4
KOG1334	559	consensus WD40 repeat protein [General function pr	98.39
KOG2139	445	consensus WD40 repeat protein [General function pr	98.38
KOG2321	703	consensus WD40 repeat protein [General function pr	98.36
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	98.35
PRK05137	435	tolB translocation protein TolB; Provisional	98.32
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	98.31
KOG2139	445	consensus WD40 repeat protein [General function pr	98.31
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.31
PRK11028	330	6-phosphogluconolactonase; Provisional	98.3
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	98.27
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.25
PRK01742	429	tolB translocation protein TolB; Provisional	98.22
KOG1963	792	consensus WD40 repeat protein [General function pr	98.22
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	98.21
PRK03629	429	tolB translocation protein TolB; Provisional	98.2
PRK02889	427	tolB translocation protein TolB; Provisional	98.19
KOG3881	412	consensus Uncharacterized conserved protein [Funct	98.16
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.16
PRK04922	433	tolB translocation protein TolB; Provisional	98.15
PRK05137	435	tolB translocation protein TolB; Provisional	98.1
KOG2111	346	consensus Uncharacterized conserved protein, conta	98.08
KOG3881	412	consensus Uncharacterized conserved protein [Funct	98.07
PRK04922	433	tolB translocation protein TolB; Provisional	98.06
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.05
PRK02889	427	tolB translocation protein TolB; Provisional	98.0
PRK03629	429	tolB translocation protein TolB; Provisional	97.98
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	97.96
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	97.93
KOG0280	339	consensus Uncharacterized conserved protein [Amino	97.93
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	97.91
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	97.79
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	97.79
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.74
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.72
KOG4547	541	consensus WD40 repeat-containing protein [General	97.7
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.7
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	97.69
PRK00178	430	tolB translocation protein TolB; Provisional	97.69
KOG4714	319	consensus Nucleoporin [Nuclear structure]	97.68
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	97.67
KOG1963	792	consensus WD40 repeat protein [General function pr	97.66
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	97.65
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.65
KOG0280	339	consensus Uncharacterized conserved protein [Amino	97.6
PRK04792	448	tolB translocation protein TolB; Provisional	97.6
KOG4547	541	consensus WD40 repeat-containing protein [General	97.58
KOG2695	425	consensus WD40 repeat protein [General function pr	97.56
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.55
PRK01029	428	tolB translocation protein TolB; Provisional	97.53
KOG2695	425	consensus WD40 repeat protein [General function pr	97.52
PRK04792	448	tolB translocation protein TolB; Provisional	97.51
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.46
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.45
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	97.44
KOG4714	319	consensus Nucleoporin [Nuclear structure]	97.43
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.42
PRK00178	430	tolB translocation protein TolB; Provisional	97.42
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.39
KOG1334	559	consensus WD40 repeat protein [General function pr	97.39
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.36
KOG2321	703	consensus WD40 repeat protein [General function pr	97.36
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	97.33
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	97.29
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	97.22
KOG1409	404	consensus Uncharacterized conserved protein, conta	97.21
COG4946	668	Uncharacterized protein related to the periplasmic	97.19
KOG4532	344	consensus WD40-like repeat containing protein [Gen	97.18
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.12
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.12
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.08
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	97.02
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.94
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.92
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	96.91
KOG4532	344	consensus WD40-like repeat containing protein [Gen	96.8
PRK01029	428	tolB translocation protein TolB; Provisional	96.76
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	96.75
KOG2315	566	consensus Predicted translation initiation factor	96.72
COG4946	668	Uncharacterized protein related to the periplasmic	96.7
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	96.52
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	96.32
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	96.32
KOG2315	566	consensus Predicted translation initiation factor	96.31
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	96.26
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	96.23
KOG1409	404	consensus Uncharacterized conserved protein, conta	96.22
KOG2314	698	consensus Translation initiation factor 3, subunit	96.05
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	96.05
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	96.05
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	96.04
PRK04043	419	tolB translocation protein TolB; Provisional	96.01
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	95.96
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	95.96
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	95.93
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	95.76
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	95.61
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	95.55
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	95.52
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	95.41
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	95.24
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	95.2
PRK04043	419	tolB translocation protein TolB; Provisional	95.03
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	94.97
KOG3621	726	consensus WD40 repeat-containing protein [General	94.87
KOG1912	1062	consensus WD40 repeat protein [General function pr	94.84
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	94.68
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	94.52
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	94.4
KOG2444	238	consensus WD40 repeat protein [General function pr	94.32
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	94.06
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	94.03
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	93.67
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	93.57
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	93.49
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	93.16
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	92.79
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	92.55
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	92.45
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	91.85
KOG2395	644	consensus Protein involved in vacuole import and d	91.78
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	91.68
KOG2041	1189	consensus WD40 repeat protein [General function pr	91.61
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	91.44
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	91.22
KOG2395	644	consensus Protein involved in vacuole import and d	90.68
KOG1912	1062	consensus WD40 repeat protein [General function pr	90.52
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	90.34
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	90.12
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	89.45
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	89.0
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	88.95
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	88.38
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	88.22
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	88.0
KOG2314	698	consensus Translation initiation factor 3, subunit	87.59
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	87.44
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	86.55
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	85.99
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	85.87
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	85.7
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	85.43
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	84.57
PRK02888	635	nitrous-oxide reductase; Validated	84.45
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	84.22
KOG3621	726	consensus WD40 repeat-containing protein [General	83.62
PHA02713	557	hypothetical protein; Provisional	83.31
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	82.9
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	82.8
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	82.78
PRK02888	635	nitrous-oxide reductase; Validated	82.39
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	82.33
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	81.77
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	81.69
KOG1008	783	consensus Uncharacterized conserved protein, conta	81.59

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=100.00  E-value=5.8e-96  Score=743.52  Aligned_cols=535  Identities=42%  Similarity=0.672  Sum_probs=458.3

Q ss_pred             CCCCEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCC-CeEEEEeCCCcEEEEcCCceeEEEecCC-cEEEEEE
Q 008510            1 MPGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHAS-GLIVSGSEDRFAKIWKDGVCVQSIEHPG-CVWDAKF   78 (563)
Q Consensus         1 ~~g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~-g~l~s~s~D~tvriWd~~~~~~~l~h~~-~V~~v~~   78 (563)
                      ||+..|+||||||.||+|+++|+++.++.||+++||+++..++ +.++|+|+||++|||+.++|.|.|+||+ .||++++
T Consensus       188 l~~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~~q~I~lPttsiWsa~~  267 (745)
T KOG0301|consen  188 LDDSHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDECVQVITLPTTSIWSAKV  267 (745)
T ss_pred             ecCCCeEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCceEEEEecCccceEEEEE
Confidence            5777899999999999999999999999999999999995554 4999999999999999779999999998 9999999


Q ss_pred             ccCCcEEEEeCCCcEEEEEcCCCceeceeeeccccccc-ceeEEeeccCCceEEEeCCCCceeeecccCCCeEEEEecCC
Q 008510           79 LENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASEL-SQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGD  157 (563)
Q Consensus        79 ~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg~~~l~~~~~  157 (563)
                      .+||+|++||+||.||||+.+..|.++.+.+++|+..+ .+........|.|+.-++|+.+.+..+|++||++.+++.++
T Consensus       268 L~NgDIvvg~SDG~VrVfT~~k~R~As~evl~afd~~v~s~~~~kt~~~g~v~~~~lPg~e~L~spGt~dGq~~~Vr~~~  347 (745)
T KOG0301|consen  268 LLNGDIVVGGSDGRVRVFTVDKDRKASDEVLKAFDAEVVSQISSKTEEVGGVKKDDLPGLEILKSPGTRDGQTKVVRDGE  347 (745)
T ss_pred             eeCCCEEEeccCceEEEEEecccccCCHHHHHHHHHHHHhhhhhhhhhhCccccccCCchhhhcCCCCCCCcEEEEEcCC
Confidence            99999999999999999999999999999999999888 55555666778999999999999999999999999999999


Q ss_pred             CeEEEEEecccceEEE--eCcEeeCCCCCCCceeecCcccCcEEEEEcCCCCeeeeecCCCCCChhHHHHHHHHhcCCCc
Q 008510          158 NGVAYSWDMKEQKWDK--LGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPF  235 (563)
Q Consensus       158 ~~~~~~wd~~~~~w~~--~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~~dg~~~~~~~~n~~~~~w~~a~~f~~~~~l~~  235 (563)
                      +..+|+|......|.+  +|++++..+.. +|.+++|++|||||+||++||+|++++|||.++|||.+|++|+++|+||.
T Consensus       348 ~v~ayqws~~e~r~ikdvig~~~~~~~~s-~K~l~EGKeYDyvF~VDi~dGep~~kLPyN~sdnPy~AA~~FL~k~~Lp~  426 (745)
T KOG0301|consen  348 NVEAYQWSNGEWRWIKDVIGEVVAAQGNS-GKVLHEGKEYDYVFDVDIGDGEPPYKLPYNVSDNPYQAAQKFLEKNQLPV  426 (745)
T ss_pred             cceeEEeecccceeeccccccccccCCCC-cceeecccccceEEEEEccCCCCceecCcCCCCCHHHHHHHHHHHccCCH
Confidence            9999999987777776  56666655443 69999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHhcCCCC-cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc-------e--------eeeccceEEec
Q 008510          236 SYRQQIVEFILQNTGQKD-FTLNTSFRDPYTGASAYVPGQPSSMSAIPAKPTF-------K--------HIPKKGMLIFD  299 (563)
Q Consensus       236 ~~~~~v~~fi~~n~~~~~-~~~~~~~~~p~~~~~~y~p~~~~~~~~~~~~~~~-------~--------~~P~~~~~~f~  299 (563)
                      +|+|||++||++|+.|.+ ....+.|.|||||++|||||++++ +++|..|..       .        ++|.+.|..|+
T Consensus       427 sy~dqvv~FI~kNt~g~~l~~~~~~~~dpftg~~ryvp~SSnt-~~dpft~~~~yv~~~~n~~~~~~~y~~p~~~~~~~~  505 (745)
T KOG0301|consen  427 SYRDQVVKFILKNTDGLSLFAANPSYEDPFTGGGRYVPGSSNT-AADPFTGSGRYVPSSSNPLTGDSGYSLPVKKQRIFD  505 (745)
T ss_pred             HHHHHHHHHHHHhcccccccccCCcccCccCCCcccccccccc-cCCCCCCccccccccccccccccccccchhheeecc
Confidence            999999999999998887 455666999999999999966553 334433322       2        58888888888


Q ss_pred             ccChHHHHHHHHHHHHhhhcccccccCCCCHHHHHHHHHHHHHhhcCCCccCCCCchhhHHHHHHHHhcCCCCCccchhc
Q 008510          300 AAQFDGILKKIMEFNNALLFDLEKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDISLLLKLLKTWPPAMIFPVID  379 (563)
Q Consensus       300 ~~n~~~l~~Kl~efn~~~~~~~~~~~~~l~~~el~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~Wp~~~~fP~lD  379 (563)
                      ..|..      +|||+          .+++++|+..+++++..++.++.|+  ....+.+.+|..++ +||.+++||+||
T Consensus       506 ~~~~~------~~~N~----------~kl~~d~~~~~eeil~li~~s~~~~--~e~~~~l~~l~~l~-~wp~~~~fPalD  566 (745)
T KOG0301|consen  506 TLNPK------KELNA----------PKLNPDEINGLEEILSLIKNSSHYS--SEVLQSLLALAILL-QWPVEMMFPALD  566 (745)
T ss_pred             ccCch------hhhcC----------cccCcchhhhHHHHHHhhcCCCCcc--chhHHHHHHHHHHh-cCCHHHhhhHHH
Confidence            87776      56662          3566889999999999888776443  43445555555555 999999999999


Q ss_pred             HHHHhhcCCCchhhhhhcccchhhHHHHHHHhhcCCCCCcchHHHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhccC
Q 008510          380 ILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSS  459 (563)
Q Consensus       380 L~Rl~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~~  459 (563)
                      ++|+++.|+..+++++.. +.+++++..++....   ..++|+||++|+|||+|.|+.++++++++++.+++.+..+...
T Consensus       567 ilRl~v~h~~~~s~~~~~-~~~~~~~~~li~~~~---~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~i~~~~~~~~s~  642 (745)
T KOG0301|consen  567 ILRLAVKHHSSNSLFCDR-EEGQNLVGTLIPILN---ADPANQLLVVRCLANLFSNPAGRELFMSRLESILDPVIEASSL  642 (745)
T ss_pred             HHHHHHhccchhhhhhhh-hhhhHHHHhhhcccc---cchhHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhhhhhhhcc
Confidence            999999999999999843 344566677765554   4579999999999999999999999999999999999999888


Q ss_pred             CChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHHhhhhcccChhHHHHHHHHHhhhhc-hhHHHHHhhhcChHHHH
Q 008510          460 SNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLML-EGLVKKIALDFDVGNIA  538 (563)
Q Consensus       460 ~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~Ea~~R~l~AlG~l~~-~~~~~~~~~~~~~~~~~  538 (563)
                      .+||+++|+||++||||+.+++...+.+..+++..++..+.....|-||.||+|||||||++ +..++++|+..+++.++
T Consensus       643 ~~knl~ia~atlaln~sv~l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~~A~~~~v~sia  722 (745)
T KOG0301|consen  643 SNKNLQIALATLALNYSVLLIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQLAKNRSVDSIA  722 (745)
T ss_pred             cchhHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHHHHHhcCHHHHH
Confidence            89999999999999999999998776555555554444443456778999999999999999 55899999999999999


Q ss_pred             HHHhh-cCChhHHHHHHHHHHHh
Q 008510          539 RVAKA-SKETKIAEVGADIELLA  560 (563)
Q Consensus       539 ~~~~~-~~~~~i~~~~~ei~~ll  560 (563)
                      +++++ ...++.+++++.|++++
T Consensus       723 ~~~~~~~~~~~~k~~a~~il~~~  745 (745)
T KOG0301|consen  723 KKLKEAVSNPSGKNIARDILSLL  745 (745)
T ss_pred             HHHHHhccCchhhHHHHHHHhcC
Confidence            99998 55667888999877664

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=100.00  E-value=1.7e-47  Score=379.29  Aligned_cols=261  Identities=39%  Similarity=0.581  Sum_probs=206.9

Q ss_pred             eeeeccceEEecccChHHHHHHHHHHHHhhhcccccccCCCCHHHHHHHHHHHHHhhcCCCccCCCCchhhHHHHHHHHh
Q 008510          288 KHIPKKGMLIFDAAQFDGILKKIMEFNNALLFDLEKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDISLLLKLLK  367 (563)
Q Consensus       288 ~~~P~~~~~~f~~~n~~~l~~Kl~efn~~~~~~~~~~~~~l~~~el~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~  367 (563)
                      ||||+++|+.|+++|++++++||+|||+++     +++.+|+|+|+..|++++..+++.+.+++  ....+..++.+++.
T Consensus         1 k~~P~~~yl~f~~~n~~~i~~KL~efn~~~-----~~~~~l~~~el~~L~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~   73 (268)
T PF08324_consen    1 KYFPQKSYLYFKQANLDKILKKLKEFNEKL-----QKELKLSEEELESLESLLSALKSTSAYHS--DLSAWLILLLKILL   73 (268)
T ss_dssp             SS-S--S--------HHHHHHHHHHHHTTS-----HCCT-S-HHHHHHHHHHHCCCCCC-SS-----HHHHHHHHHHHHC
T ss_pred             CCCCCCCeeeeccCCHHHHHHHHHHHHHhC-----ccccCCCHHHHHHHHHHHHHhcCCCcccc--chhHHHHHHHHHHH
Confidence            689999999999999999999999999986     46899999999999999987776655443  34566777888888


Q ss_pred             cCCCCCccchhcHHHHhhcCCCchhhhhhcccchhhHHHHHHHhhcCCCCCcchHHHHHHHHHhhcCCCccHHHHHhhHH
Q 008510          368 TWPPAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSWYSWLQKNRS  447 (563)
Q Consensus       368 ~Wp~~~~fP~lDL~Rl~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~lR~l~N~f~~~~~~~~~~~~~~  447 (563)
                      +||++++||+|||+|++++||+++++++.......+.+..++..... +..++|+||++|++||+|.|+.|+++++++..
T Consensus        74 ~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~  152 (268)
T PF08324_consen   74 SWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSS-SSPPANQMLALRLLANLFSHPPGRQLLLSHFD  152 (268)
T ss_dssp             CS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTT-TSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHH
T ss_pred             hCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccC-CCcHHHHHHHHHHHHHhhCCCccHHHHHhccc
Confidence            99999999999999999999999998873221112344444444332 35679999999999999999999999999999


Q ss_pred             -HHHHHhhhhccCC---ChhHHHHHHHHHHHHHhhhhhcC-CchhhhHHHHHHHHhhhhcccChhHHHHHHHHHhhhhc-
Q 008510          448 -EILDAFSSCYSSS---NKNVQLSYSTLILNYAVLLIEKK-DEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLML-  521 (563)
Q Consensus       448 -~il~~~~~~~~~~---~k~~~~a~atl~~N~s~~~~~~~-~~~~~~~l~~~~~~~l~~~~~~~Ea~~R~l~AlG~l~~-  521 (563)
                       .|++.+.....+.   +||+|+|+||++||||+++++.+ +.+.+.++++.+.+++..++.|+|++||+|+|||||++ 
T Consensus       153 ~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~  232 (268)
T PF08324_consen  153 SSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSS  232 (268)
T ss_dssp             TCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCC
T ss_pred             chHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhcc
Confidence             9999998887765   99999999999999999999998 67788899999999776677899999999999999999 


Q ss_pred             hhHHHHHhhhcChHHHHHHHhh-cCChhHHHHHHHH
Q 008510          522 EGLVKKIALDFDVGNIARVAKA-SKETKIAEVGADI  556 (563)
Q Consensus       522 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~ei  556 (563)
                      ++...++++.+++.+++.+.+. ++++||++|++||
T Consensus       233 ~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ei  268 (268)
T PF08324_consen  233 SDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAAEI  268 (268)
T ss_dssp             SHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred             ChhHHHHHHHcChHHHHHHHHhcccchHHHHHhccC
Confidence            6688889999999999877765 8899999999997

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF09070 PFU: PFU (PLAA family ubiquitin binding); InterPro: IPR015155 The PFU (for PLAA family ubiquitin binding domain) is an ubiquitin binding domain with no homology to several known ubiquitin binding domains (e

Probab=99.93  E-value=1.6e-26  Score=191.13  Aligned_cols=110  Identities=53%  Similarity=0.963  Sum_probs=60.3

Q ss_pred             ecccCCCeEEEEecC-CCeEEEEEecccceEEEeCcEeeCCCC--CCCceeecCcccCcEEEEEcCCCCeeeeecCCCCC
Q 008510          142 IPGTNAGQTKVVREG-DNGVAYSWDMKEQKWDKLGEVVDGPDD--GMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSD  218 (563)
Q Consensus       142 ~~g~~dg~~~l~~~~-~~~~~~~wd~~~~~w~~~g~v~~~~~~--~~~~~~~~g~~~d~v~~vd~~dg~~~~~~~~n~~~  218 (563)
                      .+|.++|+++|++.+ +...+|+|+  .+.|.++|+|+++++.  ..++..|+|++|||||+|++++|.+.+++|||.++
T Consensus         2 ~~G~keGq~~~vr~~~g~veay~Ws--~~~W~kiG~Vv~~~~~~~~~~k~~~~Gk~YDyVf~Vdi~dg~~~lkLpyN~~d   79 (116)
T PF09070_consen    2 QPGKKEGQVKMVRNGNGKVEAYQWS--EGKWEKIGEVVGGPGTGSSGGKKYYEGKEYDYVFDVDIEDGGPPLKLPYNKGD   79 (116)
T ss_dssp             -------------------------------------------TTSSSSEEETTEEESEEEEE--STTSS-EEEEE-TTS
T ss_pred             CCCCccceEEEEEcCCCCEEEEEec--CCceEEeEEEeCCCCCCcccccccccCccceEEEEEEecCCCcceeCCccCCC
Confidence            468899999999999 556699999  8999999999995543  35889999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHhcCCCcccHHHHHHHHHHhcCCCC
Q 008510          219 NPYDAADKWLLKENLPFSYRQQIVEFILQNTGQKD  253 (563)
Q Consensus       219 ~~w~~a~~f~~~~~l~~~~~~~v~~fi~~n~~~~~  253 (563)
                      +||.+|++||.+|+||++|+++|++||++|+++.+
T Consensus        80 nP~~aAq~Fi~~n~Lp~~yl~qI~~FI~~N~~~~~  114 (116)
T PF09070_consen   80 NPYEAAQKFIERNNLPQSYLDQIANFIIQNTKGAN  114 (116)
T ss_dssp             -HHHHHHHHHHHHT--CCHHHHHHHHHHHHHSTTT
T ss_pred             CHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCcC
Confidence            99999999999999999999999999999999865

g., UIM, NZF, UBA, UEV, UBP, or CUE domains). The PFU domain appears to be unique to the PLAA family of proteins. A single member of this family of proteins exists in every eukaryotic species examined. Each of these homologues possesses identical domain structure: an N-terminal domain containing seven WD40 repeats, a central PFU domain, and a C-terminal PUL domain, which directly binds to Cdc48, a member of the AAA-ATPase family of molecular chaperone []. In addition to ubiquitin, the PFU domain of DOA1 has been shown to bind to the SH3 domain []. Secondary structure predictions of the PFU domain suggest the presence of an extensive length of beta-sheet, N-terminal to an alpha-helical region []. Some proteins known to contain a PFU domain include: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in the ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein Lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 2K8B_B 2K8A_A 2K8C_B 2K89_A 3L3F_X 3PST_A 3PSP_A.

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=7.6e-25  Score=213.18  Aligned_cols=202  Identities=22%  Similarity=0.354  Sum_probs=157.7

Q ss_pred             CCEEEEEECCCcEEEEcCC-CceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEE
Q 008510            3 GVGIISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAK   77 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~~-g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~   77 (563)
                      +.-++||+.||++|+|+++ ..++..+.||...|..|+|+|+| +++|+|.|.+-|+||  ++..+.... |...|.+++
T Consensus       231 ~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~ia  310 (459)
T KOG0272|consen  231 DLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIA  310 (459)
T ss_pred             ccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeE
Confidence            4579999999999999994 48999999999999999999999 999999999999999  555444333 999999999


Q ss_pred             EccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccce-------e-EEeeccCCceEEEeCCCCceeee-cccCC
Q 008510           78 FLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQ-------Y-KLCRKKVGGLKLEDLPGLEALQI-PGTNA  147 (563)
Q Consensus        78 ~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~-------~-~~~~~~~~~i~~~d~~~~~~l~~-~g~~d  147 (563)
                      |.|||. ++|||.|..-||||+|+++++.  .+.+|...+-.       + ..+++.|+.+++||++....+.. ++|.+
T Consensus       311 f~~DGSL~~tGGlD~~~RvWDlRtgr~im--~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n  388 (459)
T KOG0272|consen  311 FQPDGSLAATGGLDSLGRVWDLRTGRCIM--FLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN  388 (459)
T ss_pred             ecCCCceeeccCccchhheeecccCcEEE--EecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc
Confidence            999999 8999999999999999999553  34445554433       3 34678899999999998765543 35554


Q ss_pred             CeEEEEec----------CCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCC
Q 008510          148 GQTKVVRE----------GDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNR  216 (563)
Q Consensus       148 g~~~l~~~----------~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~  216 (563)
                      -...+-..          +-+..+.+|+.  ..|.+             .+...||+ +.|+++|+ +||..+++.+||.
T Consensus       389 lVS~Vk~~p~~g~fL~TasyD~t~kiWs~--~~~~~-------------~ksLaGHe-~kV~s~Dis~d~~~i~t~s~DR  452 (459)
T KOG0272|consen  389 LVSQVKYSPQEGYFLVTASYDNTVKIWST--RTWSP-------------LKSLAGHE-GKVISLDISPDSQAIATSSFDR  452 (459)
T ss_pred             hhhheEecccCCeEEEEcccCcceeeecC--CCccc-------------chhhcCCc-cceEEEEeccCCceEEEeccCc
Confidence            33333332          22344455553  22332             33466777 88999999 9999999999999


Q ss_pred             CCChhH
Q 008510          217 SDNPYD  222 (563)
Q Consensus       217 ~~~~w~  222 (563)
                      +++.|.
T Consensus       453 T~KLW~  458 (459)
T KOG0272|consen  453 TIKLWR  458 (459)
T ss_pred             eeeecc
Confidence            999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=2.2e-23  Score=200.44  Aligned_cols=207  Identities=21%  Similarity=0.338  Sum_probs=162.5

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCce-eEEEe-cCCcEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVC-VQSIE-HPGCVWD   75 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~-~~~l~-h~~~V~~   75 (563)
                      +|.+++|||.|.|+|+||+ +..+..+.+||...|.||+|+||| .++||+.||+|++||  +|++ ...+. |...|.+
T Consensus       126 ~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~  205 (480)
T KOG0271|consen  126 TGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITA  205 (480)
T ss_pred             CCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeE
Confidence            5789999999999999999 788999999999999999999999 999999999999999  5554 45677 9999999


Q ss_pred             EEEcc-----CCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc-------eeEEeeccCCceEEEeCCCCceeee
Q 008510           76 AKFLE-----NGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS-------QYKLCRKKVGGLKLEDLPGLEALQI  142 (563)
Q Consensus        76 v~~~p-----~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~-------~~~~~~~~~~~i~~~d~~~~~~l~~  142 (563)
                      ++|.|     ..+ +++++.||.|||||+..+++.  ..+.+|..+|.       ..+.+++.|+.|++|+...+.....
T Consensus       206 Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~--~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~  283 (480)
T KOG0271|consen  206 LAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCV--RTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRE  283 (480)
T ss_pred             EeecccccCCCccceecccCCCCEEEEEccCceEE--EEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHh
Confidence            99987     344 999999999999999988743  35566666665       4556788999999999865322111


Q ss_pred             c-cc---------------------CCC------------------------eEEEEecCCCeEEEEEecccceEEEeCc
Q 008510          143 P-GT---------------------NAG------------------------QTKVVREGDNGVAYSWDMKEQKWDKLGE  176 (563)
Q Consensus       143 ~-g~---------------------~dg------------------------~~~l~~~~~~~~~~~wd~~~~~w~~~g~  176 (563)
                      . ||                     +.|                        .-+++...|+...+.|+..... .    
T Consensus       284 lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k-k----  358 (480)
T KOG0271|consen  284 LKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK-K----  358 (480)
T ss_pred             hcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc-c----
Confidence            0 11                     111                        1257777777888888854321 0    


Q ss_pred             EeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHHH
Q 008510          177 VVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAAD  225 (563)
Q Consensus       177 v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~  225 (563)
                               ...-..||. ..|..|.| |||+.+++.+||++++.|+-..
T Consensus       359 ---------pi~rmtgHq-~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t  398 (480)
T KOG0271|consen  359 ---------PITRMTGHQ-ALVNHVSFSPDGRYIASASFDKSVKLWDGRT  398 (480)
T ss_pred             ---------chhhhhchh-hheeeEEECCCccEEEEeecccceeeeeCCC
Confidence                     112245665 67999999 9999999999999999999753

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.90  E-value=2.4e-22  Score=186.50  Aligned_cols=212  Identities=24%  Similarity=0.263  Sum_probs=162.0

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe---cCCcEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE---HPGCVWD   75 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~---h~~~V~~   75 (563)
                      ||++++|+|.|+++|+||+ +|+..+.|.||+.-|.+++|+||. +++|||.|+|+++|+ -+.|..++.   +.+.|.|
T Consensus        74 dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVsc  153 (315)
T KOG0279|consen   74 DGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSC  153 (315)
T ss_pred             CCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEE
Confidence            6899999999999999999 889999999999999999999999 999999999999999 889998887   3679999


Q ss_pred             EEEccCC-c--EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCCceeeecc
Q 008510           76 AKFLENG-D--IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLEALQIPG  144 (563)
Q Consensus        76 v~~~p~g-~--i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~~l~~~g  144 (563)
                      |.|+|+. +  |+++|.|++||+||+++-+...  ...++...+.        ....++..+|.+.+||+...+.+...+
T Consensus       154 vrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~--~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~  231 (315)
T KOG0279|consen  154 VRFSPNESNPIIVSASWDKTVKVWNLRNCQLRT--TFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE  231 (315)
T ss_pred             EEEcCCCCCcEEEEccCCceEEEEccCCcchhh--ccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc
Confidence            9999985 2  8999999999999999876432  2233333333        334467788999999999888877777


Q ss_pred             cCCCeEEEEecCCCeE--------EEEEecccceEEEe--CcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeec
Q 008510          145 TNAGQTKVVREGDNGV--------AYSWDMKEQKWDKL--GEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLP  213 (563)
Q Consensus       145 ~~dg~~~l~~~~~~~~--------~~~wd~~~~~w~~~--g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~  213 (563)
                      +.+-...++++++...        +.+||..++....-  -+..+.        ..... .-+..+..+ .||..++.+-
T Consensus       232 a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~--------s~~~~-~~~clslaws~dG~tLf~g~  302 (315)
T KOG0279|consen  232 AFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGP--------SSKAG-DPICLSLAWSADGQTLFAGY  302 (315)
T ss_pred             CCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhcccccccc--------ccccC-CcEEEEEEEcCCCcEEEeee
Confidence            7676666666665322        34666554432110  111111        01111 134677777 8999999999


Q ss_pred             CCCCCChhHHH
Q 008510          214 YNRSDNPYDAA  224 (563)
Q Consensus       214 ~n~~~~~w~~a  224 (563)
                      -|+.+++|.++
T Consensus       303 td~~irv~qv~  313 (315)
T KOG0279|consen  303 TDNVIRVWQVA  313 (315)
T ss_pred             cCCcEEEEEee
Confidence            99999999875

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.90  E-value=3e-23  Score=202.05  Aligned_cols=205  Identities=17%  Similarity=0.223  Sum_probs=159.1

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCC--C-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHAS--G-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVW   74 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~--g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~   74 (563)
                      |++.|+|||.+|++++|+. ++..+.+|.||++.|.++.|+|.  + .++||+.||+|++|+  +...++.+. |...|.
T Consensus       186 ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs  265 (459)
T KOG0272|consen  186 DSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVS  265 (459)
T ss_pred             CCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhhe
Confidence            6889999999999999999 88999999999999999999997  4 899999999999999  447888888 999999


Q ss_pred             EEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccccccee--------EEeeccCCceEEEeCCCCceeee-cc
Q 008510           75 DAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQY--------KLCRKKVGGLKLEDLPGLEALQI-PG  144 (563)
Q Consensus        75 ~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~--------~~~~~~~~~i~~~d~~~~~~l~~-~g  144 (563)
                      .|+|+|+|+ ++|+|.|.+-|+||++++....  ..++|...|...        ..+++-|..-++||++++..+.. .|
T Consensus       266 ~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL--~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~g  343 (459)
T KOG0272|consen  266 RVAFHPSGKFLGTASFDSTWRLWDLETKSELL--LQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAG  343 (459)
T ss_pred             eeeecCCCceeeecccccchhhcccccchhhH--hhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecc
Confidence            999999999 9999999999999999987322  233455444433        34566677788999998755433 25


Q ss_pred             cCCCeEEEEecCC---------CeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-C-CCCeeeeec
Q 008510          145 TNAGQTKVVREGD---------NGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-G-DGEPTRKLP  213 (563)
Q Consensus       145 ~~dg~~~l~~~~~---------~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~-dg~~~~~~~  213 (563)
                      |.+..+.+-++++         +..+.+||...+.               ....+.+|. +-|-.|.+ + .|..+++.+
T Consensus       344 H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~---------------~ly~ipAH~-nlVS~Vk~~p~~g~fL~Tas  407 (459)
T KOG0272|consen  344 HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRS---------------ELYTIPAHS-NLVSQVKYSPQEGYFLVTAS  407 (459)
T ss_pred             cccceeeEeECCCceEEeecCCCCcEEEeeecccc---------------cceeccccc-chhhheEecccCCeEEEEcc
Confidence            5443333333333         3556677754432               122345565 77888998 4 788899999


Q ss_pred             CCCCCChhHHH
Q 008510          214 YNRSDNPYDAA  224 (563)
Q Consensus       214 ~n~~~~~w~~a  224 (563)
                      ||.++++|...
T Consensus       408 yD~t~kiWs~~  418 (459)
T KOG0272|consen  408 YDNTVKIWSTR  418 (459)
T ss_pred             cCcceeeecCC
Confidence            99999999863

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=5.6e-22  Score=179.76  Aligned_cols=220  Identities=17%  Similarity=0.215  Sum_probs=175.5

Q ss_pred             CCCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEE
Q 008510            1 MPGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWD   75 (563)
Q Consensus         1 ~~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~   75 (563)
                      .||++.++|++|.+||+|+. .|.+++++.||...|..++.+.|+ .|++||.|+.|.+||  +|+.++.+. |.+.|..
T Consensus        27 ~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNt  106 (307)
T KOG0316|consen   27 VDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNT  106 (307)
T ss_pred             cCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeE
Confidence            37999999999999999999 999999999999999999999888 999999999999999  999999999 9999999


Q ss_pred             EEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccce------eEEeeccCCceEEEeCCCCcee--------
Q 008510           76 AKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQ------YKLCRKKVGGLKLEDLPGLEAL--------  140 (563)
Q Consensus        76 v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~------~~~~~~~~~~i~~~d~~~~~~l--------  140 (563)
                      |+|+.+.. +++|+.|.++|+||-|+....+.+.+..+.+.+..      .++.++.||.++.+|++.+...        
T Consensus       107 V~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pi  186 (307)
T KOG0316|consen  107 VRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPI  186 (307)
T ss_pred             EEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhcCCcc
Confidence            99999887 89999999999999999887777777766666553      3456788999999999866433        


Q ss_pred             -eecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCC---------CCCCceeecCcccCcEEEEEcCCCCeee
Q 008510          141 -QIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPD---------DGMNRPILDGIQYDYVFDVDIGDGEPTR  210 (563)
Q Consensus       141 -~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~---------~~~~~~~~~g~~~d~v~~vd~~dg~~~~  210 (563)
                       ....++||...+..+-+ ..+..-|..+|+..  +...++.+         .+.....+.|.+.+.||-||+.|+..+.
T Consensus       187 t~vs~s~d~nc~La~~l~-stlrLlDk~tGklL--~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~s  263 (307)
T KOG0316|consen  187 TSVSFSKDGNCSLASSLD-STLRLLDKETGKLL--KSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQIS  263 (307)
T ss_pred             eeEEecCCCCEEEEeecc-ceeeecccchhHHH--HHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeee
Confidence             33467788877777766 44455665555321  11222211         1125667889999999999998888888


Q ss_pred             eecCCCCCChhHH
Q 008510          211 KLPYNRSDNPYDA  223 (563)
Q Consensus       211 ~~~~n~~~~~w~~  223 (563)
                      +++.-.++++-++
T Consensus       264 k~~~~~~v~v~dl  276 (307)
T KOG0316|consen  264 KLSVVSTVIVTDL  276 (307)
T ss_pred             eeccCCceeEEee
Confidence            8887666654444

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.88  E-value=1.9e-21  Score=181.51  Aligned_cols=182  Identities=25%  Similarity=0.413  Sum_probs=148.0

Q ss_pred             CCCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcC-CC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEE
Q 008510            1 MPGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHA-SG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVW   74 (563)
Q Consensus         1 ~~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p-~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~   74 (563)
                      +|+..|+|+|.|.|.-+||+ +|+.+..|.||++-|.+++++| ++ .|+||+-|++.++||  .+.|.|+|. |...|.
T Consensus       154 ~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDIN  233 (343)
T KOG0286|consen  154 LDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDIN  233 (343)
T ss_pred             cCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccc
Confidence            46788999999999999999 8999999999999999999999 66 899999999999999  899999999 999999


Q ss_pred             EEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceeeecccCCCeEEEE
Q 008510           75 DAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVV  153 (563)
Q Consensus        75 ~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg~~~l~  153 (563)
                      +|+|.|+|. |++|+.|++.|+||+|..+.+....-...                       -..+..+.++..|...+.
T Consensus       234 sv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~-----------------------~~gitSv~FS~SGRlLfa  290 (343)
T KOG0286|consen  234 SVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSI-----------------------ICGITSVAFSKSGRLLFA  290 (343)
T ss_pred             eEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcc-----------------------cCCceeEEEcccccEEEe
Confidence            999999999 99999999999999999873322110000                       001223346667776666


Q ss_pred             ecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhH
Q 008510          154 REGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYD  222 (563)
Q Consensus       154 ~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~  222 (563)
                      .- ++..+++||.-.+      +.++         ...||+ +.|-++.+ +||..+.++++|...++|.
T Consensus       291 gy-~d~~c~vWDtlk~------e~vg---------~L~GHe-NRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  291 GY-DDFTCNVWDTLKG------ERVG---------VLAGHE-NRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             ee-cCCceeEeecccc------ceEE---------EeeccC-CeeEEEEECCCCcEEEecchhHheeecC
Confidence            54 4466788885433      2333         356787 88999999 9999999999999999994

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=1.3e-21  Score=188.42  Aligned_cols=204  Identities=25%  Similarity=0.363  Sum_probs=159.1

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAK   77 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~   77 (563)
                      +.++|+|+|.||+|||||+ .|+|+..+.||+..|+||+|-.+|.+.|||.|++||+|+  +|.+.+.++ |...|..++
T Consensus       216 ~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~la  295 (480)
T KOG0271|consen  216 PCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLA  295 (480)
T ss_pred             CccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeee
Confidence            3578999999999999999 789999999999999999999888999999999999999  889999998 888999999


Q ss_pred             Ecc------------------------------------CCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc---
Q 008510           78 FLE------------------------------------NGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS---  117 (563)
Q Consensus        78 ~~p------------------------------------~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~---  117 (563)
                      .+.                                    .|+ +++||.|.++.+|+....+ .+...+.+|+..|.   
T Consensus       296 lsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k-kpi~rmtgHq~lVn~V~  374 (480)
T KOG0271|consen  296 LSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK-KPITRMTGHQALVNHVS  374 (480)
T ss_pred             ccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc-cchhhhhchhhheeeEE
Confidence            871                                    123 8999999999999976554 22334445555444   


Q ss_pred             -----eeEEeeccCCceEEEeCCCCceeeec-ccCCCeEEEEecCCC---------eEEEEEecccceEEEeCcEeeCCC
Q 008510          118 -----QYKLCRKKVGGLKLEDLPGLEALQIP-GTNAGQTKVVREGDN---------GVAYSWDMKEQKWDKLGEVVDGPD  182 (563)
Q Consensus       118 -----~~~~~~~~~~~i~~~d~~~~~~l~~~-g~~dg~~~l~~~~~~---------~~~~~wd~~~~~w~~~g~v~~~~~  182 (563)
                           .++.+++.|..|++|+.+++..+... ||-+-.+.+..+.|.         ....+|+..+++            
T Consensus       375 fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkK------------  442 (480)
T KOG0271|consen  375 FSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKK------------  442 (480)
T ss_pred             ECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeee------------
Confidence                 34456788999999999988776554 666666655555442         334455544331            


Q ss_pred             CCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhH
Q 008510          183 DGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYD  222 (563)
Q Consensus       183 ~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~  222 (563)
                         -++-..||. |.||.||+ +||+.+.++.-|+-.+.|.
T Consensus       443 ---l~~DLpGh~-DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  443 ---LKQDLPGHA-DEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             ---ecccCCCCC-ceEEEEEecCCCceeecCCCceEEEeec
Confidence               112255776 88999999 9999999999999888774

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.87  E-value=8.6e-22  Score=205.68  Aligned_cols=183  Identities=21%  Similarity=0.333  Sum_probs=155.7

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA   76 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v   76 (563)
                      +.++|+|||.|++||+|++ +..++..++||..+|++|.|+|.| +|+|+|.|++.|+|.  ....++.+. |-+.|.|+
T Consensus       462 d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv  541 (707)
T KOG0263|consen  462 DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCV  541 (707)
T ss_pred             cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceE
Confidence            3578999999999999999 888999999999999999999999 999999999999999  556677777 99999999


Q ss_pred             EEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceeeecccCCCeEEEEec
Q 008510           77 KFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVRE  155 (563)
Q Consensus        77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg~~~l~~~  155 (563)
                      +|+||.. +++||+|.+||+||..+|.                         .++++.-+...+.....+++|.+....+
T Consensus       542 ~FHPNs~Y~aTGSsD~tVRlWDv~~G~-------------------------~VRiF~GH~~~V~al~~Sp~Gr~LaSg~  596 (707)
T KOG0263|consen  542 SFHPNSNYVATGSSDRTVRLWDVSTGN-------------------------SVRIFTGHKGPVTALAFSPCGRYLASGD  596 (707)
T ss_pred             EECCcccccccCCCCceEEEEEcCCCc-------------------------EEEEecCCCCceEEEEEcCCCceEeecc
Confidence            9999998 9999999999999999997                         3556655556666677888998877666


Q ss_pred             CCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHHHH
Q 008510          156 GDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAADK  226 (563)
Q Consensus       156 ~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~~  226 (563)
                      .+ +.+.+||...+.               ....+.|| .+-|+++.| .||..++.++.|.+++.|++-..
T Consensus       597 ed-~~I~iWDl~~~~---------------~v~~l~~H-t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  597 ED-GLIKIWDLANGS---------------LVKQLKGH-TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             cC-CcEEEEEcCCCc---------------chhhhhcc-cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            65 667789976542               22336667 488999999 89999999999999999987554

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.86  E-value=2.4e-22  Score=191.01  Aligned_cols=204  Identities=22%  Similarity=0.333  Sum_probs=165.7

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAK   77 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~   77 (563)
                      |+..++||..|.||++||. +-.|++.+.||++.|.|+.+... .++|||.|.||+|||  +++++.++- |...|..+.
T Consensus       206 DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~r-viisGSSDsTvrvWDv~tge~l~tlihHceaVLhlr  284 (499)
T KOG0281|consen  206 DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDER-VIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLR  284 (499)
T ss_pred             cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccce-EEEecCCCceEEEEeccCCchhhHHhhhcceeEEEE
Confidence            5678999999999999999 78899999999999999998644 899999999999999  999999887 777999999


Q ss_pred             EccCCcEEEEeCCCcEEEEEcCCCcee-ceeeecccccccc------eeEEeeccCCceEEEeCCCCceeeec-ccCCCe
Q 008510           78 FLENGDIVTACSDGVTRIWTVHSDKVA-DSLELEAYASELS------QYKLCRKKVGGLKLEDLPGLEALQIP-GTNAGQ  149 (563)
Q Consensus        78 ~~p~g~i~sgs~Dg~Irvwd~~~~~~~-~~~~~~~~~~~v~------~~~~~~~~~~~i~~~d~~~~~~l~~~-g~~dg~  149 (563)
                      |+ +|.+++++.|.+|+|||+.+.... ....+.+|...|+      .++++++.|.+|++|+..+.+.+... ||+-|.
T Consensus       285 f~-ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gHkRGI  363 (499)
T KOG0281|consen  285 FS-NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGI  363 (499)
T ss_pred             Ee-CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhcccccc
Confidence            86 567999999999999999876521 1123344544433      56778899999999999999887765 887764


Q ss_pred             E-------EEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEcCCCCeeeeecCCCCCChhH
Q 008510          150 T-------KVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYD  222 (563)
Q Consensus       150 ~-------~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~~dg~~~~~~~~n~~~~~w~  222 (563)
                      .       .++.++.+..+.+||...|.+               ....+||+ +.|-++.|.+ +.+.++.||+++++|+
T Consensus       364 AClQYr~rlvVSGSSDntIRlwdi~~G~c---------------LRvLeGHE-eLvRciRFd~-krIVSGaYDGkikvWd  426 (499)
T KOG0281|consen  364 ACLQYRDRLVVSGSSDNTIRLWDIECGAC---------------LRVLEGHE-ELVRCIRFDN-KRIVSGAYDGKIKVWD  426 (499)
T ss_pred             eehhccCeEEEecCCCceEEEEeccccHH---------------HHHHhchH-HhhhheeecC-ceeeeccccceEEEEe
Confidence            3       455555667788888766542               34588998 8899999955 4599999999999999


Q ss_pred             HH
Q 008510          223 AA  224 (563)
Q Consensus       223 ~a  224 (563)
                      ..
T Consensus       427 l~  428 (499)
T KOG0281|consen  427 LQ  428 (499)
T ss_pred             cc
Confidence            74

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.85  E-value=8.1e-20  Score=167.08  Aligned_cols=219  Identities=18%  Similarity=0.298  Sum_probs=107.8

Q ss_pred             CEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc----CCceeEEEe-cCCcEEEE
Q 008510            4 VGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK----DGVCVQSIE-HPGCVWDA   76 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd----~~~~~~~l~-h~~~V~~v   76 (563)
                      -+|+|+|.|-|||+|.. +|.|.+++.-..+.|..+.+.|++ .+++++ ...||+||    ...++.++. |+..|.+|
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaV   89 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAV   89 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEE
Confidence            36788888888888887 777766654333445555555554 333333 23355555    122344444 44455555


Q ss_pred             EEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccc-----cccceeEEeeccCCceEEEeCCCCce-----------
Q 008510           77 KFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYA-----SELSQYKLCRKKVGGLKLEDLPGLEA-----------  139 (563)
Q Consensus        77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~i~~~d~~~~~~-----------  139 (563)
                      .|.-+|+ +++||.||++||||+|...+.+.....+-.     ..-..-.+++.++|.|++||+.....           
T Consensus        90 gF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~  169 (311)
T KOG0315|consen   90 GFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTS  169 (311)
T ss_pred             EEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcc
Confidence            5555555 455555555555555444332221111111     11123334444445555555533210           


Q ss_pred             e-eecccCCCeEEEEecCCCeEEEEEecccceE----EEe------------------CcEeeCCCCCC-----------
Q 008510          140 L-QIPGTNAGQTKVVREGDNGVAYSWDMKEQKW----DKL------------------GEVVDGPDDGM-----------  185 (563)
Q Consensus       140 l-~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w----~~~------------------g~v~~~~~~~~-----------  185 (563)
                      + ...-.+||... ...++++.+|.|+...+..    .++                  +......++..           
T Consensus       170 i~sl~v~~dgsml-~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~  248 (311)
T KOG0315|consen  170 IQSLTVMPDGSML-AAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFF  248 (311)
T ss_pred             eeeEEEcCCCcEE-EEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCce
Confidence            0 11123344322 2223334445554322210    000                  00000000000           


Q ss_pred             -CceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHHH
Q 008510          186 -NRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAAD  225 (563)
Q Consensus       186 -~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~  225 (563)
                       .....+||+ .++++..| .||+++.+.+.|...++|+.+.
T Consensus       249 kle~~l~gh~-rWvWdc~FS~dg~YlvTassd~~~rlW~~~~  289 (311)
T KOG0315|consen  249 KLELVLTGHQ-RWVWDCAFSADGEYLVTASSDHTARLWDLSA  289 (311)
T ss_pred             eeEEEeecCC-ceEEeeeeccCccEEEecCCCCceeeccccc
Confidence             112355665 78999999 8999999999999999999863

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.85  E-value=8e-20  Score=169.81  Aligned_cols=207  Identities=19%  Similarity=0.226  Sum_probs=163.9

Q ss_pred             CCEEEEEECCCcEEEEcC------CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCc
Q 008510            3 GVGIISASHDCTIRLWAL------TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGC   72 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~------~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~   72 (563)
                      -+.++++|.|.++.+|++      .|.+++.+.||+.+|..+..+++| +++|+|.|+++|+||  +++..+.|. |...
T Consensus        28 ~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~d  107 (315)
T KOG0279|consen   28 SDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKD  107 (315)
T ss_pred             CceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCc
Confidence            367999999999999998      267899999999999999999999 999999999999999  778888777 9999


Q ss_pred             EEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccccc----------ceeEEeeccCCceEEEeCCCCceee
Q 008510           73 VWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL----------SQYKLCRKKVGGLKLEDLPGLEALQ  141 (563)
Q Consensus        73 V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v----------~~~~~~~~~~~~i~~~d~~~~~~l~  141 (563)
                      |.+|+|+||.+ |++|+.|.+|++|+...........-. ..+.|          ...+++.+.|+.+++||+.+.+...
T Consensus       108 Vlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~-~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~  186 (315)
T KOG0279|consen  108 VLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDS-HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRT  186 (315)
T ss_pred             eEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCC-CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhh
Confidence            99999999988 999999999999999876543221111 02222          3455677789999999998665432


Q ss_pred             -----------ecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEcCCCCeee
Q 008510          142 -----------IPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGEPTR  210 (563)
Q Consensus       142 -----------~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~~dg~~~~  210 (563)
                                 ...++||........ ++.++.||...++                 .+|.=...+.|.++.|...++.+
T Consensus       187 ~~~gh~~~v~t~~vSpDGslcasGgk-dg~~~LwdL~~~k-----------------~lysl~a~~~v~sl~fspnrywL  248 (315)
T KOG0279|consen  187 TFIGHSGYVNTVTVSPDGSLCASGGK-DGEAMLWDLNEGK-----------------NLYSLEAFDIVNSLCFSPNRYWL  248 (315)
T ss_pred             ccccccccEEEEEECCCCCEEecCCC-CceEEEEEccCCc-----------------eeEeccCCCeEeeEEecCCceeE
Confidence                       236788887766444 4788999987653                 22332334789999997788999


Q ss_pred             eecCCCCCChhHHHHHHH
Q 008510          211 KLPYNRSDNPYDAADKWL  228 (563)
Q Consensus       211 ~~~~n~~~~~w~~a~~f~  228 (563)
                      ......++++|+...+.+
T Consensus       249 ~~at~~sIkIwdl~~~~~  266 (315)
T KOG0279|consen  249 CAATATSIKIWDLESKAV  266 (315)
T ss_pred             eeccCCceEEEeccchhh
Confidence            999999999999876643

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.82  E-value=5.5e-19  Score=187.92  Aligned_cols=206  Identities=26%  Similarity=0.377  Sum_probs=151.6

Q ss_pred             CCCEEEEEECCCcEEEEcC--CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEE
Q 008510            2 PGVGIISASHDCTIRLWAL--TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWD   75 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~--~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~   75 (563)
                      +|+++++|+.|++||+||+  .+.+++++.||..+|++++|+|+| .++||+.|++|||||  +++++..+. |.+.|.+
T Consensus       214 d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~  293 (456)
T KOG0266|consen  214 DGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISG  293 (456)
T ss_pred             CCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEE
Confidence            5789999999999999999  468999999999999999999999 999999999999999  789999999 9999999


Q ss_pred             EEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccc----------ccceeEEeeccCCceEEEeCCCCceeeec-
Q 008510           76 AKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYAS----------ELSQYKLCRKKVGGLKLEDLPGLEALQIP-  143 (563)
Q Consensus        76 v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~----------~v~~~~~~~~~~~~i~~~d~~~~~~l~~~-  143 (563)
                      ++|+++|. +++++.|+.|++||+.++.......+...+.          .-..+.+.+..++.+++||+......... 
T Consensus       294 ~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~  373 (456)
T KOG0266|consen  294 LAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYT  373 (456)
T ss_pred             EEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeec
Confidence            99999999 8999999999999999998321111111111          22355667778889999999866554433 


Q ss_pred             ccCCC-------------eEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCee
Q 008510          144 GTNAG-------------QTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPT  209 (563)
Q Consensus       144 g~~dg-------------~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~  209 (563)
                      ++..+             ...+....+ ..+++|+..++               .....++||...-+..+++ +....+
T Consensus       374 ~~~~~~~~~~~~~~~~~~~~i~sg~~d-~~v~~~~~~s~---------------~~~~~l~~h~~~~~~~~~~~~~~~~~  437 (456)
T KOG0266|consen  374 GHSNLVRCIFSPTLSTGGKLIYSGSED-GSVYVWDSSSG---------------GILQRLEGHSKAAVSDLSSHPTENLI  437 (456)
T ss_pred             ccCCcceeEecccccCCCCeEEEEeCC-ceEEEEeCCcc---------------chhhhhcCCCCCceeccccCCCcCee
Confidence            55444             222222222 33445554332               1334466663356777777 566667


Q ss_pred             eeec--CCCCCChhHH
Q 008510          210 RKLP--YNRSDNPYDA  223 (563)
Q Consensus       210 ~~~~--~n~~~~~w~~  223 (563)
                      ...+  .|..++.|..
T Consensus       438 ~s~s~~~d~~~~~w~~  453 (456)
T KOG0266|consen  438 ASSSFEGDGLIRLWKY  453 (456)
T ss_pred             eecCcCCCceEEEecC
Confidence            7777  4566777754

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.82  E-value=1.4e-19  Score=173.04  Aligned_cols=206  Identities=17%  Similarity=0.245  Sum_probs=153.4

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEE
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAK   77 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~   77 (563)
                      +.+|+|||.|++|+|||+ +|++..++.||...|..|++++.. +++++++|+.|+.||  ..+.++.+. |-..|.|++
T Consensus       163 n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~  242 (460)
T KOG0285|consen  163 NEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLD  242 (460)
T ss_pred             ceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEe
Confidence            468999999999999999 999999999999999999999988 999999999999999  667777666 888999999


Q ss_pred             EccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCCceeeecccCCC
Q 008510           78 FLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLEALQIPGTNAG  148 (563)
Q Consensus        78 ~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg  148 (563)
                      .+|.-+ |++|+.|.++||||+|+..  +...+.+|...|.        ...++++.|++|++||+..+.......+...
T Consensus       243 lhPTldvl~t~grDst~RvWDiRtr~--~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkk  320 (460)
T KOG0285|consen  243 LHPTLDVLVTGGRDSTIRVWDIRTRA--SVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKK  320 (460)
T ss_pred             ccccceeEEecCCcceEEEeeecccc--eEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccc
Confidence            999877 9999999999999999976  4446666666554        4556788899999999987765544433222


Q ss_pred             -eEEEEec--------CCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEcCCCCeeeeecCCCCCC
Q 008510          149 -QTKVVRE--------GDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDN  219 (563)
Q Consensus       149 -~~~l~~~--------~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~~dg~~~~~~~~n~~~~  219 (563)
                       ...++-.        .....+.+|+...+.+.      .         .+.||. ..+.++...+...+++++.|+.+-
T Consensus       321 svral~lhP~e~~fASas~dnik~w~~p~g~f~------~---------nlsgh~-~iintl~~nsD~v~~~G~dng~~~  384 (460)
T KOG0285|consen  321 SVRALCLHPKENLFASASPDNIKQWKLPEGEFL------Q---------NLSGHN-AIINTLSVNSDGVLVSGGDNGSIM  384 (460)
T ss_pred             eeeEEecCCchhhhhccCCccceeccCCccchh------h---------cccccc-ceeeeeeeccCceEEEcCCceEEE
Confidence             2222222        11122345554443221      1         144554 667777773333577888888887


Q ss_pred             hhHHHHH
Q 008510          220 PYDAADK  226 (563)
Q Consensus       220 ~w~~a~~  226 (563)
                      -|+-.++
T Consensus       385 fwdwksg  391 (460)
T KOG0285|consen  385 FWDWKSG  391 (460)
T ss_pred             EEecCcC
Confidence            7776543

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.82  E-value=5.8e-20  Score=182.15  Aligned_cols=209  Identities=18%  Similarity=0.228  Sum_probs=160.8

Q ss_pred             CCCEEEEEECCCcEEEEcC--CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEE
Q 008510            2 PGVGIISASHDCTIRLWAL--TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDA   76 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~--~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v   76 (563)
                      .+.+|+|||.|+.|+||++  +++|+++|.||..+|.+++|+++| .|.|+|-|+++++||  +|+|++.+.....+.||
T Consensus       226 ~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cv  305 (503)
T KOG0282|consen  226 KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCV  305 (503)
T ss_pred             eeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceee
Confidence            3678999999999999999  699999999999999999999999 999999999999999  99999999887899999


Q ss_pred             EEccCC-c-EEEEeCCCcEEEEEcCCCceeceeeeccccccc--------ceeEEeeccCCceEEEeCCCCceeee----
Q 008510           77 KFLENG-D-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL--------SQYKLCRKKVGGLKLEDLPGLEALQI----  142 (563)
Q Consensus        77 ~~~p~g-~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v--------~~~~~~~~~~~~i~~~d~~~~~~l~~----  142 (563)
                      .|+|++ . +++|++|+.|+-||+|+++..+.  ...+-..+        ....++...++.+++|+.+.+..+..    
T Consensus       306 kf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqe--Yd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~  383 (503)
T KOG0282|consen  306 KFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQE--YDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADP  383 (503)
T ss_pred             ecCCCCCcEEEEecCCCcEEEEeccchHHHHH--HHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcch
Confidence            999988 4 89999999999999999984321  11121222        24456777889999999976533321    


Q ss_pred             --------cccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcc-cCcEEEEEc-CCCCeeeee
Q 008510          143 --------PGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQ-YDYVFDVDI-GDGEPTRKL  212 (563)
Q Consensus       143 --------~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~-~d~v~~vd~-~dg~~~~~~  212 (563)
                              .-++.|.+...-+-+ ..+++++...       ..     ....++.|+||. -+|-..|++ +||+.+.++
T Consensus       384 ~~hsmP~~~~~P~~~~~~aQs~d-N~i~ifs~~~-------~~-----r~nkkK~feGh~vaGys~~v~fSpDG~~l~SG  450 (503)
T KOG0282|consen  384 EMHTMPCLTLHPNGKWFAAQSMD-NYIAIFSTVP-------PF-----RLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSG  450 (503)
T ss_pred             hhccCcceecCCCCCeehhhccC-ceEEEEeccc-------cc-----ccCHhhhhcceeccCceeeEEEcCCCCeEEee
Confidence                    134445444444333 3333444211       11     112667788874 378899999 999999999


Q ss_pred             cCCCCCChhHHHH
Q 008510          213 PYNRSDNPYDAAD  225 (563)
Q Consensus       213 ~~n~~~~~w~~a~  225 (563)
                      .-++..+.|+-..
T Consensus       451 dsdG~v~~wdwkt  463 (503)
T KOG0282|consen  451 DSDGKVNFWDWKT  463 (503)
T ss_pred             cCCccEEEeechh
Confidence            9999999998754

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.82  E-value=6.7e-19  Score=187.26  Aligned_cols=206  Identities=24%  Similarity=0.412  Sum_probs=159.5

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCc--eeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc---CCceeEEEe-cCCcE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQ--VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK---DGVCVQSIE-HPGCV   73 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~--~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd---~~~~~~~l~-h~~~V   73 (563)
                      +|+.+++++.|+++++|+. .++  ..+++.+|...|++++|+|+| .+++|+.|+++||||   .+.+++++. |+..|
T Consensus       170 ~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v  249 (456)
T KOG0266|consen  170 DGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYV  249 (456)
T ss_pred             CCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCce
Confidence            6889999999999999999 666  788889999999999999999 999999999999999   568999998 99999


Q ss_pred             EEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCCcee--e-
Q 008510           74 WDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLEAL--Q-  141 (563)
Q Consensus        74 ~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~~l--~-  141 (563)
                      .+++|+|+|+ +++|+.|++||+||++++++..  .+..|.+.+.        ....+++.++.|++||+.+....  . 
T Consensus       250 ~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~--~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~  327 (456)
T KOG0266|consen  250 TSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVR--KLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKL  327 (456)
T ss_pred             EEEEecCCCCEEEEecCCCcEEEEeccCCeEEE--eeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeec
Confidence            9999999998 9999999999999999977443  4455554444        33445677999999999888721  1 


Q ss_pred             ------------ecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccC--cEEEEEc-CCC
Q 008510          142 ------------IPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYD--YVFDVDI-GDG  206 (563)
Q Consensus       142 ------------~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d--~v~~vd~-~dg  206 (563)
                                  ..++++|.+.+....+ ..+.+|+...+.               -...+.||..+  -+++... .+|
T Consensus       328 ~~~~~~~~~~~~~~fsp~~~~ll~~~~d-~~~~~w~l~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~  391 (456)
T KOG0266|consen  328 LSGAENSAPVTSVQFSPNGKYLLSASLD-RTLKLWDLRSGK---------------SVGTYTGHSNLVRCIFSPTLSTGG  391 (456)
T ss_pred             ccCCCCCCceeEEEECCCCcEEEEecCC-CeEEEEEccCCc---------------ceeeecccCCcceeEecccccCCC
Confidence                        1144555555555444 444566654432               12235555544  2345554 899


Q ss_pred             CeeeeecCCCCCChhHHHH
Q 008510          207 EPTRKLPYNRSDNPYDAAD  225 (563)
Q Consensus       207 ~~~~~~~~n~~~~~w~~a~  225 (563)
                      +.++++..|..+.+|+...
T Consensus       392 ~~i~sg~~d~~v~~~~~~s  410 (456)
T KOG0266|consen  392 KLIYSGSEDGSVYVWDSSS  410 (456)
T ss_pred             CeEEEEeCCceEEEEeCCc
Confidence            9999999999999999864

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.81  E-value=7.1e-19  Score=165.05  Aligned_cols=220  Identities=18%  Similarity=0.256  Sum_probs=164.3

Q ss_pred             CCCEEEEEECCCcEEEEcCC--CceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEE
Q 008510            2 PGVGIISASHDCTIRLWALT--GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWD   75 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~~--g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~   75 (563)
                      +|..|+|||.|..|.+|++.  .+-..+++||.+.|..+.|++|+ .++|||.|++|+.||  +|++++.++ |...|.+
T Consensus        58 ~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs  137 (338)
T KOG0265|consen   58 DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNS  137 (338)
T ss_pred             CCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeee
Confidence            58899999999999999984  45567889999999999999999 999999999999999  999998888 8889999


Q ss_pred             EEEccCCc--EEEEeCCCcEEEEEcCCCceecee----eecccc-cccceeEEeeccCCceEEEeCCCCceeeec-ccCC
Q 008510           76 AKFLENGD--IVTACSDGVTRIWTVHSDKVADSL----ELEAYA-SELSQYKLCRKKVGGLKLEDLPGLEALQIP-GTNA  147 (563)
Q Consensus        76 v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~----~~~~~~-~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~-g~~d  147 (563)
                      +.-+.-|.  +.+|+.|+++|+||.|+...+...    ++.++. ..-....+++.-|+.|++||++..+.+... ||.|
T Consensus       138 ~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~D  217 (338)
T KOG0265|consen  138 LDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHAD  217 (338)
T ss_pred             cCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccC
Confidence            98555565  688999999999999977643322    222221 123355667778899999999988887665 9999


Q ss_pred             CeEEEEecCCCeE--EEEEecccceEEEeCcEeeCCCCCCCceeecCcccC---cEEEEEc-CCCCeeeeecCCCCCChh
Q 008510          148 GQTKVVREGDNGV--AYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYD---YVFDVDI-GDGEPTRKLPYNRSDNPY  221 (563)
Q Consensus       148 g~~~l~~~~~~~~--~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d---~v~~vd~-~dg~~~~~~~~n~~~~~w  221 (563)
                      -.+-+..+.++..  .-..|.+.+.|+.-.    -........+|+|+...   ....+.+ +++..+..++.|+.+-+|
T Consensus       218 tIt~lsls~~gs~llsnsMd~tvrvwd~rp----~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvw  293 (338)
T KOG0265|consen  218 TITGLSLSRYGSFLLSNSMDNTVRVWDVRP----FAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVW  293 (338)
T ss_pred             ceeeEEeccCCCccccccccceEEEEEecc----cCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEe
Confidence            9888887766543  223344445554321    11111124567775322   2466777 888888889999999999


Q ss_pred             HHHH
Q 008510          222 DAAD  225 (563)
Q Consensus       222 ~~a~  225 (563)
                      ++..
T Consensus       294 d~~~  297 (338)
T KOG0265|consen  294 DTTS  297 (338)
T ss_pred             eccc
Confidence            8864

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.81  E-value=1e-18  Score=181.16  Aligned_cols=183  Identities=19%  Similarity=0.364  Sum_probs=149.5

Q ss_pred             CCEEEEEECC-CcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510            3 GVGIISASHD-CTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA   76 (563)
Q Consensus         3 g~~l~s~s~D-gtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v   76 (563)
                      |+++|-|+.- |.+-||++ +..-+.+.+||...+.+++++||| .++||++||.|||||  ++-|+.++. |+..|..+
T Consensus       319 GDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v  398 (893)
T KOG0291|consen  319 GDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAV  398 (893)
T ss_pred             CCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEE
Confidence            7888877654 89999999 667778889999999999999999 999999999999999  888999999 99999999


Q ss_pred             EEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceee-ecccCCCeEEEEe
Q 008510           77 KFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQ-IPGTNAGQTKVVR  154 (563)
Q Consensus        77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~-~~g~~dg~~~l~~  154 (563)
                      .|+.+|+ +++.|.||+||.||+...+..+                         -+..|.+.... +..-+.|.+....
T Consensus       399 ~f~~~g~~llssSLDGtVRAwDlkRYrNfR-------------------------Tft~P~p~QfscvavD~sGelV~AG  453 (893)
T KOG0291|consen  399 QFTARGNVLLSSSLDGTVRAWDLKRYRNFR-------------------------TFTSPEPIQFSCVAVDPSGELVCAG  453 (893)
T ss_pred             EEEecCCEEEEeecCCeEEeeeecccceee-------------------------eecCCCceeeeEEEEcCCCCEEEee
Confidence            9999999 9999999999999999887322                         22223222221 1234457777777


Q ss_pred             cCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHHHH
Q 008510          155 EGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAADK  226 (563)
Q Consensus       155 ~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~~  226 (563)
                      ..|.-.+++|+..+|+..               -+..||+ +-|..+.+ ++|..+++++||+++++|++-.+
T Consensus       454 ~~d~F~IfvWS~qTGqll---------------DiLsGHE-gPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s  510 (893)
T KOG0291|consen  454 AQDSFEIFVWSVQTGQLL---------------DILSGHE-GPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS  510 (893)
T ss_pred             ccceEEEEEEEeecCeee---------------ehhcCCC-CcceeeEEccccCeEEeccccceEEEEEeecc
Confidence            777677999998777532               2366787 78999999 89999999999999999998654

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.79  E-value=2e-18  Score=165.17  Aligned_cols=208  Identities=22%  Similarity=0.342  Sum_probs=156.9

Q ss_pred             CEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEEE
Q 008510            4 VGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKF   78 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~~   78 (563)
                      -+++||+.|+.|+-||+ ..+.++.+.||-+.|+|++.+|.- .++|||.|.++||||  +...+.++. |...|.+|.+
T Consensus       206 pYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~  285 (460)
T KOG0285|consen  206 PYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMC  285 (460)
T ss_pred             ceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEe
Confidence            37999999999999999 789999999999999999999976 999999999999999  777888888 9999999999


Q ss_pred             cc-CCcEEEEeCCCcEEEEEcCCCceeceeeecccccc-------cceeEEeeccCCceEEEeCCCCceeeec-------
Q 008510           79 LE-NGDIVTACSDGVTRIWTVHSDKVADSLELEAYASE-------LSQYKLCRKKVGGLKLEDLPGLEALQIP-------  143 (563)
Q Consensus        79 ~p-~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~-------v~~~~~~~~~~~~i~~~d~~~~~~l~~~-------  143 (563)
                      .| |+.+++||.|++||+||++.++...  .+..+...       .....++......|+.|++|.++.+...       
T Consensus       286 ~~~dpqvit~S~D~tvrlWDl~agkt~~--tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~ii  363 (460)
T KOG0285|consen  286 QPTDPQVITGSHDSTVRLWDLRAGKTMI--TLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAII  363 (460)
T ss_pred             ecCCCceEEecCCceEEEeeeccCceeE--eeecccceeeEEecCCchhhhhccCCccceeccCCccchhhcccccccee
Confidence            98 5559999999999999999998442  22333333       3334455666679999999988765441       


Q ss_pred             ----ccCCCeEEEEecCCCeEEEEEecccce-EEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCC
Q 008510          144 ----GTNAGQTKVVREGDNGVAYSWDMKEQK-WDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRS  217 (563)
Q Consensus       144 ----g~~dg~~~l~~~~~~~~~~~wd~~~~~-w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~  217 (563)
                          +..||.  ++.++|++.++.||-.+|- ++....++.. ++      .++.  --||.-.| ..|..+.++.-|++
T Consensus       364 ntl~~nsD~v--~~~G~dng~~~fwdwksg~nyQ~~~t~vqp-GS------l~sE--agI~as~fDktg~rlit~eadKt  432 (460)
T KOG0285|consen  364 NTLSVNSDGV--LVSGGDNGSIMFWDWKSGHNYQRGQTIVQP-GS------LESE--AGIFASCFDKTGSRLITGEADKT  432 (460)
T ss_pred             eeeeeccCce--EEEcCCceEEEEEecCcCcccccccccccC-Cc------cccc--cceeEEeecccCceEEeccCCcc
Confidence                334443  4556677888889866553 2222222221 10      1111  22677777 68888999999999


Q ss_pred             CChhHHH
Q 008510          218 DNPYDAA  224 (563)
Q Consensus       218 ~~~w~~a  224 (563)
                      +++|.-.
T Consensus       433 Ik~~keD  439 (460)
T KOG0285|consen  433 IKMYKED  439 (460)
T ss_pred             eEEEecc
Confidence            9999743

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=3.1e-18  Score=174.20  Aligned_cols=164  Identities=22%  Similarity=0.385  Sum_probs=134.5

Q ss_pred             CEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc---CCceeEEEe-cCCcEEEEE
Q 008510            4 VGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK---DGVCVQSIE-HPGCVWDAK   77 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd---~~~~~~~l~-h~~~V~~v~   77 (563)
                      +++++||.|+.||+|+. +++.+++++.|.++|.|++++|.. .+.|+|.|-+||+||   .-.|.|++. |...|.+|+
T Consensus        68 nWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~  147 (794)
T KOG0276|consen   68 NWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVA  147 (794)
T ss_pred             ceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEE
Confidence            57999999999999999 899999999999999999999998 999999999999999   557889998 999999999


Q ss_pred             EccCCc--EEEEeCCCcEEEEEcCCCceeceeeecccccccc----------eeEEeeccCCceEEEeCCCCceeeec-c
Q 008510           78 FLENGD--IVTACSDGVTRIWTVHSDKVADSLELEAYASELS----------QYKLCRKKVGGLKLEDLPGLEALQIP-G  144 (563)
Q Consensus        78 ~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~----------~~~~~~~~~~~i~~~d~~~~~~l~~~-g  144 (563)
                      |+|+..  ++++|.|++|+||.+.+..  +..++++|+..|+          .+.+++..|..+++||..+...++.. |
T Consensus       148 fnPkD~ntFaS~sLDrTVKVWslgs~~--~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeG  225 (794)
T KOG0276|consen  148 FNPKDPNTFASASLDRTVKVWSLGSPH--PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEG  225 (794)
T ss_pred             ecCCCccceeeeeccccEEEEEcCCCC--CceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhc
Confidence            999654  9999999999999998775  4567778877665          36678888999999999877655443 4


Q ss_pred             cCCC----------eEEEEecCCCeEEEEEecccce
Q 008510          145 TNAG----------QTKVVREGDNGVAYSWDMKEQK  170 (563)
Q Consensus       145 ~~dg----------~~~l~~~~~~~~~~~wd~~~~~  170 (563)
                      |...          .+.+.+ +.++.+.+|+..+..
T Consensus       226 Ht~Nvs~v~fhp~lpiiisg-sEDGTvriWhs~Ty~  260 (794)
T KOG0276|consen  226 HTNNVSFVFFHPELPIIISG-SEDGTVRIWNSKTYK  260 (794)
T ss_pred             ccccceEEEecCCCcEEEEe-cCCccEEEecCccee
Confidence            4433          333333 334666778765544

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=1.2e-18  Score=159.87  Aligned_cols=210  Identities=22%  Similarity=0.314  Sum_probs=156.8

Q ss_pred             CCEEEEEECCCcEEEEcC--CCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEE
Q 008510            3 GVGIISASHDCTIRLWAL--TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWD   75 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~--~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~   75 (563)
                      .+.+++|+.||++|+||+  ...++..++.|...|+++.|++..  .++++|.|+|||+|+  .++.++++. |...|..
T Consensus        73 e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~  152 (311)
T KOG0277|consen   73 ENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQ  152 (311)
T ss_pred             cceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEE
Confidence            357899999999999998  567999999999999999999864  788999999999999  788899998 9999999


Q ss_pred             EEEccCC-c-EEEEeCCCcEEEEEcCCCceeceeeecccccc---------cceeEEeeccCCceEEEeCCCCceee--e
Q 008510           76 AKFLENG-D-IVTACSDGVTRIWTVHSDKVADSLELEAYASE---------LSQYKLCRKKVGGLKLEDLPGLEALQ--I  142 (563)
Q Consensus        76 v~~~p~g-~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~i~~~d~~~~~~l~--~  142 (563)
                      .+|+|.. + ++++|.|+++++||++..-...  .+..|..+         -..+..++..|+.|+.||++......  .
T Consensus       153 a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~--~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL  230 (311)
T KOG0277|consen  153 AAFSPHIPNLFASASGDGTLRLWDVRSPGKFM--SIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFEL  230 (311)
T ss_pred             EecCCCCCCeEEEccCCceEEEEEecCCCcee--EEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceee
Confidence            9999954 4 8999999999999998653222  23333322         22456678889999999998654322  2


Q ss_pred             cccCCCeEEEEecCCCe--E-EEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc--CCCCeeeeecCCCC
Q 008510          143 PGTNAGQTKVVREGDNG--V-AYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI--GDGEPTRKLPYNRS  217 (563)
Q Consensus       143 ~g~~dg~~~l~~~~~~~--~-~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~--~dg~~~~~~~~n~~  217 (563)
                      .||.--..++-+++.-.  . .+.||++.+.|+...   ..    ..+..++ ++..+|+.+|+  .++..+++.++|..
T Consensus       231 ~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~---~d----s~~e~~~-~HtEFv~g~Dws~~~~~~vAs~gWDe~  302 (311)
T KOG0277|consen  231 NGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPER---QD----SAIETVD-HHTEFVCGLDWSLFDPGQVASTGWDEL  302 (311)
T ss_pred             cCCceEEEEEecCcchhhHhhhccccceEEeccccc---ch----hhhhhhh-ccceEEeccccccccCceeeecccccc
Confidence            25544444555554321  1 457888888887431   00    0122233 34488998888  57778999999999


Q ss_pred             CChhH
Q 008510          218 DNPYD  222 (563)
Q Consensus       218 ~~~w~  222 (563)
                      .++|+
T Consensus       303 l~Vw~  307 (311)
T KOG0277|consen  303 LYVWN  307 (311)
T ss_pred             eeeec
Confidence            99997

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.79  E-value=1.6e-18  Score=166.45  Aligned_cols=203  Identities=21%  Similarity=0.331  Sum_probs=160.0

Q ss_pred             CCCEEEEEECCCcEEEEcC--CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEE
Q 008510            2 PGVGIISASHDCTIRLWAL--TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWD   75 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~--~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~   75 (563)
                      .|.++++||.|-.+++||.  ..+|++.+.||...|.+|+|-|.| .++||+.|.+|+.|+  ++-|+.++. |+..|..
T Consensus       161 ~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~  240 (406)
T KOG0295|consen  161 SGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRM  240 (406)
T ss_pred             CccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEE
Confidence            4789999999999999999  368999999999999999999999 999999999999999  999999999 9899999


Q ss_pred             EEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccc------------------c-----ceeEEeeccCCceEE
Q 008510           76 AKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASE------------------L-----SQYKLCRKKVGGLKL  131 (563)
Q Consensus        76 v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~------------------v-----~~~~~~~~~~~~i~~  131 (563)
                      ++.+.||. +++++.|.++++|-+.++++..  .++.|+..                  .     ..+..+++.|+.|++
T Consensus       241 v~v~~DGti~As~s~dqtl~vW~~~t~~~k~--~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~  318 (406)
T KOG0295|consen  241 VRVNQDGTIIASCSNDQTLRVWVVATKQCKA--ELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKI  318 (406)
T ss_pred             EEecCCeeEEEecCCCceEEEEEeccchhhh--hhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEE
Confidence            99999999 8999999999999999884221  11111111                  1     146667889999999


Q ss_pred             EeCCCCceeeec-ccCC----------CeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEE
Q 008510          132 EDLPGLEALQIP-GTNA----------GQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFD  200 (563)
Q Consensus       132 ~d~~~~~~l~~~-g~~d----------g~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~  200 (563)
                      ||++++..+... ||.+          |++.+.. .|++...+||...+++.+.               ...|+ .+|.+
T Consensus       319 wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sc-aDDktlrvwdl~~~~cmk~---------------~~ah~-hfvt~  381 (406)
T KOG0295|consen  319 WDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSC-ADDKTLRVWDLKNLQCMKT---------------LEAHE-HFVTS  381 (406)
T ss_pred             EeccCCeEEEEEecccceeeeeEEcCCCeEEEEE-ecCCcEEEEEeccceeeec---------------cCCCc-ceeEE
Confidence            999999877654 5443          4444433 3445567788777665543               33344 67899


Q ss_pred             EEc-CCCCeeeeecCCCCCChhHH
Q 008510          201 VDI-GDGEPTRKLPYNRSDNPYDA  223 (563)
Q Consensus       201 vd~-~dg~~~~~~~~n~~~~~w~~  223 (563)
                      +|+ .+--.+.+++.|.+.++|..
T Consensus       382 lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  382 LDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             EecCCCCceEEeccccceeeeeec
Confidence            999 44456889999999999864

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.79  E-value=1.6e-19  Score=171.95  Aligned_cols=216  Identities=19%  Similarity=0.255  Sum_probs=154.5

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc-C-C---ceeEEEe-cCCcEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK-D-G---VCVQSIE-HPGCVW   74 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd-~-~---~~~~~l~-h~~~V~   74 (563)
                      +.+.++|||.|.||++||+ +|++++++-+|...|..+.|+ +|+++|||.|+++++|| . .   .+.+.+. |.+.|.
T Consensus       246 d~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~-ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN  324 (499)
T KOG0281|consen  246 DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS-NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN  324 (499)
T ss_pred             cceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe-CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence            4578999999999999999 999999999999999999998 45999999999999999 2 2   2334444 899999


Q ss_pred             EEEEccCCcEEEEeCCCcEEEEEcCCCceeceeeecccccccc------eeEEeeccCCceEEEeCCCCceeeec-ccCC
Q 008510           75 DAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELS------QYKLCRKKVGGLKLEDLPGLEALQIP-GTNA  147 (563)
Q Consensus        75 ~v~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~------~~~~~~~~~~~i~~~d~~~~~~l~~~-g~~d  147 (563)
                      .|.|... -|++++.|.+|++|+..+.....  .+.+|...++      .+.+++++|.+|++||+..+..+.+. ||.+
T Consensus       325 vVdfd~k-yIVsASgDRTikvW~~st~efvR--tl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe  401 (499)
T KOG0281|consen  325 VVDFDDK-YIVSASGDRTIKVWSTSTCEFVR--TLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE  401 (499)
T ss_pred             eeccccc-eEEEecCCceEEEEeccceeeeh--hhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHH
Confidence            9999533 39999999999999999987543  4555555443      56678899999999999988887765 7766


Q ss_pred             CeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCC-CceeecCcccCcEEEEEcCCCCeeeeecCCCCCChhHH
Q 008510          148 GQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGM-NRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDA  223 (563)
Q Consensus       148 g~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~-~~~~~~g~~~d~v~~vd~~dg~~~~~~~~n~~~~~w~~  223 (563)
                      -...+-+.....+.-.||.+.+.|+.....-.-+.++. ...... .+.+.||...|.+- .+.+.+.|.++-+|+.
T Consensus       402 LvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv-~hsgRVFrLQFD~f-qIvsssHddtILiWdF  476 (499)
T KOG0281|consen  402 LVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLV-EHSGRVFRLQFDEF-QIISSSHDDTILIWDF  476 (499)
T ss_pred             hhhheeecCceeeeccccceEEEEecccccCCcccccchHHHhhh-hccceeEEEeecce-EEEeccCCCeEEEEEc
Confidence            54444444333334455555566654422211110110 011111 22367888888554 3778888888888885

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.79  E-value=7.8e-18  Score=174.77  Aligned_cols=241  Identities=17%  Similarity=0.221  Sum_probs=179.9

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecC--CcEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHP--GCVWD   75 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~--~~V~~   75 (563)
                      ||.++++|+.||.|||||. +|-|+.++..|++.|..+.|+..| .++|+|-||+||.||  .+++.++++.|  ....|
T Consensus       361 Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfsc  440 (893)
T KOG0291|consen  361 DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSC  440 (893)
T ss_pred             CCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeE
Confidence            6899999999999999999 899999999999999999999999 899999999999999  89999999944  47889


Q ss_pred             EEEccCCc-EEEEeCCC-cEEEEEcCCCceeceeeecccccccce--------eEEeeccCCceEEEeCCCC--------
Q 008510           76 AKFLENGD-IVTACSDG-VTRIWTVHSDKVADSLELEAYASELSQ--------YKLCRKKVGGLKLEDLPGL--------  137 (563)
Q Consensus        76 v~~~p~g~-i~sgs~Dg-~Irvwd~~~~~~~~~~~~~~~~~~v~~--------~~~~~~~~~~i~~~d~~~~--------  137 (563)
                      |+..|.|+ +..|+.|. .|.||++.+|+..  +.+.+|+.+|.+        ...+++-|.+|++||+-..        
T Consensus       441 vavD~sGelV~AG~~d~F~IfvWS~qTGqll--DiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~  518 (893)
T KOG0291|consen  441 VAVDPSGELVCAGAQDSFEIFVWSVQTGQLL--DILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE  518 (893)
T ss_pred             EEEcCCCCEEEeeccceEEEEEEEeecCeee--ehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe
Confidence            99999999 55666665 5999999999844  466778877764        3446778899999998543        


Q ss_pred             ---ceeeecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeC----CCCC-CCceeec-CcccCcEEEEEc-CCCC
Q 008510          138 ---EALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDG----PDDG-MNRPILD-GIQYDYVFDVDI-GDGE  207 (563)
Q Consensus       138 ---~~l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~----~~~~-~~~~~~~-g~~~d~v~~vd~-~dg~  207 (563)
                         .++....++||.-..+..-+ +.+-.||...+.  .+|.+-+-    .+.. .....-+ .....+...+++ .||+
T Consensus       519 i~sdvl~vsfrPdG~elaVaTld-gqItf~d~~~~~--q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~  595 (893)
T KOG0291|consen  519 IRSDVLAVSFRPDGKELAVATLD-GQITFFDIKEAV--QVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGK  595 (893)
T ss_pred             eccceeEEEEcCCCCeEEEEEec-ceEEEEEhhhce--eeccccchhhccccccccceeehhhcccCCceEEEEEcCCCC
Confidence               34455588888887777776 445578865542  22222111    0000 0111111 111244678888 8999


Q ss_pred             eeeeecCCCCCChhHHHHHHHHh-cCCC-cccHHHHHHHHHH
Q 008510          208 PTRKLPYNRSDNPYDAADKWLLK-ENLP-FSYRQQIVEFILQ  247 (563)
Q Consensus       208 ~~~~~~~n~~~~~w~~a~~f~~~-~~l~-~~~~~~v~~fi~~  247 (563)
                      .++.++-...+.+|++.++-+.+ -.+. ..-+|.+-+|+-+
T Consensus       596 ~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~  637 (893)
T KOG0291|consen  596 CILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNR  637 (893)
T ss_pred             EEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhcc
Confidence            99999999999999998775443 2222 2457888888865

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.78  E-value=7.4e-18  Score=166.68  Aligned_cols=207  Identities=18%  Similarity=0.290  Sum_probs=158.5

Q ss_pred             CCCEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEE
Q 008510            2 PGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAK   77 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~   77 (563)
                      +|..||+|+.||.+|+|+.+|..+.+|..|.++|.++.|+.+| ++++++-|+++.+||  ++.+.|.+. |...-..|.
T Consensus       246 ~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVd  325 (524)
T KOG0273|consen  246 DGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVD  325 (524)
T ss_pred             CCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceE
Confidence            5899999999999999999999999999999999999999999 999999999999999  889989888 777778899


Q ss_pred             EccCCcEEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCCc-----------
Q 008510           78 FLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLE-----------  138 (563)
Q Consensus        78 ~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~-----------  138 (563)
                      |-.+..+++++.|+.|+|+-+...+..  ..+.+|.++|.        ....+.+.|+++++|......           
T Consensus       326 W~~~~~F~ts~td~~i~V~kv~~~~P~--~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hske  403 (524)
T KOG0273|consen  326 WQSNDEFATSSTDGCIHVCKVGEDRPV--KTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKE  403 (524)
T ss_pred             EecCceEeecCCCceEEEEEecCCCcc--eeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccc
Confidence            988878999999999999999887633  34445666654        345567889999999964332           


Q ss_pred             eeeecccCCCe--------EEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCee
Q 008510          139 ALQIPGTNAGQ--------TKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPT  209 (563)
Q Consensus       139 ~l~~~g~~dg~--------~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~  209 (563)
                      .+....+++|.        ..+....-+..+..||...++               ....+..|. +.|+++++ ++|+++
T Consensus       404 i~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv---------------~i~~f~kH~-~pVysvafS~~g~yl  467 (524)
T KOG0273|consen  404 IYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV---------------PIHTLMKHQ-EPVYSVAFSPNGRYL  467 (524)
T ss_pred             eeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc---------------eeEeeccCC-CceEEEEecCCCcEE
Confidence            22222222221        112222222344455544332               222355555 77999999 999999


Q ss_pred             eeecCCCCCChhHHHHH
Q 008510          210 RKLPYNRSDNPYDAADK  226 (563)
Q Consensus       210 ~~~~~n~~~~~w~~a~~  226 (563)
                      +++.+|+.+.+|.+...
T Consensus       468 AsGs~dg~V~iws~~~~  484 (524)
T KOG0273|consen  468 ASGSLDGCVHIWSTKTG  484 (524)
T ss_pred             EecCCCCeeEeccccch
Confidence            99999999999998644

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.78  E-value=7.8e-18  Score=158.10  Aligned_cols=198  Identities=22%  Similarity=0.361  Sum_probs=148.5

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDA   76 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v   76 (563)
                      |++.++|||.|.+|+.||. +|++++.+++|..+|.++..+.-|  .+.|++.||++|+||  ...+++++..+-.+.+|
T Consensus       101 d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv  180 (338)
T KOG0265|consen  101 DGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAV  180 (338)
T ss_pred             CCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEE
Confidence            6889999999999999999 999999999999999999855556  688999999999999  78889999877799999


Q ss_pred             EEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEE--------eeccCCceEEEeCCCC----ceeee-
Q 008510           77 KFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKL--------CRKKVGGLKLEDLPGL----EALQI-  142 (563)
Q Consensus        77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~~i~~~d~~~~----~~l~~-  142 (563)
                      .|...++ +.+|+-|+.|++||++.....  ..+.++.+.+..+.+        +..-+..+++||++..    ..+.+ 
T Consensus       181 ~f~d~s~qv~sggIdn~ikvWd~r~~d~~--~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if  258 (338)
T KOG0265|consen  181 GFKDTSDQVISGGIDNDIKVWDLRKNDGL--YTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIF  258 (338)
T ss_pred             EecccccceeeccccCceeeeccccCcce--EEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEe
Confidence            9999988 999999999999999887633  355666666654443        4556789999999643    21221 


Q ss_pred             --------------cccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCC
Q 008510          143 --------------PGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGE  207 (563)
Q Consensus       143 --------------~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~  207 (563)
                                    ..++++...-..+.| ..+|+||...+...               ..+.||. +-|..++| +.-.
T Consensus       259 ~g~~hnfeknlL~cswsp~~~~i~ags~d-r~vyvwd~~~r~~l---------------yklpGh~-gsvn~~~Fhp~e~  321 (338)
T KOG0265|consen  259 QGHIHNFEKNLLKCSWSPNGTKITAGSAD-RFVYVWDTTSRRIL---------------YKLPGHY-GSVNEVDFHPTEP  321 (338)
T ss_pred             ecchhhhhhhcceeeccCCCCcccccccc-ceEEEeecccccEE---------------EEcCCcc-eeEEEeeecCCCc
Confidence                          223333333333333 55678886553211               2244554 78999999 6655


Q ss_pred             eeeeecCCCCC
Q 008510          208 PTRKLPYNRSD  218 (563)
Q Consensus       208 ~~~~~~~n~~~  218 (563)
                      .+++.+-|+++
T Consensus       322 iils~~sdk~i  332 (338)
T KOG0265|consen  322 IILSCSSDKTI  332 (338)
T ss_pred             EEEEeccCcee
Confidence            67777777764

>PTZ00421 coronin; Provisional

Probab=99.78  E-value=1.6e-17  Score=176.61  Aligned_cols=170  Identities=18%  Similarity=0.259  Sum_probs=128.2

Q ss_pred             CCCEEEEEECCCcEEEEcC-CC-------ceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCceeEEEe-
Q 008510            2 PGVGIISASHDCTIRLWAL-TG-------QVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIE-   68 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g-------~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~~~l~-   68 (563)
                      ++++|++||.|++|++||+ ++       +++.++.+|...|.+++|+|++  .+++|+.|++|+|||  +++.+..+. 
T Consensus        87 d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~  166 (493)
T PTZ00421         87 DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKC  166 (493)
T ss_pred             CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcC
Confidence            4679999999999999998 43       3678899999999999999975  899999999999999  778888887 


Q ss_pred             cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccccc---------ceeEEee----ccCCceEEEeC
Q 008510           69 HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL---------SQYKLCR----KKVGGLKLEDL  134 (563)
Q Consensus        69 h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v---------~~~~~~~----~~~~~i~~~d~  134 (563)
                      |...|.+++|+|+|. +++|+.|++|++||+++++....  +..+....         ....++.    ..++.|++||+
T Consensus       167 h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~t--l~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDl  244 (493)
T PTZ00421        167 HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSS--VEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDT  244 (493)
T ss_pred             CCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEE--EecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeC
Confidence            889999999999999 89999999999999999875432  23332211         1223322    34789999999


Q ss_pred             CCCce-eee------------cccCCCeEEEEecCCCeEEEEEecccceEEE
Q 008510          135 PGLEA-LQI------------PGTNAGQTKVVREGDNGVAYSWDMKEQKWDK  173 (563)
Q Consensus       135 ~~~~~-l~~------------~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~  173 (563)
                      +.... +..            ..+.++.+.+..+.+++.+.+|+...+....
T Consensus       245 r~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~  296 (493)
T PTZ00421        245 RKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTF  296 (493)
T ss_pred             CCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEE
Confidence            75421 111            1345666655555445677888887765443

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.78  E-value=1.2e-18  Score=167.30  Aligned_cols=208  Identities=22%  Similarity=0.295  Sum_probs=159.5

Q ss_pred             EEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc---CCceeEEEe-cCCcEEEEEE
Q 008510            5 GIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK---DGVCVQSIE-HPGCVWDAKF   78 (563)
Q Consensus         5 ~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd---~~~~~~~l~-h~~~V~~v~~   78 (563)
                      ..++++.|++|++||. +|++.+.++||++.|.+++|+..| .+++|+.|-.+++||   ..+|+.++. |...|.+|+|
T Consensus       122 ~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f  201 (406)
T KOG0295|consen  122 LVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFF  201 (406)
T ss_pred             EEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEE
Confidence            5788999999999999 999999999999999999999999 999999999999999   356666665 8889999999


Q ss_pred             ccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCCcee---------
Q 008510           79 LENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLEAL---------  140 (563)
Q Consensus        79 ~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~~l---------  140 (563)
                      .|.|+ |++++.|.+|+.|+..++-+..  .+.++.+.+.        ....+.+.+..+++|-+...+..         
T Consensus       202 ~P~gd~ilS~srD~tik~We~~tg~cv~--t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~  279 (406)
T KOG0295|consen  202 LPLGDHILSCSRDNTIKAWECDTGYCVK--TFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHP  279 (406)
T ss_pred             EecCCeeeecccccceeEEecccceeEE--eccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccc
Confidence            99999 9999999999999999997543  3333333322        23335567789999988655111         


Q ss_pred             ----------------eecccCC-CeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc
Q 008510          141 ----------------QIPGTNA-GQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI  203 (563)
Q Consensus       141 ----------------~~~g~~d-g~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~  203 (563)
                                      ...++.+ |++....+.| ..+.+||+.++.+.               ..+.||. .+|-.+.|
T Consensus       280 vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrD-ktIk~wdv~tg~cL---------------~tL~ghd-nwVr~~af  342 (406)
T KOG0295|consen  280 VECIAWAPESSYPSISEATGSTNGGQVLGSGSRD-KTIKIWDVSTGMCL---------------FTLVGHD-NWVRGVAF  342 (406)
T ss_pred             eEEEEecccccCcchhhccCCCCCccEEEeeccc-ceEEEEeccCCeEE---------------EEEeccc-ceeeeeEE
Confidence                            0012222 3444444444 66778887776332               1244555 88999999


Q ss_pred             -CCCCeeeeecCCCCCChhHHHHHHHHhc
Q 008510          204 -GDGEPTRKLPYNRSDNPYDAADKWLLKE  231 (563)
Q Consensus       204 -~dg~~~~~~~~n~~~~~w~~a~~f~~~~  231 (563)
                       +.|+++++...|++.++|++..+-|.++
T Consensus       343 ~p~Gkyi~ScaDDktlrvwdl~~~~cmk~  371 (406)
T KOG0295|consen  343 SPGGKYILSCADDKTLRVWDLKNLQCMKT  371 (406)
T ss_pred             cCCCeEEEEEecCCcEEEEEeccceeeec
Confidence             9999999999999999999976655543

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.77  E-value=4.5e-18  Score=179.45  Aligned_cols=190  Identities=21%  Similarity=0.310  Sum_probs=145.3

Q ss_pred             CCCCEEEEEECCCcEEEEcC-C--------------------------------C-------------------------
Q 008510            1 MPGVGIISASHDCTIRLWAL-T--------------------------------G-------------------------   22 (563)
Q Consensus         1 ~~g~~l~s~s~DgtIrlWd~-~--------------------------------g-------------------------   22 (563)
                      .||+++|+||.||.||||.+ +                                .                         
T Consensus       277 ~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~  356 (712)
T KOG0283|consen  277 HDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPLKAFV  356 (712)
T ss_pred             CCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCCCcccc
Confidence            37999999999999999987 5                                0                         


Q ss_pred             ---ceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEEEccCCc--EEEEeCCCcEEE
Q 008510           23 ---QVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKFLENGD--IVTACSDGVTRI   95 (563)
Q Consensus        23 ---~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~~~p~g~--i~sgs~Dg~Irv   95 (563)
                         +++..|.||.+.|.+++|+.++.|+|+|.|+|||+|+  ...|+.+|.|++.|+||+|+|..+  +++||.||.||+
T Consensus       357 f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRi  436 (712)
T KOG0283|consen  357 FSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRL  436 (712)
T ss_pred             ccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEE
Confidence               2334678999999999999999999999999999999  889999999999999999999554  999999999999


Q ss_pred             EEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceeeecccCCCeEEEEecCCCeEEEEEecccceEEEeC
Q 008510           96 WTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLG  175 (563)
Q Consensus        96 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g  175 (563)
                      |++...++..                         ..|++ .-+..++..+||+..++++-+ +.|+.|+....+...-.
T Consensus       437 WsI~d~~Vv~-------------------------W~Dl~-~lITAvcy~PdGk~avIGt~~-G~C~fY~t~~lk~~~~~  489 (712)
T KOG0283|consen  437 WSISDKKVVD-------------------------WNDLR-DLITAVCYSPDGKGAVIGTFN-GYCRFYDTEGLKLVSDF  489 (712)
T ss_pred             eecCcCeeEe-------------------------ehhhh-hhheeEEeccCCceEEEEEec-cEEEEEEccCCeEEEee
Confidence            9999877332                         22333 112233477888888888776 66777777666555555


Q ss_pred             cEeeCCCCCCCceeecCcccCcEEEEEcCCCC--eeeeecCCCCCChhHHHH
Q 008510          176 EVVDGPDDGMNRPILDGIQYDYVFDVDIGDGE--PTRKLPYNRSDNPYDAAD  225 (563)
Q Consensus       176 ~v~~~~~~~~~~~~~~g~~~d~v~~vd~~dg~--~~~~~~~n~~~~~w~~a~  225 (563)
                      .+....     ++-..|+   .|..+.+-.|.  .++-.+.|..+++|+..+
T Consensus       490 ~I~~~~-----~Kk~~~~---rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~  533 (712)
T KOG0283|consen  490 HIRLHN-----KKKKQGK---RITGLQFFPGDPDEVLVTSNDSRIRIYDGRD  533 (712)
T ss_pred             eEeecc-----CccccCc---eeeeeEecCCCCCeEEEecCCCceEEEeccc
Confidence            554432     2223333   47777773333  488889999999999843

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.77  E-value=6e-17  Score=184.61  Aligned_cols=214  Identities=17%  Similarity=0.225  Sum_probs=151.9

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcC-CC-eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEE
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHA-SG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAK   77 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p-~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~   77 (563)
                      +.++++|+.||+|++||+ +++.+..+.+|.+.|++++|+| ++ .++|||.|++|++||  ++.++.++.+...|+++.
T Consensus       545 ~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~  624 (793)
T PLN00181        545 KSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQ  624 (793)
T ss_pred             CCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEE
Confidence            578999999999999999 7889999999999999999997 56 899999999999999  788888888667899999


Q ss_pred             Ecc-CCc-EEEEeCCCcEEEEEcCCCceeceeeeccccccc-------ceeEEeeccCCceEEEeCCCC------cee-e
Q 008510           78 FLE-NGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL-------SQYKLCRKKVGGLKLEDLPGL------EAL-Q  141 (563)
Q Consensus        78 ~~p-~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~~i~~~d~~~~------~~l-~  141 (563)
                      |++ +|. +++|+.||.|++||+++.+. ....+.+|...+       ....++++.|+.|++||++..      ..+ .
T Consensus       625 ~~~~~g~~latgs~dg~I~iwD~~~~~~-~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~  703 (793)
T PLN00181        625 FPSESGRSLAFGSADHKVYYYDLRNPKL-PLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHS  703 (793)
T ss_pred             EeCCCCCEEEEEeCCCeEEEEECCCCCc-cceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEE
Confidence            965 677 99999999999999987652 112233333332       244567788999999999742      111 1


Q ss_pred             ecc----------cCCCeEEEEecCCCeEEEEEecccce--EEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCe
Q 008510          142 IPG----------TNAGQTKVVREGDNGVAYSWDMKEQK--WDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEP  208 (563)
Q Consensus       142 ~~g----------~~dg~~~l~~~~~~~~~~~wd~~~~~--w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~  208 (563)
                      ..|          +++|.+.+..+.+ +.+++|+.....  |....    ............++. +.|.++.| ++|..
T Consensus       704 ~~gh~~~i~~v~~s~~~~~lasgs~D-~~v~iw~~~~~~~~~s~~~----~~~~~~~~~~~~~~~-~~V~~v~ws~~~~~  777 (793)
T PLN00181        704 FMGHTNVKNFVGLSVSDGYIATGSET-NEVFVYHKAFPMPVLSYKF----KTIDPVSGLEVDDAS-QFISSVCWRGQSST  777 (793)
T ss_pred             EcCCCCCeeEEEEcCCCCEEEEEeCC-CEEEEEECCCCCceEEEec----ccCCcccccccCCCC-cEEEEEEEcCCCCe
Confidence            113          3345444444433 566777754331  11110    000000011122222 67999999 89999


Q ss_pred             eeeecCCCCCChhHH
Q 008510          209 TRKLPYNRSDNPYDA  223 (563)
Q Consensus       209 ~~~~~~n~~~~~w~~  223 (563)
                      ++.+..|+++++|+.
T Consensus       778 lva~~~dG~I~i~~~  792 (793)
T PLN00181        778 LVAANSTGNIKILEM  792 (793)
T ss_pred             EEEecCCCcEEEEec
Confidence            999999999999974

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.75  E-value=7.4e-18  Score=174.76  Aligned_cols=178  Identities=21%  Similarity=0.347  Sum_probs=137.5

Q ss_pred             CEEEEEECCCcEEEEcCCC----------ceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-c
Q 008510            4 VGIISASHDCTIRLWALTG----------QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-H   69 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~~g----------~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h   69 (563)
                      .+|+++|.|+++++|++.+          .+..+...|...|+||+++|+. .++|||.|++++||+  +.....++. |
T Consensus       425 sffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH  504 (775)
T KOG0319|consen  425 SFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGH  504 (775)
T ss_pred             cEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCC
Confidence            6899999999999999833          1122446799999999999998 999999999999999  778888898 9


Q ss_pred             CCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceeeecccCCC
Q 008510           70 PGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAG  148 (563)
Q Consensus        70 ~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg  148 (563)
                      +..||||.|+|+.. ++|+|.|++|+||.+.+..+..  .+.+|.                       ..++...+-.+|
T Consensus       505 ~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClk--T~eGH~-----------------------~aVlra~F~~~~  559 (775)
T KOG0319|consen  505 TRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLK--TFEGHT-----------------------SAVLRASFIRNG  559 (775)
T ss_pred             ccceEEEEeccccceeEeccCCceEEEEEeccceeee--eecCcc-----------------------ceeEeeeeeeCC
Confidence            99999999999988 8999999999999999987442  222332                       233444444455


Q ss_pred             eEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHH
Q 008510          149 QTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDA  223 (563)
Q Consensus       149 ~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~  223 (563)
                      ...+..+. ++.+.+|+..++.+.               +.+++|+ |.|+.... +.+..+++++-|+.+..|.-
T Consensus       560 ~qliS~~a-dGliKlWnikt~eC~---------------~tlD~H~-DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD  618 (775)
T KOG0319|consen  560 KQLISAGA-DGLIKLWNIKTNECE---------------MTLDAHN-DRVWALSVSPLLDMFVTGGGDGRIIFWKD  618 (775)
T ss_pred             cEEEeccC-CCcEEEEeccchhhh---------------hhhhhcc-ceeEEEeecCccceeEecCCCeEEEEeec
Confidence            44444444 467778887666433               2367777 88998888 77778889999998888853

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.75  E-value=4.3e-18  Score=178.19  Aligned_cols=101  Identities=30%  Similarity=0.542  Sum_probs=97.0

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEE
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAK   77 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~   77 (563)
                      |-+|||||.|+|.|+|+. ...+++.+.||-+-|.|++|+|++ ++++||.|++||+||  +|.+++.|. |.++|.+++
T Consensus       505 GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~  584 (707)
T KOG0263|consen  505 GYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALA  584 (707)
T ss_pred             ceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEE
Confidence            678999999999999999 778999999999999999999999 999999999999999  999999999 999999999


Q ss_pred             EccCCc-EEEEeCCCcEEEEEcCCCce
Q 008510           78 FLENGD-IVTACSDGVTRIWTVHSDKV  103 (563)
Q Consensus        78 ~~p~g~-i~sgs~Dg~Irvwd~~~~~~  103 (563)
                      |+|+|+ +++|+.||.|.+||+.+++.
T Consensus       585 ~Sp~Gr~LaSg~ed~~I~iWDl~~~~~  611 (707)
T KOG0263|consen  585 FSPCGRYLASGDEDGLIKIWDLANGSL  611 (707)
T ss_pred             EcCCCceEeecccCCcEEEEEcCCCcc
Confidence            999999 99999999999999999873

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=9.5e-17  Score=148.89  Aligned_cols=207  Identities=17%  Similarity=0.223  Sum_probs=145.1

Q ss_pred             CCCEEEEEECCCcEEEEcC---CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-----CCceeEEEe-cCC
Q 008510            2 PGVGIISASHDCTIRLWAL---TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-----DGVCVQSIE-HPG   71 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~---~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-----~~~~~~~l~-h~~   71 (563)
                      .|++|++||.|+|+-||.-   +.+|+.+++||...|.|++|+++| +||+||+|++|.||.     ..+|+..++ |..
T Consensus        72 ~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Htq  151 (312)
T KOG0645|consen   72 HGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQ  151 (312)
T ss_pred             CCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccc
Confidence            4889999999999999987   457999999999999999999999 999999999999998     346777888 999


Q ss_pred             cEEEEEEccCCc-EEEEeCCCcEEEEEcC-CCceeceeeecccccccc--------eeEEeeccCCceEEEeCC------
Q 008510           72 CVWDAKFLENGD-IVTACSDGVTRIWTVH-SDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLP------  135 (563)
Q Consensus        72 ~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~-~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~------  135 (563)
                      .|-.|.|+|..+ ++++|.|++||+|.-. .+.......+..+...|-        ....+...++++++|...      
T Consensus       152 DVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~~  231 (312)
T KOG0645|consen  152 DVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSGM  231 (312)
T ss_pred             cccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcchh
Confidence            999999999877 8999999999999987 555566667777764433        344466778899999843      


Q ss_pred             -CCceeeecccCCCeEEEEecCCCeE-EEEEec--ccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-C-CCCee
Q 008510          136 -GLEALQIPGTNAGQTKVVREGDNGV-AYSWDM--KEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-G-DGEPT  209 (563)
Q Consensus       136 -~~~~l~~~g~~dg~~~l~~~~~~~~-~~~wd~--~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~-dg~~~  209 (563)
                       .++.+.++.. +|.+. ..++|+.+ +|.-+.  ....|..+...            -..|+ .-|.+|.+ + .+..+
T Consensus       232 ~sr~~Y~v~W~-~~~Ia-S~ggD~~i~lf~~s~~~d~p~~~l~~~~------------~~aHe-~dVNsV~w~p~~~~~L  296 (312)
T KOG0645|consen  232 HSRALYDVPWD-NGVIA-SGGGDDAIRLFKESDSPDEPSWNLLAKK------------EGAHE-VDVNSVQWNPKVSNRL  296 (312)
T ss_pred             cccceEeeeec-ccceE-eccCCCEEEEEEecCCCCCchHHHHHhh------------hcccc-cccceEEEcCCCCCce
Confidence             1222222221 22211 11122222 211110  01122211111            11244 45889999 5 35568


Q ss_pred             eeecCCCCCChhHH
Q 008510          210 RKLPYNRSDNPYDA  223 (563)
Q Consensus       210 ~~~~~n~~~~~w~~  223 (563)
                      ++.+.|+.++.|..
T Consensus       297 ~s~~DDG~v~~W~l  310 (312)
T KOG0645|consen  297 ASGGDDGIVNFWEL  310 (312)
T ss_pred             eecCCCceEEEEEe
Confidence            89999999999975

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.75  E-value=2.8e-17  Score=158.69  Aligned_cols=209  Identities=22%  Similarity=0.279  Sum_probs=153.5

Q ss_pred             CCEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcC-CC---eEEEEeCCCcEEEEc--CCc----eeEEE-ecCC
Q 008510            3 GVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHA-SG---LIVSGSEDRFAKIWK--DGV----CVQSI-EHPG   71 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p-~g---~l~s~s~D~tvriWd--~~~----~~~~l-~h~~   71 (563)
                      ++.|+||+.||++|+||..|++..++.||+++|.++++.- +.   .|+++|.|+++++|.  .++    +++.- .|.+
T Consensus       115 ~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~  194 (423)
T KOG0313|consen  115 SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKR  194 (423)
T ss_pred             CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhccccc
Confidence            5789999999999999999999999999999999888753 32   699999999999998  222    22222 3999


Q ss_pred             cEEEEEEccCCc-EEEEeCCCcEEEEEcCCC-----------------------ceeceeeeccccccccee-------E
Q 008510           72 CVWDAKFLENGD-IVTACSDGVTRIWTVHSD-----------------------KVADSLELEAYASELSQY-------K  120 (563)
Q Consensus        72 ~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~-----------------------~~~~~~~~~~~~~~v~~~-------~  120 (563)
                      .|-+|+..++|. +++|+.|.+|++|+..+.                       ...+...+.+|.+.|...       .
T Consensus       195 ~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~  274 (423)
T KOG0313|consen  195 SVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVI  274 (423)
T ss_pred             ceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCce
Confidence            999999999998 999999999999992211                       112334556676666644       4


Q ss_pred             EeeccCCceEEEeCCCCceeeec----------ccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceee
Q 008510          121 LCRKKVGGLKLEDLPGLEALQIP----------GTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPIL  190 (563)
Q Consensus       121 ~~~~~~~~i~~~d~~~~~~l~~~----------g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~  190 (563)
                      ++.+.|.+|+.||+.........          -++... ++..+..+..+..||.+.+.    |.+        -++.|
T Consensus       275 yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~-Ll~~gssdr~irl~DPR~~~----gs~--------v~~s~  341 (423)
T KOG0313|consen  275 YSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSK-LLASGSSDRHIRLWDPRTGD----GSV--------VSQSL  341 (423)
T ss_pred             EeecccceEEEEEeecccceeeeecCcceeEeecccccc-eeeecCCCCceeecCCCCCC----Cce--------eEEee
Confidence            46778899999999766443222          222222 33333444667788876651    222        34568


Q ss_pred             cCcccCcEEEEEc-C-CCCeeeeecCCCCCChhHHHH
Q 008510          191 DGIQYDYVFDVDI-G-DGEPTRKLPYNRSDNPYDAAD  225 (563)
Q Consensus       191 ~g~~~d~v~~vd~-~-dg~~~~~~~~n~~~~~w~~a~  225 (563)
                      .||. .+|-.+.+ + +--...+++||+++++|++..
T Consensus       342 ~gH~-nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS  377 (423)
T KOG0313|consen  342 IGHK-NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS  377 (423)
T ss_pred             ecch-hhhhheecCCCCceEEEEEecCCeEEEEEecc
Confidence            8998 69999999 4 444578999999999999954

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.74  E-value=5.9e-17  Score=156.50  Aligned_cols=184  Identities=18%  Similarity=0.238  Sum_probs=139.0

Q ss_pred             CCCEEEEEECCCcEEEEcC--C------------------------CceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcE
Q 008510            2 PGVGIISASHDCTIRLWAL--T------------------------GQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFA   55 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~--~------------------------g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tv   55 (563)
                      +|.+|+|||.|.+|++|+.  +                        +.++-++.||+.+|.+|-|++.+.+.|+|.|.||
T Consensus       204 sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTI  283 (423)
T KOG0313|consen  204 SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTI  283 (423)
T ss_pred             CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceE
Confidence            5889999999999999992  1                        1356678999999999999997699999999999


Q ss_pred             EEEc--CCceeEEEecCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCce-eceeeecccccccceeEEeeccCCceEE
Q 008510           56 KIWK--DGVCVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKV-ADSLELEAYASELSQYKLCRKKVGGLKL  131 (563)
Q Consensus        56 riWd--~~~~~~~l~h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~i~~  131 (563)
                      |.||  ++.++.++..+....|++++|..+ |++||.|..||+||.|++.- .....+-+|.+-|..+            
T Consensus       284 k~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssv------------  351 (423)
T KOG0313|consen  284 KVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSV------------  351 (423)
T ss_pred             EEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhhe------------
Confidence            9999  899999998888999999999888 89999999999999998751 1222333333322221            


Q ss_pred             EeCCCCceeeecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEcCCCCeeee
Q 008510          132 EDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGEPTRK  211 (563)
Q Consensus       132 ~d~~~~~~l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~~dg~~~~~  211 (563)
                                 ..++...+.++....++.+.+||.+.- |.             ....+.||. |.|+++|+.+|..+++
T Consensus       352 -----------kwsp~~~~~~~S~S~D~t~klWDvRS~-k~-------------plydI~~h~-DKvl~vdW~~~~~IvS  405 (423)
T KOG0313|consen  352 -----------KWSPTNEFQLVSGSYDNTVKLWDVRST-KA-------------PLYDIAGHN-DKVLSVDWNEGGLIVS  405 (423)
T ss_pred             -----------ecCCCCceEEEEEecCCeEEEEEeccC-CC-------------cceeeccCC-ceEEEEeccCCceEEe
Confidence                       134455555555555566666775332 11             122344554 9999999988888999


Q ss_pred             ecCCCCCChhHH
Q 008510          212 LPYNRSDNPYDA  223 (563)
Q Consensus       212 ~~~n~~~~~w~~  223 (563)
                      ++.|.+++++.-
T Consensus       406 GGaD~~l~i~~~  417 (423)
T KOG0313|consen  406 GGADNKLRIFKG  417 (423)
T ss_pred             ccCcceEEEecc
Confidence            999998887764

>PTZ00420 coronin; Provisional

Probab=99.74  E-value=2.9e-16  Score=167.93  Aligned_cols=132  Identities=22%  Similarity=0.315  Sum_probs=104.9

Q ss_pred             CCEEEEEECCCcEEEEcC-CC--------ceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCceeEEEec
Q 008510            3 GVGIISASHDCTIRLWAL-TG--------QVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIEH   69 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g--------~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~~~l~h   69 (563)
                      +.+|+|||.||+|++||+ ++        +++..+.+|...|.+++|+|++  .++|+|.|++|+|||  +++.+..+.|
T Consensus        87 ~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~  166 (568)
T PTZ00420         87 SEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINM  166 (568)
T ss_pred             CCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEec
Confidence            679999999999999998 43        2455788999999999999988  468999999999999  6777777778


Q ss_pred             CCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccccc-------------ceeEEeeccC----CceEE
Q 008510           70 PGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL-------------SQYKLCRKKV----GGLKL  131 (563)
Q Consensus        70 ~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v-------------~~~~~~~~~~----~~i~~  131 (563)
                      +..|.+++|+|+|. +++++.|+.|++||+++++...  .+..|...+             ....++.+.+    +.|++
T Consensus       167 ~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~--tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkL  244 (568)
T PTZ00420        167 PKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIAS--SFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKL  244 (568)
T ss_pred             CCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEE--EEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEE
Confidence            78999999999999 8889999999999999987543  334444321             1234444433    36999


Q ss_pred             EeCCC
Q 008510          132 EDLPG  136 (563)
Q Consensus       132 ~d~~~  136 (563)
                      ||++.
T Consensus       245 WDlr~  249 (568)
T PTZ00420        245 WDLKN  249 (568)
T ss_pred             EECCC
Confidence            99884

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=2.4e-16  Score=146.17  Aligned_cols=184  Identities=23%  Similarity=0.370  Sum_probs=131.2

Q ss_pred             CCEEEEEECCCcEEEEcCC-C---ceeEEE-ecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc----CCceeEEEe-cCC
Q 008510            3 GVGIISASHDCTIRLWALT-G---QVLMEM-VGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK----DGVCVQSIE-HPG   71 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~~-g---~~i~~l-~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd----~~~~~~~l~-h~~   71 (563)
                      |..|+|||.|..||+|+.. +   .|...+ .+|+..|.+|+|+|.| +++++|.|.++-||.    ..+|+.++. |..
T Consensus        27 g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEn  106 (312)
T KOG0645|consen   27 GVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHEN  106 (312)
T ss_pred             ceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeecccc
Confidence            5589999999999999994 3   344444 3799999999999999 999999999999998    458888898 999


Q ss_pred             cEEEEEEccCCc-EEEEeCCCcEEEEEcCCCcee-ceeeecccccccceeEEeeccCCceEEEeCCCCceeeecccCCCe
Q 008510           72 CVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVA-DSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQ  149 (563)
Q Consensus        72 ~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg~  149 (563)
                      .|-||+|+++|. +|+++.|..|-||....+... ....++.|...|...           +|.  +.+.+....+-|..
T Consensus       107 EVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V-----------~WH--Pt~dlL~S~SYDnT  173 (312)
T KOG0645|consen  107 EVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHV-----------IWH--PTEDLLFSCSYDNT  173 (312)
T ss_pred             ceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEE-----------EEc--CCcceeEEeccCCe
Confidence            999999999999 999999999999999865421 122333333333222           232  11122222222333


Q ss_pred             EEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHH
Q 008510          150 TKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDA  223 (563)
Q Consensus       150 ~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~  223 (563)
                      +++++..+          ...|..+             +.++||+ ..|++++| +.|..+.+.+.|.++++|..
T Consensus       174 Ik~~~~~~----------dddW~c~-------------~tl~g~~-~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~  224 (312)
T KOG0645|consen  174 IKVYRDED----------DDDWECV-------------QTLDGHE-NTVWSLAFDNIGSRLVSCSDDGTVSIWRL  224 (312)
T ss_pred             EEEEeecC----------CCCeeEE-------------EEecCcc-ceEEEEEecCCCceEEEecCCcceEeeee
Confidence            33332221          3455533             3355665 57899999 77888899999999998874

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.74  E-value=2.5e-16  Score=145.78  Aligned_cols=225  Identities=17%  Similarity=0.203  Sum_probs=165.4

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAK   77 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~   77 (563)
                      +|++|+||+.|.++.+|-. +|+.+.++.||++.|+|++++-+. .++||+.|.++++||  +|+++.++..+..|+.+.
T Consensus        21 eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~  100 (327)
T KOG0643|consen   21 EGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVD  100 (327)
T ss_pred             CCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEe
Confidence            6899999999999999988 999999999999999999999888 999999999999999  999999999999999999


Q ss_pred             EccCCcEEEEeCC------CcEEEEEcCCCc--eecee---eecc--------cccccceeEEeeccCCceEEEeCCCCc
Q 008510           78 FLENGDIVTACSD------GVTRIWTVHSDK--VADSL---ELEA--------YASELSQYKLCRKKVGGLKLEDLPGLE  138 (563)
Q Consensus        78 ~~p~g~i~sgs~D------g~Irvwd~~~~~--~~~~~---~~~~--------~~~~v~~~~~~~~~~~~i~~~d~~~~~  138 (563)
                      |+++|.++..+.|      +.|.+||++...  ....+   .+..        .-......++++..+|.|..||.+.+.
T Consensus       101 F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~  180 (327)
T KOG0643|consen  101 FSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGK  180 (327)
T ss_pred             eccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCc
Confidence            9999996555554      569999998432  11111   1111        122345778899999999999998763


Q ss_pred             eeee------------cccCCCeEEEEecCCCeEEEEEecccceEEEeC----------------cEeeCCCCCC-----
Q 008510          139 ALQI------------PGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLG----------------EVVDGPDDGM-----  185 (563)
Q Consensus       139 ~l~~------------~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g----------------~v~~~~~~~~-----  185 (563)
                      .+..            ..++|..+.+..+.| ..+.+||..+-...+..                .|+.+.+..+     
T Consensus       181 ~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~D-ttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTT  259 (327)
T KOG0643|consen  181 ELVDSDEEHSSKINDLQFSRDRTYFITGSKD-TTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTT  259 (327)
T ss_pred             eeeechhhhccccccccccCCcceEEecccC-ccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeee
Confidence            3321            245666666665555 66778887655443321                1111111100     


Q ss_pred             -----C--------------ceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHHHHHH
Q 008510          186 -----N--------------RPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAADKWL  228 (563)
Q Consensus       186 -----~--------------~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~~f~  228 (563)
                           +              ..-++||- +-|.+|++ |+|+...++.-|+.+++...++.|.
T Consensus       260 T~~r~GKFEArFyh~i~eEEigrvkGHF-GPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~YF  321 (327)
T KOG0643|consen  260 TSTRAGKFEARFYHLIFEEEIGRVKGHF-GPINSVAFHPDGKSYSSGGEDGYVRLHHFDSNYF  321 (327)
T ss_pred             ecccccchhhhHHHHHHHHHhccccccc-cCcceeEECCCCcccccCCCCceEEEEEeccchh
Confidence                 1              11144553 77899999 9999999999999888887666554

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.73  E-value=8.8e-17  Score=146.18  Aligned_cols=163  Identities=21%  Similarity=0.371  Sum_probs=132.1

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc----CCceeEEEe-cCCcEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK----DGVCVQSIE-HPGCVW   74 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd----~~~~~~~l~-h~~~V~   74 (563)
                      |...|++|+.|..|.+||+ +|+.++.+.||.+.|..|+|+.+. .++|||.|.++|+||    +.+++|.+. ..+.|.
T Consensus        70 Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~  149 (307)
T KOG0316|consen   70 DNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVS  149 (307)
T ss_pred             cccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCcee
Confidence            4567999999999999999 999999999999999999999988 999999999999999    567888888 677999


Q ss_pred             EEEEccCCcEEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCCceeeec-cc
Q 008510           75 DAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLEALQIP-GT  145 (563)
Q Consensus        75 ~v~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~~l~~~-g~  145 (563)
                      +|..... .|++|+.||++|.||+|.|+...    ..+..++.        .+.+.+.-++.+++.|-.+++.+... ||
T Consensus       150 Si~v~~h-eIvaGS~DGtvRtydiR~G~l~s----Dy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGh  224 (307)
T KOG0316|consen  150 SIDVAEH-EIVAGSVDGTVRTYDIRKGTLSS----DYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGH  224 (307)
T ss_pred             EEEeccc-EEEeeccCCcEEEEEeecceeeh----hhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccc
Confidence            9988532 49999999999999999998432    11222222        44556667789999999988888776 77


Q ss_pred             CCCeE-----------EEEecCCCeEEEEEecccc
Q 008510          146 NAGQT-----------KVVREGDNGVAYSWDMKEQ  169 (563)
Q Consensus       146 ~dg~~-----------~l~~~~~~~~~~~wd~~~~  169 (563)
                      +.-++           .++.++.++.+|.||....
T Consensus       225 kn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~  259 (307)
T KOG0316|consen  225 KNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE  259 (307)
T ss_pred             ccceeeeeeeecccceeEEeccCCceEEEEEeccc
Confidence            76554           4556666778888886544

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=3.1e-17  Score=149.91  Aligned_cols=198  Identities=21%  Similarity=0.316  Sum_probs=145.5

Q ss_pred             CCEEEEEECCCcEEEEcC--CC--ceeEEEecCCCcEEEEEEc-C-CC-eEEEEeCCCcEEEEc--CCcee--EEEe-cC
Q 008510            3 GVGIISASHDCTIRLWAL--TG--QVLMEMVGHTAIVYSIDSH-A-SG-LIVSGSEDRFAKIWK--DGVCV--QSIE-HP   70 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~--~g--~~i~~l~gH~~~V~~v~~~-p-~g-~l~s~s~D~tvriWd--~~~~~--~~l~-h~   70 (563)
                      |.+|+|||.|++|||+..  ++  +.+.+|.||.++|+.++|. | -| .|+||+.||.|.||.  .++-.  .... |.
T Consensus        23 gkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~  102 (299)
T KOG1332|consen   23 GKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHS  102 (299)
T ss_pred             cceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhc
Confidence            789999999999999999  44  6889999999999999995 4 46 999999999999999  44322  2233 88


Q ss_pred             CcEEEEEEccCCc---EEEEeCCCcEEEEEcCCC-ceeceeeecccccccceeEEeeccCCceEEEeCCCCceeeecccC
Q 008510           71 GCVWDAKFLENGD---IVTACSDGVTRIWTVHSD-KVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTN  146 (563)
Q Consensus        71 ~~V~~v~~~p~g~---i~sgs~Dg~Irvwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~  146 (563)
                      .+|.+|+|-|.+.   ++++|+||.|+|++.++. .........+|...+.....+....        +  ..+...+..
T Consensus       103 ~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~--------~--g~~~~~~~~  172 (299)
T KOG1332|consen  103 ASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASA--------P--GSLVDQGPA  172 (299)
T ss_pred             ccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCC--------C--ccccccCcc
Confidence            9999999999765   799999999999999876 3222233344554454444222111        0  012222334


Q ss_pred             CCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCC----CeeeeecCCCCCChh
Q 008510          147 AGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDG----EPTRKLPYNRSDNPY  221 (563)
Q Consensus       147 dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg----~~~~~~~~n~~~~~w  221 (563)
                      ++..+++..+.+..+.+|....+.|..-             ..++||. |+|.+|.+ |.-    ..+++.+.|+++-+|
T Consensus       173 ~~~krlvSgGcDn~VkiW~~~~~~w~~e-------------~~l~~H~-dwVRDVAwaP~~gl~~s~iAS~SqDg~viIw  238 (299)
T KOG1332|consen  173 AKVKRLVSGGCDNLVKIWKFDSDSWKLE-------------RTLEGHK-DWVRDVAWAPSVGLPKSTIASCSQDGTVIIW  238 (299)
T ss_pred             cccceeeccCCccceeeeecCCcchhhh-------------hhhhhcc-hhhhhhhhccccCCCceeeEEecCCCcEEEE
Confidence            5567888888888889999888877632             2366776 99999998 432    458899999999888


Q ss_pred             HHH
Q 008510          222 DAA  224 (563)
Q Consensus       222 ~~a  224 (563)
                      ...
T Consensus       239 t~~  241 (299)
T KOG1332|consen  239 TKD  241 (299)
T ss_pred             Eec
Confidence            864

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=4.7e-17  Score=171.34  Aligned_cols=206  Identities=20%  Similarity=0.299  Sum_probs=137.9

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEE
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAK   77 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~   77 (563)
                      +.+|+|||.|..||+|+. +.+|+-++.||-++|..+.|++.- .++|+|.|.|||||+  +++|+..++ |...|.|..
T Consensus        63 qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAq  142 (1202)
T KOG0292|consen   63 QPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQ  142 (1202)
T ss_pred             CCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeec
Confidence            468999999999999999 889999999999999999999987 899999999999999  999999999 999999999


Q ss_pred             EccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEe----eccCCceEEEeCCCC--ceeeecccCCCeE
Q 008510           78 FLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLC----RKKVGGLKLEDLPGL--EALQIPGTNAGQT  150 (563)
Q Consensus        78 ~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~i~~~d~~~~--~~l~~~g~~dg~~  150 (563)
                      |+|..+ |+++|.|.+|||||+..-|.-...+- ++++.+......    ++.| .|-..-+.|.  .+--..+|+.-. 
T Consensus       143 FhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg-~~e~~~~~~~~~~dLfg~~D-aVVK~VLEGHDRGVNwaAfhpTlp-  219 (1202)
T KOG0292|consen  143 FHPTEDLIVSASLDQTVRVWDISGLRKKNKAPG-SLEDQMRGQQGNSDLFGQTD-AVVKHVLEGHDRGVNWAAFHPTLP-  219 (1202)
T ss_pred             cCCccceEEEecccceEEEEeecchhccCCCCC-CchhhhhccccchhhcCCcC-eeeeeeecccccccceEEecCCcc-
Confidence            999877 99999999999999875442211111 222222211110    0111 1111111110  011111222111 


Q ss_pred             EEEecCCCeEEEEEecc-cceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHHHH
Q 008510          151 KVVREGDNGVAYSWDMK-EQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAADK  226 (563)
Q Consensus       151 ~l~~~~~~~~~~~wd~~-~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~~  226 (563)
                      .+++++|+..+.+|.++ +..|+.- .             -.|| |+.|-++-| +....+++-+-|+++++|+...+
T Consensus       220 liVSG~DDRqVKlWrmnetKaWEvD-t-------------crgH-~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR  282 (1202)
T KOG0292|consen  220 LIVSGADDRQVKLWRMNETKAWEVD-T-------------CRGH-YNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR  282 (1202)
T ss_pred             eEEecCCcceeeEEEeccccceeeh-h-------------hhcc-cCCcceEEecCccceeEecCCCccEEEEecccc
Confidence            23344444555666654 4557632 1             1233 466777777 55667888888888888887644

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.73  E-value=2.4e-16  Score=147.61  Aligned_cols=181  Identities=18%  Similarity=0.305  Sum_probs=144.3

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-C-C------ceeEEEe-cC
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-D-G------VCVQSIE-HP   70 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~-~------~~~~~l~-h~   70 (563)
                      |.++++|+|.||.+.|||. +...++-+.-...+|..++|+|.| .+++||-|..+.||+ + .      +..+.+. |+
T Consensus        66 Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHt  145 (343)
T KOG0286|consen   66 DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHT  145 (343)
T ss_pred             CcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCcc
Confidence            6789999999999999999 888788888889999999999999 899999999999999 2 2      2334455 99


Q ss_pred             CcEEEEEEccCCcEEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceeeecccC-CCe
Q 008510           71 GCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTN-AGQ  149 (563)
Q Consensus        71 ~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~-dg~  149 (563)
                      +.+.|+.|.+|+.|+||+.|.+.-+||+.+++...  .+.+|.                       +.++.....+ ++.
T Consensus       146 gylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~--~f~GH~-----------------------gDV~slsl~p~~~n  200 (343)
T KOG0286|consen  146 GYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQ--VFHGHT-----------------------GDVMSLSLSPSDGN  200 (343)
T ss_pred             ceeEEEEEcCCCceEecCCCceEEEEEcccceEEE--EecCCc-----------------------ccEEEEecCCCCCC
Confidence            99999999999889999999999999999998332  222222                       2222222222 555


Q ss_pred             EEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHH
Q 008510          150 TKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAA  224 (563)
Q Consensus       150 ~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a  224 (563)
                      +.+..+- +..+++||.+.+.               .++.|.||+.| |.+|.| |+|..+.+++-|.+.+.|+..
T Consensus       201 tFvSg~c-D~~aklWD~R~~~---------------c~qtF~ghesD-INsv~ffP~G~afatGSDD~tcRlyDlR  259 (343)
T KOG0286|consen  201 TFVSGGC-DKSAKLWDVRSGQ---------------CVQTFEGHESD-INSVRFFPSGDAFATGSDDATCRLYDLR  259 (343)
T ss_pred             eEEeccc-ccceeeeeccCcc---------------eeEeecccccc-cceEEEccCCCeeeecCCCceeEEEeec
Confidence            5544444 4778899976652               56679999966 899999 999999999999999999974

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.72  E-value=6.8e-17  Score=157.37  Aligned_cols=100  Identities=21%  Similarity=0.312  Sum_probs=91.3

Q ss_pred             CCCEEEEEECCCcEEEEcC--CC--ceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecC--Cc
Q 008510            2 PGVGIISASHDCTIRLWAL--TG--QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHP--GC   72 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~--~g--~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~--~~   72 (563)
                      +|+++||+|.|.|.-+|.+  ++  +..+++.||..+|..+.|+||. ++++||.|..+++||  +|.+.+.+.+.  .+
T Consensus       235 nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S  314 (519)
T KOG0293|consen  235 NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFS  314 (519)
T ss_pred             CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCC
Confidence            6899999999999999998  33  4688999999999999999998 999999999999999  88888888854  69


Q ss_pred             EEEEEEccCCc-EEEEeCCCcEEEEEcCCC
Q 008510           73 VWDAKFLENGD-IVTACSDGVTRIWTVHSD  101 (563)
Q Consensus        73 V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~  101 (563)
                      +.+++|.|||. +++|+.|+.|..||++..
T Consensus       315 ~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn  344 (519)
T KOG0293|consen  315 VSSCAWCPDGFRFVTGSPDRTIIMWDLDGN  344 (519)
T ss_pred             cceeEEccCCceeEecCCCCcEEEecCCcc
Confidence            99999999998 999999999999998753

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.72  E-value=2.2e-16  Score=168.27  Aligned_cols=202  Identities=25%  Similarity=0.371  Sum_probs=153.1

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEEE
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKF   78 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~~   78 (563)
                      ++.+++||.|.|+|+||. +|+|..++.||++.|.++...+. .+++||.|.+|++|+  ++.+++++. |.+.|.+|..
T Consensus       261 ~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~-~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~  339 (537)
T KOG0274|consen  261 GDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPF-LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQL  339 (537)
T ss_pred             CCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCc-eEeeccCCceEEEEeccCcceEEEeccccccEEEEEe
Confidence            688999999999999999 99999999999999999987654 788999999999999  799999999 9999999999


Q ss_pred             ccCCcEEEEeCCCcEEEEEcCCCceeceeeecccccccc-------eeEEeeccCCceEEEeCCCC-ceeeec-ccCC--
Q 008510           79 LENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELS-------QYKLCRKKVGGLKLEDLPGL-EALQIP-GTNA--  147 (563)
Q Consensus        79 ~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~-------~~~~~~~~~~~i~~~d~~~~-~~l~~~-g~~d--  147 (563)
                      . .+.+++|+.|++|+|||..++++..  .+.+|...|.       ...+++..|+.|++||+.+. ..+... ++..  
T Consensus       340 ~-~~~lvsgs~d~~v~VW~~~~~~cl~--sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v  416 (537)
T KOG0274|consen  340 D-EPLLVSGSYDGTVKVWDPRTGKCLK--SLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLV  416 (537)
T ss_pred             c-CCEEEEEecCceEEEEEhhhceeee--eecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCcccc
Confidence            7 3349999999999999999888554  3444555444       34556778899999999988 554443 4332  


Q ss_pred             ------CeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEcCCCCeeeeecCCCCCChh
Q 008510          148 ------GQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPY  221 (563)
Q Consensus       148 ------g~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~~dg~~~~~~~~n~~~~~w  221 (563)
                            +...+....| +.+.+||..++...               +.+.+.+...|..+... ...++....|++...|
T Consensus       417 ~~l~~~~~~Lvs~~aD-~~Ik~WD~~~~~~~---------------~~~~~~~~~~v~~l~~~-~~~il~s~~~~~~~l~  479 (537)
T KOG0274|consen  417 SSLLLRDNFLVSSSAD-GTIKLWDAEEGECL---------------RTLEGRHVGGVSALALG-KEEILCSSDDGSVKLW  479 (537)
T ss_pred             cccccccceeEecccc-ccEEEeecccCcee---------------eeeccCCcccEEEeecC-cceEEEEecCCeeEEE
Confidence                  2233333333 56778876665432               22344333556666553 2458888899999999


Q ss_pred             HHHH
Q 008510          222 DAAD  225 (563)
Q Consensus       222 ~~a~  225 (563)
                      ++..
T Consensus       480 dl~~  483 (537)
T KOG0274|consen  480 DLRS  483 (537)
T ss_pred             eccc
Confidence            7753

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.72  E-value=8.7e-17  Score=151.44  Aligned_cols=199  Identities=19%  Similarity=0.246  Sum_probs=146.0

Q ss_pred             CCCEEEEEECCCcEEEEcCC-------------C------ceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-C
Q 008510            2 PGVGIISASHDCTIRLWALT-------------G------QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-D   60 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~~-------------g------~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~   60 (563)
                      ||.++++||.|..|||.|++             |      -.++++..|.+.|.++.|+|.. .++||+.|++|+++| +
T Consensus       123 DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfs  202 (430)
T KOG0640|consen  123 DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFS  202 (430)
T ss_pred             CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecc
Confidence            78999999999999999973             1      2578999999999999999988 999999999999999 3


Q ss_pred             C----ceeEEEecCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceece-eeeccccccc--------ceeEEeeccC
Q 008510           61 G----VCVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADS-LELEAYASEL--------SQYKLCRKKV  126 (563)
Q Consensus        61 ~----~~~~~l~h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~-~~~~~~~~~v--------~~~~~~~~~~  126 (563)
                      .    +....++....|.+++|+|.|+ ++.|...-++|+||+.+.++.-. .+-..+.+.+        ..+.++++.|
T Consensus       203 K~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkD  282 (430)
T KOG0640|consen  203 KTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKD  282 (430)
T ss_pred             cHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccC
Confidence            2    3344555566899999999999 78888888999999999875422 2223333333        3556788999


Q ss_pred             CceEEEeCCCC-------------ceeeecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCC---Cceee
Q 008510          127 GGLKLEDLPGL-------------EALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGM---NRPIL  190 (563)
Q Consensus       127 ~~i~~~d~~~~-------------~~l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~---~~~~~  190 (563)
                      |.|++||--..             ++-...++++|.+.+..+.| .+++.|+..++...+.  ..++...+.   +.+..
T Consensus       283 G~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~D-S~vkLWEi~t~R~l~~--YtGAg~tgrq~~rtqAv  359 (430)
T KOG0640|consen  283 GAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKD-STVKLWEISTGRMLKE--YTGAGTTGRQKHRTQAV  359 (430)
T ss_pred             CcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCc-ceeeeeeecCCceEEE--EecCCcccchhhhhhhh
Confidence            99999997432             33334478888887766665 7889999988865433  333322221   22233


Q ss_pred             cCcccCcEEEEEc
Q 008510          191 DGIQYDYVFDVDI  203 (563)
Q Consensus       191 ~g~~~d~v~~vd~  203 (563)
                      -.|..|||...|-
T Consensus       360 FNhtEdyVl~pDE  372 (430)
T KOG0640|consen  360 FNHTEDYVLFPDE  372 (430)
T ss_pred             hcCccceEEcccc
Confidence            3456688876654

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.72  E-value=3.3e-17  Score=159.50  Aligned_cols=100  Identities=30%  Similarity=0.572  Sum_probs=93.7

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEE
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAK   77 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~   77 (563)
                      +..|+|||.||+|+|||. ..+..+.+.||..-|.|++|+|.. .++|+|.|..|++||  +++|+.++. |...|..+.
T Consensus       192 DskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~  271 (464)
T KOG0284|consen  192 DSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVK  271 (464)
T ss_pred             CceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEE
Confidence            567999999999999999 777778889999999999999986 999999999999999  999999998 999999999


Q ss_pred             EccCCc-EEEEeCCCcEEEEEcCCCc
Q 008510           78 FLENGD-IVTACSDGVTRIWTVHSDK  102 (563)
Q Consensus        78 ~~p~g~-i~sgs~Dg~Irvwd~~~~~  102 (563)
                      |+|++. ++++|.|..+++||+++-+
T Consensus       272 f~~n~N~Llt~skD~~~kv~DiR~mk  297 (464)
T KOG0284|consen  272 FNPNGNWLLTGSKDQSCKVFDIRTMK  297 (464)
T ss_pred             EcCCCCeeEEccCCceEEEEehhHhH
Confidence            999999 9999999999999999654

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=1.5e-16  Score=162.14  Aligned_cols=132  Identities=20%  Similarity=0.334  Sum_probs=114.8

Q ss_pred             CEEEEEECCCcEEEEcCC--CceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510            4 VGIISASHDCTIRLWALT--GQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA   76 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~~--g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v   76 (563)
                      -+++|+|.|-+||+||.+  -.|.+++.||+.+|.+|+|+|..  .|+|||-|+|||||+  +..+..++. |...|.||
T Consensus       110 P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~V  189 (794)
T KOG0276|consen  110 PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCV  189 (794)
T ss_pred             CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceE
Confidence            478999999999999994  46899999999999999999975  899999999999999  777888888 99999999


Q ss_pred             EEccCCc---EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCC
Q 008510           77 KFLENGD---IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGL  137 (563)
Q Consensus        77 ~~~p~g~---i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~  137 (563)
                      .+-+.|+   +++|+.|.+|+|||..+..+.  ..+++|.+.++        ..++++++||++++|.-.+.
T Consensus       190 dyy~~gdkpylIsgaDD~tiKvWDyQtk~CV--~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty  259 (794)
T KOG0276|consen  190 DYYTGGDKPYLISGADDLTIKVWDYQTKSCV--QTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY  259 (794)
T ss_pred             EeccCCCcceEEecCCCceEEEeecchHHHH--HHhhcccccceEEEecCCCcEEEEecCCccEEEecCcce
Confidence            9999885   999999999999999998754  35566665554        45668999999999997655

>PTZ00420 coronin; Provisional

Probab=99.71  E-value=7.5e-16  Score=164.80  Aligned_cols=134  Identities=15%  Similarity=0.192  Sum_probs=101.9

Q ss_pred             EECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCC-C-eEEEEeCCCcEEEEc--CCc--------eeEEEe-cCCcEE
Q 008510            9 ASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHAS-G-LIVSGSEDRFAKIWK--DGV--------CVQSIE-HPGCVW   74 (563)
Q Consensus         9 ~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~-g-~l~s~s~D~tvriWd--~~~--------~~~~l~-h~~~V~   74 (563)
                      ||.++.|++|+. ...++..+.+|.+.|.+++|+|+ + .++|||.|++|+|||  ++.        ++..+. |...|.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~  129 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS  129 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence            667889999998 66778899999999999999997 5 899999999999999  321        233455 888999


Q ss_pred             EEEEccCCc--EEEEeCCCcEEEEEcCCCceeceeee----ccccccc-ceeEEeeccCCceEEEeCCCCceeee
Q 008510           75 DAKFLENGD--IVTACSDGVTRIWTVHSDKVADSLEL----EAYASEL-SQYKLCRKKVGGLKLEDLPGLEALQI  142 (563)
Q Consensus        75 ~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~~~----~~~~~~v-~~~~~~~~~~~~i~~~d~~~~~~l~~  142 (563)
                      +++|+|++.  +++|+.|++|++||+++++.......    ....-.. .....++..++.|++||++..+.+..
T Consensus       130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~t  204 (568)
T PTZ00420        130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASS  204 (568)
T ss_pred             EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEE
Confidence            999999887  57999999999999998874332211    1111111 23334456788999999998776543

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.70  E-value=1.3e-16  Score=164.56  Aligned_cols=199  Identities=21%  Similarity=0.318  Sum_probs=151.5

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEcCCceeEEEe-cCCcEEEEEEcc
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKDGVCVQSIE-HPGCVWDAKFLE   80 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd~~~~~~~l~-h~~~V~~v~~~p   80 (563)
                      +.++++|++|++|.+|.. .+.++.++.||.+.|+|++...++.++|||+|.|+|+|..+++..++. |+..||+|+..|
T Consensus        71 ~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~  150 (745)
T KOG0301|consen   71 KGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLP  150 (745)
T ss_pred             CcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecchhhhcccCCcchheeeeeecC
Confidence            456899999999999999 789999999999999999988787899999999999999888888887 999999999999


Q ss_pred             CCcEEEEeCCCcEEEEEcCCCceeceeeecccccccce-------eEEeeccCCceEEEeCCCCceeeecccCCCeEEEE
Q 008510           81 NGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQ-------YKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVV  153 (563)
Q Consensus        81 ~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~-------~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg~~~l~  153 (563)
                      .+.++|||.|.+||+|.-.+-  .  ..+.+|.+-|..       ..++.+.||.|+.|++.+...+...||..-.+.+.
T Consensus       151 e~~~vTgsaDKtIklWk~~~~--l--~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis  226 (745)
T KOG0301|consen  151 ENTYVTGSADKTIKLWKGGTL--L--KTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSIS  226 (745)
T ss_pred             CCcEEeccCcceeeeccCCch--h--hhhccchhheeeeEEecCCCeEeecCCceEEEEeccCceeeeeeccceEEEEEE
Confidence            989999999999999987432  1  234455555443       44577889999999996665555557766555444


Q ss_pred             ---------ecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHH
Q 008510          154 ---------REGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDA  223 (563)
Q Consensus       154 ---------~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~  223 (563)
                               .++.+..+.+|+..  .   ...+..          +.+.   -||++.+ ++|. +..++.|+-+++|..
T Consensus       227 ~~~~~~~Ivs~gEDrtlriW~~~--e---~~q~I~----------lPtt---siWsa~~L~NgD-Ivvg~SDG~VrVfT~  287 (745)
T KOG0301|consen  227 MALSDGLIVSTGEDRTLRIWKKD--E---CVQVIT----------LPTT---SIWSAKVLLNGD-IVVGGSDGRVRVFTV  287 (745)
T ss_pred             ecCCCCeEEEecCCceEEEeecC--c---eEEEEe----------cCcc---ceEEEEEeeCCC-EEEeccCceEEEEEe
Confidence                     33333444455532  1   112222          2222   2888888 7776 888999999998876


Q ss_pred             H
Q 008510          224 A  224 (563)
Q Consensus       224 a  224 (563)
                      .
T Consensus       288 ~  288 (745)
T KOG0301|consen  288 D  288 (745)
T ss_pred             c
Confidence            5

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.70  E-value=4.2e-15  Score=148.10  Aligned_cols=175  Identities=19%  Similarity=0.284  Sum_probs=128.4

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc---CCceeEEEecCCcEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK---DGVCVQSIEHPGCVWD   75 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd---~~~~~~~l~h~~~V~~   75 (563)
                      ++..|++||.|+.+++||+ ++.....+.||+++|.|.+|+|..  .++|||.||+||+||   .+..+.++.|..+|-+
T Consensus       122 d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~  201 (487)
T KOG0310|consen  122 DNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVES  201 (487)
T ss_pred             CCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceee
Confidence            5678999999999999999 555566899999999999999964  899999999999999   3367778889999999


Q ss_pred             EEEccCCcEEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceeeecccCCCeEEEEec
Q 008510           76 AKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVRE  155 (563)
Q Consensus        76 v~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg~~~l~~~  155 (563)
                      |.+.|.|.++..+....|||||+.+|.+... ....|...|.+..+..             .+.-...++-||.+++++.
T Consensus       202 vl~lpsgs~iasAgGn~vkVWDl~~G~qll~-~~~~H~KtVTcL~l~s-------------~~~rLlS~sLD~~VKVfd~  267 (487)
T KOG0310|consen  202 VLALPSGSLIASAGGNSVKVWDLTTGGQLLT-SMFNHNKTVTCLRLAS-------------DSTRLLSGSLDRHVKVFDT  267 (487)
T ss_pred             EEEcCCCCEEEEcCCCeEEEEEecCCceehh-hhhcccceEEEEEeec-------------CCceEeecccccceEEEEc
Confidence            9999998844444567999999997763321 2223444444444322             1122244677888888887


Q ss_pred             CCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCC
Q 008510          156 GDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSD  218 (563)
Q Consensus       156 ~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~  218 (563)
                      .+-.+++.|....                            -|.++++ +|++.+.-+--|+..
T Consensus       268 t~~Kvv~s~~~~~----------------------------pvLsiavs~dd~t~viGmsnGlv  303 (487)
T KOG0310|consen  268 TNYKVVHSWKYPG----------------------------PVLSIAVSPDDQTVVIGMSNGLV  303 (487)
T ss_pred             cceEEEEeeeccc----------------------------ceeeEEecCCCceEEEeccccee
Confidence            7777777777422                            2666666 666666666666543

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.70  E-value=3.7e-17  Score=149.79  Aligned_cols=219  Identities=22%  Similarity=0.220  Sum_probs=166.1

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAK   77 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~   77 (563)
                      +|-+|+|++.|+.-.+-+- +|.-+.++.||.+.|++.+.+.+. ..+|++.|-+.+|||  +|..++++.|...|.+++
T Consensus        28 ~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~a  107 (334)
T KOG0278|consen   28 DGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVA  107 (334)
T ss_pred             CceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEE
Confidence            4668999999999988888 899999999999999999988877 899999999999999  999999999999999999


Q ss_pred             EccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCCceeeec-----
Q 008510           78 FLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLEALQIP-----  143 (563)
Q Consensus        78 ~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~~l~~~-----  143 (563)
                      |+.|.. +++|+.+..+||||+...+ ++..++.++...+.        ..+++...+++|++||.++....+..     
T Consensus       108 f~~ds~~lltgg~ekllrvfdln~p~-App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~  186 (334)
T KOG0278|consen  108 FSQDSNYLLTGGQEKLLRVFDLNRPK-APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSP  186 (334)
T ss_pred             ecccchhhhccchHHHhhhhhccCCC-CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCC
Confidence            999988 9999999999999999877 55666666666655        34455678899999999987554432     


Q ss_pred             -----ccCCCeEEEEecCCCeEEEEEecccceEEEe----------------CcEeeCCCCCC----------Cceee-c
Q 008510          144 -----GTNAGQTKVVREGDNGVAYSWDMKEQKWDKL----------------GEVVDGPDDGM----------NRPIL-D  191 (563)
Q Consensus       144 -----g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~----------------g~v~~~~~~~~----------~~~~~-~  191 (563)
                           -+.||.+.....+  ..+..||.....-.+-                +.++.+..+..          ....| .
T Consensus       187 VtSlEvs~dG~ilTia~g--ssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nk  264 (334)
T KOG0278|consen  187 VTSLEVSQDGRILTIAYG--SSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNK  264 (334)
T ss_pred             CcceeeccCCCEEEEecC--ceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeeccc
Confidence                 4566766554433  3345677544322111                11111111100          11123 3


Q ss_pred             CcccCcEEEEEc-CCCCeeeeecCCCCCChhHHH
Q 008510          192 GIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAA  224 (563)
Q Consensus       192 g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a  224 (563)
                      ||. +-|.+|.| |||+..++++-|+++++|...
T Consensus       265 gh~-gpVhcVrFSPdGE~yAsGSEDGTirlWQt~  297 (334)
T KOG0278|consen  265 GHF-GPVHCVRFSPDGELYASGSEDGTIRLWQTT  297 (334)
T ss_pred             CCC-CceEEEEECCCCceeeccCCCceEEEEEec
Confidence            443 67889999 999999999999999999874

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.69  E-value=3.4e-14  Score=147.91  Aligned_cols=212  Identities=19%  Similarity=0.264  Sum_probs=161.1

Q ss_pred             CCEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CC-----ceeEEEe-cCCcEE
Q 008510            3 GVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DG-----VCVQSIE-HPGCVW   74 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~-----~~~~~l~-h~~~V~   74 (563)
                      .++++.++|.+.+|+|+..+---..+.||+..|.+++...+| .++|||.|.++++|. +.     -|+.... |.+.|.
T Consensus       336 ~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svg  415 (775)
T KOG0319|consen  336 ESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVG  415 (775)
T ss_pred             cceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccc
Confidence            478999999999999999443334889999999999977788 999999999999996 22     2333334 999999


Q ss_pred             EEEEccCCc--EEEEeCCCcEEEEEcCCCce-ec------eeeecccccccc--------eeEEeeccCCceEEEeCCCC
Q 008510           75 DAKFLENGD--IVTACSDGVTRIWTVHSDKV-AD------SLELEAYASELS--------QYKLCRKKVGGLKLEDLPGL  137 (563)
Q Consensus        75 ~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~-~~------~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~  137 (563)
                      +|+++..|-  ++++|.|.++++|++...+. ..      ......|...++        ....++++|.+.++|+++..
T Consensus       416 ava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~  495 (775)
T KOG0319|consen  416 AVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL  495 (775)
T ss_pred             eeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc
Confidence            999987776  89999999999999987321 11      112234554444        34456789999999999966


Q ss_pred             ceeeec-ccCCCeEEEEecCC---------CeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCC
Q 008510          138 EALQIP-GTNAGQTKVVREGD---------NGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDG  206 (563)
Q Consensus       138 ~~l~~~-g~~dg~~~l~~~~~---------~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg  206 (563)
                      ..+... ||+-|...+-++..         +..+.+|...++.+.               +.++||+ .-|+.+.| .+|
T Consensus       496 ~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSCl---------------kT~eGH~-~aVlra~F~~~~  559 (775)
T KOG0319|consen  496 RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCL---------------KTFEGHT-SAVLRASFIRNG  559 (775)
T ss_pred             eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceee---------------eeecCcc-ceeEeeeeeeCC
Confidence            665544 89888776655544         344556665554332               3488887 67999999 899


Q ss_pred             CeeeeecCCCCCChhHHHHHHHHh
Q 008510          207 EPTRKLPYNRSDNPYDAADKWLLK  230 (563)
Q Consensus       207 ~~~~~~~~n~~~~~w~~a~~f~~~  230 (563)
                      +.+.+...|+-+++|++...-|..
T Consensus       560 ~qliS~~adGliKlWnikt~eC~~  583 (775)
T KOG0319|consen  560 KQLISAGADGLIKLWNIKTNECEM  583 (775)
T ss_pred             cEEEeccCCCcEEEEeccchhhhh
Confidence            999999999999999998776553

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.69  E-value=3e-15  Score=150.13  Aligned_cols=153  Identities=16%  Similarity=0.283  Sum_probs=123.9

Q ss_pred             EEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe----cCCcEEEE
Q 008510            5 GIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE----HPGCVWDA   76 (563)
Q Consensus         5 ~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~----h~~~V~~v   76 (563)
                      +++|||.|++|-+|+- ..+.-.++..|..+|+||.|+||| .|+|.|.||++.+||  +++.+..+.    |.+.|.++
T Consensus       162 Ri~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfal  241 (603)
T KOG0318|consen  162 RIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFAL  241 (603)
T ss_pred             EEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEE
Confidence            6899999999999998 678888899999999999999999 999999999999999  888888886    99999999


Q ss_pred             EEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccc--ccc-----ceeEEeeccCCceEEEeCCCCceeeec-ccCC
Q 008510           77 KFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYA--SEL-----SQYKLCRKKVGGLKLEDLPGLEALQIP-GTNA  147 (563)
Q Consensus        77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~--~~v-----~~~~~~~~~~~~i~~~d~~~~~~l~~~-g~~d  147 (563)
                      +|+||+. ++|++.|.++||||+.+.++.....+..-.  ..+     ....++....|.|.+.+....+.+... ||..
T Consensus       242 sWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK  321 (603)
T KOG0318|consen  242 SWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNK  321 (603)
T ss_pred             EECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheeccccc
Confidence            9999998 999999999999999998866655443321  111     244556677789999988777665544 6655


Q ss_pred             CeEEEEecCC
Q 008510          148 GQTKVVREGD  157 (563)
Q Consensus       148 g~~~l~~~~~  157 (563)
                      +.+.+.-.++
T Consensus       322 ~ITaLtv~~d  331 (603)
T KOG0318|consen  322 SITALTVSPD  331 (603)
T ss_pred             ceeEEEEcCC
Confidence            5554444443

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.68  E-value=2.4e-15  Score=144.90  Aligned_cols=206  Identities=16%  Similarity=0.279  Sum_probs=157.0

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA   76 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v   76 (563)
                      ||.++|||+-+|.|+||.. +|....++.+--+.+.=++|+|.+ .++.|+.||.+.+|.  ++...+.+. |..++.+=
T Consensus       117 dgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G  196 (399)
T KOG0296|consen  117 DGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCG  196 (399)
T ss_pred             CceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccc
Confidence            6889999999999999999 788778887666677778999998 899999999999999  556667777 98999999


Q ss_pred             EEccCCc-EEEEeCCCcEEEEEcCCCceeceee------ecccc----------cc------------------------
Q 008510           77 KFLENGD-IVTACSDGVTRIWTVHSDKVADSLE------LEAYA----------SE------------------------  115 (563)
Q Consensus        77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~------~~~~~----------~~------------------------  115 (563)
                      .|.|+|+ +++|..||+|++|+..++++.....      .....          ..                        
T Consensus       197 ~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~  276 (399)
T KOG0296|consen  197 EFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVP  276 (399)
T ss_pred             cccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCc
Confidence            9999998 9999999999999999987554322      11000          00                        


Q ss_pred             ------------cc--------eeEEeeccCCceEEEeCCCCceeeecccCCCeEEEEecCC--------CeEEEEEecc
Q 008510          116 ------------LS--------QYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGD--------NGVAYSWDMK  167 (563)
Q Consensus       116 ------------v~--------~~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg~~~l~~~~~--------~~~~~~wd~~  167 (563)
                                  +.        ....++.-+|.|.+||+.....-...-+.+|.+++.+-++        ++.+++||.+
T Consensus       277 ~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaR  356 (399)
T KOG0296|consen  277 ELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDAR  356 (399)
T ss_pred             cccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeecc
Confidence                        00        1112345568888999877666666677778777666552        2455677766


Q ss_pred             cceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHH
Q 008510          168 EQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDA  223 (563)
Q Consensus       168 ~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~  223 (563)
                      +|+               -+..|.||. ..|+++.+ ++++.+.+.+-|.+-+++.+
T Consensus       357 tG~---------------l~~~y~GH~-~~Il~f~ls~~~~~vvT~s~D~~a~VF~v  397 (399)
T KOG0296|consen  357 TGQ---------------LKFTYTGHQ-MGILDFALSPQKRLVVTVSDDNTALVFEV  397 (399)
T ss_pred             ccc---------------eEEEEecCc-hheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence            653               345688887 66899998 99999999999998777654

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.68  E-value=5.2e-15  Score=168.76  Aligned_cols=212  Identities=13%  Similarity=0.185  Sum_probs=146.0

Q ss_pred             CCCEEEEEECCCcEEEEcCCC-----c----eeEEEecCCCcEEEEEEcCC-C-eEEEEeCCCcEEEEc--CCceeEEEe
Q 008510            2 PGVGIISASHDCTIRLWALTG-----Q----VLMEMVGHTAIVYSIDSHAS-G-LIVSGSEDRFAKIWK--DGVCVQSIE   68 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~~g-----~----~i~~l~gH~~~V~~v~~~p~-g-~l~s~s~D~tvriWd--~~~~~~~l~   68 (563)
                      +|+++++||.|++|++|+...     .    ++..+.+ ...|.+++|+|. + .+++++.|++|++||  +++.+..+.
T Consensus       494 dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~  572 (793)
T PLN00181        494 DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMK  572 (793)
T ss_pred             CCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence            578999999999999999721     1    2334443 467899999885 4 899999999999999  677778787


Q ss_pred             -cCCcEEEEEEcc-CCc-EEEEeCCCcEEEEEcCCCceeceeeecc------cccccceeEEeeccCCceEEEeCCCCce
Q 008510           69 -HPGCVWDAKFLE-NGD-IVTACSDGVTRIWTVHSDKVADSLELEA------YASELSQYKLCRKKVGGLKLEDLPGLEA  139 (563)
Q Consensus        69 -h~~~V~~v~~~p-~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~i~~~d~~~~~~  139 (563)
                       |.+.|++++|+| ++. +++|+.||+|++||++++..........      +...-....+++..++.|++||++....
T Consensus       573 ~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~  652 (793)
T PLN00181        573 EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL  652 (793)
T ss_pred             CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc
Confidence             999999999997 677 8999999999999999876443221110      1111234566778899999999976542


Q ss_pred             -e-eecccCCCeEEEEec--------CCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCe
Q 008510          140 -L-QIPGTNAGQTKVVRE--------GDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEP  208 (563)
Q Consensus       140 -l-~~~g~~dg~~~l~~~--------~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~  208 (563)
                       + ...+|......+.+.        +.++.+.+||...+.       ..  ........+.||. ..+..+.+ ++|..
T Consensus       653 ~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~-------~~--~~~~~l~~~~gh~-~~i~~v~~s~~~~~  722 (793)
T PLN00181        653 PLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSI-------SG--INETPLHSFMGHT-NVKNFVGLSVSDGY  722 (793)
T ss_pred             cceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCc-------cc--cCCcceEEEcCCC-CCeeEEEEcCCCCE
Confidence             2 223554433322222        222344556543221       00  0011234567776 56778888 78889


Q ss_pred             eeeecCCCCCChhHHH
Q 008510          209 TRKLPYNRSDNPYDAA  224 (563)
Q Consensus       209 ~~~~~~n~~~~~w~~a  224 (563)
                      +++++.|+.+.+|+..
T Consensus       723 lasgs~D~~v~iw~~~  738 (793)
T PLN00181        723 IATGSETNEVFVYHKA  738 (793)
T ss_pred             EEEEeCCCEEEEEECC
Confidence            9999999999999864

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.67  E-value=5.3e-15  Score=148.43  Aligned_cols=224  Identities=21%  Similarity=0.217  Sum_probs=144.3

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEe---cCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeE---------
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMV---GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQ---------   65 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~---gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~---------   65 (563)
                      ||++|+|.|.||+|.+||- +|+.+..+.   +|.+.|++++|+||+ +++|+|.|.++||||  +.++++         
T Consensus       201 DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~  280 (603)
T KOG0318|consen  201 DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVE  280 (603)
T ss_pred             CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchh
Confidence            6899999999999999999 999999998   899999999999999 999999999999999  433322         


Q ss_pred             ----------------------------------EEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceec----
Q 008510           66 ----------------------------------SIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVAD----  105 (563)
Q Consensus        66 ----------------------------------~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~----  105 (563)
                                                        ++. |...|.+++.+|+|. |.+|+.||.|.-|+..++..-+    
T Consensus       281 dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~  360 (603)
T KOG0318|consen  281 DQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGK  360 (603)
T ss_pred             ceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccc
Confidence                                              223 677899999999999 9999999999999998876321    


Q ss_pred             --eeeecccccccceeEEeeccCCceEEEeCCCCce------------eeecccCCCeEEEEecCCCeEEEEEecccceE
Q 008510          106 --SLELEAYASELSQYKLCRKKVGGLKLEDLPGLEA------------LQIPGTNAGQTKVVREGDNGVAYSWDMKEQKW  171 (563)
Q Consensus       106 --~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~------------l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w  171 (563)
                        ...+..+...-....++..-|..+++.++.+...            ....-..+|.+.++.+-.+.+++ -+.+.-.-
T Consensus       361 ~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l-~~~~~~~~  439 (603)
T KOG0318|consen  361 GHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLL-QDQTKVSS  439 (603)
T ss_pred             cccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEE-ecCCccee
Confidence              1122222222223444555666777765532211            11112223323222222212211 11100000


Q ss_pred             EEe------------Cc--EeeCCCCCCCcee--ecCc----------ccCcEEEEEc-CCCCeeeeecCCCCCChhHHH
Q 008510          172 DKL------------GE--VVDGPDDGMNRPI--LDGI----------QYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAA  224 (563)
Q Consensus       172 ~~~------------g~--v~~~~~~~~~~~~--~~g~----------~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a  224 (563)
                      ..+            +.  .+++..  ...++  +.|.          +...+.+|.+ +||..++..--++.+-+|+++
T Consensus       440 ~~~~y~~s~vAv~~~~~~vaVGG~D--gkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~  517 (603)
T KOG0318|consen  440 IPIGYESSAVAVSPDGSEVAVGGQD--GKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVA  517 (603)
T ss_pred             eccccccceEEEcCCCCEEEEeccc--ceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcc
Confidence            000            11  111110  01111  1221          1245778999 999999999999999999999


Q ss_pred             HHHH
Q 008510          225 DKWL  228 (563)
Q Consensus       225 ~~f~  228 (563)
                      .+|.
T Consensus       518 s~~~  521 (603)
T KOG0318|consen  518 SREV  521 (603)
T ss_pred             cCce
Confidence            8876

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.67  E-value=1.2e-16  Score=155.54  Aligned_cols=205  Identities=17%  Similarity=0.195  Sum_probs=150.8

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe-c-CCcEEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE-H-PGCVWDA   76 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~-h-~~~V~~v   76 (563)
                      +|++|++|+..|-..+|+. .......++.|.+.|.++.|+++| .++||..||.||+|+ .-+.++.++ | ...|+++
T Consensus       107 eGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdl  186 (464)
T KOG0284|consen  107 EGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDL  186 (464)
T ss_pred             CCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhhee
Confidence            4799999999999999998 333333467899999999999999 999999999999999 777777777 4 4799999


Q ss_pred             EEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccccc--------ceeEEeeccCCceEEEeCCCCceeeec-ccC
Q 008510           77 KFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL--------SQYKLCRKKVGGLKLEDLPGLEALQIP-GTN  146 (563)
Q Consensus        77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v--------~~~~~~~~~~~~i~~~d~~~~~~l~~~-g~~  146 (563)
                      +|+|+.. +++++.||+|+|||.+..+...  .+.+|.-.|        .+.+++++.|..|++||-++.+.+... +|+
T Consensus       187 afSpnDskF~t~SdDg~ikiWdf~~~kee~--vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HK  264 (464)
T KOG0284|consen  187 AFSPNDSKFLTCSDDGTIKIWDFRMPKEER--VLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHK  264 (464)
T ss_pred             ccCCCCceeEEecCCCeEEEEeccCCchhh--eeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhcc
Confidence            9999765 9999999999999998776433  234444333        356678888899999999988776554 666


Q ss_pred             CCeEEEEecCCCe---------EEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-C-CCCeeeeecCC
Q 008510          147 AGQTKVVREGDNG---------VAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-G-DGEPTRKLPYN  215 (563)
Q Consensus       147 dg~~~l~~~~~~~---------~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~-dg~~~~~~~~n  215 (563)
                      .-...+.+..++.         .+.++|...               ....+.|.||+ +.|.++.+ + .-....++.+|
T Consensus       265 ntVl~~~f~~n~N~Llt~skD~~~kv~DiR~---------------mkEl~~~r~Hk-kdv~~~~WhP~~~~lftsgg~D  328 (464)
T KOG0284|consen  265 NTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT---------------MKELFTYRGHK-KDVTSLTWHPLNESLFTSGGSD  328 (464)
T ss_pred             ceEEEEEEcCCCCeeEEccCCceEEEEehhH---------------hHHHHHhhcch-hhheeeccccccccceeeccCC
Confidence            6555555554432         222333221               11345577777 55777777 3 33346677788


Q ss_pred             CCCChhHHH
Q 008510          216 RSDNPYDAA  224 (563)
Q Consensus       216 ~~~~~w~~a  224 (563)
                      +++..|.+-
T Consensus       329 gsvvh~~v~  337 (464)
T KOG0284|consen  329 GSVVHWVVG  337 (464)
T ss_pred             CceEEEecc
Confidence            888888775

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=3.8e-15  Score=157.23  Aligned_cols=138  Identities=25%  Similarity=0.385  Sum_probs=116.4

Q ss_pred             EEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCc-------------------
Q 008510            5 GIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGV-------------------   62 (563)
Q Consensus         5 ~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~-------------------   62 (563)
                      +++|||.|-|||||++ +++|+..+.||..+|.|..|+|.. .++|+|-|.|||||| +|-                   
T Consensus       107 WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~  186 (1202)
T KOG0292|consen  107 WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQG  186 (1202)
T ss_pred             eEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhcccc
Confidence            6899999999999999 999999999999999999999966 999999999999999 210                   


Q ss_pred             -----------eeEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccccccee--------EE
Q 008510           63 -----------CVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQY--------KL  121 (563)
Q Consensus        63 -----------~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~--------~~  121 (563)
                                 ..+.+. |...|.-++|+|.-. |++|+.|..|++|-....+.-..+...+|.+.|++.        ++
T Consensus       187 ~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIl  266 (1202)
T KOG0292|consen  187 NSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLIL  266 (1202)
T ss_pred             chhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeE
Confidence                       013334 888999999999877 899999999999999887766667777888777654        45


Q ss_pred             eeccCCceEEEeCCCCceeee
Q 008510          122 CRKKVGGLKLEDLPGLEALQI  142 (563)
Q Consensus       122 ~~~~~~~i~~~d~~~~~~l~~  142 (563)
                      +.++|+.|++||+.....++.
T Consensus       267 SnsEDksirVwDm~kRt~v~t  287 (1202)
T KOG0292|consen  267 SNSEDKSIRVWDMTKRTSVQT  287 (1202)
T ss_pred             ecCCCccEEEEecccccceee
Confidence            778899999999976655433

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.67  E-value=4.2e-16  Score=152.14  Aligned_cols=205  Identities=22%  Similarity=0.300  Sum_probs=158.6

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAK   77 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~   77 (563)
                      ++.+++++++|+.+++|++ +++...++.||++.|+++.|.... .+++|+.|+++|+||  ...|..++-....+..|.
T Consensus       230 ~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~  309 (459)
T KOG0288|consen  230 DNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIV  309 (459)
T ss_pred             CCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceE
Confidence            5788999999999999999 889999999999999999998776 799999999999999  778888876555777777


Q ss_pred             EccCCcEEEEeCCCcEEEEEcCCCceeceeeecccccccc-----eeEEeeccCCceEEEeCCCCceeee----------
Q 008510           78 FLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELS-----QYKLCRKKVGGLKLEDLPGLEALQI----------  142 (563)
Q Consensus        78 ~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~~i~~~d~~~~~~l~~----------  142 (563)
                      .+ ...+++|=.|++||+||.++.......++.+...++.     ...++...+..+++.|+++.++...          
T Consensus       310 ~~-~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~as  388 (459)
T KOG0288|consen  310 CS-ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCAS  388 (459)
T ss_pred             ec-ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccccc
Confidence            66 2238889999999999999988666555554333322     2334557788999999988765432          


Q ss_pred             -----cccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCC
Q 008510          143 -----PGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNR  216 (563)
Q Consensus       143 -----~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~  216 (563)
                           .++++|.+...++.| +.+|+|+..+++.+++...-+.              ..-|+++.| +.|.+++...-+.
T Consensus       389 DwtrvvfSpd~~YvaAGS~d-gsv~iW~v~tgKlE~~l~~s~s--------------~~aI~s~~W~~sG~~Llsadk~~  453 (459)
T KOG0288|consen  389 DWTRVVFSPDGSYVAAGSAD-GSVYIWSVFTGKLEKVLSLSTS--------------NAAITSLSWNPSGSGLLSADKQK  453 (459)
T ss_pred             ccceeEECCCCceeeeccCC-CcEEEEEccCceEEEEeccCCC--------------CcceEEEEEcCCCchhhcccCCc
Confidence                 256677776666665 6679999999888766433221              114899999 8999999998888


Q ss_pred             CCChhH
Q 008510          217 SDNPYD  222 (563)
Q Consensus       217 ~~~~w~  222 (563)
                      ....|.
T Consensus       454 ~v~lW~  459 (459)
T KOG0288|consen  454 AVTLWT  459 (459)
T ss_pred             ceEecC
Confidence            887773

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.67  E-value=1.6e-16  Score=150.30  Aligned_cols=106  Identities=28%  Similarity=0.509  Sum_probs=98.6

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEe-cCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMV-GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWD   75 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~-gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~   75 (563)
                      |...+++|+.||.|++|.+ +|+|++.+. .|+..|+|+.|+.|+ .+.|+|.|.++||.-  +|+++..++ |...|..
T Consensus       274 DsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~  353 (508)
T KOG0275|consen  274 DSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNE  353 (508)
T ss_pred             cHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccc
Confidence            3467899999999999999 999999998 899999999999998 999999999999999  999999999 9999999


Q ss_pred             EEEccCCc-EEEEeCCCcEEEEEcCCCceecee
Q 008510           76 AKFLENGD-IVTACSDGVTRIWTVHSDKVADSL  107 (563)
Q Consensus        76 v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~  107 (563)
                      ..|.++|. |+++++||+|+||+.++..+....
T Consensus       354 a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tf  386 (508)
T KOG0275|consen  354 ATFTDDGHHIISASSDGTVKVWHGKTTECLSTF  386 (508)
T ss_pred             eEEcCCCCeEEEecCCccEEEecCcchhhhhhc
Confidence            99999999 999999999999999988765443

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.67  E-value=1.2e-15  Score=144.32  Aligned_cols=209  Identities=18%  Similarity=0.204  Sum_probs=148.7

Q ss_pred             CCCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC---eEEEEeCCCcEEEEc--CCceeEEEe-cCCcE
Q 008510            1 MPGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG---LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCV   73 (563)
Q Consensus         1 ~~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g---~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V   73 (563)
                      .+|.+++|||+|.+|+|||+ ....+..+-.|.+.|+++.|.+.-   .+++|++||.|.+|+  ...++.++. |.+.|
T Consensus        51 Vs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~V  130 (362)
T KOG0294|consen   51 VSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQV  130 (362)
T ss_pred             ecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccccc
Confidence            36889999999999999999 677788888999999999998864   799999999999999  778999999 99999


Q ss_pred             EEEEEccCCcE-EEEeCCCcEEEEEcCCCceeceeeecccccccc----eeEEeeccCCceEEEeCCCCceeeeccc---
Q 008510           74 WDAKFLENGDI-VTACSDGVTRIWTVHSDKVADSLELEAYASELS----QYKLCRKKVGGLKLEDLPGLEALQIPGT---  145 (563)
Q Consensus        74 ~~v~~~p~g~i-~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~----~~~~~~~~~~~i~~~d~~~~~~l~~~g~---  145 (563)
                      +.++.+|.|++ ++.+.|+.+|.|++-.||.+....+......+.    +-.+.......|.+|.+....++.....   
T Consensus       131 t~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r  210 (362)
T KOG0294|consen  131 TDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKR  210 (362)
T ss_pred             ceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhcccc
Confidence            99999999994 688999999999999998665555443322211    1112222224666776654333221111   


Q ss_pred             ------CCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEE---cCCCCeeeeecCCC
Q 008510          146 ------NAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVD---IGDGEPTRKLPYNR  216 (563)
Q Consensus       146 ------~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd---~~dg~~~~~~~~n~  216 (563)
                            -++...++...+ ..+.+||-...               ..-..+.+|+ ..|-++.   .+++..+.+.+.|+
T Consensus       211 ~l~~~~l~~~~L~vG~d~-~~i~~~D~ds~---------------~~~~~~~AH~-~RVK~i~~~~~~~~~~lvTaSSDG  273 (362)
T KOG0294|consen  211 ILCATFLDGSELLVGGDN-EWISLKDTDSD---------------TPLTEFLAHE-NRVKDIASYTNPEHEYLVTASSDG  273 (362)
T ss_pred             ceeeeecCCceEEEecCC-ceEEEeccCCC---------------ccceeeecch-hheeeeEEEecCCceEEEEeccCc
Confidence                  123333333333 44445553221               1234466676 5565544   47889999999999


Q ss_pred             CCChhHHHHH
Q 008510          217 SDNPYDAADK  226 (563)
Q Consensus       217 ~~~~w~~a~~  226 (563)
                      .+.+|++...
T Consensus       274 ~I~vWd~~~~  283 (362)
T KOG0294|consen  274 FIKVWDIDME  283 (362)
T ss_pred             eEEEEEcccc
Confidence            9999998754

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.67  E-value=3.9e-16  Score=147.66  Aligned_cols=139  Identities=24%  Similarity=0.367  Sum_probs=117.6

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEE--------EecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLME--------MVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-   68 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~--------l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-   68 (563)
                      ||.++++||.||.|-+|+. +|+..+-        +.-|...|.|++|+.|. .+++|+.||.|+||.  +|.|++.+. 
T Consensus       224 DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdr  303 (508)
T KOG0275|consen  224 DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDR  303 (508)
T ss_pred             CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhh
Confidence            6899999999999999999 7865443        44688999999999998 999999999999999  999999997 


Q ss_pred             -cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccccc--------ceeEEeeccCCceEEEeCCCCc
Q 008510           69 -HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL--------SQYKLCRKKVGGLKLEDLPGLE  138 (563)
Q Consensus        69 -h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v--------~~~~~~~~~~~~i~~~d~~~~~  138 (563)
                       |+..|.|+.|+.|+. +++++.|.++|+--+++|++..  ++++|..-+        ...++++++||++++|+..+.+
T Consensus       304 AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LK--EfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Ktte  381 (508)
T KOG0275|consen  304 AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLK--EFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTE  381 (508)
T ss_pred             hhccCeeEEEEccCcchhhcccccceEEEeccccchhHH--HhcCccccccceEEcCCCCeEEEecCCccEEEecCcchh
Confidence             999999999999987 9999999999999999998543  233333222        2566788999999999998777


Q ss_pred             eeee
Q 008510          139 ALQI  142 (563)
Q Consensus       139 ~l~~  142 (563)
                      .+..
T Consensus       382 C~~T  385 (508)
T KOG0275|consen  382 CLST  385 (508)
T ss_pred             hhhh
Confidence            6543

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.67  E-value=1.6e-15  Score=150.25  Aligned_cols=155  Identities=17%  Similarity=0.277  Sum_probs=129.7

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA   76 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v   76 (563)
                      +.+.|++++.|+.|+|+.+ ..+++.++.||.+.|.++.|+|.| .|+|||.|+|+|||+  ...+.+.+. |...|..+
T Consensus       328 ~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~  407 (524)
T KOG0273|consen  328 SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTI  407 (524)
T ss_pred             cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeE
Confidence            4567999999999999999 668999999999999999999999 999999999999999  778888888 99999999


Q ss_pred             EEccCC---------c-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCCc
Q 008510           77 KFLENG---------D-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLE  138 (563)
Q Consensus        77 ~~~p~g---------~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~  138 (563)
                      .|+|+|         . +++++.|++|++||+..+.+..  .+..|...|.        .+..++..++++.+|+.+.+.
T Consensus       408 ~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~--~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~  485 (524)
T KOG0273|consen  408 KWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIH--TLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK  485 (524)
T ss_pred             eecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeE--eeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchh
Confidence            999843         2 7999999999999999998554  3445555544        445567788999999999988


Q ss_pred             eeeecccCCCeEEEEecCCC
Q 008510          139 ALQIPGTNAGQTKVVREGDN  158 (563)
Q Consensus       139 ~l~~~g~~dg~~~l~~~~~~  158 (563)
                      .+...+..+|.+.+.++.++
T Consensus       486 l~~s~~~~~~Ifel~Wn~~G  505 (524)
T KOG0273|consen  486 LVKSYQGTGGIFELCWNAAG  505 (524)
T ss_pred             eeEeecCCCeEEEEEEcCCC
Confidence            88887776776666555443

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=8.8e-16  Score=141.25  Aligned_cols=136  Identities=19%  Similarity=0.305  Sum_probs=112.3

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc---CCceeEEEe-cCCcEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK---DGVCVQSIE-HPGCVW   74 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd---~~~~~~~l~-h~~~V~   74 (563)
                      .++.++++|.|+|||+|+. .+..+.++.||.+.||...|+|..  .++++|.|+++++||   .|+.+- |. |...+.
T Consensus       116 ~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil  194 (311)
T KOG0277|consen  116 RRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEIL  194 (311)
T ss_pred             cceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeE
Confidence            3567899999999999999 688899999999999999999974  899999999999999   566655 66 888999


Q ss_pred             EEEEccCCc--EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEE---------eeccCCceEEEeCCCCce
Q 008510           75 DAKFLENGD--IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKL---------CRKKVGGLKLEDLPGLEA  139 (563)
Q Consensus        75 ~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~---------~~~~~~~i~~~d~~~~~~  139 (563)
                      |+.|+.-.+  ++||+.|+.||+||++.-+ .+..++.+|.-.|.+..+         +++.|-++++||...+..
T Consensus       195 ~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r-~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds  269 (311)
T KOG0277|consen  195 CCDWSKYNHNVLATGGVDNLVRGWDIRNLR-TPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS  269 (311)
T ss_pred             eecccccCCcEEEecCCCceEEEEehhhcc-ccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchh
Confidence            999998544  8999999999999999887 455666666655554443         456678899999875543

>PTZ00421 coronin; Provisional

Probab=99.66  E-value=1.2e-14  Score=154.62  Aligned_cols=138  Identities=14%  Similarity=0.221  Sum_probs=106.3

Q ss_pred             CCEEEEEECCCcEEEEcCCC-cee-------------EEEecCCCcEEEEEEcC-CC-eEEEEeCCCcEEEEc--CC---
Q 008510            3 GVGIISASHDCTIRLWALTG-QVL-------------MEMVGHTAIVYSIDSHA-SG-LIVSGSEDRFAKIWK--DG---   61 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~~g-~~i-------------~~l~gH~~~V~~v~~~p-~g-~l~s~s~D~tvriWd--~~---   61 (563)
                      +..+++|+.+..+..|+..| ..+             ..+.||.+.|++++|+| ++ .+++||.|++|++||  ++   
T Consensus        32 ~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~  111 (493)
T PTZ00421         32 CSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLT  111 (493)
T ss_pred             CCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccc
Confidence            46678888888888898732 222             24789999999999999 67 899999999999999  32   


Q ss_pred             ----ceeEEEe-cCCcEEEEEEccCC-c-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccC
Q 008510           62 ----VCVQSIE-HPGCVWDAKFLENG-D-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKV  126 (563)
Q Consensus        62 ----~~~~~l~-h~~~V~~v~~~p~g-~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~  126 (563)
                          .++..+. |...|++++|+|++ . +++|+.|++|++||+++++...  .+..+...+.        ...+++..|
T Consensus       112 ~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~--~l~~h~~~V~sla~spdG~lLatgs~D  189 (493)
T PTZ00421        112 QNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVE--VIKCHSDQITSLEWNLDGSLLCTTSKD  189 (493)
T ss_pred             cccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEE--EEcCCCCceEEEEEECCCCEEEEecCC
Confidence                2456666 88999999999976 4 8999999999999999886432  3333433332        345567789


Q ss_pred             CceEEEeCCCCceeee
Q 008510          127 GGLKLEDLPGLEALQI  142 (563)
Q Consensus       127 ~~i~~~d~~~~~~l~~  142 (563)
                      +.|++||++....+..
T Consensus       190 g~IrIwD~rsg~~v~t  205 (493)
T PTZ00421        190 KKLNIIDPRDGTIVSS  205 (493)
T ss_pred             CEEEEEECCCCcEEEE
Confidence            9999999987765543

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=1.8e-14  Score=136.88  Aligned_cols=207  Identities=15%  Similarity=0.180  Sum_probs=152.0

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEe--CCCcEEEEc--CCceeEEEe-cCCcEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGS--EDRFAKIWK--DGVCVQSIE-HPGCVW   74 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s--~D~tvriWd--~~~~~~~l~-h~~~V~   74 (563)
                      +|..+++|+.|-++++||. +|++++++..+...|..++|.... .++.++  +|.+||.-+  +.++++.+. |...|.
T Consensus        25 ~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~  104 (311)
T KOG1446|consen   25 DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVN  104 (311)
T ss_pred             CCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEE
Confidence            6899999999999999999 999999999998889999986654 444444  499999999  889999999 999999


Q ss_pred             EEEEccCCc-EEEEeCCCcEEEEEcCCCceecee-----eecccccccceeEEeeccC-CceEEEeCCCC----------
Q 008510           75 DAKFLENGD-IVTACSDGVTRIWTVHSDKVADSL-----ELEAYASELSQYKLCRKKV-GGLKLEDLPGL----------  137 (563)
Q Consensus        75 ~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~-~~i~~~d~~~~----------  137 (563)
                      +++.+|-++ +++++.|++||+||+|..++....     ++.++.  .....++.... ..|+++|++..          
T Consensus       105 sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfD--p~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i  182 (311)
T KOG1446|consen  105 SLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFD--PEGLIFALANGSELIKLYDLRSFDKGPFTTFSI  182 (311)
T ss_pred             EEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeEC--CCCcEEEEecCCCeEEEEEecccCCCCceeEcc
Confidence            999999888 999999999999999977643221     222332  23344443333 38999998633          


Q ss_pred             ------ceeeecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeee
Q 008510          138 ------EALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTR  210 (563)
Q Consensus       138 ------~~l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~  210 (563)
                            +.-...+++||...++.... ..+++-|.-.|.  ....+....          +.. ..-.+..+ |||+.++
T Consensus       183 ~~~~~~ew~~l~FS~dGK~iLlsT~~-s~~~~lDAf~G~--~~~tfs~~~----------~~~-~~~~~a~ftPds~Fvl  248 (311)
T KOG1446|consen  183 TDNDEAEWTDLEFSPDGKSILLSTNA-SFIYLLDAFDGT--VKSTFSGYP----------NAG-NLPLSATFTPDSKFVL  248 (311)
T ss_pred             CCCCccceeeeEEcCCCCEEEEEeCC-CcEEEEEccCCc--EeeeEeecc----------CCC-CcceeEEECCCCcEEE
Confidence                  22233478888888888776 556667766654  112222211          111 11145566 9999999


Q ss_pred             eecCCCCCChhHHH
Q 008510          211 KLPYNRSDNPYDAA  224 (563)
Q Consensus       211 ~~~~n~~~~~w~~a  224 (563)
                      .+.+|+.+.+|++.
T Consensus       249 ~gs~dg~i~vw~~~  262 (311)
T KOG1446|consen  249 SGSDDGTIHVWNLE  262 (311)
T ss_pred             EecCCCcEEEEEcC
Confidence            99999999999984

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.65  E-value=2.3e-16  Score=161.66  Aligned_cols=196  Identities=19%  Similarity=0.307  Sum_probs=138.2

Q ss_pred             CCEEEEEECCCcEEEEcC---CCc----eeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CC--ceeEEEe-c
Q 008510            3 GVGIISASHDCTIRLWAL---TGQ----VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DG--VCVQSIE-H   69 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~---~g~----~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~--~~~~~l~-h   69 (563)
                      +++|+|||.||.||+|+.   .++    ++..++.|.++|.++....+| .++|||.|-+|++|+  .+  -|+.+++ |
T Consensus        37 ~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H  116 (735)
T KOG0308|consen   37 GRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTH  116 (735)
T ss_pred             CceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcc
Confidence            567999999999999998   232    578899999999999998888 899999999999999  33  6888888 9


Q ss_pred             CCcEEEEEE-ccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceeeecccCC
Q 008510           70 PGCVWDAKF-LENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNA  147 (563)
Q Consensus        70 ~~~V~~v~~-~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~d  147 (563)
                      .+.|.|+++ -++.. +|+||.|+.|.+||+.++..   ..+..+.....+...++.           ...++...-...
T Consensus       117 ~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~---~l~~s~n~~t~~sl~sG~-----------k~siYSLA~N~t  182 (735)
T KOG0308|consen  117 KDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTA---TLVASFNNVTVNSLGSGP-----------KDSIYSLAMNQT  182 (735)
T ss_pred             cchheeeeecccCceeEEecCCCccEEEEEccCcch---hhhhhccccccccCCCCC-----------ccceeeeecCCc
Confidence            999999999 66666 89999999999999998841   011112111111110000           011111112222


Q ss_pred             CeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHHHH
Q 008510          148 GQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAADK  226 (563)
Q Consensus       148 g~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~~  226 (563)
                      | +.++.++..+....||..++.               +..-+.||. |.|..+-+ .||..+++.+.|+++++|+..++
T Consensus       183 ~-t~ivsGgtek~lr~wDprt~~---------------kimkLrGHT-dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ  245 (735)
T KOG0308|consen  183 G-TIIVSGGTEKDLRLWDPRTCK---------------KIMKLRGHT-DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ  245 (735)
T ss_pred             c-eEEEecCcccceEEecccccc---------------ceeeeeccc-cceEEEEEcCCCCeEeecCCCceEEeeecccc
Confidence            3 344444444556677765542               223355777 77888888 89999999999999999999877


Q ss_pred             HHH
Q 008510          227 WLL  229 (563)
Q Consensus       227 f~~  229 (563)
                      -|.
T Consensus       246 rCl  248 (735)
T KOG0308|consen  246 RCL  248 (735)
T ss_pred             cee
Confidence            553

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.65  E-value=2.2e-15  Score=160.67  Aligned_cols=212  Identities=20%  Similarity=0.295  Sum_probs=156.4

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeEE-EecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLME-MVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA   76 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~~-l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v   76 (563)
                      ++++.+++.|.+|++|+. ++..+.. +.||.+.|+++++...+ .+++|+.|+++|+||  +|.|.+++. |+..|.++
T Consensus       218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~  297 (537)
T KOG0274|consen  218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCL  297 (537)
T ss_pred             cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEE
Confidence            568999999999999999 8888887 99999999999998644 999999999999999  999999999 99999999


Q ss_pred             EEccCCcEEEEeCCCcEEEEEcCCCceeceeeecccccccc------eeEEeeccCCceEEEeCCCCceeeec-ccCCCe
Q 008510           77 KFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELS------QYKLCRKKVGGLKLEDLPGLEALQIP-GTNAGQ  149 (563)
Q Consensus        77 ~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~------~~~~~~~~~~~i~~~d~~~~~~l~~~-g~~dg~  149 (563)
                      ...+. .+++|+.|.+|+||++.++....  .+.+|...|.      ...+++..++.|++||....+.+... ||..-.
T Consensus       298 ~~~~~-~~~sgs~D~tVkVW~v~n~~~l~--l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V  374 (537)
T KOG0274|consen  298 TIDPF-LLVSGSRDNTVKVWDVTNGACLN--LLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRV  374 (537)
T ss_pred             EccCc-eEeeccCCceEEEEeccCcceEE--EeccccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCcceE
Confidence            87543 37889999999999999887554  3333555544      45668889999999999988777655 776666


Q ss_pred             EEEEecC-CCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEcCCCCeeeeecCCCCCChhHHHHH
Q 008510          150 TKVVREG-DNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADK  226 (563)
Q Consensus       150 ~~l~~~~-~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~~dg~~~~~~~~n~~~~~w~~a~~  226 (563)
                      +.++..+ ........|...+.|+.....       .....+.||. ..|..+. ..++.+.+...|+++++|++.+.
T Consensus       375 ~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~-------~c~~tl~~h~-~~v~~l~-~~~~~Lvs~~aD~~Ik~WD~~~~  443 (537)
T KOG0274|consen  375 YSLIVDSENRLLSGSLDTTIKVWDLRTKR-------KCIHTLQGHT-SLVSSLL-LRDNFLVSSSADGTIKLWDAEEG  443 (537)
T ss_pred             EEEEecCcceEEeeeeccceEeecCCchh-------hhhhhhcCCc-ccccccc-cccceeEeccccccEEEeecccC
Confidence            6655554 322222333334444432110       1233455665 4443332 34566888888888889976544

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.65  E-value=1e-14  Score=134.81  Aligned_cols=214  Identities=19%  Similarity=0.302  Sum_probs=155.3

Q ss_pred             CCCCEEEEEECCCcEEEEcCC-Ccee--EEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCceeEEEecCCcE
Q 008510            1 MPGVGIISASHDCTIRLWALT-GQVL--MEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIEHPGCV   73 (563)
Q Consensus         1 ~~g~~l~s~s~DgtIrlWd~~-g~~i--~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~~~l~h~~~V   73 (563)
                      .+|..+++|+.|+++++|++. ++..  ..+.||++.|-.++|+|..  .+++++.|++||+||  +++|.+.+.....-
T Consensus        30 ~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~en  109 (313)
T KOG1407|consen   30 CDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGEN  109 (313)
T ss_pred             ccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcc
Confidence            378999999999999999993 3332  3467999999999999875  899999999999999  89999998876666


Q ss_pred             EEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccc-----cceeEEeeccCCceEEEeCCCCce--------
Q 008510           74 WDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASE-----LSQYKLCRKKVGGLKLEDLPGLEA--------  139 (563)
Q Consensus        74 ~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~i~~~d~~~~~~--------  139 (563)
                      -.+.|+|+|. ++.|..|..|.+.|.++.+....++...+.+.     ...+.+.....|+|.+...|.-+.        
T Consensus       110 i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~  189 (313)
T KOG1407|consen  110 INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHP  189 (313)
T ss_pred             eEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCC
Confidence            6789999998 99999999999999999886655554444333     234555666778999988875543        


Q ss_pred             ---eeecccCCCeEEEEecCCCeEEEEEecccceEEEeCc-----EeeCCCCCCCceeecCcccCcEEEEEc-CCCCeee
Q 008510          140 ---LQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGE-----VVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTR  210 (563)
Q Consensus       140 ---l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~-----v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~  210 (563)
                         +.+...++|.+..+++.| ..+.+||...-.+.+...     |..-+-+.+++.+-.|.+ |+.+++.. ++|..+.
T Consensus       190 snCicI~f~p~GryfA~GsAD-AlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSE-Dh~IDIA~vetGd~~~  267 (313)
T KOG1407|consen  190 SNCICIEFDPDGRYFATGSAD-ALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASE-DHFIDIAEVETGDRVW  267 (313)
T ss_pred             cceEEEEECCCCceEeecccc-ceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCc-cceEEeEecccCCeEE
Confidence               333466778877777766 667789987655443311     111111222455555666 66666666 7777766


Q ss_pred             eecCCC
Q 008510          211 KLPYNR  216 (563)
Q Consensus       211 ~~~~n~  216 (563)
                      ..+.+.
T Consensus       268 eI~~~~  273 (313)
T KOG1407|consen  268 EIPCEG  273 (313)
T ss_pred             EeeccC
Confidence            666555

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.65  E-value=5.1e-15  Score=156.62  Aligned_cols=162  Identities=17%  Similarity=0.273  Sum_probs=119.8

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc-CCceeEEEe-cCCcEEEEE
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK-DGVCVQSIE-HPGCVWDAK   77 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd-~~~~~~~l~-h~~~V~~v~   77 (563)
                      .++|+|+|.|.|||||++ ..+|+++|. |.++|+||+|+|-.  +|+|||-|+.||||+ ....+-... ...-|++++
T Consensus       380 n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvc  458 (712)
T KOG0283|consen  380 NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVC  458 (712)
T ss_pred             CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEE
Confidence            468999999999999999 788999885 99999999999954  999999999999999 444443444 557999999


Q ss_pred             EccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccc------ccc---------eeEEeeccCCceEEEeCCCCce--
Q 008510           78 FLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYAS------ELS---------QYKLCRKKVGGLKLEDLPGLEA--  139 (563)
Q Consensus        78 ~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~------~v~---------~~~~~~~~~~~i~~~d~~~~~~--  139 (563)
                      |.|+|. .+.|+.+|.+++|+.+.-+......+.....      .+.         ...+....|..|+++|++....  
T Consensus       459 y~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~  538 (712)
T KOG0283|consen  459 YSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVH  538 (712)
T ss_pred             eccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhh
Confidence            999999 8999999999999998776544333332211      111         1244556677888888843322  


Q ss_pred             -----------eeecccCCCeEEEEecCCCeEEEEEec
Q 008510          140 -----------LQIPGTNAGQTKVVREGDNGVAYSWDM  166 (563)
Q Consensus       140 -----------l~~~g~~dg~~~l~~~~~~~~~~~wd~  166 (563)
                                 +....+.||...+..+ ++..+|+|+.
T Consensus       539 KfKG~~n~~SQ~~Asfs~Dgk~IVs~s-eDs~VYiW~~  575 (712)
T KOG0283|consen  539 KFKGFRNTSSQISASFSSDGKHIVSAS-EDSWVYIWKN  575 (712)
T ss_pred             hhcccccCCcceeeeEccCCCEEEEee-cCceEEEEeC
Confidence                       2233455676666665 4466777774

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.64  E-value=4.7e-14  Score=138.49  Aligned_cols=202  Identities=27%  Similarity=0.479  Sum_probs=145.6

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEE
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAK   77 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~   77 (563)
                      ++.+++++.||.|++|++ +++.+..+.+|...|.+++|+|++ .+++++.|+.+++|+  +++....+. |...+.+++
T Consensus        63 ~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~  142 (289)
T cd00200          63 GTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVA  142 (289)
T ss_pred             CCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEE
Confidence            568999999999999999 668888999999999999999998 778888899999999  578888887 888999999


Q ss_pred             EccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCCceeeec-ccCC
Q 008510           78 FLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLEALQIP-GTNA  147 (563)
Q Consensus        78 ~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~~l~~~-g~~d  147 (563)
                      |+|++. +++++.|+.|++||+++++......  .+...+.        ...+.+..++.+.+||++....+... ++..
T Consensus       143 ~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~  220 (289)
T cd00200         143 FSPDGTFVASSSQDGTIKLWDLRTGKCVATLT--GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN  220 (289)
T ss_pred             EcCcCCEEEEEcCCCcEEEEEccccccceeEe--cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCC
Confidence            999988 5666669999999998776433222  2222222        24455556899999999865554433 3333


Q ss_pred             CeEEEEecCC---------CeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCC
Q 008510          148 GQTKVVREGD---------NGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRS  217 (563)
Q Consensus       148 g~~~l~~~~~---------~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~  217 (563)
                      ....+...++         ++.+++|+...+.               ....+.++. ..+.++.+ ++|..++....|+.
T Consensus       221 ~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~---------------~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d~~  284 (289)
T cd00200         221 GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE---------------CVQTLSGHT-NSVTSLAWSPDGKRLASGSADGT  284 (289)
T ss_pred             ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCce---------------eEEEccccC-CcEEEEEECCCCCEEEEecCCCe
Confidence            3333333332         2344455543321               112233443 56889999 88888999999998


Q ss_pred             CChhH
Q 008510          218 DNPYD  222 (563)
Q Consensus       218 ~~~w~  222 (563)
                      +.+|+
T Consensus       285 i~iw~  289 (289)
T cd00200         285 IRIWD  289 (289)
T ss_pred             EEecC
Confidence            88884

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.63  E-value=5.6e-15  Score=147.27  Aligned_cols=191  Identities=20%  Similarity=0.285  Sum_probs=133.3

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc-CCceeE-EEe-cCCcEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK-DGVCVQ-SIE-HPGCVWD   75 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd-~~~~~~-~l~-h~~~V~~   75 (563)
                      ||+.++.|...|.|+++|. +...++.+.+|+.+|..+.|+|.+  .+++|+.|+.+++|| +...++ .+. |++.|+|
T Consensus        79 DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~  158 (487)
T KOG0310|consen   79 DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRC  158 (487)
T ss_pred             CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEe
Confidence            7999999999999999998 555788999999999999999976  899999999999999 555554 555 9999999


Q ss_pred             EEEccCCc--EEEEeCCCcEEEEEcCCCceeceeeecccccccce-------eEEeeccCCceEEEeCCCC-ceeeecc-
Q 008510           76 AKFLENGD--IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQ-------YKLCRKKVGGLKLEDLPGL-EALQIPG-  144 (563)
Q Consensus        76 v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~-------~~~~~~~~~~i~~~d~~~~-~~l~~~g-  144 (563)
                      .+|+|-.+  ++|||.||+||+||+++.. ....++ .|...+..       ..+.......+++||+.++ ..+...+ 
T Consensus       159 g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~el-nhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~  236 (487)
T KOG0310|consen  159 GDISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVEL-NHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFN  236 (487)
T ss_pred             eccccCCCeEEEecCCCceEEEEEeccCC-ceeEEe-cCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhc
Confidence            99999655  8999999999999999874 111121 23333333       3334444568999999844 3433334 


Q ss_pred             cCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEcCCCCeeeeec
Q 008510          145 TNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLP  213 (563)
Q Consensus       145 ~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~~dg~~~~~~~  213 (563)
                      |..-.+.+.-..++                .++.+++-++ ..+.|+-..|.-|++|.++.+  ++++.
T Consensus       237 H~KtVTcL~l~s~~----------------~rLlS~sLD~-~VKVfd~t~~Kvv~s~~~~~p--vLsia  286 (487)
T KOG0310|consen  237 HNKTVTCLRLASDS----------------TRLLSGSLDR-HVKVFDTTNYKVVHSWKYPGP--VLSIA  286 (487)
T ss_pred             ccceEEEEEeecCC----------------ceEeeccccc-ceEEEEccceEEEEeeecccc--eeeEE
Confidence            33333333333321                1223332222 556677666777889998765  44443

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.62  E-value=2.5e-14  Score=131.39  Aligned_cols=166  Identities=17%  Similarity=0.324  Sum_probs=122.2

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cC-CcEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HP-GCVWD   75 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~-~~V~~   75 (563)
                      +|+.++|||.||++||||+ .-.|-+. ..|.++|.+|..+|+. .+++|..+|.|||||  ...|.+.+- .. ..|.+
T Consensus        94 dgrWMyTgseDgt~kIWdlR~~~~qR~-~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~s  172 (311)
T KOG0315|consen   94 DGRWMYTGSEDGTVKIWDLRSLSCQRN-YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQS  172 (311)
T ss_pred             cCeEEEecCCCceEEEEeccCcccchh-ccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceee
Confidence            6899999999999999999 5455444 4588999999999987 999999999999999  555665554 33 38999


Q ss_pred             EEEccCCc-EEEEeCCCcEEEEEcCCCceec----eeeecccccccc--------eeEEeeccCCceEEEeCCCCcee--
Q 008510           76 AKFLENGD-IVTACSDGVTRIWTVHSDKVAD----SLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLEAL--  140 (563)
Q Consensus        76 v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~----~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~~l--  140 (563)
                      ++..|+|. ++.+-.-|..++|++-.+....    ...++++...+-        .+..+.+.+.++++|...+.-.+  
T Consensus       173 l~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~  252 (311)
T KOG0315|consen  173 LTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLEL  252 (311)
T ss_pred             EEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEE
Confidence            99999999 7777888999999997754322    222333433322        34455677788888888765111  


Q ss_pred             e----------ecccCCCeEEEEecCCCeEEEEEecccc
Q 008510          141 Q----------IPGTNAGQTKVVREGDNGVAYSWDMKEQ  169 (563)
Q Consensus       141 ~----------~~g~~dg~~~l~~~~~~~~~~~wd~~~~  169 (563)
                      .          ..++.||++.+..++| ..+..|+...+
T Consensus       253 ~l~gh~rWvWdc~FS~dg~YlvTassd-~~~rlW~~~~~  290 (311)
T KOG0315|consen  253 VLTGHQRWVWDCAFSADGEYLVTASSD-HTARLWDLSAG  290 (311)
T ss_pred             EeecCCceEEeeeeccCccEEEecCCC-CceeecccccC
Confidence            1          1245678877777666 67778887654

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.62  E-value=5.3e-15  Score=146.36  Aligned_cols=193  Identities=20%  Similarity=0.271  Sum_probs=134.7

Q ss_pred             CEEEEEECCCcEEEEcCC--C------ceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc-C--C-ceeEEEe-
Q 008510            4 VGIISASHDCTIRLWALT--G------QVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK-D--G-VCVQSIE-   68 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~~--g------~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd-~--~-~~~~~l~-   68 (563)
                      ..+++|+.|++|++||++  +      .+...+.+|++.|..|+|++..  .|+++++|+.+.||| .  . ++..... 
T Consensus       191 g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~a  270 (422)
T KOG0264|consen  191 GTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKA  270 (422)
T ss_pred             eeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccc
Confidence            468999999999999992  2      2456789999999999999965  899999999999999 3  2 2333344 


Q ss_pred             cCCcEEEEEEccCCc--EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceeeecccC
Q 008510           69 HPGCVWDAKFLENGD--IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTN  146 (563)
Q Consensus        69 h~~~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~  146 (563)
                      |++.|+|++|+|-+.  |||||.|++|++||+|.-+. +...+.+|.                       .+++++..++
T Consensus       271 h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~-~lh~~e~H~-----------------------dev~~V~WSP  326 (422)
T KOG0264|consen  271 HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK-PLHTFEGHE-----------------------DEVFQVEWSP  326 (422)
T ss_pred             cCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc-CceeccCCC-----------------------cceEEEEeCC
Confidence            999999999999665  89999999999999998762 222333333                       3444455555


Q ss_pred             CCeEEEEecCCCeEEEEEecccceEEEeCcEee--CCCCCC-C-ceeecCcccCcEEEEEc--CCCCeeeeecCCCCCCh
Q 008510          147 AGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVD--GPDDGM-N-RPILDGIQYDYVFDVDI--GDGEPTRKLPYNRSDNP  220 (563)
Q Consensus       147 dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~--~~~~~~-~-~~~~~g~~~d~v~~vd~--~dg~~~~~~~~n~~~~~  220 (563)
                      .....+..++.+....+||...     +|+-..  .+.++. . ...+-||. ..|.++++  .+.-.+.+.+-|....+
T Consensus       327 h~etvLASSg~D~rl~vWDls~-----ig~eq~~eda~dgppEllF~HgGH~-~kV~DfsWnp~ePW~I~SvaeDN~LqI  400 (422)
T KOG0264|consen  327 HNETVLASSGTDRRLNVWDLSR-----IGEEQSPEDAEDGPPELLFIHGGHT-AKVSDFSWNPNEPWTIASVAEDNILQI  400 (422)
T ss_pred             CCCceeEecccCCcEEEEeccc-----cccccChhhhccCCcceeEEecCcc-cccccccCCCCCCeEEEEecCCceEEE
Confidence            5555566666666666777521     121111  011111 2 24455665 77888888  34445888999999999


Q ss_pred             hHHHHH
Q 008510          221 YDAADK  226 (563)
Q Consensus       221 w~~a~~  226 (563)
                      |..++.
T Consensus       401 W~~s~~  406 (422)
T KOG0264|consen  401 WQMAEN  406 (422)
T ss_pred             eecccc
Confidence            998754

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.62  E-value=6e-15  Score=143.32  Aligned_cols=160  Identities=24%  Similarity=0.396  Sum_probs=120.5

Q ss_pred             CCCEEEEEECCCcEEEEcC-C-C------ceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCceeEEEec
Q 008510            2 PGVGIISASHDCTIRLWAL-T-G------QVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIEH   69 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~-g------~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~~~l~h   69 (563)
                      ++..|||||.|.+|+||.+ + |      +++..+.||+..|--|.|+|.-  .++|+|.|.+|.+|+  +++.+-++.|
T Consensus        93 nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~h  172 (472)
T KOG0303|consen   93 NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDH  172 (472)
T ss_pred             CCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCC
Confidence            4678999999999999998 3 2      5688999999999999999975  799999999999999  8888888889


Q ss_pred             CCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc------------eeEEeeccCCceEEEeCCC
Q 008510           70 PGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS------------QYKLCRKKVGGLKLEDLPG  136 (563)
Q Consensus        70 ~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~------------~~~~~~~~~~~i~~~d~~~  136 (563)
                      ++-|++++|+.||. +++.|.|..|||||.++++.....  .+|++.-.            .--++..++..+-+||-..
T Consensus       173 pd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~--~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~n  250 (472)
T KOG0303|consen  173 PDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG--VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNN  250 (472)
T ss_pred             CCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec--ccccCCCcceeEEeccCceeeeccccccccceeccCccc
Confidence            99999999999998 999999999999999999865433  34443311            1112334556777887542


Q ss_pred             Cc---eeeecccCCCeEEEEecCCCeEEEE
Q 008510          137 LE---ALQIPGTNAGQTKVVREGDNGVAYS  163 (563)
Q Consensus       137 ~~---~l~~~g~~dg~~~l~~~~~~~~~~~  163 (563)
                      .+   .+...-++.|...-+...|..++|+
T Consensus       251 l~eP~~~~elDtSnGvl~PFyD~dt~ivYl  280 (472)
T KOG0303|consen  251 LEEPIALQELDTSNGVLLPFYDPDTSIVYL  280 (472)
T ss_pred             ccCcceeEEeccCCceEEeeecCCCCEEEE
Confidence            22   2222244455555555555455443

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.61  E-value=8.2e-15  Score=146.61  Aligned_cols=109  Identities=26%  Similarity=0.347  Sum_probs=83.1

Q ss_pred             ecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc---CCceeEEEec------CCcEEEEEEccCCc-EEEEeCCCcEEEE
Q 008510           29 VGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK---DGVCVQSIEH------PGCVWDAKFLENGD-IVTACSDGVTRIW   96 (563)
Q Consensus        29 ~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd---~~~~~~~l~h------~~~V~~v~~~p~g~-i~sgs~Dg~Irvw   96 (563)
                      +||...++|.+|+|..  .|+|||.||++|||+   ..+.++.|.+      .-.+.+++|+|+|. ||+||.||.|.+|
T Consensus       265 KGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W  344 (641)
T KOG0772|consen  265 KGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIW  344 (641)
T ss_pred             CCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeee
Confidence            6999999999999986  899999999999999   4566677762      12689999999999 9999999999999


Q ss_pred             EcCCCceeceeee-ccccc--ccce--------eEEeeccCCceEEEeCCCC
Q 008510           97 TVHSDKVADSLEL-EAYAS--ELSQ--------YKLCRKKVGGLKLEDLPGL  137 (563)
Q Consensus        97 d~~~~~~~~~~~~-~~~~~--~v~~--------~~~~~~~~~~i~~~d~~~~  137 (563)
                      +.++....+...+ .+|..  .+.+        +.++.+.|+.+++||++..
T Consensus       345 ~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~  396 (641)
T KOG0772|consen  345 DKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF  396 (641)
T ss_pred             ecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccc
Confidence            9865543322222 23333  2333        3345677899999999754

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.61  E-value=1e-14  Score=145.24  Aligned_cols=203  Identities=20%  Similarity=0.328  Sum_probs=145.7

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWD   75 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~   75 (563)
                      +|..|+|+|.|++||+||+ +|+++..+.. ...++|+.|+|++  .|++|+.|+.|+.||  +++.+|.+. |-+.|..
T Consensus       269 ~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~  347 (503)
T KOG0282|consen  269 CGTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILD  347 (503)
T ss_pred             cCCeeeeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheee
Confidence            4789999999999999999 9999988742 3456999999997  799999999999999  888888888 7789999


Q ss_pred             EEEccCCc-EEEEeCCCcEEEEEcCCCceecee------eecccccccceeEE-eeccCCceEEEeCCCC----------
Q 008510           76 AKFLENGD-IVTACSDGVTRIWTVHSDKVADSL------ELEAYASELSQYKL-CRKKVGGLKLEDLPGL----------  137 (563)
Q Consensus        76 v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~------~~~~~~~~v~~~~~-~~~~~~~i~~~d~~~~----------  137 (563)
                      +.|.++|+ +++.+.|+++|||+.+.+-.....      ......-....-.+ +..-++.|-++.....          
T Consensus       348 i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~fe  427 (503)
T KOG0282|consen  348 ITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFE  427 (503)
T ss_pred             eEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhc
Confidence            99999998 999999999999999876532211      11111112222222 3334455555554211          


Q ss_pred             --c----eeeecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEcC--CCCee
Q 008510          138 --E----ALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDIG--DGEPT  209 (563)
Q Consensus       138 --~----~l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~~--dg~~~  209 (563)
                        .    ...+-+++||.+.+.++++ +.++.||-.+-.      +         ...+++|. .-+..+++.  ....+
T Consensus       428 Gh~vaGys~~v~fSpDG~~l~SGdsd-G~v~~wdwkt~k------l---------~~~lkah~-~~ci~v~wHP~e~Skv  490 (503)
T KOG0282|consen  428 GHSVAGYSCQVDFSPDGRTLCSGDSD-GKVNFWDWKTTK------L---------VSKLKAHD-QPCIGVDWHPVEPSKV  490 (503)
T ss_pred             ceeccCceeeEEEcCCCCeEEeecCC-ccEEEeechhhh------h---------hhccccCC-cceEEEEecCCCccee
Confidence              1    1233478999988888777 667788854421      1         11133332 557888883  44558


Q ss_pred             eeecCCCCCChhH
Q 008510          210 RKLPYNRSDNPYD  222 (563)
Q Consensus       210 ~~~~~n~~~~~w~  222 (563)
                      ++.++|+.+++|+
T Consensus       491 at~~w~G~Ikiwd  503 (503)
T KOG0282|consen  491 ATCGWDGLIKIWD  503 (503)
T ss_pred             EecccCceeEecC
Confidence            9999999999985

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.61  E-value=5.8e-14  Score=132.36  Aligned_cols=135  Identities=21%  Similarity=0.346  Sum_probs=105.9

Q ss_pred             CCEEEEEECCCcEEEEcC--CCcee-EEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEE
Q 008510            3 GVGIISASHDCTIRLWAL--TGQVL-MEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDA   76 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~--~g~~i-~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v   76 (563)
                      +..++.+|+||+||+|++  +|..+ +....|.++|.+++|+.|| .+++|+.|+.+++||  +++..+.-.|.+.|.++
T Consensus        40 ~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~  119 (347)
T KOG0647|consen   40 DNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTC  119 (347)
T ss_pred             CceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEE
Confidence            456789999999999999  45544 3456799999999999999 999999999999999  66544444499999999


Q ss_pred             EEccCCc---EEEEeCCCcEEEEEcCCCceeceeeecccc---cccceeEEeeccCCceEEEeCCCC
Q 008510           77 KFLENGD---IVTACSDGVTRIWTVHSDKVADSLELEAYA---SELSQYKLCRKKVGGLKLEDLPGL  137 (563)
Q Consensus        77 ~~~p~g~---i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~i~~~d~~~~  137 (563)
                      .|-+...   ++|||.|.+||.||.|+........+..-.   +....+...+..+..|.++.+..+
T Consensus       120 ~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~  186 (347)
T KOG0647|consen  120 HWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENP  186 (347)
T ss_pred             EEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCC
Confidence            9987554   899999999999999988755544443221   123355666777889999999544

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.60  E-value=9.7e-15  Score=149.84  Aligned_cols=159  Identities=21%  Similarity=0.326  Sum_probs=126.2

Q ss_pred             CCCEEEEEECCCcEEEEcC-CC--ceeEEEecCCCcEEEEEE-cCCC-eEEEEeCCCcEEEEc--CC--ceeEE------
Q 008510            2 PGVGIISASHDCTIRLWAL-TG--QVLMEMVGHTAIVYSIDS-HASG-LIVSGSEDRFAKIWK--DG--VCVQS------   66 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g--~~i~~l~gH~~~V~~v~~-~p~g-~l~s~s~D~tvriWd--~~--~~~~~------   66 (563)
                      +|+.|+|||.|.||++|+. .+  -|..++..|.++|.|+++ -++. .+||||-|+.|.+||  ++  +.+.+      
T Consensus        84 ~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~  163 (735)
T KOG0308|consen   84 NGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTV  163 (735)
T ss_pred             CCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence            4678999999999999999 44  688999999999999999 6666 899999999999999  44  22222      


Q ss_pred             --Ee--cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEe
Q 008510           67 --IE--HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLED  133 (563)
Q Consensus        67 --l~--h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d  133 (563)
                        +.  +..+|++++.+++|. |++|+..+.+|+||.++.+..  ..+++|.+.|.        ...+++++||.|++||
T Consensus       164 ~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~ki--mkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWd  241 (735)
T KOG0308|consen  164 NSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKI--MKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWD  241 (735)
T ss_pred             ccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccce--eeeeccccceEEEEEcCCCCeEeecCCCceEEeee
Confidence              22  556899999999998 899999999999999998733  34556666554        4566788999999999


Q ss_pred             CCCCceeeec-ccCCCeEEEEecCCCeEEE
Q 008510          134 LPGLEALQIP-GTNAGQTKVVREGDNGVAY  162 (563)
Q Consensus       134 ~~~~~~l~~~-g~~dg~~~l~~~~~~~~~~  162 (563)
                      +..+..+... .|++|...+..+.+-..+|
T Consensus       242 LgqQrCl~T~~vH~e~VWaL~~~~sf~~vY  271 (735)
T KOG0308|consen  242 LGQQRCLATYIVHKEGVWALQSSPSFTHVY  271 (735)
T ss_pred             ccccceeeeEEeccCceEEEeeCCCcceEE
Confidence            9988887765 7888877666665433333

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.60  E-value=1.6e-13  Score=134.62  Aligned_cols=204  Identities=25%  Similarity=0.417  Sum_probs=145.3

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA   76 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v   76 (563)
                      +++++++++.||.|++|+. +++....+.+|...+.++.|+|++ .+++++.|+.+++|+  .++.+..+. |...+.++
T Consensus        20 ~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~   99 (289)
T cd00200          20 DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSV   99 (289)
T ss_pred             CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEE
Confidence            3688999999999999999 777888899999999999999998 999999999999999  556677776 77799999


Q ss_pred             EEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccccc--------ceeEEeeccCCceEEEeCCCCceeeec----
Q 008510           77 KFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL--------SQYKLCRKKVGGLKLEDLPGLEALQIP----  143 (563)
Q Consensus        77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v--------~~~~~~~~~~~~i~~~d~~~~~~l~~~----  143 (563)
                      .|+|++. +++++.||.|++||+++++....  +..+...+        ....+.+..++.+.+||++..+.+...    
T Consensus       100 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~  177 (289)
T cd00200         100 AFSPDGRILSSSSRDKTIKVWDVETGKCLTT--LRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHT  177 (289)
T ss_pred             EEcCCCCEEEEecCCCeEEEEECCCcEEEEE--eccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCc
Confidence            9999988 56666699999999997664322  22222222        233444455899999999755433221    


Q ss_pred             -------ccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCC
Q 008510          144 -------GTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYN  215 (563)
Q Consensus       144 -------g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n  215 (563)
                             .++++...++.+. ++.+++|+...+..               ...+.++. +.+..+.+ +++..+.....|
T Consensus       178 ~~i~~~~~~~~~~~l~~~~~-~~~i~i~d~~~~~~---------------~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~  240 (289)
T cd00200         178 GEVNSVAFSPDGEKLLSSSS-DGTIKLWDLSTGKC---------------LGTLRGHE-NGVNSVAFSPDGYLLASGSED  240 (289)
T ss_pred             cccceEEECCCcCEEEEecC-CCcEEEEECCCCce---------------ecchhhcC-CceEEEEEcCCCcEEEEEcCC
Confidence                   3344434444433 35556777644211               11122333 46888888 677777777778


Q ss_pred             CCCChhHHH
Q 008510          216 RSDNPYDAA  224 (563)
Q Consensus       216 ~~~~~w~~a  224 (563)
                      +.+.+|+..
T Consensus       241 ~~i~i~~~~  249 (289)
T cd00200         241 GTIRVWDLR  249 (289)
T ss_pred             CcEEEEEcC
Confidence            999999875

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.59  E-value=1.8e-14  Score=138.71  Aligned_cols=202  Identities=17%  Similarity=0.225  Sum_probs=137.6

Q ss_pred             EEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc-CCceeE-----------------
Q 008510            5 GIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK-DGVCVQ-----------------   65 (563)
Q Consensus         5 ~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd-~~~~~~-----------------   65 (563)
                      .++|||.||.|++||+ +..|+++++.|.+.|..+++.. +.++++|.|++||.|. .+..++                 
T Consensus        81 ~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~  159 (433)
T KOG0268|consen   81 TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKN  159 (433)
T ss_pred             hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc-cceEEecCCcceeeeeccCCcceeeecccccccccccccc
Confidence            5899999999999999 7889999999999999999986 4789999999999997 333222                 


Q ss_pred             ----------------------EEe-cCCcEEEEEEccCCc--EEEEeCCCcEEEEEcCCCceeceeeeccccccc----
Q 008510           66 ----------------------SIE-HPGCVWDAKFLENGD--IVTACSDGVTRIWTVHSDKVADSLELEAYASEL----  116 (563)
Q Consensus        66 ----------------------~l~-h~~~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v----  116 (563)
                                            ++. ..+.|.++.|+|.-.  |++|++|+.|.+||++++.......+..-.+.+    
T Consensus       160 ~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP  239 (433)
T KOG0268|consen  160 SVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNP  239 (433)
T ss_pred             ccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCc
Confidence                                  222 233588899999655  788889999999999998865544443222221    


Q ss_pred             cee-EEeeccCCceEEEeCCCCc------------eeeecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCC
Q 008510          117 SQY-KLCRKKVGGLKLEDLPGLE------------ALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDD  183 (563)
Q Consensus       117 ~~~-~~~~~~~~~i~~~d~~~~~------------~l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~  183 (563)
                      ..+ ..++.+|.++-.+|++..+            ++.+-.++.|+-.+..+-| ..+.++....+              
T Consensus       240 eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyD-ksIRIf~~~~~--------------  304 (433)
T KOG0268|consen  240 EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYD-KSIRIFPVNHG--------------  304 (433)
T ss_pred             cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcccccc-ceEEEeecCCC--------------
Confidence            223 3356677788888876332            1222233333333222222 11122221111              


Q ss_pred             CCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHH
Q 008510          184 GMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDA  223 (563)
Q Consensus       184 ~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~  223 (563)
                       ...-+|--+....||+|.+ .|.+.+.+++.|++++.|.+
T Consensus       305 -~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka  344 (433)
T KOG0268|consen  305 -HSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA  344 (433)
T ss_pred             -cchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence             1223344455577999999 89999999999999999987

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.57  E-value=7.3e-14  Score=145.52  Aligned_cols=204  Identities=16%  Similarity=0.240  Sum_probs=151.8

Q ss_pred             CEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-----C--Cce--------eEE
Q 008510            4 VGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-----D--GVC--------VQS   66 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-----~--~~~--------~~~   66 (563)
                      +++++|...|.+-++|+ +...+.+...|.+.|++++.+||+ .+++||.|.+|++||     +  +..        .++
T Consensus       425 ~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rt  504 (888)
T KOG0306|consen  425 RYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRT  504 (888)
T ss_pred             ceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceE
Confidence            56677777777777777 666666778999999999999999 899999999999999     2  211        134


Q ss_pred             EecCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCC
Q 008510           67 IEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGL  137 (563)
Q Consensus        67 l~h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~  137 (563)
                      +..+..|.|++++|||+ ++.+-.|++|+||-+++-+..  ..+.+|.-+|.        ...++++.|.++++|-+.-+
T Consensus       505 Lel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFf--lsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG  582 (888)
T KOG0306|consen  505 LELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFF--LSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG  582 (888)
T ss_pred             EeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeee--eeecccccceeEEeccCCcCeEEeccCCCceEEeccccc
Confidence            45677899999999999 889999999999999987632  24444444433        45567888999999999766


Q ss_pred             ceeeec-ccCCCeE---------EEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCC
Q 008510          138 EALQIP-GTNAGQT---------KVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDG  206 (563)
Q Consensus       138 ~~l~~~-g~~dg~~---------~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg  206 (563)
                      ..-... +|.|...         .++.++.+..+.+||....  +             ..+.+.||. .-|++..+ ++|
T Consensus       583 DCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kF--e-------------~iq~L~~H~-~ev~cLav~~~G  646 (888)
T KOG0306|consen  583 DCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKF--E-------------EIQKLDGHH-SEVWCLAVSPNG  646 (888)
T ss_pred             hhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhh--h-------------hheeeccch-heeeeeEEcCCC
Confidence            554443 4445432         3444455566677775332  1             234477777 55899888 999


Q ss_pred             CeeeeecCCCCCChhHHHH
Q 008510          207 EPTRKLPYNRSDNPYDAAD  225 (563)
Q Consensus       207 ~~~~~~~~n~~~~~w~~a~  225 (563)
                      ..+.+.+.|.+++.|.--+
T Consensus       647 ~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  647 SFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             CeEEeccCCceeEeeeccC
Confidence            9999999999999998654

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.56  E-value=3.1e-15  Score=146.08  Aligned_cols=213  Identities=14%  Similarity=0.191  Sum_probs=154.1

Q ss_pred             CEEEEEECCCcEEEEcC-CC--ceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510            4 VGIISASHDCTIRLWAL-TG--QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA   76 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~-~g--~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v   76 (563)
                      +.|++|+.|..|++|++ .+  +.+.++.|..+.|.+++|.+++ .+++++.|+++++|+  +.+...++. |++.|.++
T Consensus       188 dtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~a  267 (459)
T KOG0288|consen  188 DTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAA  267 (459)
T ss_pred             chhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeee
Confidence            68999999999999999 33  3788999999999999999999 899999999999999  778888998 99999999


Q ss_pred             EEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccccc---ceeEEeeccCCceEEEeCCCCceeeec---------
Q 008510           77 KFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL---SQYKLCRKKVGGLKLEDLPGLEALQIP---------  143 (563)
Q Consensus        77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v---~~~~~~~~~~~~i~~~d~~~~~~l~~~---------  143 (563)
                      .|..... +++|+.|.+|+.||+....+..........+.+   ....+++..+++|++||.++.......         
T Consensus       268 k~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl  347 (459)
T KOG0288|consen  268 KFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSL  347 (459)
T ss_pred             hhhccccceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeEeecCcceeeE
Confidence            9987655 999999999999999998765443322222222   245567888999999998766544332         


Q ss_pred             -ccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChh
Q 008510          144 -GTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPY  221 (563)
Q Consensus       144 -g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w  221 (563)
                       -+.+|.-.+.++.++.+ -..|..+..-.  . ...      ......|+  | +..+-| |+|.+++.++.|+.+.+|
T Consensus       348 ~ls~~g~~lLsssRDdtl-~viDlRt~eI~--~-~~s------A~g~k~as--D-wtrvvfSpd~~YvaAGS~dgsv~iW  414 (459)
T KOG0288|consen  348 DLSMDGLELLSSSRDDTL-KVIDLRTKEIR--Q-TFS------AEGFKCAS--D-WTRVVFSPDGSYVAAGSADGSVYIW  414 (459)
T ss_pred             eeccCCeEEeeecCCCce-eeeecccccEE--E-Eee------cccccccc--c-cceeEECCCCceeeeccCCCcEEEE
Confidence             23444444444444332 23343322111  0 111      11123333  3 456667 999999999999999999


Q ss_pred             HHHHHHHH
Q 008510          222 DAADKWLL  229 (563)
Q Consensus       222 ~~a~~f~~  229 (563)
                      ++....|+
T Consensus       415 ~v~tgKlE  422 (459)
T KOG0288|consen  415 SVFTGKLE  422 (459)
T ss_pred             EccCceEE
Confidence            99755443

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.56  E-value=1.2e-13  Score=135.87  Aligned_cols=154  Identities=25%  Similarity=0.397  Sum_probs=118.4

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecC--CCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGH--TAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVW   74 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH--~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~   74 (563)
                      .|+||+++|+|++.-..|. +|.++......  .-.+.+..|+||| .|++|..|+.|+|||  ++..+..|. |.+.|.
T Consensus       314 tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk  393 (506)
T KOG0289|consen  314 TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVK  393 (506)
T ss_pred             CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCcee
Confidence            5899999999999999999 88877655432  2347899999999 999999999999999  566666677 999999


Q ss_pred             EEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceeeecccCCCeEEEE
Q 008510           75 DAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVV  153 (563)
Q Consensus        75 ~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg~~~l~  153 (563)
                      .++|+.||. +++++.|+.|++||+|..+......+..+.                        ++.....-..|.+...
T Consensus       394 ~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~------------------------~v~s~~fD~SGt~L~~  449 (506)
T KOG0289|consen  394 AISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK------------------------EVNSLSFDQSGTYLGI  449 (506)
T ss_pred             EEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc------------------------cceeEEEcCCCCeEEe
Confidence            999999999 999999999999999987733333332211                        1112223345666666


Q ss_pred             ecCCCeEEEEEecccceEEEeCcEeeC
Q 008510          154 REGDNGVAYSWDMKEQKWDKLGEVVDG  180 (563)
Q Consensus       154 ~~~~~~~~~~wd~~~~~w~~~g~v~~~  180 (563)
                      . +.+..+|++...+..|..+.....+
T Consensus       450 ~-g~~l~Vy~~~k~~k~W~~~~~~~~~  475 (506)
T KOG0289|consen  450 A-GSDLQVYICKKKTKSWTEIKELADH  475 (506)
T ss_pred             e-cceeEEEEEecccccceeeehhhhc
Confidence            6 4457789999999999988655554

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.56  E-value=5.6e-15  Score=153.18  Aligned_cols=157  Identities=20%  Similarity=0.349  Sum_probs=124.7

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEE
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAK   77 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~   77 (563)
                      ...++.|++||+||+||+ .++.++++.||...+.+|.|+|-+ ++++|+.|...++||  ...|.+++. |+..|.++.
T Consensus        82 E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~  161 (825)
T KOG0267|consen   82 ERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLR  161 (825)
T ss_pred             hhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEe
Confidence            356889999999999999 899999999999999999999999 889999999999999  578999998 999999999


Q ss_pred             EccCCc-EEEEeCCCcEEEEEcCCCceeceee-----ecccccccce-eEEeeccCCceEEEeCCCCceeeec-ccCCCe
Q 008510           78 FLENGD-IVTACSDGVTRIWTVHSDKVADSLE-----LEAYASELSQ-YKLCRKKVGGLKLEDLPGLEALQIP-GTNAGQ  149 (563)
Q Consensus        78 ~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~-----~~~~~~~v~~-~~~~~~~~~~i~~~d~~~~~~l~~~-g~~dg~  149 (563)
                      |+|+|+ +++|+.|.+++|||...|+....+.     ....+.+... ....++.++.+++||+.+.+++... ...+|.
T Consensus       162 lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v  241 (825)
T KOG0267|consen  162 LSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGV  241 (825)
T ss_pred             ecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCc
Confidence            999999 8999999999999999888553322     1111122222 3335778899999999987776554 334555


Q ss_pred             EEEEecCCCe
Q 008510          150 TKVVREGDNG  159 (563)
Q Consensus       150 ~~l~~~~~~~  159 (563)
                      ....+..++.
T Consensus       242 ~~~~fn~~~~  251 (825)
T KOG0267|consen  242 RSLAFNPDGK  251 (825)
T ss_pred             eeeeecCCce
Confidence            5555554433

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.55  E-value=5.3e-14  Score=133.09  Aligned_cols=153  Identities=21%  Similarity=0.387  Sum_probs=120.9

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc---CCceeEEEe-cCCcEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK---DGVCVQSIE-HPGCVWD   75 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd---~~~~~~~l~-h~~~V~~   75 (563)
                      .|+.++++|+|.|..+||+ +|+++..+.||......++-+|.. .++++|.|.+.|+||   .-..+..|+ |+..|.+
T Consensus       283 gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS  362 (481)
T KOG0300|consen  283 GGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTS  362 (481)
T ss_pred             CcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeE
Confidence            3678999999999999999 899999999999999999999988 899999999999999   334556677 9999999


Q ss_pred             EEEccCCcEEEEeCCCcEEEEEcCCCceeceeeecccc--c----ccce-eEEeeccCCceEEEeCCCCceeeec-ccCC
Q 008510           76 AKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYA--S----ELSQ-YKLCRKKVGGLKLEDLPGLEALQIP-GTNA  147 (563)
Q Consensus        76 v~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~--~----~v~~-~~~~~~~~~~i~~~d~~~~~~l~~~-g~~d  147 (563)
                      +.|..+.++++|+.|.+|+|||++..+- +...+..-.  +    .... .+.....+..++++|+.+...-..+ .+..
T Consensus       363 ~vF~~dd~vVSgSDDrTvKvWdLrNMRs-plATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRq  441 (481)
T KOG0300|consen  363 VVFNTDDRVVSGSDDRTVKVWDLRNMRS-PLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQ  441 (481)
T ss_pred             EEEecCCceeecCCCceEEEeeeccccC-cceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCccccc
Confidence            9999988899999999999999998762 222222111  1    1112 2333455679999999998887776 5666


Q ss_pred             CeEEEEec
Q 008510          148 GQTKVVRE  155 (563)
Q Consensus       148 g~~~l~~~  155 (563)
                      |..+|+.+
T Consensus       442 gHrRMV~c  449 (481)
T KOG0300|consen  442 GHRRMVTC  449 (481)
T ss_pred             ccceeeee
Confidence            77776543

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=1.3e-13  Score=142.30  Aligned_cols=205  Identities=17%  Similarity=0.212  Sum_probs=151.1

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEec-CCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CC-ceeEEEe-cCCcEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVG-HTAIVYSIDSHASGLIVSGSEDRFAKIWK--DG-VCVQSIE-HPGCVWD   75 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~g-H~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~-~~~~~l~-h~~~V~~   75 (563)
                      +|++|+.|-.+|+|.|||. +.+.+.++.+ |...|-+++|... .+.+|+.|+.|.++|  .. ....++. |...|..
T Consensus       228 ~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~-~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCg  306 (484)
T KOG0305|consen  228 DGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSS-VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCG  306 (484)
T ss_pred             CCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCc-eEEEecCCCcEEEEEEecchhhhhhhhcccceeee
Confidence            5899999999999999999 7888899999 9999999999833 899999999999999  33 3334465 8889999


Q ss_pred             EEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEe-----------eccCCceEEEeCCCCceeeec
Q 008510           76 AKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLC-----------RKKVGGLKLEDLPGLEALQIP  143 (563)
Q Consensus        76 v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~-----------~~~~~~i~~~d~~~~~~l~~~  143 (563)
                      ++|++++. +|+|+.|+.+.|||.....  +...+..|...|..+.++           +..|++|++|+..++..+...
T Consensus       307 Lkws~d~~~lASGgnDN~~~Iwd~~~~~--p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v  384 (484)
T KOG0305|consen  307 LKWSPDGNQLASGGNDNVVFIWDGLSPE--PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV  384 (484)
T ss_pred             eEECCCCCeeccCCCccceEeccCCCcc--ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc
Confidence            99999999 9999999999999995544  333455555555544332           345789999999877666554


Q ss_pred             ccCCCeEEEEecCCC-----------eEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeee
Q 008510          144 GTNAGQTKVVREGDN-----------GVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRK  211 (563)
Q Consensus       144 g~~dg~~~l~~~~~~-----------~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~  211 (563)
                      .+.....-+.+....           ..+.+|+..+.               .....+.||. ..|....+ |||..+.+
T Consensus       385 dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~---------------~~~~~l~gH~-~RVl~la~SPdg~~i~t  448 (484)
T KOG0305|consen  385 DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM---------------KLVAELLGHT-SRVLYLALSPDGETIVT  448 (484)
T ss_pred             ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc---------------ceeeeecCCc-ceeEEEEECCCCCEEEE
Confidence            332333333333222           12233332221               1233467787 56888888 99999999


Q ss_pred             ecCCCCCChhHHHH
Q 008510          212 LPYNRSDNPYDAAD  225 (563)
Q Consensus       212 ~~~n~~~~~w~~a~  225 (563)
                      +.-|.+.+.|++-.
T Consensus       449 ~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  449 GAADETLRFWNLFD  462 (484)
T ss_pred             ecccCcEEeccccC
Confidence            99999999999843

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.55  E-value=1.7e-13  Score=129.82  Aligned_cols=78  Identities=18%  Similarity=0.323  Sum_probs=69.9

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEEE
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKF   78 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~~   78 (563)
                      |.++|+|..||.|-+||+ +...-+++.+|..+|.|++|+++| .++|+|.|-.|++||  .|.+++.+..+..||.+.|
T Consensus        35 G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~  114 (405)
T KOG1273|consen   35 GDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQW  114 (405)
T ss_pred             cceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeee
Confidence            789999999999999999 777888899999999999999999 999999999999999  8888888876666666665


Q ss_pred             cc
Q 008510           79 LE   80 (563)
Q Consensus        79 ~p   80 (563)
                      +|
T Consensus       115 hp  116 (405)
T KOG1273|consen  115 HP  116 (405)
T ss_pred             cc
Confidence            55

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.55  E-value=7.4e-14  Score=138.36  Aligned_cols=220  Identities=17%  Similarity=0.251  Sum_probs=158.0

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCcee----EE------------E--ecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVL----ME------------M--VGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--   59 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i----~~------------l--~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--   59 (563)
                      ++.+.+++|.||+|--|++ +|+-.    .+            .  ++|...+.++++++|| ++++|+.|+.|.||+  
T Consensus       153 d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~  232 (479)
T KOG0299|consen  153 DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCD  232 (479)
T ss_pred             cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCc
Confidence            4678999999999999998 66422    11            1  3788999999999999 999999999999999  


Q ss_pred             CCceeEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCce
Q 008510           60 DGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGL  129 (563)
Q Consensus        60 ~~~~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i  129 (563)
                      +.+.++.+. |.+.|.+++|-..-. +.++|.|+.|++|++....  ..+.+.+|++.+.        ...-.+..|+++
T Consensus       233 t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s--~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~  310 (479)
T KOG0299|consen  233 TLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS--YVETLYGHQDGVLGIDALSRERCVTVGGRDRTV  310 (479)
T ss_pred             ccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH--HHHHHhCCccceeeechhcccceEEecccccee
Confidence            888899988 999999999986544 9999999999999998754  2334555555443        222345589999


Q ss_pred             EEEeCCCCceeeecccC---CC-----eEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEE
Q 008510          130 KLEDLPGLEALQIPGTN---AG-----QTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDV  201 (563)
Q Consensus       130 ~~~d~~~~~~l~~~g~~---dg-----~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~v  201 (563)
                      ++|+++....+...++.   |.     ...++.+++++.++.|+.....-..+..+  +.+....-....+.  -+|.++
T Consensus       311 rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~--AHgv~~~~~~~~~~--~Witsl  386 (479)
T KOG0299|consen  311 RLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRL--AHGVIPELDPVNGN--FWITSL  386 (479)
T ss_pred             EEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeec--cccccCCccccccc--cceeee
Confidence            99999876655544432   21     12455666778899999765542222111  11100000001111  378888


Q ss_pred             Ec-CCCCeeeeecCCCCCChhHHHHHH
Q 008510          202 DI-GDGEPTRKLPYNRSDNPYDAADKW  227 (563)
Q Consensus       202 d~-~dg~~~~~~~~n~~~~~w~~a~~f  227 (563)
                      .. +.....++++.|+.++.|.+.+.|
T Consensus       387 a~i~~sdL~asGS~~G~vrLW~i~~g~  413 (479)
T KOG0299|consen  387 AVIPGSDLLASGSWSGCVRLWKIEDGL  413 (479)
T ss_pred             EecccCceEEecCCCCceEEEEecCCc
Confidence            88 788889999999999999998764

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.54  E-value=2.8e-14  Score=142.32  Aligned_cols=214  Identities=14%  Similarity=0.186  Sum_probs=144.8

Q ss_pred             CCCEEEEEECCCcEEEEcC---CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEE
Q 008510            2 PGVGIISASHDCTIRLWAL---TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVW   74 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~---~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~   74 (563)
                      ||+.|++||.-.++-|||+   +-+...++....-..|.++.+||. ..++|..||.|+|||  +...++.|+ |++.+.
T Consensus       476 dgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGas  555 (705)
T KOG0639|consen  476 DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS  555 (705)
T ss_pred             CCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCce
Confidence            6889999999999999999   333444454444567899999998 788999999999999  777788888 999999


Q ss_pred             EEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccc----c-cceeEEeeccCCceEEEeCCCCceeeecccCCC
Q 008510           75 DAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYAS----E-LSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAG  148 (563)
Q Consensus        75 ~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~----~-v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg  148 (563)
                      |+.++++|. |-||+.|++||-||++++++..+..+..-.-    . .......+..++.+.+....+.+..+..-|...
T Consensus       556 cIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheSc  635 (705)
T KOG0639|consen  556 CIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESC  635 (705)
T ss_pred             eEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccE
Confidence            999999998 9999999999999999998553322221110    0 112233444556666666655554444333222


Q ss_pred             eEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHH
Q 008510          149 QTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDA  223 (563)
Q Consensus       149 ~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~  223 (563)
                      ...+-+...    -.|=..+|.=+.++.....    .+..+|+.++..-|.++|+ .|.+++.+++-|+...+|.+
T Consensus       636 VLSlKFa~c----GkwfvStGkDnlLnawrtP----yGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  636 VLSLKFAYC----GKWFVSTGKDNLLNAWRTP----YGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             EEEEEeccc----CceeeecCchhhhhhccCc----cccceeeccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            222222111    1122222221222211111    1455788888889999999 89999999999987766654

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.54  E-value=1.2e-13  Score=126.68  Aligned_cols=174  Identities=22%  Similarity=0.300  Sum_probs=128.3

Q ss_pred             CCEEEEEECCCcEEEEcC-CCc--eeEEEecCCCcEEEEEEcCCC---eEEEEeCCCcEEEEc---C-CceeEEEe--cC
Q 008510            3 GVGIISASHDCTIRLWAL-TGQ--VLMEMVGHTAIVYSIDSHASG---LIVSGSEDRFAKIWK---D-GVCVQSIE--HP   70 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~--~i~~l~gH~~~V~~v~~~p~g---~l~s~s~D~tvriWd---~-~~~~~~l~--h~   70 (563)
                      |.+|||||.||.|.||.- .|+  .......|.+.|++|+|.|.+   .|++++.||+|+|.+   + +-....+.  |+
T Consensus        70 G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~  149 (299)
T KOG1332|consen   70 GTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHE  149 (299)
T ss_pred             CcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccc
Confidence            789999999999999998 453  345667899999999999974   799999999999998   3 23333333  88


Q ss_pred             CcEEEEEEccC---C-----------c-EEEEeCCCcEEEEEcCCCceeceeeecccccccc------------eeEEee
Q 008510           71 GCVWDAKFLEN---G-----------D-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS------------QYKLCR  123 (563)
Q Consensus        71 ~~V~~v~~~p~---g-----------~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~------------~~~~~~  123 (563)
                      -.|.+|+|.|-   |           + +++|+.|..|+||+..+++......+++|.+-|.            ..+.+.
T Consensus       150 ~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~  229 (299)
T KOG1332|consen  150 IGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASC  229 (299)
T ss_pred             cccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEe
Confidence            89999999984   4           3 8999999999999999986554445666665443            445577


Q ss_pred             ccCCceEEEeCCCC--------------ceeeecccCCCeEEEEecCCCeEEEEEec-ccceEEEeCcE
Q 008510          124 KKVGGLKLEDLPGL--------------EALQIPGTNAGQTKVVREGDNGVAYSWDM-KEQKWDKLGEV  177 (563)
Q Consensus       124 ~~~~~i~~~d~~~~--------------~~l~~~g~~dg~~~l~~~~~~~~~~~wd~-~~~~w~~~g~v  177 (563)
                      ++||.+-+|.....              .+.....+..|.+..+..++ ..+.+|-. ..|+|.+++.+
T Consensus       230 SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~Gd-Nkvtlwke~~~Gkw~~v~~~  297 (299)
T KOG1332|consen  230 SQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGD-NKVTLWKENVDGKWEEVGEV  297 (299)
T ss_pred             cCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCC-cEEEEEEeCCCCcEEEcccc
Confidence            88899999987522              02233355667776666666 34455643 35688877643

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.53  E-value=1.7e-13  Score=129.75  Aligned_cols=209  Identities=28%  Similarity=0.395  Sum_probs=145.6

Q ss_pred             EEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc---C-------------------
Q 008510            5 GIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK---D-------------------   60 (563)
Q Consensus         5 ~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd---~-------------------   60 (563)
                      .+.++|.|-|.+||.+ +|.|+.+|.||.+.|.|++|++.+ .++++|.|++..||.   .                   
T Consensus       162 i~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e  241 (481)
T KOG0300|consen  162 ICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEE  241 (481)
T ss_pred             ceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhh
Confidence            5789999999999999 899999999999999999999999 899999999999996   1                   


Q ss_pred             ----------------Cc----eeEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccc---
Q 008510           61 ----------------GV----CVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASE---  115 (563)
Q Consensus        61 ----------------~~----~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~---  115 (563)
                                      +.    ++..++ |.+.|.+..|...|+ +++++.|.+-.+||+.++.....  +.+|...   
T Consensus       242 ~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~--LtGHd~ELtH  319 (481)
T KOG0300|consen  242 HSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNI--LTGHDSELTH  319 (481)
T ss_pred             cccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceecc--ccCcchhccc
Confidence                            00    122334 788899999999998 99999999999999999985543  3333322   


Q ss_pred             -----cceeEEeeccCCceEEEeCCCC-ceeee-cccCCCeEEEEecCCCeE-EEEEecccceEEEeCcEeeCCCCCCCc
Q 008510          116 -----LSQYKLCRKKVGGLKLEDLPGL-EALQI-PGTNAGQTKVVREGDNGV-AYSWDMKEQKWDKLGEVVDGPDDGMNR  187 (563)
Q Consensus       116 -----v~~~~~~~~~~~~i~~~d~~~~-~~l~~-~g~~dg~~~l~~~~~~~~-~~~wd~~~~~w~~~g~v~~~~~~~~~~  187 (563)
                           .....+..+.|.+.++||++.. ..+.+ .||.|..+.+++.-++.+ .-.-|.+.+.|+....- ..     -.
T Consensus       320 cstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMR-sp-----lA  393 (481)
T KOG0300|consen  320 CSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMR-SP-----LA  393 (481)
T ss_pred             cccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeecccc-Cc-----ce
Confidence                 3456677888999999999832 11222 288887776655544333 22233333444432110 00     00


Q ss_pred             eeecCcccCcEEEEEcCCCCeeeeecCCC-CCChhHHH
Q 008510          188 PILDGIQYDYVFDVDIGDGEPTRKLPYNR-SDNPYDAA  224 (563)
Q Consensus       188 ~~~~g~~~d~v~~vd~~dg~~~~~~~~n~-~~~~w~~a  224 (563)
                      .+   ....-+..+.+..|.++..+|.|. .+++|+..
T Consensus       394 TI---RtdS~~NRvavs~g~~iIAiPhDNRqvRlfDln  428 (481)
T KOG0300|consen  394 TI---RTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLN  428 (481)
T ss_pred             ee---ecCCccceeEeecCCceEEeccCCceEEEEecC
Confidence            00   111235667776777788888665 56777764

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.53  E-value=1.5e-12  Score=125.87  Aligned_cols=221  Identities=16%  Similarity=0.136  Sum_probs=153.3

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEE
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAK   77 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~   77 (563)
                      .++++|||.|....+|+. +|+...++.||...|.++.|+.+| +++||+.+|.|+||.  ++.....+. .-..+--+.
T Consensus        76 ~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~  155 (399)
T KOG0296|consen   76 NNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLK  155 (399)
T ss_pred             CceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEE
Confidence            468999999999999999 899999999999999999999999 999999999999999  777777775 333666699


Q ss_pred             EccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccccc--------ceeEEeeccCCceEEEeCCCCceeeec-----
Q 008510           78 FLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL--------SQYKLCRKKVGGLKLEDLPGLEALQIP-----  143 (563)
Q Consensus        78 ~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v--------~~~~~~~~~~~~i~~~d~~~~~~l~~~-----  143 (563)
                      |+|.+. ++.|+.||.+-+|.+.++...  ..+.++...+        .+.++++-.+|.|++|+..+.+.+...     
T Consensus       156 WHp~a~illAG~~DGsvWmw~ip~~~~~--kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~  233 (399)
T KOG0296|consen  156 WHPRAHILLAGSTDGSVWMWQIPSQALC--KVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEG  233 (399)
T ss_pred             ecccccEEEeecCCCcEEEEECCCccee--eEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEeccccc
Confidence            999998 899999999999999885322  2233333222        366777888999999999876554332     


Q ss_pred             -----------------ccCCCeEEEEecCCCeEEEEEecccceE-----EEeCcEeeCC----------CCCC------
Q 008510          144 -----------------GTNAGQTKVVREGDNGVAYSWDMKEQKW-----DKLGEVVDGP----------DDGM------  185 (563)
Q Consensus       144 -----------------g~~dg~~~l~~~~~~~~~~~wd~~~~~w-----~~~g~v~~~~----------~~~~------  185 (563)
                                       |+++|...++....+.++...+.+.-..     ..+..+-..+          +.-.      
T Consensus       234 ~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iy  313 (399)
T KOG0296|consen  234 LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIY  313 (399)
T ss_pred             CcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEE
Confidence                             4455666666555555544333100000     0000000000          0000      


Q ss_pred             -----CceeecCcccCcEEEEEcCCCCeeeeecCCCCCChhHHHHH
Q 008510          186 -----NRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADK  226 (563)
Q Consensus       186 -----~~~~~~g~~~d~v~~vd~~dg~~~~~~~~n~~~~~w~~a~~  226 (563)
                           ..+..--|+ +-|..+.|.+...+++..-|+.++.|++...
T Consensus       314 D~a~~~~R~~c~he-~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG  358 (399)
T KOG0296|consen  314 DLAASTLRHICEHE-DGVTKLKWLNTDYLLTACANGKVRQWDARTG  358 (399)
T ss_pred             ecccchhheeccCC-CceEEEEEcCcchheeeccCceEEeeecccc
Confidence                 111112233 5588888844778999999999999998644

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.53  E-value=2.4e-13  Score=134.97  Aligned_cols=202  Identities=16%  Similarity=0.231  Sum_probs=137.9

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-----------CCceeEEEe-
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-----------DGVCVQSIE-   68 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-----------~~~~~~~l~-   68 (563)
                      |.+++.|.-.|.|.+|.+ +|.++..+.+|-..|+|+.|+.|| .|+|||.||.|++|.           +.+.++.+. 
T Consensus        93 G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~  172 (476)
T KOG0646|consen   93 GYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSD  172 (476)
T ss_pred             ceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeecc
Confidence            566666669999999999 999999999999999999999999 999999999999998           234566676 


Q ss_pred             cCCcEEEEEEccCC---cEEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceeeeccc
Q 008510           69 HPGCVWDAKFLENG---DIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGT  145 (563)
Q Consensus        69 h~~~V~~v~~~p~g---~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~  145 (563)
                      |+-+|.++...+.|   +++|+|.|.++|+||+..+.......+.                ..+..--+...+.....|+
T Consensus       173 HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp----------------~si~av~lDpae~~~yiGt  236 (476)
T KOG0646|consen  173 HTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP----------------SSIKAVALDPAERVVYIGT  236 (476)
T ss_pred             CcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC----------------CcceeEEEcccccEEEecC
Confidence            88899999988653   4999999999999999998743222211                1111111222222223344


Q ss_pred             CCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCccc-CcEEEEEc-CCCCeeeeecCCCCCChhHH
Q 008510          146 NAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQY-DYVFDVDI-GDGEPTRKLPYNRSDNPYDA  223 (563)
Q Consensus       146 ~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~-d~v~~vd~-~dg~~~~~~~~n~~~~~w~~  223 (563)
                      .+|.+.+..-      +.|....   ..+. ..+....+.....+.||++ .-|.+..+ -||..++++.-|+.+.+|++
T Consensus       237 ~~G~I~~~~~------~~~~~~~---~~v~-~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi  306 (476)
T KOG0646|consen  237 EEGKIFQNLL------FKLSGQS---AGVN-QKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDI  306 (476)
T ss_pred             CcceEEeeeh------hcCCccc---cccc-ccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEec
Confidence            4444332111      1111000   0000 0111112224556788875 36888888 89999999999999999999


Q ss_pred             HHHHHHh
Q 008510          224 ADKWLLK  230 (563)
Q Consensus       224 a~~f~~~  230 (563)
                      .++-|.|
T Consensus       307 ~S~Q~iR  313 (476)
T KOG0646|consen  307 YSKQCIR  313 (476)
T ss_pred             chHHHHH
Confidence            8775443

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.52  E-value=9.9e-14  Score=127.49  Aligned_cols=141  Identities=17%  Similarity=0.236  Sum_probs=115.5

Q ss_pred             CCCEEEEEECCCcEEEEcC--CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEE
Q 008510            2 PGVGIISASHDCTIRLWAL--TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDA   76 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~--~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v   76 (563)
                      |.++|++||++.-+|++|+  ..-+..++.||++.|..+-|.... .++|++.|++||+||  ++..++++..+..|.++
T Consensus       111 ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSl  190 (334)
T KOG0278|consen  111 DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSL  190 (334)
T ss_pred             cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcce
Confidence            4578999999999999999  345678899999999999998765 888999999999999  99999999988899999


Q ss_pred             EEccCCcEEEEeCCCcEEEEEcCCCceeceeeecccc-----cccceeEEeeccCCceEEEeCCCCceeee
Q 008510           77 KFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYA-----SELSQYKLCRKKVGGLKLEDLPGLEALQI  142 (563)
Q Consensus        77 ~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~i~~~d~~~~~~l~~  142 (563)
                      .++++|+|++-...+.|.+||..+-.......+..-.     ..-....+++..+..+..+|+.+++.+..
T Consensus       191 Evs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~  261 (334)
T KOG0278|consen  191 EVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS  261 (334)
T ss_pred             eeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeee
Confidence            9999999999999999999999887644333222111     11225677888999999999987765544

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.50  E-value=9.7e-13  Score=130.02  Aligned_cols=164  Identities=18%  Similarity=0.209  Sum_probs=124.2

Q ss_pred             CEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc-C--CceeEEEecCCcEEEEE
Q 008510            4 VGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK-D--GVCVQSIEHPGCVWDAK   77 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd-~--~~~~~~l~h~~~V~~v~   77 (563)
                      +.|||||.|.||++||+ +|+|..++.-|...|.++.|+|..  .+++||.|++|++.| .  ...-..++..+.|-.++
T Consensus       257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~  336 (463)
T KOG0270|consen  257 NVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVA  336 (463)
T ss_pred             eeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEE
Confidence            57999999999999999 999999999999999999999975  899999999999999 2  23334455678899999


Q ss_pred             EccCCc--EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEE---------eeccCCceEEEeCCCCceeeec---
Q 008510           78 FLENGD--IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKL---------CRKKVGGLKLEDLPGLEALQIP---  143 (563)
Q Consensus        78 ~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~---------~~~~~~~i~~~d~~~~~~l~~~---  143 (563)
                      |.|...  ++++..||+||-+|.|... -+...+++|...+.+..+         +++.++.+++|++...+.-...   
T Consensus       337 w~~~se~~f~~~tddG~v~~~D~R~~~-~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~  415 (463)
T KOG0270|consen  337 WDPHSENSFFVSTDDGTVYYFDIRNPG-KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHS  415 (463)
T ss_pred             ecCCCceeEEEecCCceEEeeecCCCC-CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccccc
Confidence            999876  8899999999999999875 355677777777665443         4567789999998754331111   


Q ss_pred             ----------ccCCCeEEEEecCCCeEEEEEeccc
Q 008510          144 ----------GTNAGQTKVVREGDNGVAYSWDMKE  168 (563)
Q Consensus       144 ----------g~~dg~~~l~~~~~~~~~~~wd~~~  168 (563)
                                ..++-...+..++.+.+..+||..+
T Consensus       416 ~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~  450 (463)
T KOG0270|consen  416 FKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFT  450 (463)
T ss_pred             ccccceeecccCCCcceEEEecCccceEEEeeccc
Confidence                      2223334445555555666666543

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.48  E-value=5.4e-13  Score=126.08  Aligned_cols=202  Identities=19%  Similarity=0.279  Sum_probs=137.9

Q ss_pred             CCEEEEEECCCcEEEEcCCC---c-eeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe----cCC
Q 008510            3 GVGIISASHDCTIRLWALTG---Q-VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE----HPG   71 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~~g---~-~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~----h~~   71 (563)
                      ...|+|||.|++||++|...   + -.+.+ .....|.+++|+|.| .++.|.+..++|+||  +.+|.-.-.    |++
T Consensus       184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~  262 (430)
T KOG0640|consen  184 ETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG  262 (430)
T ss_pred             hheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccc
Confidence            36799999999999999932   1 22222 345789999999999 788888888999999  777765432    889


Q ss_pred             cEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccc---------cccceeEEeeccCCceEEEeCCCCceee
Q 008510           72 CVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYA---------SELSQYKLCRKKVGGLKLEDLPGLEALQ  141 (563)
Q Consensus        72 ~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~i~~~d~~~~~~l~  141 (563)
                      .|.+|.++++|. -++|+.||.|++||--++|+..... .+|.         ..-..+.++.+.|..+++|.+.++..+.
T Consensus       263 ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~-~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~  341 (430)
T KOG0640|consen  263 AITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIG-NAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLK  341 (430)
T ss_pred             ceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHH-hhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEE
Confidence            999999999999 6999999999999998888654321 1111         1234667788889999999999887776


Q ss_pred             ec-cc--C---CC----------eEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCcee-ecCcccCcEEEEEc-
Q 008510          142 IP-GT--N---AG----------QTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPI-LDGIQYDYVFDVDI-  203 (563)
Q Consensus       142 ~~-g~--~---dg----------~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~-~~g~~~d~v~~vd~-  203 (563)
                      .. |-  .   +-          .+.++-.......+.||..+..               ++.+ --||. +-+..+.. 
T Consensus       342 ~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtad---------------r~~l~slgHn-~a~R~i~HS  405 (430)
T KOG0640|consen  342 EYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTAD---------------RVALLSLGHN-GAVRWIVHS  405 (430)
T ss_pred             EEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchh---------------hhhhcccCCC-CCceEEEeC
Confidence            54 21  1   11          1222222222345677765431               1111 22343 44544444 


Q ss_pred             CCCCeeeeecCCCCCChhH
Q 008510          204 GDGEPTRKLPYNRSDNPYD  222 (563)
Q Consensus       204 ~dg~~~~~~~~n~~~~~w~  222 (563)
                      |.+-..++.+.|...+-|-
T Consensus       406 P~~p~FmTcsdD~raRFWy  424 (430)
T KOG0640|consen  406 PVEPAFMTCSDDFRARFWY  424 (430)
T ss_pred             CCCCceeeecccceeeeee
Confidence            6666678888888877774

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.48  E-value=9.4e-13  Score=143.01  Aligned_cols=177  Identities=19%  Similarity=0.292  Sum_probs=131.7

Q ss_pred             CCCEEEEEE--CCCcEEEEcCC-------------CceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CC---
Q 008510            2 PGVGIISAS--HDCTIRLWALT-------------GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DG---   61 (563)
Q Consensus         2 ~g~~l~s~s--~DgtIrlWd~~-------------g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~---   61 (563)
                      ||..|+|||  .||.+++|+.+             .+.+.++..|.+.|.||.|+||| +||+||+|+.|.||. ..   
T Consensus        24 dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~  103 (942)
T KOG0973|consen   24 DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGS  103 (942)
T ss_pred             CceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCC
Confidence            578999999  89999999862             13456778999999999999999 999999999999999 41   


Q ss_pred             ----------------ceeEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc------
Q 008510           62 ----------------VCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS------  117 (563)
Q Consensus        62 ----------------~~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~------  117 (563)
                                      ++...+. |+..|..|+|+|++. +++++.|++|-+|+.++...  ...+.+|...|.      
T Consensus       104 ~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~--~~vl~~H~s~VKGvs~DP  181 (942)
T KOG0973|consen  104 GTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFEL--LKVLRGHQSLVKGVSWDP  181 (942)
T ss_pred             cccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcccccee--eeeeecccccccceEECC
Confidence                            1445555 999999999999998 89999999999999999853  345556655443      


Q ss_pred             --eeEEeeccCCceEEEeCCCCc-----------------eeeecccCCCeEEEEecC---CCeEEEEEecccceEEEeC
Q 008510          118 --QYKLCRKKVGGLKLEDLPGLE-----------------ALQIPGTNAGQTKVVREG---DNGVAYSWDMKEQKWDKLG  175 (563)
Q Consensus       118 --~~~~~~~~~~~i~~~d~~~~~-----------------~l~~~g~~dg~~~l~~~~---~~~~~~~wd~~~~~w~~~g  175 (563)
                        ++..+...|+.|++|....-.                 .+....++||++.+..+.   .+..+.+.+.  +.|.---
T Consensus       182 ~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR--~tWk~~~  259 (942)
T KOG0973|consen  182 IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIER--GTWKVDK  259 (942)
T ss_pred             ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEec--CCceeee
Confidence              555567788999999964311                 122337888888776553   1223444443  6676555


Q ss_pred             cEeeCCC
Q 008510          176 EVVDGPD  182 (563)
Q Consensus       176 ~v~~~~~  182 (563)
                      .++++.+
T Consensus       260 ~LvGH~~  266 (942)
T KOG0973|consen  260 DLVGHSA  266 (942)
T ss_pred             eeecCCC
Confidence            5666544

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.48  E-value=5.4e-13  Score=136.93  Aligned_cols=211  Identities=18%  Similarity=0.214  Sum_probs=140.7

Q ss_pred             CEEEEEECCCcEEEEcC-CCceeEE--EecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc---CCc-------------
Q 008510            4 VGIISASHDCTIRLWAL-TGQVLME--MVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK---DGV-------------   62 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~-~g~~i~~--l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd---~~~-------------   62 (563)
                      ..|++++.|.|+|.||+ .++++..  +.||++.|.++||+|..  .|++||.||.+.|||   ++.             
T Consensus       113 ~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~  192 (720)
T KOG0321|consen  113 SLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGR  192 (720)
T ss_pred             eeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhcc
Confidence            46999999999999999 7778777  89999999999999976  899999999999999   220             


Q ss_pred             ------eeEEE-------e-cCCc----EEEEEEccCCcEEEEeC-CCcEEEEEcCCCceece-eeec-----cc-----
Q 008510           63 ------CVQSI-------E-HPGC----VWDAKFLENGDIVTACS-DGVTRIWTVHSDKVADS-LELE-----AY-----  112 (563)
Q Consensus        63 ------~~~~l-------~-h~~~----V~~v~~~p~g~i~sgs~-Dg~Irvwd~~~~~~~~~-~~~~-----~~-----  112 (563)
                            ..+..       . +...    |+.+.|-.+..||++|. |+.|+|||++....+.. +...     .+     
T Consensus       193 ~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~  272 (720)
T KOG0321|consen  193 HNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSV  272 (720)
T ss_pred             ccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCccccee
Confidence                  00000       0 2222    44454444444888877 99999999997653321 1111     11     


Q ss_pred             ------ccccceeEEeeccCCceEEEeCCCCceee---------------ecccCCCeEEEEecCCCeEEEEEecccceE
Q 008510          113 ------ASELSQYKLCRKKVGGLKLEDLPGLEALQ---------------IPGTNAGQTKVVREGDNGVAYSWDMKEQKW  171 (563)
Q Consensus       113 ------~~~v~~~~~~~~~~~~i~~~d~~~~~~l~---------------~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w  171 (563)
                            .+....+.++...|+.|.+|++++...--               ..-++|+...+..+.+ ..+|+|....- |
T Consensus       273 G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd-~~ayiw~vs~~-e  350 (720)
T KOG0321|consen  273 GQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSD-EQAYIWVVSSP-E  350 (720)
T ss_pred             eeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCC-cceeeeeecCc-c
Confidence                  01122455666779999999998653211               1144566666655554 55677765321 1


Q ss_pred             EEeCcEeeCCCCCCCceeecCcccCcEEEEEc--CCCCeeeeecCCCCCChhHHHHHHHHhc
Q 008510          172 DKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI--GDGEPTRKLPYNRSDNPYDAADKWLLKE  231 (563)
Q Consensus       172 ~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~--~dg~~~~~~~~n~~~~~w~~a~~f~~~~  231 (563)
                      .             ....+.||. -.|+.|++  .+-.++++.+-|.+..+|.+ ...+++.
T Consensus       351 ~-------------~~~~l~Ght-~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l-~~~l~e~  397 (720)
T KOG0321|consen  351 A-------------PPALLLGHT-REVTTVRWLPSATTPVATCSDDFRVKIWRL-SNGLEEI  397 (720)
T ss_pred             C-------------ChhhhhCcc-eEEEEEeeccccCCCceeeccCcceEEEec-cCchhhc
Confidence            1             233466765 56899998  34456888899999999998 3334443

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.47  E-value=2.3e-13  Score=142.37  Aligned_cols=166  Identities=17%  Similarity=0.312  Sum_probs=122.7

Q ss_pred             CCCCEEEEEECCCcEEEEcCC----CceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCceeEEEe-cCC
Q 008510            1 MPGVGIISASHDCTIRLWALT----GQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIE-HPG   71 (563)
Q Consensus         1 ~~g~~l~s~s~DgtIrlWd~~----g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~~~l~-h~~   71 (563)
                      ++.++||||+..|.|-+||+.    .+.+..|..|+..+.+++|++..  +++|||.||+||+||  ..+...++. ...
T Consensus        98 ~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSE  177 (839)
T KOG0269|consen   98 LYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSE  177 (839)
T ss_pred             chhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccch
Confidence            356789999999999999993    34566788999999999999865  899999999999999  666667776 555


Q ss_pred             cEEEEEEccC-Cc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCCcee-
Q 008510           72 CVWDAKFLEN-GD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLEAL-  140 (563)
Q Consensus        72 ~V~~v~~~p~-g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~~l-  140 (563)
                      .|+.|.|+|. +. ++++...|.++.||+|..+.. ...+.+|.+.|.        ....+++.|+.|++||+.+...- 
T Consensus       178 SiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~-~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~  256 (839)
T KOG0269|consen  178 SIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRC-EKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKP  256 (839)
T ss_pred             hhhceeeccCCCceEEEecCCceEEEeeccCchhH-HHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccc
Confidence            9999999994 44 999999999999999987622 223344444432        44567889999999999754321 


Q ss_pred             -----------eecccCCCeEEEEecC--CCeEEEEEecc
Q 008510          141 -----------QIPGTNAGQTKVVREG--DNGVAYSWDMK  167 (563)
Q Consensus       141 -----------~~~g~~dg~~~l~~~~--~~~~~~~wd~~  167 (563)
                                 .+.+.++.+..+..+.  ++..+++||.+
T Consensus       257 ~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvr  296 (839)
T KOG0269|consen  257 KHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVR  296 (839)
T ss_pred             eeEEeecceeeeeeeccCccchhhhhhccccceEEEEeec
Confidence                       1113445444444433  34557888864

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.47  E-value=9.5e-13  Score=130.58  Aligned_cols=139  Identities=19%  Similarity=0.268  Sum_probs=112.5

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA   76 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v   76 (563)
                      ||++|++|+.|..|.||+. +++.++.+.||.+.|.+++|-... .+.++|.|++|++|+  ....+.++. |++.|..+
T Consensus       213 Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I  292 (479)
T KOG0299|consen  213 DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI  292 (479)
T ss_pred             CCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence            6899999999999999999 899999999999999999997655 899999999999999  555666666 99999999


Q ss_pred             EEccCCcE-EEEeCCCcEEEEEcCCCceeceeeecccccccce-------eEEeeccCCceEEEeCCCCceeeec
Q 008510           77 KFLENGDI-VTACSDGVTRIWTVHSDKVADSLELEAYASELSQ-------YKLCRKKVGGLKLEDLPGLEALQIP  143 (563)
Q Consensus        77 ~~~p~g~i-~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~-------~~~~~~~~~~i~~~d~~~~~~l~~~  143 (563)
                      ..+..++. -+|+.|+++|+|++....+   ....+....+.+       ..++++.+|.|.+|++-....+...
T Consensus       293 daL~reR~vtVGgrDrT~rlwKi~eesq---lifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~  364 (479)
T KOG0299|consen  293 DALSRERCVTVGGRDRTVRLWKIPEESQ---LIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTS  364 (479)
T ss_pred             chhcccceEEeccccceeEEEeccccce---eeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEe
Confidence            99998884 5566999999999955432   233344444443       3456788899999999776665543

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.46  E-value=4.3e-13  Score=129.91  Aligned_cols=99  Identities=24%  Similarity=0.429  Sum_probs=86.7

Q ss_pred             CCEEEEEECCCcEEEEcC-CC---ceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-----CCceeEEEe-cCC
Q 008510            3 GVGIISASHDCTIRLWAL-TG---QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-----DGVCVQSIE-HPG   71 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g---~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-----~~~~~~~l~-h~~   71 (563)
                      ...|+|||.||+|||||+ .+   -++.+ +.|.+-|+-|+|+..- .|++|+.||+++|||     .++.+.++. |.+
T Consensus       270 ~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~  348 (440)
T KOG0302|consen  270 DGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKA  348 (440)
T ss_pred             CceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccC
Confidence            467999999999999999 55   35544 8999999999999876 899999999999999     567788888 999


Q ss_pred             cEEEEEEccCCc--EEEEeCCCcEEEEEcCCCc
Q 008510           72 CVWDAKFLENGD--IVTACSDGVTRIWTVHSDK  102 (563)
Q Consensus        72 ~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~  102 (563)
                      +|+||.|+|...  |+++|.|..|.+||+.-..
T Consensus       349 pItsieW~p~e~s~iaasg~D~QitiWDlsvE~  381 (440)
T KOG0302|consen  349 PITSIEWHPHEDSVIAASGEDNQITIWDLSVEA  381 (440)
T ss_pred             CeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence            999999999654  8999999999999997554

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.46  E-value=2.8e-13  Score=141.83  Aligned_cols=153  Identities=16%  Similarity=0.291  Sum_probs=112.3

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCC-C-eEEEEeCCCcEEEEc---CCceeEEEe-cCCcEEE
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHAS-G-LIVSGSEDRFAKIWK---DGVCVQSIE-HPGCVWD   75 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~-g-~l~s~s~D~tvriWd---~~~~~~~l~-h~~~V~~   75 (563)
                      -.+++|||.||+||.||+ ..+-..++.+....|.+|.|+|. + .|+++.+.|.+++||   ..+|...+. |.+.|.|
T Consensus       146 p~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c  225 (839)
T KOG0269|consen  146 PNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLC  225 (839)
T ss_pred             ccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEE
Confidence            368999999999999999 77778889999999999999996 4 899999999999999   556666666 9999999


Q ss_pred             EEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccccccee--------EE--e-eccCCceEEEeCCCCceeeec
Q 008510           76 AKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQY--------KL--C-RKKVGGLKLEDLPGLEALQIP  143 (563)
Q Consensus        76 v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~--------~~--~-~~~~~~i~~~d~~~~~~l~~~  143 (563)
                      +.|+|++. |||||.|+.|+|||..+.+.-+...+.... .+..+        .+  + ...+-.|.+||++.+=+....
T Consensus       226 ~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTia-pv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t  304 (839)
T KOG0269|consen  226 LNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIA-PVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYAT  304 (839)
T ss_pred             EeecCCCceeeecCCCccEEEEeccCCCccceeEEeecc-eeeeeeeccCccchhhhhhccccceEEEEeecccccccee
Confidence            99999888 999999999999999877633322222111 11111        11  1 123468999999755333222


Q ss_pred             --ccCCCeEEEEecC
Q 008510          144 --GTNAGQTKVVREG  156 (563)
Q Consensus       144 --g~~dg~~~l~~~~  156 (563)
                        .|.+-...+++.+
T Consensus       305 ~~eH~~~vt~i~W~~  319 (839)
T KOG0269|consen  305 FLEHTDSVTGIAWDS  319 (839)
T ss_pred             eeccCccccceeccC
Confidence              4444444444443

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.42  E-value=5.7e-12  Score=119.49  Aligned_cols=137  Identities=16%  Similarity=0.230  Sum_probs=102.9

Q ss_pred             CCEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEEEcc
Q 008510            3 GVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKFLE   80 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~~~p   80 (563)
                      ++.|+.+|+||++|+|+.....++....|..++.+++|.++..+++|+-||.||.+|  .++..+.-.|...|.||.+.+
T Consensus        25 ~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~  104 (323)
T KOG1036|consen   25 SSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSY  104 (323)
T ss_pred             CCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeec
Confidence            356777889999999999444444444699999999999877899999999999999  555555555999999999998


Q ss_pred             C-CcEEEEeCCCcEEEEEcCCCceeceeeec--ccccc-cceeEEeeccCCceEEEeCCCCce
Q 008510           81 N-GDIVTACSDGVTRIWTVHSDKVADSLELE--AYASE-LSQYKLCRKKVGGLKLEDLPGLEA  139 (563)
Q Consensus        81 ~-g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~--~~~~~-v~~~~~~~~~~~~i~~~d~~~~~~  139 (563)
                      . |.+++||.|++|++||.+...........  -+.-. .....+.+..+..+.+||++....
T Consensus       105 ~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~  167 (323)
T KOG1036|consen  105 EVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDE  167 (323)
T ss_pred             cCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccc
Confidence            5 44999999999999999974432211111  11111 234555678889999999986544

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.41  E-value=1e-11  Score=117.69  Aligned_cols=203  Identities=18%  Similarity=0.258  Sum_probs=122.6

Q ss_pred             CCCEEEEEECCCcEEEEcC---CC--ceeEEEecCCCcEEEEEEcC-C-C-eEEEEeCCCcEEEEc-C---Cc-------
Q 008510            2 PGVGIISASHDCTIRLWAL---TG--QVLMEMVGHTAIVYSIDSHA-S-G-LIVSGSEDRFAKIWK-D---GV-------   62 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~---~g--~~i~~l~gH~~~V~~v~~~p-~-g-~l~s~s~D~tvriWd-~---~~-------   62 (563)
                      -|+++|+||.|++|+|||.   +|  .+....+.|.+.|..|.|.+ . | .+++||.||+++||. .   .+       
T Consensus        24 ~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv  103 (361)
T KOG2445|consen   24 YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWV  103 (361)
T ss_pred             cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeE
Confidence            3899999999999999996   33  47778899999999999954 4 6 899999999999998 1   11       


Q ss_pred             eeEEEe-cCCcEEEEEEccC--Cc-EEEEeCCCcEEEEEcCCCceeceeeec-ccccccceeEEeeccCCceEEEeCC-C
Q 008510           63 CVQSIE-HPGCVWDAKFLEN--GD-IVTACSDGVTRIWTVHSDKVADSLELE-AYASELSQYKLCRKKVGGLKLEDLP-G  136 (563)
Q Consensus        63 ~~~~l~-h~~~V~~v~~~p~--g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~i~~~d~~-~  136 (563)
                      ...++. ....|..|.|.|.  |- +|+++.||++|||+.-..--+..-.+. .+..-+..-........++. |... -
T Consensus       104 ~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~Cvs-Wn~sr~  182 (361)
T KOG2445|consen  104 RRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVS-WNPSRM  182 (361)
T ss_pred             EEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEe-eccccc
Confidence            122333 5569999999995  44 899999999999997544322211111 11100000000001112222 3311 1


Q ss_pred             CceeeecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-C-CCCe---eee
Q 008510          137 LEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-G-DGEP---TRK  211 (563)
Q Consensus       137 ~~~l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~-dg~~---~~~  211 (563)
                      .+.+...|+.+..    ..-++..+|.++...++|.++.++.+.             . |-|.++.| | -|+.   ++.
T Consensus       183 ~~p~iAvgs~e~a----~~~~~~~Iye~~e~~rKw~kva~L~d~-------------~-dpI~di~wAPn~Gr~y~~lAv  244 (361)
T KOG2445|consen  183 HEPLIAVGSDEDA----PHLNKVKIYEYNENGRKWLKVAELPDH-------------T-DPIRDISWAPNIGRSYHLLAV  244 (361)
T ss_pred             cCceEEEEcccCC----ccccceEEEEecCCcceeeeehhcCCC-------------C-CcceeeeeccccCCceeeEEE
Confidence            1122222322210    001134566677777789988777643             2 66777777 3 3332   444


Q ss_pred             ecCCCCCChhHHH
Q 008510          212 LPYNRSDNPYDAA  224 (563)
Q Consensus       212 ~~~n~~~~~w~~a  224 (563)
                      ..-|+ +++|++.
T Consensus       245 A~kDg-v~I~~v~  256 (361)
T KOG2445|consen  245 ATKDG-VRIFKVK  256 (361)
T ss_pred             eecCc-EEEEEEe
Confidence            45555 7777764

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.40  E-value=3.3e-12  Score=126.75  Aligned_cols=100  Identities=15%  Similarity=0.314  Sum_probs=87.8

Q ss_pred             CCCEEEEEECCCcEEEEcC-C--CceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc---CCceeEEEe-cCCc
Q 008510            2 PGVGIISASHDCTIRLWAL-T--GQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK---DGVCVQSIE-HPGC   72 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~--g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd---~~~~~~~l~-h~~~   72 (563)
                      +...|++++.|+.+.|||+ +  .++.+...+|++.|.|++|+|-+  .|||||.|++|.+||   -.++++++. |...
T Consensus       239 h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~de  318 (422)
T KOG0264|consen  239 HEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDE  318 (422)
T ss_pred             chhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcc
Confidence            3467999999999999999 3  35667788999999999999975  899999999999999   345777887 9999


Q ss_pred             EEEEEEccCCc--EEEEeCCCcEEEEEcCCC
Q 008510           73 VWDAKFLENGD--IVTACSDGVTRIWTVHSD  101 (563)
Q Consensus        73 V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~  101 (563)
                      |.+|.|+|+.+  +++++.|+.+.|||+..-
T Consensus       319 v~~V~WSPh~etvLASSg~D~rl~vWDls~i  349 (422)
T KOG0264|consen  319 VFQVEWSPHNETVLASSGTDRRLNVWDLSRI  349 (422)
T ss_pred             eEEEEeCCCCCceeEecccCCcEEEEecccc
Confidence            99999999876  899999999999999754

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.40  E-value=1.2e-11  Score=129.20  Aligned_cols=186  Identities=19%  Similarity=0.289  Sum_probs=137.6

Q ss_pred             EEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEEEc
Q 008510            5 GIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFL   79 (563)
Q Consensus         5 ~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~~~   79 (563)
                      .++||+ .+.+++|+. +++|++++..  +++.+.+|.|.+ ++++|...|.+.++|  +...+.+++ |.+.+|+++.+
T Consensus       387 ~~~Sga-~~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~  463 (888)
T KOG0306|consen  387 LLASGA-GESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLS  463 (888)
T ss_pred             eeeecC-CCcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeec
Confidence            344444 568999999 7999999974  489999999988 999999999999999  778888888 99999999999


Q ss_pred             cCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceeeecccCCCeEEEEecCCC
Q 008510           80 ENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDN  158 (563)
Q Consensus        80 p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg~~~l~~~~~~  158 (563)
                      ||+. +++||.|.+|++||..--.        . .+......++-.....+.+.    ..++.+..++||.+..+.--|.
T Consensus       464 pD~~g~vT~saDktVkfWdf~l~~--------~-~~gt~~k~lsl~~~rtLel~----ddvL~v~~Spdgk~LaVsLLdn  530 (888)
T KOG0306|consen  464 PDNKGFVTGSADKTVKFWDFKLVV--------S-VPGTQKKVLSLKHTRTLELE----DDVLCVSVSPDGKLLAVSLLDN  530 (888)
T ss_pred             CCCCceEEecCCcEEEEEeEEEEe--------c-cCcccceeeeeccceEEecc----ccEEEEEEcCCCcEEEEEeccC
Confidence            9998 9999999999999975321        0 00111111233333334432    2567777899999988887764


Q ss_pred             eE-EEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHH
Q 008510          159 GV-AYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAA  224 (563)
Q Consensus       159 ~~-~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a  224 (563)
                      .+ +|.-|  +-++     .+          ..=||. =.|.++|+ +|++.+.+++.|+++++|-..
T Consensus       531 TVkVyflD--tlKF-----fl----------sLYGHk-LPV~smDIS~DSklivTgSADKnVKiWGLd  580 (888)
T KOG0306|consen  531 TVKVYFLD--TLKF-----FL----------SLYGHK-LPVLSMDISPDSKLIVTGSADKNVKIWGLD  580 (888)
T ss_pred             eEEEEEec--ceee-----ee----------eecccc-cceeEEeccCCcCeEEeccCCCceEEeccc
Confidence            44 44444  2211     11          122554 45899999 999999999999999999764

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.40  E-value=4.3e-12  Score=125.06  Aligned_cols=182  Identities=20%  Similarity=0.247  Sum_probs=143.2

Q ss_pred             CEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEEE
Q 008510            4 VGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKF   78 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~~   78 (563)
                      ..+++||.|.++-++|. .++.+.+|+||+-.|+++.++|+. .+++++.|..+|||.  ...+..... |...|..+..
T Consensus       232 ~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~  311 (506)
T KOG0289|consen  232 SKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSL  311 (506)
T ss_pred             CcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeee
Confidence            56899999999999999 889999999999999999999998 899999999999999  444555555 9999999999


Q ss_pred             ccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceeeecccCCCeEEEEecCC
Q 008510           79 LENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGD  157 (563)
Q Consensus        79 ~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg~~~l~~~~~  157 (563)
                      +|+|+ +++++.||+..+.|++++++.....-                       +-.+-+......|+||-+......|
T Consensus       312 h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~-----------------------~~s~v~~ts~~fHpDgLifgtgt~d  368 (506)
T KOG0289|consen  312 HPTGEYLLSASNDGTWAFSDISSGSQLTVVSD-----------------------ETSDVEYTSAAFHPDGLIFGTGTPD  368 (506)
T ss_pred             ccCCcEEEEecCCceEEEEEccCCcEEEEEee-----------------------ccccceeEEeeEcCCceEEeccCCC
Confidence            99999 99999999999999999984321110                       0011112234478888777766666


Q ss_pred             CeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHHH
Q 008510          158 NGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAAD  225 (563)
Q Consensus       158 ~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~  225 (563)
                       +++.+||...+.               ...-|.||+ ..|-.+.| ++|-.++....|..+..|+...
T Consensus       369 -~~vkiwdlks~~---------------~~a~Fpght-~~vk~i~FsENGY~Lat~add~~V~lwDLRK  420 (506)
T KOG0289|consen  369 -GVVKIWDLKSQT---------------NVAKFPGHT-GPVKAISFSENGYWLATAADDGSVKLWDLRK  420 (506)
T ss_pred             -ceEEEEEcCCcc---------------ccccCCCCC-CceeEEEeccCceEEEEEecCCeEEEEEehh
Confidence             666778875542               122367766 78999999 8888888888888899999853

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.40  E-value=1.9e-11  Score=115.10  Aligned_cols=215  Identities=15%  Similarity=0.144  Sum_probs=134.5

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCC---C-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHAS---G-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCV   73 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~---g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V   73 (563)
                      |...|.|+|.|.++|+||. +-+....|+ -.+.||+-+++|-   . .+++|..|-.||+-|  +|.+-+++. |.+.|
T Consensus       113 DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~v  191 (397)
T KOG4283|consen  113 DTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGV  191 (397)
T ss_pred             cCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCce
Confidence            5568999999999999999 555555554 5788999999984   2 678888888999999  999999999 99999


Q ss_pred             EEEEEccCCc--EEEEeCCCcEEEEEcCCCc-ee---cee---------eecccccccceeEE--------eeccCCceE
Q 008510           74 WDAKFLENGD--IVTACSDGVTRIWTVHSDK-VA---DSL---------ELEAYASELSQYKL--------CRKKVGGLK  130 (563)
Q Consensus        74 ~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~-~~---~~~---------~~~~~~~~v~~~~~--------~~~~~~~i~  130 (563)
                      .+|.|+|..+  +++|+.||.||+||+|... +.   ...         .-.++...+.....        ....+..++
T Consensus       192 laV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r  271 (397)
T KOG4283|consen  192 LAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIR  271 (397)
T ss_pred             EEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceE
Confidence            9999999888  7999999999999998541 11   000         01122223333333        344567889


Q ss_pred             EEeCCCCceeeec-ccC-----CCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-
Q 008510          131 LEDLPGLEALQIP-GTN-----AGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-  203 (563)
Q Consensus       131 ~~d~~~~~~l~~~-g~~-----dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-  203 (563)
                      +|....++..... |..     .+.-....+.+..+....-.. +..-     +-....+...+.+++| +..+.+..+ 
T Consensus       272 ~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~-~~la-----ll~~~sgs~ir~l~~h-~k~i~c~~~~  344 (397)
T KOG4283|consen  272 VWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPND-GSLA-----LLNLLEGSFVRRLSTH-LKRINCAAYR  344 (397)
T ss_pred             EeecccCcccccccccccccccccceEEEeecccceEEEEecC-CeEE-----EEEccCceEEEeeecc-cceeeEEeec
Confidence            9988665443222 111     010011111111111111000 0000     0000111134445566 455555555 


Q ss_pred             CCCCeeeeecCCCCCChhHHH
Q 008510          204 GDGEPTRKLPYNRSDNPYDAA  224 (563)
Q Consensus       204 ~dg~~~~~~~~n~~~~~w~~a  224 (563)
                      ++=+..+++..|.++.+|..+
T Consensus       345 ~~fq~~~tg~~d~ni~~w~p~  365 (397)
T KOG4283|consen  345 PDFEQCFTGDMNGNIYMWSPA  365 (397)
T ss_pred             CchhhhhccccCCcccccccc
Confidence            777778899999999999885

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.39  E-value=2.2e-12  Score=126.19  Aligned_cols=171  Identities=19%  Similarity=0.272  Sum_probs=127.5

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEe-cCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe--cCCcEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMV-GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE--HPGCVWD   75 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~-gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~--h~~~V~~   75 (563)
                      |++++++|+.|..+++||+ +|++...+. +|...+.|++|.||| .+++||.|+++..|| +|+.+...+  ..-.|++
T Consensus       280 DdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~d  359 (519)
T KOG0293|consen  280 DDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHD  359 (519)
T ss_pred             CCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEE
Confidence            5789999999999999999 899887764 355789999999999 999999999999999 888877776  2337999


Q ss_pred             EEEccCCc-EEEEeCCCcEEEEEcCCCcee----ceeeecccccc-cceeEEeeccCCceEEEeCCCCceeeec-ccCCC
Q 008510           76 AKFLENGD-IVTACSDGVTRIWTVHSDKVA----DSLELEAYASE-LSQYKLCRKKVGGLKLEDLPGLEALQIP-GTNAG  148 (563)
Q Consensus        76 v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~----~~~~~~~~~~~-v~~~~~~~~~~~~i~~~d~~~~~~l~~~-g~~dg  148 (563)
                      ++..+||. +++.+.|..|++|+..+....    ....+..+.-+ -..+.+..-.+..+.+||+.....+... |++.|
T Consensus       360 lait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~  439 (519)
T KOG0293|consen  360 LAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQG  439 (519)
T ss_pred             EEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhccccc
Confidence            99999999 888889999999998765322    11122222211 2345556667789999999855433322 44433


Q ss_pred             e------------EEEEecCCCeEEEEEecccceEE
Q 008510          149 Q------------TKVVREGDNGVAYSWDMKEQKWD  172 (563)
Q Consensus       149 ~------------~~l~~~~~~~~~~~wd~~~~~w~  172 (563)
                      .            ..+..++.+..+|+|+...+.-.
T Consensus       440 ~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll  475 (519)
T KOG0293|consen  440 HFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLL  475 (519)
T ss_pred             ceEEEeccCCCCcceEEecCCCceEEEEEccCCcee
Confidence            2            24555556688999998887644

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.39  E-value=3.9e-12  Score=127.68  Aligned_cols=99  Identities=23%  Similarity=0.399  Sum_probs=79.5

Q ss_pred             CEEEEEECCCcEEEEcC-C-CceeEEEe-----cCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CC---ceeEEEe--c
Q 008510            4 VGIISASHDCTIRLWAL-T-GQVLMEMV-----GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DG---VCVQSIE--H   69 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~-~-g~~i~~l~-----gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~---~~~~~l~--h   69 (563)
                      ..|+|||.||++|+|++ . .+.+..++     |..-.+.+++|+++| .+++|+.||+|.+|+ .+   +....+.  |
T Consensus       282 ~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH  361 (641)
T KOG0772|consen  282 EEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAH  361 (641)
T ss_pred             cceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeecc
Confidence            56999999999999999 2 23333332     333467899999999 899999999999999 22   2333333  7


Q ss_pred             CC--cEEEEEEccCCc-EEEEeCCCcEEEEEcCCCc
Q 008510           70 PG--CVWDAKFLENGD-IVTACSDGVTRIWTVHSDK  102 (563)
Q Consensus        70 ~~--~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~  102 (563)
                      ..  .|.||+|+++|+ +++-|.|+++++||++..+
T Consensus       362 ~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k  397 (641)
T KOG0772|consen  362 LPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK  397 (641)
T ss_pred             CCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence            66  899999999999 9999999999999999876

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.39  E-value=4.2e-12  Score=121.19  Aligned_cols=98  Identities=24%  Similarity=0.434  Sum_probs=91.7

Q ss_pred             CEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCceeEEEe----cCCcEE
Q 008510            4 VGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIE----HPGCVW   74 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~~~l~----h~~~V~   74 (563)
                      -++|.||.-|.|||-|+ ++++.+.+.||...|..+.++|+.  .++|+|.|.+||+|+  +..|+..+.    |.+.|.
T Consensus       106 p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVL  185 (385)
T KOG1034|consen  106 PFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVL  185 (385)
T ss_pred             eeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEE
Confidence            46888889999999999 899999999999999999999987  899999999999999  889998886    999999


Q ss_pred             EEEEccCCc-EEEEeCCCcEEEEEcCCC
Q 008510           75 DAKFLENGD-IVTACSDGVTRIWTVHSD  101 (563)
Q Consensus        75 ~v~~~p~g~-i~sgs~Dg~Irvwd~~~~  101 (563)
                      +|.|+++|+ |+++|.|.++++|++...
T Consensus       186 SvD~~~~gd~i~ScGmDhslk~W~l~~~  213 (385)
T KOG1034|consen  186 SVDFSLDGDRIASCGMDHSLKLWRLNVK  213 (385)
T ss_pred             EEEEcCCCCeeeccCCcceEEEEecChh
Confidence            999999999 999999999999999844

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.37  E-value=5.9e-13  Score=138.37  Aligned_cols=100  Identities=20%  Similarity=0.465  Sum_probs=91.2

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEE
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAK   77 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~   77 (563)
                      ++.+++|+.|..+-+|.. .-.++..|.||++.|.|+.|+++. .+++|+.||+||+||  .++.++++. |...+.+|.
T Consensus        40 ~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~  119 (825)
T KOG0267|consen   40 SRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVD  119 (825)
T ss_pred             ceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceee
Confidence            577899999999999998 667777899999999999999987 899999999999999  888888888 999999999


Q ss_pred             EccCCc-EEEEeCCCcEEEEEcCCCc
Q 008510           78 FLENGD-IVTACSDGVTRIWTVHSDK  102 (563)
Q Consensus        78 ~~p~g~-i~sgs~Dg~Irvwd~~~~~  102 (563)
                      |+|-|. .++|+.|+.+++||.+..-
T Consensus       120 f~P~~~~~a~gStdtd~~iwD~Rk~G  145 (825)
T KOG0267|consen  120 FHPYGEFFASGSTDTDLKIWDIRKKG  145 (825)
T ss_pred             eccceEEeccccccccceehhhhccC
Confidence            999998 8999999999999998543

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.36  E-value=1e-10  Score=121.40  Aligned_cols=140  Identities=19%  Similarity=0.248  Sum_probs=109.4

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEE---Ee-cCCcEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQS---IE-HPGCVW   74 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~---l~-h~~~V~   74 (563)
                      +|.+|+|.+.+|+|.-||+ +++.+..+....+.|++++.+|.+ .++.|++||.+...+ ....++.   +. .++.|.
T Consensus        79 e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvL  158 (691)
T KOG2048|consen   79 EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVL  158 (691)
T ss_pred             cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEE
Confidence            5778999999999999999 999999999999999999999998 899999999777777 3333322   22 567999


Q ss_pred             EEEEccCCc-EEEEeCCCcEEEEEcCCCceeceee--eccccc-c----------cceeEEeeccCCceEEEeCCCCcee
Q 008510           75 DAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLE--LEAYAS-E----------LSQYKLCRKKVGGLKLEDLPGLEAL  140 (563)
Q Consensus        75 ~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~--~~~~~~-~----------v~~~~~~~~~~~~i~~~d~~~~~~l  140 (563)
                      +++|+|+|. |++||.||.||+||..++.......  +..... .          -....+++++.|.|++||......+
T Consensus       159 slsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLi  238 (691)
T KOG2048|consen  159 SLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLI  238 (691)
T ss_pred             EEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchh
Confidence            999999998 9999999999999999987554111  111111 0          1244567888899999998766444


Q ss_pred             e
Q 008510          141 Q  141 (563)
Q Consensus       141 ~  141 (563)
                      +
T Consensus       239 q  239 (691)
T KOG2048|consen  239 Q  239 (691)
T ss_pred             h
Confidence            3

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.34  E-value=1.4e-11  Score=127.47  Aligned_cols=152  Identities=19%  Similarity=0.260  Sum_probs=107.8

Q ss_pred             CCEEEEEECCCcEEEEcC-CCc-eeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510            3 GVGIISASHDCTIRLWAL-TGQ-VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA   76 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~-~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v   76 (563)
                      +..+.+|+.|+.|..+|+ ..+ ...++.+|...|+.++|++|+ +++|||.|+.+.|||  +.+.++.+. |.+.|..+
T Consensus       270 ~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~  349 (484)
T KOG0305|consen  270 SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKAL  349 (484)
T ss_pred             CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEe
Confidence            467899999999999999 443 334589999999999999999 999999999999999  556666666 99999999


Q ss_pred             EEccC--CcEEEE--eCCCcEEEEEcCCCceeceeeecccccccceeE--------Ee--eccCCceEEEeCCCCceeee
Q 008510           77 KFLEN--GDIVTA--CSDGVTRIWTVHSDKVADSLELEAYASELSQYK--------LC--RKKVGGLKLEDLPGLEALQI  142 (563)
Q Consensus        77 ~~~p~--g~i~sg--s~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~--------~~--~~~~~~i~~~d~~~~~~l~~  142 (563)
                      +|+|-  |.+|+|  +.|+.|++||..++.......-.   ..|..+.        ++  +-..+.|.+|+++....+..
T Consensus       350 awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg---sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~  426 (484)
T KOG0305|consen  350 AWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG---SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAE  426 (484)
T ss_pred             eeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccC---CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeee
Confidence            99994  347776  46999999999988744322111   1122111        11  22346889999976544332


Q ss_pred             c-ccCCCeEEEEecCC
Q 008510          143 P-GTNAGQTKVVREGD  157 (563)
Q Consensus       143 ~-g~~dg~~~l~~~~~  157 (563)
                      . ||......+..++|
T Consensus       427 l~gH~~RVl~la~SPd  442 (484)
T KOG0305|consen  427 LLGHTSRVLYLALSPD  442 (484)
T ss_pred             ecCCcceeEEEEECCC
Confidence            2 44444434443333

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.33  E-value=1.9e-11  Score=113.32  Aligned_cols=189  Identities=19%  Similarity=0.213  Sum_probs=128.3

Q ss_pred             EEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe---cCCcEEEEEEccCC-c-EEEEeCCCcEEEEE
Q 008510           26 MEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE---HPGCVWDAKFLENG-D-IVTACSDGVTRIWT   97 (563)
Q Consensus        26 ~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~---h~~~V~~v~~~p~g-~-i~sgs~Dg~Irvwd   97 (563)
                      +.+.+|...|.+|+|+-+| .+++|+.|+++++|+  ..+......   |.+.|-.++|.|.. + +++++.|.+||+||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            5678999999999999999 999999999999999  333333332   88899999999854 3 89999999999999


Q ss_pred             cCCCceeceeeecccc-----cccceeEEeeccCCceEEEeCCCCceeeec----------ccCCCeEEEEecCCCeEEE
Q 008510           98 VHSDKVADSLELEAYA-----SELSQYKLCRKKVGGLKLEDLPGLEALQIP----------GTNAGQTKVVREGDNGVAY  162 (563)
Q Consensus        98 ~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~----------g~~dg~~~l~~~~~~~~~~  162 (563)
                      .+++++....+...-.     .+.....+.+..+..|.+.|.++.......          .+.++.+.+..++.+.+  
T Consensus        94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v--  171 (313)
T KOG1407|consen   94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCV--  171 (313)
T ss_pred             eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceE--
Confidence            9999865443322111     123345555566667777777655443222          12222222222222221  


Q ss_pred             EEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHHHHHHHhc
Q 008510          163 SWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAADKWLLKE  231 (563)
Q Consensus       163 ~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~~f~~~~  231 (563)
                                   ++...+. -...+.++.|. -..++|.| |+|++.+.++-|..+..|++.+--|.|.
T Consensus       172 -------------~ILsyps-Lkpv~si~AH~-snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~  226 (313)
T KOG1407|consen  172 -------------EILSYPS-LKPVQSIKAHP-SNCICIEFDPDGRYFATGSADALVSLWDVDELICERC  226 (313)
T ss_pred             -------------EEEeccc-cccccccccCC-cceEEEEECCCCceEeeccccceeeccChhHhhhhee
Confidence                         0111111 01334466676 55899999 9999999999999999999988776653

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.33  E-value=4.3e-12  Score=122.50  Aligned_cols=232  Identities=15%  Similarity=0.216  Sum_probs=137.8

Q ss_pred             eeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEEEccCCcEEEEeCCCcEEEEEc
Q 008510           24 VLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGDIVTACSDGVTRIWTV   98 (563)
Q Consensus        24 ~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~   98 (563)
                      .+..+.||.+.|+|++=+|..  .++||+.||.|+|||  +..|+.++. |.+.|..+++.. +.++++|.|.+|+.|..
T Consensus        58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~  136 (433)
T KOG0268|consen   58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKI  136 (433)
T ss_pred             chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc-cceEEecCCcceeeeec
Confidence            345679999999999999987  799999999999999  778999999 999999999987 55999999999999997


Q ss_pred             CCCceeceeeecccccccceeE---EeeccCCceEEEeCCCCceeee-----------cccCCCeEEEEecCCCeEEEEE
Q 008510           99 HSDKVADSLELEAYASELSQYK---LCRKKVGGLKLEDLPGLEALQI-----------PGTNAGQTKVVREGDNGVAYSW  164 (563)
Q Consensus        99 ~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~i~~~d~~~~~~l~~-----------~g~~dg~~~l~~~~~~~~~~~w  164 (563)
                      ... .+........-..++...   .-......|.+||......++.           ...+--...+..++.+..++++
T Consensus       137 ~~~-p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLy  215 (433)
T KOG0268|consen  137 DGP-PLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLY  215 (433)
T ss_pred             cCC-cceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEE
Confidence            653 111110000000011100   0011112567777632211111           1111111122222223334444


Q ss_pred             ecccc---------------eEEEeCc-EeeCCCCCC-----------CceeecCcccCcEEEEEc-CCCCeeeeecCCC
Q 008510          165 DMKEQ---------------KWDKLGE-VVDGPDDGM-----------NRPILDGIQYDYVFDVDI-GDGEPTRKLPYNR  216 (563)
Q Consensus       165 d~~~~---------------~w~~~g~-v~~~~~~~~-----------~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~  216 (563)
                      |..+.               .|.+-+. ++.+..+..           ....|.||- .-|.+||+ +.|+.+.+++||+
T Consensus       216 D~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhv-sAV~dVdfsptG~EfvsgsyDk  294 (433)
T KOG0268|consen  216 DLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHV-SAVMDVDFSPTGQEFVSGSYDK  294 (433)
T ss_pred             ecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccc-eeEEEeccCCCcchhccccccc
Confidence            44332               2443211 122222211           334566665 66899999 9999999999999


Q ss_pred             CCChhHHHHHHHHhcCCCcccHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCCCCCCCCC
Q 008510          217 SDNPYDAADKWLLKENLPFSYRQQIVEFILQNTGQKDFTLNTSFRDPYTGASAYVPGQPSS  277 (563)
Q Consensus       217 ~~~~w~~a~~f~~~~~l~~~~~~~v~~fi~~n~~~~~~~~~~~~~~p~~~~~~y~p~~~~~  277 (563)
                      ++++|.+....-          ..|  |-.+.++.+       ++-.|+-.++|+-.++-.
T Consensus       295 sIRIf~~~~~~S----------Rdi--YhtkRMq~V-------~~Vk~S~Dskyi~SGSdd  336 (433)
T KOG0268|consen  295 SIRIFPVNHGHS----------RDI--YHTKRMQHV-------FCVKYSMDSKYIISGSDD  336 (433)
T ss_pred             eEEEeecCCCcc----------hhh--hhHhhhhee-------eEEEEeccccEEEecCCC
Confidence            999999854311          111  344444443       344566667777665443

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.33  E-value=4.6e-11  Score=109.70  Aligned_cols=140  Identities=25%  Similarity=0.345  Sum_probs=104.6

Q ss_pred             EEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEE-cCCCeEEEEeCCCcEEEEc--CCceeEEEe---cCC------
Q 008510            5 GIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDS-HASGLIVSGSEDRFAKIWK--DGVCVQSIE---HPG------   71 (563)
Q Consensus         5 ~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~-~p~g~l~s~s~D~tvriWd--~~~~~~~l~---h~~------   71 (563)
                      -++.++.|+.+.-||+ +|+..++++||+++|.++.- +.++.+.||++||++||||  ++++++++.   |+.      
T Consensus       128 Si~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~  207 (325)
T KOG0649|consen  128 SILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDW  207 (325)
T ss_pred             cEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCccc
Confidence            4556668999999999 99999999999999999987 3445999999999999999  889998886   321      


Q ss_pred             cEEEEEEccCCcEEEEeCCCcEEEEEcCCCceeceeeeccccccc---ceeEEeeccCCceEEEeCCCCceeeecc
Q 008510           72 CVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASEL---SQYKLCRKKVGGLKLEDLPGLEALQIPG  144 (563)
Q Consensus        72 ~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v---~~~~~~~~~~~~i~~~d~~~~~~l~~~g  144 (563)
                      .-|-.+..-+.+-..++..-.+.+|.+++.......++.+....+   ....+.+.+.+++.-|.+.+.-....++
T Consensus       208 g~wigala~~edWlvCGgGp~lslwhLrsse~t~vfpipa~v~~v~F~~d~vl~~G~g~~v~~~~l~Gvl~a~ip~  283 (325)
T KOG0649|consen  208 GKWIGALAVNEDWLVCGGGPKLSLWHLRSSESTCVFPIPARVHLVDFVDDCVLIGGEGNHVQSYTLNGVLQANIPV  283 (325)
T ss_pred             CceeEEEeccCceEEecCCCceeEEeccCCCceEEEecccceeEeeeecceEEEeccccceeeeeeccEEEEeccC
Confidence            222233334556445555678999999999888788887766553   3556666767788888877543333443

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.33  E-value=1.1e-11  Score=126.92  Aligned_cols=101  Identities=22%  Similarity=0.403  Sum_probs=89.2

Q ss_pred             CCCEEEEEECCCcEEEEcC--CC------ceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCceeEEEe-
Q 008510            2 PGVGIISASHDCTIRLWAL--TG------QVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIE-   68 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~--~g------~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~~~l~-   68 (563)
                      |..+++.++.||.|++|.+  .|      ++...+.+|...|+++.|+|=.  .+++++.|-+|++||  +++....+. 
T Consensus       639 D~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~g  718 (1012)
T KOG1445|consen  639 DDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVG  718 (1012)
T ss_pred             ChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheecc
Confidence            5678999999999999998  22      4567889999999999999954  899999999999999  555555565 


Q ss_pred             cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCc
Q 008510           69 HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDK  102 (563)
Q Consensus        69 h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~  102 (563)
                      |++.|..++|+|+|+ +++.|.||+||||..+++.
T Consensus       719 HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e  753 (1012)
T KOG1445|consen  719 HTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE  753 (1012)
T ss_pred             CcCceeEEEECCCCcceeeeecCceEEEeCCCCCC
Confidence            999999999999999 9999999999999998875

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.32  E-value=1.3e-10  Score=110.44  Aligned_cols=100  Identities=20%  Similarity=0.255  Sum_probs=83.4

Q ss_pred             CCCEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEEE
Q 008510            2 PGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKF   78 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~~   78 (563)
                      |...+++|+-||.||++|+.+.....+..|...|.|+..++.. .+++||+|++|++||  ...+..++..+..|.|+..
T Consensus        64 d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v  143 (323)
T KOG1036|consen   64 DESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV  143 (323)
T ss_pred             CCceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEec
Confidence            4567899999999999999555556677899999999999854 999999999999999  4445555666779999987


Q ss_pred             ccCCcEEEEeCCCcEEEEEcCCCc
Q 008510           79 LENGDIVTACSDGVTRIWTVHSDK  102 (563)
Q Consensus        79 ~p~g~i~sgs~Dg~Irvwd~~~~~  102 (563)
                      ..+ +|+.|+.|..|.+||++.-.
T Consensus       144 ~g~-~LvVg~~~r~v~iyDLRn~~  166 (323)
T KOG1036|consen  144 SGN-RLVVGTSDRKVLIYDLRNLD  166 (323)
T ss_pred             cCC-EEEEeecCceEEEEEccccc
Confidence            543 49999999999999999765

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.32  E-value=7.2e-11  Score=109.89  Aligned_cols=183  Identities=19%  Similarity=0.284  Sum_probs=121.9

Q ss_pred             EEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCC
Q 008510           27 EMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSD  101 (563)
Q Consensus        27 ~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~  101 (563)
                      .+.||..+++.+.++.+| .|.||+.|.+..||-  +|+.+.++. |++.|||+....+.+ +++|+.|.++++||+.+|
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence            368999999999999999 999999999999999  899999998 999999999999888 999999999999999999


Q ss_pred             ceeceeeecc----cccccc--eeEEe----eccCCceEEEeCCCCc--------eeeec----------ccCCCeEEEE
Q 008510          102 KVADSLELEA----YASELS--QYKLC----RKKVGGLKLEDLPGLE--------ALQIP----------GTNAGQTKVV  153 (563)
Q Consensus       102 ~~~~~~~~~~----~~~~v~--~~~~~----~~~~~~i~~~d~~~~~--------~l~~~----------g~~dg~~~l~  153 (563)
                      ++.-......    ..-...  ...++    ....+.|.++|++..+        .+.++          ..+-+++.+.
T Consensus        85 k~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~  164 (327)
T KOG0643|consen   85 KQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIA  164 (327)
T ss_pred             cEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEE
Confidence            9654332211    111111  11111    1223567788877322        11111          2223333443


Q ss_pred             ecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHHH
Q 008510          154 REGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAAD  225 (563)
Q Consensus       154 ~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~  225 (563)
                      .+.+ +.+.+||..++.     .++.+.         +-|. ..|.++.+ +|+....+.+-|.+.+.|++..
T Consensus       165 Ghe~-G~is~~da~~g~-----~~v~s~---------~~h~-~~Ind~q~s~d~T~FiT~s~Dttakl~D~~t  221 (327)
T KOG0643|consen  165 GHED-GSISIYDARTGK-----ELVDSD---------EEHS-SKINDLQFSRDRTYFITGSKDTTAKLVDVRT  221 (327)
T ss_pred             ecCC-CcEEEEEcccCc-----eeeech---------hhhc-cccccccccCCcceEEecccCccceeeeccc
Confidence            3333 344466655432     111110         0011 23667777 7888888888888888888754

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.32  E-value=1.4e-12  Score=137.40  Aligned_cols=206  Identities=19%  Similarity=0.345  Sum_probs=136.3

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA   76 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v   76 (563)
                      .|.++++|++|..||||+. ++.|+....||.+.|..++++.+. .++++|.|..||+|.  ++..+..+. |++.|+++
T Consensus       201 tg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtai  280 (1113)
T KOG0644|consen  201 TGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAI  280 (1113)
T ss_pred             ccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeee
Confidence            3789999999999999999 899999999999999999999888 899999999999999  888888888 99999999


Q ss_pred             EEccCCcEEEEeCCCcEEEEEcC-CCceeceeeecccccc-cc--------eeEEeeccCCceEEEeCC-----CCceee
Q 008510           77 KFLENGDIVTACSDGVTRIWTVH-SDKVADSLELEAYASE-LS--------QYKLCRKKVGGLKLEDLP-----GLEALQ  141 (563)
Q Consensus        77 ~~~p~g~i~sgs~Dg~Irvwd~~-~~~~~~~~~~~~~~~~-v~--------~~~~~~~~~~~i~~~d~~-----~~~~l~  141 (563)
                      +|+|-   .+.+.||++++||.+ ..+.....+...-... +.        ....++..++.-..|.++     ......
T Consensus       281 afsP~---~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif  357 (1113)
T KOG0644|consen  281 AFSPR---ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIF  357 (1113)
T ss_pred             ccCcc---ccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEE
Confidence            99996   477899999999998 3332221111111111 11        112233333333333332     111112


Q ss_pred             ecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc--CCCCeeeeecCCCCCC
Q 008510          142 IPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI--GDGEPTRKLPYNRSDN  219 (563)
Q Consensus       142 ~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~--~dg~~~~~~~~n~~~~  219 (563)
                      +.++.|-.-..+........+.|+..+|.               ..+...|+. |++|..++  -+.....+..||+..-
T Consensus       358 ~t~ssd~~~~~~~ar~~~~~~vwnl~~g~---------------l~H~l~ghs-d~~yvLd~Hpfn~ri~msag~dgst~  421 (1113)
T KOG0644|consen  358 VTRSSDLSSIVVTARNDHRLCVWNLYTGQ---------------LLHNLMGHS-DEVYVLDVHPFNPRIAMSAGYDGSTI  421 (1113)
T ss_pred             EeccccccccceeeeeeeEeeeeecccch---------------hhhhhcccc-cceeeeeecCCCcHhhhhccCCCceE
Confidence            22222221111112222344556654442               112233444 77888888  3556678888999999


Q ss_pred             hhHHHHH
Q 008510          220 PYDAADK  226 (563)
Q Consensus       220 ~w~~a~~  226 (563)
                      +|++.+.
T Consensus       422 iwdi~eg  428 (1113)
T KOG0644|consen  422 IWDIWEG  428 (1113)
T ss_pred             eeecccC
Confidence            9998754

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.31  E-value=2.4e-11  Score=121.01  Aligned_cols=162  Identities=17%  Similarity=0.234  Sum_probs=115.1

Q ss_pred             CCCEEEEEECCCcEEEEcC-C---------CceeEEEecCCCcEEEEEEcCCC---eEEEEeCCCcEEEEc--CCceeEE
Q 008510            2 PGVGIISASHDCTIRLWAL-T---------GQVLMEMVGHTAIVYSIDSHASG---LIVSGSEDRFAKIWK--DGVCVQS   66 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~---------g~~i~~l~gH~~~V~~v~~~p~g---~l~s~s~D~tvriWd--~~~~~~~   66 (563)
                      ||.+|+|||+||.|++|.+ +         -++++.+.+|+-.|.++...+.|   +++|+|+|+++|+||  .+..+.+
T Consensus       134 dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlt  213 (476)
T KOG0646|consen  134 DGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLT  213 (476)
T ss_pred             CCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEE
Confidence            7899999999999999986 1         25788999999999999988765   899999999999999  8888889


Q ss_pred             EecCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceecee-eecc-cccccceeEEeeccCCceEEEeCCCCceeeec
Q 008510           67 IEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSL-ELEA-YASELSQYKLCRKKVGGLKLEDLPGLEALQIP  143 (563)
Q Consensus        67 l~h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~-~~~~-~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~  143 (563)
                      +..+..+.+|+..|-++ +..|+.+|.|.+.++......+.. ..+. +........+.+..++         ..+....
T Consensus       214 i~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~---------~~ITcLa  284 (476)
T KOG0646|consen  214 ITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENE---------SAITCLA  284 (476)
T ss_pred             EecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCC---------cceeEEE
Confidence            99999999999999888 999999999999887643311000 0011 1111111112222211         1222233


Q ss_pred             ccCCCeEEEEecCCCeEEEEEecccceEEE
Q 008510          144 GTNAGQTKVVREGDNGVAYSWDMKEQKWDK  173 (563)
Q Consensus       144 g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~  173 (563)
                      -+.||...+.++.| +.+++||...++..+
T Consensus       285 is~DgtlLlSGd~d-g~VcvWdi~S~Q~iR  313 (476)
T KOG0646|consen  285 ISTDGTLLLSGDED-GKVCVWDIYSKQCIR  313 (476)
T ss_pred             EecCccEEEeeCCC-CCEEEEecchHHHHH
Confidence            55677777766666 555688877765543

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.31  E-value=2.1e-11  Score=120.67  Aligned_cols=136  Identities=19%  Similarity=0.260  Sum_probs=101.4

Q ss_pred             CCCEEEEEECCCcEEEEcCC----CceeEE------------------EecCCCcEEEEEEcCCC--eEEEEeCCCcEEE
Q 008510            2 PGVGIISASHDCTIRLWALT----GQVLME------------------MVGHTAIVYSIDSHASG--LIVSGSEDRFAKI   57 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~~----g~~i~~------------------l~gH~~~V~~v~~~p~g--~l~s~s~D~tvri   57 (563)
                      .|+++|.|..|..|.|||++    -.+..+                  ..||++.|.+++|+..-  .|+|||.|.||++
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL  270 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence            37899999999999999982    112112                  23799999999998764  8999999999999


Q ss_pred             Ec--CCceeEEEe-cCCcEEEEEEccCC-c-EEEEeCCCcEEEEEcCCCceece-------eeecccccccceeEEeecc
Q 008510           58 WK--DGVCVQSIE-HPGCVWDAKFLENG-D-IVTACSDGVTRIWTVHSDKVADS-------LELEAYASELSQYKLCRKK  125 (563)
Q Consensus        58 Wd--~~~~~~~l~-h~~~V~~v~~~p~g-~-i~sgs~Dg~Irvwd~~~~~~~~~-------~~~~~~~~~v~~~~~~~~~  125 (563)
                      ||  +++|.+++. |.+.|.+++|+|.. . +++||.|++|+++|.|.......       .+.-.....-....+++..
T Consensus       271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~td  350 (463)
T KOG0270|consen  271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTD  350 (463)
T ss_pred             EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecC
Confidence            99  999999999 77799999999964 4 89999999999999995321110       0000111112244556677


Q ss_pred             CCceEEEeCCCC
Q 008510          126 VGGLKLEDLPGL  137 (563)
Q Consensus       126 ~~~i~~~d~~~~  137 (563)
                      +|.++-+|++..
T Consensus       351 dG~v~~~D~R~~  362 (463)
T KOG0270|consen  351 DGTVYYFDIRNP  362 (463)
T ss_pred             CceEEeeecCCC
Confidence            788888888755

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.30  E-value=6.2e-10  Score=111.45  Aligned_cols=167  Identities=15%  Similarity=0.182  Sum_probs=109.3

Q ss_pred             CCCEE-EEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eE-EEEeCCCcEEEEc--CCceeEEEecCCcEEE
Q 008510            2 PGVGI-ISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LI-VSGSEDRFAKIWK--DGVCVQSIEHPGCVWD   75 (563)
Q Consensus         2 ~g~~l-~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l-~s~s~D~tvriWd--~~~~~~~l~h~~~V~~   75 (563)
                      +|+.+ ++++.|+.|++||. +++.+..+..|.. +..++++|++ .+ ++++.|+++++||  +.+.+..+.+...+.+
T Consensus        41 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~  119 (300)
T TIGR03866        41 DGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEG  119 (300)
T ss_pred             CCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcce
Confidence            35554 67788999999999 7888777766554 4678999998 44 5566789999999  5667777765556889


Q ss_pred             EEEccCCc-EEEEeCCC-cEEEEEcCCCceeceeeecc----cc-cccceeE-EeeccCCceEEEeCCCCceeee-----
Q 008510           76 AKFLENGD-IVTACSDG-VTRIWTVHSDKVADSLELEA----YA-SELSQYK-LCRKKVGGLKLEDLPGLEALQI-----  142 (563)
Q Consensus        76 v~~~p~g~-i~sgs~Dg-~Irvwd~~~~~~~~~~~~~~----~~-~~v~~~~-~~~~~~~~i~~~d~~~~~~l~~-----  142 (563)
                      ++|+|+|. +++++.++ .+.+||.++++.........    .. ..-.... +....++.+.+||+.+.+.+..     
T Consensus       120 ~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~  199 (300)
T TIGR03866       120 MAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEI  199 (300)
T ss_pred             EEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecc
Confidence            99999999 67776664 57788998776433211110    00 0111223 3445678999999987654321     


Q ss_pred             -------------cccCCCeEEEEecCCCeEEEEEecccc
Q 008510          143 -------------PGTNAGQTKVVREGDNGVAYSWDMKEQ  169 (563)
Q Consensus       143 -------------~g~~dg~~~l~~~~~~~~~~~wd~~~~  169 (563)
                                   ..+++|...++...+...+.+||..++
T Consensus       200 ~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~  239 (300)
T TIGR03866       200 PGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY  239 (300)
T ss_pred             cccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence                         124556654444333344667776543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.30  E-value=3.7e-10  Score=102.62  Aligned_cols=216  Identities=16%  Similarity=0.155  Sum_probs=143.8

Q ss_pred             CCCEEEEEECCCcEEEEcCC---C---ceeEEEecCCCcEEEEEEcCC----C-eEEEEe-CCCcEEEEc--CCceeEEE
Q 008510            2 PGVGIISASHDCTIRLWALT---G---QVLMEMVGHTAIVYSIDSHAS----G-LIVSGS-EDRFAKIWK--DGVCVQSI   67 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~~---g---~~i~~l~gH~~~V~~v~~~p~----g-~l~s~s-~D~tvriWd--~~~~~~~l   67 (563)
                      .|..+++||+|.+|++-..+   .   ..-.++.-|.+.|..++|..+    | .++++| .|..|.+-|  .|+.++.+
T Consensus       100 ~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~  179 (350)
T KOG0641|consen  100 CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL  179 (350)
T ss_pred             ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee
Confidence            48899999999999998662   1   123467789999999999753    3 566654 345566666  88888888


Q ss_pred             e-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccc-------------cccceeEEeeccCCceEEE
Q 008510           68 E-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYA-------------SELSQYKLCRKKVGGLKLE  132 (563)
Q Consensus        68 ~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~-------------~~v~~~~~~~~~~~~i~~~  132 (563)
                      . |++.|.++ ++-+|- +++|+.|.+||+||++-..+.....-.-+.             +.......++..+....++
T Consensus       180 sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~ly  258 (350)
T KOG0641|consen  180 SGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLY  258 (350)
T ss_pred             cCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEE
Confidence            8 99988876 455666 999999999999999876544322111111             1122445567788899999


Q ss_pred             eCCCCceeeec-ccCCCeEEEEecCCCeE--EEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCe
Q 008510          133 DLPGLEALQIP-GTNAGQTKVVREGDNGV--AYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEP  208 (563)
Q Consensus       133 d~~~~~~l~~~-g~~dg~~~l~~~~~~~~--~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~  208 (563)
                      |++++..++.. .|......+-+++.-..  .+.||+..+.-+..|++...     -.....+.+.|.++.+.| +..-.
T Consensus       259 dirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~e-----l~~~vv~ehkdk~i~~rwh~~d~s  333 (350)
T KOG0641|consen  259 DIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHE-----LPIMVVAEHKDKAIQCRWHPQDFS  333 (350)
T ss_pred             EeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhc-----CceEEEEeccCceEEEEecCccce
Confidence            99999888776 44444444444443222  45666655444444443321     223455566688888888 54445


Q ss_pred             eeeecCCCCCChhHH
Q 008510          209 TRKLPYNRSDNPYDA  223 (563)
Q Consensus       209 ~~~~~~n~~~~~w~~  223 (563)
                      ..+.+.|++...|..
T Consensus       334 fisssadkt~tlwa~  348 (350)
T KOG0641|consen  334 FISSSADKTATLWAL  348 (350)
T ss_pred             eeeccCcceEEEecc
Confidence            777888888888753

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.28  E-value=2.4e-10  Score=109.03  Aligned_cols=164  Identities=19%  Similarity=0.217  Sum_probs=113.2

Q ss_pred             CEEEEEEC--CCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEE
Q 008510            4 VGIISASH--DCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAK   77 (563)
Q Consensus         4 ~~l~s~s~--DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~   77 (563)
                      ..++.+|+  |.+||.-++ +.+.++.+.||...|.+++.+|-+ .++|+|.|++||+||  ..+|...+...+ --.++
T Consensus        69 ~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~-~pi~A  147 (311)
T KOG1446|consen   69 NTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG-RPIAA  147 (311)
T ss_pred             ceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC-Cccee
Confidence            34555666  899999999 899999999999999999999988 999999999999999  577776665332 33468


Q ss_pred             EccCCc-EEEEeCCCcEEEEEcCCCceec--eeeec--------cccccc-ceeEEeeccCCceEEEeCCCCce------
Q 008510           78 FLENGD-IVTACSDGVTRIWTVHSDKVAD--SLELE--------AYASEL-SQYKLCRKKVGGLKLEDLPGLEA------  139 (563)
Q Consensus        78 ~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~--~~~~~--------~~~~~v-~~~~~~~~~~~~i~~~d~~~~~~------  139 (563)
                      |.|.|. +|+++....|++||+|+-..-+  ...+.        ..+-+. ....+.....+.+.+.|-..+..      
T Consensus       148 fDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~  227 (311)
T KOG1446|consen  148 FDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSG  227 (311)
T ss_pred             ECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEee
Confidence            999999 6777776799999999753211  11111        111111 12333334445555555433322      


Q ss_pred             --------eeecccCCCeEEEEecCCCeEEEEEecccc
Q 008510          140 --------LQIPGTNAGQTKVVREGDNGVAYSWDMKEQ  169 (563)
Q Consensus       140 --------l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~  169 (563)
                              +....++||++.+....| +.+++|+..++
T Consensus       228 ~~~~~~~~~~a~ftPds~Fvl~gs~d-g~i~vw~~~tg  264 (311)
T KOG1446|consen  228 YPNAGNLPLSATFTPDSKFVLSGSDD-GTIHVWNLETG  264 (311)
T ss_pred             ccCCCCcceeEEECCCCcEEEEecCC-CcEEEEEcCCC
Confidence                    233467888877776665 66778887665

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.28  E-value=1.1e-10  Score=127.18  Aligned_cols=100  Identities=22%  Similarity=0.354  Sum_probs=92.2

Q ss_pred             CCCEEEEEECCCcEEEEcCC--------C-----------ceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--
Q 008510            2 PGVGIISASHDCTIRLWALT--------G-----------QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--   59 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~~--------g-----------~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--   59 (563)
                      ||++||+||.|+.|.+|...        |           +++..+.||.+.|.+++|+|++ +++|+|-|++|.||+  
T Consensus        80 dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~  159 (942)
T KOG0973|consen   80 DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAK  159 (942)
T ss_pred             CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccc
Confidence            79999999999999999873        1           3778899999999999999999 999999999999999  


Q ss_pred             CCceeEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCC
Q 008510           60 DGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSD  101 (563)
Q Consensus        60 ~~~~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~  101 (563)
                      +.+++..+. |...|-.+.|.|-|+ |++-+.|++|+||.+.+.
T Consensus       160 tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw  203 (942)
T KOG0973|consen  160 TFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDW  203 (942)
T ss_pred             cceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccc
Confidence            788888888 999999999999999 999999999999997653

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.27  E-value=4.9e-10  Score=115.71  Aligned_cols=81  Identities=22%  Similarity=0.356  Sum_probs=63.4

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEecCCcEEEEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIEHPGCVWDAKF   78 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~h~~~V~~v~~   78 (563)
                      ||..++.+. |..+.+||. +|..+.+++||.+.|+||+|+.+| .|+||+.|..|.+|+ ..+-+-.+.|.+.|.|+.|
T Consensus        23 DGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsF  101 (1081)
T KOG1538|consen   23 DGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSF  101 (1081)
T ss_pred             CCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeec
Confidence            566666665 446899999 899999999999999999999999 999999999999999 4333333446666666666


Q ss_pred             ccCCc
Q 008510           79 LENGD   83 (563)
Q Consensus        79 ~p~g~   83 (563)
                      +|-..
T Consensus       102 NP~~h  106 (1081)
T KOG1538|consen  102 NPITH  106 (1081)
T ss_pred             CchHH
Confidence            55444

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.27  E-value=6.9e-11  Score=114.80  Aligned_cols=134  Identities=23%  Similarity=0.367  Sum_probs=103.9

Q ss_pred             CEEEEEECCCcEEEEcCC-----------------CceeEEEecCCCcEEEEEEcCC--CeEEEEeCCCcEEEEc--CCc
Q 008510            4 VGIISASHDCTIRLWALT-----------------GQVLMEMVGHTAIVYSIDSHAS--GLIVSGSEDRFAKIWK--DGV   62 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~~-----------------g~~i~~l~gH~~~V~~v~~~p~--g~l~s~s~D~tvriWd--~~~   62 (563)
                      .+.++-+..|.|.||++.                 .+++.++.+|...=|.++|+|-  |.++||.--+.|++|.  ++.
T Consensus       166 ~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~  245 (440)
T KOG0302|consen  166 VLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGS  245 (440)
T ss_pred             ceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCc
Confidence            467888889999999972                 1577889999998999999994  4788887788899999  433


Q ss_pred             ee---EEEe-cCCcEEEEEEccCCc--EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCc
Q 008510           63 CV---QSIE-HPGCVWDAKFLENGD--IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGG  128 (563)
Q Consensus        63 ~~---~~l~-h~~~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~  128 (563)
                      -.   +.+. |+.+|-.++|+|..+  |++||-||+|||||+|++..-.....++|...|+        .+..++..+|.
T Consensus       246 W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt  325 (440)
T KOG0302|consen  246 WKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGT  325 (440)
T ss_pred             eeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCce
Confidence            21   1222 999999999999755  8999999999999999985444344466665543        34567788899


Q ss_pred             eEEEeCCCC
Q 008510          129 LKLEDLPGL  137 (563)
Q Consensus       129 i~~~d~~~~  137 (563)
                      +++||++..
T Consensus       326 ~~iwDLR~~  334 (440)
T KOG0302|consen  326 LSIWDLRQF  334 (440)
T ss_pred             EEEEEhhhc
Confidence            999999744

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.27  E-value=4.9e-10  Score=112.18  Aligned_cols=168  Identities=15%  Similarity=0.120  Sum_probs=114.2

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eE-EEEeCCCcEEEEc--CCceeEEEecCCcEEEEE
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LI-VSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAK   77 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l-~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~   77 (563)
                      ++.|+|++.|++|++||. +++++.++.+|.. +.+++|+|+| .+ ++++.|+.|++||  +++.+..+.....+..++
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~   79 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFA   79 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEE
Confidence            467999999999999999 8889999887655 6789999998 54 6778899999999  667777666434467889


Q ss_pred             EccCCc-EE-EEeCCCcEEEEEcCCCceeceeeecc----ccccc-ceeEEeeccC-CceEEEeCCCCceee--------
Q 008510           78 FLENGD-IV-TACSDGVTRIWTVHSDKVADSLELEA----YASEL-SQYKLCRKKV-GGLKLEDLPGLEALQ--------  141 (563)
Q Consensus        78 ~~p~g~-i~-sgs~Dg~Irvwd~~~~~~~~~~~~~~----~~~~v-~~~~~~~~~~-~~i~~~d~~~~~~l~--------  141 (563)
                      |+|+|+ ++ +++.|+.|++||+++.+.........    ..-.. ....+....+ ..+..||..+.....        
T Consensus        80 ~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  159 (300)
T TIGR03866        80 LHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRP  159 (300)
T ss_pred             ECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCc
Confidence            999998 54 45568999999999876433222110    00011 1222233333 346667876554432        


Q ss_pred             --ecccCCCeEEEEecCCCeEEEEEecccceE
Q 008510          142 --IPGTNAGQTKVVREGDNGVAYSWDMKEQKW  171 (563)
Q Consensus       142 --~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w  171 (563)
                        ...+++|...++....++.+++||..++..
T Consensus       160 ~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~  191 (300)
T TIGR03866       160 RFAEFTADGKELWVSSEIGGTVSVIDVATRKV  191 (300)
T ss_pred             cEEEECCCCCEEEEEcCCCCEEEEEEcCccee
Confidence              124567777666655456788899876543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.26  E-value=5.5e-11  Score=122.41  Aligned_cols=207  Identities=18%  Similarity=0.188  Sum_probs=135.2

Q ss_pred             CEEEEEECCCcEEEEcCC-C--c----eeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEE---EecC
Q 008510            4 VGIISASHDCTIRLWALT-G--Q----VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQS---IEHP   70 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~~-g--~----~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~---l~h~   70 (563)
                      ..|+.+..||.|.++|.. .  +    .++....|...|.++.|.|.. .|++++.|.++|+||  ..++...   +.|.
T Consensus        65 HiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~  144 (720)
T KOG0321|consen   65 HILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHT  144 (720)
T ss_pred             ceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccc
Confidence            568899999999999982 1  1    245667899999999999944 899999999999999  5555544   3499


Q ss_pred             CcEEEEEEccCCc--EEEEeCCCcEEEEEcCCCcee------------------ceeee-------cccccccce-----
Q 008510           71 GCVWDAKFLENGD--IVTACSDGVTRIWTVHSDKVA------------------DSLEL-------EAYASELSQ-----  118 (563)
Q Consensus        71 ~~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~------------------~~~~~-------~~~~~~v~~-----  118 (563)
                      +.|.+++|.|...  +++|+.||.|.|||.+-...-                  +...+       .+....+..     
T Consensus       145 ~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv  224 (720)
T KOG0321|consen  145 GSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVV  224 (720)
T ss_pred             cccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEE
Confidence            9999999999765  899999999999998743210                  00000       000011111     


Q ss_pred             ------eEE-eeccCCceEEEeCCCCceeee---------ccc-------------CCCeEEEEecCCCeEEEEEecccc
Q 008510          119 ------YKL-CRKKVGGLKLEDLPGLEALQI---------PGT-------------NAGQTKVVREGDNGVAYSWDMKEQ  169 (563)
Q Consensus       119 ------~~~-~~~~~~~i~~~d~~~~~~l~~---------~g~-------------~dg~~~l~~~~~~~~~~~wd~~~~  169 (563)
                            ..+ ++..|+.|++||++.......         ..+             ..|.+.+..+.| ..+|.|++..-
T Consensus       225 ~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD-~sIy~ynm~s~  303 (720)
T KOG0321|consen  225 LFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD-NSIYFYNMRSL  303 (720)
T ss_pred             EEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC-CcEEEEecccc
Confidence                  112 344589999999976522111         111             223444444443 55677776443


Q ss_pred             eEEEeCcEeeCCCCCCCceeecCcccC--cEEEEEcCCCCeeeeecCCCCCChhHHH
Q 008510          170 KWDKLGEVVDGPDDGMNRPILDGIQYD--YVFDVDIGDGEPTRKLPYNRSDNPYDAA  224 (563)
Q Consensus       170 ~w~~~g~v~~~~~~~~~~~~~~g~~~d--~v~~vd~~dg~~~~~~~~n~~~~~w~~a  224 (563)
                      .-.             -+..|.|+..+  ||-+.--+||..++++..|...-+|.+.
T Consensus       304 s~s-------------P~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs  347 (720)
T KOG0321|consen  304 SIS-------------PVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVS  347 (720)
T ss_pred             CcC-------------chhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeec
Confidence            211             33445555433  3334444888889999988888888774

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.26  E-value=1.1e-10  Score=110.03  Aligned_cols=196  Identities=16%  Similarity=0.186  Sum_probs=127.2

Q ss_pred             CCCEEEEEECCCcEEEEcC-CC------------cee---EEEecCCCcEEEEEEcCC--CeEEEEeCCCcEEEEc--CC
Q 008510            2 PGVGIISASHDCTIRLWAL-TG------------QVL---MEMVGHTAIVYSIDSHAS--GLIVSGSEDRFAKIWK--DG   61 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g------------~~i---~~l~gH~~~V~~v~~~p~--g~l~s~s~D~tvriWd--~~   61 (563)
                      .|++++||+.||.|-+||+ ..            .|+   ..-.+|...|.++-|-|-  |.|.|+|.|.++||||  +-
T Consensus        55 egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTl  134 (397)
T KOG4283|consen   55 EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTL  134 (397)
T ss_pred             cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccc
Confidence            4789999999999999998 21            121   012478889999999984  4999999999999999  66


Q ss_pred             ceeEEEecCCcEEEEEEccCC--c--EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCC
Q 008510           62 VCVQSIEHPGCVWDAKFLENG--D--IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGL  137 (563)
Q Consensus        62 ~~~~~l~h~~~V~~v~~~p~g--~--i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~  137 (563)
                      +....|..++.|++-+++|-.  .  ||+|..|-.||+.|+.+|...  ..+.+|.+.|-.+.            =-|..
T Consensus       135 Q~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s--H~LsGHr~~vlaV~------------Wsp~~  200 (397)
T KOG4283|consen  135 QEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS--HTLSGHRDGVLAVE------------WSPSS  200 (397)
T ss_pred             eeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcce--eeeccccCceEEEE------------eccCc
Confidence            777788899999999999943  2  788999999999999999733  34444444332211            11222


Q ss_pred             ceeeecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCcee--ecCcccCcEEEEEc-CCCCeeeeecC
Q 008510          138 EALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPI--LDGIQYDYVFDVDI-GDGEPTRKLPY  214 (563)
Q Consensus       138 ~~l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~--~~g~~~d~v~~vd~-~dg~~~~~~~~  214 (563)
                      +.+..+|+.||.+++|+-..-         .+.+.    +.+-... .....  -.-.+|+.|+...+ .||...++..-
T Consensus       201 e~vLatgsaDg~irlWDiRra---------sgcf~----~lD~hn~-k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt  266 (397)
T KOG4283|consen  201 EWVLATGSADGAIRLWDIRRA---------SGCFR----VLDQHNT-KRPPILKTNTAHYGKVNGLAWTSDARYLASCGT  266 (397)
T ss_pred             eeEEEecCCCceEEEEEeecc---------cceeE----EeecccC-ccCccccccccccceeeeeeecccchhhhhccC
Confidence            233333333333333322110         01111    1110000 00001  11234677999999 89999999999


Q ss_pred             CCCCChhHHHH
Q 008510          215 NRSDNPYDAAD  225 (563)
Q Consensus       215 n~~~~~w~~a~  225 (563)
                      |..++.|+-..
T Consensus       267 d~r~r~wn~~~  277 (397)
T KOG4283|consen  267 DDRIRVWNMES  277 (397)
T ss_pred             ccceEEeeccc
Confidence            99999998753

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.26  E-value=2.7e-11  Score=121.31  Aligned_cols=133  Identities=17%  Similarity=0.258  Sum_probs=103.6

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAK   77 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~   77 (563)
                      |.+..++|..||.|+|||+ +...++.|.||++.+.|+.++++| .+.|||-|.+||.||  .+..++.......|.++.
T Consensus       520 DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg  599 (705)
T KOG0639|consen  520 DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLG  599 (705)
T ss_pred             ccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecc
Confidence            4577889999999999999 888999999999999999999999 999999999999999  666555555566899999


Q ss_pred             EccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccccc--------ceeEEeeccCCceEEEeCCCC
Q 008510           78 FLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL--------SQYKLCRKKVGGLKLEDLPGL  137 (563)
Q Consensus        78 ~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v--------~~~~~~~~~~~~i~~~d~~~~  137 (563)
                      ++|+++ ++.|...+.+.|.........   .+..++.-|        ....++...|+-+..|..|-+
T Consensus       600 ~cP~~dWlavGMens~vevlh~skp~ky---qlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG  665 (705)
T KOG0639|consen  600 YCPTGDWLAVGMENSNVEVLHTSKPEKY---QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG  665 (705)
T ss_pred             cCCCccceeeecccCcEEEEecCCccce---eecccccEEEEEEecccCceeeecCchhhhhhccCccc
Confidence            999999 999999999988887655422   222222222        223334455666666766644

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.25  E-value=1.5e-10  Score=117.85  Aligned_cols=100  Identities=26%  Similarity=0.491  Sum_probs=85.3

Q ss_pred             CEEEEEECCCcEEEEcC-C--------CceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--------CC----
Q 008510            4 VGIISASHDCTIRLWAL-T--------GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--------DG----   61 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~-~--------g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--------~~----   61 (563)
                      ..|++|+.||++++|++ .        -+++.+|.+|.++|.|+++.+++ .+.|||-||+|+.|+        +.    
T Consensus       307 p~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~  386 (577)
T KOG0642|consen  307 PVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPS  386 (577)
T ss_pred             CeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcc
Confidence            46899999999999998 1        25789999999999999999999 999999999999994        11    


Q ss_pred             ceeEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCce
Q 008510           62 VCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKV  103 (563)
Q Consensus        62 ~~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~  103 (563)
                      ....++. |.+.||.+++++..+ +++++.||++|.|.......
T Consensus       387 vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~  430 (577)
T KOG0642|consen  387 VLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP  430 (577)
T ss_pred             hhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc
Confidence            1223444 999999999999776 99999999999999877653

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.25  E-value=2.8e-10  Score=107.73  Aligned_cols=98  Identities=23%  Similarity=0.372  Sum_probs=81.1

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC---eEEEEeCCCcEEEEc--CCceeEEEecCCcEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG---LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWD   75 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g---~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~   75 (563)
                      ||..+++|+.|+.+++||+ ++ .+..+..|.++|.++.|.+..   .++|||+|+|+|.||  ....+.++..|..|++
T Consensus        83 dgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa  161 (347)
T KOG0647|consen   83 DGSKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYA  161 (347)
T ss_pred             CCceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeee
Confidence            6788999999999999999 66 556788899999999998764   699999999999999  6677888888888888


Q ss_pred             EEEccCCcEEEEeCCCcEEEEEcCCC
Q 008510           76 AKFLENGDIVTACSDGVTRIWTVHSD  101 (563)
Q Consensus        76 v~~~p~g~i~sgs~Dg~Irvwd~~~~  101 (563)
                      +..... .++.+..+..|.+|+++.+
T Consensus       162 ~Dv~~p-m~vVata~r~i~vynL~n~  186 (347)
T KOG0647|consen  162 ADVLYP-MAVVATAERHIAVYNLENP  186 (347)
T ss_pred             hhccCc-eeEEEecCCcEEEEEcCCC
Confidence            766422 2677778888888888654

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.23  E-value=2.1e-10  Score=104.12  Aligned_cols=100  Identities=24%  Similarity=0.412  Sum_probs=87.8

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEec--C-----CCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-c
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVG--H-----TAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-H   69 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~g--H-----~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h   69 (563)
                      +|-.|++||.|.|||.||+ -..|+.++..  |     .+.|.+|++.|.| .+++|-+|.++.+||  .++.+|.+. |
T Consensus       193 n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~ph  272 (350)
T KOG0641|consen  193 NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPH  272 (350)
T ss_pred             cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCC
Confidence            4668999999999999999 5677777642  2     3679999999999 899999999999999  778899988 9


Q ss_pred             CCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCC
Q 008510           70 PGCVWDAKFLENGD-IVTACSDGVTRIWTVHSD  101 (563)
Q Consensus        70 ~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~  101 (563)
                      ...|.||.|+|... +++|+.|..|++-|+...
T Consensus       273 sadir~vrfsp~a~yllt~syd~~ikltdlqgd  305 (350)
T KOG0641|consen  273 SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD  305 (350)
T ss_pred             ccceeEEEeCCCceEEEEecccceEEEeecccc
Confidence            99999999999887 999999999999998754

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.23  E-value=1.2e-10  Score=110.89  Aligned_cols=189  Identities=16%  Similarity=0.197  Sum_probs=125.3

Q ss_pred             eEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--C-----CceeEEEecCCcEEEEEEccCCc--EEEEeCCCcEE
Q 008510           25 LMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--D-----GVCVQSIEHPGCVWDAKFLENGD--IVTACSDGVTR   94 (563)
Q Consensus        25 i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~-----~~~~~~l~h~~~V~~v~~~p~g~--i~sgs~Dg~Ir   94 (563)
                      +.+++||...|++++|+.|| .|+|++.||+||+|+  +     .+|++.--.-+.-+.|.|.||-+  +++.-...+++
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~  158 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC  158 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence            45689999999999999999 999999999999999  1     23332211223567889999987  45566677899


Q ss_pred             EEEcCCCc---ee----ceeeec---cccc--------ccceeEEeeccCCceEEEeCCCCceeeec-----------cc
Q 008510           95 IWTVHSDK---VA----DSLELE---AYAS--------ELSQYKLCRKKVGGLKLEDLPGLEALQIP-----------GT  145 (563)
Q Consensus        95 vwd~~~~~---~~----~~~~~~---~~~~--------~v~~~~~~~~~~~~i~~~d~~~~~~l~~~-----------g~  145 (563)
                      +|.....+   ..    +...++   .+.-        ....++.+++.+.+|.+|++.++ .++..           -+
T Consensus       159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq-~L~~idtnq~~n~~aavS  237 (420)
T KOG2096|consen  159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQ-LLQSIDTNQSSNYDAAVS  237 (420)
T ss_pred             EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCc-eeeeeccccccccceeeC
Confidence            99875332   10    011010   0110        12356677888999999999954 33322           45


Q ss_pred             CCCeEEEEecCCCeEEEEEecccceEEEe----CcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCCh
Q 008510          146 NAGQTKVVREGDNGVAYSWDMKEQKWDKL----GEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNP  220 (563)
Q Consensus       146 ~dg~~~l~~~~~~~~~~~wd~~~~~w~~~----g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~  220 (563)
                      ++|.+..+..        +-.....|+.+    |++-..    .+...+.||. .-|....| ++...+.+.+-|++.++
T Consensus       238 P~GRFia~~g--------FTpDVkVwE~~f~kdG~fqev----~rvf~LkGH~-saV~~~aFsn~S~r~vtvSkDG~wri  304 (420)
T KOG2096|consen  238 PDGRFIAVSG--------FTPDVKVWEPIFTKDGTFQEV----KRVFSLKGHQ-SAVLAAAFSNSSTRAVTVSKDGKWRI  304 (420)
T ss_pred             CCCcEEEEec--------CCCCceEEEEEeccCcchhhh----hhhheeccch-hheeeeeeCCCcceeEEEecCCcEEE
Confidence            6666655443        22233445443    322221    1445578887 66888899 88889999999999999


Q ss_pred             hHHHHHH
Q 008510          221 YDAADKW  227 (563)
Q Consensus       221 w~~a~~f  227 (563)
                      |+..=+|
T Consensus       305 wdtdVrY  311 (420)
T KOG2096|consen  305 WDTDVRY  311 (420)
T ss_pred             eeccceE
Confidence            9986544

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.22  E-value=2.1e-10  Score=109.19  Aligned_cols=99  Identities=31%  Similarity=0.491  Sum_probs=86.5

Q ss_pred             CCEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-----CCce---eE--EEe-cC
Q 008510            3 GVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-----DGVC---VQ--SIE-HP   70 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-----~~~~---~~--~l~-h~   70 (563)
                      +.+|+|||.|.+|.+|++.|+.+.++......-+..+++|+| .+++++.---|++|.     +|..   .+  .+. |.
T Consensus       199 ~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~  278 (420)
T KOG2096|consen  199 AKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQ  278 (420)
T ss_pred             ceEEEEecCCCcEEEEecCCceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccch
Confidence            578999999999999999999999998888888999999999 888999999999998     3321   22  333 89


Q ss_pred             CcEEEEEEccCCc-EEEEeCCCcEEEEEcCCC
Q 008510           71 GCVWDAKFLENGD-IVTACSDGVTRIWTVHSD  101 (563)
Q Consensus        71 ~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~  101 (563)
                      ..|...+|+++.+ +++.+.||++|+||.+-.
T Consensus       279 saV~~~aFsn~S~r~vtvSkDG~wriwdtdVr  310 (420)
T KOG2096|consen  279 SAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVR  310 (420)
T ss_pred             hheeeeeeCCCcceeEEEecCCcEEEeeccce
Confidence            9999999999988 999999999999998754

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.21  E-value=5.7e-10  Score=106.27  Aligned_cols=132  Identities=19%  Similarity=0.247  Sum_probs=100.1

Q ss_pred             EEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEEEcc
Q 008510            5 GIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKFLE   80 (563)
Q Consensus         5 ~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~~~p   80 (563)
                      .|++|+.||.|.+|+. .-++++++++|.+.|+.++++|.| ...|.|.|+.+|.||  +|+.-..+.....-..|.|+|
T Consensus        99 hLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~  178 (362)
T KOG0294|consen   99 HLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSP  178 (362)
T ss_pred             heeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcC
Confidence            7899999999999999 889999999999999999999999 778899999999999  776655555344445599999


Q ss_pred             CCc-EEEEeCCCcEEEEEcCCCceeceeeec----ccccccceeEEeeccCCceEEEeCCCC
Q 008510           81 NGD-IVTACSDGVTRIWTVHSDKVADSLELE----AYASELSQYKLCRKKVGGLKLEDLPGL  137 (563)
Q Consensus        81 ~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~i~~~d~~~~  137 (563)
                      .|+ ++.++.+ .|-+|.+.+.......+..    .....-....+.+..++.|++||....
T Consensus       179 ~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~  239 (362)
T KOG0294|consen  179 QGDHFVVSGRN-KIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSD  239 (362)
T ss_pred             CCCEEEEEecc-EEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCC
Confidence            999 7776654 6889988776532211111    111112345567777889999998754

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.19  E-value=4.9e-10  Score=120.00  Aligned_cols=102  Identities=19%  Similarity=0.345  Sum_probs=88.4

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA   76 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v   76 (563)
                      .+.+|++|+.+++|.+|.. +++.-..+...+-++.+++|+.+| .++.||.|-.|++-+  +......+. |.++|.++
T Consensus        65 ~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l  144 (933)
T KOG1274|consen   65 YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQL  144 (933)
T ss_pred             cccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeee
Confidence            3568999999999999999 666555566667889999999999 999999999999999  555555666 99999999


Q ss_pred             EEccCCc-EEEEeCCCcEEEEEcCCCce
Q 008510           77 KFLENGD-IVTACSDGVTRIWTVHSDKV  103 (563)
Q Consensus        77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~  103 (563)
                      .|+|+|. +|+.+-||.|++||+.++..
T Consensus       145 ~~~p~~~fLAvss~dG~v~iw~~~~~~~  172 (933)
T KOG1274|consen  145 SYDPKGNFLAVSSCDGKVQIWDLQDGIL  172 (933)
T ss_pred             eEcCCCCEEEEEecCceEEEEEcccchh
Confidence            9999999 89999999999999998863

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.16  E-value=7.8e-11  Score=128.92  Aligned_cols=204  Identities=19%  Similarity=0.231  Sum_probs=137.2

Q ss_pred             EEEEEECCCcEEEEcC-C---C---ceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc-CC-ceeEEE---ecC
Q 008510            5 GIISASHDCTIRLWAL-T---G---QVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK-DG-VCVQSI---EHP   70 (563)
Q Consensus         5 ~l~s~s~DgtIrlWd~-~---g---~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd-~~-~~~~~l---~h~   70 (563)
                      .|+.|..||.|-+||. .   +   ..+.++..|++.|..+.|++.+  .++||+.||.|.||| .. +.-.+.   ..+
T Consensus        82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~  161 (1049)
T KOG0307|consen   82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPP  161 (1049)
T ss_pred             eeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCc
Confidence            5899999999999998 2   2   3567888999999999999975  899999999999999 22 211112   255


Q ss_pred             CcEEEEEEccCCc--EEEEeCCCcEEEEEcCCCceeceee----------ecccccccceeEEeeccC--CceEEEeCCC
Q 008510           71 GCVWDAKFLENGD--IVTACSDGVTRIWTVHSDKVADSLE----------LEAYASELSQYKLCRKKV--GGLKLEDLPG  136 (563)
Q Consensus        71 ~~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~~----------~~~~~~~v~~~~~~~~~~--~~i~~~d~~~  136 (563)
                      ..|.+++|+..-.  +++++.+|.+.|||+|..+..-...          +.=|-+.-.+...+...+  -.|.+||++-
T Consensus       162 ~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~  241 (1049)
T KOG0307|consen  162 SEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRF  241 (1049)
T ss_pred             ccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccc
Confidence            6899999987533  7999999999999999875321111          111111122333333333  5899999864


Q ss_pred             Cceeee--cccCCCeEE----------EEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-
Q 008510          137 LEALQI--PGTNAGQTK----------VVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-  203 (563)
Q Consensus       137 ~~~l~~--~g~~dg~~~----------l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-  203 (563)
                      ...-..  .+|.-|.+.          ++.++.++.+++|+..++      ++++.-.          ..-+++|+|.| 
T Consensus       242 assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg------Evl~~~p----------~~~nW~fdv~w~  305 (1049)
T KOG0307|consen  242 ASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG------EVLGELP----------AQGNWCFDVQWC  305 (1049)
T ss_pred             cCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc------eEeeecC----------CCCcceeeeeec
Confidence            432211  255555443          334444466778887664      5555321          12388999999 


Q ss_pred             -CCCCeeeeecCCCCCChhHHH
Q 008510          204 -GDGEPTRKLPYNRSDNPYDAA  224 (563)
Q Consensus       204 -~dg~~~~~~~~n~~~~~w~~a  224 (563)
                       .+-..+...++|+.+.+|.+.
T Consensus       306 pr~P~~~A~asfdgkI~I~sl~  327 (1049)
T KOG0307|consen  306 PRNPSVMAAASFDGKISIYSLQ  327 (1049)
T ss_pred             CCCcchhhhheeccceeeeeee
Confidence             344457888899999888864

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.15  E-value=3.3e-09  Score=97.69  Aligned_cols=139  Identities=14%  Similarity=0.155  Sum_probs=89.9

Q ss_pred             CCEEEEEECCCcEEEEcC----CC-------ceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc------CCceeE
Q 008510            3 GVGIISASHDCTIRLWAL----TG-------QVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK------DGVCVQ   65 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~----~g-------~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd------~~~~~~   65 (563)
                      +++|+.|+++|+|-+.++    ++       ..+-...+|.++||.++|..+ .+++|+ ||.|+-|.      +..+..
T Consensus        22 ~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~-~Lls~g-dG~V~gw~W~E~~es~~~K~   99 (325)
T KOG0649|consen   22 KQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD-FLLSGG-DGLVYGWEWNEEEESLATKR   99 (325)
T ss_pred             ceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh-heeecc-CceEEEeeehhhhhhccchh
Confidence            578888999999988876    11       244556789999999888844 666665 58888776      111111


Q ss_pred             EEe-----cC-----CcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceece-----eeeccccc-ccceeEEeeccCCc
Q 008510           66 SIE-----HP-----GCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADS-----LELEAYAS-ELSQYKLCRKKVGG  128 (563)
Q Consensus        66 ~l~-----h~-----~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~-----~~~~~~~~-~v~~~~~~~~~~~~  128 (563)
                      .+.     |.     -.|.++...|... +..++.|+.++-||+.+|+....     .-++.... .-+..++++.+||+
T Consensus       100 lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGt  179 (325)
T KOG0649|consen  100 LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGT  179 (325)
T ss_pred             hhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCcc
Confidence            111     22     1477777777555 66666788888888888875432     22332222 34466778888888


Q ss_pred             eEEEeCCCCceeeec
Q 008510          129 LKLEDLPGLEALQIP  143 (563)
Q Consensus       129 i~~~d~~~~~~l~~~  143 (563)
                      +++||.++.......
T Consensus       180 vRvWd~kt~k~v~~i  194 (325)
T KOG0649|consen  180 VRVWDTKTQKHVSMI  194 (325)
T ss_pred             EEEEeccccceeEEe
Confidence            888888777655543

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.13  E-value=4.2e-10  Score=105.93  Aligned_cols=98  Identities=26%  Similarity=0.470  Sum_probs=82.9

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEE-ecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc---CCceeEEEe-cCCcE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEM-VGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK---DGVCVQSIE-HPGCV   73 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l-~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd---~~~~~~~l~-h~~~V   73 (563)
                      +|+.+++.+ |++++-||+ +-.+...+ ..|...|.++.|+|+.  .++|||.||.|||||   +...++++. |...|
T Consensus       183 dgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWv  261 (370)
T KOG1007|consen  183 DGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWV  261 (370)
T ss_pred             ccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEE
Confidence            467777764 899999999 55444444 4698999999999986  899999999999999   567788887 99999


Q ss_pred             EEEEEccCCc--EEEEeCCCcEEEEEcCC
Q 008510           74 WDAKFLENGD--IVTACSDGVTRIWTVHS  100 (563)
Q Consensus        74 ~~v~~~p~g~--i~sgs~Dg~Irvwd~~~  100 (563)
                      |+|.|+|.-+  |++||+|..|.+|-..+
T Consensus       262 W~VRfn~~hdqLiLs~~SDs~V~Lsca~s  290 (370)
T KOG1007|consen  262 WAVRFNPEHDQLILSGGSDSAVNLSCASS  290 (370)
T ss_pred             EEEEecCccceEEEecCCCceeEEEeccc
Confidence            9999999766  89999999999998654

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.07  E-value=6.3e-09  Score=104.50  Aligned_cols=163  Identities=15%  Similarity=0.179  Sum_probs=123.2

Q ss_pred             CEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecC-C-cEEEEE
Q 008510            4 VGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHP-G-CVWDAK   77 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~-~-~V~~v~   77 (563)
                      .++++||..+.|+|||+ ...+.+.+++|++.|.+|.++-.. ++++++..|-|.|..  ++....+|.|+ + .|+-+.
T Consensus        92 ~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~  171 (673)
T KOG4378|consen   92 LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLR  171 (673)
T ss_pred             eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEee
Confidence            57899999999999999 667888899999999999998776 999999999999999  66666778866 3 788999


Q ss_pred             EccCCc--EEEEeCCCcEEEEEcCCCceeceeeeccccc---------ccceeEEeeccCCceEEEeCCCCcee------
Q 008510           78 FLENGD--IVTACSDGVTRIWTVHSDKVADSLELEAYAS---------ELSQYKLCRKKVGGLKLEDLPGLEAL------  140 (563)
Q Consensus        78 ~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~i~~~d~~~~~~l------  140 (563)
                      |+|..+  +.+++.+|.|.+||+...+..... .+.|..         .-.....+.+.|..|.++|.+.....      
T Consensus       172 ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~-~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~  250 (673)
T KOG4378|consen  172 YSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA-SEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYS  250 (673)
T ss_pred             cccccceeeEeeccCCeEEEEeccCCCcccch-hhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeec
Confidence            999887  788999999999999876532211 112222         22244556678899999999755321      


Q ss_pred             ----eecccCCCeEEEEecCCCeEEEEEeccc
Q 008510          141 ----QIPGTNAGQTKVVREGDNGVAYSWDMKE  168 (563)
Q Consensus       141 ----~~~g~~dg~~~l~~~~~~~~~~~wd~~~  168 (563)
                          .+.+..+|.+...+... +.++.||+..
T Consensus       251 ~Plstvaf~~~G~~L~aG~s~-G~~i~YD~R~  281 (673)
T KOG4378|consen  251 HPLSTVAFSECGTYLCAGNSK-GELIAYDMRS  281 (673)
T ss_pred             CCcceeeecCCceEEEeecCC-ceEEEEeccc
Confidence                12266778777766655 6667788643

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.06  E-value=2.9e-09  Score=114.18  Aligned_cols=135  Identities=17%  Similarity=0.251  Sum_probs=108.6

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe---------
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE---------   68 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~---------   68 (563)
                      +|+.++.||.|-.|++-+. ++...+.+.||.++|.++.++|++ .+|+.+-||.|+||+  ++.+..++.         
T Consensus       107 ~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~  186 (933)
T KOG1274|consen  107 SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFI  186 (933)
T ss_pred             CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcccccc
Confidence            5789999999999999999 888889999999999999999999 999999999999999  777766664         


Q ss_pred             cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccc--------ccceeEEeeccCCceEEEeCCC
Q 008510           69 HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYAS--------ELSQYKLCRKKVGGLKLEDLPG  136 (563)
Q Consensus        69 h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~~i~~~d~~~  136 (563)
                      ....+..++|+|+|. ++.-+.|+.|++|+..++..........+..        ....++.++..+|.|.+||..+
T Consensus       187 ~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  187 LSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             ccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            133578899999855 9999999999999999886433222211111        1235556677889999999985

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.06  E-value=1.7e-08  Score=101.79  Aligned_cols=202  Identities=18%  Similarity=0.239  Sum_probs=135.0

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc-CCce-----------------
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK-DGVC-----------------   63 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd-~~~~-----------------   63 (563)
                      +.-++||..+|+|.||+. ..+..+....|.+.|++++...+|.++||+.|+.|..|| ..+.                 
T Consensus       257 ngdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~  336 (626)
T KOG2106|consen  257 NGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVA  336 (626)
T ss_pred             CCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEe
Confidence            445889999999999999 666777777999999999999999888999999999999 2110                 


Q ss_pred             -------------------------eEEEecCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceec--eeeecccccc
Q 008510           64 -------------------------VQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVAD--SLELEAYASE  115 (563)
Q Consensus        64 -------------------------~~~l~h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~--~~~~~~~~~~  115 (563)
                                               +.++.|.+..|.++.+|+.+ +++++.|+.+++|+-..-....  ..+.....-+
T Consensus       337 e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fh  416 (626)
T KOG2106|consen  337 EGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIEDPAECADFH  416 (626)
T ss_pred             cCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCCceeEEEEecCceeEeecc
Confidence                                     11122777899999999887 9999999999999922111111  1111122222


Q ss_pred             cceeEEeeccCCceEEEeCCCC---------ceee-ecccCCCeEEEEecCCCeEEEEEe--cccceEEEeCcEeeCCCC
Q 008510          116 LSQYKLCRKKVGGLKLEDLPGL---------EALQ-IPGTNAGQTKVVREGDNGVAYSWD--MKEQKWDKLGEVVDGPDD  183 (563)
Q Consensus       116 v~~~~~~~~~~~~i~~~d~~~~---------~~l~-~~g~~dg~~~l~~~~~~~~~~~wd--~~~~~w~~~g~v~~~~~~  183 (563)
                      +....+.+...|---+.|..+.         +.+. +..+++|.+..+.+.|+ .+|+|.  ...+...+.+...     
T Consensus       417 psg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~-~iyiy~Vs~~g~~y~r~~k~~-----  490 (626)
T KOG2106|consen  417 PSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDN-HIYIYRVSANGRKYSRVGKCS-----  490 (626)
T ss_pred             CcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCC-eEEEEEECCCCcEEEEeeeec-----
Confidence            3333444444444444444433         2232 23788898888888874 445554  3333333333222     


Q ss_pred             CCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChh
Q 008510          184 GMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPY  221 (563)
Q Consensus       184 ~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w  221 (563)
                              |   .+|...|+ .|++.+.+-+-|-.+--|
T Consensus       491 --------g---s~ithLDwS~Ds~~~~~~S~d~eiLyW  518 (626)
T KOG2106|consen  491 --------G---SPITHLDWSSDSQFLVSNSGDYEILYW  518 (626)
T ss_pred             --------C---ceeEEeeecCCCceEEeccCceEEEEE
Confidence                    2   46888888 888888888877777777

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.06  E-value=5.9e-09  Score=99.16  Aligned_cols=201  Identities=15%  Similarity=0.149  Sum_probs=119.0

Q ss_pred             CCEEEEEECCCcEEEEcC-----C--C---ceeEEEecCCCcEEEEEEcCC--C-eEEEEeCCCcEEEEc--CC------
Q 008510            3 GVGIISASHDCTIRLWAL-----T--G---QVLMEMVGHTAIVYSIDSHAS--G-LIVSGSEDRFAKIWK--DG------   61 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-----~--g---~~i~~l~gH~~~V~~v~~~p~--g-~l~s~s~D~tvriWd--~~------   61 (563)
                      |+.+|+||.|++++||.-     +  |   ....++....+.|++|.|.|.  | .+++++.||++|||+  +.      
T Consensus        73 GqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W  152 (361)
T KOG2445|consen   73 GQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQW  152 (361)
T ss_pred             cceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccc
Confidence            788999999999999975     1  2   134567788899999999996  6 899999999999998  21      


Q ss_pred             ceeEEEe--------cCCcEEEEEEccCC---c-EEEEeCC-----CcEEEEEcCCC--ceeceeeecccccccceeEEe
Q 008510           62 VCVQSIE--------HPGCVWDAKFLENG---D-IVTACSD-----GVTRIWTVHSD--KVADSLELEAYASELSQYKLC  122 (563)
Q Consensus        62 ~~~~~l~--------h~~~V~~v~~~p~g---~-i~sgs~D-----g~Irvwd~~~~--~~~~~~~~~~~~~~v~~~~~~  122 (563)
                      ...+.++        +.....||.|+|.-   . ||.|+.+     +.++||.....  +.....++..+.+.+....++
T Consensus       153 ~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wA  232 (361)
T KOG2445|consen  153 TLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWA  232 (361)
T ss_pred             hhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeec
Confidence            1122222        44478899999742   2 6777655     47888876543  445555666666655544432


Q ss_pred             eccCCceEEEeCCCCceeeecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCC----CceeecCcccCcE
Q 008510          123 RKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGM----NRPILDGIQYDYV  198 (563)
Q Consensus       123 ~~~~~~i~~~d~~~~~~l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~----~~~~~~g~~~d~v  198 (563)
                      .......         .+...+++|| +.++.-...... +.         -.++.....-..    ....+.+|. ..|
T Consensus       233 Pn~Gr~y---------~~lAvA~kDg-v~I~~v~~~~s~-i~---------~ee~~~~~~~~~l~v~~vs~~~~H~-~~V  291 (361)
T KOG2445|consen  233 PNIGRSY---------HLLAVATKDG-VRIFKVKVARSA-IE---------EEEVLAPDLMTDLPVEKVSELDDHN-GEV  291 (361)
T ss_pred             cccCCce---------eeEEEeecCc-EEEEEEeeccch-hh---------hhcccCCCCccccceEEeeeccCCC-Cce
Confidence            2111000         0112233343 333222110000 00         001111110000    112255665 668


Q ss_pred             EEEEc-CCCCeeeeecCCCCCChhHHH
Q 008510          199 FDVDI-GDGEPTRKLPYNRSDNPYDAA  224 (563)
Q Consensus       199 ~~vd~-~dg~~~~~~~~n~~~~~w~~a  224 (563)
                      +.+.+ -.|..+.+.+.|+.++.|...
T Consensus       292 Wrv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  292 WRVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             EEEEEeeeeeEEeecCCCceeeehhhh
Confidence            88888 577778888888999999874

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.04  E-value=4.6e-08  Score=101.99  Aligned_cols=139  Identities=17%  Similarity=0.228  Sum_probs=109.0

Q ss_pred             CCEEEEEECCCcEEEEcC--CCceeEEEecCC-CcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510            3 GVGIISASHDCTIRLWAL--TGQVLMEMVGHT-AIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA   76 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~--~g~~i~~l~gH~-~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v   76 (563)
                      .+.+|.+-.||+|-+|++  .--+..++.||. ..|.+++|++.++|.|.+.+|+|.-||  +++.+..+. ..+.||++
T Consensus        37 S~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsi  116 (691)
T KOG2048|consen   37 SNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSI  116 (691)
T ss_pred             CCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEE
Confidence            456888899999999999  345667788877 579999999777999999999999999  888887777 45599999


Q ss_pred             EEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccc-------cc-ceeEEeeccCCceEEEeCCCCceee
Q 008510           77 KFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYAS-------EL-SQYKLCRKKVGGLKLEDLPGLEALQ  141 (563)
Q Consensus        77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~-------~v-~~~~~~~~~~~~i~~~d~~~~~~l~  141 (563)
                      +.+|.++ ++.||.||.+..++..++.......+..-..       .. ....+.+..||-|++||...+..+.
T Consensus       117 ai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~  190 (691)
T KOG2048|consen  117 AINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLH  190 (691)
T ss_pred             EeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEE
Confidence            9999888 8999999999999998887544333221111       11 2335667788889999998776655

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.03  E-value=1.8e-09  Score=112.55  Aligned_cols=207  Identities=15%  Similarity=0.189  Sum_probs=145.0

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCC--C--eEEEEeCCCcEEEEc---CCceeEEEe-cCCc
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHAS--G--LIVSGSEDRFAKIWK---DGVCVQSIE-HPGC   72 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~--g--~l~s~s~D~tvriWd---~~~~~~~l~-h~~~   72 (563)
                      +|.+||+|..-|++|+|++ +-+....++.|.+.|.|+.++..  +  .++++|.|+-|.|+|   ....++++. |...
T Consensus       470 ~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSss  549 (1080)
T KOG1408|consen  470 DGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSS  549 (1080)
T ss_pred             CcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccc
Confidence            5889999999999999999 66777788999999999999753  2  799999999999999   566788888 9999


Q ss_pred             EEEEEEccCC--c-EEEEeCCCcEEEEEcC---CCcee-------ceeeeccc-ccccceeEEeeccCCceEEEeCCCCc
Q 008510           73 VWDAKFLENG--D-IVTACSDGVTRIWTVH---SDKVA-------DSLELEAY-ASELSQYKLCRKKVGGLKLEDLPGLE  138 (563)
Q Consensus        73 V~~v~~~p~g--~-i~sgs~Dg~Irvwd~~---~~~~~-------~~~~~~~~-~~~v~~~~~~~~~~~~i~~~d~~~~~  138 (563)
                      |++|.|--+|  . ++++|.|..|.+-...   +++..       ....+... .+......+.+.+|.+|+++++..+.
T Consensus       550 ITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgK  629 (1080)
T KOG1408|consen  550 ITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGK  629 (1080)
T ss_pred             eeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccc
Confidence            9999998877  3 8999999876543222   12211       11122211 23345777888999999999998665


Q ss_pred             eeeec-ccC-------------CCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-
Q 008510          139 ALQIP-GTN-------------AGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-  203 (563)
Q Consensus       139 ~l~~~-g~~-------------dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-  203 (563)
                      ..... |+.             .|.+......|+.. +++|..++.      .+.         ...||. ..|..+.| 
T Consensus       630 q~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl-~~~Df~sgE------cvA---------~m~GHs-E~VTG~kF~  692 (1080)
T KOG1408|consen  630 QVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTL-CFVDFVSGE------CVA---------QMTGHS-EAVTGVKFL  692 (1080)
T ss_pred             eeeeecccccCCCceEEEEECCCccEEEEeecCCce-EEEEeccch------hhh---------hhcCcc-hheeeeeec
Confidence            54433 332             23333333333222 233333331      111         234555 67888999 


Q ss_pred             CCCCeeeeecCCCCCChhHHHH
Q 008510          204 GDGEPTRKLPYNRSDNPYDAAD  225 (563)
Q Consensus       204 ~dg~~~~~~~~n~~~~~w~~a~  225 (563)
                      +|-+-+.+.+.|+-+-+|.+-.
T Consensus       693 nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  693 NDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             ccchhheeecCCceEEEEECch
Confidence            8889999999999999998753

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.03  E-value=1.4e-09  Score=106.97  Aligned_cols=101  Identities=24%  Similarity=0.498  Sum_probs=85.0

Q ss_pred             CEEEEEECCCcEEEEcC-C----C-----ceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-C--------C--
Q 008510            4 VGIISASHDCTIRLWAL-T----G-----QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-D--------G--   61 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~-~----g-----~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~--------~--   61 (563)
                      +.++||+.|..||+|-+ .    +     +.+..+.+|+..|++|.|+|+| .++||+.+|.|.+|- .        .  
T Consensus        27 ~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~  106 (434)
T KOG1009|consen   27 NKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEA  106 (434)
T ss_pred             cceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchh
Confidence            47999999999999987 1    2     2345678999999999999999 999999999999998 3        1  


Q ss_pred             ---c----eeEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCcee
Q 008510           62 ---V----CVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVA  104 (563)
Q Consensus        62 ---~----~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~  104 (563)
                         +    ....+. |...|..++|+|++. +++|+.|+.+++||+..|...
T Consensus       107 ~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~  158 (434)
T KOG1009|consen  107 DLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLL  158 (434)
T ss_pred             hhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeE
Confidence               1    122233 888999999999999 899999999999999999744

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.03  E-value=2.2e-09  Score=108.59  Aligned_cols=80  Identities=19%  Similarity=0.296  Sum_probs=65.4

Q ss_pred             CEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe-cCCcEEEEEEcc
Q 008510            4 VGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE-HPGCVWDAKFLE   80 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~-h~~~V~~v~~~p   80 (563)
                      +.|+.|++||.+.+-+-.|+..+.+..|.+.|.|-.|+|+| -++|+|+||.|++|. +|-.-.++. ...+|+|++|.|
T Consensus        76 d~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p  155 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAP  155 (737)
T ss_pred             ceEEEEcCCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECC
Confidence            57899999999999998999999999999999999999999 899999999999999 554333333 223666666666


Q ss_pred             CCc
Q 008510           81 NGD   83 (563)
Q Consensus        81 ~g~   83 (563)
                      +..
T Consensus       156 ~S~  158 (737)
T KOG1524|consen  156 NSN  158 (737)
T ss_pred             CCC
Confidence            655

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.02  E-value=6.1e-09  Score=100.40  Aligned_cols=134  Identities=19%  Similarity=0.205  Sum_probs=99.8

Q ss_pred             CEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCC-C--eEEEEeCCCcEEEEc--CC--ceeEEEe-cC-CcE
Q 008510            4 VGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHAS-G--LIVSGSEDRFAKIWK--DG--VCVQSIE-HP-GCV   73 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~-g--~l~s~s~D~tvriWd--~~--~~~~~l~-h~-~~V   73 (563)
                      ..+|++-..|+||+||. +|+.+..+++|...+..++|..+ +  .+.+|+.||+||+||  ..  ......+ ++ .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            35777777899999999 89999999999999999999774 3  799999999999999  22  2223333 55 477


Q ss_pred             EEEEEccCCc-EEEEe----CCCcEEEEEcCCCceeceeeecccccccc---------eeEEeeccCCceEEEeCCCC
Q 008510           74 WDAKFLENGD-IVTAC----SDGVTRIWTVHSDKVADSLELEAYASELS---------QYKLCRKKVGGLKLEDLPGL  137 (563)
Q Consensus        74 ~~v~~~p~g~-i~sgs----~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~---------~~~~~~~~~~~i~~~d~~~~  137 (563)
                      .|++..-++. +++|.    .|-.|.+||+|..++.-..-...|.+.|.         ...++++.||-+.++|+...
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d  198 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD  198 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence            7877765666 66664    46789999999987532223344555544         44567888899999998654

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=98.99  E-value=1e-08  Score=98.37  Aligned_cols=93  Identities=26%  Similarity=0.440  Sum_probs=73.9

Q ss_pred             CEEEEEECCCcEEEEcC-CCceeEEE---ecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCc-------e-------
Q 008510            4 VGIISASHDCTIRLWAL-TGQVLMEM---VGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGV-------C-------   63 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~-~g~~i~~l---~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~-------~-------   63 (563)
                      ++++|||.|-+||+|++ +..|+..+   .||.+.|.+++|+++| +++|||.|.++++|+ ..+       +       
T Consensus       149 qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~  228 (385)
T KOG1034|consen  149 QLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPN  228 (385)
T ss_pred             cEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCC
Confidence            58999999999999999 88888775   5799999999999999 999999999999999 310       0       


Q ss_pred             ------------eEEE---e-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEc
Q 008510           64 ------------VQSI---E-HPGCVWDAKFLENGD-IVTACSDGVTRIWTV   98 (563)
Q Consensus        64 ------------~~~l---~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~   98 (563)
                                  +-.+   . |...|-||.|..  + +++=|-++.|..|-.
T Consensus       229 ~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g--d~ilSkscenaI~~w~p  278 (385)
T KOG1034|consen  229 KTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG--DFILSKSCENAIVCWKP  278 (385)
T ss_pred             CccCcCCccccccccccccccccchHHHHHHHh--hheeecccCceEEEEec
Confidence                        0111   1 666777777754  5 677777788888866

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=98.98  E-value=3.1e-09  Score=110.70  Aligned_cols=100  Identities=24%  Similarity=0.423  Sum_probs=84.4

Q ss_pred             CCCEEEEEECC-----CcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CC--c---eeEEEe
Q 008510            2 PGVGIISASHD-----CTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DG--V---CVQSIE   68 (563)
Q Consensus         2 ~g~~l~s~s~D-----gtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~--~---~~~~l~   68 (563)
                      +|+.+||++..     ..|++|+. +-..+..+.+|+-.|+.++|+||| +|++.|.|+++.+|. ..  .   ......
T Consensus       536 ~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k  615 (764)
T KOG1063|consen  536 TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLK  615 (764)
T ss_pred             CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhcccc
Confidence            37788888764     45899998 666677899999999999999999 999999999999998 11  1   111233


Q ss_pred             -cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCC
Q 008510           69 -HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSD  101 (563)
Q Consensus        69 -h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~  101 (563)
                       |+..||++.|+|++. ++|+|.|.+|+||.....
T Consensus       616 ~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  616 AHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             ccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence             999999999999999 999999999999998877

>KOG4328 consensus WD40 protein [Function unknown]

Probab=98.98  E-value=9.8e-09  Score=102.38  Aligned_cols=96  Identities=21%  Similarity=0.362  Sum_probs=80.6

Q ss_pred             CEEEEEECCCcEEEEcC--CCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc----CCc---eeEEEecCCc
Q 008510            4 VGIISASHDCTIRLWAL--TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK----DGV---CVQSIEHPGC   72 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~--~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd----~~~---~~~~l~h~~~   72 (563)
                      ..++.+.+=|...+||.  .|.....+.-|.-.|.+|+++|..  .++|||.|++++|||    .++   .+.++.|...
T Consensus       292 ~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hrrs  371 (498)
T KOG4328|consen  292 RSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRS  371 (498)
T ss_pred             ccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccce
Confidence            34566777778899998  555566677799999999999976  899999999999999    222   3667779999


Q ss_pred             EEEEEEccCCc-EEEEeCCCcEEEEEcC
Q 008510           73 VWDAKFLENGD-IVTACSDGVTRIWTVH   99 (563)
Q Consensus        73 V~~v~~~p~g~-i~sgs~Dg~Irvwd~~   99 (563)
                      |.+..|+|.|- ++|.|.|..|||||..
T Consensus       372 V~sAyFSPs~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  372 VNSAYFSPSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             eeeeEEcCCCCceEeeccCCceEEeecc
Confidence            99999999754 9999999999999985

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=98.98  E-value=1e-08  Score=100.56  Aligned_cols=98  Identities=28%  Similarity=0.488  Sum_probs=82.5

Q ss_pred             CEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCC-cEEEEE
Q 008510            4 VGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPG-CVWDAK   77 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~-~V~~v~   77 (563)
                      +.|+|+|.|.+|.+|++ +|+.+-++. |.+.|++++|+.+| .++|++.|+.|||||  .++.+..-. |.+ .-..+-
T Consensus       145 NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Rai  223 (472)
T KOG0303|consen  145 NVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAI  223 (472)
T ss_pred             hhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeE
Confidence            56889999999999999 899888887 99999999999999 999999999999999  777776664 776 566677


Q ss_pred             EccCCcEEEEe----CCCcEEEEEcCCCc
Q 008510           78 FLENGDIVTAC----SDGVTRIWTVHSDK  102 (563)
Q Consensus        78 ~~p~g~i~sgs----~Dg~Irvwd~~~~~  102 (563)
                      |..+|.++|.+    ++..+-+||...-.
T Consensus       224 fl~~g~i~tTGfsr~seRq~aLwdp~nl~  252 (472)
T KOG0303|consen  224 FLASGKIFTTGFSRMSERQIALWDPNNLE  252 (472)
T ss_pred             EeccCceeeeccccccccceeccCccccc
Confidence            88899965543    57789999976543

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=98.98  E-value=1.1e-09  Score=119.01  Aligned_cols=100  Identities=27%  Similarity=0.487  Sum_probs=89.9

Q ss_pred             CCCCEEEEEECCCcEEEEcC-CCceeE-EEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc-CCceeEEEe-cCC-cEEE
Q 008510            1 MPGVGIISASHDCTIRLWAL-TGQVLM-EMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK-DGVCVQSIE-HPG-CVWD   75 (563)
Q Consensus         1 ~~g~~l~s~s~DgtIrlWd~-~g~~i~-~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd-~~~~~~~l~-h~~-~V~~   75 (563)
                      +||++++|+|.|.++|+|++ +++... +.-||+..|+.++|+|+ .++|+|+|.++|+|+ .+..++++. |.+ .+|.
T Consensus       185 ~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~  263 (967)
T KOG0974|consen  185 LDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWK  263 (967)
T ss_pred             cCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-eeEEeccceEEEEEecccceehhhhhhhhcceeE
Confidence            48999999999999999999 666554 77899999999999999 999999999999999 888888887 766 9999


Q ss_pred             EEEccCCc-EEEEeCCCcEEEEEcCCC
Q 008510           76 AKFLENGD-IVTACSDGVTRIWTVHSD  101 (563)
Q Consensus        76 v~~~p~g~-i~sgs~Dg~Irvwd~~~~  101 (563)
                      ++..++.. ++|++.||.+++||+...
T Consensus       264 ~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  264 IAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             EEEcCCceEEEeeccCcchhhhhhhcc
Confidence            99998877 899999999999998653

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=98.97  E-value=8.6e-09  Score=97.22  Aligned_cols=204  Identities=21%  Similarity=0.263  Sum_probs=121.9

Q ss_pred             CCEEEEEECCCcEEEEcC-CCce-eEEE-----ecCCCcEEEEEEcC--CC-eEEEEeCCCcEEEEc--CCceeEEEe--
Q 008510            3 GVGIISASHDCTIRLWAL-TGQV-LMEM-----VGHTAIVYSIDSHA--SG-LIVSGSEDRFAKIWK--DGVCVQSIE--   68 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~-i~~l-----~gH~~~V~~v~~~p--~g-~l~s~s~D~tvriWd--~~~~~~~l~--   68 (563)
                      ++.+++-. |..|-+|++ ++.. +..+     .+|+...++-+|+|  +| .+++ ..|++++.||  +.++...|.  
T Consensus       135 s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~~~sI~dA  212 (370)
T KOG1007|consen  135 SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKKNNSIEDA  212 (370)
T ss_pred             CCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCcEEEEEccchhhhcchhhh
Confidence            44555544 889999999 4432 4433     24666778889999  45 5555 4589999999  667777777  


Q ss_pred             cCCcEEEEEEccCCc--EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceeeecccC
Q 008510           69 HPGCVWDAKFLENGD--IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTN  146 (563)
Q Consensus        69 h~~~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~  146 (563)
                      |...|..+.|+|+-.  +++|+.||.||+||.|.-+ .+..++..|...+..+.+.            +....+...|++
T Consensus       213 Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk-~pv~el~~HsHWvW~VRfn------------~~hdqLiLs~~S  279 (370)
T KOG1007|consen  213 HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK-FPVQELPGHSHWVWAVRFN------------PEHDQLILSGGS  279 (370)
T ss_pred             hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC-ccccccCCCceEEEEEEec------------CccceEEEecCC
Confidence            888999999999976  8999999999999999876 4455565555443222110            122334444555


Q ss_pred             CCeEEEEecCCCeE--EEEEecccceEE--EeCcEeeCCCCCCCceeecCcccCcEEEEEcCCCCe--eeeecCCCCCCh
Q 008510          147 AGQTKVVREGDNGV--AYSWDMKEQKWD--KLGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGEP--TRKLPYNRSDNP  220 (563)
Q Consensus       147 dg~~~l~~~~~~~~--~~~wd~~~~~w~--~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~~dg~~--~~~~~~n~~~~~  220 (563)
                      |..+.+.+...-..  ....+..+....  ...+-+. +-..+....|+-|+ |-||.+++....|  .++++||+.+-+
T Consensus       280 Ds~V~Lsca~svSSE~qi~~~~dese~e~~dseer~k-pL~dg~l~tydehE-DSVY~~aWSsadPWiFASLSYDGRviI  357 (370)
T KOG1007|consen  280 DSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVK-PLQDGQLETYDEHE-DSVYALAWSSADPWIFASLSYDGRVII  357 (370)
T ss_pred             CceeEEEeccccccccccccccccccCcchhhHHhcc-cccccccccccccc-cceEEEeeccCCCeeEEEeccCceEEe
Confidence            55554444322100  000100000000  0000000 00111334577777 8899999955554  789999997644


Q ss_pred             hHH
Q 008510          221 YDA  223 (563)
Q Consensus       221 w~~  223 (563)
                      -.|
T Consensus       358 s~V  360 (370)
T KOG1007|consen  358 SSV  360 (370)
T ss_pred             ecC
Confidence            443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.97  E-value=1.5e-09  Score=110.04  Aligned_cols=113  Identities=20%  Similarity=0.364  Sum_probs=86.1

Q ss_pred             eEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe--cCCcEEEEEEccC--Cc-EEEEeCCCcEEEE
Q 008510           25 LMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE--HPGCVWDAKFLEN--GD-IVTACSDGVTRIW   96 (563)
Q Consensus        25 i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~--h~~~V~~v~~~p~--g~-i~sgs~Dg~Irvw   96 (563)
                      .+++.||++.|.|+.|+.+| .++|||.|-.+.|||  ..+.++.+.  |.+.|.|+.|.|.  .+ +++|+.|..|++|
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf  122 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF  122 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence            45788999999999999999 999999999999999  888899998  9999999999993  33 7999999999999


Q ss_pred             EcCCCcee-----ceeeec---ccccccc---------eeEEeeccCCceEEEeCCCC
Q 008510           97 TVHSDKVA-----DSLELE---AYASELS---------QYKLCRKKVGGLKLEDLPGL  137 (563)
Q Consensus        97 d~~~~~~~-----~~~~~~---~~~~~v~---------~~~~~~~~~~~i~~~d~~~~  137 (563)
                      |+...+.-     ..++..   .|...|.         ....++++||+|+.+|++.+
T Consensus       123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREp  180 (758)
T KOG1310|consen  123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREP  180 (758)
T ss_pred             ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCC
Confidence            99853210     011111   1222221         33456677788888887754

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=98.95  E-value=1.1e-08  Score=105.42  Aligned_cols=111  Identities=22%  Similarity=0.316  Sum_probs=83.7

Q ss_pred             CCCEEEEEECCCcEEEEcCC-Cc--ee---EEEecCC-CcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCceeEEEe-c
Q 008510            2 PGVGIISASHDCTIRLWALT-GQ--VL---MEMVGHT-AIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIE-H   69 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~~-g~--~i---~~l~gH~-~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~~~l~-h   69 (563)
                      ++..+++||.|..||||.+. |-  .+   ....||. -.|.++.|+|..  .+++ +..|+|+|||  +++.+..+. |
T Consensus        91 ~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s-~a~g~v~i~D~stqk~~~el~~h  169 (1012)
T KOG1445|consen   91 ADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILAS-GAHGSVYITDISTQKTAVELSGH  169 (1012)
T ss_pred             chhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEe-ccCceEEEEEcccCceeecccCC
Confidence            35679999999999999993 32  11   1223555 467899999964  5555 5578999999  777777777 9


Q ss_pred             CCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccc
Q 008510           70 PGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYAS  114 (563)
Q Consensus        70 ~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~  114 (563)
                      ++.|.+..|+.||. +++.|.|..|||||.|..- ......++|.+
T Consensus       170 ~d~vQSa~WseDG~llatscKdkqirifDPRa~~-~piQ~te~H~~  214 (1012)
T KOG1445|consen  170 TDKVQSADWSEDGKLLATSCKDKQIRIFDPRASM-EPIQTTEGHGG  214 (1012)
T ss_pred             chhhhccccccCCceEeeecCCcceEEeCCccCC-Ccccccccccc
Confidence            99999999999999 8999999999999998654 22223344543

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=98.95  E-value=5.1e-08  Score=103.81  Aligned_cols=189  Identities=17%  Similarity=0.244  Sum_probs=130.9

Q ss_pred             CEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecC-CcEEEEEE
Q 008510            4 VGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHP-GCVWDAKF   78 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~-~~V~~v~~   78 (563)
                      +.++.|+.+|.+.+|++ +++.+.++.+|.+.|+++.-+|-= .++.|.++|+|.|++  .++.+.+++|. +.|.+++|
T Consensus       173 NKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSF  252 (910)
T KOG1539|consen  173 NKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSF  252 (910)
T ss_pred             eeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEe
Confidence            35788999999999999 999999999999999999988864 899999999999999  88999999986 79999999


Q ss_pred             ccCCc--EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceeeecccCCCeEEEEecC
Q 008510           79 LENGD--IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREG  156 (563)
Q Consensus        79 ~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg~~~l~~~~  156 (563)
                      ..||.  +++|+..|.+-+||++..+.... ....|...+....            -+++..++           +....
T Consensus       253 rtDG~p~las~~~~G~m~~wDLe~kkl~~v-~~nah~~sv~~~~------------fl~~epVl-----------~ta~~  308 (910)
T KOG1539|consen  253 RTDGNPLLASGRSNGDMAFWDLEKKKLINV-TRNAHYGSVTGAT------------FLPGEPVL-----------VTAGA  308 (910)
T ss_pred             ccCCCeeEEeccCCceEEEEEcCCCeeeee-eeccccCCcccce------------ecCCCceE-----------eeccC
Confidence            99998  79999999999999998874321 1112222222211            12222222           22223


Q ss_pred             CCeE-EEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc--CCCCeeeeecCCCCCChhHHHHHHHHh
Q 008510          157 DNGV-AYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI--GDGEPTRKLPYNRSDNPYDAADKWLLK  230 (563)
Q Consensus       157 ~~~~-~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~--~dg~~~~~~~~n~~~~~w~~a~~f~~~  230 (563)
                      |+.. .+++|...|.    .+         ..+...||. .--..+.+  ..|..+++...|.+-+.+.+-+.++.+
T Consensus       309 DnSlk~~vfD~~dg~----pR---------~LR~R~GHs-~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~  371 (910)
T KOG1539|consen  309 DNSLKVWVFDSGDGV----PR---------LLRSRGGHS-APPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQ  371 (910)
T ss_pred             CCceeEEEeeCCCCc----ch---------heeeccCCC-CCchheeeeccCcEEEEecccCcchhhhhhhHHHHhH
Confidence            3222 3333422221    01         111223333 33455555  577788888888888888887666543

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=98.95  E-value=1.4e-08  Score=105.83  Aligned_cols=186  Identities=19%  Similarity=0.323  Sum_probs=116.8

Q ss_pred             CCE-EEEEECCCcEEEEcC---CCceeEEEecCCCcEEEEEEcCCC----eEEEEeCCCcEEEEc---CC----------
Q 008510            3 GVG-IISASHDCTIRLWAL---TGQVLMEMVGHTAIVYSIDSHASG----LIVSGSEDRFAKIWK---DG----------   61 (563)
Q Consensus         3 g~~-l~s~s~DgtIrlWd~---~g~~i~~l~gH~~~V~~v~~~p~g----~l~s~s~D~tvriWd---~~----------   61 (563)
                      +.+ ++.|+.+..|.++.-   +.+.+..+.||++.|.+++|...+    .++|||.|+.||||.   .+          
T Consensus       158 ~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~  237 (764)
T KOG1063|consen  158 KTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDS  237 (764)
T ss_pred             CcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccc
Confidence            444 455556677777775   235678899999999999997532    799999999999998   21          


Q ss_pred             ----------ce---eE------E-E-ecCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCc--eeceeeecccccccc
Q 008510           62 ----------VC---VQ------S-I-EHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDK--VADSLELEAYASELS  117 (563)
Q Consensus        62 ----------~~---~~------~-l-~h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~--~~~~~~~~~~~~~v~  117 (563)
                                .+   ++      + + .|.+.|+++-|+|.+. |++++.|.++-+|...+..  ......+....+.  
T Consensus       238 ~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~--  315 (764)
T KOG1063|consen  238 LTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGS--  315 (764)
T ss_pred             cccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeeccccc--
Confidence                      11   11      1 1 2889999999999996 9999999999999877543  2111111111000  


Q ss_pred             eeEEeeccCCceEEEeCCCCceeeecccCCCeEEEEecCCCeEEEEEe-cccceEEEeCcEeeCCCCCCCceeecCcccC
Q 008510          118 QYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGVAYSWD-MKEQKWDKLGEVVDGPDDGMNRPILDGIQYD  196 (563)
Q Consensus       118 ~~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg~~~l~~~~~~~~~~~wd-~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d  196 (563)
                                ..-+|.        ...++++...+..+.. +--+.|. .....|...             ..+.||. +
T Consensus       316 ----------a~GF~g--------~lw~~n~~~ii~~g~~-Gg~hlWkt~d~~~w~~~-------------~~iSGH~-~  362 (764)
T KOG1063|consen  316 ----------AGGFWG--------GLWSPNSNVIIAHGRT-GGFHLWKTKDKTFWTQE-------------PVISGHV-D  362 (764)
T ss_pred             ----------ccceee--------EEEcCCCCEEEEeccc-CcEEEEeccCccceeec-------------ccccccc-c
Confidence                      000111        1122222222222211 2234444 223445433             2345565 6


Q ss_pred             cEEEEEc-CCCCeeeeecCCCCCChhHH
Q 008510          197 YVFDVDI-GDGEPTRKLPYNRSDNPYDA  223 (563)
Q Consensus       197 ~v~~vd~-~dg~~~~~~~~n~~~~~w~~  223 (563)
                      -|.+|++ +.|+.+++.+-|.+.+++..
T Consensus       363 ~V~dv~W~psGeflLsvs~DQTTRlFa~  390 (764)
T KOG1063|consen  363 GVKDVDWDPSGEFLLSVSLDQTTRLFAR  390 (764)
T ss_pred             cceeeeecCCCCEEEEeccccceeeecc
Confidence            7999999 99999999999999876653

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=98.94  E-value=6e-09  Score=105.55  Aligned_cols=158  Identities=11%  Similarity=0.180  Sum_probs=116.1

Q ss_pred             CCCEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc-CCceeEEEecCCcEEEEEE
Q 008510            2 PGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK-DGVCVQSIEHPGCVWDAKF   78 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd-~~~~~~~l~h~~~V~~v~~   78 (563)
                      ||..++|+|.||.|++|+-+|-...++......|+|++|.|++  .+.+.+..-.|+-.. ..+.++--.|.+-|.++.|
T Consensus       115 dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W  194 (737)
T KOG1524|consen  115 DGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSW  194 (737)
T ss_pred             CCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeec
Confidence            6888999999999999999998888888888999999999987  455545444455444 5566554459999999999


Q ss_pred             ccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEee------ccCCceEEEeCCCCceeeecccCCCeEE
Q 008510           79 LENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCR------KKVGGLKLEDLPGLEALQIPGTNAGQTK  151 (563)
Q Consensus        79 ~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~~i~~~d~~~~~~l~~~g~~dg~~~  151 (563)
                      +|..+ |++||.|-..+|||--..-   ...-..++..+.+..+..      .+-...++...+.+++.....+.||.-.
T Consensus       195 ~~~s~lI~sgGED~kfKvWD~~G~~---Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R~~~p~~GSifnlsWS~DGTQ~  271 (737)
T KOG1524|consen  195 STQSNIIASGGEDFRFKIWDAQGAN---LFTSAAEEYAITSVAFNPEKDYLLWSYNTARFSSPRVGSIFNLSWSADGTQA  271 (737)
T ss_pred             CccccceeecCCceeEEeecccCcc---cccCChhccceeeeeeccccceeeeeeeeeeecCCCccceEEEEEcCCCcee
Confidence            99988 8999999999999976432   112223333333333332      2335666666677777888899999888


Q ss_pred             EEecCCCeEEE
Q 008510          152 VVREGDNGVAY  162 (563)
Q Consensus       152 l~~~~~~~~~~  162 (563)
                      .+.++.+.+++
T Consensus       272 a~gt~~G~v~~  282 (737)
T KOG1524|consen  272 TCGTSTGQLIV  282 (737)
T ss_pred             eccccCceEEE
Confidence            88877766643

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=98.93  E-value=4.4e-08  Score=95.78  Aligned_cols=136  Identities=11%  Similarity=0.116  Sum_probs=101.1

Q ss_pred             CCCEEEEEECCCcEEEEcCC-------CceeEEEec-CCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecC
Q 008510            2 PGVGIISASHDCTIRLWALT-------GQVLMEMVG-HTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHP   70 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~~-------g~~i~~l~g-H~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~   70 (563)
                      +|++|++||.|..+++|.++       .+++..... |.+.|+|++|...+ .+.+|+.+++|...|  +.+.+..+.|.
T Consensus        67 N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~  146 (609)
T KOG4227|consen   67 NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANEN  146 (609)
T ss_pred             CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeeccc
Confidence            47899999999999999972       255554433 55899999999877 899999999999999  77778888765


Q ss_pred             C---cEEEEEEccCCc-EEEEeCCCcEEEEEcCCCc-eeceeeecc---------cccccceeEEeeccCCceEEEeCCC
Q 008510           71 G---CVWDAKFLENGD-IVTACSDGVTRIWTVHSDK-VADSLELEA---------YASELSQYKLCRKKVGGLKLEDLPG  136 (563)
Q Consensus        71 ~---~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~-~~~~~~~~~---------~~~~v~~~~~~~~~~~~i~~~d~~~  136 (563)
                      .   .|+.+..+|..+ +++.+.++.|.+||.+... .........         |....-..++.....+.+.+||.+.
T Consensus       147 ~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~  226 (609)
T KOG4227|consen  147 NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRM  226 (609)
T ss_pred             CcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeecc
Confidence            4   899999999766 8999999999999998765 111111111         1111223444566667888888764


Q ss_pred             C
Q 008510          137 L  137 (563)
Q Consensus       137 ~  137 (563)
                      +
T Consensus       227 ~  227 (609)
T KOG4227|consen  227 Q  227 (609)
T ss_pred             c
Confidence            4

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=98.92  E-value=8.7e-09  Score=107.54  Aligned_cols=150  Identities=19%  Similarity=0.196  Sum_probs=111.1

Q ss_pred             CEEEEEECCCcEEEEcC--CCceeEEEecCCCcEEEEEEcCCC---eEEEEeCCCcEEEEc---CCceeEEEe-----cC
Q 008510            4 VGIISASHDCTIRLWAL--TGQVLMEMVGHTAIVYSIDSHASG---LIVSGSEDRFAKIWK---DGVCVQSIE-----HP   70 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~--~g~~i~~l~gH~~~V~~v~~~p~g---~l~s~s~D~tvriWd---~~~~~~~l~-----h~   70 (563)
                      +.||++|.|.-|+++|+  +-.++.++.+|.+.|++|.|.-.|   .+++||.|+.+.+-.   .+.-....+     ..
T Consensus       517 kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~k  596 (1080)
T KOG1408|consen  517 KLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSK  596 (1080)
T ss_pred             HhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecccccccccc
Confidence            57899999999999999  678899999999999999998776   799999999877544   111111111     22


Q ss_pred             CcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeee-cccccc--------cceeEEeeccCCceEEEeCCCCcee
Q 008510           71 GCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLEL-EAYASE--------LSQYKLCRKKVGGLKLEDLPGLEAL  140 (563)
Q Consensus        71 ~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~-~~~~~~--------v~~~~~~~~~~~~i~~~d~~~~~~l  140 (563)
                      ..++.|+..|+.. ++++|.|..|||||+.++++...+.- +.+++.        -.-+..+...|.++.++|+-.++.+
T Consensus       597 tTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcv  676 (1080)
T KOG1408|consen  597 TTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECV  676 (1080)
T ss_pred             ceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhh
Confidence            4799999999988 99999999999999999985533211 111111        2234456678899999999888876


Q ss_pred             eec-ccCCCeEEEE
Q 008510          141 QIP-GTNAGQTKVV  153 (563)
Q Consensus       141 ~~~-g~~dg~~~l~  153 (563)
                      ... ||.+-.+-+.
T Consensus       677 A~m~GHsE~VTG~k  690 (1080)
T KOG1408|consen  677 AQMTGHSEAVTGVK  690 (1080)
T ss_pred             hhhcCcchheeeee
Confidence            543 7766544333

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=98.91  E-value=1.5e-07  Score=95.15  Aligned_cols=221  Identities=16%  Similarity=0.226  Sum_probs=129.8

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCcee---EEEecCC-CcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEE-ecCCcE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVL---MEMVGHT-AIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSI-EHPGCV   73 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i---~~l~gH~-~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l-~h~~~V   73 (563)
                      +.+.+++|+ -+.+..|+. .+...   ..+++++ .+|.|++|.++|.++||..+|++.||+  ..+..+.. .|++.|
T Consensus       212 d~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv  290 (626)
T KOG2106|consen  212 DPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGV  290 (626)
T ss_pred             CCcEEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCce
Confidence            456788887 578999999 44333   3455544 689999999999999999999999999  33333333 499999


Q ss_pred             EEEEEccCCcEEEEeCCCcEEEEEcCCCceeceeeecccccccce------eEEeeccCCceEEEeCCCCceeeecccCC
Q 008510           74 WDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQ------YKLCRKKVGGLKLEDLPGLEALQIPGTNA  147 (563)
Q Consensus        74 ~~v~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~------~~~~~~~~~~i~~~d~~~~~~l~~~g~~d  147 (563)
                      .+++...+|.+++|+.|..|-.||-. -+.....++..-...+..      -.+.+...+.|-.-.+...-.+...||.|
T Consensus       291 ~~L~~lr~GtllSGgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~d  369 (626)
T KOG2106|consen  291 FSLCMLRDGTLLSGGKDRKIILWDDN-YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGD  369 (626)
T ss_pred             EEEEEecCccEeecCccceEEecccc-ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEeccc
Confidence            99999999999999999999999933 222222222221111110      02222222333333333322232333333


Q ss_pred             CeE---------EEEecCCCeEEEEEecccceEEEeCcE----ee---------CCCCCC-------CceeecCc-ccCc
Q 008510          148 GQT---------KVVREGDNGVAYSWDMKEQKWDKLGEV----VD---------GPDDGM-------NRPILDGI-QYDY  197 (563)
Q Consensus       148 g~~---------~l~~~~~~~~~~~wd~~~~~w~~~g~v----~~---------~~~~~~-------~~~~~~g~-~~d~  197 (563)
                      +-.         .+..++.+..+.+|+...-.|.++-.-    .+         +...+.       ...+..-| ...-
T Consensus       370 elwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~  449 (626)
T KOG2106|consen  370 ELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQ  449 (626)
T ss_pred             ceeeEEcCCChhheeeccCcceEEEccCCceeEEEEecCceeEeeccCcceEEEeeccceEEEEecccceeEEEEecCCc
Confidence            222         222333335566787666667665110    00         000000       00011101 1233


Q ss_pred             EEEEEc-CCCCeeeeecCCCCCChhHHH
Q 008510          198 VFDVDI-GDGEPTRKLPYNRSDNPYDAA  224 (563)
Q Consensus       198 v~~vd~-~dg~~~~~~~~n~~~~~w~~a  224 (563)
                      +-.|.+ ++|..++-++-|..+.+|.+.
T Consensus       450 ls~v~ysp~G~~lAvgs~d~~iyiy~Vs  477 (626)
T KOG2106|consen  450 LSVVRYSPDGAFLAVGSHDNHIYIYRVS  477 (626)
T ss_pred             eEEEEEcCCCCEEEEecCCCeEEEEEEC
Confidence            556778 899999999999988888875

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.91  E-value=5.3e-08  Score=100.13  Aligned_cols=189  Identities=17%  Similarity=0.163  Sum_probs=115.8

Q ss_pred             ceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEEEccCCc--EEEEeCCCcEEEEE
Q 008510           23 QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKFLENGD--IVTACSDGVTRIWT   97 (563)
Q Consensus        23 ~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~~~p~g~--i~sgs~Dg~Irvwd   97 (563)
                      .|-..+.||++.|.|+++.|.| .+++||.||+||||.  +|.|++++...+.|.||+|+|.++  ++..+.+..+.+-+
T Consensus       391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn  470 (733)
T KOG0650|consen  391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVN  470 (733)
T ss_pred             eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeC
Confidence            4556789999999999999999 999999999999999  999999999888999999999887  55555555566655


Q ss_pred             cCCCceec----eeeecccc---cccc--eeEEee---ccCCceEEEeCCCCceeeecccCCCeEEEEecCCCeE--EEE
Q 008510           98 VHSDKVAD----SLELEAYA---SELS--QYKLCR---KKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGDNGV--AYS  163 (563)
Q Consensus        98 ~~~~~~~~----~~~~~~~~---~~v~--~~~~~~---~~~~~i~~~d~~~~~~l~~~g~~dg~~~l~~~~~~~~--~~~  163 (563)
                      ..=|....    .+.+....   ....  ..+...   .....+++---....+-++..|..|.+..+-.+++..  +++
T Consensus       471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli  550 (733)
T KOG0650|consen  471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI  550 (733)
T ss_pred             ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence            44332111    11111110   0000  001011   0111223222223334445577777766555543222  333


Q ss_pred             EecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEcCCCCeeeeecCCCCCChhHHHHHH
Q 008510          164 WDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKW  227 (563)
Q Consensus       164 wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~~dg~~~~~~~~n~~~~~w~~a~~f  227 (563)
                      .....+.                .+.--.+..+.|..+.|...++.+-..-...+++|+..++-
T Consensus       551 HQLSK~~----------------sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqe  598 (733)
T KOG0650|consen  551 HQLSKRK----------------SQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQE  598 (733)
T ss_pred             Eeccccc----------------ccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHH
Confidence            3322211                11111122256889999777788888888899999988763

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.91  E-value=6.3e-09  Score=102.95  Aligned_cols=100  Identities=19%  Similarity=0.366  Sum_probs=78.5

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe---cCCcEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE---HPGCVW   74 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~---h~~~V~   74 (563)
                      +|..+++|+.||++|+|++ +-..+.....|...|.++.|+||| .+++-+.| ..+||+  ++.+++..+   .+-...
T Consensus       155 ~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~  233 (398)
T KOG0771|consen  155 DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFS  233 (398)
T ss_pred             CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhh
Confidence            5789999999999999997 777777888899999999999999 89999999 999999  887777766   222566


Q ss_pred             EEEEccCC-----cEE-EEeCCCcEEEEEcCCCc
Q 008510           75 DAKFLENG-----DIV-TACSDGVTRIWTVHSDK  102 (563)
Q Consensus        75 ~v~~~p~g-----~i~-sgs~Dg~Irvwd~~~~~  102 (563)
                      .+.|+.++     +++ .-...+.|+.||+...+
T Consensus       234 ~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~  267 (398)
T KOG0771|consen  234 SCRFSVDNAQETLRLAASQFPGGGVRLCDISLWS  267 (398)
T ss_pred             hceecccCCCceEEEEEecCCCCceeEEEeeeec
Confidence            77787766     233 33344667777765443

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=98.91  E-value=6.6e-08  Score=92.35  Aligned_cols=73  Identities=11%  Similarity=0.181  Sum_probs=65.4

Q ss_pred             EEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceecee
Q 008510           35 VYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSL  107 (563)
Q Consensus        35 V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~  107 (563)
                      -.|+.|++.| +++.|+.||.|-|||  +...-+.+. |..+|.|++|+++|+ ++|+|.|..|.+||+..|.+....
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri  103 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI  103 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence            6789999999 999999999999999  666667777 989999999999999 999999999999999999855433

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=98.90  E-value=3.6e-08  Score=93.18  Aligned_cols=167  Identities=14%  Similarity=0.175  Sum_probs=112.5

Q ss_pred             CCCEEEEEECCCcEEEEcC-CC---ceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc-CCceeEE-Ee---c-
Q 008510            2 PGVGIISASHDCTIRLWAL-TG---QVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK-DGVCVQS-IE---H-   69 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g---~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd-~~~~~~~-l~---h-   69 (563)
                      +-+++.++|-|.|..|||+ .|   .....+-.|...|++++|...|  .|+|+|.||+||++| ....-.+ +.   . 
T Consensus       162 dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~  241 (364)
T KOG0290|consen  162 DPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSP  241 (364)
T ss_pred             CcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCC
Confidence            5578999999999999999 54   3456678999999999999876  899999999999999 3222222 22   3 


Q ss_pred             CCcEEEEEEccCCc--EEEEeCC-CcEEEEEcCCCceeceeeecccccccceeEE---------eeccCCceEEEeCCCC
Q 008510           70 PGCVWDAKFLENGD--IVTACSD-GVTRIWTVHSDKVADSLELEAYASELSQYKL---------CRKKVGGLKLEDLPGL  137 (563)
Q Consensus        70 ~~~V~~v~~~p~g~--i~sgs~D-g~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~---------~~~~~~~i~~~d~~~~  137 (563)
                      ......++|++..-  +|+-..| ..|.|.|+|... .+...++.|...|+....         +++.|....+||++..
T Consensus       242 ~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~-tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~  320 (364)
T KOG0290|consen  242 STPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC-TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM  320 (364)
T ss_pred             CCcceeeccCcCCchHHhhhhcCCceEEEEEecCCC-cceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence            34788899988654  7776666 469999999765 455677788877764442         3444556777877532


Q ss_pred             ceeeecccCCCeEEEEecCCCeEEEEEecccceEEE
Q 008510          138 EALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDK  173 (563)
Q Consensus       138 ~~l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~  173 (563)
                      ..    -.-+..+.++..+....-.+|+.....|..
T Consensus       321 ~~----~~~~dPilay~a~~EVNqi~Ws~~~~Dwia  352 (364)
T KOG0290|consen  321 PR----ENGEDPILAYTAGGEVNQIQWSSSQPDWIA  352 (364)
T ss_pred             cc----cCCCCchhhhhccceeeeeeecccCCCEEE
Confidence            11    011222333333332334567766666653

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=98.90  E-value=2.3e-08  Score=106.29  Aligned_cols=163  Identities=18%  Similarity=0.231  Sum_probs=130.2

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeEEE---ecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecCCcEEE
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLMEM---VGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWD   75 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~~l---~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~   75 (563)
                      |++.+-|+..|+|-+|++ +|-..+.+   ..|.+.|.+++...-+ .++|++.||-+++||  ....+..+....++.+
T Consensus       460 GNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~  539 (910)
T KOG1539|consen  460 GNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITG  539 (910)
T ss_pred             CceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcce
Confidence            677888899999999999 88888888   5899999999997766 899999999999999  5566777777778888


Q ss_pred             EEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccccccee--------EEeeccCCceEEEeCCCCcee------
Q 008510           76 AKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQY--------KLCRKKVGGLKLEDLPGLEAL------  140 (563)
Q Consensus        76 v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~--------~~~~~~~~~i~~~d~~~~~~l------  140 (563)
                      +..+.... ++.++.|-.|+++|..+.+..+  .+.+|.+.+..+        .++++.|+.|++||+++...+      
T Consensus       540 iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR--~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd  617 (910)
T KOG1539|consen  540 IVYHRVSDLLAIALDDFSIRVVDVVTRKVVR--EFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD  617 (910)
T ss_pred             eeeeehhhhhhhhcCceeEEEEEchhhhhhH--HhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC
Confidence            88888766 8999999999999999887543  233444444433        335677899999999987543      


Q ss_pred             ----eecccCCCeEEEEecCCCeEEEEEecc
Q 008510          141 ----QIPGTNAGQTKVVREGDNGVAYSWDMK  167 (563)
Q Consensus       141 ----~~~g~~dg~~~l~~~~~~~~~~~wd~~  167 (563)
                          ....++.|.+....+-+..-+|.|...
T Consensus       618 ~~~~sls~SPngD~LAT~Hvd~~gIylWsNk  648 (910)
T KOG1539|consen  618 SPCTSLSFSPNGDFLATVHVDQNGIYLWSNK  648 (910)
T ss_pred             CcceeeEECCCCCEEEEEEecCceEEEEEch
Confidence                334778888888888876778899743

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=98.89  E-value=4.4e-08  Score=97.88  Aligned_cols=195  Identities=17%  Similarity=0.173  Sum_probs=137.7

Q ss_pred             CCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CC---ceeEEEe-cCCcEEEEEEccCCc--EEEEeCCCcEEEEEcCCCce
Q 008510           32 TAIVYSIDSHASG-LIVSGSEDRFAKIWK-DG---VCVQSIE-HPGCVWDAKFLENGD--IVTACSDGVTRIWTVHSDKV  103 (563)
Q Consensus        32 ~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~---~~~~~l~-h~~~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~  103 (563)
                      .+.|.+|.|+|.. .+.+||.||+++|+. +|   ..++.+. ...+|.+.+|.|+|.  +++++.-...+.||+.+.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            3679999999998 899999999999999 54   4567777 556999999999998  78888899999999988775


Q ss_pred             eceeeecc--------ccc-ccceeEEeeccCCceEEEeCCCCcee----------eecccCCCeEEEEecCCCeEEEEE
Q 008510          104 ADSLELEA--------YAS-ELSQYKLCRKKVGGLKLEDLPGLEAL----------QIPGTNAGQTKVVREGDNGVAYSW  164 (563)
Q Consensus       104 ~~~~~~~~--------~~~-~v~~~~~~~~~~~~i~~~d~~~~~~l----------~~~g~~dg~~~l~~~~~~~~~~~w  164 (563)
                      .......+        |+- +...+++..+..|.|.+....+.+.+          ...+++||...+..+++ +.++.|
T Consensus       293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~-GeV~v~  371 (514)
T KOG2055|consen  293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGT-GEVYVW  371 (514)
T ss_pred             ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCC-ceEEEE
Confidence            43333222        221 23345555666677777666554432          22366788666666555 588999


Q ss_pred             ecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHHHHHHHhcCCCcccHHHHH
Q 008510          165 DMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQQIV  242 (563)
Q Consensus       165 d~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~~f~~~~~l~~~~~~~v~  242 (563)
                      |.....+...+..-             |.-+  -.++.+ .+|.++++++--+-+|+|+-..-|-..+--|..-+++++
T Consensus       372 nl~~~~~~~rf~D~-------------G~v~--gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt  435 (514)
T KOG2055|consen  372 NLRQNSCLHRFVDD-------------GSVH--GTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT  435 (514)
T ss_pred             ecCCcceEEEEeec-------------Cccc--eeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh
Confidence            98877544332111             1111  134444 578888999888889999988888888878876666664

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=98.89  E-value=3.3e-08  Score=95.45  Aligned_cols=133  Identities=19%  Similarity=0.378  Sum_probs=89.9

Q ss_pred             CCEEEEEECCCcEEEEcC-C-C-ceeEEEecCC-CcEEEEEEcCCC-eEEEEeC----CCcEEEEc---CCceeEEEe--
Q 008510            3 GVGIISASHDCTIRLWAL-T-G-QVLMEMVGHT-AIVYSIDSHASG-LIVSGSE----DRFAKIWK---DGVCVQSIE--   68 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~-g-~~i~~l~gH~-~~V~~v~~~p~g-~l~s~s~----D~tvriWd---~~~~~~~l~--   68 (563)
                      +..+.||+.||+||+||+ . + .....+.+|. .+..|++.+-.+ .+++|.+    |-.|.+||   ..+.+..+.  
T Consensus        84 ~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eS  163 (376)
T KOG1188|consen   84 PHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNES  163 (376)
T ss_pred             CCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhh
Confidence            356889999999999999 3 3 3344556677 345566665444 5666543    56799999   334355554  


Q ss_pred             cCCcEEEEEEccCCc--EEEEeCCCcEEEEEcCCCceeceeeec------------ccccccceeEEeeccCCceEEEeC
Q 008510           69 HPGCVWDAKFLENGD--IVTACSDGVTRIWTVHSDKVADSLELE------------AYASELSQYKLCRKKVGGLKLEDL  134 (563)
Q Consensus        69 h~~~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~~i~~~d~  134 (563)
                      |.+.|+++.|+|+..  +++||.||.|.+||+.....  ...+.            ++.......+++.....+..+|++
T Consensus       164 H~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E--eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~el  241 (376)
T KOG1188|consen  164 HNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE--EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYEL  241 (376)
T ss_pred             ccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc--hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEc
Confidence            999999999999754  89999999999999986531  11111            111122234556666778888888


Q ss_pred             CCC
Q 008510          135 PGL  137 (563)
Q Consensus       135 ~~~  137 (563)
                      ...
T Consensus       242 e~~  244 (376)
T KOG1188|consen  242 EDG  244 (376)
T ss_pred             cCC
Confidence            654

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=98.88  E-value=5.5e-08  Score=97.22  Aligned_cols=207  Identities=11%  Similarity=0.098  Sum_probs=126.5

Q ss_pred             CEEEEEECCCcEEEEcCCCc---eeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCc--------------
Q 008510            4 VGIISASHDCTIRLWALTGQ---VLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGV--------------   62 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~~g~---~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~--------------   62 (563)
                      ..+++||.|+++++|.++|+   .+..+.--..+|.+.+|.|+|  .++++|.-.....||  +.+              
T Consensus       226 plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~  305 (514)
T KOG2055|consen  226 PLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKS  305 (514)
T ss_pred             ceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccch
Confidence            46899999999999999664   455665567889999999998  688888888999999  221              


Q ss_pred             -------------------------------eeEEEecCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeec
Q 008510           63 -------------------------------CVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELE  110 (563)
Q Consensus        63 -------------------------------~~~~l~h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~  110 (563)
                                                     .+.++..++.|..++|+.+|+ |+++|.+|.|.+||++...+.+...-.
T Consensus       306 ~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~  385 (514)
T KOG2055|consen  306 MERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDD  385 (514)
T ss_pred             hheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeec
Confidence                                           122223456688999999988 888888999999999988755443322


Q ss_pred             ccc------ccc-ceeEEeeccCCceEEEeCCCCc-----------------eeeecccCCCeEEEEecCCCeE-EEEEe
Q 008510          111 AYA------SEL-SQYKLCRKKVGGLKLEDLPGLE-----------------ALQIPGTNAGQTKVVREGDNGV-AYSWD  165 (563)
Q Consensus       111 ~~~------~~v-~~~~~~~~~~~~i~~~d~~~~~-----------------~l~~~g~~dg~~~l~~~~~~~~-~~~wd  165 (563)
                      +-.      .+. ..+..+++..|-+.++|....-                 +-...+++|+++..+.+..... ...-.
T Consensus       386 G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVH  465 (514)
T KOG2055|consen  386 GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVH  465 (514)
T ss_pred             CccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEe
Confidence            111      111 1344456666788888853210                 0111244444443333321111 00000


Q ss_pred             cccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHH
Q 008510          166 MKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDA  223 (563)
Q Consensus       166 ~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~  223 (563)
                      ....      .|.. .      .--.+..-.+|.+++| |.|..++-+--.+.+.+|..
T Consensus       466 vPS~------TVFs-N------fP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL  511 (514)
T KOG2055|consen  466 VPSC------TVFS-N------FPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL  511 (514)
T ss_pred             ccce------eeec-c------CCCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence            0000      0000 0      0011334578999999 87887777777777777764

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=98.85  E-value=9.7e-08  Score=91.57  Aligned_cols=211  Identities=18%  Similarity=0.220  Sum_probs=128.5

Q ss_pred             CCCEEEEEECCCcEEEEcC--CC---c--------eeEEEe-cCCCcEEEEEEc-------CCC-eEEEEeCCCcEEEEc
Q 008510            2 PGVGIISASHDCTIRLWAL--TG---Q--------VLMEMV-GHTAIVYSIDSH-------ASG-LIVSGSEDRFAKIWK   59 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~--~g---~--------~i~~l~-gH~~~V~~v~~~-------p~g-~l~s~s~D~tvriWd   59 (563)
                      ||.-|++-+.|..+++|++  +.   +        ...+++ .....||+.+|-       |+. .+++++.|.-|++||
T Consensus        60 DGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wd  139 (406)
T KOG2919|consen   60 DGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWD  139 (406)
T ss_pred             CCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCceeeee
Confidence            6889999999999999997  21   1        111111 123568888875       444 899999999999999


Q ss_pred             --CCceeEEEe---cCC---cEEEEEEccCCcEEEEeCCCcEEEEEc-CCCceeceeeeccc-----ccccceeEEe---
Q 008510           60 --DGVCVQSIE---HPG---CVWDAKFLENGDIVTACSDGVTRIWTV-HSDKVADSLELEAY-----ASELSQYKLC---  122 (563)
Q Consensus        60 --~~~~~~~l~---h~~---~V~~v~~~p~g~i~sgs~Dg~Irvwd~-~~~~~~~~~~~~~~-----~~~v~~~~~~---  122 (563)
                        +|+...++.   |.+   ...+++|+|||.-+-++....||+||+ |+|+..+.......     ..-+++..++   
T Consensus       140 aftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~  219 (406)
T KOG2919|consen  140 AFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMD  219 (406)
T ss_pred             ccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCC
Confidence              887766665   544   467999999999555678899999999 88875443322211     1112222222   


Q ss_pred             ------eccCCceEEEeCCCCceeeec-ccCCCeEEEEecCCCeE----------EEEEecccceEEEeCcEeeCCCCCC
Q 008510          123 ------RKKVGGLKLEDLPGLEALQIP-GTNAGQTKVVREGDNGV----------AYSWDMKEQKWDKLGEVVDGPDDGM  185 (563)
Q Consensus       123 ------~~~~~~i~~~d~~~~~~l~~~-g~~dg~~~l~~~~~~~~----------~~~wd~~~~~w~~~g~v~~~~~~~~  185 (563)
                            ++....+-++.-.+.+.+... |+..|.+.+.++.++..          +.+||++.-. +.+-.+-.+     
T Consensus       220 ~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~-~pv~~L~rh-----  293 (406)
T KOG2919|consen  220 SKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR-DPVYALERH-----  293 (406)
T ss_pred             CcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc-chhhhhhhh-----
Confidence                  222233444444444555544 67777777666655443          4456653221 111111111     


Q ss_pred             CceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHH
Q 008510          186 NRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAA  224 (563)
Q Consensus       186 ~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a  224 (563)
                           .+.. +--+-.|+ ++|+.++++.-++.+++|+..
T Consensus       294 -----v~~T-NQRI~FDld~~~~~LasG~tdG~V~vwdlk  327 (406)
T KOG2919|consen  294 -----VGDT-NQRILFDLDPKGEILASGDTDGSVRVWDLK  327 (406)
T ss_pred             -----ccCc-cceEEEecCCCCceeeccCCCccEEEEecC
Confidence                 1111 11133455 688888999999999999964

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=98.84  E-value=1.4e-08  Score=102.12  Aligned_cols=117  Identities=20%  Similarity=0.213  Sum_probs=98.2

Q ss_pred             EEEEEECCCcEEEEcCCCc-e-eEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEEE
Q 008510            5 GIISASHDCTIRLWALTGQ-V-LMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKF   78 (563)
Q Consensus         5 ~l~s~s~DgtIrlWd~~g~-~-i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~~   78 (563)
                      +|.++|.+|+|.+||++|. + ..-.+.|..+...|||+|..  .|++.|.|+.|.+||  ..+....+....+..+|+|
T Consensus       179 lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf  258 (673)
T KOG4378|consen  179 LLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAF  258 (673)
T ss_pred             eeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeee
Confidence            5788999999999999654 3 33456799999999999987  899999999999999  5555666666668999999


Q ss_pred             ccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEe
Q 008510           79 LENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLC  122 (563)
Q Consensus        79 ~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~  122 (563)
                      .++|. ++.|.+.|.|..||+|..+ .+...+.+|...|.+..+.
T Consensus       259 ~~~G~~L~aG~s~G~~i~YD~R~~k-~Pv~v~sah~~sVt~vafq  302 (673)
T KOG4378|consen  259 SECGTYLCAGNSKGELIAYDMRSTK-APVAVRSAHDASVTRVAFQ  302 (673)
T ss_pred             cCCceEEEeecCCceEEEEecccCC-CCceEeeecccceeEEEee
Confidence            99999 8999999999999999876 6677788888887766653

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.84  E-value=2.6e-08  Score=97.11  Aligned_cols=91  Identities=12%  Similarity=0.262  Sum_probs=82.3

Q ss_pred             CCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCc-EEEEc--CCceeEEEe---cCCcEEEEEEccCCc
Q 008510           12 DCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRF-AKIWK--DGVCVQSIE---HPGCVWDAKFLENGD   83 (563)
Q Consensus        12 DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~t-vriWd--~~~~~~~l~---h~~~V~~v~~~p~g~   83 (563)
                      -|.|.+||. +-+.+.++..|.+.+-+++|+++| .+||+|+-|| |||+.  +|+.++.|+   .+..|.+++|+|++.
T Consensus       152 ~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~  231 (391)
T KOG2110|consen  152 SGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQ  231 (391)
T ss_pred             CceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCC
Confidence            588999999 889999999999999999999999 9999999998 79999  889898888   455899999999999


Q ss_pred             -EEEEeCCCcEEEEEcCCCc
Q 008510           84 -IVTACSDGVTRIWTVHSDK  102 (563)
Q Consensus        84 -i~sgs~Dg~Irvwd~~~~~  102 (563)
                       +++.|..++|.+|.+....
T Consensus       232 ~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  232 FLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             eEEEecCCCeEEEEEecccc
Confidence             7777888999999987643

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=98.84  E-value=1.7e-08  Score=110.01  Aligned_cols=128  Identities=27%  Similarity=0.443  Sum_probs=99.4

Q ss_pred             EEEEEECCCcEEEEcC--CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCcee--EEEecCCcEEEEE
Q 008510            5 GIISASHDCTIRLWAL--TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCV--QSIEHPGCVWDAK   77 (563)
Q Consensus         5 ~l~s~s~DgtIrlWd~--~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~--~~l~h~~~V~~v~   77 (563)
                      ++++|+.-+.|.+|+.  +..++ .+.||.+.|.++.++.+| +++|+|+|+++|+|+  +.+..  ..+.|++.||.+.
T Consensus       147 ~i~~gsv~~~iivW~~~~dn~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~  225 (967)
T KOG0974|consen  147 YIASGSVFGEIIVWKPHEDNKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACC  225 (967)
T ss_pred             EEEeccccccEEEEeccccCCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEE
Confidence            6889999999999999  33343 688999999999999999 999999999999999  44443  3456999999999


Q ss_pred             EccCCcEEEEeCCCcEEEEEcCCCceeceeeecccccc--------c-ceeEEeeccCCceEEEeCCCC
Q 008510           78 FLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASE--------L-SQYKLCRKKVGGLKLEDLPGL  137 (563)
Q Consensus        78 ~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~--------v-~~~~~~~~~~~~i~~~d~~~~  137 (563)
                      |+|+ .|+|++.|-+.|+|+.......   .+..|...        . ....+++..|+.+++||+.+.
T Consensus       226 ~~~n-~i~t~gedctcrvW~~~~~~l~---~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  226 FLPN-RIITVGEDCTCRVWGVNGTQLE---VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             eccc-eeEEeccceEEEEEecccceeh---hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence            9999 9999999999999966543311   22222211        1 133456778899999998643

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=98.82  E-value=7.5e-08  Score=90.35  Aligned_cols=96  Identities=19%  Similarity=0.344  Sum_probs=75.0

Q ss_pred             CCCEEEEE--ECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCC---CcEEEEc--CCceeEEEecCCcE
Q 008510            2 PGVGIISA--SHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSED---RFAKIWK--DGVCVQSIEHPGCV   73 (563)
Q Consensus         2 ~g~~l~s~--s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D---~tvriWd--~~~~~~~l~h~~~V   73 (563)
                      +|+.|+.+  ..++.|.+||++++.+.++.  ...+..+.|+|+| .++.+|.+   |.+.+||  +.+.+.+..|.. +
T Consensus        70 ~g~~favi~g~~~~~v~lyd~~~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~  146 (194)
T PF08662_consen   70 NGNEFAVIYGSMPAKVTLYDVKGKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-A  146 (194)
T ss_pred             CCCEEEEEEccCCcccEEEcCcccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc-E
Confidence            36666554  35789999999988888774  5677899999999 78877654   5699999  667777776765 7


Q ss_pred             EEEEEccCCc-EEEEeC------CCcEEEEEcCC
Q 008510           74 WDAKFLENGD-IVTACS------DGVTRIWTVHS  100 (563)
Q Consensus        74 ~~v~~~p~g~-i~sgs~------Dg~Irvwd~~~  100 (563)
                      ..++|+|+|+ ++++..      |+.++||+...
T Consensus       147 t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  147 TDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             EEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence            8999999999 766653      78889999853

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=98.79  E-value=9.8e-09  Score=104.23  Aligned_cols=79  Identities=23%  Similarity=0.317  Sum_probs=69.2

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA   76 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v   76 (563)
                      ||+++|+.|.||.+||+|. +.+++..++..-+...||+|+||| ++++||+|--|.||.  ..+.+..-+ |..+|..|
T Consensus       301 DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~V  380 (636)
T KOG2394|consen  301 DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVV  380 (636)
T ss_pred             CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeE
Confidence            7899999999999999999 666666666667889999999999 999999999999999  666655544 99999999


Q ss_pred             EEcc
Q 008510           77 KFLE   80 (563)
Q Consensus        77 ~~~p   80 (563)
                      +|.|
T Consensus       381 aFDp  384 (636)
T KOG2394|consen  381 AFDP  384 (636)
T ss_pred             eecc
Confidence            9987

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=98.78  E-value=4.7e-07  Score=93.44  Aligned_cols=133  Identities=27%  Similarity=0.504  Sum_probs=102.5

Q ss_pred             EEEEEEC-CCcEEEEcCC--CceeEEEecCCCcEEEEEEcCCC-eEEEEeC-CCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510            5 GIISASH-DCTIRLWALT--GQVLMEMVGHTAIVYSIDSHASG-LIVSGSE-DRFAKIWK--DGVCVQSIE-HPGCVWDA   76 (563)
Q Consensus         5 ~l~s~s~-DgtIrlWd~~--g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~-D~tvriWd--~~~~~~~l~-h~~~V~~v   76 (563)
                      .++.++. |+.+++|+..  +.....+.+|...|.+++|+|++ .+++++. |+++++|+  .+..+..+. |...|.++
T Consensus       125 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  204 (466)
T COG2319         125 ILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSL  204 (466)
T ss_pred             EEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEE
Confidence            4555455 9999999994  68889999999999999999999 7888885 99999999  557777777 88899999


Q ss_pred             EEccCCc-EEE-EeCCCcEEEEEcCCCceeceeeecccccc------c-ceeEEeeccCCceEEEeCCCCc
Q 008510           77 KFLENGD-IVT-ACSDGVTRIWTVHSDKVADSLELEAYASE------L-SQYKLCRKKVGGLKLEDLPGLE  138 (563)
Q Consensus        77 ~~~p~g~-i~s-gs~Dg~Irvwd~~~~~~~~~~~~~~~~~~------v-~~~~~~~~~~~~i~~~d~~~~~  138 (563)
                      +|+|++. ++. ++.|+.|++||...+..... .+..+...      . ....++...++.+++|+.+...
T Consensus       205 ~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  274 (466)
T COG2319         205 AFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS-TLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSS  274 (466)
T ss_pred             EEcCCcceEEEEecCCCcEEEEECCCCcEEee-ecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCC
Confidence            9999997 544 49999999998886654431 11211111      1 1345567788999999987554

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.78  E-value=1.9e-07  Score=99.10  Aligned_cols=191  Identities=14%  Similarity=0.111  Sum_probs=113.2

Q ss_pred             CCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCC---CcEEEEc--CCceeEEEe-cCCcEEEEEEccCCc-
Q 008510           12 DCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSED---RFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGD-   83 (563)
Q Consensus        12 DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D---~tvriWd--~~~~~~~l~-h~~~V~~v~~~p~g~-   83 (563)
                      +..|++||.+|...+.+..|...+.+.+|+|+| .++.++.+   ..|++||  +++. +.+. .++...+++|+|||+ 
T Consensus       183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~-~~l~~~~g~~~~~~wSPDG~~  261 (429)
T PRK01742        183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR-KVVASFRGHNGAPAFSPDGSR  261 (429)
T ss_pred             eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce-EEEecCCCccCceeECCCCCE
Confidence            478999999877777888899999999999999 77776543   3699999  4433 2233 334455789999998 


Q ss_pred             EEEEe-CCCcEEEE--EcCCCceeceeeec------ccccccceeEEeeccCCceEEEeCC--CCce-------eeeccc
Q 008510           84 IVTAC-SDGVTRIW--TVHSDKVADSLELE------AYASELSQYKLCRKKVGGLKLEDLP--GLEA-------LQIPGT  145 (563)
Q Consensus        84 i~sgs-~Dg~Irvw--d~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~i~~~d~~--~~~~-------l~~~g~  145 (563)
                      |+.++ .||.+.+|  |+.++.......-.      .+...-..+.+....++...+|+++  +...       .....+
T Consensus       262 La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~~~~~~S  341 (429)
T PRK01742        262 LAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRGYSAQIS  341 (429)
T ss_pred             EEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCCCCccCC
Confidence            76654 68876665  55555422111100      1111111234444455677777653  2211       112256


Q ss_pred             CCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHH
Q 008510          146 NAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDA  223 (563)
Q Consensus       146 ~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~  223 (563)
                      +||...++.+.+ . ++.||..++.+..+.               .+.  + ...+.+ +||+.++....+++...|.+
T Consensus       342 pDG~~ia~~~~~-~-i~~~Dl~~g~~~~lt---------------~~~--~-~~~~~~sPdG~~i~~~s~~g~~~~l~~  400 (429)
T PRK01742        342 ADGKTLVMINGD-N-VVKQDLTSGSTEVLS---------------STF--L-DESPSISPNGIMIIYSSTQGLGKVLQL  400 (429)
T ss_pred             CCCCEEEEEcCC-C-EEEEECCCCCeEEec---------------CCC--C-CCCceECCCCCEEEEEEcCCCceEEEE
Confidence            677766555443 2 344776665544221               000  0 124556 78887777777777766654

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.77  E-value=3.7e-07  Score=87.59  Aligned_cols=92  Identities=14%  Similarity=0.308  Sum_probs=79.7

Q ss_pred             CCCcEEEEcC-CCc--eeEEEecCCCcEEEEEEcCCC-eEEEEeCCCc-EEEEc--CCceeEEEe---cCCcEEEEEEcc
Q 008510           11 HDCTIRLWAL-TGQ--VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRF-AKIWK--DGVCVQSIE---HPGCVWDAKFLE   80 (563)
Q Consensus        11 ~DgtIrlWd~-~g~--~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~t-vriWd--~~~~~~~l~---h~~~V~~v~~~p   80 (563)
                      .-|.|+|-|+ ..+  .-..+..|.+.|.|++.+-+| .+||+|..|| |||||  +|+.++.++   .++.|+|++|+|
T Consensus       157 k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp  236 (346)
T KOG2111|consen  157 KTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSP  236 (346)
T ss_pred             ccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCC
Confidence            4588999998 222  246788999999999999999 9999999998 89999  899999998   556899999999


Q ss_pred             CCc-EEEEeCCCcEEEEEcCCCc
Q 008510           81 NGD-IVTACSDGVTRIWTVHSDK  102 (563)
Q Consensus        81 ~g~-i~sgs~Dg~Irvwd~~~~~  102 (563)
                      ++. +++.|..|++.||.++...
T Consensus       237 ~~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  237 NSSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             CccEEEEEcCCCeEEEEEeecCC
Confidence            999 7888888999999998644

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=98.77  E-value=2.3e-08  Score=93.30  Aligned_cols=129  Identities=21%  Similarity=0.251  Sum_probs=91.1

Q ss_pred             EEEEEECCCcEEEEcC-CC----------ceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc----CCcee----
Q 008510            5 GIISASHDCTIRLWAL-TG----------QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK----DGVCV----   64 (563)
Q Consensus         5 ~l~s~s~DgtIrlWd~-~g----------~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd----~~~~~----   64 (563)
                      .++.|-.+|.|-+||+ ++          +.+..+..|..+|.++.+.+.- .=++||.|..+..|+    ++.+.    
T Consensus       167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e  246 (323)
T KOG0322|consen  167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKE  246 (323)
T ss_pred             EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccce
Confidence            3667888999999999 55          3344456799999999988754 557788888888888    23322    


Q ss_pred             EEEecCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCcee-----ceeeecccccccc-eeEEeeccCCceEEEeC
Q 008510           65 QSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVA-----DSLELEAYASELS-QYKLCRKKVGGLKLEDL  134 (563)
Q Consensus        65 ~~l~h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~-----~~~~~~~~~~~v~-~~~~~~~~~~~i~~~d~  134 (563)
                      .+++++ .|..+..-||++ +||+|.||.||||..++.+..     +...+....-+.. .....++.|..|.+|++
T Consensus       247 ~~lknp-Gv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  247 ITLKNP-GVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             EEecCC-CccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            122233 688889999998 799999999999999887643     2233333332333 45556778889999986

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=98.75  E-value=1.5e-08  Score=107.60  Aligned_cols=167  Identities=25%  Similarity=0.262  Sum_probs=108.8

Q ss_pred             CEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc-CCceeEEEe------cCCcEEE
Q 008510            4 VGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK-DGVCVQSIE------HPGCVWD   75 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd-~~~~~~~l~------h~~~V~~   75 (563)
                      .+++++|+|..||+|.+ +|.++..+.||++.|++++|+|-   .+.+.||++++|| .-..+....      ...-+.+
T Consensus       245 ~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~---~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s  321 (1113)
T KOG0644|consen  245 TMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPR---ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDS  321 (1113)
T ss_pred             hhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCcc---ccCCCCCceEeccccccccccCCCCCCcccccceee
Confidence            35789999999999999 99999999999999999999997   3889999999999 533322221      2346777


Q ss_pred             EEEccCCc-EEEEeCCCcEEEEEcCCCceecee-eecccccccceeEEeeccCCceEEEeCCCCceeeec-ccCCCeEEE
Q 008510           76 AKFLENGD-IVTACSDGVTRIWTVHSDKVADSL-ELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIP-GTNAGQTKV  152 (563)
Q Consensus        76 v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~-g~~dg~~~l  152 (563)
                      +-|..+|+ ++||+.|+.-+.|....-.+.... .+...........+++..+--+++|.+-.+..+... |+.|..+.+
T Consensus       322 ~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvL  401 (1113)
T KOG0644|consen  322 ILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVL  401 (1113)
T ss_pred             eeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeee
Confidence            88888887 999999999888876432211110 111111112233334444456777887766544433 555544433


Q ss_pred             E----------ecCCCeEEEEEecccceEEE
Q 008510          153 V----------REGDNGVAYSWDMKEQKWDK  173 (563)
Q Consensus       153 ~----------~~~~~~~~~~wd~~~~~w~~  173 (563)
                      -          ..+.++...+||...+.-++
T Consensus       402 d~Hpfn~ri~msag~dgst~iwdi~eg~pik  432 (1113)
T KOG0644|consen  402 DVHPFNPRIAMSAGYDGSTIIWDIWEGIPIK  432 (1113)
T ss_pred             eecCCCcHhhhhccCCCceEeeecccCCcce
Confidence            2          22333455678766654443

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=98.75  E-value=9.7e-08  Score=97.16  Aligned_cols=117  Identities=16%  Similarity=0.225  Sum_probs=86.0

Q ss_pred             CCEEEEEECCCcEEEEcC--C-C------------c--------------eeEEEecCCCcEEEEEEcCCC-eEEEEeCC
Q 008510            3 GVGIISASHDCTIRLWAL--T-G------------Q--------------VLMEMVGHTAIVYSIDSHASG-LIVSGSED   52 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~--~-g------------~--------------~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D   52 (563)
                      ...|+.+-.+|.+.+||.  . +            .              ++..+.--++.|...+|+||| ++|+.|.|
T Consensus       232 ~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqD  311 (636)
T KOG2394|consen  232 DSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQD  311 (636)
T ss_pred             CceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecC
Confidence            456777888888888864  1 1            1              111222234568889999999 99999999


Q ss_pred             CcEEEEc-C-CceeEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEE
Q 008510           53 RFAKIWK-D-GVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKL  121 (563)
Q Consensus        53 ~tvriWd-~-~~~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~  121 (563)
                      |.+||+| . .+.+..++ -=+...||+|+|||+ |++|+.|..|.||....+|+..  .-++|...|..+.+
T Consensus       312 GfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVA--RGqGHkSWVs~VaF  382 (636)
T KOG2394|consen  312 GFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVA--RGQGHKSWVSVVAF  382 (636)
T ss_pred             ceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEE--eccccccceeeEee
Confidence            9999999 4 44444444 346899999999999 9999999999999999988432  33456666665554

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=98.74  E-value=1.6e-07  Score=88.85  Aligned_cols=162  Identities=21%  Similarity=0.315  Sum_probs=102.8

Q ss_pred             CEEEEEECCCcEEEEcCC---Cc--eeEEE-----ecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCc----eeE
Q 008510            4 VGIISASHDCTIRLWALT---GQ--VLMEM-----VGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGV----CVQ   65 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~~---g~--~i~~l-----~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~----~~~   65 (563)
                      +.|||+| | .+|+|.+.   ++  +...+     ..|.+++++..|+.-.  ++.++|-|-|+.|||  .+.    ..|
T Consensus       114 dlLATs~-D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQ  191 (364)
T KOG0290|consen  114 DLLATSS-D-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQ  191 (364)
T ss_pred             chhhccc-C-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeE
Confidence            3466654 3 59999982   11  11112     2456788999998643  899999999999999  431    345


Q ss_pred             EEecCCcEEEEEEccCCc--EEEEeCCCcEEEEEcCCCceeceeeecccc------------cccceeEEeeccCCceEE
Q 008510           66 SIEHPGCVWDAKFLENGD--IVTACSDGVTRIWTVHSDKVADSLELEAYA------------SELSQYKLCRKKVGGLKL  131 (563)
Q Consensus        66 ~l~h~~~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~------------~~v~~~~~~~~~~~~i~~  131 (563)
                      .+.|...|..|+|...|.  +|+.|.||.||+||+|.-.... ...+.-.            ....-+.--......|.+
T Consensus       192 LIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHST-IIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~i  270 (364)
T KOG0290|consen  192 LIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHST-IIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVI  270 (364)
T ss_pred             EEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccce-EEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEE
Confidence            566999999999999776  8999999999999999765211 0101000            001111111222356778


Q ss_pred             EeCCCCceee--eccc----------CCCeEEEEecCCCeEEEEEeccc
Q 008510          132 EDLPGLEALQ--IPGT----------NAGQTKVVREGDNGVAYSWDMKE  168 (563)
Q Consensus       132 ~d~~~~~~l~--~~g~----------~dg~~~l~~~~~~~~~~~wd~~~  168 (563)
                      .|++-+....  ..+|          +.....++..+|+..+.+||..+
T Consensus       271 LDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q  319 (364)
T KOG0290|consen  271 LDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ  319 (364)
T ss_pred             EEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence            8876543221  1132          33345677888888899999744

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=98.72  E-value=3.7e-07  Score=87.65  Aligned_cols=194  Identities=14%  Similarity=0.184  Sum_probs=133.1

Q ss_pred             CCCEEEEEECCCcEEEEcCC----CceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc---CCce---eEEEecC
Q 008510            2 PGVGIISASHDCTIRLWALT----GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK---DGVC---VQSIEHP   70 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~~----g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd---~~~~---~~~l~h~   70 (563)
                      |+..+|.|-+...|.||...    -+..+++..|...|++|+|+|.+ .+++|+.|+.-.+|.   .++-   +-.+++.
T Consensus        21 drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiN  100 (361)
T KOG1523|consen   21 DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRIN  100 (361)
T ss_pred             CCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEec
Confidence            56789999999999999982    35788999999999999999998 999999999999999   3332   2334489


Q ss_pred             CcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceeeecccCCCe
Q 008510           71 GCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQ  149 (563)
Q Consensus        71 ~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg~  149 (563)
                      ..+.+|.|+|+++ ||+||.-..|.||......--   -...|....        --.+|...|.....++...|+.|+.
T Consensus       101 rAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdW---WVsKhikkP--------irStv~sldWhpnnVLlaaGs~D~k  169 (361)
T KOG1523|consen  101 RAATCVKWSPKENKFAVGSGARLISVCYYEQENDW---WVSKHIKKP--------IRSTVTSLDWHPNNVLLAAGSTDGK  169 (361)
T ss_pred             cceeeEeecCcCceEEeccCccEEEEEEEecccce---ehhhhhCCc--------cccceeeeeccCCcceecccccCcc
Confidence            9999999999988 999999999999998765300   000000000        0024455666777788888888888


Q ss_pred             EEEEecCCCeEEEEEecccc----eEE---EeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChh
Q 008510          150 TKVVREGDNGVAYSWDMKEQ----KWD---KLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPY  221 (563)
Q Consensus       150 ~~l~~~~~~~~~~~wd~~~~----~w~---~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w  221 (563)
                      .+++..      |+=+..++    -|.   +.|.+...         +. ..++++..|.| ++|..++=..-|.++..-
T Consensus       170 ~rVfSa------yIK~Vdekpap~pWgsk~PFG~lm~E---------~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~  233 (361)
T KOG1523|consen  170 CRVFSA------YIKGVDEKPAPTPWGSKMPFGQLMSE---------AS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFV  233 (361)
T ss_pred             eeEEEE------eeeccccCCCCCCCccCCcHHHHHHh---------hc-cCCCceeeeEeCCCCCEeeEecCCCceEEe
Confidence            777653      22222111    011   11222211         21 34588999999 888877777766665443


Q ss_pred             H
Q 008510          222 D  222 (563)
Q Consensus       222 ~  222 (563)
                      +
T Consensus       234 d  234 (361)
T KOG1523|consen  234 D  234 (361)
T ss_pred             e
Confidence            3

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.70  E-value=4.4e-08  Score=99.67  Aligned_cols=101  Identities=24%  Similarity=0.394  Sum_probs=85.5

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEE-ecCCCcEEEEEEcCCC---eEEEEeCCCcEEEEc-CC--------ce---e
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEM-VGHTAIVYSIDSHASG---LIVSGSEDRFAKIWK-DG--------VC---V   64 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l-~gH~~~V~~v~~~p~g---~l~s~s~D~tvriWd-~~--------~~---~   64 (563)
                      +|.+|+|||.|-.+.|||. ..+++..+ .||+..|+|+.|.|..   .++||+.|..|+++| +.        ..   .
T Consensus        61 dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~  140 (758)
T KOG1310|consen   61 DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETT  140 (758)
T ss_pred             CCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchh
Confidence            7999999999999999999 77777666 4899999999999953   899999999999999 31        11   2


Q ss_pred             EEEe-cCCcEEEEEEccCCc--EEEEeCCCcEEEEEcCCCc
Q 008510           65 QSIE-HPGCVWDAKFLENGD--IVTACSDGVTRIWTVHSDK  102 (563)
Q Consensus        65 ~~l~-h~~~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~  102 (563)
                      ..+. |...|..++..|++.  +.+++.||+||-+|++...
T Consensus       141 ~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph  181 (758)
T KOG1310|consen  141 RCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPH  181 (758)
T ss_pred             hhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCc
Confidence            2233 888999999999984  8999999999999999754

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.69  E-value=3.6e-07  Score=101.13  Aligned_cols=151  Identities=18%  Similarity=0.276  Sum_probs=104.4

Q ss_pred             EcCCCceeEEEecCCCcEEEEEEcCC-C-eEEEEeCCCcEEEEc----CC-----ceeEEEe-cCCcEEEEEEccCCc-E
Q 008510           18 WALTGQVLMEMVGHTAIVYSIDSHAS-G-LIVSGSEDRFAKIWK----DG-----VCVQSIE-HPGCVWDAKFLENGD-I   84 (563)
Q Consensus        18 Wd~~g~~i~~l~gH~~~V~~v~~~p~-g-~l~s~s~D~tvriWd----~~-----~~~~~l~-h~~~V~~v~~~p~g~-i   84 (563)
                      |+..|..+..+..|...|..++.++. + .|+|||.||+||+|+    .+     ++..++. ....+.++.+.++|+ +
T Consensus      1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred             CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence            88899999999999999999988765 4 999999999999999    12     2333444 455899999999999 9


Q ss_pred             EEEeCCCcEEEEEcCCC--ceec--------------eeeecccccccce-eEEeeccCCceEEEeCCCCcee-------
Q 008510           85 VTACSDGVTRIWTVHSD--KVAD--------------SLELEAYASELSQ-YKLCRKKVGGLKLEDLPGLEAL-------  140 (563)
Q Consensus        85 ~sgs~Dg~Irvwd~~~~--~~~~--------------~~~~~~~~~~v~~-~~~~~~~~~~i~~~d~~~~~~l-------  140 (563)
                      |.|+.||.|++.+++..  +...              ...+.++...... ..+.+...+.|..||.+....+       
T Consensus      1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~ 1193 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL 1193 (1431)
T ss_pred             EEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc
Confidence            99999999999998762  1110              0112233333334 4555666788999998754322       


Q ss_pred             ------eecccCCCeEEEEecCCCeEEEEEecccc
Q 008510          141 ------QIPGTNAGQTKVVREGDNGVAYSWDMKEQ  169 (563)
Q Consensus       141 ------~~~g~~dg~~~l~~~~~~~~~~~wd~~~~  169 (563)
                            .....+.+.+.+.++.. +...+||.+-+
T Consensus      1194 ~hG~vTSi~idp~~~WlviGts~-G~l~lWDLRF~ 1227 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCNWLVIGTSR-GQLVLWDLRFR 1227 (1431)
T ss_pred             cccceeEEEecCCceEEEEecCC-ceEEEEEeecC
Confidence                  12234455656655555 44567876433

>KOG4328 consensus WD40 protein [Function unknown]

Probab=98.69  E-value=1.7e-07  Score=93.67  Aligned_cols=99  Identities=12%  Similarity=0.141  Sum_probs=77.8

Q ss_pred             CEEEEEECCCcEEEEcCC--C---ceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc-CCceeEEEe----cCC
Q 008510            4 VGIISASHDCTIRLWALT--G---QVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK-DGVCVQSIE----HPG   71 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~~--g---~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd-~~~~~~~l~----h~~   71 (563)
                      +.+++|..-|+|-+||+.  +   .-+..+..|...|.++.|+|.+  ++.+.|.||++|.-| .+.....+.    ...
T Consensus       201 ~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~  280 (498)
T KOG4328|consen  201 KLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNI  280 (498)
T ss_pred             eEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccce
Confidence            578999999999999992  2   3456677899999999999976  899999999999999 444333222    223


Q ss_pred             cEEEEEEccCCc-EEEEeCCCcEEEEEcCCCc
Q 008510           72 CVWDAKFLENGD-IVTACSDGVTRIWTVHSDK  102 (563)
Q Consensus        72 ~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~  102 (563)
                      .+.++.|+.+.. ++.|..=|...+||++++.
T Consensus       281 ~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~  312 (498)
T KOG4328|consen  281 WFSSLDFSAESRSVLFGDNVGNFNVIDLRTDG  312 (498)
T ss_pred             eeeeccccCCCccEEEeecccceEEEEeecCC
Confidence            667777777655 7888877899999999876

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.68  E-value=8.2e-08  Score=105.74  Aligned_cols=198  Identities=16%  Similarity=0.220  Sum_probs=121.0

Q ss_pred             ECCCcEEEEcC---CCc----eeEEEecCCCcEEEEEEcCCC-----eEEEEeCCCcEEEEc-C----Cc---eeEEEe-
Q 008510           10 SHDCTIRLWAL---TGQ----VLMEMVGHTAIVYSIDSHASG-----LIVSGSEDRFAKIWK-D----GV---CVQSIE-   68 (563)
Q Consensus        10 s~DgtIrlWd~---~g~----~i~~l~gH~~~V~~v~~~p~g-----~l~s~s~D~tvriWd-~----~~---~~~~l~-   68 (563)
                      |.+.++-+|.+   +.+    .+..+. -....+.++|.+.|     .++.|.+||.|-+|| .    +.   .+.+.. 
T Consensus        36 st~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~  114 (1049)
T KOG0307|consen   36 STSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSK  114 (1049)
T ss_pred             ccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcc
Confidence            45666777766   222    333433 23566899998754     489999999999999 2    22   233444 


Q ss_pred             cCCcEEEEEEccCCc--EEEEeCCCcEEEEEcCCCceec-------eeeecc--cccccceeEEeeccCCceEEEeCCCC
Q 008510           69 HPGCVWDAKFLENGD--IVTACSDGVTRIWTVHSDKVAD-------SLELEA--YASELSQYKLCRKKVGGLKLEDLPGL  137 (563)
Q Consensus        69 h~~~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~-------~~~~~~--~~~~v~~~~~~~~~~~~i~~~d~~~~  137 (563)
                      |++.|..+.|++.+.  +|+|+.||.|.|||+..-....       ..++..  ....+.....++...|.+.+||++..
T Consensus       115 h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~  194 (1049)
T KOG0307|consen  115 HTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK  194 (1049)
T ss_pred             cCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCC
Confidence            999999999999655  8999999999999998644211       111111  11224444556677789999999876


Q ss_pred             ceee-------------ecccCCCeEEEEecC-CC--eEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEE
Q 008510          138 EALQ-------------IPGTNAGQTKVVREG-DN--GVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDV  201 (563)
Q Consensus       138 ~~l~-------------~~g~~dg~~~l~~~~-~~--~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~v  201 (563)
                      +.+.             ..+|+++.++++-.. ++  .++-.||.+--         .     .-.++++||+. -|.++
T Consensus       195 ~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a---------s-----sP~k~~~~H~~-Gilsl  259 (1049)
T KOG0307|consen  195 KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA---------S-----SPLKILEGHQR-GILSL  259 (1049)
T ss_pred             CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc---------C-----Cchhhhccccc-ceeee
Confidence            3221             225666655554433 22  33556764211         1     12344556653 35666


Q ss_pred             Ec--CCCCeeeeecCCCCCChhHH
Q 008510          202 DI--GDGEPTRKLPYNRSDNPYDA  223 (563)
Q Consensus       202 d~--~dg~~~~~~~~n~~~~~w~~  223 (563)
                      +|  .|.+.+++..-|..+-.|+.
T Consensus       260 sWc~~D~~lllSsgkD~~ii~wN~  283 (1049)
T KOG0307|consen  260 SWCPQDPRLLLSSGKDNRIICWNP  283 (1049)
T ss_pred             ccCCCCchhhhcccCCCCeeEecC
Confidence            66  44455666666666666654

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.68  E-value=2.3e-07  Score=101.22  Aligned_cols=101  Identities=19%  Similarity=0.298  Sum_probs=69.6

Q ss_pred             CCCEEEEEECCCcEEEEcC--CC----ceeEEE---ecCC----CcEEEEEEcCC-CeEEEEeCCCcEEEEc--CCceeE
Q 008510            2 PGVGIISASHDCTIRLWAL--TG----QVLMEM---VGHT----AIVYSIDSHAS-GLIVSGSEDRFAKIWK--DGVCVQ   65 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~--~g----~~i~~l---~gH~----~~V~~v~~~p~-g~l~s~s~D~tvriWd--~~~~~~   65 (563)
                      |...+++||.||.||||+-  ++    +.+.-+   .++.    +.=.-++|... |.+.++|+-+.|||||  ...+.+
T Consensus      1122 D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~ 1201 (1387)
T KOG1517|consen 1122 DDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVA 1201 (1387)
T ss_pred             chhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEe
Confidence            4568999999999999986  32    233222   2221    11123566665 4788888889999999  445556


Q ss_pred             EEe--cCCcEEEEEEcc-CCc-EEEEeCCCcEEEEEcCCCc
Q 008510           66 SIE--HPGCVWDAKFLE-NGD-IVTACSDGVTRIWTVHSDK  102 (563)
Q Consensus        66 ~l~--h~~~V~~v~~~p-~g~-i~sgs~Dg~Irvwd~~~~~  102 (563)
                      .+.  ....|++++-.- .|+ |+.|..||.||+||.|..-
T Consensus      1202 diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~ 1242 (1387)
T KOG1517|consen 1202 DIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAP 1242 (1387)
T ss_pred             ecccCCCccceeecccccCCceEEEeecCCceEEeecccCC
Confidence            665  334677776653 466 8999999999999998653

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.68  E-value=4.1e-07  Score=93.76  Aligned_cols=100  Identities=21%  Similarity=0.367  Sum_probs=72.8

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEE---------------------
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKI---------------------   57 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvri---------------------   57 (563)
                      .|.++++||.||+||||.+ +|+|++++. -.+.|.||+|+|.+  .++..+.+.++.|                     
T Consensus       411 ~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~  489 (733)
T KOG0650|consen  411 SGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASA  489 (733)
T ss_pred             CcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcC
Confidence            3789999999999999999 999999876 45689999999976  2333333333444                     


Q ss_pred             ------------Ec-C------CceeEEEecCCcEEEEEEccCCc-EEEEeCC---CcEEEEEcCCCc
Q 008510           58 ------------WK-D------GVCVQSIEHPGCVWDAKFLENGD-IVTACSD---GVTRIWTVHSDK  102 (563)
Q Consensus        58 ------------Wd-~------~~~~~~l~h~~~V~~v~~~p~g~-i~sgs~D---g~Irvwd~~~~~  102 (563)
                                  |. .      ...--++.|+..|..|.|+..|+ |++.+-|   ..|.|.++...+
T Consensus       490 ~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~  557 (733)
T KOG0650|consen  490 PNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRK  557 (733)
T ss_pred             CCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccccc
Confidence                        33 0      00112455888999999999999 8777654   457888887665

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=98.67  E-value=1.4e-07  Score=96.58  Aligned_cols=58  Identities=28%  Similarity=0.456  Sum_probs=50.6

Q ss_pred             CCCEEEEEECCCcEEEEcC--CC---------ceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc
Q 008510            2 PGVGIISASHDCTIRLWAL--TG---------QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK   59 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~--~g---------~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd   59 (563)
                      .+..+++||-||+||.|++  ++         ....++.||++.|+.+++++.. ++++|+.|||||.|.
T Consensus       355 n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~  424 (577)
T KOG0642|consen  355 NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWE  424 (577)
T ss_pred             CceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeec
Confidence            4788999999999999965  21         2456789999999999999887 899999999999999

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.65  E-value=6.9e-08  Score=65.04  Aligned_cols=38  Identities=29%  Similarity=0.614  Sum_probs=34.8

Q ss_pred             CceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc
Q 008510           22 GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK   59 (563)
Q Consensus        22 g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd   59 (563)
                      |+++.++.+|.+.|++++|+|++ .++||+.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            46888999999999999999998 899999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=98.63  E-value=9.5e-08  Score=94.20  Aligned_cols=102  Identities=20%  Similarity=0.320  Sum_probs=88.7

Q ss_pred             CCCEEEEEECCCcEEEEcCC--------C---------ceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CC
Q 008510            2 PGVGIISASHDCTIRLWALT--------G---------QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DG   61 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~~--------g---------~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~   61 (563)
                      +|+.++||+.+|.|.+|...        +         ...+.+.+|...||.++|+|++ .+++++.|.++++||  .|
T Consensus        76 ~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G  155 (434)
T KOG1009|consen   76 DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAG  155 (434)
T ss_pred             CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccc
Confidence            57899999999999999753        2         2345678999999999999999 899999999999999  78


Q ss_pred             ceeEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCce
Q 008510           62 VCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKV  103 (563)
Q Consensus        62 ~~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~  103 (563)
                      .....+. |...|..++|.|-+. +++-+.|...+++.....+.
T Consensus       156 ~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~  199 (434)
T KOG1009|consen  156 QLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQV  199 (434)
T ss_pred             eeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeee
Confidence            8777777 888999999999888 99999999888888876653

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.58  E-value=1.9e-06  Score=84.26  Aligned_cols=102  Identities=15%  Similarity=0.267  Sum_probs=80.0

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEec---CCCcEEEEEEcCCC-eEEE-EeC-CCcEEEEc--CCceeEEEe-cCC
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVG---HTAIVYSIDSHASG-LIVS-GSE-DRFAKIWK--DGVCVQSIE-HPG   71 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~g---H~~~V~~v~~~p~g-~l~s-~s~-D~tvriWd--~~~~~~~l~-h~~   71 (563)
                      +-++++.|=.+. |.|||+ +-++++++..   |...+.++++++.+ +++- ++. -|.|.|||  +-+.+.++. |.+
T Consensus        96 Nr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~  174 (391)
T KOG2110|consen   96 NRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKG  174 (391)
T ss_pred             ccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCC
Confidence            456788887665 999999 7788887764   44556677666666 5543 333 37899999  677778888 999


Q ss_pred             cEEEEEEccCCc-EEEEeCCCc-EEEEEcCCCcee
Q 008510           72 CVWDAKFLENGD-IVTACSDGV-TRIWTVHSDKVA  104 (563)
Q Consensus        72 ~V~~v~~~p~g~-i~sgs~Dg~-Irvwd~~~~~~~  104 (563)
                      .+-|++|+++|. |||+|..|+ ||||++.+|+..
T Consensus       175 ~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl  209 (391)
T KOG2110|consen  175 PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKL  209 (391)
T ss_pred             ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEe
Confidence            999999999999 999999887 699999988743

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.54  E-value=1.1e-07  Score=95.22  Aligned_cols=100  Identities=15%  Similarity=0.226  Sum_probs=87.4

Q ss_pred             EEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCcee-EEEecCCcEEEEEEc
Q 008510            5 GIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCV-QSIEHPGCVWDAKFL   79 (563)
Q Consensus         5 ~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~-~~l~h~~~V~~v~~~   79 (563)
                      .|+++|..|-++--|+ .|+.+..+..-.+.+..++.+|-+ .+-.|...|+|.+|.  ..+.+ +.+.|.+.|.+|++.
T Consensus       223 LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~  302 (545)
T KOG1272|consen  223 LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVD  302 (545)
T ss_pred             eeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEEC
Confidence            4678888899999999 899999998888899999999977 888999999999999  44444 445599999999999


Q ss_pred             cCCc-EEEEeCCCcEEEEEcCCCcee
Q 008510           80 ENGD-IVTACSDGVTRIWTVHSDKVA  104 (563)
Q Consensus        80 p~g~-i~sgs~Dg~Irvwd~~~~~~~  104 (563)
                      ++|+ ++|.|.|..++|||+|.-...
T Consensus       303 ~~G~YMaTtG~Dr~~kIWDlR~~~ql  328 (545)
T KOG1272|consen  303 RGGRYMATTGLDRKVKIWDLRNFYQL  328 (545)
T ss_pred             CCCcEEeecccccceeEeeecccccc
Confidence            9999 999999999999999987633

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=98.53  E-value=1.3e-06  Score=84.04  Aligned_cols=100  Identities=17%  Similarity=0.314  Sum_probs=79.1

Q ss_pred             CCCEEEEEECCCcEEEEcC--CCce--eEE-----EecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCceeEEEe
Q 008510            2 PGVGIISASHDCTIRLWAL--TGQV--LME-----MVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIE   68 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~--~g~~--i~~-----l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~~~l~   68 (563)
                      ||..|+.| ....||++|+  .|+-  +.+     -.|..+.|.|++|+|..  .++.|+--.++-|+.  ....++.+.
T Consensus       169 DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg  247 (406)
T KOG2919|consen  169 DGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG  247 (406)
T ss_pred             CCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec
Confidence            57777755 5678999998  4532  221     22447889999999965  788888888888887  677788887


Q ss_pred             -cCCcEEEEEEccCCc-EEEEeC-CCcEEEEEcCCCc
Q 008510           69 -HPGCVWDAKFLENGD-IVTACS-DGVTRIWTVHSDK  102 (563)
Q Consensus        69 -h~~~V~~v~~~p~g~-i~sgs~-Dg~Irvwd~~~~~  102 (563)
                       |.+.|+.+.|.++|+ +.+|+. |..|-.||+|..+
T Consensus       248 gh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~  284 (406)
T KOG2919|consen  248 GHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR  284 (406)
T ss_pred             ccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc
Confidence             999999999999999 888765 7899999999776

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=98.52  E-value=3.5e-07  Score=95.11  Aligned_cols=177  Identities=12%  Similarity=0.147  Sum_probs=113.3

Q ss_pred             cEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceee
Q 008510           34 IVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLE  108 (563)
Q Consensus        34 ~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~  108 (563)
                      .|+.++|-||| .++-+. +..+.++|  +|..++++. |.+.|+||+|+.||+ +++|+.|..|-+|+..-.-..    
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L----   88 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL----   88 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee----
Confidence            79999999999 666554 34689999  899999999 999999999999999 999999999999997543211    


Q ss_pred             ecccccccceeEEe-------eccCCceEEEeCCCC---------ceeeecccCCCeEEEEecCCCeEEEEEecccceEE
Q 008510          109 LEAYASELSQYKLC-------RKKVGGLKLEDLPGL---------EALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWD  172 (563)
Q Consensus       109 ~~~~~~~v~~~~~~-------~~~~~~i~~~d~~~~---------~~l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~  172 (563)
                      -.+|.+.+.++.+.       ....+..-+|.....         .+.....+.||++.+.+..++.+. +-+....   
T Consensus        89 kYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIs-iRNk~gE---  164 (1081)
T KOG1538|consen   89 KYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTIS-IRNKNGE---  164 (1081)
T ss_pred             eeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEE-eecCCCC---
Confidence            12333444444332       122234555654322         122334778999988888875543 2221111   


Q ss_pred             EeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCC-----CeeeeecCCCCCChhHHHHHHHHh
Q 008510          173 KLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDG-----EPTRKLPYNRSDNPYDAADKWLLK  230 (563)
Q Consensus       173 ~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg-----~~~~~~~~n~~~~~w~~a~~f~~~  230 (563)
                                 ...+....|.....||+|.+ +..     ..+....++.+..-|...-+||.+
T Consensus       165 -----------ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk  217 (1081)
T KOG1538|consen  165 -----------EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGK  217 (1081)
T ss_pred             -----------cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecc
Confidence                       00112223444466788777 321     235666677777777777777664

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.51  E-value=3.6e-07  Score=90.74  Aligned_cols=66  Identities=20%  Similarity=0.456  Sum_probs=56.9

Q ss_pred             EEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEE-ecCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCc
Q 008510           36 YSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSI-EHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDK  102 (563)
Q Consensus        36 ~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l-~h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~  102 (563)
                      .+++|+++| .+++++.||++|||+  +-..+..+ .|.+.|.++.|+|||. +++-+.| ..+||+.+++-
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~  218 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA  218 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCc
Confidence            578999998 999999999999999  44433333 3889999999999998 8999999 99999999984

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.49  E-value=6.7e-06  Score=91.45  Aligned_cols=217  Identities=15%  Similarity=0.119  Sum_probs=123.4

Q ss_pred             CCEEEEEECCCcEEEEcC---CC-----ceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CC------ceeEE
Q 008510            3 GVGIISASHDCTIRLWAL---TG-----QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DG------VCVQS   66 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~---~g-----~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~------~~~~~   66 (563)
                      +.+|+|||.||+||+|+.   .|     ++..++.--.+.++++.+.+.| .+|.++.||.|++.+ +.      .+.+.
T Consensus      1061 ~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ 1140 (1431)
T KOG1240|consen 1061 TSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQV 1140 (1431)
T ss_pred             CceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeee
Confidence            479999999999999997   23     2444555456789999999988 899999999999998 32      11122


Q ss_pred             E--e--cCC-cEEEEEEccC--C-cEEEEeCCCcEEEEEcCCCceeceeeec-------ccc-cccceeEEeeccCCceE
Q 008510           67 I--E--HPG-CVWDAKFLEN--G-DIVTACSDGVTRIWTVHSDKVADSLELE-------AYA-SELSQYKLCRKKVGGLK  130 (563)
Q Consensus        67 l--~--h~~-~V~~v~~~p~--g-~i~sgs~Dg~Irvwd~~~~~~~~~~~~~-------~~~-~~v~~~~~~~~~~~~i~  130 (563)
                      .  .  ..+ .|..-+|...  . .++.+..-+.|..||+++...+-.....       .+. +.-.+..+.+...|.+.
T Consensus      1141 ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~ 1220 (1431)
T KOG1240|consen 1141 RIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLV 1220 (1431)
T ss_pred             ecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEE
Confidence            1  1  223 3444444432  2 2678888899999999986533211111       111 11123344567779999


Q ss_pred             EEeCCCCceeeeccc---------------CCCeEEEEecC-CCeEEEEEecccceEEEeCcEe-eCC-----CCC--CC
Q 008510          131 LEDLPGLEALQIPGT---------------NAGQTKVVREG-DNGVAYSWDMKEQKWDKLGEVV-DGP-----DDG--MN  186 (563)
Q Consensus       131 ~~d~~~~~~l~~~g~---------------~dg~~~l~~~~-~~~~~~~wd~~~~~w~~~g~v~-~~~-----~~~--~~  186 (563)
                      +||++-+..+...-+               +...+.+..+. ..+.+-.|++..|....+-..- +.+     ...  ..
T Consensus      1221 lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~ 1300 (1431)
T KOG1240|consen 1221 LWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDAR 1300 (1431)
T ss_pred             EEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCC
Confidence            999985543322211               11123333333 3345678888777533221110 000     000  00


Q ss_pred             ceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHH
Q 008510          187 RPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAA  224 (563)
Q Consensus       187 ~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a  224 (563)
                      +   .+.  -......+ +.+...+++.-|..++.|+.+
T Consensus      1301 k---p~~--~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1301 K---PDS--LAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred             C---CCc--ccceeeecccCCceeeecCCccceeeccCC
Confidence            0   010  11123334 334457888888889988864

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=98.48  E-value=1.5e-05  Score=82.17  Aligned_cols=101  Identities=28%  Similarity=0.599  Sum_probs=79.2

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCc-eeEEEecCCC-cEEEEEE-cCCC--eEEEEeC-CCcEEEEc-C--CceeEEEe-cC
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQ-VLMEMVGHTA-IVYSIDS-HASG--LIVSGSE-DRFAKIWK-D--GVCVQSIE-HP   70 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~-~i~~l~gH~~-~V~~v~~-~p~g--~l~s~s~-D~tvriWd-~--~~~~~~l~-h~   70 (563)
                      .+..++.++.|+.+.+|+. .+. .+..+.++.. .+..+.+ ++++  .+..++. |+.+++|+ .  ......+. |.
T Consensus        76 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  155 (466)
T COG2319          76 DGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHS  155 (466)
T ss_pred             CCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCc
Confidence            3567888889999999999 444 7788887554 7777777 7766  3444445 99999999 4  46666666 88


Q ss_pred             CcEEEEEEccCCc-EEEEeC-CCcEEEEEcCCCc
Q 008510           71 GCVWDAKFLENGD-IVTACS-DGVTRIWTVHSDK  102 (563)
Q Consensus        71 ~~V~~v~~~p~g~-i~sgs~-Dg~Irvwd~~~~~  102 (563)
                      ..|.+++|+|++. +++++. |+.+++|+...++
T Consensus       156 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (466)
T COG2319         156 ESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK  189 (466)
T ss_pred             ccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc
Confidence            9999999999998 777775 9999999999854

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.45  E-value=1.6e-06  Score=94.90  Aligned_cols=146  Identities=13%  Similarity=0.218  Sum_probs=100.5

Q ss_pred             CCCEEEEEECCCcEEEEcC--C--CceeEEEecCCCc--EEEEEEcCCC--eEEEEeCCCcEEEEc-CCceeEEE----e
Q 008510            2 PGVGIISASHDCTIRLWAL--T--GQVLMEMVGHTAI--VYSIDSHASG--LIVSGSEDRFAKIWK-DGVCVQSI----E   68 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~--~--g~~i~~l~gH~~~--V~~v~~~p~g--~l~s~s~D~tvriWd-~~~~~~~l----~   68 (563)
                      .|+.++.|-.||.||+||.  .  .-.+..++.|+..  |..+.+.+.|  .++||+.||.|++|| ......++    .
T Consensus      1220 ~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~ 1299 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA 1299 (1387)
T ss_pred             CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeee
Confidence            3789999999999999998  2  2367788899988  9999999988  699999999999999 44222222    1


Q ss_pred             cC--C-cEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceeeecc
Q 008510           69 HP--G-CVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPG  144 (563)
Q Consensus        69 h~--~-~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g  144 (563)
                      |-  + .++++..++..+ ||+|+. +.|+||++...+.-.   ++..      -.+.+...+.+....++....+...|
T Consensus      1300 ~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~---~k~n------~~F~~q~~gs~scL~FHP~~~llAaG 1369 (1387)
T KOG1517|consen 1300 HWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNI---IKYN------PGFMGQRIGSVSCLAFHPHRLLLAAG 1369 (1387)
T ss_pred             ccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcc---cccC------cccccCcCCCcceeeecchhHhhhhc
Confidence            33  4 499999999988 777777 999999998765211   1100      11122222333344445555555666


Q ss_pred             cCCCeEEEEecCC
Q 008510          145 TNAGQTKVVREGD  157 (563)
Q Consensus       145 ~~dg~~~l~~~~~  157 (563)
                      ..|..+.++.+.+
T Consensus      1370 ~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1370 SADSTVSIYSCEK 1382 (1387)
T ss_pred             cCCceEEEeecCC
Confidence            6666666665543

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=98.44  E-value=3.3e-05  Score=78.97  Aligned_cols=210  Identities=13%  Similarity=0.115  Sum_probs=118.0

Q ss_pred             EEEEEECCCcEEEEcC--CCc--eeEEEecCCCcEEEEEEcCCC-eEEE-EeCCCcEEEEc-C--Cce--eEEEecCCcE
Q 008510            5 GIISASHDCTIRLWAL--TGQ--VLMEMVGHTAIVYSIDSHASG-LIVS-GSEDRFAKIWK-D--GVC--VQSIEHPGCV   73 (563)
Q Consensus         5 ~l~s~s~DgtIrlWd~--~g~--~i~~l~gH~~~V~~v~~~p~g-~l~s-~s~D~tvriWd-~--~~~--~~~l~h~~~V   73 (563)
                      .+++.+.|+.|++|++  +|+  .++++. +.+....++++|++ .++. +..++.|.+|+ +  +..  +..+...+..
T Consensus         4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p   82 (330)
T PRK11028          4 VYIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSP   82 (330)
T ss_pred             EEEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCc
Confidence            3455577999999999  354  555554 34556788999998 5544 45688899998 3  332  2333344567


Q ss_pred             EEEEEccCCc-EEEEe-CCCcEEEEEcCCCc-ee-ceeeecc----ccc---ccceeE-EeeccCCceEEEeCCCCcee-
Q 008510           74 WDAKFLENGD-IVTAC-SDGVTRIWTVHSDK-VA-DSLELEA----YAS---ELSQYK-LCRKKVGGLKLEDLPGLEAL-  140 (563)
Q Consensus        74 ~~v~~~p~g~-i~sgs-~Dg~Irvwd~~~~~-~~-~~~~~~~----~~~---~v~~~~-~~~~~~~~i~~~d~~~~~~l-  140 (563)
                      ..++++|+|+ +++++ .++.|.+|++.+.. .. ....+..    +..   .-.... .+...++.|.+||+.....+ 
T Consensus        83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~  162 (330)
T PRK11028         83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV  162 (330)
T ss_pred             eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccc
Confidence            7899999998 65554 48999999997432 11 1111111    110   011233 34455688999998653211 


Q ss_pred             ----------------eecccCCCeEEEEecCCCeEEEEEecc--cceEEEeCcEeeCCCCCCCceeecCcccCcEEEEE
Q 008510          141 ----------------QIPGTNAGQTKVVREGDNGVAYSWDMK--EQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVD  202 (563)
Q Consensus       141 ----------------~~~g~~dg~~~l~~~~~~~~~~~wd~~--~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd  202 (563)
                                      ....+++|.+..+.+.....+..|+..  ++.+..+..+...+..      +.+.  .+...+.
T Consensus       163 ~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~------~~~~--~~~~~i~  234 (330)
T PRK11028        163 AQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPAD------FSDT--RWAADIH  234 (330)
T ss_pred             ccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCc------CCCC--ccceeEE
Confidence                            112456777665655544555666654  3344333222111100      1111  2334566


Q ss_pred             c-CCCCeeeeec-CCCCCChhHH
Q 008510          203 I-GDGEPTRKLP-YNRSDNPYDA  223 (563)
Q Consensus       203 ~-~dg~~~~~~~-~n~~~~~w~~  223 (563)
                      + ++|+.++... .+..+.+|++
T Consensus       235 ~~pdg~~lyv~~~~~~~I~v~~i  257 (330)
T PRK11028        235 ITPDGRHLYACDRTASLISVFSV  257 (330)
T ss_pred             ECCCCCEEEEecCCCCeEEEEEE
Confidence            6 7777777663 2344556655

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=98.44  E-value=9.9e-06  Score=76.01  Aligned_cols=87  Identities=16%  Similarity=0.193  Sum_probs=63.5

Q ss_pred             EEEEcC--CCceeEEEec-CCCcEEEEEEcCCC-eEE--EEeCCCcEEEEc-CCceeEEEecCCcEEEEEEccCCc-EEE
Q 008510           15 IRLWAL--TGQVLMEMVG-HTAIVYSIDSHASG-LIV--SGSEDRFAKIWK-DGVCVQSIEHPGCVWDAKFLENGD-IVT   86 (563)
Q Consensus        15 IrlWd~--~g~~i~~l~g-H~~~V~~v~~~p~g-~l~--s~s~D~tvriWd-~~~~~~~l~h~~~V~~v~~~p~g~-i~s   86 (563)
                      ..+|.+  .+..+..+.- +.+.|.+++|+|+| .|+  +|..++.|.+|| .++.+..+. ...+..|.|+|+|+ +++
T Consensus        39 ~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~-~~~~n~i~wsP~G~~l~~  117 (194)
T PF08662_consen   39 FELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFG-TQPRNTISWSPDGRFLVL  117 (194)
T ss_pred             EEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeec-CCCceEEEECCCCCEEEE
Confidence            444544  3444444443 34579999999999 544  345678999999 877777765 45778999999999 777


Q ss_pred             EeCC---CcEEEEEcCCCc
Q 008510           87 ACSD---GVTRIWTVHSDK  102 (563)
Q Consensus        87 gs~D---g~Irvwd~~~~~  102 (563)
                      |+.+   |.+.+||.++.+
T Consensus       118 ~g~~n~~G~l~~wd~~~~~  136 (194)
T PF08662_consen  118 AGFGNLNGDLEFWDVRKKK  136 (194)
T ss_pred             EEccCCCcEEEEEECCCCE
Confidence            7654   669999999766

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=98.44  E-value=2.9e-06  Score=83.31  Aligned_cols=80  Identities=13%  Similarity=0.276  Sum_probs=68.8

Q ss_pred             eEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--------CCceeEEEe--cCCcEEEEEEccCCc-EEEEeCCCc
Q 008510           25 LMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--------DGVCVQSIE--HPGCVWDAKFLENGD-IVTACSDGV   92 (563)
Q Consensus        25 i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--------~~~~~~~l~--h~~~V~~v~~~p~g~-i~sgs~Dg~   92 (563)
                      .+-+.+|.++|..+.|+.++ .+++||.|..+++|.        ..+.++...  |...|.|++|....+ +.+|+.+++
T Consensus        49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~  128 (609)
T KOG4227|consen   49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT  128 (609)
T ss_pred             hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence            34467999999999999999 899999999999998        346777777  556899999988777 899999999


Q ss_pred             EEEEEcCCCcee
Q 008510           93 TRIWTVHSDKVA  104 (563)
Q Consensus        93 Irvwd~~~~~~~  104 (563)
                      |-.-|+.+.+.+
T Consensus       129 VI~HDiEt~qsi  140 (609)
T KOG4227|consen  129 VIKHDIETKQSI  140 (609)
T ss_pred             eEeeecccceee
Confidence            999999988743

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.40  E-value=5.3e-07  Score=89.14  Aligned_cols=104  Identities=16%  Similarity=0.362  Sum_probs=82.2

Q ss_pred             EECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe--cCCcEEEEEEccCC
Q 008510            9 ASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE--HPGCVWDAKFLENG   82 (563)
Q Consensus         9 ~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~--h~~~V~~v~~~p~g   82 (563)
                      .+.+..+.+|+. +|.+. .+-||-+.++.|+|+||+ .++++..|..|||=.  ....+.++-  |+.-|..++..++-
T Consensus       128 agD~~~~di~s~~~~~~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~  206 (390)
T KOG3914|consen  128 AGDVYSFDILSADSGRCE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY  206 (390)
T ss_pred             cCCceeeeeecccccCcc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc
Confidence            445556666666 34443 456999999999999999 999999999999977  444455554  99999999999886


Q ss_pred             cEEEEeCCCcEEEEEcCCCceeceeeecccc
Q 008510           83 DIVTACSDGVTRIWTVHSDKVADSLELEAYA  113 (563)
Q Consensus        83 ~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~  113 (563)
                      .+++||.|+++|+||+++++..+...+..+.
T Consensus       207 ~LlS~sGD~tlr~Wd~~sgk~L~t~dl~s~~  237 (390)
T KOG3914|consen  207 LLLSGSGDKTLRLWDITSGKLLDTCDLSSLV  237 (390)
T ss_pred             eeeecCCCCcEEEEecccCCcccccchhHhh
Confidence            6999999999999999999976555554443

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.39  E-value=2.7e-06  Score=85.92  Aligned_cols=220  Identities=16%  Similarity=0.155  Sum_probs=137.3

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEE-ecCCCcEEEEEEcCCC---eEEEEeCCCcEEEEc---CCceeEEEe---cC
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEM-VGHTAIVYSIDSHASG---LIVSGSEDRFAKIWK---DGVCVQSIE---HP   70 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l-~gH~~~V~~v~~~p~g---~l~s~s~D~tvriWd---~~~~~~~l~---h~   70 (563)
                      .|+.++|||.|..|.+||+ .+.....+ .||...|..-.|.|..   -+++++.||.||+=.   ++.+..+..   |.
T Consensus       153 ~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~  232 (559)
T KOG1334|consen  153 RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHE  232 (559)
T ss_pred             cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceeccccc
Confidence            4789999999999999999 66655444 5899999998999963   699999999999877   555544433   99


Q ss_pred             CcEEEEEEccCCc--EEEEeCCCcEEEEEcCCCceeceeeecccccc--ccee-----------EEeeccCCceEEEeCC
Q 008510           71 GCVWDAKFLENGD--IVTACSDGVTRIWTVHSDKVADSLELEAYASE--LSQY-----------KLCRKKVGGLKLEDLP  135 (563)
Q Consensus        71 ~~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~--v~~~-----------~~~~~~~~~i~~~d~~  135 (563)
                      +.|.-++.-|+..  +.+++.|+.+.-+|++.+..+.....+.....  |.-.           ...+..+.-.+++|.+
T Consensus       233 g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R  312 (559)
T KOG1334|consen  233 GPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQR  312 (559)
T ss_pred             CccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhccc
Confidence            9999999999876  99999999999999998875543332221111  2211           1123344456666665


Q ss_pred             CCceeeecc-------------cCCCeEEEEecCCCe---------EEEEEecccceEEEeCcE-ee-CCCCCCCceeec
Q 008510          136 GLEALQIPG-------------TNAGQTKVVREGDNG---------VAYSWDMKEQKWDKLGEV-VD-GPDDGMNRPILD  191 (563)
Q Consensus       136 ~~~~l~~~g-------------~~dg~~~l~~~~~~~---------~~~~wd~~~~~w~~~g~v-~~-~~~~~~~~~~~~  191 (563)
                      ....-...|             .+-+.+.++.+.+++         -+|.+...-+    .|.- .. .......++.|+
T Consensus       313 ~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~----~G~~p~~~s~~~~~~k~vYK  388 (559)
T KOG1334|consen  313 RIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMG----DGSEPDPSSPREQYVKRVYK  388 (559)
T ss_pred             chhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccc----cCCCCCCCcchhhccchhhc
Confidence            321110000             111222233332221         1223311100    0100 00 000112466799


Q ss_pred             Cccc-CcEEEEEc--CCCCeeeeecCCCCCChhHHHH
Q 008510          192 GIQY-DYVFDVDI--GDGEPTRKLPYNRSDNPYDAAD  225 (563)
Q Consensus       192 g~~~-d~v~~vd~--~dg~~~~~~~~n~~~~~w~~a~  225 (563)
                      ||.. ..|-.|.|  |..+.+.+++--+.+-+|+-..
T Consensus       389 GHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t  425 (559)
T KOG1334|consen  389 GHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKT  425 (559)
T ss_pred             ccccccccceeeeccCccceEEecCccceEEEEecch
Confidence            9854 35778999  6688899999888899998543

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=98.38  E-value=9.8e-06  Score=79.19  Aligned_cols=98  Identities=18%  Similarity=0.293  Sum_probs=74.6

Q ss_pred             EEEEECCCcEEEEcCCCceeEEEec-CCCcEEEEEEcCCC--eEEEEeCCCcEEEEc-C--C-----------ceeEEEe
Q 008510            6 IISASHDCTIRLWALTGQVLMEMVG-HTAIVYSIDSHASG--LIVSGSEDRFAKIWK-D--G-----------VCVQSIE   68 (563)
Q Consensus         6 l~s~s~DgtIrlWd~~g~~i~~l~g-H~~~V~~v~~~p~g--~l~s~s~D~tvriWd-~--~-----------~~~~~l~   68 (563)
                      |+++.+|-+||+|+-+-++...++. .+..|.|++|-|.+  .++.|+.-| |.||. +  .           .+.+.++
T Consensus       113 fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~  191 (445)
T KOG2139|consen  113 FAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQ  191 (445)
T ss_pred             hhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhhee
Confidence            6889999999999995465555553 34579999999976  677777654 88997 1  1           2345556


Q ss_pred             cCC--cEEEEEEccCCc-EEEEeC-CCcEEEEEcCCCcee
Q 008510           69 HPG--CVWDAKFLENGD-IVTACS-DGVTRIWTVHSDKVA  104 (563)
Q Consensus        69 h~~--~V~~v~~~p~g~-i~sgs~-Dg~Irvwd~~~~~~~  104 (563)
                      |++  .|.++.|.+||. +++++- |..|+|||.+++...
T Consensus       192 ~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~  231 (445)
T KOG2139|consen  192 DPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKI  231 (445)
T ss_pred             CCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcc
Confidence            555  899999999998 777765 578999999998744

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=98.36  E-value=5.5e-06  Score=85.28  Aligned_cols=98  Identities=21%  Similarity=0.393  Sum_probs=79.8

Q ss_pred             EEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-------cCCc--
Q 008510            6 IISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-------HPGC--   72 (563)
Q Consensus         6 l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-------h~~~--   72 (563)
                      +.+++....|.-.++ .|+.+..|.-..+.+++|.+++.. .+++|++||.|-.||  +.....++.       |++.  
T Consensus       148 ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~  227 (703)
T KOG2321|consen  148 LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDA  227 (703)
T ss_pred             EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccc
Confidence            344445556788888 899999998888999999999976 889999999999999  444333432       4443  


Q ss_pred             ---EEEEEEccCCc-EEEEeCCCcEEEEEcCCCce
Q 008510           73 ---VWDAKFLENGD-IVTACSDGVTRIWTVHSDKV  103 (563)
Q Consensus        73 ---V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~  103 (563)
                         |++++|..+|- +++|.++|.|.+||+++.+.
T Consensus       228 ~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p  262 (703)
T KOG2321|consen  228 APSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP  262 (703)
T ss_pred             cCcceEEEecCCceeEEeeccCCcEEEEEcccCCc
Confidence               99999999997 99999999999999999873

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.35  E-value=9.9e-07  Score=88.51  Aligned_cols=92  Identities=21%  Similarity=0.347  Sum_probs=77.6

Q ss_pred             EEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEEEcc
Q 008510            5 GIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKFLE   80 (563)
Q Consensus         5 ~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~~~p   80 (563)
                      .+-.|...|+|.+|+. ..+++..+-.|.++|.+|++.++| +++|+|.|+.|+|||  ....++++..+.....++++.
T Consensus       265 Vih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sq  344 (545)
T KOG1272|consen  265 VIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQ  344 (545)
T ss_pred             eEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccc
Confidence            4667888999999999 778888888999999999999999 999999999999999  555666666667888899988


Q ss_pred             CCcEEEEeCCCcEEEEE
Q 008510           81 NGDIVTACSDGVTRIWT   97 (563)
Q Consensus        81 ~g~i~sgs~Dg~Irvwd   97 (563)
                      .|.+|. |....|.+|.
T Consensus       345 kglLA~-~~G~~v~iw~  360 (545)
T KOG1272|consen  345 KGLLAL-SYGDHVQIWK  360 (545)
T ss_pred             ccceee-ecCCeeeeeh
Confidence            876554 4556789995

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.32  E-value=0.00013  Score=77.76  Aligned_cols=90  Identities=12%  Similarity=0.156  Sum_probs=68.6

Q ss_pred             cEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeC---CCcEEEEc-CCceeEEEe-cCCcEEEEEEccCCc-EE-
Q 008510           14 TIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSE---DRFAKIWK-DGVCVQSIE-HPGCVWDAKFLENGD-IV-   85 (563)
Q Consensus        14 tIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~---D~tvriWd-~~~~~~~l~-h~~~V~~v~~~p~g~-i~-   85 (563)
                      .|.+||.+|...+.+..|...+.+.+|+||| .++..+.   +..|.+|| .+...+.+. +++.+.+.+|+|||+ |+ 
T Consensus       183 ~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~  262 (435)
T PRK05137        183 RLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVM  262 (435)
T ss_pred             EEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEE
Confidence            6888888888778888899999999999999 6666553   46799999 333334454 677888999999998 54 


Q ss_pred             EEeCCCc--EEEEEcCCCce
Q 008510           86 TACSDGV--TRIWTVHSDKV  103 (563)
Q Consensus        86 sgs~Dg~--Irvwd~~~~~~  103 (563)
                      +.+.++.  |++||+.++..
T Consensus       263 ~~~~~g~~~Iy~~d~~~~~~  282 (435)
T PRK05137        263 SLSQGGNTDIYTMDLRSGTT  282 (435)
T ss_pred             EEecCCCceEEEEECCCCce
Confidence            5555655  77778887753

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=98.31  E-value=1.6e-05  Score=85.24  Aligned_cols=211  Identities=11%  Similarity=0.047  Sum_probs=124.7

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCce--eE----EEecCCCcEEEEEEcCCC---eEEEEeCCCcEEEEc-C-------Cce
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQV--LM----EMVGHTAIVYSIDSHASG---LIVSGSEDRFAKIWK-D-------GVC   63 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~--i~----~l~gH~~~V~~v~~~p~g---~l~s~s~D~tvriWd-~-------~~~   63 (563)
                      +..+++.|..+|.|-+||+ .+..  ..    ....|..+|..+.|..+-   .|+|+|.||.|..|+ +       +.+
T Consensus       254 ~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~  333 (555)
T KOG1587|consen  254 DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLL  333 (555)
T ss_pred             CcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcc
Confidence            4578999999999999999 3221  11    234688999999997653   599999999999999 1       111


Q ss_pred             eEEEe------c-CCcEEEEEEccCCc--EEEEeCCCcEEEEEcCCCceecee------eecccccccc--------eeE
Q 008510           64 VQSIE------H-PGCVWDAKFLENGD--IVTACSDGVTRIWTVHSDKVADSL------ELEAYASELS--------QYK  120 (563)
Q Consensus        64 ~~~l~------h-~~~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~------~~~~~~~~v~--------~~~  120 (563)
                      .....      + ...+.+++|.+...  ++.|+.+|.|..=+....+.....      ....|.+.+.        ...
T Consensus       334 ~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~  413 (555)
T KOG1587|consen  334 LESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKN  413 (555)
T ss_pred             cccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccce
Confidence            11111      1 23799999998654  999999999988555544422211      1112222221        122


Q ss_pred             EeeccCCceEEEeCC-CCc-----------eeeecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCce
Q 008510          121 LCRKKVGGLKLEDLP-GLE-----------ALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRP  188 (563)
Q Consensus       121 ~~~~~~~~i~~~d~~-~~~-----------~l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~  188 (563)
                      +....|..+++|... ...           +.....++-....++....++.+++||.....-.++-           ++
T Consensus       414 fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~-----------s~  482 (555)
T KOG1587|consen  414 FLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVL-----------SQ  482 (555)
T ss_pred             eeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcc-----------cc
Confidence            333448899999875 211           1112234443344445555677788886554322221           11


Q ss_pred             eecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHHHH
Q 008510          189 ILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAADK  226 (563)
Q Consensus       189 ~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~~  226 (563)
                      .+.   .-....+-+ ++|+.+..+.+++++.+|++.+.
T Consensus       483 ~~~---~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  483 KVC---SPALTRVRWSPNGKLLAVGDANGTTHILKLSES  518 (555)
T ss_pred             ccc---ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence            111   122333444 45777777777777777776544

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=98.31  E-value=1.6e-05  Score=77.77  Aligned_cols=133  Identities=20%  Similarity=0.241  Sum_probs=89.5

Q ss_pred             CCEEEEEECCCcEEEEcC--C---Ccee----------EEEecCCCcEEEEEEcCCC-eEEEEeCC-CcEEEEc--CCce
Q 008510            3 GVGIISASHDCTIRLWAL--T---GQVL----------MEMVGHTAIVYSIDSHASG-LIVSGSED-RFAKIWK--DGVC   63 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~--~---g~~i----------~~l~gH~~~V~~v~~~p~g-~l~s~s~D-~tvriWd--~~~~   63 (563)
                      +..|+.|+..| |.+|..  +   ++.+          ....|| .+|.++.|.+|| .+++++-+ ..++|||  ++.+
T Consensus       153 aselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~  230 (445)
T KOG2139|consen  153 ASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQK  230 (445)
T ss_pred             cceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCc
Confidence            45677777666 899987  2   2222          123455 679999999999 88887765 6799999  5555


Q ss_pred             eEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceee
Q 008510           64 VQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQ  141 (563)
Q Consensus        64 ~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~  141 (563)
                      +.... ..+.+.-+.|+|||+ +.++.-|+..|+|.......                         -.-|-+..+.+..
T Consensus       231 ~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt-------------------------~erw~lgsgrvqt  285 (445)
T KOG2139|consen  231 IPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWT-------------------------KERWILGSGRVQT  285 (445)
T ss_pred             ccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccce-------------------------ecceeccCCceee
Confidence            54443 566899999999999 88888999999996543320                         1113333333334


Q ss_pred             ecccCCCeEEEEecCCCeEEE
Q 008510          142 IPGTNAGQTKVVREGDNGVAY  162 (563)
Q Consensus       142 ~~g~~dg~~~l~~~~~~~~~~  162 (563)
                      ...+++|.+.++.......+|
T Consensus       286 acWspcGsfLLf~~sgsp~ly  306 (445)
T KOG2139|consen  286 ACWSPCGSFLLFACSGSPRLY  306 (445)
T ss_pred             eeecCCCCEEEEEEcCCceEE
Confidence            446677777766665545544

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.31  E-value=1.7e-06  Score=58.11  Aligned_cols=37  Identities=27%  Similarity=0.737  Sum_probs=34.0

Q ss_pred             CceeEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEE
Q 008510           61 GVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWT   97 (563)
Q Consensus        61 ~~~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd   97 (563)
                      +++++++. |...|++++|+|++. +++|+.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            35788888 999999999999988 99999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=98.30  E-value=0.00026  Score=72.45  Aligned_cols=99  Identities=16%  Similarity=0.221  Sum_probs=67.1

Q ss_pred             CCCEEEEE-ECCCcEEEEcCC--Cce--eEEEecCCCcEEEEEEcCCC-eEEEEe-CCCcEEEEc-C--C---ceeEEEe
Q 008510            2 PGVGIISA-SHDCTIRLWALT--GQV--LMEMVGHTAIVYSIDSHASG-LIVSGS-EDRFAKIWK-D--G---VCVQSIE   68 (563)
Q Consensus         2 ~g~~l~s~-s~DgtIrlWd~~--g~~--i~~l~gH~~~V~~v~~~p~g-~l~s~s-~D~tvriWd-~--~---~~~~~l~   68 (563)
                      +|++|+.+ ..++.|.+|+++  |..  +.+.. ..+....++++|+| .+++++ .++.|.+|+ +  +   +.++.+.
T Consensus        45 d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~  123 (330)
T PRK11028         45 DKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE  123 (330)
T ss_pred             CCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc
Confidence            46776555 458889999983  432  22222 23346789999999 555554 478999998 3  3   2334343


Q ss_pred             cCCcEEEEEEccCCc-E-EEEeCCCcEEEEEcCCC
Q 008510           69 HPGCVWDAKFLENGD-I-VTACSDGVTRIWTVHSD  101 (563)
Q Consensus        69 h~~~V~~v~~~p~g~-i-~sgs~Dg~Irvwd~~~~  101 (563)
                      +.....+++++|+|+ + ++...++.|++||+++.
T Consensus       124 ~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~  158 (330)
T PRK11028        124 GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD  158 (330)
T ss_pred             CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence            434577889999998 5 55566799999999763

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=98.27  E-value=7.2e-07  Score=83.52  Aligned_cols=58  Identities=26%  Similarity=0.335  Sum_probs=43.6

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK   59 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd   59 (563)
                      |++.+||+|+|+.||+|+. +..++..++-|.+.|.+++|+|+. .++++|.|.+|-+|+
T Consensus       262 D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWk  321 (323)
T KOG0322|consen  262 DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWK  321 (323)
T ss_pred             CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeee
Confidence            5677777777777777777 777777777777777777777774 777777777777775

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.25  E-value=0.00014  Score=75.28  Aligned_cols=167  Identities=13%  Similarity=0.121  Sum_probs=104.7

Q ss_pred             CEE-EEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEEE
Q 008510            4 VGI-ISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKF   78 (563)
Q Consensus         4 ~~l-~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~~   78 (563)
                      +++ ++-..++.|.+.|. +.+.+.++......-..+.++||| ++..++.|+.|.++|  +.+.+.++.......++++
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~   85 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAV   85 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEE
Confidence            455 45667899999999 789999998665554567899999 777788999999999  8889999987678899999


Q ss_pred             ccCCc-EEEE-eCCCcEEEEEcCCCceeceeeeccccc-------------ccc-eeEEeeccCCceEEEeCCCCceeee
Q 008510           79 LENGD-IVTA-CSDGVTRIWTVHSDKVADSLELEAYAS-------------ELS-QYKLCRKKVGGLKLEDLPGLEALQI  142 (563)
Q Consensus        79 ~p~g~-i~sg-s~Dg~Irvwd~~~~~~~~~~~~~~~~~-------------~v~-~~~~~~~~~~~i~~~d~~~~~~l~~  142 (563)
                      ++||+ ++++ -.++.+.++|.++.+............             ... .+.++....+.|.+-|......+..
T Consensus        86 s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~  165 (369)
T PF02239_consen   86 SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV  165 (369)
T ss_dssp             --TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEE
T ss_pred             cCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccce
Confidence            99999 5544 468999999999887554433322211             111 1333444456666666654432211


Q ss_pred             ------------cccCCCeEEEEecCCCeEEEEEecccce
Q 008510          143 ------------PGTNAGQTKVVREGDNGVAYSWDMKEQK  170 (563)
Q Consensus       143 ------------~g~~dg~~~l~~~~~~~~~~~wd~~~~~  170 (563)
                                  ...++|.+.+........+..+|..++.
T Consensus       166 ~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k  205 (369)
T PF02239_consen  166 TTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK  205 (369)
T ss_dssp             EEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred             eeecccccccccccCcccceeeecccccceeEEEeeccce
Confidence                        1345666666644433455566666554

...

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.22  E-value=6.5e-05  Score=79.79  Aligned_cols=96  Identities=17%  Similarity=0.312  Sum_probs=68.1

Q ss_pred             CCCEEEEEECC---CcEEEEcC-CCc--eeEEEecCCCcEEEEEEcCCC-eEEEE-eCCCcEEEEc---CCceeEEEe-c
Q 008510            2 PGVGIISASHD---CTIRLWAL-TGQ--VLMEMVGHTAIVYSIDSHASG-LIVSG-SEDRFAKIWK---DGVCVQSIE-H   69 (563)
Q Consensus         2 ~g~~l~s~s~D---gtIrlWd~-~g~--~i~~l~gH~~~V~~v~~~p~g-~l~s~-s~D~tvriWd---~~~~~~~l~-h   69 (563)
                      ||+.++.++.+   .+|++||+ +|+  ++..+.+|.   .+++|+||| .++.+ +.|+.+.||.   .+.....+. +
T Consensus       214 DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~---~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~  290 (429)
T PRK01742        214 DGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN---GAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSG  290 (429)
T ss_pred             CCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc---CceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccC
Confidence            57888888754   36999999 554  344444543   468999999 66655 5788877774   444455555 6


Q ss_pred             CCcEEEEEEccCCc-EEEEe-CCCcEEEEEcCC
Q 008510           70 PGCVWDAKFLENGD-IVTAC-SDGVTRIWTVHS  100 (563)
Q Consensus        70 ~~~V~~v~~~p~g~-i~sgs-~Dg~Irvwd~~~  100 (563)
                      ...+.+.+|+|||+ |+.++ .+|..++|+++.
T Consensus       291 ~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~  323 (429)
T PRK01742        291 AGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSA  323 (429)
T ss_pred             CCCcCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence            66788999999998 66544 578888888753

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=98.22  E-value=4.4e-05  Score=82.52  Aligned_cols=66  Identities=18%  Similarity=0.345  Sum_probs=52.7

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC----eEEEEeCCCcEEEEc--CCceeEEEe
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG----LIVSGSEDRFAKIWK--DGVCVQSIE   68 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g----~l~s~s~D~tvriWd--~~~~~~~l~   68 (563)
                      |++.++.+. +.+|+||.. +|+|++.+.+|...+.++.+.|..    ++++++.||+|++||  .+..+.++.
T Consensus        27 D~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~   99 (792)
T KOG1963|consen   27 DAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFD   99 (792)
T ss_pred             CCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEe
Confidence            345555454 668999999 999999999999999999998864    577999999999999  555555543

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=98.21  E-value=7.8e-06  Score=87.52  Aligned_cols=100  Identities=19%  Similarity=0.246  Sum_probs=76.2

Q ss_pred             CCEEEEEECCCcEEEEc---CC--C----ceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc---CCceeEEEe
Q 008510            3 GVGIISASHDCTIRLWA---LT--G----QVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK---DGVCVQSIE   68 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd---~~--g----~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd---~~~~~~~l~   68 (563)
                      -..|+.|+.+|.|..=+   .+  .    +....+..|.+.|+++.++|-+  .|.|+| |-+||||.   ...++..+.
T Consensus       360 p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~  438 (555)
T KOG1587|consen  360 PNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLD  438 (555)
T ss_pred             CceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhh
Confidence            35789999999887722   22  2    2244566789999999999987  555655 99999999   233444444


Q ss_pred             -cCCcEEEEEEccCCc--EEEEeCCCcEEEEEcCCCce
Q 008510           69 -HPGCVWDAKFLENGD--IVTACSDGVTRIWTVHSDKV  103 (563)
Q Consensus        69 -h~~~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~  103 (563)
                       +...|.+++|+|.--  ++++..||.+.+||+.....
T Consensus       439 ~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~  476 (555)
T KOG1587|consen  439 SSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE  476 (555)
T ss_pred             hccceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc
Confidence             777899999999754  89999999999999987653

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.20  E-value=8.3e-05  Score=78.93  Aligned_cols=100  Identities=7%  Similarity=0.133  Sum_probs=62.6

Q ss_pred             CCCEEEEEEC---CCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEE-EEeCCC--cEEEEc-CCceeEEEe-cCC
Q 008510            2 PGVGIISASH---DCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIV-SGSEDR--FAKIWK-DGVCVQSIE-HPG   71 (563)
Q Consensus         2 ~g~~l~s~s~---DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~-s~s~D~--tvriWd-~~~~~~~l~-h~~   71 (563)
                      ||+.++..+.   +..|.+|++ +|+. ..+..+.+.+.+.+|+||| .++ +.+.++  .|.+|| .+.....+. +..
T Consensus       209 DG~~la~~s~~~g~~~i~i~dl~~G~~-~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~  287 (429)
T PRK03629        209 DGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRS  287 (429)
T ss_pred             CCCEEEEEEecCCCcEEEEEECCCCCe-EEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCC
Confidence            5777776543   457999999 5543 2333333445578999999 555 445555  488888 333334444 555


Q ss_pred             cEEEEEEccCCc-EEEEeCC-CcEEEE--EcCCCc
Q 008510           72 CVWDAKFLENGD-IVTACSD-GVTRIW--TVHSDK  102 (563)
Q Consensus        72 ~V~~v~~~p~g~-i~sgs~D-g~Irvw--d~~~~~  102 (563)
                      .+....|+|+|+ |+..+.+ +...+|  |+.++.
T Consensus       288 ~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~  322 (429)
T PRK03629        288 NNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA  322 (429)
T ss_pred             CcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC
Confidence            788999999999 7666553 444454  555543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.19  E-value=8.9e-05  Score=78.68  Aligned_cols=97  Identities=18%  Similarity=0.253  Sum_probs=67.1

Q ss_pred             CCCEEEEEECC---CcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEE-EEeCCCcEEEEc---CCceeEEEe-cCC
Q 008510            2 PGVGIISASHD---CTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIV-SGSEDRFAKIWK---DGVCVQSIE-HPG   71 (563)
Q Consensus         2 ~g~~l~s~s~D---gtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~-s~s~D~tvriWd---~~~~~~~l~-h~~   71 (563)
                      ||+.++..+.+   ..|.+||+ +|+.. .+....+.+.+.+|+||| .++ +.+.|+...||.   .+...+.+. +..
T Consensus       206 DG~~la~~s~~~~~~~I~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~  284 (427)
T PRK02889        206 DGTKLAYVSFESKKPVVYVHDLATGRRR-VVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSG  284 (427)
T ss_pred             CCCEEEEEEccCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCC
Confidence            57788877753   35999999 56543 344445566789999999 554 678888888887   444455565 555


Q ss_pred             cEEEEEEccCCc-EEEEeC-CCcEEEEEcC
Q 008510           72 CVWDAKFLENGD-IVTACS-DGVTRIWTVH   99 (563)
Q Consensus        72 ~V~~v~~~p~g~-i~sgs~-Dg~Irvwd~~   99 (563)
                      .+.+..|+|||+ |+..+. +|...+|.++
T Consensus       285 ~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~  314 (427)
T PRK02889        285 IDTEPFFSPDGRSIYFTSDRGGAPQIYRMP  314 (427)
T ss_pred             CCcCeEEcCCCCEEEEEecCCCCcEEEEEE
Confidence            667889999998 665543 4666666553

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.16  E-value=3.8e-05  Score=75.89  Aligned_cols=199  Identities=16%  Similarity=0.171  Sum_probs=124.2

Q ss_pred             CCEEEEEECCCcEEEEcCC-----CceeEEEecCCCcEEEEEEcCCC--eEEEEeCC--CcEEEEcCCceeEEEe-----
Q 008510            3 GVGIISASHDCTIRLWALT-----GQVLMEMVGHTAIVYSIDSHASG--LIVSGSED--RFAKIWKDGVCVQSIE-----   68 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~~-----g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D--~tvriWd~~~~~~~l~-----   68 (563)
                      +..+.+|-.+|.+.+|...     ...+..+..| ..++.|.-++..  .+++||..  ..++|||..++.+.++     
T Consensus       115 dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvp  193 (412)
T KOG3881|consen  115 DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVP  193 (412)
T ss_pred             CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCC
Confidence            3468889999999999983     3455555554 557777777764  67779998  8899999323355554     


Q ss_pred             -------cCCcEEEEEEccC--Cc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCc
Q 008510           69 -------HPGCVWDAKFLEN--GD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLE  138 (563)
Q Consensus        69 -------h~~~V~~v~~~p~--g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~  138 (563)
                             -|-.+.++.|.+.  .. ++++..-+.+|+||.+.+|.                        .+..+|+....
T Consensus       194 nD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR------------------------PV~~fd~~E~~  249 (412)
T KOG3881|consen  194 NDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR------------------------PVAQFDFLENP  249 (412)
T ss_pred             CccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCc------------------------ceeEeccccCc
Confidence                   2234557888876  34 99999999999999998771                        22333443333


Q ss_pred             eeeecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCC
Q 008510          139 ALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRS  217 (563)
Q Consensus       139 ~l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~  217 (563)
                      +....-.++|...++. +..+....+|.+.+.-.  +            ..+.|-. +-+-++.. +.+..+++.+-|+.
T Consensus       250 is~~~l~p~gn~Iy~g-n~~g~l~~FD~r~~kl~--g------------~~~kg~t-Gsirsih~hp~~~~las~GLDRy  313 (412)
T KOG3881|consen  250 ISSTGLTPSGNFIYTG-NTKGQLAKFDLRGGKLL--G------------CGLKGIT-GSIRSIHCHPTHPVLASCGLDRY  313 (412)
T ss_pred             ceeeeecCCCcEEEEe-cccchhheecccCceee--c------------cccCCcc-CCcceEEEcCCCceEEeecccee
Confidence            3333334445443333 33344456665554211  1            1133322 34667777 55677899999999


Q ss_pred             CChhHHHHHHHHhcCCCcccHHHHHHHHH
Q 008510          218 DNPYDAADKWLLKENLPFSYRQQIVEFIL  246 (563)
Q Consensus       218 ~~~w~~a~~f~~~~~l~~~~~~~v~~fi~  246 (563)
                      ++++++..+-    -|...|+.+-.+||.
T Consensus       314 vRIhD~ktrk----ll~kvYvKs~lt~il  338 (412)
T KOG3881|consen  314 VRIHDIKTRK----LLHKVYVKSRLTFIL  338 (412)
T ss_pred             EEEeecccch----hhhhhhhhccccEEE
Confidence            9999987532    234455555555554

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.16  E-value=8.5e-06  Score=83.31  Aligned_cols=100  Identities=24%  Similarity=0.349  Sum_probs=75.2

Q ss_pred             CCEEEEEECCCcEEEEcC--CCc------eeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe---
Q 008510            3 GVGIISASHDCTIRLWAL--TGQ------VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE---   68 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~--~g~------~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~---   68 (563)
                      .+.|+++|.|.|||+|++  +|+      |..++..|+..|.++.|..+- .+++  .|+-+.+||  .++.+..+.   
T Consensus       747 ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHlWDPFigr~Laq~~dap  824 (1034)
T KOG4190|consen  747 ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHLWDPFIGRLLAQMEDAP  824 (1034)
T ss_pred             ccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcceeecccccchhHhhhcCc
Confidence            467999999999999998  342      677899999999999998886 5554  589999999  666554332   


Q ss_pred             cCCcEEEEEEccC-Cc--E-EEEeCCCcEEEEEcCCCcee
Q 008510           69 HPGCVWDAKFLEN-GD--I-VTACSDGVTRIWTVHSDKVA  104 (563)
Q Consensus        69 h~~~V~~v~~~p~-g~--i-~sgs~Dg~Irvwd~~~~~~~  104 (563)
                      ..+.+..+...++ .+  + +-++...+|+++|.|...+.
T Consensus       825 k~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~  864 (1034)
T KOG4190|consen  825 KEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWT  864 (1034)
T ss_pred             ccCCCceeEecccCcchheeeeccchhhheeeecccccce
Confidence            2335666666675 33  3 44467899999999988744

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.15  E-value=0.0001  Score=78.48  Aligned_cols=90  Identities=13%  Similarity=0.131  Sum_probs=68.0

Q ss_pred             CcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCC---CcEEEEc--CCceeEEEe-cCCcEEEEEEccCCc-E
Q 008510           13 CTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSED---RFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGD-I   84 (563)
Q Consensus        13 gtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D---~tvriWd--~~~~~~~l~-h~~~V~~v~~~p~g~-i   84 (563)
                      .+|.+||.+|...+.+..|...+.+.+|+|+| .++.++.+   ..|.+|+  +++. +.+. +++...+.+|+|+|+ +
T Consensus       184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~-~~l~~~~g~~~~~~~SpDG~~l  262 (433)
T PRK04922        184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR-ELVASFRGINGAPSFSPDGRRL  262 (433)
T ss_pred             EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE-EEeccCCCCccCceECCCCCEE
Confidence            36899999887777788888889999999999 77766643   4699999  4444 3444 556667899999998 5


Q ss_pred             E-EEeCCC--cEEEEEcCCCce
Q 008510           85 V-TACSDG--VTRIWTVHSDKV  103 (563)
Q Consensus        85 ~-sgs~Dg--~Irvwd~~~~~~  103 (563)
                      + +.+.+|  .|++||+.+++.
T Consensus       263 ~~~~s~~g~~~Iy~~d~~~g~~  284 (433)
T PRK04922        263 ALTLSRDGNPEIYVMDLGSRQL  284 (433)
T ss_pred             EEEEeCCCCceEEEEECCCCCe
Confidence            4 555555  599999988763

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.10  E-value=0.00036  Score=74.30  Aligned_cols=100  Identities=15%  Similarity=0.126  Sum_probs=71.2

Q ss_pred             CCCEEEEEEC---CCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eE-EEEeCCCc--EEEEc-CCceeEEEe-cCC
Q 008510            2 PGVGIISASH---DCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LI-VSGSEDRF--AKIWK-DGVCVQSIE-HPG   71 (563)
Q Consensus         2 ~g~~l~s~s~---DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l-~s~s~D~t--vriWd-~~~~~~~l~-h~~   71 (563)
                      ||+.|+..+.   +..|.+||+ +|+. ..+..+.+.+.+.+|+||| .+ ++.+.|+.  |.+|| .+.....+. ++.
T Consensus       212 DG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~  290 (435)
T PRK05137        212 NRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPA  290 (435)
T ss_pred             CCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCC
Confidence            5778887764   468999999 5544 4566677788899999999 54 56777776  55557 444445565 666


Q ss_pred             cEEEEEEccCCc-EEEEeC-CC--cEEEEEcCCCc
Q 008510           72 CVWDAKFLENGD-IVTACS-DG--VTRIWTVHSDK  102 (563)
Q Consensus        72 ~V~~v~~~p~g~-i~sgs~-Dg--~Irvwd~~~~~  102 (563)
                      ...+.+|+|||+ |+..+. +|  .|++||..++.
T Consensus       291 ~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~  325 (435)
T PRK05137        291 IDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN  325 (435)
T ss_pred             ccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC
Confidence            778899999998 766553 33  57788877654

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.08  E-value=8.7e-05  Score=71.64  Aligned_cols=59  Identities=24%  Similarity=0.360  Sum_probs=52.7

Q ss_pred             CCCCEEEEEECCCc-EEEEcC-CCceeEEEecC--CCcEEEEEEcCCC-eEEEEeCCCcEEEEc
Q 008510            1 MPGVGIISASHDCT-IRLWAL-TGQVLMEMVGH--TAIVYSIDSHASG-LIVSGSEDRFAKIWK   59 (563)
Q Consensus         1 ~~g~~l~s~s~Dgt-IrlWd~-~g~~i~~l~gH--~~~V~~v~~~p~g-~l~s~s~D~tvriWd   59 (563)
                      ++|..+||||..|| |||||. +|+.+.++..-  ...|||++|+|++ .++.+|+-||+.|+.
T Consensus       191 ~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~  254 (346)
T KOG2111|consen  191 LQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFS  254 (346)
T ss_pred             CCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEE
Confidence            47999999999998 899999 99999998642  3579999999999 899999999999998

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.07  E-value=2.3e-05  Score=77.44  Aligned_cols=100  Identities=13%  Similarity=0.174  Sum_probs=87.5

Q ss_pred             CCEEEEEECCCcEEEEcC--CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEE-Ee-cCCcEEE
Q 008510            3 GVGIISASHDCTIRLWAL--TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQS-IE-HPGCVWD   75 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~--~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~-l~-h~~~V~~   75 (563)
                      ...|++|..-+.+|+||.  ..+++.++.--+..|.++...|+| .+.+|..-+.+..+|  .++.+.. +. ..+++++
T Consensus       216 ~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirs  295 (412)
T KOG3881|consen  216 NYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRS  295 (412)
T ss_pred             CceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcce
Confidence            367999999999999999  567899988888999999999999 888999999999999  4444443 44 6789999


Q ss_pred             EEEccCCc-EEEEeCCCcEEEEEcCCCc
Q 008510           76 AKFLENGD-IVTACSDGVTRIWTVHSDK  102 (563)
Q Consensus        76 v~~~p~g~-i~sgs~Dg~Irvwd~~~~~  102 (563)
                      +..+|++. ++++|.|..|||+|+.+.+
T Consensus       296 ih~hp~~~~las~GLDRyvRIhD~ktrk  323 (412)
T KOG3881|consen  296 IHCHPTHPVLASCGLDRYVRIHDIKTRK  323 (412)
T ss_pred             EEEcCCCceEEeeccceeEEEeecccch
Confidence            99999998 8999999999999999965

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.06  E-value=0.00037  Score=74.16  Aligned_cols=100  Identities=16%  Similarity=0.136  Sum_probs=67.3

Q ss_pred             CCCEEEEEECC---CcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eE-EEEeCCC--cEEEEc-CCceeEEEe-cCC
Q 008510            2 PGVGIISASHD---CTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LI-VSGSEDR--FAKIWK-DGVCVQSIE-HPG   71 (563)
Q Consensus         2 ~g~~l~s~s~D---gtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l-~s~s~D~--tvriWd-~~~~~~~l~-h~~   71 (563)
                      ||+.++.++.+   ..|.+||+ +|+. ..+..+.+...+.+|+|+| .+ ++.+.++  .|.+|| .+..++.+. +..
T Consensus       214 Dg~~la~~s~~~~~~~l~~~dl~~g~~-~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~  292 (433)
T PRK04922        214 DGKKLAYVSFERGRSAIYVQDLATGQR-ELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFG  292 (433)
T ss_pred             CCCEEEEEecCCCCcEEEEEECCCCCE-EEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCC
Confidence            57888887743   46999999 5554 3444555556688999999 54 4666666  488888 433344455 555


Q ss_pred             cEEEEEEccCCc-EEEEeC-CCc--EEEEEcCCCc
Q 008510           72 CVWDAKFLENGD-IVTACS-DGV--TRIWTVHSDK  102 (563)
Q Consensus        72 ~V~~v~~~p~g~-i~sgs~-Dg~--Irvwd~~~~~  102 (563)
                      .....+|+|||+ |+.++. +|.  |+++|+.+++
T Consensus       293 ~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~  327 (433)
T PRK04922        293 IDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS  327 (433)
T ss_pred             CccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            667889999998 766553 444  6666666654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.05  E-value=0.00027  Score=74.71  Aligned_cols=100  Identities=19%  Similarity=0.217  Sum_probs=66.8

Q ss_pred             CCCEEEEEECC---CcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eE-EEEeCCC--cEEEEc-CCceeEEEe-cCC
Q 008510            2 PGVGIISASHD---CTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LI-VSGSEDR--FAKIWK-DGVCVQSIE-HPG   71 (563)
Q Consensus         2 ~g~~l~s~s~D---gtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l-~s~s~D~--tvriWd-~~~~~~~l~-h~~   71 (563)
                      ||++++.++.+   ..|++|++ +|+. ..+..+.+.+.+++|+|+| .+ ++.+.++  .|.+|+ .+...+.+. +..
T Consensus       200 dg~~la~~~~~~~~~~i~v~d~~~g~~-~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~  278 (417)
T TIGR02800       200 DGQKLAYVSFESGKPEIYVQDLATGQR-EKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPG  278 (417)
T ss_pred             CCCEEEEEEcCCCCcEEEEEECCCCCE-EEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCC
Confidence            57778777654   47999999 5544 3445566777889999998 54 4555555  477788 444444454 555


Q ss_pred             cEEEEEEccCCc-EEEEeC-CC--cEEEEEcCCCc
Q 008510           72 CVWDAKFLENGD-IVTACS-DG--VTRIWTVHSDK  102 (563)
Q Consensus        72 ~V~~v~~~p~g~-i~sgs~-Dg--~Irvwd~~~~~  102 (563)
                      ......|+|+|+ |+..+. ++  .|+++|+.+++
T Consensus       279 ~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~  313 (417)
T TIGR02800       279 IDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE  313 (417)
T ss_pred             CCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            566788999998 665554 33  57777776654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.00  E-value=0.00024  Score=75.42  Aligned_cols=86  Identities=15%  Similarity=0.194  Sum_probs=63.5

Q ss_pred             CcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCC---CcEEEEc--CCceeEEEe-cCCcEEEEEEccCCc-E
Q 008510           13 CTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSED---RFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGD-I   84 (563)
Q Consensus        13 gtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D---~tvriWd--~~~~~~~l~-h~~~V~~v~~~p~g~-i   84 (563)
                      ..|.+||.+|...+.+..|...+.+.+|+||| .++..+.+   ..|.+||  +++.. .+. .++.+.+.+|+|||+ |
T Consensus       176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~l  254 (427)
T PRK02889        176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-VVANFKGSNSAPAWSPDGRTL  254 (427)
T ss_pred             cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCCEE
Confidence            35777777887777777888899999999999 66665533   3589999  45543 344 556778999999998 6


Q ss_pred             E-EEeCCCcEEEEEcC
Q 008510           85 V-TACSDGVTRIWTVH   99 (563)
Q Consensus        85 ~-sgs~Dg~Irvwd~~   99 (563)
                      + +.+.||..++|.++
T Consensus       255 a~~~~~~g~~~Iy~~d  270 (427)
T PRK02889        255 AVALSRDGNSQIYTVN  270 (427)
T ss_pred             EEEEccCCCceEEEEE
Confidence            5 56778877777653

>PRK03629 tolB translocation protein TolB; Provisional

Probab=97.98  E-value=0.00061  Score=72.33  Aligned_cols=89  Identities=15%  Similarity=0.117  Sum_probs=63.5

Q ss_pred             cEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEe---CCCcEEEEc--CCceeEEEecCCcEEEEEEccCCc-EEE
Q 008510           14 TIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGS---EDRFAKIWK--DGVCVQSIEHPGCVWDAKFLENGD-IVT   86 (563)
Q Consensus        14 tIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s---~D~tvriWd--~~~~~~~l~h~~~V~~v~~~p~g~-i~s   86 (563)
                      .|.+||.+|...+.+..+...+.+.+|+||| .++..+   .+..+.+|+  +++..+....++.+.+++|+|||+ |+.
T Consensus       180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~  259 (429)
T PRK03629        180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAF  259 (429)
T ss_pred             eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEE
Confidence            6889998776666677778889999999999 666443   234688898  444333223555566789999998 654


Q ss_pred             E-eCCC--cEEEEEcCCCc
Q 008510           87 A-CSDG--VTRIWTVHSDK  102 (563)
Q Consensus        87 g-s~Dg--~Irvwd~~~~~  102 (563)
                      . +.+|  .|++||+.+++
T Consensus       260 ~~~~~g~~~I~~~d~~tg~  278 (429)
T PRK03629        260 ALSKTGSLNLYVMDLASGQ  278 (429)
T ss_pred             EEcCCCCcEEEEEECCCCC
Confidence            3 4455  48889998775

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=97.96  E-value=0.00092  Score=70.65  Aligned_cols=89  Identities=12%  Similarity=0.132  Sum_probs=65.1

Q ss_pred             cEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCC---CcEEEEc--CCceeEEEecCCcEEEEEEccCCc-EE-
Q 008510           14 TIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSED---RFAKIWK--DGVCVQSIEHPGCVWDAKFLENGD-IV-   85 (563)
Q Consensus        14 tIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D---~tvriWd--~~~~~~~l~h~~~V~~v~~~p~g~-i~-   85 (563)
                      .|.++|.+|...+.+..|...+.+.+|+|+| .++.++.+   ..|++|+  +++......+.+.+.+++|+|+|+ |+ 
T Consensus       171 ~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~  250 (417)
T TIGR02800       171 ELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAV  250 (417)
T ss_pred             eEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEE
Confidence            5778888776667777788889999999999 66665543   4799999  454433333666778899999998 65 


Q ss_pred             EEeCCC--cEEEEEcCCCc
Q 008510           86 TACSDG--VTRIWTVHSDK  102 (563)
Q Consensus        86 sgs~Dg--~Irvwd~~~~~  102 (563)
                      +.+.++  .|++||+.++.
T Consensus       251 ~~~~~~~~~i~~~d~~~~~  269 (417)
T TIGR02800       251 SLSKDGNPDIYVMDLDGKQ  269 (417)
T ss_pred             EECCCCCccEEEEECCCCC
Confidence            444444  58888988765

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=97.93  E-value=4.6e-05  Score=80.73  Aligned_cols=213  Identities=13%  Similarity=0.196  Sum_probs=133.3

Q ss_pred             CEEEEEECCCcEEEEcC----CCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc---CCceeEEEe-cCCcE
Q 008510            4 VGIISASHDCTIRLWAL----TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK---DGVCVQSIE-HPGCV   73 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~----~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd---~~~~~~~l~-h~~~V   73 (563)
                      ..+++.++-.+| +|++    +....-.+.||+..|..+.|+|..  .+++|+-|..|..||   -...+.... -....
T Consensus        83 ~wiVsts~qkai-iwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~a  161 (1081)
T KOG0309|consen   83 YWIVSTSNQKAI-IWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAA  161 (1081)
T ss_pred             eeEEecCcchhh-hhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccC
Confidence            356777766654 8998    234556678999999999999986  899999999999999   344555554 22356


Q ss_pred             EEEEEcc-CCcEEEEeCCCcEEEEEcCCCceeceeeeccccccc---------ceeEEeeccCCceEEEeCCCCc----e
Q 008510           74 WDAKFLE-NGDIVTACSDGVTRIWTVHSDKVADSLELEAYASEL---------SQYKLCRKKVGGLKLEDLPGLE----A  139 (563)
Q Consensus        74 ~~v~~~p-~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v---------~~~~~~~~~~~~i~~~d~~~~~----~  139 (563)
                      ..|+|+- ++.+.+.+....|++||.+.+. .+...++.+...+         ....++...++.+++||.....    .
T Consensus       162 sqVkwnyk~p~vlasshg~~i~vwd~r~gs-~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~  240 (1081)
T KOG0309|consen  162 SQVKWNYKDPNVLASSHGNDIFVWDLRKGS-TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKR  240 (1081)
T ss_pred             ceeeecccCcchhhhccCCceEEEeccCCC-cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccce
Confidence            7889986 4557777888999999999876 2333344333222         2445577888999999986431    1


Q ss_pred             eeec----------ccCCCeEEEEecCCCeEEEEEe--cccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc----
Q 008510          140 LQIP----------GTNAGQTKVVREGDNGVAYSWD--MKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI----  203 (563)
Q Consensus       140 l~~~----------g~~dg~~~l~~~~~~~~~~~wd--~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~----  203 (563)
                      ...+          ---+|.+.|...++. ++.+.+  .....|.+.    ..   ......|.||. |.|...-+    
T Consensus       241 ~vtt~~piw~~r~~Pfg~g~~~mp~~G~n-~v~~~~c~n~d~e~n~~----~~---~~pVh~F~GH~-D~V~eFlWR~r~  311 (1081)
T KOG0309|consen  241 TVTTNFPIWRGRYLPFGEGYCIMPMVGGN-MVPQLRCENSDLEWNVF----DL---NTPVHTFVGHD-DVVLEFLWRKRK  311 (1081)
T ss_pred             eccccCcceeccccccCceeEeccccCCe-eeeeccccchhhhhccc----cC---CcceeeecCcc-hHHHHHhhhhcc
Confidence            1110          112555555555443 333332  222334322    10   11344577776 55543222    


Q ss_pred             ------CCCC-eeeeecCCCCCChhHHHHHH
Q 008510          204 ------GDGE-PTRKLPYNRSDNPYDAADKW  227 (563)
Q Consensus       204 ------~dg~-~~~~~~~n~~~~~w~~a~~f  227 (563)
                            .+.. .+.+-+-|.+.+.|-+....
T Consensus       312 e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~i  342 (1081)
T KOG0309|consen  312 ECDGDYDSRDFQLVTWSKDQTLRLWPIDSQI  342 (1081)
T ss_pred             cccCCCCccceeEEEeecCCceEeeeccHHH
Confidence                  1111 26788889999999887554

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=97.93  E-value=7.1e-05  Score=71.48  Aligned_cols=98  Identities=14%  Similarity=0.123  Sum_probs=77.7

Q ss_pred             CCEEEEEECCCcEEEEcC-CCce--eEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc---CCceeEE-Ee-cCCc
Q 008510            3 GVGIISASHDCTIRLWAL-TGQV--LMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK---DGVCVQS-IE-HPGC   72 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~--i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd---~~~~~~~-l~-h~~~   72 (563)
                      |..++++-.+|.+.+-+. ....  ++++++|.-..+-..|+...  .+.+||+|+.++.||   .++++.. .+ |...
T Consensus       133 ~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~G  212 (339)
T KOG0280|consen  133 GTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSG  212 (339)
T ss_pred             CceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecc
Confidence            455777778888885444 4433  44889999999999998654  789999999999999   4466554 33 8889


Q ss_pred             EEEEEEccC-Cc-EEEEeCCCcEEEEEcCC
Q 008510           73 VWDAKFLEN-GD-IVTACSDGVTRIWTVHS  100 (563)
Q Consensus        73 V~~v~~~p~-g~-i~sgs~Dg~Irvwd~~~  100 (563)
                      |.++.-+|. +. |++|+.|-.|++||.|.
T Consensus       213 V~SI~ss~~~~~~I~TGsYDe~i~~~DtRn  242 (339)
T KOG0280|consen  213 VVSIYSSPPKPTYIATGSYDECIRVLDTRN  242 (339)
T ss_pred             eEEEecCCCCCceEEEeccccceeeeehhc
Confidence            999999875 44 99999999999999994

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=97.91  E-value=0.00021  Score=69.05  Aligned_cols=86  Identities=14%  Similarity=0.119  Sum_probs=68.8

Q ss_pred             EEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-C----CceeEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEc
Q 008510           27 EMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-D----GVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTV   98 (563)
Q Consensus        27 ~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~----~~~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~   98 (563)
                      .+.--..+|+|.+|++|+ .++.+-....|.|+. .    .+..+++. |...|..|.|.|.++ |++|+.|..-+||..
T Consensus         5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~   84 (361)
T KOG1523|consen    5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ   84 (361)
T ss_pred             EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence            343345789999999999 899988888999998 2    35677887 888999999999886 999999999999999


Q ss_pred             -CCCceeceeeeccc
Q 008510           99 -HSDKVADSLELEAY  112 (563)
Q Consensus        99 -~~~~~~~~~~~~~~  112 (563)
                       ..++..+...+..+
T Consensus        85 ~~~~~WkptlvLlRi   99 (361)
T KOG1523|consen   85 PSGGTWKPTLVLLRI   99 (361)
T ss_pred             CCCCeeccceeEEEe
Confidence             55555554444433

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=97.79  E-value=4.5e-05  Score=88.01  Aligned_cols=132  Identities=14%  Similarity=0.241  Sum_probs=99.1

Q ss_pred             CCEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCCeEEE---EeCCCcEEEEc-----CCceeEEEecCCcEE
Q 008510            3 GVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVS---GSEDRFAKIWK-----DGVCVQSIEHPGCVW   74 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g~l~s---~s~D~tvriWd-----~~~~~~~l~h~~~V~   74 (563)
                      |+.+..+..||.+.+|....++....+.|.-...+++|...+ +++   .++++.+.+||     ...++. -.|.+.++
T Consensus      2263 Gnk~~i~d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~s~-~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT 2340 (2439)
T KOG1064|consen 2263 GNKFGIVDGDGDLSLWQASPKPYTSWQCHNKALSDFRFIGSL-LATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGAT 2340 (2439)
T ss_pred             CCceeeeccCCceeecccCCcceeccccCCccccceeeeehh-hhccccCCCCCcccchhcccCcccceee-eecCCCce
Confidence            667778888999999999888888888899888888887643 444   35678999999     223444 22999999


Q ss_pred             EEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCcee
Q 008510           75 DAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEAL  140 (563)
Q Consensus        75 ~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l  140 (563)
                      ++++-|+.. +++||.+|.|++||++..+..+...  ...  .......+...|.+++|++.+...+
T Consensus      2341 ~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~--~~~--~~~~f~~~ss~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2341 VLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQ--ALD--TREYFVTGSSEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred             EEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhh--hhh--hhheeeccCcccceEEEEccccchh
Confidence            999999988 8999999999999999877433221  111  3344556667788888888766444

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.79  E-value=0.00027  Score=68.93  Aligned_cols=99  Identities=14%  Similarity=0.220  Sum_probs=71.3

Q ss_pred             CCCEEEEEECCCcEEEEcC--CCc----eeEEEecCCC------------cEEEEEEcCCC---eEEEEeCCCcEEEEc-
Q 008510            2 PGVGIISASHDCTIRLWAL--TGQ----VLMEMVGHTA------------IVYSIDSHASG---LIVSGSEDRFAKIWK-   59 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~--~g~----~i~~l~gH~~------------~V~~v~~~p~g---~l~s~s~D~tvriWd-   59 (563)
                      .|++|++|..+|.|-++.-  ..+    ...+++.|..            .|..+.|.+++   .+...+.|+++++|. 
T Consensus        36 ~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi  115 (433)
T KOG1354|consen   36 YGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKI  115 (433)
T ss_pred             ccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeee
Confidence            5899999999999999975  222    3345555643            36678898875   677888999999997 


Q ss_pred             C--C--c--------------------------------eeEEEe--cCCcEEEEEEccCCcEEEEeCCCcEEEEEcCC
Q 008510           60 D--G--V--------------------------------CVQSIE--HPGCVWDAKFLENGDIVTACSDGVTRIWTVHS  100 (563)
Q Consensus        60 ~--~--~--------------------------------~~~~l~--h~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~  100 (563)
                      .  +  .                                |.+.+.  |+-.|.+++++.|+.....+.|=.|.+|.+.-
T Consensus       116 ~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei  194 (433)
T KOG1354|consen  116 RERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNLEI  194 (433)
T ss_pred             eccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccceeeeeccccc
Confidence            1  1  0                                112222  66678999999988855556788899998863

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.74  E-value=0.00059  Score=73.55  Aligned_cols=159  Identities=13%  Similarity=0.093  Sum_probs=109.3

Q ss_pred             CCCEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEEE
Q 008510            2 PGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKF   78 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~~   78 (563)
                      .+++|+-|..+|.|++.+..|.+ .+...|+..      ..+| +++|||.||+|.|-.  +.+...++.....+.+|++
T Consensus        48 ~~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial  120 (846)
T KOG2066|consen   48 HDKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIAL  120 (846)
T ss_pred             hcceeeeccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEe
Confidence            46789999999999999998887 666667665      5568 999999999999998  7777777777778999999


Q ss_pred             ccC------CcEEEEeCCCcEEEEEcCCCceeceeeeccccccccee-----EEeeccCCceEEEeCCCCceeeecccCC
Q 008510           79 LEN------GDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQY-----KLCRKKVGGLKLEDLPGLEALQIPGTNA  147 (563)
Q Consensus        79 ~p~------g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~-----~~~~~~~~~i~~~d~~~~~~l~~~g~~d  147 (563)
                      +|+      +++++||.-| +.++..+=-.......+..-++.+.+.     .++-..+-.++++|.+....+...-.+.
T Consensus       121 ~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~lIAWand~Gv~vyd~~~~~~l~~i~~p~  199 (846)
T KOG2066|consen  121 HPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGNLIAWANDDGVKVYDTPTRQRLTNIPPPS  199 (846)
T ss_pred             ccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCcEEEEecCCCcEEEeccccceeeccCCCC
Confidence            997      2389999988 666654311101111233333333322     3344567789999999887765542222


Q ss_pred             Ce-------EEEEecCCCeEEEEEeccc
Q 008510          148 GQ-------TKVVREGDNGVAYSWDMKE  168 (563)
Q Consensus       148 g~-------~~l~~~~~~~~~~~wd~~~  168 (563)
                      +.       ..+.+..+...+..|..+.
T Consensus       200 ~~~R~e~fpphl~W~~~~~LVIGW~d~v  227 (846)
T KOG2066|consen  200 QSVRPELFPPHLHWQDEDRLVIGWGDSV  227 (846)
T ss_pred             CCCCcccCCCceEecCCCeEEEecCCeE
Confidence            21       2456666667777887543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.72  E-value=0.0076  Score=58.12  Aligned_cols=196  Identities=18%  Similarity=0.163  Sum_probs=112.8

Q ss_pred             CCCcEEEEcC-CCceeEEEec---CCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEEEccCCcE
Q 008510           11 HDCTIRLWAL-TGQVLMEMVG---HTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKFLENGDI   84 (563)
Q Consensus        11 ~DgtIrlWd~-~g~~i~~l~g---H~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~~~p~g~i   84 (563)
                      .+|+|..||. +|+.+....-   ..+.+ +..+..++.+++++.++.+..||  +|+.+.....+..+...-...++.+
T Consensus         1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v   79 (238)
T PF13360_consen    1 DDGTLSALDPRTGKELWSYDLGPGIGGPV-ATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRV   79 (238)
T ss_dssp             -TSEEEEEETTTTEEEEEEECSSSCSSEE-ETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEE
T ss_pred             CCCEEEEEECCCCCEEEEEECCCCCCCcc-ceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeeccccc
Confidence            3789999999 9999888753   22222 22333455777778999999999  8888887774443322223345568


Q ss_pred             EEEeCCCcEEEEEcCCCceecee-eec----ccccc----c-ceeEEeeccCCceEEEeCCCCceeeec-c-c-------
Q 008510           85 VTACSDGVTRIWTVHSDKVADSL-ELE----AYASE----L-SQYKLCRKKVGGLKLEDLPGLEALQIP-G-T-------  145 (563)
Q Consensus        85 ~sgs~Dg~Irvwd~~~~~~~~~~-~~~----~~~~~----v-~~~~~~~~~~~~i~~~d~~~~~~l~~~-g-~-------  145 (563)
                      +.++.|+.++.+|..+++..-.. ...    .....    + ....+.....+.+...|..++..+-.. . .       
T Consensus        80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~  159 (238)
T PF13360_consen   80 YVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPI  159 (238)
T ss_dssp             EEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--E
T ss_pred             ccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcce
Confidence            88889999999999999854331 111    01001    1 123344444677777777655443211 1 1       


Q ss_pred             ------------CCCeEEEEecCCCeEEEEEecccce--EEEe-CcEeeCCCCCCCceeecCcccCcEEEEEcCCCCeee
Q 008510          146 ------------NAGQTKVVREGDNGVAYSWDMKEQK--WDKL-GEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGEPTR  210 (563)
Q Consensus       146 ------------~dg~~~l~~~~~~~~~~~wd~~~~~--w~~~-g~v~~~~~~~~~~~~~~g~~~d~v~~vd~~dg~~~~  210 (563)
                                  .++ ...+...++.+..+ |..++.  |... +...... ...+..+|.+...+.++.+|...|+.+.
T Consensus       160 ~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~~~~~~~~~-~~~~~~l~~~~~~~~l~~~d~~tG~~~W  236 (238)
T PF13360_consen  160 SSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKPISGIYSLP-SVDGGTLYVTSSDGRLYALDLKTGKVVW  236 (238)
T ss_dssp             EEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEECSS-ECECE-ECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred             eeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEecCCCccCCc-eeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence                        123 23333334333333 777775  7544 2222111 1124455555556888899988887543

...

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.70  E-value=0.00021  Score=74.31  Aligned_cols=95  Identities=18%  Similarity=0.230  Sum_probs=81.5

Q ss_pred             CEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEEE
Q 008510            4 VGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKF   78 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~~   78 (563)
                      ..|.||+.|+.+-.|+. +++.++.+.+....+.+++++||| .++++|  +++++||  +++.+++|+ |.+.|++++|
T Consensus       115 ~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f  192 (541)
T KOG4547|consen  115 GCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSF  192 (541)
T ss_pred             CceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEE
Confidence            46899999999999999 899999999999999999999999 888876  6899999  889999999 9999999999


Q ss_pred             ccC-----Cc--EEEEeCCCcEEEEEcCC
Q 008510           79 LEN-----GD--IVTACSDGVTRIWTVHS  100 (563)
Q Consensus        79 ~p~-----g~--i~sgs~Dg~Irvwd~~~  100 (563)
                      .-+     |.  +.+...+..+.+|-++.
T Consensus       193 ~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  193 TTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             EEeccccccceeeeccccccceeEEEEEc
Confidence            876     55  34445566778887665

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.70  E-value=0.0013  Score=54.59  Aligned_cols=66  Identities=20%  Similarity=0.247  Sum_probs=56.4

Q ss_pred             EEEEEEcC---CC--eEEEEeCCCcEEEEcCCceeEEEecCCcEEEEEEccCCcEEEEeCCCcEEEEEcCC
Q 008510           35 VYSIDSHA---SG--LIVSGSEDRFAKIWKDGVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHS  100 (563)
Q Consensus        35 V~~v~~~p---~g--~l~s~s~D~tvriWd~~~~~~~l~h~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~  100 (563)
                      |.++++..   +|  .|+.||+|..||+|+..+.+..++.++.|.+++-...++++.+-.+|+|.+|+...
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~   72 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRSQ   72 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCcc
Confidence            55666543   55  79999999999999977899999988899999999888899999999999998644

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=97.69  E-value=0.00046  Score=66.98  Aligned_cols=83  Identities=18%  Similarity=0.263  Sum_probs=65.0

Q ss_pred             EEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc-CCceeEEEecCC-cEEEEEEc
Q 008510            5 GIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK-DGVCVQSIEHPG-CVWDAKFL   79 (563)
Q Consensus         5 ~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd-~~~~~~~l~h~~-~V~~v~~~   79 (563)
                      .+.....|+.|.+|++ .-+--..+..-...+.+++|+|||  .+.++.-|-.+.||. ..+...-+.|+. .+..++|+
T Consensus        63 ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~  142 (447)
T KOG4497|consen   63 ILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFH  142 (447)
T ss_pred             eeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEEC
Confidence            3555677999999999 566566677777889999999999  677888899999999 444444566655 78999999


Q ss_pred             cCCcEEEE
Q 008510           80 ENGDIVTA   87 (563)
Q Consensus        80 p~g~i~sg   87 (563)
                      |+|++++-
T Consensus       143 ~dg~f~ai  150 (447)
T KOG4497|consen  143 PDGQFCAI  150 (447)
T ss_pred             CCCceeee
Confidence            99995443

>PRK00178 tolB translocation protein TolB; Provisional

Probab=97.69  E-value=0.0089  Score=63.52  Aligned_cols=90  Identities=14%  Similarity=0.115  Sum_probs=63.7

Q ss_pred             cEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCC---CcEEEEc-CCceeEEEe-cCCcEEEEEEccCCc-EE-
Q 008510           14 TIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSED---RFAKIWK-DGVCVQSIE-HPGCVWDAKFLENGD-IV-   85 (563)
Q Consensus        14 tIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D---~tvriWd-~~~~~~~l~-h~~~V~~v~~~p~g~-i~-   85 (563)
                      .|.++|.+|...+.+..|...+.+.+|+|+| .++..+.+   ..|.+|+ .+...+.+. .++.+...+|+|||+ ++ 
T Consensus       180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~  259 (430)
T PRK00178        180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAF  259 (430)
T ss_pred             EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEE
Confidence            4777788777667777788889999999999 66655533   3578888 333334444 445666789999998 65 


Q ss_pred             EEeCCC--cEEEEEcCCCce
Q 008510           86 TACSDG--VTRIWTVHSDKV  103 (563)
Q Consensus        86 sgs~Dg--~Irvwd~~~~~~  103 (563)
                      +...+|  .|++||+.+++.
T Consensus       260 ~~~~~g~~~Iy~~d~~~~~~  279 (430)
T PRK00178        260 VLSKDGNPEIYVMDLASRQL  279 (430)
T ss_pred             EEccCCCceEEEEECCCCCe
Confidence            444455  588889988763

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=97.68  E-value=0.00018  Score=67.63  Aligned_cols=67  Identities=21%  Similarity=0.522  Sum_probs=55.1

Q ss_pred             cEEEEEEcCCC--eEEEEeCCCcEEEEc--CCcee-EEEe-cCCcEEEEEEccC-Cc-EEEEeCCCcEEEEEcCC
Q 008510           34 IVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCV-QSIE-HPGCVWDAKFLEN-GD-IVTACSDGVTRIWTVHS  100 (563)
Q Consensus        34 ~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~-~~l~-h~~~V~~v~~~p~-g~-i~sgs~Dg~Irvwd~~~  100 (563)
                      .|.+++-+|..  .+++|++||.+.+||  ..... ..+. |...+|.|.|+|. ++ +.+++.||.+-.||..+
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            48999999965  788899999999999  33322 2333 9999999999994 55 99999999999999886

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.67  E-value=7.9e-05  Score=76.44  Aligned_cols=77  Identities=23%  Similarity=0.483  Sum_probs=61.7

Q ss_pred             eEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc---------CCceeEEEe-cCCcEEEEEEccCCc-EEEEeCCCc
Q 008510           25 LMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK---------DGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGV   92 (563)
Q Consensus        25 i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd---------~~~~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~   92 (563)
                      +..+.||+..|..++-..+. -+++++.|+||++|.         +..|..+++ |+.+|.++.|..+-+ +++  -||.
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~g  805 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGG  805 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCc
Confidence            34678999998887755444 799999999999998         223666777 999999999998876 664  4899


Q ss_pred             EEEEEcCCCce
Q 008510           93 TRIWTVHSDKV  103 (563)
Q Consensus        93 Irvwd~~~~~~  103 (563)
                      |.+||.--++.
T Consensus       806 iHlWDPFigr~  816 (1034)
T KOG4190|consen  806 IHLWDPFIGRL  816 (1034)
T ss_pred             ceeecccccch
Confidence            99999877763

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=97.66  E-value=0.00034  Score=75.89  Aligned_cols=97  Identities=15%  Similarity=0.214  Sum_probs=81.9

Q ss_pred             CCCEEEEEECCCcEEEEcCCC-----ceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCc
Q 008510            2 PGVGIISASHDCTIRLWALTG-----QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGC   72 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~~g-----~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~   72 (563)
                      .++++++|..||.|.+|.--|     .....++=|...|.+++|+++| .+.|||..+-+-+|.  +++ .+-+. ..+.
T Consensus       216 n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~  294 (792)
T KOG1963|consen  216 NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSP  294 (792)
T ss_pred             ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCe
Confidence            478999999999999998622     2345677799999999999999 999999999999999  555 45555 6779


Q ss_pred             EEEEEEccCCc-EEEEeCCCcEEEEEcC
Q 008510           73 VWDAKFLENGD-IVTACSDGVTRIWTVH   99 (563)
Q Consensus        73 V~~v~~~p~g~-i~sgs~Dg~Irvwd~~   99 (563)
                      |..+.++||++ .+..+.|+.|.+-...
T Consensus       295 I~~i~vS~ds~~~sl~~~DNqI~li~~~  322 (792)
T KOG1963|consen  295 ILHIVVSPDSDLYSLVLEDNQIHLIKAS  322 (792)
T ss_pred             eEEEEEcCCCCeEEEEecCceEEEEecc
Confidence            99999999999 6788889999888764

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=97.65  E-value=0.00022  Score=82.67  Aligned_cols=163  Identities=17%  Similarity=0.255  Sum_probs=108.9

Q ss_pred             CEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe--cCCcEEEEEE
Q 008510            4 VGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE--HPGCVWDAKF   78 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~--h~~~V~~v~~   78 (563)
                      +.+....-+++..-|...|.-+ .++-|-..|.++.-+|.. ..+||+.||.|++|.  .+..+..++  .+..|..+.|
T Consensus      2181 ~~~~~~n~~~~~~tq~~~~~~~-~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f 2259 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGASV-MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRF 2259 (2439)
T ss_pred             ccCCcccCCccccceeccccee-EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhh
Confidence            4455555567777777644332 234456778888888877 889999999999999  666666666  4578999999


Q ss_pred             ccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEe---------eccCCceEEEeC--CCCceeeecccC
Q 008510           79 LENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLC---------RKKVGGLKLEDL--PGLEALQIPGTN  146 (563)
Q Consensus        79 ~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~---------~~~~~~i~~~d~--~~~~~l~~~g~~  146 (563)
                      +.+|. +..+..||.+.+|.....-   -...+.|......+.+.         ...++.+.+||.  ++...+.-..|.
T Consensus      2260 ~~qGnk~~i~d~dg~l~l~q~~pk~---~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~ 2336 (2439)
T KOG1064|consen 2260 NHQGNKFGIVDGDGDLSLWQASPKP---YTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHD 2336 (2439)
T ss_pred             cccCCceeeeccCCceeecccCCcc---eeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecC
Confidence            99998 8888999999999988432   12233344333333332         124578999996  333333335666


Q ss_pred             CCeEE---------EEecCCCeEEEEEecccce
Q 008510          147 AGQTK---------VVREGDNGVAYSWDMKEQK  170 (563)
Q Consensus       147 dg~~~---------l~~~~~~~~~~~wd~~~~~  170 (563)
                      .|.+.         ++.++.++.+++||...++
T Consensus      2337 ~gaT~l~~~P~~qllisggr~G~v~l~D~rqrq 2369 (2439)
T KOG1064|consen 2337 GGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQ 2369 (2439)
T ss_pred             CCceEEEEcCcceEEEecCCcCcEEEeehHHHH
Confidence            66543         3444556778889976654

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.65  E-value=0.00031  Score=73.60  Aligned_cols=72  Identities=13%  Similarity=0.062  Sum_probs=60.3

Q ss_pred             cCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEecCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCC
Q 008510           30 GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSD  101 (563)
Q Consensus        30 gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~  101 (563)
                      .+.+.|.|++++|+. .++.|++||+|++|| ..+..+..++.-....++|+|+|. +++|+.-|.+.+||+.-.
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            467789999999998 999999999999999 544444445666889999999999 788888899999998644

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=97.60  E-value=0.00016  Score=69.20  Aligned_cols=100  Identities=20%  Similarity=0.266  Sum_probs=76.5

Q ss_pred             CCEEEEEECCCcEEEEcC--CCceeEE-EecCCCcEEEEEEcCC-C-eEEEEeCCCcEEEEc---CCceeEEEecCCcEE
Q 008510            3 GVGIISASHDCTIRLWAL--TGQVLME-MVGHTAIVYSIDSHAS-G-LIVSGSEDRFAKIWK---DGVCVQSIEHPGCVW   74 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~--~g~~i~~-l~gH~~~V~~v~~~p~-g-~l~s~s~D~tvriWd---~~~~~~~l~h~~~V~   74 (563)
                      -+.+.+||.|+.+.-||.  .++++.. -+-|+..|.|+.-+|. + .+++|+-|.++++||   -++++..-.-.+.||
T Consensus       178 pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVW  257 (339)
T KOG0280|consen  178 PNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVW  257 (339)
T ss_pred             CceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceE
Confidence            367899999999999998  5666655 6679999999998875 4 899999999999999   345544334567999


Q ss_pred             EEEEccCC--cEEEEeCCCcEEEEEcCCCc
Q 008510           75 DAKFLENG--DIVTACSDGVTRIWTVHSDK  102 (563)
Q Consensus        75 ~v~~~p~g--~i~sgs~Dg~Irvwd~~~~~  102 (563)
                      .+.++|.-  ++..+|.-+-.+|-+...+.
T Consensus       258 Ri~~~p~~~~~lL~~CMh~G~ki~~~~~~~  287 (339)
T KOG0280|consen  258 RIKHHPEIFHRLLAACMHNGAKILDSSDKV  287 (339)
T ss_pred             EEEecchhhhHHHHHHHhcCceEEEecccc
Confidence            99999953  35555555556676665543

>PRK04792 tolB translocation protein TolB; Provisional

Probab=97.60  E-value=0.0072  Score=64.53  Aligned_cols=89  Identities=13%  Similarity=0.145  Sum_probs=60.8

Q ss_pred             cEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEe-CCC--cEEEEc-CCceeEEEe-cCCcEEEEEEccCCc-EE-
Q 008510           14 TIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGS-EDR--FAKIWK-DGVCVQSIE-HPGCVWDAKFLENGD-IV-   85 (563)
Q Consensus        14 tIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s-~D~--tvriWd-~~~~~~~l~-h~~~V~~v~~~p~g~-i~-   85 (563)
                      .|.++|.+|.-.+.+..+...+.+..|+||| .++..+ +++  .|.+|| .+.....+. .++.....+|+|||+ |+ 
T Consensus       199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~  278 (448)
T PRK04792        199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLAL  278 (448)
T ss_pred             EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEE
Confidence            5667788776556777778889999999999 665543 344  477777 333333344 344556789999998 65 


Q ss_pred             EEeCCCc--EEEEEcCCCc
Q 008510           86 TACSDGV--TRIWTVHSDK  102 (563)
Q Consensus        86 sgs~Dg~--Irvwd~~~~~  102 (563)
                      +.+.+|.  |++||+.+++
T Consensus       279 ~~~~~g~~~Iy~~dl~tg~  297 (448)
T PRK04792        279 VLSKDGQPEIYVVDIATKA  297 (448)
T ss_pred             EEeCCCCeEEEEEECCCCC
Confidence            4566665  7777887765

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.58  E-value=0.0012  Score=68.91  Aligned_cols=117  Identities=13%  Similarity=0.131  Sum_probs=93.5

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeEEEe--cCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEE
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLMEMV--GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWD   75 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~--gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~   75 (563)
                      -..++-|-..|.|-+|++ .|+.-.++.  +|.+.|.++.++.+- .|-|++.|+.+-.|+  ..+.+..+. .+..+.+
T Consensus        70 t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~s  149 (541)
T KOG4547|consen   70 TSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSS  149 (541)
T ss_pred             ceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccce
Confidence            356788889999999999 888888776  699999999988775 899999999999999  666677676 6668999


Q ss_pred             EEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEee
Q 008510           76 AKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCR  123 (563)
Q Consensus        76 v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~  123 (563)
                      ++.+|||. +++++  +.|++||+.+++...  .+.+|...+..+.+..
T Consensus       150 l~is~D~~~l~~as--~~ik~~~~~~kevv~--~ftgh~s~v~t~~f~~  194 (541)
T KOG4547|consen  150 LCISPDGKILLTAS--RQIKVLDIETKEVVI--TFTGHGSPVRTLSFTT  194 (541)
T ss_pred             EEEcCCCCEEEecc--ceEEEEEccCceEEE--EecCCCcceEEEEEEE
Confidence            99999998 66665  699999999998543  3445555565555443

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=97.56  E-value=0.00023  Score=69.42  Aligned_cols=101  Identities=22%  Similarity=0.325  Sum_probs=76.6

Q ss_pred             CCEEEEEECCCcEEEEcC-C-----CceeEEEecCCCcEEEEEEcC-CC-eEEEEeCCCcEEEEc--CCce---eEEEe-
Q 008510            3 GVGIISASHDCTIRLWAL-T-----GQVLMEMVGHTAIVYSIDSHA-SG-LIVSGSEDRFAKIWK--DGVC---VQSIE-   68 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~-----g~~i~~l~gH~~~V~~v~~~p-~g-~l~s~s~D~tvriWd--~~~~---~~~l~-   68 (563)
                      +..+..|...|.|...|+ .     |.+...+. |.+.|+|+.... ++ .+.+++.+|+|++||  -.+|   ++++. 
T Consensus       264 ~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeG  342 (425)
T KOG2695|consen  264 DNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEG  342 (425)
T ss_pred             CCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeec
Confidence            678889999999999998 2     45666665 899999998776 45 889999999999999  3344   55555 


Q ss_pred             cCCcEEEEEEcc------CCcEEEEeCCCcEEEEEcCCCceecee
Q 008510           69 HPGCVWDAKFLE------NGDIVTACSDGVTRIWTVHSDKVADSL  107 (563)
Q Consensus        69 h~~~V~~v~~~p------~g~i~sgs~Dg~Irvwd~~~~~~~~~~  107 (563)
                      |   |...+..|      +|-|++++.|-..|+|.++++......
T Consensus       343 H---vN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti  384 (425)
T KOG2695|consen  343 H---VNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI  384 (425)
T ss_pred             c---cccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence            5   33333333      334889999999999999999855433

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.55  E-value=0.013  Score=68.96  Aligned_cols=221  Identities=14%  Similarity=0.109  Sum_probs=124.6

Q ss_pred             CCCEEEEEECCCcEEEEcCCCceeEEEec--C------------CCcEEEEEEcCCC-e-EEEEeCCCcEEEEc-CCcee
Q 008510            2 PGVGIISASHDCTIRLWALTGQVLMEMVG--H------------TAIVYSIDSHASG-L-IVSGSEDRFAKIWK-DGVCV   64 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~g--H------------~~~V~~v~~~p~g-~-l~s~s~D~tvriWd-~~~~~   64 (563)
                      +|+.+++-+..+.|++||.+|..+..+.+  .            -..-..+++.+++ . +++-...+.|+++| ....+
T Consensus       579 ~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V  658 (1057)
T PLN02919        579 NNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNETV  658 (1057)
T ss_pred             CCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE
Confidence            35678888888999999998877665543  1            1134789999876 4 44445567899999 55666


Q ss_pred             EEEecC------------------CcEEEEEEcc-CCc-EEEEeCCCcEEEEEcCCCceecee------ee-------cc
Q 008510           65 QSIEHP------------------GCVWDAKFLE-NGD-IVTACSDGVTRIWTVHSDKVADSL------EL-------EA  111 (563)
Q Consensus        65 ~~l~h~------------------~~V~~v~~~p-~g~-i~sgs~Dg~Irvwd~~~~~~~~~~------~~-------~~  111 (563)
                      .++...                  ..-+.|+++| +|. .++.+.++.|++||..++......      ..       ..
T Consensus       659 ~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~  738 (1057)
T PLN02919        659 RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTS  738 (1057)
T ss_pred             EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCcccccc
Confidence            665310                  1347899999 566 577778899999999877532100      00       00


Q ss_pred             cccc--------cceeEEeeccCCceEEEeCCCCceeeec--------------------------------ccCCCeEE
Q 008510          112 YASE--------LSQYKLCRKKVGGLKLEDLPGLEALQIP--------------------------------GTNAGQTK  151 (563)
Q Consensus       112 ~~~~--------v~~~~~~~~~~~~i~~~d~~~~~~l~~~--------------------------------g~~dg~~~  151 (563)
                      +...        -..+.++...++.|++||+.+.......                                ..++|.+.
T Consensus       739 ~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LY  818 (1057)
T PLN02919        739 FAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIY  818 (1057)
T ss_pred             ccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEE
Confidence            0000        0113444555688999998754322111                                12334433


Q ss_pred             EEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHHHH
Q 008510          152 VVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAADK  226 (563)
Q Consensus       152 l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~~  226 (563)
                      +.... +..+..||..++....+.. .+..+..++. ...+ ..+....+.+ ++|+....-..|..++.|+..++
T Consensus       819 VADs~-N~rIrviD~~tg~v~tiaG-~G~~G~~dG~-~~~a-~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~  890 (1057)
T PLN02919        819 VADSY-NHKIKKLDPATKRVTTLAG-TGKAGFKDGK-ALKA-QLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG  890 (1057)
T ss_pred             EEECC-CCEEEEEECCCCeEEEEec-cCCcCCCCCc-cccc-ccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence            33322 2445566655544332210 0000000000 0111 1234566777 78887777788888999987543

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.53  E-value=0.0034  Score=66.51  Aligned_cols=101  Identities=15%  Similarity=0.087  Sum_probs=63.5

Q ss_pred             CCCEEEEEEC-----CCcEEEEcC-C---CceeEEEecCCCcEEEEEEcCCC-eEEEEe-CCCcEEEEc---C--CceeE
Q 008510            2 PGVGIISASH-----DCTIRLWAL-T---GQVLMEMVGHTAIVYSIDSHASG-LIVSGS-EDRFAKIWK---D--GVCVQ   65 (563)
Q Consensus         2 ~g~~l~s~s~-----DgtIrlWd~-~---g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s-~D~tvriWd---~--~~~~~   65 (563)
                      ||+.|+..+.     |..+..|++ .   ++..+...++.+.....+|+||| .++..+ .++...||.   .  +...+
T Consensus       241 DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~  320 (428)
T PRK01029        241 RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR  320 (428)
T ss_pred             CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceE
Confidence            5777776553     223444776 3   23333333433455678999999 555544 577767775   2  33345


Q ss_pred             EEe-cCCcEEEEEEccCCc-EEEEeCC---CcEEEEEcCCCc
Q 008510           66 SIE-HPGCVWDAKFLENGD-IVTACSD---GVTRIWTVHSDK  102 (563)
Q Consensus        66 ~l~-h~~~V~~v~~~p~g~-i~sgs~D---g~Irvwd~~~~~  102 (563)
                      .+. +...+.+..|+|||+ |+..+.+   ..|.+||+.+++
T Consensus       321 ~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~  362 (428)
T PRK01029        321 LLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR  362 (428)
T ss_pred             EeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence            555 445778899999999 6655443   368899988776

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=97.52  E-value=0.00027  Score=69.02  Aligned_cols=135  Identities=13%  Similarity=0.155  Sum_probs=88.4

Q ss_pred             EEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-------CCceeEEEecCCcEEEEEEc
Q 008510            8 SASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-------DGVCVQSIEHPGCVWDAKFL   79 (563)
Q Consensus         8 s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-------~~~~~~~l~h~~~V~~v~~~   79 (563)
                      +.|.+-.|-+-++.+..-..|. ..+.|.++.|...+ .+..|+..|.|...|       .+.+.+.+.|+..|+++...
T Consensus       229 s~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~L  307 (425)
T KOG2695|consen  229 SVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQIL  307 (425)
T ss_pred             cccccceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhh
Confidence            3444555666665332223333 45667888888766 889999999999999       36788889999999999998


Q ss_pred             c-CCc-EEEEeCCCcEEEEEcCCCcee-ceeeeccccc----------ccceeEEeeccCCceEEEeCCCCceeeec
Q 008510           80 E-NGD-IVTACSDGVTRIWTVHSDKVA-DSLELEAYAS----------ELSQYKLCRKKVGGLKLEDLPGLEALQIP  143 (563)
Q Consensus        80 p-~g~-i~sgs~Dg~Irvwd~~~~~~~-~~~~~~~~~~----------~v~~~~~~~~~~~~i~~~d~~~~~~l~~~  143 (563)
                      . ++. +.+.+.+|+|++||.|.-++- .....++|.+          .-...+++.+.|--.++|.+..+..+...
T Consensus       308 q~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti  384 (425)
T KOG2695|consen  308 QFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI  384 (425)
T ss_pred             ccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence            8 555 888899999999999866531 1112222221          12244455555556666666655555433

>PRK04792 tolB translocation protein TolB; Provisional

Probab=97.51  E-value=0.0036  Score=66.84  Aligned_cols=100  Identities=14%  Similarity=0.108  Sum_probs=62.2

Q ss_pred             CCCEEEEEECC-C--cEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eE-EEEeCCCc--EEEEc-CCceeEEEe-cCC
Q 008510            2 PGVGIISASHD-C--TIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LI-VSGSEDRF--AKIWK-DGVCVQSIE-HPG   71 (563)
Q Consensus         2 ~g~~l~s~s~D-g--tIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l-~s~s~D~t--vriWd-~~~~~~~l~-h~~   71 (563)
                      ||+.++..+.+ +  .|.+||+ +|+. ..+....+.....+|+||| .+ ++.+.++.  |.+|| .+.....+. +..
T Consensus       228 DG~~La~~s~~~g~~~L~~~dl~tg~~-~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~  306 (448)
T PRK04792        228 DGRKLAYVSFENRKAEIFVQDIYTQVR-EKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRA  306 (448)
T ss_pred             CCCEEEEEEecCCCcEEEEEECCCCCe-EEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCC
Confidence            57777766543 3  4788888 4543 2333223344578999999 54 45677776  55666 444445555 555


Q ss_pred             cEEEEEEccCCc-EEEEeC-CC--cEEEEEcCCCc
Q 008510           72 CVWDAKFLENGD-IVTACS-DG--VTRIWTVHSDK  102 (563)
Q Consensus        72 ~V~~v~~~p~g~-i~sgs~-Dg--~Irvwd~~~~~  102 (563)
                      .....+|+|||+ |+..+. ++  .|.++|+.+++
T Consensus       307 ~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~  341 (448)
T PRK04792        307 IDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK  341 (448)
T ss_pred             CccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            678899999998 654443 34  45666666654

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.46  E-value=0.016  Score=60.37  Aligned_cols=207  Identities=18%  Similarity=0.149  Sum_probs=116.2

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKF   78 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~~   78 (563)
                      .|+.++.++.+|.|.-+|. +|+.+....-......+.... ++.++.++.|+.+..+|  +|+.+......+.+.+.-.
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~-~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~  142 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGAD-GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL  142 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEc-CCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence            3667888889999999998 899887766444322233332 34777888999999999  7888777664444433222


Q ss_pred             ccCCcEEEEeCCCcEEEEEcCCCceeceeeecc-------ccc--ccceeEEeeccCCceEEEeCCCCceeeec--c---
Q 008510           79 LENGDIVTACSDGVTRIWTVHSDKVADSLELEA-------YAS--ELSQYKLCRKKVGGLKLEDLPGLEALQIP--G---  144 (563)
Q Consensus        79 ~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~-------~~~--~v~~~~~~~~~~~~i~~~d~~~~~~l~~~--g---  144 (563)
                      ..++.++.++.||.++.||.++++..-......       ...  ......+.+..++.+..+|..+++.+-..  +   
T Consensus       143 v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~  222 (377)
T TIGR03300       143 VANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPK  222 (377)
T ss_pred             EECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCC
Confidence            224557778889999999999887432111110       000  01123344555567777776555432110  0   


Q ss_pred             -------------cC--CCeEEEEecCCCeEEEEEecccce--EEEeCcEeeCCCCCCCceeecCcccCcEEEEEcCCCC
Q 008510          145 -------------TN--AGQTKVVREGDNGVAYSWDMKEQK--WDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGE  207 (563)
Q Consensus       145 -------------~~--dg~~~l~~~~~~~~~~~wd~~~~~--w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~~dg~  207 (563)
                                   ++  .+...++.+. ++.++.+|..++.  |..-........ -....+|.+...+.++.++..+|+
T Consensus       223 g~~~~~~~~~~~~~p~~~~~~vy~~~~-~g~l~a~d~~tG~~~W~~~~~~~~~p~-~~~~~vyv~~~~G~l~~~d~~tG~  300 (377)
T TIGR03300       223 GRTELERLVDVDGDPVVDGGQVYAVSY-QGRVAALDLRSGRVLWKRDASSYQGPA-VDDNRLYVTDADGVVVALDRRSGS  300 (377)
T ss_pred             CCCchhhhhccCCccEEECCEEEEEEc-CCEEEEEECCCCcEEEeeccCCccCce-EeCCEEEEECCCCeEEEEECCCCc
Confidence                         00  1112222222 3456667766553  543210000000 013455555555678888887776


Q ss_pred             eeee
Q 008510          208 PTRK  211 (563)
Q Consensus       208 ~~~~  211 (563)
                      .+.+
T Consensus       301 ~~W~  304 (377)
T TIGR03300       301 ELWK  304 (377)
T ss_pred             EEEc
Confidence            5543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>smart00320 WD40 WD40 repeats

Probab=97.45  E-value=0.00038  Score=44.81  Aligned_cols=38  Identities=34%  Similarity=0.610  Sum_probs=30.1

Q ss_pred             CceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc
Q 008510           22 GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK   59 (563)
Q Consensus        22 g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd   59 (563)
                      ++++..+.+|...|.+++|++++ .+++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            45667777888888888888876 788888888888885

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=97.44  E-value=0.00018  Score=71.54  Aligned_cols=67  Identities=27%  Similarity=0.401  Sum_probs=55.5

Q ss_pred             CCCEEEEEECCCcEEEEcCC-Ccee-EEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEe
Q 008510            2 PGVGIISASHDCTIRLWALT-GQVL-MEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIE   68 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~~-g~~i-~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~   68 (563)
                      |+++++++..|+.||+=... .-.+ .-.-||+.+|..+++-++..++|||.|+++|+||  +|++++++.
T Consensus       162 D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  162 DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEecccCCcccccc
Confidence            57899999999999997762 2222 3346899999999998776789999999999999  899887765

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=97.43  E-value=0.00038  Score=65.56  Aligned_cols=63  Identities=16%  Similarity=0.255  Sum_probs=53.5

Q ss_pred             CCEEEEEECCCcEEEEcC-CC-ceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc-CCceeE
Q 008510            3 GVGIISASHDCTIRLWAL-TG-QVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK-DGVCVQ   65 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g-~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd-~~~~~~   65 (563)
                      ...+++|+.||.+-+||. .. -++..+..|...++-|-|+|..  .+++|++||.+.-|| ++..+.
T Consensus       192 q~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~  259 (319)
T KOG4714|consen  192 QHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLS  259 (319)
T ss_pred             ccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEE
Confidence            457889999999999999 43 4566788999999999999975  899999999999999 655443

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.42  E-value=0.0059  Score=50.68  Aligned_cols=89  Identities=18%  Similarity=0.260  Sum_probs=67.7

Q ss_pred             CEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEcCCceeEEEecCCcEEEEEEcc---
Q 008510            4 VGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKDGVCVQSIEHPGCVWDAKFLE---   80 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd~~~~~~~l~h~~~V~~v~~~p---   80 (563)
                      +.|+.||.|..||+|+- .+++.++.. ++.|.+++-...+.|+.+-+.|||.+++....+..++....+.++.+..   
T Consensus        16 ~eLlvGs~D~~IRvf~~-~e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~RlWRiKSK~~~~~~~~~D~~g   93 (111)
T PF14783_consen   16 NELLVGSDDFEIRVFKG-DEIVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDRSQRLWRIKSKNQVTSMAFYDING   93 (111)
T ss_pred             ceEEEecCCcEEEEEeC-CcEEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeCcceeeeeccCCCeEEEEEEcCCC
Confidence            57999999999999994 467777764 4667788777667999999999999999555556666444566666654   


Q ss_pred             CCc--EEEEeCCCcEE
Q 008510           81 NGD--IVTACSDGVTR   94 (563)
Q Consensus        81 ~g~--i~sgs~Dg~Ir   94 (563)
                      +|.  +++|-++|.|-
T Consensus        94 dG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   94 DGVPELIVGWSNGKVE  109 (111)
T ss_pred             CCceEEEEEecCCeEE
Confidence            343  89999999874

>PRK00178 tolB translocation protein TolB; Provisional

Probab=97.42  E-value=0.0053  Score=65.27  Aligned_cols=100  Identities=15%  Similarity=0.139  Sum_probs=65.1

Q ss_pred             CCCEEEEEECC---CcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEE-EEeCCC--cEEEEc-CCceeEEEe-cCC
Q 008510            2 PGVGIISASHD---CTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIV-SGSEDR--FAKIWK-DGVCVQSIE-HPG   71 (563)
Q Consensus         2 ~g~~l~s~s~D---gtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~-s~s~D~--tvriWd-~~~~~~~l~-h~~   71 (563)
                      ||+.|+..+.+   ..|.+|++ +|+. ..+....+.+...+|+|+| .++ +.+.++  .|.+|| .+...+.+. +..
T Consensus       209 DG~~la~~s~~~~~~~l~~~~l~~g~~-~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~  287 (430)
T PRK00178        209 DGKRIAYVSFEQKRPRIFVQNLDTGRR-EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPA  287 (430)
T ss_pred             CCCEEEEEEcCCCCCEEEEEECCCCCE-EEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCC
Confidence            57788776654   35888898 5543 3344444556678999999 554 566666  467778 444444555 555


Q ss_pred             cEEEEEEccCCc-EEEEeC-CC--cEEEEEcCCCc
Q 008510           72 CVWDAKFLENGD-IVTACS-DG--VTRIWTVHSDK  102 (563)
Q Consensus        72 ~V~~v~~~p~g~-i~sgs~-Dg--~Irvwd~~~~~  102 (563)
                      ......|+|+|+ |+..+. +|  .|+++|+.+++
T Consensus       288 ~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~  322 (430)
T PRK00178        288 IDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR  322 (430)
T ss_pred             CcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            677789999998 655443 33  46777776665

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.39  E-value=0.0047  Score=66.84  Aligned_cols=99  Identities=17%  Similarity=0.208  Sum_probs=74.2

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCC-----C-eEEEEeCCCcEEEEc---CCceeEE-Ee-c
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHAS-----G-LIVSGSEDRFAKIWK---DGVCVQS-IE-H   69 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~-----g-~l~s~s~D~tvriWd---~~~~~~~-l~-h   69 (563)
                      +|.+++|||.||+|.|-.+ +++...++. ...++.+|+++|+     . ++++||.-| +.+..   =+..... +. .
T Consensus        82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~  159 (846)
T KOG2066|consen   82 EGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEG  159 (846)
T ss_pred             CCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecC
Confidence            6899999999999999998 666655543 5578999999997     2 799999988 77766   2222222 33 5


Q ss_pred             CCcEEEEEEccCCcEEEEeCCCcEEEEEcCCCcee
Q 008510           70 PGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVA  104 (563)
Q Consensus        70 ~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~~~~~  104 (563)
                      .+.|.++.|.  |+++.=..|--|+|||+.+++..
T Consensus       160 eG~I~~i~W~--g~lIAWand~Gv~vyd~~~~~~l  192 (846)
T KOG2066|consen  160 EGPIHSIKWR--GNLIAWANDDGVKVYDTPTRQRL  192 (846)
T ss_pred             ccceEEEEec--CcEEEEecCCCcEEEecccccee
Confidence            5699999994  66555555666899999988744

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=97.39  E-value=0.00029  Score=71.64  Aligned_cols=112  Identities=24%  Similarity=0.342  Sum_probs=81.4

Q ss_pred             eeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe--cCCcEEEEEEccCC-c--EEEEeCCCcEEE
Q 008510           24 VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE--HPGCVWDAKFLENG-D--IVTACSDGVTRI   95 (563)
Q Consensus        24 ~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~--h~~~V~~v~~~p~g-~--i~sgs~Dg~Irv   95 (563)
                      ....|.+|.++|..|.|+..| .++|||.|..|.+||  .++....+.  |...|..-.|.|.. +  |++++.||.||+
T Consensus       134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~  213 (559)
T KOG1334|consen  134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV  213 (559)
T ss_pred             hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence            345688999999999999999 999999999999999  666666665  77788888899953 3  999999999999


Q ss_pred             EEcCC-CceeceeeecccccccceeEE---------eeccCCceEEEeCC
Q 008510           96 WTVHS-DKVADSLELEAYASELSQYKL---------CRKKVGGLKLEDLP  135 (563)
Q Consensus        96 wd~~~-~~~~~~~~~~~~~~~v~~~~~---------~~~~~~~i~~~d~~  135 (563)
                      =.+.. +.+.....+..|.+.+...++         +.+.++.+.-.|++
T Consensus       214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr  263 (559)
T KOG1334|consen  214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLR  263 (559)
T ss_pred             eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeec
Confidence            77643 333334445555555543332         34445555555554

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.36  E-value=0.054  Score=56.41  Aligned_cols=210  Identities=13%  Similarity=0.108  Sum_probs=119.3

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEE-
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAK-   77 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~-   77 (563)
                      +++.++.++.|+.+..+|. +|+.+...... +.+.+.-...++.++.++.|+.+..||  +|+.+..+........+. 
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~  182 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRG  182 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecC
Confidence            4677888889999999999 89988776533 223321111244666777899999999  788877766332211111 


Q ss_pred             ----EccCCcEEEEeCCCcEEEEEcCCCceeceeeecc------------cccc---cceeEEeeccCCceEEEeCCCCc
Q 008510           78 ----FLENGDIVTACSDGVTRIWTVHSDKVADSLELEA------------YASE---LSQYKLCRKKVGGLKLEDLPGLE  138 (563)
Q Consensus        78 ----~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~------------~~~~---v~~~~~~~~~~~~i~~~d~~~~~  138 (563)
                          ...++.++.+..++.+..+|.++++..-......            +...   .....+....++.+..+|..+++
T Consensus       183 ~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~  262 (377)
T TIGR03300       183 SASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGR  262 (377)
T ss_pred             CCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCc
Confidence                1114457888889999999999887432211110            0000   12334445566788888876554


Q ss_pred             eeeec--c-----cCCCeEEEEecCCCeEEEEEecccc--eEEEe---CcEeeCCCCCCCceeecCcccCcEEEEEcCCC
Q 008510          139 ALQIP--G-----TNAGQTKVVREGDNGVAYSWDMKEQ--KWDKL---GEVVDGPDDGMNRPILDGIQYDYVFDVDIGDG  206 (563)
Q Consensus       139 ~l~~~--g-----~~dg~~~l~~~~~~~~~~~wd~~~~--~w~~~---g~v~~~~~~~~~~~~~~g~~~d~v~~vd~~dg  206 (563)
                      .+-..  +     ..++....+.. .++.++.+|..++  .|...   +.....+.. .+..+|.+...++++.++..+|
T Consensus       263 ~~W~~~~~~~~~p~~~~~~vyv~~-~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i-~g~~l~~~~~~G~l~~~d~~tG  340 (377)
T TIGR03300       263 VLWKRDASSYQGPAVDDNRLYVTD-ADGVVVALDRRSGSELWKNDELKYRQLTAPAV-VGGYLVVGDFEGYLHWLSREDG  340 (377)
T ss_pred             EEEeeccCCccCceEeCCEEEEEC-CCCeEEEEECCCCcEEEccccccCCccccCEE-ECCEEEEEeCCCEEEEEECCCC
Confidence            33211  0     01222223333 3356677777655  36531   111111100 1345666666678888888778


Q ss_pred             CeeeeecC
Q 008510          207 EPTRKLPY  214 (563)
Q Consensus       207 ~~~~~~~~  214 (563)
                      +.+.+.+.
T Consensus       341 ~~~~~~~~  348 (377)
T TIGR03300       341 SFVARLKT  348 (377)
T ss_pred             CEEEEEEc
Confidence            77666543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=97.36  E-value=0.0019  Score=67.18  Aligned_cols=100  Identities=12%  Similarity=0.196  Sum_probs=75.5

Q ss_pred             CEEEEEECCCcEEEEcC-CCceeEEEe------cCCCc-----EEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe
Q 008510            4 VGIISASHDCTIRLWAL-TGQVLMEMV------GHTAI-----VYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE   68 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~-~g~~i~~l~------gH~~~-----V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~   68 (563)
                      .+|++|+.||.|-.||. ....+.++.      .|.+.     |+++.|+.+| .++.|..+|.|.|+|  ..+++..-.
T Consensus       188 gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kd  267 (703)
T KOG2321|consen  188 GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKD  267 (703)
T ss_pred             ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecc
Confidence            35777777999999998 544444443      34443     9999999999 899999999999999  555554444


Q ss_pred             cCC--cEEEEEEccCCc--EEEEeCCCcEEEEEcCCCce
Q 008510           69 HPG--CVWDAKFLENGD--IVTACSDGVTRIWTVHSDKV  103 (563)
Q Consensus        69 h~~--~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~  103 (563)
                      |..  +|..+.|.+.+.  -+..+....+++||-.+|+.
T Consensus       268 h~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~  306 (703)
T KOG2321|consen  268 HGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKP  306 (703)
T ss_pred             cCCccceeeecccccCCCceEEecchHHhhhcccccCCc
Confidence            654  899999988643  45555667899999999883

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=97.33  E-value=0.023  Score=58.83  Aligned_cols=139  Identities=16%  Similarity=0.079  Sum_probs=88.3

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-e-EEEEeCCCcEEEEc--CCceeEEEe---c----
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-L-IVSGSEDRFAKIWK--DGVCVQSIE---H----   69 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~-l~s~s~D~tvriWd--~~~~~~~l~---h----   69 (563)
                      ||++++.++.||.|.++|+ +++.++++..-. .-.++++++|| + ++++..++++.|+|  +.+.++.+.   .    
T Consensus        47 Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~  125 (369)
T PF02239_consen   47 DGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDG  125 (369)
T ss_dssp             -SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTT
T ss_pred             CCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccc
Confidence            5889999999999999999 899999987544 45789999999 4 55667889999999  778888876   1    


Q ss_pred             -CCcEEEEEEccCCc-EEEEeCC-CcEEEEEcCCCceeceeeec-------ccccccceeEE-eeccCCceEEEeCCCCc
Q 008510           70 -PGCVWDAKFLENGD-IVTACSD-GVTRIWTVHSDKVADSLELE-------AYASELSQYKL-CRKKVGGLKLEDLPGLE  138 (563)
Q Consensus        70 -~~~V~~v~~~p~g~-i~sgs~D-g~Irvwd~~~~~~~~~~~~~-------~~~~~v~~~~~-~~~~~~~i~~~d~~~~~  138 (563)
                       ...+..+..+|... ++..-.| +.|-+-|....+......+.       ..-..-..+.+ .....+.+-++|..+..
T Consensus       126 ~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k  205 (369)
T PF02239_consen  126 PESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK  205 (369)
T ss_dssp             S---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred             cCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccce
Confidence             12677888888777 5555454 77777787665422211111       11111223333 34455688888887765


Q ss_pred             eee
Q 008510          139 ALQ  141 (563)
Q Consensus       139 ~l~  141 (563)
                      ...
T Consensus       206 ~v~  208 (369)
T PF02239_consen  206 LVA  208 (369)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

...

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.29  E-value=0.001  Score=65.07  Aligned_cols=100  Identities=18%  Similarity=0.283  Sum_probs=72.6

Q ss_pred             CCEEEEEECCCcEEEEcC-C-Cc----------------------------------eeEEE-ecCCCcEEEEEEcCCCe
Q 008510            3 GVGIISASHDCTIRLWAL-T-GQ----------------------------------VLMEM-VGHTAIVYSIDSHASGL   45 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~-g~----------------------------------~i~~l-~gH~~~V~~v~~~p~g~   45 (563)
                      +..|+...+|.+|++|.+ . +.                                  |.+.+ .+|+..|.+++++.|+.
T Consensus        98 ~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E  177 (433)
T KOG1354|consen   98 LAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE  177 (433)
T ss_pred             ccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc
Confidence            356788889999999987 1 10                                  11222 36889999999999984


Q ss_pred             EEEEeCCCcEEEEc---CCceeEEEe-c-------CCcEEEEEEccCCc--EEEEeCCCcEEEEEcCCCc
Q 008510           46 IVSGSEDRFAKIWK---DGVCVQSIE-H-------PGCVWDAKFLENGD--IVTACSDGVTRIWTVHSDK  102 (563)
Q Consensus        46 l~s~s~D~tvriWd---~~~~~~~l~-h-------~~~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~  102 (563)
                      ..-+..|-.|.+|+   ..++..... .       +.-|++-.|+|..-  ++-.++.|+||+-|+|..-
T Consensus       178 t~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~a  247 (433)
T KOG1354|consen  178 TFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSA  247 (433)
T ss_pred             eEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhh
Confidence            44446788999999   445443332 2       23588999999644  7888999999999999653

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=97.22  E-value=0.00042  Score=67.20  Aligned_cols=100  Identities=16%  Similarity=0.188  Sum_probs=73.0

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWD   75 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~   75 (563)
                      +|+++|+++.- .+-|-|. +-+..+.+. --+.|.-+.|..|.  .+.....|+.|.+|+  ..+--..+. .++++.+
T Consensus        19 ~g~yiAs~~~y-rlviRd~~tlq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~   96 (447)
T KOG4497|consen   19 CGNYIASLSRY-RLVIRDSETLQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSS   96 (447)
T ss_pred             CCCeeeeeeee-EEEEeccchhhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCccee
Confidence            58899999755 6777776 333222221 12445667788777  566678899999999  555555666 6779999


Q ss_pred             EEEccCCc--EEEEeCCCcEEEEEcCCCce
Q 008510           76 AKFLENGD--IVTACSDGVTRIWTVHSDKV  103 (563)
Q Consensus        76 v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~  103 (563)
                      ++|+|+|+  +.+..-|-.|.||.+.+.+.
T Consensus        97 ~~WSPdgrhiL~tseF~lriTVWSL~t~~~  126 (447)
T KOG4497|consen   97 ISWSPDGRHILLTSEFDLRITVWSLNTQKG  126 (447)
T ss_pred             eeECCCcceEeeeecceeEEEEEEecccee
Confidence            99999998  56777899999999998763

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=97.21  E-value=0.0015  Score=63.89  Aligned_cols=83  Identities=20%  Similarity=0.424  Sum_probs=68.5

Q ss_pred             CceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCc--eeEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEE
Q 008510           22 GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGV--CVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRI   95 (563)
Q Consensus        22 g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~--~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irv   95 (563)
                      -.++.++.+|.+.+++++|.|.. .+.||..|..+.+|| .+.  ....+. |.+.|..+...+--+ +.+++.||.|-+
T Consensus       187 ~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~  266 (404)
T KOG1409|consen  187 CQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVV  266 (404)
T ss_pred             CceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEE
Confidence            35678899999999999999976 999999999999999 332  223333 888999988887666 899999999999


Q ss_pred             EEcCCCcee
Q 008510           96 WTVHSDKVA  104 (563)
Q Consensus        96 wd~~~~~~~  104 (563)
                      |+.+-.+..
T Consensus       267 w~mn~~r~e  275 (404)
T KOG1409|consen  267 WNMNVKRVE  275 (404)
T ss_pred             Eeccceeec
Confidence            999877643

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.19  E-value=0.066  Score=54.88  Aligned_cols=99  Identities=21%  Similarity=0.157  Sum_probs=77.3

Q ss_pred             CCCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCC-cEEEEc-CCceeEEEe-cCCcEEE
Q 008510            1 MPGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDR-FAKIWK-DGVCVQSIE-HPGCVWD   75 (563)
Q Consensus         1 ~~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~-tvriWd-~~~~~~~l~-h~~~V~~   75 (563)
                      ++|++++..| -|...+.+. .|-.++  -+|.+.|.-..+..++ .++.|..|| .+-|+| .+..+..+. .-+.|-+
T Consensus       330 ~~Gd~ia~VS-RGkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~a  406 (668)
T COG4946         330 VNGDYIALVS-RGKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEA  406 (668)
T ss_pred             CCCcEEEEEe-cCcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEE
Confidence            4788888888 456788877 454443  3788889888887776 788899998 899999 666666665 5568999


Q ss_pred             EEEccCCc-EEEEeCCCcEEEEEcCCCc
Q 008510           76 AKFLENGD-IVTACSDGVTRIWTVHSDK  102 (563)
Q Consensus        76 v~~~p~g~-i~sgs~Dg~Irvwd~~~~~  102 (563)
                      |+.+|+|. ++.+-....+-+.|++++.
T Consensus       407 v~vs~dGK~~vvaNdr~el~vididngn  434 (668)
T COG4946         407 VKVSPDGKKVVVANDRFELWVIDIDNGN  434 (668)
T ss_pred             EEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence            99999999 6777666788888999886

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=97.18  E-value=0.016  Score=55.12  Aligned_cols=97  Identities=18%  Similarity=0.115  Sum_probs=73.0

Q ss_pred             EEEEEECCCcEEEEcCCCceeEEEecCCCc--EEEEEEcCCC-eEEEEeCCCcEEEEc---CCceeEEEe---cCCcEEE
Q 008510            5 GIISASHDCTIRLWALTGQVLMEMVGHTAI--VYSIDSHASG-LIVSGSEDRFAKIWK---DGVCVQSIE---HPGCVWD   75 (563)
Q Consensus         5 ~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~--V~~v~~~p~g-~l~s~s~D~tvriWd---~~~~~~~l~---h~~~V~~   75 (563)
                      .+.-|++|.|+++.++++...+.. -|...  +.++++++++ .+++.|.-+.|..|.   +++.+..+.   ..+.=.+
T Consensus       130 ~~~i~sndht~k~~~~~~~s~~~~-~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~  208 (344)
T KOG4532|consen  130 PLNIASNDHTGKTMVVSGDSNKFA-VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFY  208 (344)
T ss_pred             ceeeccCCcceeEEEEecCcccce-eeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCcee
Confidence            356689999999999966544332 24433  7899999999 778888888888887   444433333   4446778


Q ss_pred             EEEccCCc-EEEEeCCCcEEEEEcCCCc
Q 008510           76 AKFLENGD-IVTACSDGVTRIWTVHSDK  102 (563)
Q Consensus        76 v~~~p~g~-i~sgs~Dg~Irvwd~~~~~  102 (563)
                      .+|+.+.. +|++..||++.|||+|...
T Consensus       209 ~S~s~~~~~FAv~~Qdg~~~I~DVR~~~  236 (344)
T KOG4532|consen  209 NSFSENDLQFAVVFQDGTCAIYDVRNMA  236 (344)
T ss_pred             eeeccCcceEEEEecCCcEEEEEecccc
Confidence            89998877 9999999999999999876

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.12  E-value=0.001  Score=70.59  Aligned_cols=100  Identities=16%  Similarity=0.260  Sum_probs=77.1

Q ss_pred             CCEEEEEECCCcEEEEcC-C----C-----------ceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCce
Q 008510            3 GVGIISASHDCTIRLWAL-T----G-----------QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVC   63 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~----g-----------~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~   63 (563)
                      ..++++||.||.+++-.+ +    +           ..-+++.||.+.|.-+.|+.+. .+-|+.++|-|.||-  .+.-
T Consensus        26 ~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW  105 (1189)
T KOG2041|consen   26 SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSW  105 (1189)
T ss_pred             CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccH
Confidence            468999999999999876 1    1           1225789999999999999887 899999999999998  5543


Q ss_pred             eEEEe---cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCc
Q 008510           64 VQSIE---HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDK  102 (563)
Q Consensus        64 ~~~l~---h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~  102 (563)
                      ...+.   ....|.+++|+.+|. |+..-.||.|-|=+++..|
T Consensus       106 ~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR  148 (1189)
T KOG2041|consen  106 CEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR  148 (1189)
T ss_pred             HHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce
Confidence            32222   445799999999887 7777777777776666554

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.12  E-value=0.015  Score=68.48  Aligned_cols=100  Identities=14%  Similarity=0.122  Sum_probs=68.4

Q ss_pred             CCEEEEEECCCcEEEEcCCCceeEEEecC---------C------CcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCce
Q 008510            3 GVGIISASHDCTIRLWALTGQVLMEMVGH---------T------AIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVC   63 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~~g~~i~~l~gH---------~------~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~   63 (563)
                      |..+++.+.++.|++||.....+.++.|.         .      .....++++|+|  .+++-+.+++|++||  ++..
T Consensus       695 g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~  774 (1057)
T PLN02919        695 EKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS  774 (1057)
T ss_pred             CeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE
Confidence            56678888889999999833333344322         1      234569999997  566777789999999  3332


Q ss_pred             eEEEe---------------c--------CCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCce
Q 008510           64 VQSIE---------------H--------PGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKV  103 (563)
Q Consensus        64 ~~~l~---------------h--------~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~  103 (563)
                       ..+.               +        -..-..+++.++|+ +++-..++.|++||..++..
T Consensus       775 -~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v  837 (1057)
T PLN02919        775 -RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRV  837 (1057)
T ss_pred             -EEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeE
Confidence             1111               0        01235888999999 67778889999999988763

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.08  E-value=0.0013  Score=65.56  Aligned_cols=88  Identities=11%  Similarity=0.127  Sum_probs=71.5

Q ss_pred             EEEEcC-CCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEEEccCCc--EEEE
Q 008510           15 IRLWAL-TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKFLENGD--IVTA   87 (563)
Q Consensus        15 IrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~~~p~g~--i~sg   87 (563)
                      |++.+. +.+...-+.+|...|.+++|+|..  .+..++.+.+++|.|  +..++.++.....+|+++|.-|..  |..|
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaG  254 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAG  254 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEe
Confidence            444444 444445567888999999999964  688999999999999  667777777668999999998766  8899


Q ss_pred             eCCCcEEEEEcCCCc
Q 008510           88 CSDGVTRIWTVHSDK  102 (563)
Q Consensus        88 s~Dg~Irvwd~~~~~  102 (563)
                      -..|.|.|||++..+
T Consensus       255 l~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  255 LQNGMVLVYDMRQPE  269 (463)
T ss_pred             ccCceEEEEEccCCC
Confidence            999999999999765

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=97.02  E-value=0.24  Score=50.93  Aligned_cols=98  Identities=13%  Similarity=0.132  Sum_probs=64.1

Q ss_pred             CCCEEEEEE-CCCcEEEEcC--CCceeEE--Eec-----------CCCcEEEEEEcCCC-eEEE-EeCCCcEEEEc-C-C
Q 008510            2 PGVGIISAS-HDCTIRLWAL--TGQVLME--MVG-----------HTAIVYSIDSHASG-LIVS-GSEDRFAKIWK-D-G   61 (563)
Q Consensus         2 ~g~~l~s~s-~DgtIrlWd~--~g~~i~~--l~g-----------H~~~V~~v~~~p~g-~l~s-~s~D~tvriWd-~-~   61 (563)
                      +|++++++. .+|+|.++++  +|.+...  ...           -....+++.++|+| .++. .-....|++|+ + .
T Consensus        97 ~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~  176 (345)
T PF10282_consen   97 DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDD  176 (345)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TT
T ss_pred             CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCC
Confidence            467777776 4899999999  3544332  111           13557899999998 4444 33344688888 2 2


Q ss_pred             --ce--eEEEe--cCCcEEEEEEccCCc-E-EEEeCCCcEEEEEcC
Q 008510           62 --VC--VQSIE--HPGCVWDAKFLENGD-I-VTACSDGVTRIWTVH   99 (563)
Q Consensus        62 --~~--~~~l~--h~~~V~~v~~~p~g~-i-~sgs~Dg~Irvwd~~   99 (563)
                        +.  ...+.  ....-+.++|+|+|+ + ++.-.+++|.+|++.
T Consensus       177 ~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~  222 (345)
T PF10282_consen  177 TGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYD  222 (345)
T ss_dssp             S-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             CceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence              22  23344  334889999999998 4 566678899999998

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.94  E-value=0.049  Score=52.42  Aligned_cols=103  Identities=20%  Similarity=0.143  Sum_probs=70.4

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEE-e-c-C-C-cE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSI-E-H-P-G-CV   73 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l-~-h-~-~-~V   73 (563)
                      ++..+++++.++.+..||. +|+.+.++.......... ...++.++.++.|+.++.+|  +|+.+... . . + . ..
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~  113 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVR  113 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eecccccccccceeeeEecccCCcceeeeeccccccccccc
Confidence            4677888899999999998 999988877522211112 22344666677888999999  89988874 3 2 1 1 12


Q ss_pred             EEEEEccCCc-EEEEeCCCcEEEEEcCCCceec
Q 008510           74 WDAKFLENGD-IVTACSDGVTRIWTVHSDKVAD  105 (563)
Q Consensus        74 ~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~  105 (563)
                      ........++ ++.++.++.|..+|.++|+..-
T Consensus       114 ~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w  146 (238)
T PF13360_consen  114 SSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLW  146 (238)
T ss_dssp             --SEEEEETTEEEEEETCSEEEEEETTTTEEEE
T ss_pred             cccCceEecCEEEEEeccCcEEEEecCCCcEEE
Confidence            2222222355 8888889999999999998643

...

>smart00320 WD40 WD40 repeats

Probab=96.92  E-value=0.0025  Score=40.77  Aligned_cols=37  Identities=27%  Similarity=0.660  Sum_probs=31.5

Q ss_pred             CceeEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEE
Q 008510           61 GVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWT   97 (563)
Q Consensus        61 ~~~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd   97 (563)
                      ++++..+. |...|+++.|.+++. +++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            34566666 778999999999877 89999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=96.91  E-value=0.00082  Score=71.62  Aligned_cols=77  Identities=27%  Similarity=0.471  Sum_probs=62.7

Q ss_pred             EEEECCCcEEEEcC--CCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc----CCceeEEEecCCcEEEEEE
Q 008510            7 ISASHDCTIRLWAL--TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK----DGVCVQSIEHPGCVWDAKF   78 (563)
Q Consensus         7 ~s~s~DgtIrlWd~--~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd----~~~~~~~l~h~~~V~~v~~   78 (563)
                      ...+....|++||.  .+.++..+++|...|++++|+.--  .+.+++.||+|+.||    +.+..++++....||--.+
T Consensus       174 lasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~  253 (1081)
T KOG0309|consen  174 LASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRY  253 (1081)
T ss_pred             hhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccc
Confidence            34567788999999  578899999999999999998643  899999999999999    3344455556668999999


Q ss_pred             ccCCc
Q 008510           79 LENGD   83 (563)
Q Consensus        79 ~p~g~   83 (563)
                      .|-|+
T Consensus       254 ~Pfg~  258 (1081)
T KOG0309|consen  254 LPFGE  258 (1081)
T ss_pred             cccCc
Confidence            99665

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=96.80  E-value=0.023  Score=54.05  Aligned_cols=101  Identities=9%  Similarity=-0.006  Sum_probs=74.1

Q ss_pred             CCCEEEEEECCCcEEEEcC--CCc-eeEEE-ecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc---CCceeEEEe-----
Q 008510            2 PGVGIISASHDCTIRLWAL--TGQ-VLMEM-VGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK---DGVCVQSIE-----   68 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~--~g~-~i~~l-~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd---~~~~~~~l~-----   68 (563)
                      |+++.++.+....|..|.+  +++ .+++. ..-++.=.+.+|+... .+|++..||++-|||   .+.+..++.     
T Consensus       169 d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~  248 (344)
T KOG4532|consen  169 DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPH  248 (344)
T ss_pred             CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCC
Confidence            5678888888889999998  444 34423 3334445678898877 999999999999999   344444332     


Q ss_pred             cCCcEEEEEEccCCc--EE-EEeCCCcEEEEEcCCCc
Q 008510           69 HPGCVWDAKFLENGD--IV-TACSDGVTRIWTVHSDK  102 (563)
Q Consensus        69 h~~~V~~v~~~p~g~--i~-sgs~Dg~Irvwd~~~~~  102 (563)
                      |.+.++.+.|++.|-  ++ ..=.=+.+.|-|+|+++
T Consensus       249 hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~  285 (344)
T KOG4532|consen  249 HNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV  285 (344)
T ss_pred             CCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence            778999999998764  33 33334788999999887

>PRK01029 tolB translocation protein TolB; Provisional

Probab=96.76  E-value=0.016  Score=61.38  Aligned_cols=101  Identities=13%  Similarity=0.077  Sum_probs=66.2

Q ss_pred             CCCEEEEEE-CCCcEEEEcC--C--CceeEEEecCCCcEEEEEEcCCC-eEEEEeCC---CcEEEEc-CCceeEEEe-cC
Q 008510            2 PGVGIISAS-HDCTIRLWAL--T--GQVLMEMVGHTAIVYSIDSHASG-LIVSGSED---RFAKIWK-DGVCVQSIE-HP   70 (563)
Q Consensus         2 ~g~~l~s~s-~DgtIrlWd~--~--g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D---~tvriWd-~~~~~~~l~-h~   70 (563)
                      ||+.|+..+ .+|..++|.+  +  +.....+..+...+.+..|+||| .++..+.+   ..|.+|| .+...+.+. ..
T Consensus       291 DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~  370 (428)
T PRK01029        291 DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSP  370 (428)
T ss_pred             CCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCC
Confidence            577777665 4676666654  2  33445565566677889999999 66655433   3588999 444445555 43


Q ss_pred             CcEEEEEEccCCc-EEEEe-C--CCcEEEEEcCCCc
Q 008510           71 GCVWDAKFLENGD-IVTAC-S--DGVTRIWTVHSDK  102 (563)
Q Consensus        71 ~~V~~v~~~p~g~-i~sgs-~--Dg~Irvwd~~~~~  102 (563)
                      ..+.+..|+|||+ |+..+ .  +..|++||+.+++
T Consensus       371 ~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~  406 (428)
T PRK01029        371 ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKK  406 (428)
T ss_pred             CCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            4678899999998 55333 2  3467788887765

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=96.75  E-value=0.0057  Score=59.12  Aligned_cols=99  Identities=14%  Similarity=0.272  Sum_probs=66.8

Q ss_pred             CCEEEEEECCCcEEEEcC--CC----ceeEEEecCCC------------cEEEEEEcCCC---eEEEEeCCCcEEEEc--
Q 008510            3 GVGIISASHDCTIRLWAL--TG----QVLMEMVGHTA------------IVYSIDSHASG---LIVSGSEDRFAKIWK--   59 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~--~g----~~i~~l~gH~~------------~V~~v~~~p~g---~l~s~s~D~tvriWd--   59 (563)
                      |.++++|...|.|-++.-  ..    +...++++|..            .|..+.|..++   .+.-.+.|+++++|.  
T Consensus        38 g~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiy  117 (460)
T COG5170          38 GLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIY  117 (460)
T ss_pred             cceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeee
Confidence            678999988899999976  22    33455777763            25667776553   677778999999997  


Q ss_pred             CC-------------------ce-----------------------eEEEe--cCCcEEEEEEccCCcEEEEeCCCcEEE
Q 008510           60 DG-------------------VC-----------------------VQSIE--HPGCVWDAKFLENGDIVTACSDGVTRI   95 (563)
Q Consensus        60 ~~-------------------~~-----------------------~~~l~--h~~~V~~v~~~p~g~i~sgs~Dg~Irv   95 (563)
                      ..                   ..                       -+...  |+..+.+++|..+....-.+.|=.|.+
T Consensus       118 eknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINL  197 (460)
T COG5170         118 EKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSADDLRINL  197 (460)
T ss_pred             cccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeeccceeeee
Confidence            11                   00                       01111  566677888887777555566778888


Q ss_pred             EEcCCC
Q 008510           96 WTVHSD  101 (563)
Q Consensus        96 wd~~~~  101 (563)
                      |++.-.
T Consensus       198 Wnl~i~  203 (460)
T COG5170         198 WNLEII  203 (460)
T ss_pred             cccccc
Confidence            887643

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=96.72  E-value=0.051  Score=56.79  Aligned_cols=88  Identities=25%  Similarity=0.249  Sum_probs=61.9

Q ss_pred             cEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eE--EEEeCCCcEEEEc-CCceeEEEecCCcEEEEEEccCCc-EEEEe
Q 008510           14 TIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LI--VSGSEDRFAKIWK-DGVCVQSIEHPGCVWDAKFLENGD-IVTAC   88 (563)
Q Consensus        14 tIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l--~s~s~D~tvriWd-~~~~~~~l~h~~~V~~v~~~p~g~-i~sgs   88 (563)
                      ++.+.+.+|+....--...++|+++.|+|+| .|  +-|-.-.++-|+| .+..+..+. ++.-.++-|+|.|+ |+.+|
T Consensus       252 ~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~-egpRN~~~fnp~g~ii~lAG  330 (566)
T KOG2315|consen  252 TLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFP-EGPRNTAFFNPHGNIILLAG  330 (566)
T ss_pred             eEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCC-CCCccceEECCCCCEEEEee
Confidence            4444454433222212247899999999999 44  4456668899999 888876664 34667788999999 56555


Q ss_pred             CC---CcEEEEEcCCCc
Q 008510           89 SD---GVTRIWTVHSDK  102 (563)
Q Consensus        89 ~D---g~Irvwd~~~~~  102 (563)
                      -+   |.+-|||+.+.+
T Consensus       331 FGNL~G~mEvwDv~n~K  347 (566)
T KOG2315|consen  331 FGNLPGDMEVWDVPNRK  347 (566)
T ss_pred             cCCCCCceEEEeccchh
Confidence            54   789999998866

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=96.70  E-value=0.043  Score=56.20  Aligned_cols=104  Identities=14%  Similarity=0.214  Sum_probs=79.5

Q ss_pred             CCCEEEEEECCC-cEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe--cCCcEEEE
Q 008510            2 PGVGIISASHDC-TIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE--HPGCVWDA   76 (563)
Q Consensus         2 ~g~~l~s~s~Dg-tIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~--h~~~V~~v   76 (563)
                      +++.++-|.+|| .+-++|..|..++.+.+.-+.|.++..+|+| .++.+.....+.+.| +....+.+.  ..+-|...
T Consensus       370 ~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf  449 (668)
T COG4946         370 DPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDF  449 (668)
T ss_pred             CCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEE
Confidence            345688899999 8999999777777888888999999999999 566555555677777 434445555  45589999


Q ss_pred             EEccCCc-EEEEeCC----CcEEEEEcCCCceec
Q 008510           77 KFLENGD-IVTACSD----GVTRIWTVHSDKVAD  105 (563)
Q Consensus        77 ~~~p~g~-i~sgs~D----g~Irvwd~~~~~~~~  105 (563)
                      .|+|+++ ||-+--+    ..|++||...++...
T Consensus       450 ~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~  483 (668)
T COG4946         450 DWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD  483 (668)
T ss_pred             EEcCCceeEEEecCcceeeeeEEEEecCCCeEEE
Confidence            9999999 7755444    468999999887543

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=96.52  E-value=0.79  Score=46.93  Aligned_cols=87  Identities=8%  Similarity=0.050  Sum_probs=57.4

Q ss_pred             CCCcEEEEcC-CCceeEEEecC-------CCcEEEEEEcCCC-eEEEEe-C-CCcEEEEc--CCceeEEEecCCcEEEEE
Q 008510           11 HDCTIRLWAL-TGQVLMEMVGH-------TAIVYSIDSHASG-LIVSGS-E-DRFAKIWK--DGVCVQSIEHPGCVWDAK   77 (563)
Q Consensus        11 ~DgtIrlWd~-~g~~i~~l~gH-------~~~V~~v~~~p~g-~l~s~s-~-D~tvriWd--~~~~~~~l~h~~~V~~v~   77 (563)
                      .+..|.+||. +++.++++.--       ...-..++++||| .+.... . +..|-+.|  +++.+..+.-+++.+-+.
T Consensus        75 ~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~  154 (352)
T TIGR02658        75 RTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFP  154 (352)
T ss_pred             CCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEE
Confidence            4789999999 89998888632       2233478899999 555554 3 68899999  888888888665444333


Q ss_pred             EccCCcEEEEeCCCcEEEEEc
Q 008510           78 FLENGDIVTACSDGVTRIWTV   98 (563)
Q Consensus        78 ~~p~g~i~sgs~Dg~Irvwd~   98 (563)
                      .++ ....+-|.||......+
T Consensus       155 t~e-~~~~~~~~Dg~~~~v~~  174 (352)
T TIGR02658       155 TAN-DTFFMHCRDGSLAKVGY  174 (352)
T ss_pred             ecC-CccEEEeecCceEEEEe
Confidence            322 22334455555555444

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=96.32  E-value=0.23  Score=57.62  Aligned_cols=108  Identities=15%  Similarity=0.180  Sum_probs=76.7

Q ss_pred             CCCEEEEEEC---C---CcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeC---CCcEEEEc-CCceeEEEe--
Q 008510            2 PGVGIISASH---D---CTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSE---DRFAKIWK-DGVCVQSIE--   68 (563)
Q Consensus         2 ~g~~l~s~s~---D---gtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~---D~tvriWd-~~~~~~~l~--   68 (563)
                      ||.+||+.+-   +   ..+|||+-+|....+-+.-.+--.+++|.|.| .+++...   ...|.+|. +|-.-..|.  
T Consensus       220 DG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~  299 (928)
T PF04762_consen  220 DGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLR  299 (928)
T ss_pred             CCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecC
Confidence            7889998875   3   57999999887665554333444688999999 6776654   34577777 554444444  


Q ss_pred             ---cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeec
Q 008510           69 ---HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELE  110 (563)
Q Consensus        69 ---h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~  110 (563)
                         ....|..++|+++++ +|....| .|.+|......+.-..++.
T Consensus       300 ~~~~~~~v~~l~Wn~ds~iLAv~~~~-~vqLWt~~NYHWYLKqei~  344 (928)
T PF04762_consen  300 FDPEEEKVIELAWNSDSEILAVWLED-RVQLWTRSNYHWYLKQEIR  344 (928)
T ss_pred             CCCCCceeeEEEECCCCCEEEEEecC-CceEEEeeCCEEEEEEEEE
Confidence               234899999999999 5555544 5999999998876555554

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=96.32  E-value=0.84  Score=44.25  Aligned_cols=213  Identities=13%  Similarity=0.189  Sum_probs=107.2

Q ss_pred             CCCEEEEEECCCcEEEEcC-C--CceeEEEecCCC---cEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe--c--
Q 008510            2 PGVGIISASHDCTIRLWAL-T--GQVLMEMVGHTA---IVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE--H--   69 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~--g~~i~~l~gH~~---~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~--h--   69 (563)
                      +|+.+|. =.|..|-+-+. +  ..++.+..-+.+   .=.-++|+||+ .+|.+...|+|+++| .|..+..+.  +  
T Consensus         8 ~Gk~lAi-~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~   86 (282)
T PF15492_consen    8 DGKLLAI-LQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSF   86 (282)
T ss_pred             CCcEEEE-EeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCccccc
Confidence            3444443 34666666655 2  223333332222   23579999999 888888899999999 777777665  1  


Q ss_pred             ----CCcEEEEEEccCC-------cEEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCce--EEEeCCC
Q 008510           70 ----PGCVWDAKFLENG-------DIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGL--KLEDLPG  136 (563)
Q Consensus        70 ----~~~V~~v~~~p~g-------~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i--~~~d~~~  136 (563)
                          ...|..+.|.+.-       +++.-..+|.++=|-+..++...-.+...       +.+.......|  -+|+ ++
T Consensus        87 ~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hs-------fsf~~~yp~Gi~~~vy~-p~  158 (282)
T PF15492_consen   87 PGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHS-------FSFSSHYPHGINSAVYH-PK  158 (282)
T ss_pred             CCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEE-------EEecccCCCceeEEEEc-CC
Confidence                2356666676522       25666677777777654322000001111       11111100111  1122 33


Q ss_pred             CceeeecccCCCeEEEEecCCCeEEEEEecccce--EEEeCcE---eeCCC--CC------CCceeecCcccCcEEEEEc
Q 008510          137 LEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQK--WDKLGEV---VDGPD--DG------MNRPILDGIQYDYVFDVDI  203 (563)
Q Consensus       137 ~~~l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~--w~~~g~v---~~~~~--~~------~~~~~~~g~~~d~v~~vd~  203 (563)
                      ...+.+.|....+........-+ ...|..-.+.  +..+...   +....  .+      .+.....+.+.|+||.+.+
T Consensus       159 h~LLlVgG~~~~~~~~s~a~~~G-LtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSl  237 (282)
T PF15492_consen  159 HRLLLVGGCEQNQDGMSKASSCG-LTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSL  237 (282)
T ss_pred             CCEEEEeccCCCCCccccccccC-ceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEE
Confidence            34444444443332221111111 1123321111  1111100   00000  00      0111234566799999999


Q ss_pred             -CCCCeeeeecCCCCCChhHHH
Q 008510          204 -GDGEPTRKLPYNRSDNPYDAA  224 (563)
Q Consensus       204 -~dg~~~~~~~~n~~~~~w~~a  224 (563)
                       +||..++...+++.+-+|.+-
T Consensus       238 SPdg~~La~ih~sG~lsLW~iP  259 (282)
T PF15492_consen  238 SPDGSLLACIHFSGSLSLWEIP  259 (282)
T ss_pred             CCCCCEEEEEEcCCeEEEEecC
Confidence             999999999999999999874

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=96.31  E-value=0.053  Score=56.62  Aligned_cols=93  Identities=14%  Similarity=0.217  Sum_probs=53.7

Q ss_pred             EECCCcEEEEcCCCceeEEEecCCC----cEEEEEEcCCC--e--EEEEeCCC---------cEEEEc-CC-ceeEEEec
Q 008510            9 ASHDCTIRLWALTGQVLMEMVGHTA----IVYSIDSHASG--L--IVSGSEDR---------FAKIWK-DG-VCVQSIEH   69 (563)
Q Consensus         9 ~s~DgtIrlWd~~g~~i~~l~gH~~----~V~~v~~~p~g--~--l~s~s~D~---------tvriWd-~~-~~~~~l~h   69 (563)
                      .|.-+.||||...........+..+    .=..+.|++-|  .  +++.--|.         ++.+.+ +| .+.-.+..
T Consensus       190 kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k  269 (566)
T KOG2315|consen  190 KGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLK  269 (566)
T ss_pred             CCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCC
Confidence            3445668888773111111111111    11246788765  3  44444444         455555 32 33334446


Q ss_pred             CCcEEEEEEccCCc---EEEEeCCCcEEEEEcCCC
Q 008510           70 PGCVWDAKFLENGD---IVTACSDGVTRIWTVHSD  101 (563)
Q Consensus        70 ~~~V~~v~~~p~g~---i~sgs~Dg~Irvwd~~~~  101 (563)
                      .++|+++.|+|+|+   ++-|=.=..+-|||++-.
T Consensus       270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~  304 (566)
T KOG2315|consen  270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK  304 (566)
T ss_pred             CCCceEEEECCCCCEEEEEEecccceEEEEcCCCC
Confidence            78999999999997   455666678899998754

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.26  E-value=0.69  Score=51.15  Aligned_cols=95  Identities=17%  Similarity=0.199  Sum_probs=68.0

Q ss_pred             CCEEEEEECCCcEEEEcCCCceeEEEecCCCc-EEEEEEcCCC-eEEEEeCCCc-----EEEEc----C----CceeEEE
Q 008510            3 GVGIISASHDCTIRLWALTGQVLMEMVGHTAI-VYSIDSHASG-LIVSGSEDRF-----AKIWK----D----GVCVQSI   67 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~-V~~v~~~p~g-~l~s~s~D~t-----vriWd----~----~~~~~~l   67 (563)
                      +..++-|++||.|-+.+-.-+.++.++.|... |..+-...+. .+++-++|+.     ++||+    +    ..|+.+.
T Consensus        35 ~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~  114 (933)
T KOG2114|consen   35 TGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEH  114 (933)
T ss_pred             CceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeee
Confidence            46788899999887777666677888888776 4444333333 7899888864     99999    1    3455222


Q ss_pred             ---ec-----CCcEEEEEEccCCc-EEEEeCCCcEEEEE
Q 008510           68 ---EH-----PGCVWDAKFLENGD-IVTACSDGVTRIWT   97 (563)
Q Consensus        68 ---~h-----~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd   97 (563)
                         +|     +.++.+++++.+-. ||+|=.||.|..+.
T Consensus       115 ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~  153 (933)
T KOG2114|consen  115 RIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYK  153 (933)
T ss_pred             eeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEc
Confidence               22     34788999988866 89999999998875

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=96.23  E-value=0.036  Score=61.09  Aligned_cols=94  Identities=13%  Similarity=0.184  Sum_probs=49.7

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeC---------CCcEEEEc--CCceeEEEecC
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSE---------DRFAKIWK--DGVCVQSIEHP   70 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~---------D~tvriWd--~~~~~~~l~h~   70 (563)
                      ++.+.+|...|+|.+-|. +.+.++++..|++.|.++++..+ .++|||-         |..|+|||  .-+.+-.++.+
T Consensus       187 nr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GN-lLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~  265 (1118)
T KOG1275|consen  187 NRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQGN-LLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP  265 (1118)
T ss_pred             CcEEEeecccceEEeecCCcCceeeeeeccccceeeeeccCC-eEEEeecccccccccccchhhhhhhhhhhccCCcccc
Confidence            455666666666666666 56666666666666666554322 5566553         45566666  33333333311


Q ss_pred             CcEEEEEEccC--CcEEEEeCCCcEEEEE
Q 008510           71 GCVWDAKFLEN--GDIVTACSDGVTRIWT   97 (563)
Q Consensus        71 ~~V~~v~~~p~--g~i~sgs~Dg~Irvwd   97 (563)
                      ..-.-+.|+|.  .+++..+..|...+-|
T Consensus       266 ~~P~flrf~Psl~t~~~V~S~sGq~q~vd  294 (1118)
T KOG1275|consen  266 YGPQFLRFHPSLTTRLAVTSQSGQFQFVD  294 (1118)
T ss_pred             cCchhhhhcccccceEEEEecccceeecc
Confidence            11233445553  2255555555555555

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=96.22  E-value=0.12  Score=51.06  Aligned_cols=130  Identities=18%  Similarity=0.298  Sum_probs=90.5

Q ss_pred             CEEEEEECCCcEEEEcCC-----CceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc---CC-------------
Q 008510            4 VGIISASHDCTIRLWALT-----GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK---DG-------------   61 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~~-----g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd---~~-------------   61 (563)
                      ++|+.|-..|++.-+.+.     -...+.+..|.++|..+-|+-.. .+++++.|..+- |-   .+             
T Consensus        81 ~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e~~~~lg~Y~~~~~~t  159 (404)
T KOG1409|consen   81 RRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTESGNRLGGYNFETPAS  159 (404)
T ss_pred             eEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceE-EEeeccCCcccceEeeccCC
Confidence            467777788999888872     23566777899999998887665 788888876543 43   10             


Q ss_pred             ----------------------------ceeEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecc
Q 008510           62 ----------------------------VCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEA  111 (563)
Q Consensus        62 ----------------------------~~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~  111 (563)
                                                  ..+.++. |.+.+.+.+|.|... +.+|..|..|-+||+--.+.. ..++..
T Consensus       160 ~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~-~~el~g  238 (404)
T KOG1409|consen  160 ALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT-AYELQG  238 (404)
T ss_pred             CCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcce-eeeecc
Confidence                                        0122333 778899999998655 899999999999998765522 223344


Q ss_pred             ccccc--------ceeEEeeccCCceEEEeCC
Q 008510          112 YASEL--------SQYKLCRKKVGGLKLEDLP  135 (563)
Q Consensus       112 ~~~~v--------~~~~~~~~~~~~i~~~d~~  135 (563)
                      +.+.+        ....++.+.+|.|.+|++.
T Consensus       239 h~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  239 HNDKVQALSYAQHTRQLISCGEDGGIVVWNMN  270 (404)
T ss_pred             chhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence            44332        3556677888888888885

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=96.05  E-value=0.084  Score=55.17  Aligned_cols=131  Identities=15%  Similarity=0.173  Sum_probs=83.9

Q ss_pred             EEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEEEccCCc-EEEEeC-----------CCcEEEEEcC
Q 008510           35 VYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKFLENGD-IVTACS-----------DGVTRIWTVH   99 (563)
Q Consensus        35 V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~~~p~g~-i~sgs~-----------Dg~Irvwd~~   99 (563)
                      -+-+.|||.| +++|--.- -|.+|-  +...++.+.|+ .|.-+.|+|+.+ ++|-+.           ...++|||++
T Consensus       213 etyv~wSP~GTYL~t~Hk~-GI~lWGG~~f~r~~RF~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~  290 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQ-GIALWGGESFDRIQRFYHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA  290 (698)
T ss_pred             eeeEEecCCceEEEEEecc-ceeeecCccHHHHHhccCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence            3568999999 88876544 488998  66677778888 488899999987 776542           2579999999


Q ss_pred             CCceeceeeec--------ccccccceeEEeeccCCceEEEeCCCCceeeec-ccCCCeEEEEecCCCeEEEEEecc
Q 008510          100 SDKVADSLELE--------AYASELSQYKLCRKKVGGLKLEDLPGLEALQIP-GTNAGQTKVVREGDNGVAYSWDMK  167 (563)
Q Consensus       100 ~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~-g~~dg~~~l~~~~~~~~~~~wd~~  167 (563)
                      +|........-        -|.-+.+...++.-....|.+++.+....+... -..+|...+.+++...+...|...
T Consensus       291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe  367 (698)
T KOG2314|consen  291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPE  367 (698)
T ss_pred             ccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccc
Confidence            99854333321        111122222333334467888887765444332 445565556666665665666543

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=96.05  E-value=0.35  Score=49.43  Aligned_cols=95  Identities=11%  Similarity=0.179  Sum_probs=70.4

Q ss_pred             CcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC--eEEEEe---------CCCcEEEEc--CCceeEEEecCC-------
Q 008510           13 CTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG--LIVSGS---------EDRFAKIWK--DGVCVQSIEHPG-------   71 (563)
Q Consensus        13 gtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s---------~D~tvriWd--~~~~~~~l~h~~-------   71 (563)
                      ++|.+.|. +++.+.++..-..+- .+ ++|||  ..++.+         .+..|.+||  +.+.+..+..+.       
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            89999999 788888886433332 24 89998  455556         688999999  888888887433       


Q ss_pred             -cEEEEEEccCCc-EEEEe-C-CCcEEEEEcCCCceeceeee
Q 008510           72 -CVWDAKFLENGD-IVTAC-S-DGVTRIWTVHSDKVADSLEL  109 (563)
Q Consensus        72 -~V~~v~~~p~g~-i~sgs-~-Dg~Irvwd~~~~~~~~~~~~  109 (563)
                       .-+.++++|||+ +...- . +..|-+.|+.+++.......
T Consensus       105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v  146 (352)
T TIGR02658       105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV  146 (352)
T ss_pred             CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC
Confidence             344889999999 55443 3 79999999999986554443

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=96.05  E-value=2.1  Score=43.92  Aligned_cols=101  Identities=12%  Similarity=0.224  Sum_probs=64.8

Q ss_pred             CCCEEEEEEC----CCcEEEEcC--C-Cc--eeEEEecCCCcEEEEEEcCCC-eEE-EEeCCCcEEEEc---CCcee---
Q 008510            2 PGVGIISASH----DCTIRLWAL--T-GQ--VLMEMVGHTAIVYSIDSHASG-LIV-SGSEDRFAKIWK---DGVCV---   64 (563)
Q Consensus         2 ~g~~l~s~s~----DgtIrlWd~--~-g~--~i~~l~gH~~~V~~v~~~p~g-~l~-s~s~D~tvriWd---~~~~~---   64 (563)
                      ++++|.++..    ++.|..|++  + |+  .+.+.......-+.++++|++ .++ +.-.+++|.+++   ++...   
T Consensus        47 ~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~  126 (345)
T PF10282_consen   47 DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVV  126 (345)
T ss_dssp             TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEE
T ss_pred             CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceee
Confidence            4667777766    578999988  2 43  334443233445678999998 544 445689999999   34332   


Q ss_pred             EEEec-----------CCcEEEEEEccCCc-EEE-EeCCCcEEEEEcCCCc
Q 008510           65 QSIEH-----------PGCVWDAKFLENGD-IVT-ACSDGVTRIWTVHSDK  102 (563)
Q Consensus        65 ~~l~h-----------~~~V~~v~~~p~g~-i~s-gs~Dg~Irvwd~~~~~  102 (563)
                      +.+.|           ....+++.++|+|+ +++ .-....|++|+++...
T Consensus       127 ~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~  177 (345)
T PF10282_consen  127 QTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDT  177 (345)
T ss_dssp             EEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS
T ss_pred             eecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCC
Confidence            23322           13688999999998 443 3345689999997765

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=96.04  E-value=1.3  Score=46.36  Aligned_cols=208  Identities=13%  Similarity=0.125  Sum_probs=110.9

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEecCCcEEEE--E
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDA--K   77 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v--~   77 (563)
                      ++.++.++.+|.+.-+|. +|+.+.+..... .+.+--...++.++.+..|+.+.-+|  +|+.+...........+  .
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~  198 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGE  198 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCC
Confidence            556777888999999998 899888776433 23321111245666677889999999  88888777632211000  0


Q ss_pred             Ecc---CCcEEEEeCCCcEEEEEcCCCceeceeeecc------------cccc---cceeEEeeccCCceEEEeCCCCce
Q 008510           78 FLE---NGDIVTACSDGVTRIWTVHSDKVADSLELEA------------YASE---LSQYKLCRKKVGGLKLEDLPGLEA  139 (563)
Q Consensus        78 ~~p---~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~------------~~~~---v~~~~~~~~~~~~i~~~d~~~~~~  139 (563)
                      .+|   ++.++.++.+|.+..+|..+++..-...+..            ....   .....+....++.+...|..+++.
T Consensus       199 ~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~  278 (394)
T PRK11138        199 SAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQI  278 (394)
T ss_pred             CCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCE
Confidence            122   3457778889999999988886432211110            0000   123334444556666666655543


Q ss_pred             eeec--ccC-----CCeEEEEecCCCeEEEEEecccc--eEEEe---CcEeeCCCCCCCceeecCcccCcEEEEEcCCCC
Q 008510          140 LQIP--GTN-----AGQTKVVREGDNGVAYSWDMKEQ--KWDKL---GEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGE  207 (563)
Q Consensus       140 l~~~--g~~-----dg~~~l~~~~~~~~~~~wd~~~~--~w~~~---g~v~~~~~~~~~~~~~~g~~~d~v~~vd~~dg~  207 (563)
                      +=..  ++.     ++....+.+. ++.++..|..++  .|...   +.....+. -.+..+|.+...++++.++..+|+
T Consensus       279 ~W~~~~~~~~~~~~~~~~vy~~~~-~g~l~ald~~tG~~~W~~~~~~~~~~~sp~-v~~g~l~v~~~~G~l~~ld~~tG~  356 (394)
T PRK11138        279 VWKREYGSVNDFAVDGGRIYLVDQ-NDRVYALDTRGGVELWSQSDLLHRLLTAPV-LYNGYLVVGDSEGYLHWINREDGR  356 (394)
T ss_pred             EEeecCCCccCcEEECCEEEEEcC-CCeEEEEECCCCcEEEcccccCCCcccCCE-EECCEEEEEeCCCEEEEEECCCCC
Confidence            2111  111     1112222222 244555565544  35321   11111110 013445666666788888888887


Q ss_pred             eeeeec
Q 008510          208 PTRKLP  213 (563)
Q Consensus       208 ~~~~~~  213 (563)
                      .+.+..
T Consensus       357 ~~~~~~  362 (394)
T PRK11138        357 FVAQQK  362 (394)
T ss_pred             EEEEEE
Confidence            665543

>PRK04043 tolB translocation protein TolB; Provisional

Probab=96.01  E-value=0.73  Score=48.70  Aligned_cols=100  Identities=16%  Similarity=0.207  Sum_probs=61.0

Q ss_pred             CCCE-EEEEECC---CcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-e-EEEEeCCCc--EEEEc-CCceeEEEe-cC
Q 008510            2 PGVG-IISASHD---CTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-L-IVSGSEDRF--AKIWK-DGVCVQSIE-HP   70 (563)
Q Consensus         2 ~g~~-l~s~s~D---gtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~-l~s~s~D~t--vriWd-~~~~~~~l~-h~   70 (563)
                      ||+. ++..+.+   ..|.++|+ +|+. ..+....+.+...+|+||| . +++.+.++.  +.+++ .+...+.++ ++
T Consensus       198 DG~~~i~y~s~~~~~~~Iyv~dl~tg~~-~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~  276 (419)
T PRK04043        198 KEQTAFYYTSYGERKPTLYKYNLYTGKK-EKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYP  276 (419)
T ss_pred             CCCcEEEEEEccCCCCEEEEEECCCCcE-EEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCC
Confidence            4553 5544444   45777888 5544 3333455666778899999 4 445555554  55556 444455565 44


Q ss_pred             CcEEEEEEccCCc-EEEEeC-CC--cEEEEEcCCCc
Q 008510           71 GCVWDAKFLENGD-IVTACS-DG--VTRIWTVHSDK  102 (563)
Q Consensus        71 ~~V~~v~~~p~g~-i~sgs~-Dg--~Irvwd~~~~~  102 (563)
                      .....-.|+|||+ |+-.+. .+  .|.+.|+.+++
T Consensus       277 ~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~  312 (419)
T PRK04043        277 GIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS  312 (419)
T ss_pred             CccCccEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            4445568999998 654442 23  57778887776

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=95.96  E-value=0.013  Score=59.57  Aligned_cols=99  Identities=19%  Similarity=0.200  Sum_probs=71.0

Q ss_pred             CEEEEEECCCcEEEEcCCC----ceeEEEecCCCcEEEEEEcCCC-eEEEEeC-CCcEEEEc--CCceeEEEe---cCCc
Q 008510            4 VGIISASHDCTIRLWALTG----QVLMEMVGHTAIVYSIDSHASG-LIVSGSE-DRFAKIWK--DGVCVQSIE---HPGC   72 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~~g----~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~-D~tvriWd--~~~~~~~l~---h~~~   72 (563)
                      +++.++|.||.+|.|..++    +.++.+..|-+.|.+++.+-+| .+.|.+. |..+|++|  +...+.-+.   .|+.
T Consensus        21 ~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~  100 (558)
T KOG0882|consen   21 KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGF  100 (558)
T ss_pred             heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCc
Confidence            5789999999999999743    4566778899999999999999 8888788 99999999  444433333   5655


Q ss_pred             EEEEEEccCCc--EEE-EeCCCcEEEEEcCCCc
Q 008510           73 VWDAKFLENGD--IVT-ACSDGVTRIWTVHSDK  102 (563)
Q Consensus        73 V~~v~~~p~g~--i~s-gs~Dg~Irvwd~~~~~  102 (563)
                      +.++.-..+-.  |+. .-.++.|.|+|-+..-
T Consensus       101 a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~  133 (558)
T KOG0882|consen  101 AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDF  133 (558)
T ss_pred             eEEecCCCCeeeeEEeecccCCCcEEECCcCCc
Confidence            54442211211  333 3457889999987664

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=95.96  E-value=0.04  Score=53.49  Aligned_cols=74  Identities=14%  Similarity=0.200  Sum_probs=53.4

Q ss_pred             ecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc---CCceeEEEe---c-----CCcEEEEEEccCCc--EEEEeCCCcEEE
Q 008510           29 VGHTAIVYSIDSHASGLIVSGSEDRFAKIWK---DGVCVQSIE---H-----PGCVWDAKFLENGD--IVTACSDGVTRI   95 (563)
Q Consensus        29 ~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd---~~~~~~~l~---h-----~~~V~~v~~~p~g~--i~sgs~Dg~Irv   95 (563)
                      ..|...|.+++|+.|....-++.|-.|.+|+   ...+.....   |     ..-|.+..|+|...  +.-.++.|.|++
T Consensus       169 NaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl  248 (460)
T COG5170         169 NAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL  248 (460)
T ss_pred             ccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence            4678888999999887444456788999999   333333222   2     23588899999644  677788999999


Q ss_pred             EEcCCCc
Q 008510           96 WTVHSDK  102 (563)
Q Consensus        96 wd~~~~~  102 (563)
                      -|+|...
T Consensus       249 ~DlRq~a  255 (460)
T COG5170         249 NDLRQSA  255 (460)
T ss_pred             hhhhhhh
Confidence            9999654

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=95.93  E-value=0.67  Score=48.58  Aligned_cols=101  Identities=14%  Similarity=0.172  Sum_probs=68.6

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeEEEecCC--C--------cEE-EEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEe
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHT--A--------IVY-SIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIE   68 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~--~--------~V~-~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~   68 (563)
                      ++.++.++.+|.+.-+|. +|+.+.+..-..  .        .+. .+.+. ++.++.++.++.+..+|  +|+.+....
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~v~v~~~~g~l~ald~~tG~~~W~~~  147 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVA-GGKVYIGSEKGQVYALNAEDGEVAWQTK  147 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEE-CCEEEEEcCCCEEEEEECCCCCCccccc
Confidence            567777888899999998 898887754322  0        111 11221 34667788899999999  888887776


Q ss_pred             cCCcEEEEEEccCCcEEEEeCCCcEEEEEcCCCcee
Q 008510           69 HPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVA  104 (563)
Q Consensus        69 h~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~~~~~  104 (563)
                      .++.+.+--...++.++.++.++.+.-+|..+++..
T Consensus       148 ~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~  183 (394)
T PRK11138        148 VAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVK  183 (394)
T ss_pred             CCCceecCCEEECCEEEEECCCCEEEEEEccCCCEe
Confidence            444443321222556777888999999999998854

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=95.76  E-value=0.25  Score=51.25  Aligned_cols=88  Identities=14%  Similarity=0.034  Sum_probs=54.9

Q ss_pred             cEEEEcCCCceeEEEecCCCcEEEEEEcCCC-e--EEEEeCCCcEEEEc-CCceeEEEecCCcEEEEEEccCCc-EEEEe
Q 008510           14 TIRLWALTGQVLMEMVGHTAIVYSIDSHASG-L--IVSGSEDRFAKIWK-DGVCVQSIEHPGCVWDAKFLENGD-IVTAC   88 (563)
Q Consensus        14 tIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~--l~s~s~D~tvriWd-~~~~~~~l~h~~~V~~v~~~p~g~-i~sgs   88 (563)
                      ++.|++++++-+....+-.+.|.+.+|.|.+ .  +++|-.+-++.++| .++....+ .+..=..+-|+|.++ ++.++
T Consensus       256 nLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~-Pe~~rNT~~fsp~~r~il~ag  334 (561)
T COG5354         256 NLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYF-PEQKRNTIFFSPHERYILFAG  334 (561)
T ss_pred             eEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccceEEec-CCcccccccccCcccEEEEec
Confidence            4556666444444444557788888888876 3  44455777888888 66643333 333445567888887 66655


Q ss_pred             CC---CcEEEEEcCCCc
Q 008510           89 SD---GVTRIWTVHSDK  102 (563)
Q Consensus        89 ~D---g~Irvwd~~~~~  102 (563)
                      -|   |.|-+||.....
T Consensus       335 F~nl~gni~i~~~~~rf  351 (561)
T COG5354         335 FDNLQGNIEIFDPAGRF  351 (561)
T ss_pred             CCccccceEEeccCCce
Confidence            54   567777766543

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.61  E-value=0.049  Score=57.79  Aligned_cols=74  Identities=16%  Similarity=0.126  Sum_probs=64.4

Q ss_pred             CCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe-cCCcEE-EEEEccCCc-EEEEeCCCcEEEEEcCCCceec
Q 008510           32 TAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE-HPGCVW-DAKFLENGD-IVTACSDGVTRIWTVHSDKVAD  105 (563)
Q Consensus        32 ~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~-h~~~V~-~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~  105 (563)
                      ...|.-+.|+|.- .+|.+.++|.|-+.+ ..+.+.++. |...+. +++|.|||+ |+.|=.||+|++.|..++....
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            3557889999987 899999999999999 888889998 555677 999999999 8999999999999999887443

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=95.55  E-value=0.071  Score=56.37  Aligned_cols=56  Identities=23%  Similarity=0.243  Sum_probs=44.9

Q ss_pred             CCEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc
Q 008510            3 GVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK   59 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd   59 (563)
                      .+.++.|+.||+|++||...+.. ++..+.-....++|+|+| .++.|++-|.+.+||
T Consensus       271 E~kLvlGC~DgSiiLyD~~~~~t-~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD  327 (545)
T PF11768_consen  271 EDKLVLGCEDGSIILYDTTRGVT-LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFD  327 (545)
T ss_pred             cceEEEEecCCeEEEEEcCCCee-eeeeecccceEEEEcCCCcEEEEEcCCceEEEEE
Confidence            56899999999999999843322 233344456889999999 999999999999999

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=95.52  E-value=3.6  Score=48.04  Aligned_cols=54  Identities=7%  Similarity=-0.012  Sum_probs=39.4

Q ss_pred             CCEEEEEECCCcEEEE----cCCC---ceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc
Q 008510            3 GVGIISASHDCTIRLW----ALTG---QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK   59 (563)
Q Consensus         3 g~~l~s~s~DgtIrlW----d~~g---~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd   59 (563)
                      ...++.+..+|.|-+.    +...   +++..+   .+.|.+++|+||+ .++....++++.+.+
T Consensus        87 ~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v---d~GI~a~~WSPD~Ella~vT~~~~l~~mt  148 (928)
T PF04762_consen   87 SESLCIALASGDIILVREDPDPDEDEIEIVGSV---DSGILAASWSPDEELLALVTGEGNLLLMT  148 (928)
T ss_pred             CCcEEEEECCceEEEEEccCCCCCceeEEEEEE---cCcEEEEEECCCcCEEEEEeCCCEEEEEe
Confidence            4557778888999998    5522   334433   5679999999999 777777788887765

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=95.41  E-value=0.37  Score=53.51  Aligned_cols=99  Identities=11%  Similarity=0.114  Sum_probs=70.2

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA   76 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v   76 (563)
                      +++.++-|+.-..+-..|+ +++..+...-..+.|.=++.  ++ .+.+|..-|+|.+-|  +-+.++++. |.+.|..+
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf  223 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF  223 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence            3456677777777778888 45554544433434555543  34 788899999999999  788899998 99999987


Q ss_pred             EEccCCc-EEEEeC---------CCcEEEEEcCCCcee
Q 008510           77 KFLENGD-IVTACS---------DGVTRIWTVHSDKVA  104 (563)
Q Consensus        77 ~~~p~g~-i~sgs~---------Dg~Irvwd~~~~~~~  104 (563)
                      ...  |+ ++++|.         |.-|+|||+|.-+..
T Consensus       224 Dv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral  259 (1118)
T KOG1275|consen  224 DVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL  259 (1118)
T ss_pred             ecc--CCeEEEeecccccccccccchhhhhhhhhhhcc
Confidence            764  55 666654         455788888877743

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=95.24  E-value=3.1  Score=40.50  Aligned_cols=90  Identities=13%  Similarity=0.091  Sum_probs=59.1

Q ss_pred             CCCEEEEEECCCcEEEEcCCCceeEEEecCC-------CcEEEEEEcC-----C-C-eEEEEeCCCcEEEEc-------C
Q 008510            2 PGVGIISASHDCTIRLWALTGQVLMEMVGHT-------AIVYSIDSHA-----S-G-LIVSGSEDRFAKIWK-------D   60 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~-------~~V~~v~~~p-----~-g-~l~s~s~D~tvriWd-------~   60 (563)
                      |+..||.+...|+|+++|+.|..+..+..-.       ..|..+.|.+     + . .+..-.-+|.++-+-       .
T Consensus        54 D~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~  133 (282)
T PF15492_consen   54 DCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQG  133 (282)
T ss_pred             CCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCc
Confidence            5788999999999999999776655554322       3455666643     1 2 455556666665544       2


Q ss_pred             CceeEEEe----cCCcEEEEEEccCCc--EEEEeCCC
Q 008510           61 GVCVQSIE----HPGCVWDAKFLENGD--IVTACSDG   91 (563)
Q Consensus        61 ~~~~~~l~----h~~~V~~v~~~p~g~--i~sgs~Dg   91 (563)
                      .+..+++.    ++..|.++.++|..+  ++.|+...
T Consensus       134 y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~  170 (282)
T PF15492_consen  134 YQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN  170 (282)
T ss_pred             ceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC
Confidence            23344544    577999999999988  45555544

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=95.20  E-value=1.5  Score=43.61  Aligned_cols=157  Identities=15%  Similarity=0.146  Sum_probs=94.7

Q ss_pred             CCCEEEEEEC-----CCcEEEEcCC--CceeEEEecCCCcEEEEEEcCCC-eEEEE--eC-----CCcEEE---------
Q 008510            2 PGVGIISASH-----DCTIRLWALT--GQVLMEMVGHTAIVYSIDSHASG-LIVSG--SE-----DRFAKI---------   57 (563)
Q Consensus         2 ~g~~l~s~s~-----DgtIrlWd~~--g~~i~~l~gH~~~V~~v~~~p~g-~l~s~--s~-----D~tvri---------   57 (563)
                      ||++|++.=+     .|.|-|||..  -+.+.++..|.=.-..+.+.||| .|+.+  |-     .|..++         
T Consensus        61 dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL  140 (305)
T PF07433_consen   61 DGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSL  140 (305)
T ss_pred             CCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCce
Confidence            6788877655     4789999994  56788888777666788899998 55543  21     123333         


Q ss_pred             --Ec--CCceeEEEe-----cCCcEEEEEEccCCcEEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCc
Q 008510           58 --WK--DGVCVQSIE-----HPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGG  128 (563)
Q Consensus        58 --Wd--~~~~~~~l~-----h~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  128 (563)
                        -|  +|+.+....     |.-+++.+++.++|.++.|....      -......+             ....-..++.
T Consensus       141 ~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~q------g~~~~~~P-------------Lva~~~~g~~  201 (305)
T PF07433_consen  141 VYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQ------GDPGDAPP-------------LVALHRRGGA  201 (305)
T ss_pred             EEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecC------CCCCccCC-------------eEEEEcCCCc
Confidence              33  566665532     55689999999999977776431      11111000             0000111112


Q ss_pred             eEEEeCCCCc-------eeeecccCCCeEEEEecCCCeEEEEEecccceEEEeCcE
Q 008510          129 LKLEDLPGLE-------ALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEV  177 (563)
Q Consensus       129 i~~~d~~~~~-------~l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v  177 (563)
                      +.....+...       .-.+..+.+|....+.++.++.+.+||..++.|...-.+
T Consensus       202 ~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l  257 (305)
T PF07433_consen  202 LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL  257 (305)
T ss_pred             ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc
Confidence            2333332211       112235668888888888888999999999988765433

>PRK04043 tolB translocation protein TolB; Provisional

Probab=95.03  E-value=2.1  Score=45.22  Aligned_cols=88  Identities=10%  Similarity=0.005  Sum_probs=54.7

Q ss_pred             cEEEEcCCCceeEEEecCCCcEEEEEEcCCC-e-EEEEeCC---CcEEEEc--CCceeEEEecCCcEEEEEEccCCc-EE
Q 008510           14 TIRLWALTGQVLMEMVGHTAIVYSIDSHASG-L-IVSGSED---RFAKIWK--DGVCVQSIEHPGCVWDAKFLENGD-IV   85 (563)
Q Consensus        14 tIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~-l~s~s~D---~tvriWd--~~~~~~~l~h~~~V~~v~~~p~g~-i~   85 (563)
                      .|.+-|.+|...+.+.... .+..-.|+|+| . ++..+.+   ..|.++|  +++..+....++.+....|+|||+ ++
T Consensus       170 ~l~~~d~dg~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la  248 (419)
T PRK04043        170 NIVLADYTLTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLL  248 (419)
T ss_pred             eEEEECCCCCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEE
Confidence            4444455676555554443 77889999998 4 5544433   3477777  444333333566677888999998 54


Q ss_pred             -EEeCC--CcEEEEEcCCCc
Q 008510           86 -TACSD--GVTRIWTVHSDK  102 (563)
Q Consensus        86 -sgs~D--g~Irvwd~~~~~  102 (563)
                       +.+.+  ..|.++|+.++.
T Consensus       249 ~~~~~~g~~~Iy~~dl~~g~  268 (419)
T PRK04043        249 LTMAPKGQPDIYLYDTNTKT  268 (419)
T ss_pred             EEEccCCCcEEEEEECCCCc
Confidence             33333  457777776664

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=94.97  E-value=0.062  Score=58.75  Aligned_cols=88  Identities=16%  Similarity=0.290  Sum_probs=69.3

Q ss_pred             CCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe--cCCcEEEEEEccCCc-EEE
Q 008510           12 DCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE--HPGCVWDAKFLENGD-IVT   86 (563)
Q Consensus        12 DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~--h~~~V~~v~~~p~g~-i~s   86 (563)
                      .|+|.||--+|++-+... ..-.+.++||+|.. .++.|-+-|.+.+|. ..+..++..  |+..+.-+.|+++|. +++
T Consensus        40 ~GSVtIfadtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t  118 (1416)
T KOG3617|consen   40 GGSVTIFADTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMT  118 (1416)
T ss_pred             CceEEEEecCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEE
Confidence            577888766666543221 11225679999998 888999999999999 666667765  999999999999999 899


Q ss_pred             EeCCCcEEEEEcCC
Q 008510           87 ACSDGVTRIWTVHS  100 (563)
Q Consensus        87 gs~Dg~Irvwd~~~  100 (563)
                      +..=|.|.+|..+.
T Consensus       119 ~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen  119 LDNPGSVHLWRYDV  132 (1416)
T ss_pred             cCCCceeEEEEeee
Confidence            99999999998763

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=94.87  E-value=0.1  Score=56.14  Aligned_cols=99  Identities=16%  Similarity=0.175  Sum_probs=71.8

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCcee-EEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--C-C--ceeE--EEe--c
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVL-MEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--D-G--VCVQ--SIE--H   69 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i-~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~-~--~~~~--~l~--h   69 (563)
                      .+++++-|+.-|.+.+|+- .|+.. .+..|-.+.+...+++++. .+|.|+..|.|-++.  . .  ..++  ...  |
T Consensus        44 t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~  123 (726)
T KOG3621|consen   44 TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSH  123 (726)
T ss_pred             CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccC
Confidence            4688999999999999998 44432 2333444555666777777 677777777888777  2 1  1111  111  6


Q ss_pred             CCcEEEEEEccCCc-EEEEeCCCcEEEEEcCC
Q 008510           70 PGCVWDAKFLENGD-IVTACSDGVTRIWTVHS  100 (563)
Q Consensus        70 ~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~  100 (563)
                      +..|+|++|++||. +.+|.+-|+|..--+++
T Consensus       124 ~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  124 KCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             CceEEEEEecccccEEeecCCCceEEEEEech
Confidence            78999999999998 99999999998877776

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=94.84  E-value=0.17  Score=55.02  Aligned_cols=101  Identities=15%  Similarity=0.183  Sum_probs=76.9

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCC-----------C--eEEEEeCCCcEEEEc--CCceeE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHAS-----------G--LIVSGSEDRFAKIWK--DGVCVQ   65 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~-----------g--~l~s~s~D~tvriWd--~~~~~~   65 (563)
                      ++..||-||. ..|.+-|. +-+.+..+.-|...|..|.|.|.           .  .++++...|.|.+||  .+..+.
T Consensus        25 ~~GLiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~  103 (1062)
T KOG1912|consen   25 PSGLIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVIN  103 (1062)
T ss_pred             ccceEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhh
Confidence            3556777764 46788887 88999999999999999999762           1  466666779999999  556566


Q ss_pred             EEec-CCcEEEEEEcc---CCc--EEEEeCCCcEEEEEcCCCce
Q 008510           66 SIEH-PGCVWDAKFLE---NGD--IVTACSDGVTRIWTVHSDKV  103 (563)
Q Consensus        66 ~l~h-~~~V~~v~~~p---~g~--i~sgs~Dg~Irvwd~~~~~~  103 (563)
                      .+.| ..++..++|-+   +.+  ++.-..-+++.+|+..+|..
T Consensus       104 ~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k  147 (1062)
T KOG1912|consen  104 WLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK  147 (1062)
T ss_pred             hhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce
Confidence            6774 45899999987   343  55556678999999998873

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=94.68  E-value=0.28  Score=56.04  Aligned_cols=109  Identities=17%  Similarity=0.181  Sum_probs=69.8

Q ss_pred             CCCEEEEE----ECC-CcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEE---eCCCcEEEEc-CCceeEEEe---
Q 008510            2 PGVGIISA----SHD-CTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSG---SEDRFAKIWK-DGVCVQSIE---   68 (563)
Q Consensus         2 ~g~~l~s~----s~D-gtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~---s~D~tvriWd-~~~~~~~l~---   68 (563)
                      ||++|++.    ..| ..||+||-+|..-.+-....+-=.+++|-|.| .+++-   +.|..|.++. +|-.-..+.   
T Consensus       206 Dg~~fAVs~~~~~~~~RkirV~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~  285 (1265)
T KOG1920|consen  206 DGEYFAVSFVESETGTRKIRVYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPF  285 (1265)
T ss_pred             CCcEEEEEEEeccCCceeEEEecccchhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCC
Confidence            57777772    234 79999998765433322223333589999998 66664   3455788888 554333332   


Q ss_pred             -cCC-cEEEEEEccCCc-EEE--EeCCC-cEEEEEcCCCceeceeeec
Q 008510           69 -HPG-CVWDAKFLENGD-IVT--ACSDG-VTRIWTVHSDKVADSLELE  110 (563)
Q Consensus        69 -h~~-~V~~v~~~p~g~-i~s--gs~Dg-~Irvwd~~~~~~~~~~~~~  110 (563)
                       ... .|..++|+.+++ +++  .+..+ .|++|......+.....+.
T Consensus       286 p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~  333 (1265)
T KOG1920|consen  286 PLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQ  333 (1265)
T ss_pred             cccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEe
Confidence             222 499999999999 443  24444 4999999988766544443

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=94.52  E-value=4.9  Score=38.86  Aligned_cols=98  Identities=17%  Similarity=0.132  Sum_probs=62.3

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeEEEec-----CCCcEEEEEEcCCC-eEEEEeCC--------CcEEEEc-CCceeEE
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLMEMVG-----HTAIVYSIDSHASG-LIVSGSED--------RFAKIWK-DGVCVQS   66 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~g-----H~~~V~~v~~~p~g-~l~s~s~D--------~tvriWd-~~~~~~~   66 (563)
                      +..++.|..++ +.++|. +++.......     .....+++++.|+| ..++....        +.|..++ .++....
T Consensus        51 ~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~  129 (246)
T PF08450_consen   51 DGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVV  129 (246)
T ss_dssp             TSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEE
T ss_pred             CCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEE
Confidence            45666676655 566688 6644332222     33567899999999 66665544        3355555 5443333


Q ss_pred             EecCCcEEEEEEccCCc-E-EEEeCCCcEEEEEcCCC
Q 008510           67 IEHPGCVWDAKFLENGD-I-VTACSDGVTRIWTVHSD  101 (563)
Q Consensus        67 l~h~~~V~~v~~~p~g~-i-~sgs~Dg~Irvwd~~~~  101 (563)
                      ...-.....++|+|+|+ + ++-+..+.|..|++...
T Consensus       130 ~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~  166 (246)
T PF08450_consen  130 ADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDAD  166 (246)
T ss_dssp             EEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETT
T ss_pred             ecCcccccceEECCcchheeecccccceeEEEecccc
Confidence            33444678999999998 4 56677888999998643

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=94.40  E-value=6.2  Score=39.60  Aligned_cols=100  Identities=15%  Similarity=0.273  Sum_probs=62.9

Q ss_pred             CCEEEEEEC---CCcEEEEcC---CCce--eEEEecCCCcEEEEEEcCCC-eEEEEeC-CCcEEEEc---CCc---eeEE
Q 008510            3 GVGIISASH---DCTIRLWAL---TGQV--LMEMVGHTAIVYSIDSHASG-LIVSGSE-DRFAKIWK---DGV---CVQS   66 (563)
Q Consensus         3 g~~l~s~s~---DgtIrlWd~---~g~~--i~~l~gH~~~V~~v~~~p~g-~l~s~s~-D~tvriWd---~~~---~~~~   66 (563)
                      +++|.++-.   +|.|--|.+   +|+.  +.........-+.|+++++| .++++.- -+.|.++-   .|.   .++.
T Consensus        51 ~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~  130 (346)
T COG2706          51 QRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQV  130 (346)
T ss_pred             CCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceee
Confidence            445666544   467777766   2543  22211122233678999999 6555544 47888887   343   3455


Q ss_pred             EecCCc----------EEEEEEccCCc-EEEEeC-CCcEEEEEcCCCc
Q 008510           67 IEHPGC----------VWDAKFLENGD-IVTACS-DGVTRIWTVHSDK  102 (563)
Q Consensus        67 l~h~~~----------V~~v~~~p~g~-i~sgs~-Dg~Irvwd~~~~~  102 (563)
                      +.|.+.          +.+..+.|+|+ +++... -..|.+|++..++
T Consensus       131 ~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~  178 (346)
T COG2706         131 VKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGK  178 (346)
T ss_pred             eecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCc
Confidence            667766          99999999998 443322 3478999998776

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=94.32  E-value=0.12  Score=48.38  Aligned_cols=93  Identities=11%  Similarity=0.122  Sum_probs=53.6

Q ss_pred             CCEEEEEECCCcEEEEcCC--CceeEEEecCCCcEEEE-EEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEE
Q 008510            3 GVGIISASHDCTIRLWALT--GQVLMEMVGHTAIVYSI-DSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWD   75 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~~--g~~i~~l~gH~~~V~~v-~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~   75 (563)
                      +..++.|+.||.|.+|.+.  |.....+..-...|-+. ....++ ...+++.|+.+|-|+  -.+.+.... |..    
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~----  145 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF----  145 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccC----
Confidence            3568889999999999983  43322222222333332 222234 778899999999999  444443333 542    


Q ss_pred             EEEccCCcEEEEeCCCcEEEEEcCCCc
Q 008510           76 AKFLENGDIVTACSDGVTRIWTVHSDK  102 (563)
Q Consensus        76 v~~~p~g~i~sgs~Dg~Irvwd~~~~~  102 (563)
                         .|...+++.++|+.|.+|++...+
T Consensus       146 ---~~~e~~ivv~sd~~i~~a~~S~d~  169 (238)
T KOG2444|consen  146 ---ESGEELIVVGSDEFLKIADTSHDR  169 (238)
T ss_pred             ---CCcceeEEecCCceEEeeccccch
Confidence               222225555556666666665554

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=94.06  E-value=0.47  Score=53.38  Aligned_cols=96  Identities=10%  Similarity=0.102  Sum_probs=66.1

Q ss_pred             CCEEEEEECCCcEEEEcC--CCceeEEEec----CCCcEEEEEEcCCCeEEEEeCCCcEEEEc-CC-ceeEEEe-cCCcE
Q 008510            3 GVGIISASHDCTIRLWAL--TGQVLMEMVG----HTAIVYSIDSHASGLIVSGSEDRFAKIWK-DG-VCVQSIE-HPGCV   73 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~--~g~~i~~l~g----H~~~V~~v~~~p~g~l~s~s~D~tvriWd-~~-~~~~~l~-h~~~V   73 (563)
                      ...-+.|=++..+..||.  .|..+..-.+    ......|++-..+|.+|.||.+|-||++| .+ +....|. ...+|
T Consensus       542 ~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI  621 (794)
T PF08553_consen  542 NEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPI  621 (794)
T ss_pred             CCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCe
Confidence            334566778889999998  5533222122    22345788888888999999999999999 44 3333344 45699


Q ss_pred             EEEEEccCCcEEEEeCCCcEEEEEc
Q 008510           74 WDAKFLENGDIVTACSDGVTRIWTV   98 (563)
Q Consensus        74 ~~v~~~p~g~i~sgs~Dg~Irvwd~   98 (563)
                      ..|..+.||+.+.+.-+..+-+++.
T Consensus       622 ~~iDvt~DGkwilaTc~tyLlLi~t  646 (794)
T PF08553_consen  622 IGIDVTADGKWILATCKTYLLLIDT  646 (794)
T ss_pred             eEEEecCCCcEEEEeecceEEEEEE
Confidence            9999999999333333566777765

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=94.03  E-value=1.9  Score=44.99  Aligned_cols=93  Identities=8%  Similarity=0.106  Sum_probs=56.4

Q ss_pred             EECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eE-EEE--e--------CCCcEEEEc-CCceeEEE-ecCCcE
Q 008510            9 ASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LI-VSG--S--------EDRFAKIWK-DGVCVQSI-EHPGCV   73 (563)
Q Consensus         9 ~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l-~s~--s--------~D~tvriWd-~~~~~~~l-~h~~~V   73 (563)
                      .+.++++++|.+ .+..+.+-.-....=..+.|.+.| .+ +-.  .        ...++.|.+ ++..+... ...+.|
T Consensus       198 ~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pV  277 (561)
T COG5354         198 LNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPV  277 (561)
T ss_pred             CCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccc
Confidence            345777888887 444443321111112356677776 21 111  0        123456666 54444444 357799


Q ss_pred             EEEEEccCCc---EEEEeCCCcEEEEEcCCC
Q 008510           74 WDAKFLENGD---IVTACSDGVTRIWTVHSD  101 (563)
Q Consensus        74 ~~v~~~p~g~---i~sgs~Dg~Irvwd~~~~  101 (563)
                      ...+|.|.++   +++|-.+..+-+||++..
T Consensus       278 hdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N  308 (561)
T COG5354         278 HDFTWEPLSSRFAVISGYMPASVSVFDLRGN  308 (561)
T ss_pred             eeeeecccCCceeEEecccccceeecccccc
Confidence            9999999887   566678899999999876

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.67  E-value=0.21  Score=56.28  Aligned_cols=93  Identities=19%  Similarity=0.308  Sum_probs=65.6

Q ss_pred             CEEEEEECCCcEEEEcCCCcee--EEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCC---cEE
Q 008510            4 VGIISASHDCTIRLWALTGQVL--MEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPG---CVW   74 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~~g~~i--~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~---~V~   74 (563)
                      ..++.|+..|.|-..|++|..-  ..=..-+++|.+++|+.+| .+..|-.+|-|.+||  .++.++.+. |..   .|-
T Consensus       100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi  179 (1206)
T KOG2079|consen  100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVI  179 (1206)
T ss_pred             eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEE
Confidence            3577888888898888866422  1112235789999999999 888899999999999  668888887 433   444


Q ss_pred             EEEEccCCc-EEEEeCCCcEEEEEc
Q 008510           75 DAKFLENGD-IVTACSDGVTRIWTV   98 (563)
Q Consensus        75 ~v~~~p~g~-i~sgs~Dg~Irvwd~   98 (563)
                      .+.+..++. +.++...|.  +|.+
T Consensus       180 ~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  180 FVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             EEEEeCCCcEEEEccCCCc--eEEE
Confidence            444544444 777766675  5543

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=93.57  E-value=0.2  Score=53.36  Aligned_cols=76  Identities=16%  Similarity=0.059  Sum_probs=60.2

Q ss_pred             CEEEEEECCCcEEEEcCCCceeEEEecCCCcEE-EEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe--cCCcEEEEE
Q 008510            4 VGIISASHDCTIRLWALTGQVLMEMVGHTAIVY-SIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE--HPGCVWDAK   77 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~-~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~--h~~~V~~v~   77 (563)
                      +.||.+-.+|.|-+..++-+.+.++.-|...+. +++|.||| .++.|-.||+|++-|  .+..++...  ....|.++-
T Consensus        33 dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~  112 (665)
T KOG4640|consen   33 DLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGI  112 (665)
T ss_pred             chhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceeccccccccchheee
Confidence            357778888888888887777788877777777 99999999 899999999999999  677666632  444677777


Q ss_pred             Ec
Q 008510           78 FL   79 (563)
Q Consensus        78 ~~   79 (563)
                      |.
T Consensus       113 w~  114 (665)
T KOG4640|consen  113 WD  114 (665)
T ss_pred             cc
Confidence            75

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=93.49  E-value=1.5  Score=49.42  Aligned_cols=93  Identities=19%  Similarity=0.176  Sum_probs=67.1

Q ss_pred             EEEECCCcEEEEcC-CCceeEEEecCCCc-EEEEEEcC-----CC-eEEEEeCCCcEEEEc---CC-ceeEEE----ecC
Q 008510            7 ISASHDCTIRLWAL-TGQVLMEMVGHTAI-VYSIDSHA-----SG-LIVSGSEDRFAKIWK---DG-VCVQSI----EHP   70 (563)
Q Consensus         7 ~s~s~DgtIrlWd~-~g~~i~~l~gH~~~-V~~v~~~p-----~g-~l~s~s~D~tvriWd---~~-~~~~~l----~h~   70 (563)
                      ....+...|.-.|+ .|+.+.++.-|... |.+++-..     .. .-+.|-.+..+.-||   .+ ++++.-    ...
T Consensus       498 ~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~  577 (794)
T PF08553_consen  498 LDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSK  577 (794)
T ss_pred             ecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccC
Confidence            33345677888888 89999999988754 66654321     12 456677788899999   33 333321    234


Q ss_pred             CcEEEEEEccCCcEEEEeCCCcEEEEEcC
Q 008510           71 GCVWDAKFLENGDIVTACSDGVTRIWTVH   99 (563)
Q Consensus        71 ~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~   99 (563)
                      ....|++-..+|.||.|+.+|.||+||.-
T Consensus       578 ~~Fs~~aTt~~G~iavgs~~G~IRLyd~~  606 (794)
T PF08553_consen  578 NNFSCFATTEDGYIAVGSNKGDIRLYDRL  606 (794)
T ss_pred             CCceEEEecCCceEEEEeCCCcEEeeccc
Confidence            47899999999999999999999999943

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=93.16  E-value=0.27  Score=34.25  Aligned_cols=31  Identities=19%  Similarity=0.256  Sum_probs=26.0

Q ss_pred             cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcC
Q 008510           69 HPGCVWDAKFLENGD-IVTACSDGVTRIWTVH   99 (563)
Q Consensus        69 h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~   99 (563)
                      .+..|.+++|+|+.+ ||.|..||.|.+|.++
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            345788999999988 8899999999998883

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=92.79  E-value=0.098  Score=57.56  Aligned_cols=100  Identities=15%  Similarity=0.218  Sum_probs=75.5

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCC-cEEEEc---CCceeEEEecCCcEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDR-FAKIWK---DGVCVQSIEHPGCVW   74 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~-tvriWd---~~~~~~~l~h~~~V~   74 (563)
                      +.++++.|+..|.|+++++ +|.....+.+|.+.|+-+--+-+|  .+.+++..+ -.-+|+   .+...+++.   .-.
T Consensus      1112 ~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~---ed~ 1188 (1516)
T KOG1832|consen 1112 GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFD---EDK 1188 (1516)
T ss_pred             CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCcccccc---ccc
Confidence            3578999999999999999 899999999999999999888888  555555555 477999   344444443   556


Q ss_pred             EEEEccCCc-EEEEeCCCcEEEEEcCCCcee
Q 008510           75 DAKFLENGD-IVTACSDGVTRIWTVHSDKVA  104 (563)
Q Consensus        75 ~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~  104 (563)
                      +|.|+..-. -+.|+......+||+.++...
T Consensus      1189 ~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l 1219 (1516)
T KOG1832|consen 1189 AVKFSNSLQFRALGTEADDALLYDVQTCSPL 1219 (1516)
T ss_pred             eeehhhhHHHHHhcccccceEEEecccCcHH
Confidence            788876544 344555567899999988643

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=92.55  E-value=0.45  Score=48.77  Aligned_cols=73  Identities=18%  Similarity=0.287  Sum_probs=56.9

Q ss_pred             cCCCcEEEEEEcCCCeEEEEeCCCcEEEEc-CC-ceeEEEe----cCCcEEEEEEccCCc-EEEEeC-CCcEEEEEcCCC
Q 008510           30 GHTAIVYSIDSHASGLIVSGSEDRFAKIWK-DG-VCVQSIE----HPGCVWDAKFLENGD-IVTACS-DGVTRIWTVHSD  101 (563)
Q Consensus        30 gH~~~V~~v~~~p~g~l~s~s~D~tvriWd-~~-~~~~~l~----h~~~V~~v~~~p~g~-i~sgs~-Dg~Irvwd~~~~  101 (563)
                      -|.+.|+.|...-...+.+++-||.++.|- ++ .-+.-+.    |-+.|.+++.+.+|. +.|++. |..+|+||+.+-
T Consensus         7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen    7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            488888887665444899999999999999 54 3222222    666888899999998 788788 999999999875


Q ss_pred             c
Q 008510          102 K  102 (563)
Q Consensus       102 ~  102 (563)
                      .
T Consensus        87 D   87 (558)
T KOG0882|consen   87 D   87 (558)
T ss_pred             c
Confidence            4

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=92.45  E-value=8.2  Score=37.26  Aligned_cols=99  Identities=16%  Similarity=0.146  Sum_probs=61.5

Q ss_pred             CCCEEEEEECC--------CcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-e-EEEEeCCCcEEEEc---CCce---eE
Q 008510            2 PGVGIISASHD--------CTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-L-IVSGSEDRFAKIWK---DGVC---VQ   65 (563)
Q Consensus         2 ~g~~l~s~s~D--------gtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~-l~s~s~D~tvriWd---~~~~---~~   65 (563)
                      +|++.++....        |.|..++.+++... +...-.....++|+|++ . +++-+..+.|..++   .+..   .+
T Consensus        96 ~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~-~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~  174 (246)
T PF08450_consen   96 DGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTV-VADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRR  174 (246)
T ss_dssp             TS-EEEEEECCBCTTCGGSEEEEEEETTSEEEE-EEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEE
T ss_pred             CCCEEEEecCCCccccccccceEEECCCCeEEE-EecCcccccceEECCcchheeecccccceeEEEeccccccceeeee
Confidence            46666665544        33555555644433 33345667899999998 4 45667777777777   2331   12


Q ss_pred             EEe-cC---CcEEEEEEccCCcE-EEEeCCCcEEEEEcCCCc
Q 008510           66 SIE-HP---GCVWDAKFLENGDI-VTACSDGVTRIWTVHSDK  102 (563)
Q Consensus        66 ~l~-h~---~~V~~v~~~p~g~i-~sgs~Dg~Irvwd~~~~~  102 (563)
                      .+. .+   +..-.+++..+|+| ++.-..+.|.++|.+ ++
T Consensus       175 ~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~  215 (246)
T PF08450_consen  175 VFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GK  215 (246)
T ss_dssp             EEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SC
T ss_pred             eEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-cc
Confidence            232 11   24788999999995 454568899999988 65

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=91.85  E-value=15  Score=36.88  Aligned_cols=99  Identities=17%  Similarity=0.237  Sum_probs=67.2

Q ss_pred             CCCEEEEEEC-CCcEEEEcC--CCceeE--EEecCCCc----------EEEEEEcCCC-eEEEE--eCCCcEEEEc--CC
Q 008510            2 PGVGIISASH-DCTIRLWAL--TGQVLM--EMVGHTAI----------VYSIDSHASG-LIVSG--SEDRFAKIWK--DG   61 (563)
Q Consensus         2 ~g~~l~s~s~-DgtIrlWd~--~g~~i~--~l~gH~~~----------V~~v~~~p~g-~l~s~--s~D~tvriWd--~~   61 (563)
                      +|++++++.. -|.|.++-+  +|.+..  .+..|.+.          +.+..+.|++ +++++  |.| .|.+++  +|
T Consensus        99 ~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~~y~~~dg  177 (346)
T COG2706          99 DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RIFLYDLDDG  177 (346)
T ss_pred             CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eEEEEEcccC
Confidence            4667777665 578999988  454322  23346666          8899999999 66554  445 478888  44


Q ss_pred             ceeE----EEecCCcEEEEEEccCCcE--EEEeCCCcEEEEEcCCC
Q 008510           62 VCVQ----SIEHPGCVWDAKFLENGDI--VTACSDGVTRIWTVHSD  101 (563)
Q Consensus        62 ~~~~----~l~h~~~V~~v~~~p~g~i--~sgs~Dg~Irvwd~~~~  101 (563)
                      ....    .+.....-+.+.|+|+|++  +..=.+++|-+|..+..
T Consensus       178 ~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~  223 (346)
T COG2706         178 KLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA  223 (346)
T ss_pred             ccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence            3221    1123348899999999994  34556899999999874

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.78  E-value=1.5  Score=46.12  Aligned_cols=93  Identities=13%  Similarity=0.126  Sum_probs=64.3

Q ss_pred             EEEECCCcEEEEcC--CCc-eeEEEecCC----CcEEEEEEcCCCeEEEEeCCCcEEEEc-CCceeE-EEe-cCCcEEEE
Q 008510            7 ISASHDCTIRLWAL--TGQ-VLMEMVGHT----AIVYSIDSHASGLIVSGSEDRFAKIWK-DGVCVQ-SIE-HPGCVWDA   76 (563)
Q Consensus         7 ~s~s~DgtIrlWd~--~g~-~i~~l~gH~----~~V~~v~~~p~g~l~s~s~D~tvriWd-~~~~~~-~l~-h~~~V~~v   76 (563)
                      +.|=.|..|.-||.  .|. .+..-++|.    ....|.+-..+|.+|.||.+|-||+|| .+.... .+. ....|..|
T Consensus       398 lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hV  477 (644)
T KOG2395|consen  398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHV  477 (644)
T ss_pred             EEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeE
Confidence            34666888999998  555 444444554    224566666678999999999999999 444333 344 55689999


Q ss_pred             EEccCCcEEEEeCCCcEEEEEcC
Q 008510           77 KFLENGDIVTACSDGVTRIWTVH   99 (563)
Q Consensus        77 ~~~p~g~i~sgs~Dg~Irvwd~~   99 (563)
                      ..+.+|+.+.|.-+..+-+-|+.
T Consensus       478 dvtadGKwil~Tc~tyLlLi~t~  500 (644)
T KOG2395|consen  478 DVTADGKWILATCKTYLLLIDTL  500 (644)
T ss_pred             EeeccCcEEEEecccEEEEEEEe
Confidence            99999994444446666666653

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.68  E-value=14  Score=41.51  Aligned_cols=98  Identities=16%  Similarity=0.260  Sum_probs=67.5

Q ss_pred             CEEEEEECCCc-----EEEEcCC---C----cee--EEEecC-----CCcEEEEEEcCCC-eEEEEeCCCcEEEEc----
Q 008510            4 VGIISASHDCT-----IRLWALT---G----QVL--MEMVGH-----TAIVYSIDSHASG-LIVSGSEDRFAKIWK----   59 (563)
Q Consensus         4 ~~l~s~s~Dgt-----IrlWd~~---g----~~i--~~l~gH-----~~~V~~v~~~p~g-~l~s~s~D~tvriWd----   59 (563)
                      .+++|-+.|+.     +++|+++   +    .|+  ..+.+|     +.++.+++++.+- .+|.|=.||.|..+.    
T Consensus        78 ~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~  157 (933)
T KOG2114|consen   78 NFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDIL  157 (933)
T ss_pred             eEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcch
Confidence            46777777765     9999981   2    344  122332     4567888888776 788898999999887    


Q ss_pred             -CCceeEEEecCC--cEEEEEEccCCc-EEEEeCCCcEEEEEcCCCc
Q 008510           60 -DGVCVQSIEHPG--CVWDAKFLENGD-IVTACSDGVTRIWTVHSDK  102 (563)
Q Consensus        60 -~~~~~~~l~h~~--~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~  102 (563)
                       +....+.+.|++  +|+.+++..++. ++-...-..|.+|.+. ++
T Consensus       158 RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~-gr  203 (933)
T KOG2114|consen  158 RDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLS-GR  203 (933)
T ss_pred             hccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEec-CC
Confidence             222234444554  999999999887 4444556788899887 44

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=91.61  E-value=0.76  Score=49.74  Aligned_cols=72  Identities=19%  Similarity=0.293  Sum_probs=58.2

Q ss_pred             CcEEEEEEcCCC-eEEEEeCCCcEEEEc--C----Cc-----------eeEEEe-cCCcEEEEEEccCCc-EEEEeCCCc
Q 008510           33 AIVYSIDSHASG-LIVSGSEDRFAKIWK--D----GV-----------CVQSIE-HPGCVWDAKFLENGD-IVTACSDGV   92 (563)
Q Consensus        33 ~~V~~v~~~p~g-~l~s~s~D~tvriWd--~----~~-----------~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~   92 (563)
                      ....|+.|+.+. +++.||.||.++|-.  +    ++           .-|++. |.++|.-+.|+.+.. +-+...+|.
T Consensus        15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl   94 (1189)
T KOG2041|consen   15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL   94 (1189)
T ss_pred             ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence            346799999875 999999999999986  1    11           125566 999999999998776 888888999


Q ss_pred             EEEEEcCCCcee
Q 008510           93 TRIWTVHSDKVA  104 (563)
Q Consensus        93 Irvwd~~~~~~~  104 (563)
                      |-||-+-.+.+.
T Consensus        95 IiVWmlykgsW~  106 (1189)
T KOG2041|consen   95 IIVWMLYKGSWC  106 (1189)
T ss_pred             EEEEeeecccHH
Confidence            999999888743

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=91.44  E-value=0.5  Score=32.92  Aligned_cols=33  Identities=18%  Similarity=0.205  Sum_probs=28.5

Q ss_pred             CCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCcee
Q 008510           32 TAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCV   64 (563)
Q Consensus        32 ~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~   64 (563)
                      ...|.+++|+|.. .+|.+..||.|.+++ +++.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qri   45 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQRI   45 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECCCcCc
Confidence            3569999999998 999999999999999 66643

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=91.22  E-value=2.5  Score=46.46  Aligned_cols=89  Identities=15%  Similarity=0.271  Sum_probs=62.2

Q ss_pred             ECCCcEEEEcC-CCceeEEEe-cCCCcEEEEEEc--CCC-eEEEEeCCCcEEEEc-----------CCceeEEEe---cC
Q 008510           10 SHDCTIRLWAL-TGQVLMEMV-GHTAIVYSIDSH--ASG-LIVSGSEDRFAKIWK-----------DGVCVQSIE---HP   70 (563)
Q Consensus        10 s~DgtIrlWd~-~g~~i~~l~-gH~~~V~~v~~~--p~g-~l~s~s~D~tvriWd-----------~~~~~~~l~---h~   70 (563)
                      +...++.|||. .+....+-. ...+.|.+++|.  |+| .+.+.|-.+.|.++.           ....++.+.   |+
T Consensus        48 ~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T  127 (631)
T PF12234_consen   48 SSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHT  127 (631)
T ss_pred             CCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCC
Confidence            33456899999 454332211 346889999985  567 788889999999996           113445443   44


Q ss_pred             -CcEEEEEEccCCcEEEEeCCCcEEEEEcC
Q 008510           71 -GCVWDAKFLENGDIVTACSDGVTRIWTVH   99 (563)
Q Consensus        71 -~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~   99 (563)
                       .+|.+..|.++|.++.|+ ++.+.|+|--
T Consensus       128 ~h~Igds~Wl~~G~LvV~s-GNqlfv~dk~  156 (631)
T PF12234_consen  128 PHPIGDSIWLKDGTLVVGS-GNQLFVFDKW  156 (631)
T ss_pred             CCCccceeEecCCeEEEEe-CCEEEEECCC
Confidence             589999999999976665 5678888754

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.68  E-value=1.6  Score=46.02  Aligned_cols=108  Identities=13%  Similarity=0.141  Sum_probs=71.1

Q ss_pred             EEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC---eE-----EEEeCCCcEEEEc---CCc-eeEEEe----
Q 008510            6 IISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG---LI-----VSGSEDRFAKIWK---DGV-CVQSIE----   68 (563)
Q Consensus         6 l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g---~l-----~s~s~D~tvriWd---~~~-~~~~l~----   68 (563)
                      +.++.+-..++--|+ .|+.+.+.+-|.. |.-+.+.|++   ++     +.|-.|..|.=||   .+. .+..-+    
T Consensus       349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy  427 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY  427 (644)
T ss_pred             eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence            344444455666677 7999999988877 7777777764   33     2355677888899   343 221111    


Q ss_pred             -cCCcEEEEEEccCCcEEEEeCCCcEEEEEcCCCceeceeeeccccccc
Q 008510           69 -HPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASEL  116 (563)
Q Consensus        69 -h~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v  116 (563)
                       ......|.+-..+|.||.||.+|.||+||. .++.+. ..++++...+
T Consensus       428 ~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AK-TAlPgLG~~I  474 (644)
T KOG2395|consen  428 STKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAK-TALPGLGDAI  474 (644)
T ss_pred             ccccccceeeecCCceEEEeecCCcEEeehh-hhhhhh-hcccccCCce
Confidence             234688888888999999999999999998 444332 2334444433

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=90.52  E-value=1.3  Score=48.51  Aligned_cols=94  Identities=12%  Similarity=0.027  Sum_probs=72.2

Q ss_pred             EEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCC---C--eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEE
Q 008510            5 GIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHAS---G--LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWD   75 (563)
Q Consensus         5 ~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~---g--~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~   75 (563)
                      ++|++.-.|.|-+||. .+..+..+..|...+..++|.+.   +  .++.-..-.++-+|+  +|+.+.... ......|
T Consensus        81 liAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~  160 (1062)
T KOG1912|consen   81 LIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSC  160 (1062)
T ss_pred             eEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceee
Confidence            5788888899999999 78788888889999999999763   3  466666678999998  788776666 3346777


Q ss_pred             EEEcc-CCc-EEEEeCCCcEEEEEc
Q 008510           76 AKFLE-NGD-IVTACSDGVTRIWTV   98 (563)
Q Consensus        76 v~~~p-~g~-i~sgs~Dg~Irvwd~   98 (563)
                      +.+.| +.+ +..-++.|.+.+-+.
T Consensus       161 f~~DPfd~rh~~~l~s~g~vl~~~~  185 (1062)
T KOG1912|consen  161 FRVDPFDSRHFCVLGSKGFVLSCKD  185 (1062)
T ss_pred             eeeCCCCcceEEEEccCceEEEEec
Confidence            88888 444 666666777766664

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=90.34  E-value=0.33  Score=53.66  Aligned_cols=120  Identities=18%  Similarity=0.184  Sum_probs=82.1

Q ss_pred             CceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEEEccCCc-EEEEeC-CC-cEE
Q 008510           22 GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGD-IVTACS-DG-VTR   94 (563)
Q Consensus        22 g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~~~p~g~-i~sgs~-Dg-~Ir   94 (563)
                      .+.++++..|+...+|++|+-+. .++.|+-.|.|++++  +|....... |...|+.|.-+.+|. .++.+. .. -.-
T Consensus      1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred             cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence            35667888999999999999876 899999999999999  777776666 999999999999998 444433 33 467


Q ss_pred             EEEcCCC-ceece---eeecccccccceeEEeeccCCceEEEeCCCCceeee
Q 008510           95 IWTVHSD-KVADS---LELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQI  142 (563)
Q Consensus        95 vwd~~~~-~~~~~---~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~  142 (563)
                      +|+..+- ...+.   ...-.|.+..... +.+.......++|+.+...+..
T Consensus      1171 LW~~~s~~~~~Hsf~ed~~vkFsn~~q~r-~~gt~~d~a~~YDvqT~~~l~t 1221 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFDEDKAVKFSNSLQFR-ALGTEADDALLYDVQTCSPLQT 1221 (1516)
T ss_pred             HhccccccCccccccccceeehhhhHHHH-HhcccccceEEEecccCcHHHH
Confidence            8988652 11111   1111233332222 2233335788999988877655

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=90.12  E-value=1.2  Score=37.23  Aligned_cols=98  Identities=15%  Similarity=0.013  Sum_probs=63.0

Q ss_pred             cchHHHHHHHHHhhcCC-CccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHH
Q 008510          419 PANLLTGIRAVTNLFKN-SSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALE  497 (563)
Q Consensus       419 ~~~~ll~lR~l~N~f~~-~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~~  497 (563)
                      +..+--+++++.|+... +.....+..  ..+++.+...+...+..++..++.++.|++.........-....++..+++
T Consensus        21 ~~~~~~a~~~l~~l~~~~~~~~~~~~~--~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~   98 (120)
T cd00020          21 ENVQREAAWALSNLSAGNNDNIQAVVE--AGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVN   98 (120)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHH--CCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHH
Confidence            56678899999999988 455554443  244555555555568899999999999997542111111111224566667


Q ss_pred             hhhhcccChhHHHHHHHHHhhhh
Q 008510          498 IAEEESIEVDSKYRALVAIGTLM  520 (563)
Q Consensus       498 ~l~~~~~~~Ea~~R~l~AlG~l~  520 (563)
                      .+.  ..+.+.....+.+|++|.
T Consensus        99 ~l~--~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          99 LLD--SSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHh--cCCHHHHHHHHHHHHHhh
Confidence            774  346777777888887764

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=89.45  E-value=2.9  Score=40.77  Aligned_cols=110  Identities=19%  Similarity=0.215  Sum_probs=72.0

Q ss_pred             HHHHHhhcCCCCCcchHHHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCc
Q 008510          406 MEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDE  485 (563)
Q Consensus       406 ~~~l~~~~~~~~~~~~~ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~  485 (563)
                      ..++....+.+.....++-+||+|+||-.......++....+.++.    .+.+.+..+|.=+--++.|+|.--...++-
T Consensus        96 ~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~----LL~~G~~~~k~~vLk~L~nLS~np~~~~~L  171 (254)
T PF04826_consen   96 PQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLS----LLSSGSEKTKVQVLKVLVNLSENPDMTREL  171 (254)
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHH----HHHcCChHHHHHHHHHHHHhccCHHHHHHH
Confidence            3333333333334467899999999998777777777665555544    444567788888888999998643322110


Q ss_pred             hhhhHHHHHHHHhhhhcccChhHHHHHHHHHhhhhc
Q 008510          486 EGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLML  521 (563)
Q Consensus       486 ~~~~~l~~~~~~~l~~~~~~~Ea~~R~l~AlG~l~~  521 (563)
                       -..+.++.++..+. ...+.|.+.|+|.-+.++-.
T Consensus       172 -l~~q~~~~~~~Lf~-~~~~~~~l~~~l~~~~ni~~  205 (254)
T PF04826_consen  172 -LSAQVLSSFLSLFN-SSESKENLLRVLTFFENINE  205 (254)
T ss_pred             -HhccchhHHHHHHc-cCCccHHHHHHHHHHHHHHH
Confidence             11234455555554 44677999999999999965

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=89.00  E-value=29  Score=37.54  Aligned_cols=102  Identities=14%  Similarity=0.096  Sum_probs=64.2

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeEEEecCCC------cE--EEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEecCC
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTA------IV--YSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEHPG   71 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~------~V--~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~h~~   71 (563)
                      +..+..++.|+.|.-.|. +|+.+.++.-...      .+  ..+.+..++.++.++.|+.|.-+|  +|+.+.......
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~  140 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGNND  140 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence            456777888899999998 8988877654332      11  112222225677788899999999  888887776322


Q ss_pred             cE---EEEEEcc---CCcEEEEe---------CCCcEEEEEcCCCcee
Q 008510           72 CV---WDAKFLE---NGDIVTAC---------SDGVTRIWTVHSDKVA  104 (563)
Q Consensus        72 ~V---~~v~~~p---~g~i~sgs---------~Dg~Irvwd~~~~~~~  104 (563)
                      .+   ..+.-+|   ++.++.++         .+|.+.-+|..+++..
T Consensus       141 ~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~  188 (488)
T cd00216         141 QVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLL  188 (488)
T ss_pred             CcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence            21   1122222   34455554         3678899999988743

The alignment model contains an 8-bladed beta-propeller.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=88.95  E-value=36  Score=38.87  Aligned_cols=101  Identities=13%  Similarity=0.103  Sum_probs=66.1

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeEEEecCCCc--------EEEEEEcC----------------CC-eEEEEeCCCcEE
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAI--------VYSIDSHA----------------SG-LIVSGSEDRFAK   56 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~--------V~~v~~~p----------------~g-~l~s~s~D~tvr   56 (563)
                      |+.+..|+.++.|.-.|. +|+.+.++.-+...        ...+++..                ++ +++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            567778888998888898 89988877533211        11222211                22 677788899988


Q ss_pred             EEc--CCceeEEEecCCcEE-------------EEEEcc---CCcEEEEeC----------CCcEEEEEcCCCce
Q 008510           57 IWK--DGVCVQSIEHPGCVW-------------DAKFLE---NGDIVTACS----------DGVTRIWTVHSDKV  103 (563)
Q Consensus        57 iWd--~~~~~~~l~h~~~V~-------------~v~~~p---~g~i~sgs~----------Dg~Irvwd~~~~~~  103 (563)
                      -.|  +|+....+...+.|.             .+.-.|   ++.++.|+.          +|.|+-||.++|+.
T Consensus       274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl  348 (764)
T TIGR03074       274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGAL  348 (764)
T ss_pred             EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcE
Confidence            888  888887765443331             122223   445666653          68899999999983

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=88.38  E-value=13  Score=39.63  Aligned_cols=66  Identities=18%  Similarity=0.115  Sum_probs=25.7

Q ss_pred             EEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEEEccCCcEEEEeCCCcEEEEEcCCCceec
Q 008510           37 SIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVAD  105 (563)
Q Consensus        37 ~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~  105 (563)
                      +.+|.+.+.++.-...++|+|+.  ..+....+..+..+..+-.   |.++....++.|.+||+.+++...
T Consensus        73 ~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~  140 (443)
T PF04053_consen   73 SFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKLPFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIR  140 (443)
T ss_dssp             EEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEE
T ss_pred             EEEEecCccEEEEECCCeEEEEEcCccccceEEcCCcccceEEc---CcEEEEECCCCEEEEEhhHcceee
Confidence            44555555555555566677654  2222233433323333322   553323333467777777666443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.22  E-value=16  Score=35.75  Aligned_cols=88  Identities=15%  Similarity=0.153  Sum_probs=57.7

Q ss_pred             CCCEEEEEECC-----CcEEEEcC--CCceeEEEecCCCcEEEEEEcCCC-eEEEEeC------C-C-----------cE
Q 008510            2 PGVGIISASHD-----CTIRLWAL--TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSE------D-R-----------FA   55 (563)
Q Consensus         2 ~g~~l~s~s~D-----gtIrlWd~--~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~------D-~-----------tv   55 (563)
                      ||++|...-||     |.|-|||.  ..+.+.++.+|.-.-..+.+.+|| .++.+..      | |           ++
T Consensus       124 dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSl  203 (366)
T COG3490         124 DGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSL  203 (366)
T ss_pred             CCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccE
Confidence            56666666554     78999998  346778888888777899999999 4443321      1 1           12


Q ss_pred             EEEc--CCceeEEEe-----cCCcEEEEEEccCCcEEEEeC
Q 008510           56 KIWK--DGVCVQSIE-----HPGCVWDAKFLENGDIVTACS   89 (563)
Q Consensus        56 riWd--~~~~~~~l~-----h~~~V~~v~~~p~g~i~sgs~   89 (563)
                      -+-|  +|+.++...     +.-+|..++..+||++..||.
T Consensus       204 vlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQ  244 (366)
T COG3490         204 VLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQ  244 (366)
T ss_pred             EEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEE
Confidence            2223  444444333     334788898888888877764

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=88.00  E-value=4.7  Score=40.85  Aligned_cols=94  Identities=16%  Similarity=0.266  Sum_probs=56.2

Q ss_pred             EEEEEECCCcEEEEcC-CCc-eeEEEe-cCCCcEEEEEEcCCCeEEEEeCCCcEEEEc---CCceeEEEe---cCCcEEE
Q 008510            5 GIISASHDCTIRLWAL-TGQ-VLMEMV-GHTAIVYSIDSHASGLIVSGSEDRFAKIWK---DGVCVQSIE---HPGCVWD   75 (563)
Q Consensus         5 ~l~s~s~DgtIrlWd~-~g~-~i~~l~-gH~~~V~~v~~~p~g~l~s~s~D~tvriWd---~~~~~~~l~---h~~~V~~   75 (563)
                      +++.|. ++.|.+|++ ..+ ....-. .....+.++....+ .++.|...+.+.++.   ....+..+.   .+..+.+
T Consensus       100 ~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~-~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~  177 (321)
T PF03178_consen  100 RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKN-YILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTA  177 (321)
T ss_dssp             EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETT-EEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEE
T ss_pred             EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecccc-EEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEE
Confidence            344444 467888888 333 332221 12236666666533 777777777777764   344344443   3447788


Q ss_pred             EEEccCCc-EEEEeCCCcEEEEEcCC
Q 008510           76 AKFLENGD-IVTACSDGVTRIWTVHS  100 (563)
Q Consensus        76 v~~~p~g~-i~sgs~Dg~Irvwd~~~  100 (563)
                      +.+.++++ ++.+..+|.+.++....
T Consensus       178 ~~~l~d~~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  178 AEFLVDEDTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             EEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred             EEEecCCcEEEEEcCCCeEEEEEECC
Confidence            88886666 88888888888888764

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=87.59  E-value=14  Score=39.28  Aligned_cols=95  Identities=19%  Similarity=0.300  Sum_probs=62.5

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeC-----------CCcEEEEc--CCceeEEE
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSE-----------DRFAKIWK--DGVCVQSI   67 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~-----------D~tvriWd--~~~~~~~l   67 (563)
                      |.+++|-..-| |.+|-- +-..++.+. |.+ |.-+.|||.. +|+|=|.           ...++|||  +|...+++
T Consensus       222 GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF  298 (698)
T KOG2314|consen  222 GTYLVTFHKQG-IALWGGESFDRIQRFY-HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSF  298 (698)
T ss_pred             ceEEEEEeccc-eeeecCccHHHHHhcc-CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcce
Confidence            55666665555 567765 434444442 544 6788999987 8888442           25799999  88888887


Q ss_pred             ec---CCcEE-EEEEccCCcEEEEeCCCcEEEEEcCC
Q 008510           68 EH---PGCVW-DAKFLENGDIVTACSDGVTRIWTVHS  100 (563)
Q Consensus        68 ~h---~~~V~-~v~~~p~g~i~sgs~Dg~Irvwd~~~  100 (563)
                      ..   +-.+| -+.|+.|+...+.-....|.||+..+
T Consensus       299 ~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtps  335 (698)
T KOG2314|consen  299 PVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPS  335 (698)
T ss_pred             eccCCCccccceEEeccCCceeEEeccceEEEEecCc
Confidence            72   23555 35788898844333446788888765

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=87.44  E-value=41  Score=35.40  Aligned_cols=50  Identities=12%  Similarity=0.238  Sum_probs=42.0

Q ss_pred             cEEEEcCCCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc-CCce
Q 008510           14 TIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK-DGVC   63 (563)
Q Consensus        14 tIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd-~~~~   63 (563)
                      .|++|+..|+.+.++.=-.+.|.++.|+.+..++.-..||+++++| .|+.
T Consensus        62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~  112 (410)
T PF04841_consen   62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF  112 (410)
T ss_pred             EEEEECCCCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce
Confidence            5999999999888865444889999998876778888999999999 6666

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=86.55  E-value=16  Score=38.72  Aligned_cols=82  Identities=11%  Similarity=0.116  Sum_probs=47.7

Q ss_pred             CCceeEEEecCCCcEEEEEEcCCC-eEE--EEeCC--CcEEEEc--CCceeEEEecCCcEEEEEEccCCc--EEEEeCCC
Q 008510           21 TGQVLMEMVGHTAIVYSIDSHASG-LIV--SGSED--RFAKIWK--DGVCVQSIEHPGCVWDAKFLENGD--IVTACSDG   91 (563)
Q Consensus        21 ~g~~i~~l~gH~~~V~~v~~~p~g-~l~--s~s~D--~tvriWd--~~~~~~~l~h~~~V~~v~~~p~g~--i~sgs~Dg   91 (563)
                      +|.....+..-...+..-+|+|++ .++  +=-..  ..+.+++  .++.......++.-..-+|+|||+  +.+...||
T Consensus       181 dg~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg  260 (425)
T COG0823         181 DGYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDG  260 (425)
T ss_pred             CCcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCC
Confidence            455555555445667777888887 322  22222  2477777  444444444455555667899998  45666677


Q ss_pred             cE--EEEEcCCCc
Q 008510           92 VT--RIWTVHSDK  102 (563)
Q Consensus        92 ~I--rvwd~~~~~  102 (563)
                      ..  .++|+..+.
T Consensus       261 ~~~iy~~dl~~~~  273 (425)
T COG0823         261 SPDIYLMDLDGKN  273 (425)
T ss_pred             CccEEEEcCCCCc
Confidence            64  444555544

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=85.99  E-value=36  Score=33.27  Aligned_cols=102  Identities=15%  Similarity=0.094  Sum_probs=65.7

Q ss_pred             CCCEEEEEECCC--cEEEEcC-CCceeEEEecC-CCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEecCCcEEE
Q 008510            2 PGVGIISASHDC--TIRLWAL-TGQVLMEMVGH-TAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWD   75 (563)
Q Consensus         2 ~g~~l~s~s~Dg--tIrlWd~-~g~~i~~l~gH-~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~   75 (563)
                      +|..+-|+|.-|  .||.+|+ +|+......-. .-+=-.++...+....-.=.++...+||  +-+.+.++..++.=|.
T Consensus        55 ~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EGWG  134 (264)
T PF05096_consen   55 DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEGWG  134 (264)
T ss_dssp             TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE-SSS--E
T ss_pred             CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEEecCCcceE
Confidence            356677777766  6899999 78876655432 3344566666554444456778899999  7788888887788888


Q ss_pred             EEEccCCc-EEEEeCCCcEEEEEcCCCceec
Q 008510           76 AKFLENGD-IVTACSDGVTRIWTVHSDKVAD  105 (563)
Q Consensus        76 v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~  105 (563)
                      ++  .+|+ ++.......++++|..+.+...
T Consensus       135 Lt--~dg~~Li~SDGS~~L~~~dP~~f~~~~  163 (264)
T PF05096_consen  135 LT--SDGKRLIMSDGSSRLYFLDPETFKEVR  163 (264)
T ss_dssp             EE--ECSSCEEEE-SSSEEEEE-TTT-SEEE
T ss_pred             EE--cCCCEEEEECCccceEEECCcccceEE
Confidence            88  3555 6666556788999988766443

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=85.87  E-value=6.6  Score=32.54  Aligned_cols=99  Identities=21%  Similarity=0.088  Sum_probs=56.2

Q ss_pred             HhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHHhhhhcccChhHHHHHHHHHhhhhchh-HHHHHhh
Q 008510          452 AFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLMLEG-LVKKIAL  530 (563)
Q Consensus       452 ~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~Ea~~R~l~AlG~l~~~~-~~~~~~~  530 (563)
                      .+...+...+..+|..+...+-|++.........-.....+..+.+.+.  ..+++.....+.+|++|...+ .......
T Consensus        11 ~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~   88 (120)
T cd00020          11 ALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK--SEDEEVVKAALWALRNLAAGPEDNKLIVL   88 (120)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHh--CCCHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence            3334444556788888888899988652111111111234555666664  357899999999999999833 3444333


Q ss_pred             hcChHHHH-HHHhhcCChhHHHHH
Q 008510          531 DFDVGNIA-RVAKASKETKIAEVG  553 (563)
Q Consensus       531 ~~~~~~~~-~~~~~~~~~~i~~~~  553 (563)
                      ..++-..+ +-+. ..+.++.+.+
T Consensus        89 ~~g~l~~l~~~l~-~~~~~~~~~a  111 (120)
T cd00020          89 EAGGVPKLVNLLD-SSNEDIQKNA  111 (120)
T ss_pred             HCCChHHHHHHHh-cCCHHHHHHH
Confidence            33333333 3333 3334444443

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=85.70  E-value=57  Score=35.26  Aligned_cols=101  Identities=14%  Similarity=0.256  Sum_probs=61.8

Q ss_pred             CEEEEEECCCcEEEEcC-CCceeEEEecCCCc--EEEEEEcC---CCeEEEEe---------CCCcEEEEc--CCceeEE
Q 008510            4 VGIISASHDCTIRLWAL-TGQVLMEMVGHTAI--VYSIDSHA---SGLIVSGS---------EDRFAKIWK--DGVCVQS   66 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~--V~~v~~~p---~g~l~s~s---------~D~tvriWd--~~~~~~~   66 (563)
                      ..++.++.|+.|.-+|. +|+.+.++......  -+.+.-+|   ++.++.++         .++.+...|  +|+.+..
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~  190 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR  190 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence            67778888999999999 89988877543321  01111122   24444443         467788888  7887776


Q ss_pred             Eec--C-------------------CcEE-EEEEccCC-cEEEEeCCC------------------cEEEEEcCCCcee
Q 008510           67 IEH--P-------------------GCVW-DAKFLENG-DIVTACSDG------------------VTRIWTVHSDKVA  104 (563)
Q Consensus        67 l~h--~-------------------~~V~-~v~~~p~g-~i~sgs~Dg------------------~Irvwd~~~~~~~  104 (563)
                      ...  +                   ..|| +.++.+.+ .++.++.|+                  .|.-+|..+++..
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~  269 (488)
T cd00216         191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK  269 (488)
T ss_pred             eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence            652  1                   1223 23444433 477776665                  6888898888743

The alignment model contains an 8-bladed beta-propeller.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=85.43  E-value=2  Score=43.59  Aligned_cols=75  Identities=13%  Similarity=0.090  Sum_probs=56.6

Q ss_pred             EEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc---CCceeEEEe---cCCcEEE
Q 008510            5 GIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK---DGVCVQSIE---HPGCVWD   75 (563)
Q Consensus         5 ~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd---~~~~~~~l~---h~~~V~~   75 (563)
                      .+..++-+.+|+|.|+ +..++.++..| ..+++++|.-+.  .+..|-..|.|.|+|   ....+..+.   ...+|..
T Consensus       208 Ll~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~  286 (463)
T KOG1645|consen  208 LLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHK  286 (463)
T ss_pred             eeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCccee
Confidence            5788999999999999 66777888888 889999998876  788888889999999   333333333   2335666


Q ss_pred             EEEcc
Q 008510           76 AKFLE   80 (563)
Q Consensus        76 v~~~p   80 (563)
                      ++..+
T Consensus       287 i~~~~  291 (463)
T KOG1645|consen  287 IAPVQ  291 (463)
T ss_pred             ecccC
Confidence            66544

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=84.57  E-value=54  Score=38.51  Aligned_cols=58  Identities=9%  Similarity=-0.144  Sum_probs=39.8

Q ss_pred             CCCEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc
Q 008510            2 PGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK   59 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd   59 (563)
                      ++..++.+..+|.|.+-|.....+.....-...|.+.+|+||+ .++-...++++.+-+
T Consensus        79 d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT  137 (1265)
T KOG1920|consen   79 DTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMT  137 (1265)
T ss_pred             ccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe
Confidence            3456777888899999888332222222345779999999998 666666677777654

>PRK02888 nitrous-oxide reductase; Validated

Probab=84.45  E-value=8.2  Score=42.30  Aligned_cols=51  Identities=8%  Similarity=0.036  Sum_probs=41.6

Q ss_pred             CCcEEEEc--C-----CceeEEEecCCcEEEEEEccCCc--EEEEeCCCcEEEEEcCCCc
Q 008510           52 DRFAKIWK--D-----GVCVQSIEHPGCVWDAKFLENGD--IVTACSDGVTRIWTVHSDK  102 (563)
Q Consensus        52 D~tvriWd--~-----~~~~~~l~h~~~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~  102 (563)
                      +++|.+.|  +     .+.+..+.-+...|.|.++|||+  ++++..+.+|.|.|+.+.+
T Consensus       295 gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k  354 (635)
T PRK02888        295 GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD  354 (635)
T ss_pred             CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence            45688898  4     24566677788999999999999  5777889999999998765

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=84.22  E-value=12  Score=39.62  Aligned_cols=68  Identities=21%  Similarity=0.330  Sum_probs=48.2

Q ss_pred             EEEEEEcCCC-eEEEEeCCCcEEE-----Ec------CCceeE----------EEe-cCC-cEEEEEEccCC--c--EEE
Q 008510           35 VYSIDSHASG-LIVSGSEDRFAKI-----WK------DGVCVQ----------SIE-HPG-CVWDAKFLENG--D--IVT   86 (563)
Q Consensus        35 V~~v~~~p~g-~l~s~s~D~tvri-----Wd------~~~~~~----------~l~-h~~-~V~~v~~~p~g--~--i~s   86 (563)
                      |+.|..++.| .++-.|-||-+..     |-      +++..-          .+. .+. .+..++|+|+.  +  +..
T Consensus       106 V~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~i  185 (741)
T KOG4460|consen  106 VYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVL  185 (741)
T ss_pred             EEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEE
Confidence            6778888998 7777777886543     54      333221          122 233 68899999976  4  788


Q ss_pred             EeCCCcEEEEEcCCCc
Q 008510           87 ACSDGVTRIWTVHSDK  102 (563)
Q Consensus        87 gs~Dg~Irvwd~~~~~  102 (563)
                      -++|.+||+||....+
T Consensus       186 L~sdnviRiy~lS~~t  201 (741)
T KOG4460|consen  186 LTSDNVIRIYSLSEPT  201 (741)
T ss_pred             EecCcEEEEEecCCcc
Confidence            8999999999998765

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=83.62  E-value=8.5  Score=42.06  Aligned_cols=95  Identities=15%  Similarity=0.181  Sum_probs=61.9

Q ss_pred             EEECCCcEEEEcC-C----CceeEEEec-CCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEec--C-CcEEEE
Q 008510            8 SASHDCTIRLWAL-T----GQVLMEMVG-HTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIEH--P-GCVWDA   76 (563)
Q Consensus         8 s~s~DgtIrlWd~-~----g~~i~~l~g-H~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~h--~-~~V~~v   76 (563)
                      +...+.+.|.|-. .    .-....+.+ |...|+--++...+ +++-|+.-|.+.+++ .+...+.++.  . +.+...
T Consensus         3 ~~~e~~~~r~~~p~~~~l~~i~~~~~~~~~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~   82 (726)
T KOG3621|consen    3 SSKELCSDREWAPLTEVLERIPALLQPGFFPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVR   82 (726)
T ss_pred             CccccchhhhccchhhhhhhhhhhhccccCcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEE
Confidence            3455666777754 1    112223333 44556555565556 889999999999999 5555555552  2 345555


Q ss_pred             EEccCCc-EEEEeCCCcEEEEEcCCCc
Q 008510           77 KFLENGD-IVTACSDGVTRIWTVHSDK  102 (563)
Q Consensus        77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~  102 (563)
                      ..+++.. +|.|+..|.|.||-+..+.
T Consensus        83 ~vs~~e~lvAagt~~g~V~v~ql~~~~  109 (726)
T KOG3621|consen   83 SVSSVEYLVAAGTASGRVSVFQLNKEL  109 (726)
T ss_pred             EecchhHhhhhhcCCceEEeehhhccC
Confidence            6677766 7889999999999887743

>PHA02713 hypothetical protein; Provisional

Probab=83.31  E-value=23  Score=39.03  Aligned_cols=17  Identities=6%  Similarity=0.520  Sum_probs=13.5

Q ss_pred             EEEEeccc-ceEEEeCcE
Q 008510          161 AYSWDMKE-QKWDKLGEV  177 (563)
Q Consensus       161 ~~~wd~~~-~~w~~~g~v  177 (563)
                      +..+|..+ ..|..++..
T Consensus       482 ve~Ydp~~~~~W~~~~~m  499 (557)
T PHA02713        482 IFRYNTNTYNGWELITTT  499 (557)
T ss_pred             EEEecCCCCCCeeEcccc
Confidence            57899998 799987654

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=82.90  E-value=5.5  Score=42.08  Aligned_cols=100  Identities=21%  Similarity=0.269  Sum_probs=59.0

Q ss_pred             CCCE-EEEEECCCcEEEE--cCCCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc---CCceeEEEe-cCCc
Q 008510            2 PGVG-IISASHDCTIRLW--ALTGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK---DGVCVQSIE-HPGC   72 (563)
Q Consensus         2 ~g~~-l~s~s~DgtIrlW--d~~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd---~~~~~~~l~-h~~~   72 (563)
                      ||+. +++...||...||  |+.++.+..+..-.+.-..=.|+|||  ...+++..|.-.||-   .+...+.++ ..+.
T Consensus       248 DG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~  327 (425)
T COG0823         248 DGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGG  327 (425)
T ss_pred             CCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCC
Confidence            4554 4455557776666  45555455554333333356789999  555667777767776   666556666 3333


Q ss_pred             EEEEEEccCCc-EEEEeC-CCc--EEEEEcCCC
Q 008510           73 VWDAKFLENGD-IVTACS-DGV--TRIWTVHSD  101 (563)
Q Consensus        73 V~~v~~~p~g~-i~sgs~-Dg~--Irvwd~~~~  101 (563)
                      -++-.|+|||+ |+..+. +|.  |.+.|+.++
T Consensus       328 ~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~  360 (425)
T COG0823         328 NSNPVWSPDGDKIVFESSSGGQWDIDKNDLASG  360 (425)
T ss_pred             CcCccCCCCCCEEEEEeccCCceeeEEeccCCC
Confidence            33788999999 654443 444  444444443

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=82.80  E-value=7.6  Score=40.92  Aligned_cols=48  Identities=21%  Similarity=0.452  Sum_probs=41.8

Q ss_pred             cEEEEc-CCceeEEEe-cCCcEEEEEEccCCcEEEEeCCCcEEEEEcCCC
Q 008510           54 FAKIWK-DGVCVQSIE-HPGCVWDAKFLENGDIVTACSDGVTRIWTVHSD  101 (563)
Q Consensus        54 tvriWd-~~~~~~~l~-h~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~~  101 (563)
                      .|+||+ .|+.+.++. ..+.+-++.|..+.++++-..||.+++||....
T Consensus        62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~  111 (410)
T PF04841_consen   62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGE  111 (410)
T ss_pred             EEEEECCCCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCc
Confidence            599999 999999988 347999999999877888899999999998743

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.78  E-value=6  Score=45.30  Aligned_cols=61  Identities=21%  Similarity=0.354  Sum_probs=46.4

Q ss_pred             eEEEEeCCCcEEEEc-CCceeEEE---ecCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceec
Q 008510           45 LIVSGSEDRFAKIWK-DGVCVQSI---EHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVAD  105 (563)
Q Consensus        45 ~l~s~s~D~tvriWd-~~~~~~~l---~h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~  105 (563)
                      .++.|+..|.|-..| +++.-+..   ...++|.+++|+.+|. ++.|=.+|.|.+||...++.+.
T Consensus       101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~  166 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILK  166 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCccee
Confidence            577777778888888 65432211   2455999999999999 7778889999999999987443

>PRK02888 nitrous-oxide reductase; Validated

Probab=82.39  E-value=13  Score=40.82  Aligned_cols=96  Identities=13%  Similarity=0.079  Sum_probs=65.4

Q ss_pred             CCCEEEEEECCCcEEEEcC-C----C-ceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCc---------
Q 008510            2 PGVGIISASHDCTIRLWAL-T----G-QVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGV---------   62 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~----g-~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~---------   62 (563)
                      +|++...  ++++|.+.|. +    + +.+..+. =....+.++++|||  .++++..+.+|.|.|  ..+         
T Consensus       287 dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~  363 (635)
T PRK02888        287 AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKP  363 (635)
T ss_pred             CCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCc
Confidence            3444443  3678999998 5    3 3444443 34556899999999  567777799999999  212         


Q ss_pred             ---eeEEEecCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCC
Q 008510           63 ---CVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHS  100 (563)
Q Consensus        63 ---~~~~l~h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~  100 (563)
                         ....+.-...-...+|.++|. ..|--.|+.|-.|++..
T Consensus       364 ~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        364 RDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             cceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence               122333333455678988888 66777899999999876

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=82.33  E-value=8.6  Score=40.87  Aligned_cols=93  Identities=17%  Similarity=0.236  Sum_probs=50.4

Q ss_pred             CCEEEEEECCCcEEEE-cCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEEE
Q 008510            3 GVGIISASHDCTIRLW-ALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKF   78 (563)
Q Consensus         3 g~~l~s~s~DgtIrlW-d~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~~   78 (563)
                      .+.+|+-....+|+++ +.+.+..+.+.-. ..+..+-.   | .+...+.+ .|.+||  +++.++.+..+. |..|.|
T Consensus        79 ~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~-vk~V~W  152 (443)
T PF04053_consen   79 RNRYAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVSA-VKYVIW  152 (443)
T ss_dssp             SSEEEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-E--EEEEE
T ss_pred             CccEEEEECCCeEEEEEcCccccceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecCC-CcEEEE
Confidence            4567888878899995 4544433344322 12333322   6 55555544 899999  789999998664 999999


Q ss_pred             ccCCcEEEEeCCCcEEEEEcCCC
Q 008510           79 LENGDIVTACSDGVTRIWTVHSD  101 (563)
Q Consensus        79 ~p~g~i~sgs~Dg~Irvwd~~~~  101 (563)
                      +++|++++-..+..+.+++.+..
T Consensus       153 s~~g~~val~t~~~i~il~~~~~  175 (443)
T PF04053_consen  153 SDDGELVALVTKDSIYILKYNLE  175 (443)
T ss_dssp             -TTSSEEEEE-S-SEEEEEE-HH
T ss_pred             ECCCCEEEEEeCCeEEEEEecch
Confidence            99998444444668888877665

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=81.77  E-value=16  Score=40.93  Aligned_cols=77  Identities=13%  Similarity=0.169  Sum_probs=55.1

Q ss_pred             EEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-C-CceeEEEe---cC----CcEE
Q 008510            6 IISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-D-GVCVQSIE---HP----GCVW   74 (563)
Q Consensus         6 l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~-~~~~~~l~---h~----~~V~   74 (563)
                      +++|=.-|.+.+|.. +.+.-.....|+..|..+.|+|+| .++|+..-|.|.+|. + ...+++..   |.    -..|
T Consensus        74 La~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~  153 (1416)
T KOG3617|consen   74 LAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLW  153 (1416)
T ss_pred             HhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEE
Confidence            455556788999998 444444445799999999999999 999999999999999 3 22233322   32    2567


Q ss_pred             EEEEccCC
Q 008510           75 DAKFLENG   82 (563)
Q Consensus        75 ~v~~~p~g   82 (563)
                      |...++++
T Consensus       154 cfRL~~~~  161 (1416)
T KOG3617|consen  154 CFRLSYDR  161 (1416)
T ss_pred             EEecCCCh
Confidence            77777764

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=81.69  E-value=41  Score=35.22  Aligned_cols=43  Identities=14%  Similarity=0.102  Sum_probs=33.5

Q ss_pred             cCCcEEEEEEccCCcEEEEeCCCcEEEEEcCCCceeceeeecc
Q 008510           69 HPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEA  111 (563)
Q Consensus        69 h~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~  111 (563)
                      ..+.|.+++.+.=|=++.|..+|.+.|.|+|....+....+..
T Consensus        85 ~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~  127 (395)
T PF08596_consen   85 KQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRE  127 (395)
T ss_dssp             -S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG
T ss_pred             cCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccc
Confidence            3568999999866668999999999999999988776666555

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=81.59  E-value=0.4  Score=51.24  Aligned_cols=96  Identities=17%  Similarity=0.191  Sum_probs=63.5

Q ss_pred             CEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcC-CC-eEEEEeCCCcEEEEc----CCceeEEEec-----CCc
Q 008510            4 VGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHA-SG-LIVSGSEDRFAKIWK----DGVCVQSIEH-----PGC   72 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p-~g-~l~s~s~D~tvriWd----~~~~~~~l~h-----~~~   72 (563)
                      +.+.+|.....++++|+...+.....-.+..|..+.+.| .+ ++++-+ |+-|-+||    ..+.++.+.|     +..
T Consensus       167 klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~  245 (783)
T KOG1008|consen  167 KLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQ  245 (783)
T ss_pred             chhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccc
Confidence            456677777788888873333222222345567778888 44 666655 99999999    3344555543     334


Q ss_pred             EEEEEEccC--CcEEEEeCC-CcEEEEEcCC
Q 008510           73 VWDAKFLEN--GDIVTACSD-GVTRIWTVHS  100 (563)
Q Consensus        73 V~~v~~~p~--g~i~sgs~D-g~Irvwd~~~  100 (563)
                      +..++|+|.  |.+++.+.| ++||.+|+..
T Consensus       246 l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  246 LFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             eeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            999999995  447777666 6899999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	563
3psp_A	425	Crystal Structure Of Pul And Pfu Domain Length = 42		5e-29
3pst_A	425	Crystal Structure Of Pul And Pfu(Mutate) Domain Len		1e-28
3l3f_X	362	Crystal Structure Of A Pfu-Pul Domain Pair Of Sacch		9e-25
3ebb_A	304	PlapP97 COMPLEX Length = 304		2e-13
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-08
2k89_A	80	Solution Structure Of A Novel Ubiquitin-Binding Dom		4e-08
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		5e-08
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		3e-07
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		3e-07
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		3e-07
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		4e-07
2gnq_A	336	Structure Of Wdr5 Length = 336		4e-07
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		5e-07
2h9l_A	329	Wdr5delta23 Length = 329		5e-07
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		5e-07
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		5e-07
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		5e-07
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		6e-07
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		6e-07
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		6e-07
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		6e-07
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		6e-07
2g99_A	308	Structural Basis For The Specific Recognition Of Me		6e-07
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		7e-07
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		7e-07
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		3e-05
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		4e-05
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		4e-05
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		5e-05
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		5e-05
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		5e-05
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		9e-05
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		9e-05
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		2e-04
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		5e-04

>pdb|3PSP|A Chain A, Crystal Structure Of Pul And Pfu Domain Length = 425

Iteration: 1
 Score =  125 bits (315), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 115/353 (32%), Positives = 165/353 (46%), Gaps = 58/353 (16%)
Query: 138 EALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPI-LDGIQYD 196
           E LQ PG   GQ  VV+    G   +       W K+G+VV     G ++ I  +G  YD
Sbjct: 38  EILQSPGRKEGQIVVVK-SPQGTIEAHQFSNSSWKKVGDVVGAGATGNDKKIEFEGKTYD 96
Query: 197 YVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQQIVEFILQNTGQKDFTL 256
           YVFDVDI DG+P  KLP N SDNPY AAD +L +  LP SYR Q+V+FIL+NT       
Sbjct: 97  YVFDVDIEDGKPPLKLPINVSDNPYTAADNFLARYELPMSYRDQVVQFILKNT------- 149
Query: 257 NTSFRDPYTGASAYVPGQPSSMSAI-PAKPT-FKHIPKKGMLIFDAAQFDGILKKIMEFN 314
                    G S   P   +S SA+ P+K +  K +P K  LI +    D I   I++ N
Sbjct: 150 --------NGISLDQPNDNASSSAVSPSKTSVMKVLPVKQYLIMENYNPDTIFNGIVKIN 201
Query: 315 -NALLFDLEKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDISLLLKLLKTWPPAM 373
            N   FD         E+      A+  I  D S     SFA+        +   W   +
Sbjct: 202 SNEKTFD--------DEILAQIGGALHDI--DESWELLLSFANT-------IRSNW--EI 242
Query: 374 IFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPANLLTGIRAVTNLF 433
             P  DI+R          L++K +   +D+  + IE+   N  +   +LT +R + N F
Sbjct: 243 KTPAYDIVR----------LIVKKLPYSSDI-KDYIEEGLGNKNITLTMLT-VRILVNCF 290
Query: 434 KNSSW-YSWLQKNRS-----EILDA-FSSCYSSSNKNVQLSYSTLILNYAVLL 479
            N +W    L+ N+      E +D  FS   +  ++N+ ++ STLI NY+ L+
Sbjct: 291 NNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALV 343

>pdb|3PST|A Chain A, Crystal Structure Of Pul And Pfu(Mutate) Domain Length = 425

Iteration: 1
 Score =  124 bits (312), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 115/353 (32%), Positives = 165/353 (46%), Gaps = 58/353 (16%)
Query: 138 EALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPI-LDGIQYD 196
           E LQ PG   GQ  VV+    G   +       W K+G+VV     G ++ I  +G  YD
Sbjct: 38  EILQSPGRKEGQIVVVK-SPQGTIEAHQFSNSSWKKVGDVVGAGATGNDKKIEFEGKTYD 96
Query: 197 YVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQQIVEFILQNTGQKDFTL 256
           YVFDVDI DG+P  KLP N SDNPY AAD +L +  LP SYR Q+V+ IL+NT       
Sbjct: 97  YVFDVDIEDGKPPLKLPINVSDNPYTAADNFLARYELPMSYRDQVVQLILKNT------- 149
Query: 257 NTSFRDPYTGASAYVPGQPSSMSAI-PAKPT-FKHIPKKGMLIFDAAQFDGILKKIMEFN 314
                    G S   P   +S SA+ P+K +  K +P K  LI +    D IL  I++ N
Sbjct: 150 --------NGISLDQPNDNASSSAVSPSKTSVMKVLPVKQYLIMENYNPDTILNGIVKIN 201
Query: 315 -NALLFDLEKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDISLLLKLLKTWPPAM 373
            N   FD         E+      A+  I  D S     SFA+        +   W   +
Sbjct: 202 SNEKTFD--------DEILAQIGGALHDI--DESWELLLSFANT-------IRSNW--EI 242
Query: 374 IFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPANLLTGIRAVTNLF 433
             P  DI+R          L++K +   +D+  + IE+   N  +   +LT +R + N F
Sbjct: 243 KTPAYDIVR----------LIVKKLPYSSDI-KDYIEEGLGNKNITLTMLT-VRILVNCF 290
Query: 434 KNSSW-YSWLQKNRS-----EILDA-FSSCYSSSNKNVQLSYSTLILNYAVLL 479
            N +W    L+ N+      E +D  FS   +  ++N+ ++ STLI NY+ L+
Sbjct: 291 NNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALV 343

>pdb|3L3F|X Chain X, Crystal Structure Of A Pfu-Pul Domain Pair Of Saccharomyces Cerevisiae Doa1UFD3 Length = 362

Iteration: 1
 Score =  111 bits (278), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 105/320 (32%), Positives = 152/320 (47%), Gaps = 57/320 (17%)
Query: 171 WDKLGEVVDGPDDGMNRPI-LDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLL 229
           W K+G+VV     G ++ I  +G  YDYVFDVDI DG+P  KLP N SDNPY AAD +L 
Sbjct: 7   WKKVGDVVGAGATGNDKKIEFEGKTYDYVFDVDIEDGKPPLKLPINVSDNPYTAADNFLA 66
Query: 230 KENLPFSYRQQIVEFILQNTGQKDFTLNTSFRDPYTGASAYVPGQPSSMSAI-PAKPTF- 287
           +  LP SYR Q+V+FIL+NT                G S   P   +S SA+ P+K +  
Sbjct: 67  RYELPXSYRDQVVQFILKNTN---------------GISLDQPNDNASSSAVSPSKTSVX 111
Query: 288 KHIPKKGMLIFDAAQFDGILKKIMEFN-NALLFDLEKKNLSMSELETSRVAAVVKILKDT 346
           K +P K  LI +    D I   I++ N N   FD         E+      A+  I  D 
Sbjct: 112 KVLPVKQYLIXENYNPDTIFNGIVKINSNEKTFD--------DEILAQIGGALHDI--DE 161
Query: 347 SHYHCSSFADVDISLLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLM 406
           S     SFA+        +   W   +  P  DI+R          L++K +   +D+  
Sbjct: 162 SWELLLSFANT-------IRSNW--EIKTPAYDIVR----------LIVKKLPYSSDI-K 201
Query: 407 EMIEKVSSNPTLPANLLTGIRAVTNLFKNSSW-YSWLQKNRS-----EILDA-FSSCYSS 459
           + IE+   N  +    LT +R + N F N +W    L+ N+      E +D  FS   + 
Sbjct: 202 DYIEEGLGNKNITLTXLT-VRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAK 260
Query: 460 SNKNVQLSYSTLILNYAVLL 479
            ++N+ ++ STLI NY+ L+
Sbjct: 261 QSQNLAIAVSTLIFNYSALV 280

>pdb|3EBB|A Chain A, PlapP97 COMPLEX Length = 304

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 126/295 (42%), Gaps = 37/295 (12%)
Query: 262 DPYTGASAYVPGQPSSMSAIPAKPTFKHIPKKGMLIFDAAQFDGILKKIMEFNNALLFDL 321
           DP+TG SAY         +  +K    + PKK  + FD A    IL K+ E N       
Sbjct: 24  DPFTGNSAY--------RSAASKTXNIYFPKKEAVTFDQANPTQILGKLKELNGT---AP 72
Query: 322 EKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDISLLLKLL---KTWPPAMIFPVI 378
           E+K L+  +L          +L+      C+S ++      L++L      P  ++FP +
Sbjct: 73  EEKKLTEDDL---------ILLEKILSLICNSSSEKPTVQQLQILWKAINCPEDIVFPAL 123
Query: 379 DILRMTILHPDGASLLLKHVENQ--NDVLMEMIEKVSSNPT-LPANLLTGIRAVTNLFKN 435
           DILR++I HP          E    +  L+ ++     NP   PAN L  +R   N F  
Sbjct: 124 DILRLSIKHPSVNENFCNEKEGAQFSSHLINLL-----NPKGKPANQLLALRTFCNCFVG 178
Query: 436 SSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVXXXX 495
            +        R  +        S SNKN+ ++ +TL LNY+V   +  + EG++      
Sbjct: 179 QAGQKLXXSQRESLXSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQC-LSL 237
Query: 496 XXXXXXXXXXVDSKYRALVAIGTLMLE-----GLVKKIALDFDVGNIARVAKASK 545
                     +++ +R LVA+GTL+ +      L K + +D  +   + V++ +K
Sbjct: 238 ISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAK 292

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 54/98 (55%), Gaps = 4/98 (4%)
Query: 3   GVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIW-KD 60
           G  I SAS D T++LW   GQ+L  + GH++ V+ +     G  I S S+D+  K+W ++
Sbjct: 110 GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 169
Query: 61  GVCVQSIE-HPGCVWDAKFLENGDIVTACSDGVT-RIW 96
           G  +Q++  H   VW   F  +G  + + SD  T ++W
Sbjct: 170 GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 207

>pdb|2K89|A Chain A, Solution Structure Of A Novel Ubiquitin-Binding Domain From Human Plaa (Pfuc, Gly76-Pro77 Cis Isomer) Length = 80

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 41/61 (67%)
Query: 189 ILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQQIVEFILQN 248
           + +G ++DYVF +D+ +G P+ KLPYN SD+P+  A  +L K +L   +  Q+ +FI+ N
Sbjct: 10  LYEGKEFDYVFSIDVNEGGPSYKLPYNTSDDPWLTAYNFLQKNDLNPMFLDQVAKFIIDN 69
Query: 249 T 249
           T
Sbjct: 70  T 70

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 4/120 (3%)
Query: 3   GVGIISASHDCTIRLW-ALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIW--K 59
           G  I+S S D T+++W A+TG+ L  +VGHT  V+S       +I+SGS DR  K+W  +
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS-SQMRDNIIISGSTDRTLKVWNAE 187
Query: 60  DGVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQY 119
            G C+ ++           L    +V+   D   R+W + + +    L     A    QY
Sbjct: 188 TGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY 247

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 62/108 (57%), Gaps = 6/108 (5%)
Query: 6   IISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSH-ASGLIVSGSEDRFAKIW--KDG 61
           ++SAS D T+++W ++ G+ L  + GH+  V+  + +  S LIVSGS D   +IW  K G
Sbjct: 83  LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 142
Query: 62  VCVQSI-EHPGCVWDAKFLENGDIVTACS-DGVTRIWTVHSDKVADSL 107
           +C++++  H   V    F  +G ++ + S DG+ RIW   S +   +L
Sbjct: 143 MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 62/108 (57%), Gaps = 6/108 (5%)
Query: 6   IISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSH-ASGLIVSGSEDRFAKIW--KDG 61
           ++SAS D T+++W ++ G+ L  + GH+  V+  + +  S LIVSGS D   +IW  K G
Sbjct: 83  LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 142
Query: 62  VCVQSI-EHPGCVWDAKFLENGDIVTACS-DGVTRIWTVHSDKVADSL 107
           +C++++  H   V    F  +G ++ + S DG+ RIW   S +   +L
Sbjct: 143 MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 6   IISASHDCTIRLW-ALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIW--KDGV 62
            IS S+D  I+L    TG VL    GH + VY I    +G IVS  EDR  +IW  ++G 
Sbjct: 198 FISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGS 257
Query: 63  CVQSIEHPG-CVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEA 111
             Q I  P   +W      NGDI+   SD + RI++    + A   E++ 
Sbjct: 258 LKQVITLPAISIWSVDCXSNGDIIVGSSDNLVRIFSQEKSRWASEDEIKG 307

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 6   IISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSHA-SGLIVSGSEDRFAKIW--KDG 61
           ++SAS D T+++W ++ G+ L  + GH+  V+  + +  S LIVSGS D   +IW  K G
Sbjct: 102 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 161
Query: 62  VCVQSI-EHPGCVWDAKFLENGDIVTACS-DGVTRIWTVHSDKVADSL 107
            C++++  H   V    F  +G ++ + S DG+ RIW   S +   +L
Sbjct: 162 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 209

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 6   IISASHDCTIRLWALT-GQVLMEMVGHTAIVYSID-SHASGLIVSGSEDRFAKIW--KDG 61
           ++SAS D T+++W ++ G+ L  + GH+  V+  + +  S LIVSGS D   +IW  K G
Sbjct: 104 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 163
Query: 62  VCVQSI-EHPGCVWDAKFLENGDIVTACS-DGVTRIWTVHSDKVADSL 107
            C++++  H   V    F  +G ++ + S DG+ RIW   S +   +L
Sbjct: 164 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 211

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 6   IISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSHA-SGLIVSGSEDRFAKIW--KDG 61
           ++SAS D T+++W ++ G+ L  + GH+  V+  + +  S LIVSGS D   +IW  K G
Sbjct: 86  LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 145
Query: 62  VCVQSI-EHPGCVWDAKFLENGDIVTACS-DGVTRIWTVHSDKVADSL 107
            C++++  H   V    F  +G ++ + S DG+ RIW   S +   +L
Sbjct: 146 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 6   IISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSH-ASGLIVSGSEDRFAKIW--KDG 61
           ++SAS D T+++W ++ G+ L  + GH+  V+  + +  S LIVSGS D   +IW  K G
Sbjct: 97  LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 156
Query: 62  VCVQSI-EHPGCVWDAKFLENGDIVTACS-DGVTRIWTVHSDKVADSL 107
            C++++  H   V    F  +G ++ + S DG+ RIW   S +   +L
Sbjct: 157 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 204

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 6   IISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSHA-SGLIVSGSEDRFAKIW--KDG 61
           ++SAS D T+++W ++ G+ L  + GH+  V+  + +  S LIVSGS D   +IW  K G
Sbjct: 86  LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 145
Query: 62  VCVQSI-EHPGCVWDAKFLENGDIVTACS-DGVTRIWTVHSDKVADSL 107
            C++++  H   V    F  +G ++ + S DG+ RIW   S +   +L
Sbjct: 146 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 6   IISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSH-ASGLIVSGSEDRFAKIW--KDG 61
           ++SAS D T+++W ++ G+ L  + GH+  V+  + +  S LIVSGS D   +IW  K G
Sbjct: 83  LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 142
Query: 62  VCVQSI-EHPGCVWDAKFLENGDIVTACS-DGVTRIWTVHSDKVADSL 107
            C++++  H   V    F  +G ++ + S DG+ RIW   S +   +L
Sbjct: 143 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 6   IISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSH-ASGLIVSGSEDRFAKIW--KDG 61
           ++SAS D T+++W ++ G+ L  + GH+  V+  + +  S LIVSGS D   +IW  K G
Sbjct: 83  LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 142
Query: 62  VCVQSI-EHPGCVWDAKFLENGDIVTACS-DGVTRIWTVHSDKVADSL 107
            C++++  H   V    F  +G ++ + S DG+ RIW   S +   +L
Sbjct: 143 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 6   IISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSH-ASGLIVSGSEDRFAKIW--KDG 61
           ++SAS D T+++W ++ G+ L  + GH+  V+  + +  S LIVSGS D   +IW  K G
Sbjct: 80  LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 139
Query: 62  VCVQSI-EHPGCVWDAKFLENGDIVTACS-DGVTRIWTVHSDKVADSL 107
            C++++  H   V    F  +G ++ + S DG+ RIW   S +   +L
Sbjct: 140 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 187

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 6   IISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSH-ASGLIVSGSEDRFAKIW--KDG 61
           ++SAS D T+++W ++ G+ L  + GH+  V+  + +  S LIVSGS D   +IW  K G
Sbjct: 81  LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 140
Query: 62  VCVQSI-EHPGCVWDAKFLENGDIVTACS-DGVTRIWTVHSDKVADSL 107
            C++++  H   V    F  +G ++ + S DG+ RIW   S +   +L
Sbjct: 141 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 188

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 6   IISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSH-ASGLIVSGSEDRFAKIW--KDG 61
           ++SAS D T+++W ++ G+ L  + GH+  V+  + +  S LIVSGS D   +IW  K G
Sbjct: 80  LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 139
Query: 62  VCVQSI-EHPGCVWDAKFLENGDIVTACS-DGVTRIWTVHSDKVADSL 107
            C++++  H   V    F  +G ++ + S DG+ RIW   S +   +L
Sbjct: 140 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 187

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 6   IISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSH-ASGLIVSGSEDRFAKIW--KDG 61
           ++SAS D T+++W ++ G+ L  + GH+  V+  + +  S LIVSGS D   +IW  K G
Sbjct: 86  LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 145
Query: 62  VCVQSI-EHPGCVWDAKFLENGDIVTACS-DGVTRIWTVHSDKVADSL 107
            C++++  H   V    F  +G ++ + S DG+ RIW   S +   +L
Sbjct: 146 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 6   IISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSH-ASGLIVSGSEDRFAKIW--KDG 61
           ++SAS D T+++W ++ G+ L  + GH+  V+  + +  S LIVSGS D   +IW  K G
Sbjct: 85  LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 144
Query: 62  VCVQSI-EHPGCVWDAKFLENGDIVTACS-DGVTRIWTVHSDKVADSL 107
            C++++  H   V    F  +G ++ + S DG+ RIW   S +   +L
Sbjct: 145 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 192

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 6   IISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSH-ASGLIVSGSEDRFAKIW--KDG 61
           ++SAS D T+++W ++ G+ L  + GH+  V+  + +  S LIVSGS D   +IW  K G
Sbjct: 76  LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 135
Query: 62  VCVQSI-EHPGCVWDAKFLENGDIVTACS-DGVTRIWTVHSDKVADSL 107
            C++++  H   V    F  +G ++ + S DG+ RIW   S +   +L
Sbjct: 136 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 183

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 6   IISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSH-ASGLIVSGSEDRFAKIW--KDG 61
           ++SAS D T+++W ++ G+ L  + GH+  V+  + +  S LIVSGS D   +IW  K G
Sbjct: 83  LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 142
Query: 62  VCVQSI-EHPGCVWDAKFLENGDIVTACS-DGVTRIWTVHSDKVADSL 107
            C++++  H   V    F  +G ++ + S DG+ RIW   S +   +L
Sbjct: 143 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 6   IISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSH-ASGLIVSGSEDRFAKIW--KDG 61
           ++SAS D T+++W ++ G+ L  + GH+  V+  + +  S LIVSGS D   +IW  K G
Sbjct: 79  LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 138
Query: 62  VCVQSI-EHPGCVWDAKFLENGDIVTACS-DGVTRIWTVHSDKVADSL 107
            C++++  H   V    F  +G ++ + S DG+ RIW   S +   +L
Sbjct: 139 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 186

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 6/101 (5%)
Query: 2   PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIW- 58
           PG  ++S S D TI++W + TG  LM +VGH   V  +  H+ G  I+S ++D+  ++W 
Sbjct: 307 PGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD 366
Query: 59  -KDGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIW 96
            K+  C++++  H   V    F +    +VT   D   ++W
Sbjct: 367 YKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 11/108 (10%)
Query: 3   GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSID-SHASGLIVSGSEDRFAKIWK- 59
           G   +SAS D T+RLW + TG+     VGH + V S+D    + +I+SGS D+  K+W  
Sbjct: 77  GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI 136
Query: 60  DGVCVQS-IEHPGCVWDAKFLENGD-------IVTACSDGVTRIWTVH 99
            G C+ + + H   V   + + N         I++A +D + + W ++
Sbjct: 137 KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 11/108 (10%)
Query: 3   GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSID-SHASGLIVSGSEDRFAKIWK- 59
           G   +SAS D T+RLW + TG+     VGH + V S+D    + +I+SGS D+  K+W  
Sbjct: 77  GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI 136
Query: 60  DGVCVQS-IEHPGCVWDAKFLENGD-------IVTACSDGVTRIWTVH 99
            G C+ + + H   V   + + N         I++A +D + + W ++
Sbjct: 137 KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 11/108 (10%)
Query: 3   GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSID-SHASGLIVSGSEDRFAKIWK- 59
           G   +SAS D T+RLW + TG+     VGH + V S+D    + +I+SGS D+  K+W  
Sbjct: 71  GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI 130
Query: 60  DGVCVQS-IEHPGCVWDAKFLENGD-------IVTACSDGVTRIWTVH 99
            G C+ + + H   V   + + N         I++A +D + + W ++
Sbjct: 131 KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 178

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 11/108 (10%)
Query: 3   GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSID-SHASGLIVSGSEDRFAKIWK- 59
           G   +SAS D T+RLW + TG+     VGH + V S+D    + +I+SGS D+  K+W  
Sbjct: 77  GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI 136
Query: 60  DGVCVQS-IEHPGCVWDAKFLENGD-------IVTACSDGVTRIWTVH 99
            G C+ + + H   V   + + N         I++A +D + + W ++
Sbjct: 137 KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 11/108 (10%)
Query: 3   GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSID-SHASGLIVSGSEDRFAKIWK- 59
           G   +SAS D T+RLW + TG+     VGH + V S+D    + +I+SGS D+  K+W  
Sbjct: 77  GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI 136
Query: 60  DGVCVQS-IEHPGCVWDAKFLENGD-------IVTACSDGVTRIWTVH 99
            G C+ + + H   V   + + N         I++A +D + + W ++
Sbjct: 137 KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 6   IISASHDCTIRLW-ALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIW--KDGV 62
           +I+ + D  IR++ ++  + L+++ GH   V+++     G++VSGS DR  ++W  K G 
Sbjct: 135 VITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGC 194
Query: 63  CVQSIE-HPGCVWDAKFLENGD---IVTACSDGVTRIW 96
           C    E H   V     +E  +   IVT   D    +W
Sbjct: 195 CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 6   IISASHDCTIRLW-ALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIW--KDGV 62
           +I+ + D  IR++ ++  + L+++ GH   V+++     G++VSGS DR  ++W  K G 
Sbjct: 135 VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGC 194
Query: 63  CVQSIE-HPGCVWDAKFLENGD---IVTACSDGVTRIW 96
           C    E H   V     +E  +   IVT   D    +W
Sbjct: 195 CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 3   GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSID-SHASGLIVSGSEDRFAKIWK- 59
           G   +SAS D T+RLW + TG+     VGH + V S+D    +  I+SGS D+  K+W  
Sbjct: 77  GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTI 136
Query: 60  DGVCVQSI 67
            G C+ ++
Sbjct: 137 KGQCLATL 144

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 24/123 (19%)
Query: 3   GVGIISASHDCTIRLWALTGQ-VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIW-- 58
           G  + + + D  IR+W +  + ++M + GH   +YS+D   SG  +VSGS DR  +IW  
Sbjct: 135 GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDL 194
Query: 59  -----------KDGVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSL 107
                      +DGV   ++  PG   D K++  G +     D   R+W   +  + + L
Sbjct: 195 RTGQCSLTLSIEDGVTTVAVS-PG---DGKYIAAGSL-----DRAVRVWDSETGFLVERL 245
Query: 108 ELE 110
           + E
Sbjct: 246 DSE 248

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	563
3pst_A	425	Protein DOA1; protein degradation, CDC48, ubiquiti	100.0
3l3f_X	362	Protein DOA1, DOA1/UFD3; armadillo-like repeat str	100.0
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	100.0
3gae_A	253	Protein DOA1; UFD3, CDC48, armadillo repeat, nucle	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.92
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.91
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.9
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.9
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.89
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.88
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.88
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.88
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.88
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.88
2pm7_B	297	Protein transport protein SEC13, protein transport	99.88
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.87
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.87
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.87
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.87
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.87
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.86
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.86
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.86
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.85
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.85
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.85
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.85
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.85
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.84
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.84
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.84
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.84
2k89_A	80	PLA2P, PLAP, phospholipase A-2-activating protein;	99.84
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.84
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.83
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.83
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.82
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.82
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.82
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.82
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.82
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.81
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.81
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.81
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.81
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.81
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.81
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.8
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.8
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.8
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.79
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.79
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.79
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.79
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.79
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.79
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.78
2pm7_B	297	Protein transport protein SEC13, protein transport	99.78
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.78
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.78
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.78
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.78
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.78
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.78
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.77
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.77
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.76
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.76
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.76
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.76
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.76
3jro_A	753	Fusion protein of protein transport protein SEC13	99.76
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.76
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.76
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.76
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.75
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.75
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.75
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.75
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.75
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.74
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.74
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.74
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.74
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.73
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.73
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.73
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.73
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.73
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.72
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.72
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.72
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.72
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.72
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.71
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.71
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.71
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.71
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.71
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.71
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.7
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.7
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.7
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.69
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.69
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.68
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.68
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.68
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.67
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.67
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.67
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.66
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.66
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.66
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.66
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.65
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.65
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.65
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.65
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.64
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.64
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.63
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.62
3jro_A	753	Fusion protein of protein transport protein SEC13	99.62
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.62
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.62
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.61
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.6
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.59
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.58
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.55
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.49
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.47
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.43
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.31
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.29
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.28
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.24
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.23
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.22
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.21
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.2
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.19
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.18
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.16
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.15
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.14
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.11
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.02
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.0
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.0
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.0
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.96
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.96
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.92
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.89
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	98.88
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	98.86
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.85
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.83
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.83
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.82
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.79
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.76
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.76
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.75
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.75
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.69
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	98.69
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	98.67
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.65
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.65
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	98.64
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.57
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.54
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.53
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.5
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.49
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.47
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.44
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.41
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.33
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.3
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.28
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.28
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.24
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.17
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.16
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.14
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.14
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.12
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.08
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.07
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	97.98
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	97.94
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	97.92
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	97.82
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	97.79
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.79
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	97.78
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	97.77
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	97.72
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.67
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.66
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	97.64
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.63
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	97.62
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.62
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.58
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.53
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	97.51
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	97.47
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	97.42
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	97.39
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.32
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.31
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	97.25
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	97.2
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	97.2
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.16
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	97.12
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	97.08
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.07
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	96.99
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	96.95
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	96.94
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	96.94
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	96.91
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	96.91
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	96.91
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	96.86
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	96.83
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	96.81
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	96.79
2ece_A	462	462AA long hypothetical selenium-binding protein;	96.68
2qe8_A	343	Uncharacterized protein; structural genomics, join	96.65
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	96.59
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	96.55
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	96.53
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	96.53
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	96.5
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	96.45
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	96.43
2ece_A	462	462AA long hypothetical selenium-binding protein;	96.38
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	96.09
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	96.09
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	95.89
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	95.86
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	95.77
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	95.77
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	95.6
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	95.6
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	95.52
2qe8_A	343	Uncharacterized protein; structural genomics, join	95.47
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	95.2
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	95.1
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	94.58
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	94.56
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	94.52
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	94.49
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	94.27
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	94.22
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	94.17
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	93.86
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	93.55
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	93.3
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	92.93
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	92.87
4a2l_A	795	BT_4663, two-component system sensor histidine kin	92.64
2p4o_A	306	Hypothetical protein; putative lactonase, structur	92.45
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	92.05
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	91.99
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	91.93
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	91.68
4a2l_A	795	BT_4663, two-component system sensor histidine kin	91.61
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	90.96
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	90.79
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	90.68
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	90.42
2p4o_A	306	Hypothetical protein; putative lactonase, structur	90.11
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	89.84
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	89.55
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	89.55
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	89.48
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	89.27
3v9f_A	781	Two-component system sensor histidine kinase/RESP	88.87
3v9f_A	781	Two-component system sensor histidine kinase/RESP	88.8
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	88.31
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	88.06
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	87.86
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	87.8
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	87.4
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	87.35
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	87.13
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	86.82
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	86.39
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	85.92
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	85.84
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	85.4
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	85.29
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	85.11
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	84.81
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	84.77
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	84.66
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	84.58
3v65_B	386	Low-density lipoprotein receptor-related protein;	84.57
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	84.49
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	84.39
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	84.11
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	83.97
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	83.96
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	83.93
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	83.65
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	83.29
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	82.79
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	82.72
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	82.57
3v65_B	386	Low-density lipoprotein receptor-related protein;	82.53
3nmz_A	458	APC variant protein; protein-protein complex, arma	82.35
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	81.8
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	81.61
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	81.47
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	81.4
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	81.06
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	80.65

>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A

Probab=100.00  E-value=9.7e-71  Score=556.16  Aligned_cols=373  Identities=27%  Similarity=0.436  Sum_probs=249.9

Q ss_pred             eCCCCceeeecccCCCeEEEEecCCCeE-EEEEecccceEEEeCcEeeCC-CCCCCceeecCcccCcEEEEEcCCCCeee
Q 008510          133 DLPGLEALQIPGTNAGQTKVVREGDNGV-AYSWDMKEQKWDKLGEVVDGP-DDGMNRPILDGIQYDYVFDVDIGDGEPTR  210 (563)
Q Consensus       133 d~~~~~~l~~~g~~dg~~~l~~~~~~~~-~~~wd~~~~~w~~~g~v~~~~-~~~~~~~~~~g~~~d~v~~vd~~dg~~~~  210 (563)
                      |+|+.+.+..+|++||+++|++.+++.+ +|+|+  .+.|.++|+|+++. ..+.+|..|+|++|||||+||++||.|++
T Consensus        33 ~lp~~e~l~~~G~~~Gq~~~v~~~~g~v~ay~ws--~~~W~~iG~Vv~~~~~~~~~k~~~~Gk~YDyvf~Vdi~~g~p~l  110 (425)
T 3pst_A           33 GSSPYEILQSPGRKEGQIVVVKSPQGTIEAHQFS--NSSWKKVGDVVGAGATGNDKKIEFEGKTYDYVFDVDIEDGKPPL  110 (425)
T ss_dssp             -------------------------------------------------------CCEEETTEEESEEEEECCSTTCCCE
T ss_pred             CCCCHHHhcCCCCCCCeEEEEECCCCCEEEEEEc--CCceeEEeEEecCCCCCCCCceeecCcccceEEEEEcCCCCccc
Confidence            3999999998999999999999765555 99999  48999999999863 33458999999999999999999999999


Q ss_pred             eecCCCCCChhHHHHHHHHhcCCCcccHHHHHHHHHHhcCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceee
Q 008510          211 KLPYNRSDNPYDAADKWLLKENLPFSYRQQIVEFILQNTGQKDFTLNTSFRDPYTGASAYVPGQPSSMSAIPAKPTFKHI  290 (563)
Q Consensus       211 ~~~~n~~~~~w~~a~~f~~~~~l~~~~~~~v~~fi~~n~~~~~~~~~~~~~~p~~~~~~y~p~~~~~~~~~~~~~~~~~~  290 (563)
                      ++|||.++|||.+|++||.+|+||++|+|||++||++|++|++.+      +||++   +.|++.+    .+..+.+++|
T Consensus       111 kLpyN~~~np~~~A~~Fi~~~~L~~~y~~qi~~FI~~N~~~~~~~------~p~~~---~~~~~~~----~~~~~~~k~l  177 (425)
T 3pst_A          111 KLPINVSDNPYTAADNFLARYELPMSYRDQVVQLILKNTNGISLD------QPNDN---ASSSAVS----PSKTSVMKVL  177 (425)
T ss_dssp             EEEECTTCCHHHHHHHHHHHHTCCGGGHHHHHHHHHHHC------------------------------------CCSSC
T ss_pred             cCCccCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCcccC------CCCCC---CCCCCCC----cccCCCCccc
Confidence            999999999999999999999999999999999999999987632      45543   2233221    2234568999


Q ss_pred             eccceEEecccChHHHHHHHHHHHHhhhcccccccCCCCHHHHHHHHHHHHHhhcCCCccCCCCchhhHHHHHHHHhcCC
Q 008510          291 PKKGMLIFDAAQFDGILKKIMEFNNALLFDLEKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDISLLLKLLKTWP  370 (563)
Q Consensus       291 P~~~~~~f~~~n~~~l~~Kl~efn~~~~~~~~~~~~~l~~~el~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~Wp  370 (563)
                      |+++|++|+++|+++|++||+|||++.        .+|+|+|+..|.+++..+..+.        ...+..+.+++.+||
T Consensus       178 P~~~yl~f~~~n~~~i~~kl~efN~~~--------~~ls~~el~~l~~~l~~~~~~~--------~~l~~~~~kil~~WP  241 (425)
T 3pst_A          178 PVKQYLIMENYNPDTILNGIVKINSNE--------KTFDDEILAQIGGALHDIDESW--------ELLLSFANTIRSNWE  241 (425)
T ss_dssp             CCCCCCCCCCCCHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHTSGGGSH--------HHHHHHHHHHHHHCS
T ss_pred             CccceeeeecCCHHHHHHHHHHhcccc--------cCCCHHHHHHHHHHhccccccH--------HHHHHHHHHHHHhCC
Confidence            999999999999999999999999872        4899999999999886432110        123334569998999


Q ss_pred             CCCccchhcHHHHhhcCCCchhhhhhcccchhhHHHHHHHhhcCCCCCcchHHHHHHHHHhhcCCCcc-HHHHHhh--HH
Q 008510          371 PAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSW-YSWLQKN--RS  447 (563)
Q Consensus       371 ~~~~fP~lDL~Rl~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~lR~l~N~f~~~~~-~~~~~~~--~~  447 (563)
                        .+||+|||+||+++||++++.+           ..++..... +..++|+||++|++||||.++.+ ++++.++  +.
T Consensus       242 --~~FPaLDLLRl~v~~p~~~~~l-----------~~li~~~l~-~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~  307 (425)
T 3pst_A          242 --IKTPAYDIVRLIVKKLPYSSDI-----------KDYIEEGLG-NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYK  307 (425)
T ss_dssp             --CCHHHHHHHHHHGGGCSCGGGG-----------HHHHHHHTT-CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHH
T ss_pred             --cccHHHHHHHHHHcCCchHHHH-----------HHHHHHhcC-CCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHH
Confidence              6999999999999999986533           335555544 34679999999999999999995 5555443  67


Q ss_pred             HHHHHhhhhc----cCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHHhhh-----h--cccChhHHHHHHHHH
Q 008510          448 EILDAFSSCY----SSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAE-----E--ESIEVDSKYRALVAI  516 (563)
Q Consensus       448 ~il~~~~~~~----~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~~~l~-----~--~~~~~Ea~~R~l~Al  516 (563)
                      .+++.+...+    ...|||+|+|+|||+||||+++++.+.+   .++++.+.++|.     .  +++|+||+||+||||
T Consensus       308 ~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~---~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVAL  384 (425)
T 3pst_A          308 SIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD---LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAY  384 (425)
T ss_dssp             HHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSC---TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccch---HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHH
Confidence            7777775443    3458999999999999999999986543   456666666665     2  246999999999999


Q ss_pred             hhhhc-hhHHHHHhhhcChHHHHHHHhh--cCChhHHHHHHHH
Q 008510          517 GTLML-EGLVKKIALDFDVGNIARVAKA--SKETKIAEVGADI  556 (563)
Q Consensus       517 G~l~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~ei  556 (563)
                      |||++ ++++++.++.   ..|+++++.  +.|+||+++++||
T Consensus       385 GtLv~~~~~~~~~a~~---~~~~~~~~~~~~~e~R~~~v~~ei  424 (425)
T 3pst_A          385 GNLATVEPTLRQFANS---VTWLANIKRSYGNVPRFKDIFDDL  424 (425)
T ss_dssp             HHHHHHCHHHHHHHTT---CHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHhcC---HHHHHHHHHhcccchHHHHHHHhc
Confidence            99999 6688888875   367777765  5899999999998

>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.6e-67  Score=521.50  Aligned_cols=343  Identities=27%  Similarity=0.435  Sum_probs=248.6

Q ss_pred             EEecccceEEEeCcEeeCC-CCCCCceeecCcccCcEEEEEcCCCCeeeeecCCCCCChhHHHHHHHHhcCCCcccHHHH
Q 008510          163 SWDMKEQKWDKLGEVVDGP-DDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQQI  241 (563)
Q Consensus       163 ~wd~~~~~w~~~g~v~~~~-~~~~~~~~~~g~~~d~v~~vd~~dg~~~~~~~~n~~~~~w~~a~~f~~~~~l~~~~~~~v  241 (563)
                      +|+  .++|.++|+|+++. ....+|..|+|++|||||+||++||.|++++|||.++|||.+|++||++|+||++|+|||
T Consensus         1 qw~--~~~W~~iG~vv~~~~~~~~~k~~~~g~~yDyvf~vdi~~g~~~~klpyN~~~np~~~A~~F~~~~~l~~~y~~~i   78 (362)
T 3l3f_X            1 QFS--NSSWKKVGDVVGAGATGNDKKIEFEGKTYDYVFDVDIEDGKPPLKLPINVSDNPYTAADNFLARYELPMSYRDQV   78 (362)
T ss_dssp             ------------------------CCEEETTEEESEEEEECCSTTSCCEEEEECTTSCHHHHHHHHHHHTTCCGGGHHHH
T ss_pred             CCC--CCcceEeEEEECCCCCCCCCceeecCcccceEEEEEcCCCCccccCCCcCCCCHHHHHHHHHHHcCCCHHHHHHH
Confidence            577  69999999999863 334589999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeccceEEecccChHHHHHHHHHHHHhhhccc
Q 008510          242 VEFILQNTGQKDFTLNTSFRDPYTGASAYVPGQPSSMSAIPAKPTFKHIPKKGMLIFDAAQFDGILKKIMEFNNALLFDL  321 (563)
Q Consensus       242 ~~fi~~n~~~~~~~~~~~~~~p~~~~~~y~p~~~~~~~~~~~~~~~~~~P~~~~~~f~~~n~~~l~~Kl~efn~~~~~~~  321 (563)
                      ++||++|++|++.+      +||++   +.|++.+    .++.+.+++||+++|++|+++|+++|++||+|||++.    
T Consensus        79 ~~fi~~n~~~~~~~------~p~~~---~~~~~~~----~~~~~~~k~lP~~~yl~f~~~n~~~i~~kl~efN~~~----  141 (362)
T 3l3f_X           79 VQFILKNTNGISLD------QPNDN---ASSSAVS----PSKTSVMKVLPVKQYLIMENYNPDTIFNGIVKINSNE----  141 (362)
T ss_dssp             HHHHHHHCC-------------------------------------CSCCCCCCCCCCCCCHHHHHHHHHHHHHHH----
T ss_pred             HHHHHhcCCCcccC------CCCCC---CCCCCCC----CCCCCCCCcCCccceeeeccCCHHHHHHHHHHHcccc----
Confidence            99999999987632      45543   2233211    2234568999999999999999999999999999872    


Q ss_pred             ccccCCCCHHHHHHHHHHHHHhhcCCCccCCCCchhhHHHHHHHHhcCCCCCccchhcHHHHhhcCCCchhhhhhcccch
Q 008510          322 EKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDISLLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLLKHVENQ  401 (563)
Q Consensus       322 ~~~~~~l~~~el~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~Wp~~~~fP~lDL~Rl~~l~~~~~~~~~~~~~~~  401 (563)
                          .+|+|+|+..|.+++..++.        -....+.++.+++.+||  .+||+|||+||+++||++++++       
T Consensus       142 ----~~ls~~el~~l~~~l~~~~~--------~~~~l~~~~~~i~~~Wp--~~FP~LDLLRl~v~~~~~~~~l-------  200 (362)
T 3l3f_X          142 ----KTFDDEILAQIGGALHDIDE--------SWELLLSFANTIRSNWE--IKTPAYDIVRLIVKKLPYSSDI-------  200 (362)
T ss_dssp             ----CCSCHHHHHHHHHHHTCTTT--------CHHHHHHHHHHHHHHCS--CCHHHHHHHHHHGGGCSCGGGG-------
T ss_pred             ----cCCCHHHHHHHHHHHhcccc--------cHHHHHHHHHHHHhhCC--ccchHHHHHHHHhcCCChHHHH-------
Confidence                48999999999998753221        11223444569898999  4999999999999999987644       


Q ss_pred             hhHHHHHHHhhcCCCCCcchHHHHHHHHHhhcCCCcc-HHHHHhh--HHHHHHHhhhh----ccCCChhHHHHHHHHHHH
Q 008510          402 NDVLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSW-YSWLQKN--RSEILDAFSSC----YSSSNKNVQLSYSTLILN  474 (563)
Q Consensus       402 ~~~~~~~l~~~~~~~~~~~~~ll~lR~l~N~f~~~~~-~~~~~~~--~~~il~~~~~~----~~~~~k~~~~a~atl~~N  474 (563)
                          ..++..+.. +..++|+||++|++||||.|+.+ ++++.++  +..+++.+...    +.+.|||+|+|+|||+||
T Consensus       201 ----~~li~~~~~-~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lN  275 (362)
T 3l3f_X          201 ----KDYIEEGLG-NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFN  275 (362)
T ss_dssp             ----HHHHHHHTT-CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHhcC-CCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHH
Confidence                334544444 34679999999999999999995 5566444  56677776544    334589999999999999


Q ss_pred             HHhhhhhcCCchhhhHHHHHHHHhhh-----hc--ccChhHHHHHHHHHhhhhc-hhHHHHHhhhcChHHHHHHHhh--c
Q 008510          475 YAVLLIEKKDEEGQSHVLSAALEIAE-----EE--SIEVDSKYRALVAIGTLML-EGLVKKIALDFDVGNIARVAKA--S  544 (563)
Q Consensus       475 ~s~~~~~~~~~~~~~~l~~~~~~~l~-----~~--~~~~Ea~~R~l~AlG~l~~-~~~~~~~~~~~~~~~~~~~~~~--~  544 (563)
                      ||+++++.+.+   .++++.+.++|.     .|  ++|+||+||+|||||||++ ++.+++.++.   ..|+++++.  +
T Consensus       276 lAv~~~~~~~~---~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~~~~~~~a~~---~~~~~~~~~~~~  349 (362)
T 3l3f_X          276 YSALVTKGNSD---LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQFANS---VTWLANIKRSYG  349 (362)
T ss_dssp             HHHHHHHTCSC---TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHHHTGGG---CHHHHHHHHHHT
T ss_pred             HHHHHhcccch---HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHHHHhcC---HHHHHHHHHhcc
Confidence            99999986543   455566666665     22  4699999999999999999 6688888875   367777765  5


Q ss_pred             CChhHHHHHHHH
Q 008510          545 KETKIAEVGADI  556 (563)
Q Consensus       545 ~~~~i~~~~~ei  556 (563)
                      .|+||+++++||
T Consensus       350 ~e~R~~~v~~ei  361 (362)
T 3l3f_X          350 NVPRFKDIFDDL  361 (362)
T ss_dssp             TSHHHHHHHHHT
T ss_pred             cchHHHHHHHhc
Confidence            899999999997

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=100.00  E-value=1.8e-57  Score=450.21  Aligned_cols=283  Identities=26%  Similarity=0.381  Sum_probs=229.0

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeccceEEecccChHHHHHHHHHHHHhhhcccccccCCCCHHHHHHH
Q 008510          257 NTSFRDPYTGASAYVPGQPSSMSAIPAKPTFKHIPKKGMLIFDAAQFDGILKKIMEFNNALLFDLEKKNLSMSELETSRV  336 (563)
Q Consensus       257 ~~~~~~p~~~~~~y~p~~~~~~~~~~~~~~~~~~P~~~~~~f~~~n~~~l~~Kl~efn~~~~~~~~~~~~~l~~~el~~l  336 (563)
                      ++.+.|||||++||+||++++        .++|||+++|++|+++|+++|++||+|||++++     .+.+|+|+|+..|
T Consensus        19 ~~~~~Dp~~~~~~y~p~~~~~--------~~k~~P~~~yl~f~~an~~~i~~KL~EfN~~~~-----~~~~Ls~~el~~L   85 (304)
T 3ebb_A           19 SMAGVDPFTGNSAYRSAASKT--------MNIYFPKKEAVTFDQANPTQILGKLKELNGTAP-----EEKKLTEDDLILL   85 (304)
T ss_dssp             -----------------------------CCSSCCCCSCCCCCCCCHHHHHHHHHHHHTTSC-----GGGCCCHHHHHHH
T ss_pred             CCCCCCCCCCCCCcCCCCCCC--------CCCcCCCccceehhccCHHHHHHHHHHHHHccc-----cccCcCHHHHHHH
Confidence            445889999999999998533        489999999999999999999999999999863     4678999999999


Q ss_pred             HHHHHHhhcCCCccCCCCchhhHHHHHHHHhcCCCCCccchhcHHHHhhcCCCchhhhhhcccchhhHHH-HHHHhhcCC
Q 008510          337 AAVVKILKDTSHYHCSSFADVDISLLLKLLKTWPPAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLM-EMIEKVSSN  415 (563)
Q Consensus       337 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~Wp~~~~fP~lDL~Rl~~l~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~  415 (563)
                      ++++..|++++   +..+...+++++.+++ .||.+.+||+|||+|++++||+++.+|+.  +..+..+. .++... .+
T Consensus        86 ~~l~~~l~~~s---~~~~~~~~l~~l~kil-~WP~~~~fPvLDLlRl~~l~p~~~~~~~~--~~~~~~l~~~l~~~~-~~  158 (304)
T 3ebb_A           86 EKILSLICNSS---SEKPTVQQLQILWKAI-NCPEDIVFPALDILRLSIKHPSVNENFCN--EKEGAQFSSHLINLL-NP  158 (304)
T ss_dssp             HHHHHHHHTTC---SSCCCHHHHHHHHHHH-TSCTTTCHHHHHHHHHHTTSHHHHHHHHS--TTTHHHHHHHHHHTT-CT
T ss_pred             HHHHHHHhccC---CCccchHHHHHHHHHH-cCCHHhHHHHHHHHHHHHcCccHHHHhhc--cccchHHHHHHHHhc-CC
Confidence            99999998654   3456777899999998 99999999999999999999999999973  22334444 455443 34


Q ss_pred             CCCcchHHHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHH
Q 008510          416 PTLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAA  495 (563)
Q Consensus       416 ~~~~~~~ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~  495 (563)
                      +..|+|+||++|++||||.++.+++++++++++|++.+..++.+.|||+|+|+||++||||+++++.++.+...++++.+
T Consensus       159 ~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l  238 (304)
T 3ebb_A          159 KGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLI  238 (304)
T ss_dssp             TSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHH
Confidence            55788999999999999999999999999999999999999888899999999999999999999988766677777777


Q ss_pred             HHhhhhcccChhHHHHHHHHHhhhhc-hhHHHHHhhhcChHHHHHHHhh-cCChhHHHHHHHHHHHh
Q 008510          496 LEIAEEESIEVDSKYRALVAIGTLML-EGLVKKIALDFDVGNIARVAKA-SKETKIAEVGADIELLA  560 (563)
Q Consensus       496 ~~~l~~~~~~~Ea~~R~l~AlG~l~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~ei~~ll  560 (563)
                      .++++ +++|+|++||+|+|||||++ ++++.++++.+|+.++++++++ ++++||+||++.|+.+|
T Consensus       239 ~~il~-~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~~l  304 (304)
T 3ebb_A          239 STILE-VVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILNLL  304 (304)
T ss_dssp             HHHHT-TCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHTTC
T ss_pred             HHHHh-ccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHHhC
Confidence            77665 56799999999999999999 7799999999999999998887 57899999999998764

>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.3e-43  Score=339.77  Aligned_cols=234  Identities=19%  Similarity=0.287  Sum_probs=185.1

Q ss_pred             ceeeeccceEEecccChHHHHHHHHHHHHhhhcccccccCCCCHHHHHHHHHHHHHhhcCCCccCCCCchhhHHHHHHHH
Q 008510          287 FKHIPKKGMLIFDAAQFDGILKKIMEFNNALLFDLEKKNLSMSELETSRVAAVVKILKDTSHYHCSSFADVDISLLLKLL  366 (563)
Q Consensus       287 ~~~~P~~~~~~f~~~n~~~l~~Kl~efn~~~~~~~~~~~~~l~~~el~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l  366 (563)
                      +|+||+++|++|+++|+++|++||+|||++.        .+|+|+|+..|++++..++.+.        ...+..+.+++
T Consensus         2 ~k~lP~~~yl~f~~~n~~~i~~Kl~efN~~~--------~~ls~~el~~l~~~l~~l~~~~--------~~~~~~~~ki~   65 (253)
T 3gae_A            2 MKVLPVKQYLIMENYNPDTIFNGIVKINSNE--------KTFDDEILAQIGGALHDIDESW--------ELLLSFANTIR   65 (253)
T ss_dssp             CSSCSCCSCCCCCCCCHHHHHHHHHHHHHHH--------CCSCHHHHHHHHHHHTCHHHHH--------HHHHHHHHHHH
T ss_pred             CcccCCcceeeeecCCHHHHHHHHHHHHhcc--------CCCCHHHHHHHHHHHhcccccH--------HHHHHHHHHHH
Confidence            5899999999999999999999999999873        3899999999999886443111        12334466999


Q ss_pred             hcCCCCCccchhcHHHHhhcCCCchhhhhhcccchhhHHHHHHHhhcCCCCCcchHHHHHHHHHhhcCCCc-cHHHHHhh
Q 008510          367 KTWPPAMIFPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSS-WYSWLQKN  445 (563)
Q Consensus       367 ~~Wp~~~~fP~lDL~Rl~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~lR~l~N~f~~~~-~~~~~~~~  445 (563)
                      .+||  .+||++||+|++++||++++.++           .++..+.. +..++|+||++|++||+|.|+. |++++.++
T Consensus        66 ~~WP--~~fP~lDllRl~~~~~~~~~~l~-----------~~l~~~~~-~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~  131 (253)
T 3gae_A           66 SNWE--IKTPAYDIVRLIVKKLPYSSDIK-----------DYIEEGLG-NKNITLTMLTVRILVNCFNNENWGVKLLESN  131 (253)
T ss_dssp             HHCS--CCHHHHHHHHHHGGGCSCGGGGH-----------HHHHHHTT-CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSH
T ss_pred             HhCC--ccchHHHHHHHHHcCCchHHHHH-----------HHHHHhcC-CCchhHHHHHHHHHHHcccCCchHHHHHhcc
Confidence            8999  79999999999999999877554           24444443 3467899999999999999999 78888777


Q ss_pred             --HHHHHHHhhhhc----cCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHHhhhh----c---ccChhHHHHH
Q 008510          446 --RSEILDAFSSCY----SSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAEE----E---SIEVDSKYRA  512 (563)
Q Consensus       446 --~~~il~~~~~~~----~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~~~l~~----~---~~~~Ea~~R~  512 (563)
                        +..+++.+...+    .+.|||+|+|+||++||||+++++.+.+   .+++..+.+++..    .   ++|+||+||+
T Consensus       132 ~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~~---~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~  208 (253)
T 3gae_A          132 QVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD---LELLPIVADAINTKYGPLEEYQECEEAAYRL  208 (253)
T ss_dssp             HHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCSC---TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHH
T ss_pred             hhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccch---HHHHHHHHHHHHHHhcccccccCCHHHHHHH
Confidence              677777775543    2359999999999999999999986542   3334444444432    2   4589999999


Q ss_pred             HHHHhhhhc-hhHHHHHhhhcChHHHHHHHhh--cCChhHHHHHHHH
Q 008510          513 LVAIGTLML-EGLVKKIALDFDVGNIARVAKA--SKETKIAEVGADI  556 (563)
Q Consensus       513 l~AlG~l~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~ei  556 (563)
                      |+|||||++ ++.++++++.   ..|++++++  +.|+||+++++||
T Consensus       209 LvAlGtL~~~~~~~~~~a~~---~~~~~~~~~~~~~e~R~~~v~~ei  252 (253)
T 3gae_A          209 TVAYGNLATVEPTLRQFANS---VTWLANIKRSYGNVPRFKDIFDDL  252 (253)
T ss_dssp             HHHHHHHHHHSGGGGCCTTT---CHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred             HHHHHHHHhCcHHHHHHhcc---HHHHHHHHHHcccchHHHHHHHhc
Confidence            999999999 6678878775   367766654  5899999999998

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.92  E-value=5.1e-24  Score=217.99  Aligned_cols=207  Identities=19%  Similarity=0.202  Sum_probs=153.9

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEE----EecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCc
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLME----MVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGC   72 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~----l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~   72 (563)
                      +++.|++|+.||+||+||+ +++++..    +.+|.+.|++++|+|+| .+++|+.|++|++||  ++++++++. |.+.
T Consensus        92 ~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~  171 (344)
T 4gqb_B           92 GERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQ  171 (344)
T ss_dssp             TTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred             CCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCc
Confidence            3568999999999999999 6765443    45999999999999999 999999999999999  888999998 9999


Q ss_pred             EEEEEEccCCc--EEEEeCCCcEEEEEcCCCceeceeeecccccc---------cceeEEeeccCCceEEEeCCCCceee
Q 008510           73 VWDAKFLENGD--IVTACSDGVTRIWTVHSDKVADSLELEAYASE---------LSQYKLCRKKVGGLKLEDLPGLEALQ  141 (563)
Q Consensus        73 V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~i~~~d~~~~~~l~  141 (563)
                      |++++|+|++.  +++|+.|++|++||+++++.........+...         -..+.+++..++.|++||++..+.+.
T Consensus       172 V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~  251 (344)
T 4gqb_B          172 VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVL  251 (344)
T ss_dssp             EEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCE
T ss_pred             eEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEE
Confidence            99999999885  78999999999999998875443322221111         12345577889999999998776544


Q ss_pred             ec-ccCCCeEEEEecCC----------CeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCe-
Q 008510          142 IP-GTNAGQTKVVREGD----------NGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEP-  208 (563)
Q Consensus       142 ~~-g~~dg~~~l~~~~~----------~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~-  208 (563)
                      .. +|.+....+.++++          ++.+++||...+.                ...+.||. +.|.++.| ++|.. 
T Consensus       252 ~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~----------------~~~~~~H~-~~V~~v~~sp~~~~l  314 (344)
T 4gqb_B          252 SSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE----------------LFRSQAHR-DFVRDATWSPLNHSL  314 (344)
T ss_dssp             EEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE----------------EEEECCCS-SCEEEEEECSSSTTE
T ss_pred             EEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc----------------EEEEcCCC-CCEEEEEEeCCCCeE
Confidence            32 55544444444433          2334556654432                12245666 88999999 78875 


Q ss_pred             eeeecCCCCCChhHHHH
Q 008510          209 TRKLPYNRSDNPYDAAD  225 (563)
Q Consensus       209 ~~~~~~n~~~~~w~~a~  225 (563)
                      +++.++|+++..|++.+
T Consensus       315 las~s~D~~v~~w~v~~  331 (344)
T 4gqb_B          315 LTTVGWDHQVVHHVVPT  331 (344)
T ss_dssp             EEEEETTSCEEEEECCC
T ss_pred             EEEEcCCCeEEEEECCC
Confidence            56899999999999753

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.91  E-value=1.7e-22  Score=202.54  Aligned_cols=205  Identities=13%  Similarity=0.097  Sum_probs=161.6

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA   76 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v   76 (563)
                      +|.++++|+.||+|++||+ ++++++.+.+|...|.+++|+|++ .+++|+.|++|++||  +++++..+. |++.|+++
T Consensus        24 ~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~  103 (304)
T 2ynn_A           24 TEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI  103 (304)
T ss_dssp             SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             CCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEE
Confidence            5789999999999999999 889999999999999999999999 999999999999999  788888888 99999999


Q ss_pred             EEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccccc---------ceeEEeeccCCceEEEeCCCCceeeec--c
Q 008510           77 KFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL---------SQYKLCRKKVGGLKLEDLPGLEALQIP--G  144 (563)
Q Consensus        77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v---------~~~~~~~~~~~~i~~~d~~~~~~l~~~--g  144 (563)
                      +|+|++. +++|+.|++|++||++++... ...+..|...+         ....+++..|+.|++||+.........  +
T Consensus       104 ~~~~~~~~l~sgs~D~~v~lWd~~~~~~~-~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~  182 (304)
T 2ynn_A          104 AVHPTKPYVLSGSDDLTVKLWNWENNWAL-EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG  182 (304)
T ss_dssp             EECSSSSEEEEEETTSCEEEEEGGGTTEE-EEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECC
T ss_pred             EEcCCCCEEEEECCCCeEEEEECCCCcch-hhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccC
Confidence            9999998 999999999999999877422 12233333322         235667788999999999654322111  2


Q ss_pred             c------------CCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeee
Q 008510          145 T------------NAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRK  211 (563)
Q Consensus       145 ~------------~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~  211 (563)
                      +            +++.+.+..+.| +.+.+||...+...               ..+.||. +.|..+.+ +++..+++
T Consensus       183 ~~~~v~~~~~~~~~~~~~l~s~s~D-~~i~iWd~~~~~~~---------------~~~~~h~-~~v~~~~~~p~~~~l~s  245 (304)
T 2ynn_A          183 QERGVNYVDYYPLPDKPYMITASDD-LTIKIWDYQTKSCV---------------ATLEGHM-SNVSFAVFHPTLPIIIS  245 (304)
T ss_dssp             CTTCEEEEEECCSTTCCEEEEEETT-SEEEEEETTTTEEE---------------EEEECCS-SCEEEEEECSSSSEEEE
T ss_pred             CcCcEEEEEEEEcCCCCEEEEEcCC-CeEEEEeCCCCccc---------------eeeCCCC-CCEEEEEECCCCCEEEE
Confidence            2            244444444444 66778887665322               2355665 67899999 89999999


Q ss_pred             ecCCCCCChhHHH
Q 008510          212 LPYNRSDNPYDAA  224 (563)
Q Consensus       212 ~~~n~~~~~w~~a  224 (563)
                      ++.|+.+++|+..
T Consensus       246 ~s~Dg~i~iWd~~  258 (304)
T 2ynn_A          246 GSEDGTLKIWNSS  258 (304)
T ss_dssp             EETTSCEEEEETT
T ss_pred             EcCCCeEEEEECC
Confidence            9999999999975

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.90  E-value=1.4e-22  Score=212.33  Aligned_cols=204  Identities=22%  Similarity=0.292  Sum_probs=162.8

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA   76 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v   76 (563)
                      ++.++++||.||+|++||+ +++++.++.+|.+.|.+++|+|+| .+++|+.|++|++||  ++++++++. |...|+++
T Consensus       119 ~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v  198 (410)
T 1vyh_C          119 VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSV  198 (410)
T ss_dssp             SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEE
Confidence            4689999999999999999 899999999999999999999999 999999999999999  778888887 88999999


Q ss_pred             EEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccccc--------ceeEEeeccCCceEEEeCCCCceeeec-cc-
Q 008510           77 KFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL--------SQYKLCRKKVGGLKLEDLPGLEALQIP-GT-  145 (563)
Q Consensus        77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v--------~~~~~~~~~~~~i~~~d~~~~~~l~~~-g~-  145 (563)
                      +|+|+|+ +++|+.|++|++||++++++...  +..+...+        ....+++..++.|++||+...+..... ++ 
T Consensus       199 ~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~  276 (410)
T 1vyh_C          199 SIMPNGDHIVSASRDKTIKMWEVQTGYCVKT--FTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR  276 (410)
T ss_dssp             EECSSSSEEEEEETTSEEEEEETTTCCEEEE--EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred             EEeCCCCEEEEEeCCCeEEEEECCCCcEEEE--EeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCC
Confidence            9999998 99999999999999999875432  33333322        245667888999999999876543322 22 


Q ss_pred             ---------CC--------------------CeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccC
Q 008510          146 ---------NA--------------------GQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYD  196 (563)
Q Consensus       146 ---------~d--------------------g~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d  196 (563)
                               ++                    |.+.+..+.| +.+.+||...+...               ..+.||. +
T Consensus       277 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D-~~i~iwd~~~~~~~---------------~~~~~h~-~  339 (410)
T 1vyh_C          277 HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD-KTIKMWDVSTGMCL---------------MTLVGHD-N  339 (410)
T ss_dssp             SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETT-SEEEEEETTTTEEE---------------EEEECCS-S
T ss_pred             ceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCC-CeEEEEECCCCceE---------------EEEECCC-C
Confidence                     22                    3344444444 66778887665321               2345665 7


Q ss_pred             cEEEEEc-CCCCeeeeecCCCCCChhHHH
Q 008510          197 YVFDVDI-GDGEPTRKLPYNRSDNPYDAA  224 (563)
Q Consensus       197 ~v~~vd~-~dg~~~~~~~~n~~~~~w~~a  224 (563)
                      .|.++.+ ++|..+++++.|+.+++|+..
T Consensus       340 ~v~~v~~~~~g~~l~s~s~D~~i~vwd~~  368 (410)
T 1vyh_C          340 WVRGVLFHSGGKFILSCADDKTLRVWDYK  368 (410)
T ss_dssp             CEEEEEECSSSSCEEEEETTTEEEEECCT
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence            8999999 899999999999999999874

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.90  E-value=2.5e-22  Score=210.34  Aligned_cols=203  Identities=23%  Similarity=0.374  Sum_probs=160.7

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA   76 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v   76 (563)
                      +|++|++||.|++|++||+ +++++.++.+|...|.+++|+|++ .+++|+.|++|++||  ++.++.++. |...|.++
T Consensus       161 ~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~  240 (410)
T 1vyh_C          161 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV  240 (410)
T ss_dssp             TSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEE
Confidence            4789999999999999999 789999999999999999999999 999999999999999  888999998 88899999


Q ss_pred             EEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccccc----------------------------ceeEEeeccCC
Q 008510           77 KFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL----------------------------SQYKLCRKKVG  127 (563)
Q Consensus        77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v----------------------------~~~~~~~~~~~  127 (563)
                      +++|+|. +++|+.|++|++||+++++....  +..+...+                            ..+.+++..++
T Consensus       241 ~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~  318 (410)
T 1vyh_C          241 RPNQDGTLIASCSNDQTVRVWVVATKECKAE--LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK  318 (410)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCEEEE--ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS
T ss_pred             EECCCCCEEEEEcCCCeEEEEECCCCceeeE--ecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCC
Confidence            9999999 89999999999999998864322  22222111                            23567788899


Q ss_pred             ceEEEeCCCCceeeec-cc----------CCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccC
Q 008510          128 GLKLEDLPGLEALQIP-GT----------NAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYD  196 (563)
Q Consensus       128 ~i~~~d~~~~~~l~~~-g~----------~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d  196 (563)
                      .|++||+.....+... +|          ++|.+.+..+.| +.+++||...+.               ....+.+|. +
T Consensus       319 ~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D-~~i~vwd~~~~~---------------~~~~~~~h~-~  381 (410)
T 1vyh_C          319 TIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADD-KTLRVWDYKNKR---------------CMKTLNAHE-H  381 (410)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETT-TEEEEECCTTSC---------------CCEEEECCS-S
T ss_pred             eEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCC-CeEEEEECCCCc---------------eEEEEcCCC-C
Confidence            9999999876554332 44          444444433333 555667654331               233456666 7


Q ss_pred             cEEEEEc-CCCCeeeeecCCCCCChhHH
Q 008510          197 YVFDVDI-GDGEPTRKLPYNRSDNPYDA  223 (563)
Q Consensus       197 ~v~~vd~-~dg~~~~~~~~n~~~~~w~~  223 (563)
                      .|.++.+ +++..+++++.|+++++|++
T Consensus       382 ~v~~l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          382 FVTSLDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             CEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence            8999999 89999999999999999975

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.89  E-value=1.6e-21  Score=196.93  Aligned_cols=211  Identities=20%  Similarity=0.287  Sum_probs=157.4

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe-cCCcEEEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE-HPGCVWDAK   77 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~-h~~~V~~v~   77 (563)
                      +|+++++||.|++||+||+ +++++.++.+|...|.+++|+|++ .+++|+.|++|++|| .++++.++. |...|.+++
T Consensus        76 dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~  155 (319)
T 3frx_A           76 DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVR  155 (319)
T ss_dssp             TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEE
T ss_pred             CCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEE
Confidence            5789999999999999999 899999999999999999999999 999999999999999 888888887 889999999


Q ss_pred             EccC------Cc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCCceeee
Q 008510           78 FLEN------GD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLEALQI  142 (563)
Q Consensus        78 ~~p~------g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~~l~~  142 (563)
                      +.|+      +. +++|+.|+.|++||+++.+...  .+..|...+.        ...+++..++.|++||+...+.+..
T Consensus       156 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~--~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~  233 (319)
T 3frx_A          156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA--DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT  233 (319)
T ss_dssp             ECCC------CCEEEEEETTSCEEEEETTTTEEEE--EECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEE
T ss_pred             EccCCCCCCCccEEEEEeCCCEEEEEECCcchhhe--eecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence            9984      33 8999999999999999876432  2333433332        4556778899999999987765443


Q ss_pred             c----------ccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeee
Q 008510          143 P----------GTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRK  211 (563)
Q Consensus       143 ~----------g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~  211 (563)
                      .          .+++|........++  +.+|+...+....  .+...      ...+.......+.++.| +||+.+++
T Consensus       234 ~~~~~~v~~~~~sp~~~~la~~~~~~--i~v~~~~~~~~~~--~~~~~------~~~~~~~~~~~v~~~~~spdg~~l~s  303 (319)
T 3frx_A          234 LSAQDEVFSLAFSPNRYWLAAATATG--IKVFSLDPQYLVD--DLRPE------FAGYSKAAEPHAVSLAWSADGQTLFA  303 (319)
T ss_dssp             EECCSCEEEEEECSSSSEEEEEETTE--EEEEEETTEEEEE--EECCC------CTTCCGGGCCCEEEEEECTTSSEEEE
T ss_pred             ecCCCcEEEEEEcCCCCEEEEEcCCC--cEEEEeCcCeeee--ccCcc------ccccccCcCcceeEEEECCCCCEEEE
Confidence            3          344454444433332  3455544332111  11110      00011122367899999 99999999


Q ss_pred             ecCCCCCChhHHH
Q 008510          212 LPYNRSDNPYDAA  224 (563)
Q Consensus       212 ~~~n~~~~~w~~a  224 (563)
                      ++.|+.+++|++.
T Consensus       304 g~~Dg~i~vWd~~  316 (319)
T 3frx_A          304 GYTDNVIRVWQVM  316 (319)
T ss_dssp             EETTSCEEEEEEE
T ss_pred             eecCceEEEEEEe
Confidence            9999999999874

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.88  E-value=3e-21  Score=196.66  Aligned_cols=202  Identities=18%  Similarity=0.269  Sum_probs=160.5

Q ss_pred             CCCEEEEEECCCcEEEEcC-CC----ceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEe-cCCcE
Q 008510            2 PGVGIISASHDCTIRLWAL-TG----QVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIE-HPGCV   73 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g----~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V   73 (563)
                      +|+++++|+.|++|++|++ ++    +....+.+|.+.|.++.|++++.+++++.|++|++||  +++++.++. |.+.|
T Consensus       108 ~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v  187 (340)
T 1got_B          108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDV  187 (340)
T ss_dssp             TSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             CCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCce
Confidence            5789999999999999998 33    4667889999999999999988999999999999999  788888888 99999


Q ss_pred             EEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCCceee---
Q 008510           74 WDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLEALQ---  141 (563)
Q Consensus        74 ~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~~l~---  141 (563)
                      ++++|+|++. +++|+.|++|++||+++++...  .+..+...+.        ...+++..++.|++||++....+.   
T Consensus       188 ~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~--~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~  265 (340)
T 1got_B          188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ--TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS  265 (340)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTCSEEE--EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEECCCCeeEE--EEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEc
Confidence            9999999998 8999999999999999887443  2333333332        455677889999999998654332   


Q ss_pred             ----------ecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeee
Q 008510          142 ----------IPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTR  210 (563)
Q Consensus       142 ----------~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~  210 (563)
                                ...+++|.+.+..+.+ +.+++||...+.               ....+.||. +.|.++.+ ++|..++
T Consensus       266 ~~~~~~~v~~~~~s~~g~~l~~g~~d-~~i~vwd~~~~~---------------~~~~~~~h~-~~v~~~~~s~dg~~l~  328 (340)
T 1got_B          266 HDNIICGITSVSFSKSGRLLLAGYDD-FNCNVWDALKAD---------------RAGVLAGHD-NRVSCLGVTDDGMAVA  328 (340)
T ss_dssp             CTTCCSCEEEEEECTTSSEEEEEETT-SEEEEEETTTCC---------------EEEEEECCS-SCEEEEEECTTSSCEE
T ss_pred             cCCcccceEEEEECCCCCEEEEECCC-CeEEEEEcccCc---------------EeeEeecCC-CcEEEEEEcCCCCEEE
Confidence                      2245666666655554 556788865432               122356666 77999999 9999999


Q ss_pred             eecCCCCCChhH
Q 008510          211 KLPYNRSDNPYD  222 (563)
Q Consensus       211 ~~~~n~~~~~w~  222 (563)
                      +++.|+.+++|+
T Consensus       329 s~s~D~~i~iWd  340 (340)
T 1got_B          329 TGSWDSFLKIWN  340 (340)
T ss_dssp             EEETTSCEEEEC
T ss_pred             EEcCCccEEecC
Confidence            999999999995

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.88  E-value=3.9e-21  Score=194.49  Aligned_cols=203  Identities=18%  Similarity=0.262  Sum_probs=160.9

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA   76 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v   76 (563)
                      ++..+++||.|++|++||+ +++++..+.+|...+++++|+|++ .+++|+.|++|++|+  +++....+. |...|.++
T Consensus        91 ~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~  170 (321)
T 3ow8_A           91 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSI  170 (321)
T ss_dssp             SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEE
T ss_pred             CCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEE
Confidence            4678999999999999999 899999999999999999999999 999999999999999  777777777 77799999


Q ss_pred             EEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCCceeee-----
Q 008510           77 KFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLEALQI-----  142 (563)
Q Consensus        77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~~l~~-----  142 (563)
                      +|+|+|+ +++|+.||.|++||+++++...  .+..+...+.        ...+++..++.|++||++.......     
T Consensus       171 ~~spdg~~lasg~~dg~i~iwd~~~~~~~~--~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~  248 (321)
T 3ow8_A          171 AYSPDGKYLASGAIDGIINIFDIATGKLLH--TLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA  248 (321)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEE--EECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCS
T ss_pred             EECCCCCEEEEEcCCCeEEEEECCCCcEEE--EEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCC
Confidence            9999999 9999999999999999987543  2333433332        4556778899999999987654432     


Q ss_pred             ------cccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCC
Q 008510          143 ------PGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYN  215 (563)
Q Consensus       143 ------~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n  215 (563)
                            ..+++|...+..+.| +.+.+||..++...               ..+.+|. +.|.++.+ ++|..+++.+.|
T Consensus       249 ~~v~~~~~sp~~~~l~s~s~D-~~v~iwd~~~~~~~---------------~~~~~h~-~~v~~v~~s~~g~~l~s~~~d  311 (321)
T 3ow8_A          249 SWVLNVAFCPDDTHFVSSSSD-KSVKVWDVGTRTCV---------------HTFFDHQ-DQVWGVKYNGNGSKIVSVGDD  311 (321)
T ss_dssp             SCEEEEEECTTSSEEEEEETT-SCEEEEETTTTEEE---------------EEECCCS-SCEEEEEECTTSSEEEEEETT
T ss_pred             CceEEEEECCCCCEEEEEeCC-CcEEEEeCCCCEEE---------------EEEcCCC-CcEEEEEECCCCCEEEEEeCC
Confidence                  234455554444443 45567776554321               2345555 67999999 899999999999


Q ss_pred             CCCChhHH
Q 008510          216 RSDNPYDA  223 (563)
Q Consensus       216 ~~~~~w~~  223 (563)
                      +.+++|++
T Consensus       312 ~~i~vwd~  319 (321)
T 3ow8_A          312 QEIHIYDC  319 (321)
T ss_dssp             CCEEEEEC
T ss_pred             CeEEEEeC
Confidence            99999985

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.88  E-value=2.1e-21  Score=197.06  Aligned_cols=212  Identities=17%  Similarity=0.198  Sum_probs=145.5

Q ss_pred             CCCEEEEEECCCcEEEEcCC--------CceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-C--C---ceeEE
Q 008510            2 PGVGIISASHDCTIRLWALT--------GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-D--G---VCVQS   66 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~~--------g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~--~---~~~~~   66 (563)
                      +|++|++|+.|++|++|+..        ++++.++.+|...|++++|+|+| .+++|+.|++|++|| .  +   +++..
T Consensus        69 ~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~  148 (330)
T 2hes_X           69 HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISV  148 (330)
T ss_dssp             TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEE
T ss_pred             CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEE
Confidence            47899999999999999982        35678899999999999999999 999999999999999 2  2   45667


Q ss_pred             Ee-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc----------eeEEeeccCCceEEEeC
Q 008510           67 IE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS----------QYKLCRKKVGGLKLEDL  134 (563)
Q Consensus        67 l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~----------~~~~~~~~~~~i~~~d~  134 (563)
                      +. |...|.+++|+|++. |++|+.|++|++||.+++.......+..|...+.          ...+++..|+.|++||+
T Consensus       149 ~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~  228 (330)
T 2hes_X          149 LQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKY  228 (330)
T ss_dssp             ECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEE
T ss_pred             eccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEe
Confidence            76 889999999999998 9999999999999988764333334444444332          24567788999999998


Q ss_pred             CCCc--------eeee-cc-cCCCeEEE--------EecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccC
Q 008510          135 PGLE--------ALQI-PG-TNAGQTKV--------VREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYD  196 (563)
Q Consensus       135 ~~~~--------~l~~-~g-~~dg~~~l--------~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d  196 (563)
                      .+..        .... .+ +......+        +..+.++.+.+|+...+.|.....            ...+|...
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~------------~~~~h~~~  296 (330)
T 2hes_X          229 MGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAK------------RALCHGVY  296 (330)
T ss_dssp             EEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEE------------ESCTTTTS
T ss_pred             cCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEec------------cccccccc
Confidence            5431        1111 12 33222222        222233556678776665543211            12344422


Q ss_pred             cEEEEEc-C--CCCeeeeecCCCCCChhHHHH
Q 008510          197 YVFDVDI-G--DGEPTRKLPYNRSDNPYDAAD  225 (563)
Q Consensus       197 ~v~~vd~-~--dg~~~~~~~~n~~~~~w~~a~  225 (563)
                      .|.++.+ +  +|..+++.+.|+.+++|++..
T Consensus       297 ~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          297 EINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             CEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             eEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            6888988 5  688899999999999998753

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.88  E-value=8.2e-22  Score=202.55  Aligned_cols=207  Identities=18%  Similarity=0.241  Sum_probs=148.8

Q ss_pred             CCEEEEEECCCcEEEEcC-CCcee----EEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcE
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVL----MEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCV   73 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i----~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V   73 (563)
                      +..+++|+.||+|++||+ ++++.    ....+|.+.|++++|+|+| .+++|+.|++|++||  +++++..+. |...|
T Consensus       105 d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v  184 (357)
T 4g56_B          105 EKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEV  184 (357)
T ss_dssp             TTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             CCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCE
Confidence            456888999999999999 66543    3455899999999999999 999999999999999  788888888 89999


Q ss_pred             EEEEEccCCc--EEEEeCCCcEEEEEcCCCceeceeeeccccccc---------ceeEEeeccCCceEEEeCCCCceeee
Q 008510           74 WDAKFLENGD--IVTACSDGVTRIWTVHSDKVADSLELEAYASEL---------SQYKLCRKKVGGLKLEDLPGLEALQI  142 (563)
Q Consensus        74 ~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v---------~~~~~~~~~~~~i~~~d~~~~~~l~~  142 (563)
                      ++++|+|+++  +++++.||+|++||+++++.........+...+         ..+..++..++.|++||+...+.+..
T Consensus       185 ~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~  264 (357)
T 4g56_B          185 NCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT  264 (357)
T ss_dssp             EEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE
T ss_pred             EEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEE
Confidence            9999999875  899999999999999988754433332222211         23455677889999999987655433


Q ss_pred             c-ccCCCeEEEEec----------CCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-C-CCCee
Q 008510          143 P-GTNAGQTKVVRE----------GDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-G-DGEPT  209 (563)
Q Consensus       143 ~-g~~dg~~~l~~~----------~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~-dg~~~  209 (563)
                      . ++......+..+          +.++.+++||...+...                ...||. +.|.++.| | |+..+
T Consensus       265 ~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~----------------~~~~H~-~~V~~vafsP~d~~~l  327 (357)
T 4g56_B          265 SAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVF----------------RDLSHR-DFVTGVAWSPLDHSKF  327 (357)
T ss_dssp             ECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEE----------------EECCCS-SCEEEEEECSSSTTEE
T ss_pred             EeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEe----------------EECCCC-CCEEEEEEeCCCCCEE
Confidence            2 333333333332          22344566766554321                123454 78999999 5 78899


Q ss_pred             eeecCCCCCChhHHHHH
Q 008510          210 RKLPYNRSDNPYDAADK  226 (563)
Q Consensus       210 ~~~~~n~~~~~w~~a~~  226 (563)
                      ++.++|+++++|++.+.
T Consensus       328 ~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          328 TTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             EEEETTSCEEEEECC--
T ss_pred             EEEcCCCeEEEEECCCC
Confidence            99999999999998543

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.88  E-value=5.1e-21  Score=195.16  Aligned_cols=220  Identities=17%  Similarity=0.208  Sum_probs=155.1

Q ss_pred             CCCEEEEEECCCcEEEEcC-C-------CceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-c
Q 008510            2 PGVGIISASHDCTIRLWAL-T-------GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-H   69 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~-------g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h   69 (563)
                      +|.+|+|||.|++|++||+ +       +.+...+.+|...|.+++|+|++ .+++|+.|++|++||  ++++++.+. |
T Consensus        38 d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h  117 (343)
T 2xzm_R           38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGH  117 (343)
T ss_dssp             CCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECC
T ss_pred             CCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence            5789999999999999998 3       34677899999999999999999 999999999999999  788888888 9


Q ss_pred             CCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccccc------------------ceeEEeeccCCceE
Q 008510           70 PGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL------------------SQYKLCRKKVGGLK  130 (563)
Q Consensus        70 ~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v------------------~~~~~~~~~~~~i~  130 (563)
                      ...|++++|+|+|+ +++|+.|++|++||+.............+...+                  ....+++..++.|+
T Consensus       118 ~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~  197 (343)
T 2xzm_R          118 QSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLK  197 (343)
T ss_dssp             CSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEE
T ss_pred             CCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEE
Confidence            99999999999998 999999999999999754322111111121111                  13566777889999


Q ss_pred             EEeCCCCc----------eeeecccCCCeEEEEecCCCeEEEEEecccce----------------EEEeCcEeeCCCCC
Q 008510          131 LEDLPGLE----------ALQIPGTNAGQTKVVREGDNGVAYSWDMKEQK----------------WDKLGEVVDGPDDG  184 (563)
Q Consensus       131 ~~d~~~~~----------~l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~----------------w~~~g~v~~~~~~~  184 (563)
                      +||.....          +.....+++|.+.+..+.| +.+++||.....                |.+-+.++....++
T Consensus       198 iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~d-g~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~d~  276 (343)
T 2xzm_R          198 VWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKD-KKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQ  276 (343)
T ss_dssp             EEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETT-CEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEEESS
T ss_pred             EEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCC-CeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEECCC
Confidence            99954322          1222355677666655555 566788862110                11111111111111


Q ss_pred             CCce-------------eec-----------CcccCcEEEEEc-CCCCeeeeecCCCCCChhHHH
Q 008510          185 MNRP-------------ILD-----------GIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAA  224 (563)
Q Consensus       185 ~~~~-------------~~~-----------g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a  224 (563)
                       ..+             .+.           |+. +.|.++.| ++|..++.+..|+.+++|++.
T Consensus       277 -~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~  339 (343)
T 2xzm_R          277 -GVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKN-PQCTSLAWNALGKKLFAGFTDGVIRTFSFE  339 (343)
T ss_dssp             -CEEEEESSSCCSCSEEECCCCSGGGBTTBCCSC-CCEEEEEECSSSCCEEEEETTSEEEEEEEE
T ss_pred             -CEEEEEeCCCCCCceEEeecCcchhhhhhcCCC-CceEEEEECCCCCeEEEecCCceEEEEEEE
Confidence             111             111           333 56889999 899999999999999999763

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.88  E-value=4.1e-21  Score=191.87  Aligned_cols=217  Identities=17%  Similarity=0.225  Sum_probs=150.7

Q ss_pred             CCCEEEEEECCCcEEEEcCC---CceeEEEecCCCcEEEEEEcCC--C-eEEEEeCCCcEEEEc--CC--ceeEEEe-cC
Q 008510            2 PGVGIISASHDCTIRLWALT---GQVLMEMVGHTAIVYSIDSHAS--G-LIVSGSEDRFAKIWK--DG--VCVQSIE-HP   70 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~~---g~~i~~l~gH~~~V~~v~~~p~--g-~l~s~s~D~tvriWd--~~--~~~~~l~-h~   70 (563)
                      +|++|++||.|++|++|++.   ++++.++.+|.+.|++++|+|+  | .++|||.|++|++||  ++  ..+..+. |.
T Consensus        20 ~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~   99 (297)
T 2pm7_B           20 YGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHS   99 (297)
T ss_dssp             TSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCS
T ss_pred             CCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCC
Confidence            58999999999999999983   4688999999999999999863  6 899999999999999  44  3556666 88


Q ss_pred             CcEEEEEEccC--Cc-EEEEeCCCcEEEEEcCCCceeceeeeccccccc---------------------ceeEEeeccC
Q 008510           71 GCVWDAKFLEN--GD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL---------------------SQYKLCRKKV  126 (563)
Q Consensus        71 ~~V~~v~~~p~--g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v---------------------~~~~~~~~~~  126 (563)
                      ..|++++|+|+  |. +++|+.|++|++||++++.......+..+...+                     ....+++..|
T Consensus       100 ~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D  179 (297)
T 2pm7_B          100 ASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD  179 (297)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETT
T ss_pred             CceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCC
Confidence            89999999997  76 899999999999999876422222233333221                     2356778889


Q ss_pred             CceEEEeCCCCc----ee-eecccCCCeEEEEecCCC---eE--EEEEecccceEEEeCcEeeCCCCCCCceee--cCcc
Q 008510          127 GGLKLEDLPGLE----AL-QIPGTNAGQTKVVREGDN---GV--AYSWDMKEQKWDKLGEVVDGPDDGMNRPIL--DGIQ  194 (563)
Q Consensus       127 ~~i~~~d~~~~~----~l-~~~g~~dg~~~l~~~~~~---~~--~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~--~g~~  194 (563)
                      +.|++||+....    .. ...+|.+....+.+++++   ..  ...+|.....|+....    .. ......+  .++.
T Consensus       180 ~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~----~~-~~~~~~~~~~~~~  254 (297)
T 2pm7_B          180 NLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE----QG-PWKKTLLKEEKFP  254 (297)
T ss_dssp             SCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST----TS-CCEEEESSSSCCS
T ss_pred             CcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCC----CC-ccceeeeecccCC
Confidence            999999987644    22 122555444444444431   11  1222333333332110    00 0001112  2333


Q ss_pred             cCcEEEEEc-CCCCeeeeecCCCCCChhHHH
Q 008510          195 YDYVFDVDI-GDGEPTRKLPYNRSDNPYDAA  224 (563)
Q Consensus       195 ~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a  224 (563)
                       +.|+++.| ++|..++....|+.+++|+..
T Consensus       255 -~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          255 -DVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             -SCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             -CcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence             67999999 999999999999999999864

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.87  E-value=2.2e-21  Score=198.18  Aligned_cols=217  Identities=15%  Similarity=0.130  Sum_probs=152.6

Q ss_pred             CCCEEEEEECCCcEEEEcC-CC--ceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CC---ceeEEEe-cCC
Q 008510            2 PGVGIISASHDCTIRLWAL-TG--QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DG---VCVQSIE-HPG   71 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g--~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~---~~~~~l~-h~~   71 (563)
                      +|++|++|+.|++|++|+. .+  +++.++.+|...|.+++|+|+| .+++|+.|++|++||  .+   .++..+. |..
T Consensus        72 ~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~  151 (345)
T 3fm0_A           72 CGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQ  151 (345)
T ss_dssp             TSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCS
T ss_pred             CCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCC
Confidence            5789999999999999998 44  5788999999999999999999 999999999999999  33   3455666 888


Q ss_pred             cEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCCc----
Q 008510           72 CVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLE----  138 (563)
Q Consensus        72 ~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~----  138 (563)
                      .|.+++|+|+++ +++|+.|++|++||.++++......+..|...+.        ...+++..|+.|++|+.....    
T Consensus       152 ~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~  231 (345)
T 3fm0_A          152 DVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQG  231 (345)
T ss_dssp             CEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTC
T ss_pred             CeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCcc
Confidence            999999999998 9999999999999998876444445555555443        345677889999999962111    


Q ss_pred             -----------------------eeeecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCccc
Q 008510          139 -----------------------ALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQY  195 (563)
Q Consensus       139 -----------------------~l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~  195 (563)
                                             +.....++++...+..+.+ ..+.+|+...+.-.......      .......||. 
T Consensus       232 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d-~~i~vw~~~~~~~~~~~~~~------~~~~~~~~h~-  303 (345)
T 3fm0_A          232 VACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGD-DAIRVFQEDPNSDPQQPTFS------LTAHLHQAHS-  303 (345)
T ss_dssp             CCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETT-SCEEEEEECTTSCTTSCCEE------EEEEETTSSS-
T ss_pred             ceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCC-CeEEEEEeCCCCCcceeeEE------EEeeeccccc-
Confidence                                   1111123333333333333 33445553221100000000      0011234665 


Q ss_pred             CcEEEEEc-CCC-CeeeeecCCCCCChhHHHHH
Q 008510          196 DYVFDVDI-GDG-EPTRKLPYNRSDNPYDAADK  226 (563)
Q Consensus       196 d~v~~vd~-~dg-~~~~~~~~n~~~~~w~~a~~  226 (563)
                      +.|.++.| +++ ..+++.+.|+.+++|++..+
T Consensus       304 ~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~  336 (345)
T 3fm0_A          304 QDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRP  336 (345)
T ss_dssp             SCEEEEEECSSSTTEEEEEETTSCEEEEEECC-
T ss_pred             CcEeEeEEeCCCceEEEEcCCCCcEEEEEecCC
Confidence            77999999 776 47899999999999998643

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.87  E-value=9.7e-21  Score=194.23  Aligned_cols=202  Identities=19%  Similarity=0.256  Sum_probs=137.3

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeE------------------------------------------------EEecCC
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLM------------------------------------------------EMVGHT   32 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~------------------------------------------------~l~gH~   32 (563)
                      +|++|+|||.||+|++||. +++...                                                .+.+|.
T Consensus        75 d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~  154 (354)
T 2pbi_B           75 DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHT  154 (354)
T ss_dssp             TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECS
T ss_pred             CCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccC
Confidence            4678899999999999987 554433                                                344577


Q ss_pred             CcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEEEcc--CCc-EEEEeCCCcEEEEEcCCCceec
Q 008510           33 AIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLE--NGD-IVTACSDGVTRIWTVHSDKVAD  105 (563)
Q Consensus        33 ~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~~~p--~g~-i~sgs~Dg~Irvwd~~~~~~~~  105 (563)
                      ..|.+++|+|++ .+++|+.|++|++||  ++++++++. |...|.+++|+|  +|. +++|+.||+|++||+++++...
T Consensus       155 ~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~  234 (354)
T 2pbi_B          155 NYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQ  234 (354)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEE
T ss_pred             CcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence            777778888777 778888888888888  677777777 777888888876  345 7888888888888887776432


Q ss_pred             eeeecccccccc--------eeEEeeccCCceEEEeCCCCceee-------------ecccCCCeEEEEecCCCeEEEEE
Q 008510          106 SLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLEALQ-------------IPGTNAGQTKVVREGDNGVAYSW  164 (563)
Q Consensus       106 ~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~~l~-------------~~g~~dg~~~l~~~~~~~~~~~w  164 (563)
                        .+..|...+.        ...+++..|+.|++||++....+.             ...+++|.+.+....+ +.+++|
T Consensus       235 --~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d-~~i~vw  311 (354)
T 2pbi_B          235 --AFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYND-YTINVW  311 (354)
T ss_dssp             --EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETT-SCEEEE
T ss_pred             --EecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECC-CcEEEE
Confidence              2233333222        344566677888888876543221             1234455555444444 445566


Q ss_pred             ecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhH
Q 008510          165 DMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYD  222 (563)
Q Consensus       165 d~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~  222 (563)
                      |...+.               ....+.||. +.|.++.+ +||..+++++.|+.+++|+
T Consensus       312 d~~~~~---------------~~~~l~~h~-~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          312 DVLKGS---------------RVSILFGHE-NRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             ETTTCS---------------EEEEECCCS-SCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             ECCCCc---------------eEEEEECCC-CcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            654432               112355665 78999999 9999999999999999984

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.87  E-value=5.8e-21  Score=193.19  Aligned_cols=205  Identities=20%  Similarity=0.294  Sum_probs=159.2

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCc--eeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQ--VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVW   74 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~--~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~   74 (563)
                      ++++|+|||.|++||+|++ +++  +...+.||...|.+++++|++ .+++++.|++|++||  +++++..+. |+..++
T Consensus        47 ~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~  126 (321)
T 3ow8_A           47 NSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAW  126 (321)
T ss_dssp             --CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCC
T ss_pred             CCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEE
Confidence            3678999999999999999 554  456789999999999999999 999999999999999  788888888 778999


Q ss_pred             EEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccc--------cceeEEeeccCCceEEEeCCCCceeeec--
Q 008510           75 DAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASE--------LSQYKLCRKKVGGLKLEDLPGLEALQIP--  143 (563)
Q Consensus        75 ~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~~i~~~d~~~~~~l~~~--  143 (563)
                      +++|+|+|+ +++|+.||.|++||+++++....  +..+...        -....+++..++.|++||+.+.+.+...  
T Consensus       127 ~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~--~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~  204 (321)
T 3ow8_A          127 TLAFSPDSQYLATGTHVGKVNIFGVESGKKEYS--LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEG  204 (321)
T ss_dssp             CEEECTTSSEEEEECTTSEEEEEETTTCSEEEE--EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             EEEECCCCCEEEEEcCCCcEEEEEcCCCceeEE--ecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcc
Confidence            999999999 99999999999999998874322  2222211        2245667788999999999876554322  


Q ss_pred             ---------ccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeec
Q 008510          144 ---------GTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLP  213 (563)
Q Consensus       144 ---------g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~  213 (563)
                               .+++|.+.+..+.+ +.+.+||...+..               ...+.||. +.|.++.+ ++|..+++.+
T Consensus       205 h~~~v~~l~~spd~~~l~s~s~d-g~i~iwd~~~~~~---------------~~~~~~h~-~~v~~~~~sp~~~~l~s~s  267 (321)
T 3ow8_A          205 HAMPIRSLTFSPDSQLLVTASDD-GYIKIYDVQHANL---------------AGTLSGHA-SWVLNVAFCPDDTHFVSSS  267 (321)
T ss_dssp             CSSCCCEEEECTTSCEEEEECTT-SCEEEEETTTCCE---------------EEEECCCS-SCEEEEEECTTSSEEEEEE
T ss_pred             cCCceeEEEEcCCCCEEEEEcCC-CeEEEEECCCcce---------------eEEEcCCC-CceEEEEECCCCCEEEEEe
Confidence                     44556555544444 5567787654422               12355665 77999999 8999999999


Q ss_pred             CCCCCChhHHHH
Q 008510          214 YNRSDNPYDAAD  225 (563)
Q Consensus       214 ~n~~~~~w~~a~  225 (563)
                      .|+++++|++..
T Consensus       268 ~D~~v~iwd~~~  279 (321)
T 3ow8_A          268 SDKSVKVWDVGT  279 (321)
T ss_dssp             TTSCEEEEETTT
T ss_pred             CCCcEEEEeCCC
Confidence            999999999853

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.87  E-value=1.2e-20  Score=196.31  Aligned_cols=206  Identities=21%  Similarity=0.334  Sum_probs=156.7

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAK   77 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~   77 (563)
                      +|++|++|+.|++|++||+ +++++..+.+|...|++++|+|++ .+++|+.|++|++||  ++++...+.+...+.+++
T Consensus       134 dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~  213 (393)
T 1erj_A          134 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVA  213 (393)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEE
Confidence            5789999999999999999 889999999999999999999999 999999999999999  788888888888999999


Q ss_pred             Ecc-CCc-EEEEeCCCcEEEEEcCCCceeceee-----ecccccccc--------eeEEeeccCCceEEEeCCCCce---
Q 008510           78 FLE-NGD-IVTACSDGVTRIWTVHSDKVADSLE-----LEAYASELS--------QYKLCRKKVGGLKLEDLPGLEA---  139 (563)
Q Consensus        78 ~~p-~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~-----~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~~---  139 (563)
                      |+| +|+ +++|+.|+.|++||.++++......     ...|...+.        ...+++..++.|++||+.....   
T Consensus       214 ~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~  293 (393)
T 1erj_A          214 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSD  293 (393)
T ss_dssp             ECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------
T ss_pred             EECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCccc
Confidence            999 788 9999999999999999887443221     122333222        4556778899999999865321   


Q ss_pred             --------------------eeecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEE
Q 008510          140 --------------------LQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVF  199 (563)
Q Consensus       140 --------------------l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~  199 (563)
                                          .....+++|.+.+..+.| +.+++||..++..               ...+.||. +.|.
T Consensus       294 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D-~~v~iwd~~~~~~---------------~~~l~~h~-~~v~  356 (393)
T 1erj_A          294 SKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD-RGVLFWDKKSGNP---------------LLMLQGHR-NSVI  356 (393)
T ss_dssp             -------CEEEEEECCSSCEEEEEECGGGCEEEEEETT-SEEEEEETTTCCE---------------EEEEECCS-SCEE
T ss_pred             ccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCC-CeEEEEECCCCeE---------------EEEECCCC-CCEE
Confidence                                111233445554444444 5567888665431               22355665 6789


Q ss_pred             EEEc-C------CCCeeeeecCCCCCChhHHH
Q 008510          200 DVDI-G------DGEPTRKLPYNRSDNPYDAA  224 (563)
Q Consensus       200 ~vd~-~------dg~~~~~~~~n~~~~~w~~a  224 (563)
                      ++.+ +      ++..+++++.|+.+++|+..
T Consensus       357 ~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~  388 (393)
T 1erj_A          357 SVAVANGSSLGPEYNVFATGSGDCKARIWKYK  388 (393)
T ss_dssp             EEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence            9987 3      57789999999999999863

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.87  E-value=8.1e-21  Score=191.54  Aligned_cols=211  Identities=16%  Similarity=0.187  Sum_probs=148.5

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCc--eeEEEecCCCcEEEEEEcC--CC-eEEEEeCCCcEEEEc--CC--ceeEEEe-cC
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQ--VLMEMVGHTAIVYSIDSHA--SG-LIVSGSEDRFAKIWK--DG--VCVQSIE-HP   70 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~--~i~~l~gH~~~V~~v~~~p--~g-~l~s~s~D~tvriWd--~~--~~~~~l~-h~   70 (563)
                      +|++|++||.|++|++||+ +++  ++.++.+|.+.|++++|+|  ++ .|+|||.|++|++||  ++  .++..+. |.
T Consensus        24 ~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~  103 (316)
T 3bg1_A           24 YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHD  103 (316)
T ss_dssp             GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCS
T ss_pred             CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCC
Confidence            4789999999999999999 553  5788999999999999986  36 899999999999999  44  3556666 88


Q ss_pred             CcEEEEEEccC--Cc-EEEEeCCCcEEEEEcCCCcee-ceeeeccccccc-------------------------ceeEE
Q 008510           71 GCVWDAKFLEN--GD-IVTACSDGVTRIWTVHSDKVA-DSLELEAYASEL-------------------------SQYKL  121 (563)
Q Consensus        71 ~~V~~v~~~p~--g~-i~sgs~Dg~Irvwd~~~~~~~-~~~~~~~~~~~v-------------------------~~~~~  121 (563)
                      ..|++++|+|+  |. +++|+.|++|++||++.+... ....+..+...+                         ....+
T Consensus       104 ~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  183 (316)
T 3bg1_A          104 SSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFA  183 (316)
T ss_dssp             SCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEE
T ss_pred             CceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEE
Confidence            99999999997  66 999999999999999876311 111122222111                         13567


Q ss_pred             eeccCCceEEEeCCCCc---eee-ecccCCCeEEEEecC-------------CCeEEEEEecccceEEEeCcEeeCCCCC
Q 008510          122 CRKKVGGLKLEDLPGLE---ALQ-IPGTNAGQTKVVREG-------------DNGVAYSWDMKEQKWDKLGEVVDGPDDG  184 (563)
Q Consensus       122 ~~~~~~~i~~~d~~~~~---~l~-~~g~~dg~~~l~~~~-------------~~~~~~~wd~~~~~w~~~g~v~~~~~~~  184 (563)
                      ++..|+.|++||+....   .+. ..+|.+....+..++             .++.+.+|+.....           ...
T Consensus       184 sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~-----------~~~  252 (316)
T 3bg1_A          184 SGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDAS-----------SNT  252 (316)
T ss_dssp             CCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTT-----------CCC
T ss_pred             EecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCcc-----------ccc
Confidence            78889999999997442   221 224444333333332             23445566543210           000


Q ss_pred             CCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHH
Q 008510          185 MNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAA  224 (563)
Q Consensus       185 ~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a  224 (563)
                      .....+.++. +.|+++.| ++|..+++...|+.+++|+..
T Consensus       253 ~~~~~~~~~~-~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          253 WSPKLLHKFN-DVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             CBCCEEEECS-SCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             hhhhhhhcCC-CcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            0112233443 78999999 999999999999999999863

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.86  E-value=1.6e-20  Score=188.20  Aligned_cols=204  Identities=18%  Similarity=0.268  Sum_probs=146.0

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CC-ceeEEEe-cCCcEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DG-VCVQSIE-HPGCVWD   75 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~-~~~~~l~-h~~~V~~   75 (563)
                      ++++|++|+.|++|++||+ +++++.++.+|.+.|++++|+|++ .+++|+.|++|++||  ++ .+.+.+. |...|.+
T Consensus        66 ~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~  145 (304)
T 2ynn_A           66 RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMC  145 (304)
T ss_dssp             GGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEE
T ss_pred             CCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEE
Confidence            4688999999999999999 899999999999999999999999 999999999999999  44 4556676 8899999


Q ss_pred             EEEcc-CCc-EEEEeCCCcEEEEEcCCCceeceeeeccccc----------ccceeEEeeccCCceEEEeCCCCceeeec
Q 008510           76 AKFLE-NGD-IVTACSDGVTRIWTVHSDKVADSLELEAYAS----------ELSQYKLCRKKVGGLKLEDLPGLEALQIP  143 (563)
Q Consensus        76 v~~~p-~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~----------~v~~~~~~~~~~~~i~~~d~~~~~~l~~~  143 (563)
                      ++|+| ++. +++|+.|++|++||++++....... ..+..          .-..+.+++..++.|++||+...+.+...
T Consensus       146 v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~  224 (304)
T 2ynn_A          146 VAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL  224 (304)
T ss_dssp             EEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEE-CCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             EEECCCCCCEEEEEeCCCeEEEEECCCCCccceec-cCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee
Confidence            99999 556 9999999999999998765321111 11111          11246778889999999999877654432


Q ss_pred             -cc----------CCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCe-ee
Q 008510          144 -GT----------NAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEP-TR  210 (563)
Q Consensus       144 -g~----------~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~-~~  210 (563)
                       +|          +++...+..+.| +.+.+||..++...               ..+.++. +.++++.+ ++|.. .+
T Consensus       225 ~~h~~~v~~~~~~p~~~~l~s~s~D-g~i~iWd~~~~~~~---------------~~~~~~~-~~~~~~~~~~~~~~~~~  287 (304)
T 2ynn_A          225 EGHMSNVSFAVFHPTLPIIISGSED-GTLKIWNSSTYKVE---------------KTLNVGL-ERSWCIATHPTGRKNYI  287 (304)
T ss_dssp             ECCSSCEEEEEECSSSSEEEEEETT-SCEEEEETTTCCEE---------------EEECCSS-SSEEEEEECTTCGGGCE
T ss_pred             CCCCCCEEEEEECCCCCEEEEEcCC-CeEEEEECCCCcee---------------eeccCCC-ccEEEEEECCCCCceEE
Confidence             44          444433333333 44567776554322               1233333 56888886 66643 34


Q ss_pred             eecCCCCCChhHH
Q 008510          211 KLPYNRSDNPYDA  223 (563)
Q Consensus       211 ~~~~n~~~~~w~~  223 (563)
                      ...++.+..+|.+
T Consensus       288 asg~~~g~~~~~~  300 (304)
T 2ynn_A          288 ASGFDNGFTVLSL  300 (304)
T ss_dssp             EEEETTEEEEEEC
T ss_pred             EEecCCceEEEEe
Confidence            5555655555544

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.86  E-value=5.7e-20  Score=184.27  Aligned_cols=204  Identities=25%  Similarity=0.455  Sum_probs=158.9

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA   76 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v   76 (563)
                      +|++|++|+.|++|++||+ +++++.++.+|...|.+++|+|++ .+++|+.|++|++||  +++++..+. |...|.++
T Consensus        76 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~  155 (312)
T 4ery_A           76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV  155 (312)
T ss_dssp             TSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred             CCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEE
Confidence            5789999999999999999 899999999999999999999999 999999999999999  788888888 88899999


Q ss_pred             EEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccc--------cceeEEeeccCCceEEEeCCCCceeeec-cc-
Q 008510           77 KFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASE--------LSQYKLCRKKVGGLKLEDLPGLEALQIP-GT-  145 (563)
Q Consensus        77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~~i~~~d~~~~~~l~~~-g~-  145 (563)
                      +|+|+|. +++|+.||.|++||+++++...... ......        -....+++..++.|++||+...+.+... ++ 
T Consensus       156 ~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  234 (312)
T 4ery_A          156 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK  234 (312)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-CSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSC
T ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCceeeEEe-ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecC
Confidence            9999998 8999999999999999887443211 111111        2245667788899999999877654332 22 


Q ss_pred             ------------CCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeee
Q 008510          146 ------------NAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKL  212 (563)
Q Consensus       146 ------------~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~  212 (563)
                                  .++.+ ++..+.++.+++||...+..               ...+.||. +.|.++.+ +++..+++.
T Consensus       235 ~~~~~~~~~~~~~~~~~-l~sg~~dg~i~vwd~~~~~~---------------~~~~~~h~-~~v~~~~~~p~~~~l~s~  297 (312)
T 4ery_A          235 NEKYCIFANFSVTGGKW-IVSGSEDNLVYIWNLQTKEI---------------VQKLQGHT-DVVISTACHPTENIIASA  297 (312)
T ss_dssp             CSSSCCCEEEECSSSCE-EEECCTTSCEEEEETTTCCE---------------EEEECCCS-SCEEEEEECSSSSEEEEE
T ss_pred             CceEEEEEEEEeCCCcE-EEEECCCCEEEEEECCCchh---------------hhhhhccC-CcEEEEeecCcCCceEEE
Confidence                        23333 33344446677888765421               22356776 78999999 888888877


Q ss_pred             c--CCCCCChhHH
Q 008510          213 P--YNRSDNPYDA  223 (563)
Q Consensus       213 ~--~n~~~~~w~~  223 (563)
                      .  .|+.+++|+.
T Consensus       298 ~~~~d~~i~~W~~  310 (312)
T 4ery_A          298 ALENDKTIKLWKS  310 (312)
T ss_dssp             ECTTTCCEEEEEC
T ss_pred             EccCCccEEEecC
Confidence            6  5888999874

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.86  E-value=1.1e-19  Score=182.21  Aligned_cols=206  Identities=21%  Similarity=0.333  Sum_probs=158.5

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA   76 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v   76 (563)
                      +|++|++|+.||+|++|+. ++++...+.+|...|.+++|+|++ .+++|+.|++|++||  +++++..+. |...|+++
T Consensus        34 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~  113 (312)
T 4ery_A           34 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC  113 (312)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             CCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEE
Confidence            5789999999999999999 899999999999999999999999 999999999999999  788888888 88899999


Q ss_pred             EEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccccc--------ceeEEeeccCCceEEEeCCCCceeee-----
Q 008510           77 KFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL--------SQYKLCRKKVGGLKLEDLPGLEALQI-----  142 (563)
Q Consensus        77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v--------~~~~~~~~~~~~i~~~d~~~~~~l~~-----  142 (563)
                      +|+|++. +++|+.|+.|++||+++++....  +..+...+        ....+++..++.|++||++....+..     
T Consensus       114 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~  191 (312)
T 4ery_A          114 NFNPQSNLIVSGSFDESVRIWDVKTGKCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD  191 (312)
T ss_dssp             EECSSSSEEEEEETTSCEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSS
T ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCEEEEE--ecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccC
Confidence            9999998 99999999999999998874432  22333222        24556778899999999987654322     


Q ss_pred             -------cccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcc---cCcEEEEEcCCCCeeeee
Q 008510          143 -------PGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQ---YDYVFDVDIGDGEPTRKL  212 (563)
Q Consensus       143 -------~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~---~d~v~~vd~~dg~~~~~~  212 (563)
                             ..+++|.+.+..+.+ +.+.+||...+....               .+.++.   +.....+..+++..++++
T Consensus       192 ~~~~~~~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~l~sg  255 (312)
T 4ery_A          192 NPPVSFVKFSPNGKYILAATLD-NTLKLWDYSKGKCLK---------------TYTGHKNEKYCIFANFSVTGGKWIVSG  255 (312)
T ss_dssp             CCCEEEEEECTTSSEEEEEETT-TEEEEEETTTTEEEE---------------EECSSCCSSSCCCEEEECSSSCEEEEC
T ss_pred             CCceEEEEECCCCCEEEEEcCC-CeEEEEECCCCcEEE---------------EEEecCCceEEEEEEEEeCCCcEEEEE
Confidence                   245566666665555 567788877664321               122222   111223344678889999


Q ss_pred             cCCCCCChhHHHH
Q 008510          213 PYNRSDNPYDAAD  225 (563)
Q Consensus       213 ~~n~~~~~w~~a~  225 (563)
                      ..|+.+++|++..
T Consensus       256 ~~dg~i~vwd~~~  268 (312)
T 4ery_A          256 SEDNLVYIWNLQT  268 (312)
T ss_dssp             CTTSCEEEEETTT
T ss_pred             CCCCEEEEEECCC
Confidence            9999999999753

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.85  E-value=5.8e-20  Score=185.49  Aligned_cols=201  Identities=20%  Similarity=0.257  Sum_probs=150.8

Q ss_pred             CCEEEEEECCCcEEEEcCC------CceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCc
Q 008510            3 GVGIISASHDCTIRLWALT------GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGC   72 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~~------g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~   72 (563)
                      +++|+|||.|++|++|++.      +.++.++.+|...|.+++|+|+| .+++|+.|++||+||  ++++++.+. |...
T Consensus        30 ~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~  109 (319)
T 3frx_A           30 PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSD  109 (319)
T ss_dssp             TTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC
T ss_pred             ccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCc
Confidence            4789999999999999982      34678899999999999999999 999999999999999  888888888 9999


Q ss_pred             EEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------------eeEEeeccCCceEEEeCCCC
Q 008510           73 VWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------------QYKLCRKKVGGLKLEDLPGL  137 (563)
Q Consensus        73 V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------------~~~~~~~~~~~i~~~d~~~~  137 (563)
                      |++++|+|++. +++|+.|++|++||++.....   .+..+...+.              ...+++..++.|++||+...
T Consensus       110 v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~---~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~  186 (319)
T 3frx_A          110 VMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA---TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF  186 (319)
T ss_dssp             EEEEEECTTSCEEEEEETTSCEEEEETTSCEEE---EECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTT
T ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEE---EEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc
Confidence            99999999998 999999999999999765322   2222322211              24667888999999999865


Q ss_pred             ceee-----------ecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CC
Q 008510          138 EALQ-----------IPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GD  205 (563)
Q Consensus       138 ~~l~-----------~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~d  205 (563)
                      ....           ...+++|...+..+.| +.+.+||...+....               .+.++  +.|.++.+ ++
T Consensus       187 ~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d-g~i~iwd~~~~~~~~---------------~~~~~--~~v~~~~~sp~  248 (319)
T 3frx_A          187 QIEADFIGHNSNINTLTASPDGTLIASAGKD-GEIMLWNLAAKKAMY---------------TLSAQ--DEVFSLAFSPN  248 (319)
T ss_dssp             EEEEEECCCCSCEEEEEECTTSSEEEEEETT-CEEEEEETTTTEEEE---------------EEECC--SCEEEEEECSS
T ss_pred             hhheeecCCCCcEEEEEEcCCCCEEEEEeCC-CeEEEEECCCCcEEE---------------EecCC--CcEEEEEEcCC
Confidence            4332           2245666655555544 567788876653221               12222  45899999 88


Q ss_pred             CCeeeeecCCCCCChhHHHH
Q 008510          206 GEPTRKLPYNRSDNPYDAAD  225 (563)
Q Consensus       206 g~~~~~~~~n~~~~~w~~a~  225 (563)
                      |..++.. .+.++++|+...
T Consensus       249 ~~~la~~-~~~~i~v~~~~~  267 (319)
T 3frx_A          249 RYWLAAA-TATGIKVFSLDP  267 (319)
T ss_dssp             SSEEEEE-ETTEEEEEEETT
T ss_pred             CCEEEEE-cCCCcEEEEeCc
Confidence            8766554 455678887643

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.85  E-value=2.6e-20  Score=192.82  Aligned_cols=58  Identities=24%  Similarity=0.284  Sum_probs=45.0

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK   59 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd   59 (563)
                      +|++|+|||.||+|++||. +++++.++.+|...|.+++|+|+| .+++|+.|+++++|+
T Consensus        77 ~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~  136 (380)
T 3iz6_a           77 EKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFN  136 (380)
T ss_dssp             TSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEE
Confidence            5788999999999999999 788888888887777777777766 555555555555555

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.85  E-value=7.9e-20  Score=201.43  Aligned_cols=100  Identities=28%  Similarity=0.414  Sum_probs=93.5

Q ss_pred             EEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEE--------ecCCc
Q 008510            5 GIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSI--------EHPGC   72 (563)
Q Consensus         5 ~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l--------~h~~~   72 (563)
                      .|++||.|++|++||. +++++.++.+|...|++++|+|+| .++||+.|++|++||  +++++..+        .|.+.
T Consensus       162 ~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~  241 (611)
T 1nr0_A          162 RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGS  241 (611)
T ss_dssp             EEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSC
T ss_pred             EEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCC
Confidence            6999999999999999 789999999999999999999999 999999999999999  78888877        48889


Q ss_pred             EEEEEEccCCc-EEEEeCCCcEEEEEcCCCcee
Q 008510           73 VWDAKFLENGD-IVTACSDGVTRIWTVHSDKVA  104 (563)
Q Consensus        73 V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~  104 (563)
                      |++++|+|+|+ +++|+.|++|++||+++++..
T Consensus       242 V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~  274 (611)
T 1nr0_A          242 VFGLTWSPDGTKIASASADKTIKIWNVATLKVE  274 (611)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEeCCCCcee
Confidence            99999999998 999999999999999987654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.85  E-value=6.1e-20  Score=191.48  Aligned_cols=209  Identities=16%  Similarity=0.197  Sum_probs=160.4

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA   76 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v   76 (563)
                      +|++|++|+.||+|++||+ ++++...+.+|.+.|++++|+|++ .+++|+.|++|++||  ++++++.+. |...|+++
T Consensus       108 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  187 (420)
T 3vl1_A          108 QMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDI  187 (420)
T ss_dssp             SSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEE
T ss_pred             CCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEE
Confidence            5789999999999999999 788888888999999999999999 999999999999999  788888888 99999999


Q ss_pred             EEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecc-cc-----------------------------cccceeEEeecc
Q 008510           77 KFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEA-YA-----------------------------SELSQYKLCRKK  125 (563)
Q Consensus        77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~-~~-----------------------------~~v~~~~~~~~~  125 (563)
                      +|+|+|. +++|+.||.|++||+++++......... +.                             ..-....+++..
T Consensus       188 ~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  267 (420)
T 3vl1_A          188 AIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV  267 (420)
T ss_dssp             EEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET
T ss_pred             EEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcC
Confidence            9999998 9999999999999999887543322110 00                             012246677888


Q ss_pred             CCceEEEeCCCCceeeec------------ccCCCe-EEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecC
Q 008510          126 VGGLKLEDLPGLEALQIP------------GTNAGQ-TKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDG  192 (563)
Q Consensus       126 ~~~i~~~d~~~~~~l~~~------------g~~dg~-~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g  192 (563)
                      ++.|++||++....+...            .+++|. +.+..+ .++.+++||...+.              .....+.+
T Consensus       268 dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~-~dg~i~vwd~~~~~--------------~~~~~~~~  332 (420)
T 3vl1_A          268 SGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGY-ENGMLAQWDLRSPE--------------CPVGEFLI  332 (420)
T ss_dssp             TSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEE-TTSEEEEEETTCTT--------------SCSEEEEE
T ss_pred             CCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEe-CCCeEEEEEcCCCc--------------Cchhhhhc
Confidence            999999999876543322            344554 333333 33556677765431              01234555


Q ss_pred             cccCcEEEEEcCCCCeeeeecCCCCCChhHHHH
Q 008510          193 IQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAAD  225 (563)
Q Consensus       193 ~~~d~v~~vd~~dg~~~~~~~~n~~~~~w~~a~  225 (563)
                      ++...|..+.+++|..+++.+.|+.+++|++..
T Consensus       333 ~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~  365 (420)
T 3vl1_A          333 NEGTPINNVYFAAGALFVSSGFDTSIKLDIISD  365 (420)
T ss_dssp             STTSCEEEEEEETTEEEEEETTTEEEEEEEECC
T ss_pred             cCCCCceEEEeCCCCEEEEecCCccEEEEeccC
Confidence            455678888778888999999999999999753

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.85  E-value=5.7e-20  Score=187.70  Aligned_cols=185  Identities=18%  Similarity=0.307  Sum_probs=140.0

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCcee--EE-EecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CC--ceeEEEe-cCC
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVL--ME-MVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DG--VCVQSIE-HPG   71 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i--~~-l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~--~~~~~l~-h~~   71 (563)
                      +|++|++||.|++|++|++ .+...  .. ..+|...|.+++|+|+| .+++|+.|+++++|+  .+  +++.++. |..
T Consensus        27 ~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~  106 (345)
T 3fm0_A           27 AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHEN  106 (345)
T ss_dssp             TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSS
T ss_pred             CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCC
Confidence            5789999999999999999 55432  22 36899999999999999 999999999999999  33  4567777 999


Q ss_pred             cEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceeeecccCCCeE
Q 008510           72 CVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQT  150 (563)
Q Consensus        72 ~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg~~  150 (563)
                      .|++++|+|+|+ +++|+.|++|++||++++.....                      +.........+.....+++|.+
T Consensus       107 ~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~----------------------~~~~~~h~~~v~~~~~~p~~~~  164 (345)
T 3fm0_A          107 EVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYEC----------------------VSVLNSHTQDVKHVVWHPSQEL  164 (345)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEE----------------------EEEECCCCSCEEEEEECSSSSC
T ss_pred             CceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEE----------------------EEEecCcCCCeEEEEECCCCCE
Confidence            999999999998 99999999999999987642110                      1111112222333345666766


Q ss_pred             EEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHH
Q 008510          151 KVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDA  223 (563)
Q Consensus       151 ~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~  223 (563)
                      .+..+.+ +.+.+|+...+.|....             .+.||. +.|.++.+ ++|+.+++.+.|+++++|+.
T Consensus       165 l~s~s~d-~~i~~w~~~~~~~~~~~-------------~~~~h~-~~v~~l~~sp~g~~l~s~s~D~~v~iW~~  223 (345)
T 3fm0_A          165 LASASYD-DTVKLYREEEDDWVCCA-------------TLEGHE-STVWSLAFDPSGQRLASCSDDRTVRIWRQ  223 (345)
T ss_dssp             EEEEETT-SCEEEEEEETTEEEEEE-------------EECCCS-SCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             EEEEeCC-CcEEEEEecCCCEEEEE-------------EecCCC-CceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence            6666555 45567887666554322             245555 67999999 99999999999999999985

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.84  E-value=1.1e-19  Score=189.00  Aligned_cols=217  Identities=18%  Similarity=0.319  Sum_probs=155.8

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCC------------------cEEEEEEcCCC-eEEEEeCCCcEEEEc--
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTA------------------IVYSIDSHASG-LIVSGSEDRFAKIWK--   59 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~------------------~V~~v~~~p~g-~l~s~s~D~tvriWd--   59 (563)
                      +|++|++|+ |+++++|++ +|+.+..+.+|..                  .|.+++|+|+| .+++|+.|++|++||  
T Consensus        75 dg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~  153 (393)
T 1erj_A           75 DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIE  153 (393)
T ss_dssp             TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             CCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence            578899876 789999999 8998888876643                  49999999999 999999999999999  


Q ss_pred             CCceeEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecc------cccccceeEEeeccCCceEE
Q 008510           60 DGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEA------YASELSQYKLCRKKVGGLKL  131 (563)
Q Consensus        60 ~~~~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~i~~  131 (563)
                      +++++..+. |...|++++|+|+|+ +++|+.|++|++||+++++.........      +...-....+++..++.|++
T Consensus       154 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~i  233 (393)
T 1erj_A          154 NRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRV  233 (393)
T ss_dssp             TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEE
T ss_pred             CCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEE
Confidence            777888887 999999999999998 9999999999999999987543322111      11112345667888999999


Q ss_pred             EeCCCCceee------------------ecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCc
Q 008510          132 EDLPGLEALQ------------------IPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGI  193 (563)
Q Consensus       132 ~d~~~~~~l~------------------~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~  193 (563)
                      ||+.....+.                  ...+++|...+..+.| +.+.+||.........  .. ....+.....+.||
T Consensus       234 wd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d-~~v~~wd~~~~~~~~~--~~-~~~~~~~~~~~~~h  309 (393)
T 1erj_A          234 WDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD-RSVKLWNLQNANNKSD--SK-TPNSGTCEVTYIGH  309 (393)
T ss_dssp             EETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT-SEEEEEEC------------------CEEEEEECC
T ss_pred             EECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCC-CEEEEEECCCCCCccc--cc-CCCCCcceEEEecc
Confidence            9987654332                  2244566555554444 5567787654321100  00 00011123356777


Q ss_pred             ccCcEEEEEc-CCCCeeeeecCCCCCChhHHH
Q 008510          194 QYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAA  224 (563)
Q Consensus       194 ~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a  224 (563)
                      . ++|.++.+ ++|..+++++.|+.+.+|+..
T Consensus       310 ~-~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~  340 (393)
T 1erj_A          310 K-DFVLSVATTQNDEYILSGSKDRGVLFWDKK  340 (393)
T ss_dssp             S-SCEEEEEECGGGCEEEEEETTSEEEEEETT
T ss_pred             c-CcEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence            6 88999999 899999999999999999974

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.84  E-value=2.3e-19  Score=182.69  Aligned_cols=206  Identities=17%  Similarity=0.200  Sum_probs=157.0

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CC----ceeEEEe-cCCc
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DG----VCVQSIE-HPGC   72 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~----~~~~~l~-h~~~   72 (563)
                      +|++|++||.||+|++||. +++++..+.+|...|.+++|+|+| .+++|+.|++|++|+  ++    .....+. |.+.
T Consensus        66 d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~  145 (340)
T 1got_B           66 DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGY  145 (340)
T ss_dssp             TSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSC
T ss_pred             CCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCcc
Confidence            5789999999999999999 899999999999999999999999 999999999999999  32    2445555 8899


Q ss_pred             EEEEEEccCCcEEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCCceeee--
Q 008510           73 VWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLEALQI--  142 (563)
Q Consensus        73 V~~v~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~~l~~--  142 (563)
                      |.++.|++++.+++++.|++|++||+++++...  .+..+...+.        ...+++..++.|++||++.......  
T Consensus       146 v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~  223 (340)
T 1got_B          146 LSCCRFLDDNQIVTSSGDTTCALWDIETGQQTT--TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT  223 (340)
T ss_dssp             EEEEEEEETTEEEEEETTSCEEEEETTTTEEEE--EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC
T ss_pred             EEEEEECCCCcEEEEECCCcEEEEECCCCcEEE--EEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEc
Confidence            999999999899999999999999999987443  3333433332        3556778899999999987654432  


Q ss_pred             ---------cccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeee
Q 008510          143 ---------PGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKL  212 (563)
Q Consensus       143 ---------~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~  212 (563)
                               ..+++|...+..+.| +.+.+||...+.....   ..          ..++ ...|.++.+ ++|..++.+
T Consensus       224 ~h~~~v~~v~~~p~~~~l~s~s~d-~~v~iwd~~~~~~~~~---~~----------~~~~-~~~v~~~~~s~~g~~l~~g  288 (340)
T 1got_B          224 GHESDINAICFFPNGNAFATGSDD-ATCRLFDLRADQELMT---YS----------HDNI-ICGITSVSFSKSGRLLLAG  288 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETT-SCEEEEETTTTEEEEE---EC----------CTTC-CSCEEEEEECTTSSEEEEE
T ss_pred             CCcCCEEEEEEcCCCCEEEEEcCC-CcEEEEECCCCcEEEE---Ec----------cCCc-ccceEEEEECCCCCEEEEE
Confidence                     234555555544444 4556787665432111   00          0111 134889999 999999999


Q ss_pred             cCCCCCChhHHH
Q 008510          213 PYNRSDNPYDAA  224 (563)
Q Consensus       213 ~~n~~~~~w~~a  224 (563)
                      ..|+.+++|++.
T Consensus       289 ~~d~~i~vwd~~  300 (340)
T 1got_B          289 YDDFNCNVWDAL  300 (340)
T ss_dssp             ETTSEEEEEETT
T ss_pred             CCCCeEEEEEcc
Confidence            999999999974

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.84  E-value=1.9e-19  Score=184.03  Aligned_cols=154  Identities=16%  Similarity=0.128  Sum_probs=124.1

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCceeEEEe---cCCcE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIE---HPGCV   73 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~~~l~---h~~~V   73 (563)
                      +|++|++|+.|++|++||+ +++++.++.+|.+.|++++|+|++  .++||+.|++|++||  ++++...+.   |...+
T Consensus       138 dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~  217 (344)
T 4gqb_B          138 SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLP  217 (344)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccc
Confidence            5889999999999999999 899999999999999999999987  689999999999999  778887775   44579


Q ss_pred             EEEEEccCC-c-EEEEeCCCcEEEEEcCCCceeceeeecccccccc---------eeEEeeccCCceEEEeCCCCceeee
Q 008510           74 WDAKFLENG-D-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS---------QYKLCRKKVGGLKLEDLPGLEALQI  142 (563)
Q Consensus        74 ~~v~~~p~g-~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~---------~~~~~~~~~~~i~~~d~~~~~~l~~  142 (563)
                      .+++|+|++ . +++|+.||+|++||+++++...  .+..|...+.         .+.+++..|+.|++||+...+.+..
T Consensus       218 ~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~--~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~  295 (344)
T 4gqb_B          218 TSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVL--SSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS  295 (344)
T ss_dssp             EEEEECSSCTTEEEEEETTSEEEEEESCC--CCE--EEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEE
T ss_pred             eeeeecCCCCcceEEeccCCcEEEEECCCCcEEE--EEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEE
Confidence            999999965 4 7899999999999999887443  3344444332         3455677889999999998887766


Q ss_pred             cccCCCeEEEEecCC
Q 008510          143 PGTNAGQTKVVREGD  157 (563)
Q Consensus       143 ~g~~dg~~~l~~~~~  157 (563)
                      .+|.+....+.++++
T Consensus       296 ~~H~~~V~~v~~sp~  310 (344)
T 4gqb_B          296 QAHRDFVRDATWSPL  310 (344)
T ss_dssp             CCCSSCEEEEEECSS
T ss_pred             cCCCCCEEEEEEeCC
Confidence            677766666655544

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.84  E-value=1.1e-19  Score=184.96  Aligned_cols=210  Identities=17%  Similarity=0.205  Sum_probs=159.3

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcC-CC-eEEEEeCCCcEEEEc--CCceeEEE---e-cCCcE
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHA-SG-LIVSGSEDRFAKIWK--DGVCVQSI---E-HPGCV   73 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p-~g-~l~s~s~D~tvriWd--~~~~~~~l---~-h~~~V   73 (563)
                      |.+|++|+.||+|++||+ +++++..+.+|...|.+++|+| ++ .+++|+.|++|++||  +++.+..+   . |...|
T Consensus        85 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v  164 (366)
T 3k26_A           85 HPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEV  164 (366)
T ss_dssp             CEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCE
T ss_pred             CCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCce
Confidence            679999999999999999 8999999999999999999999 77 899999999999999  77888887   3 88899


Q ss_pred             EEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceee--------------------------eccccccc------ceeE
Q 008510           74 WDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLE--------------------------LEAYASEL------SQYK  120 (563)
Q Consensus        74 ~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~--------------------------~~~~~~~v------~~~~  120 (563)
                      .+++|+|+|. +++|+.||.|++||+++++......                          ...+...+      ....
T Consensus       165 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l  244 (366)
T 3k26_A          165 LSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLI  244 (366)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEE
T ss_pred             eEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEE
Confidence            9999999998 9999999999999999875321110                          00122222      3456


Q ss_pred             EeeccCCceEEEeCCCCce--------------ee-----------ecccCC--CeEEEEecCCCeEEEEEecccceEEE
Q 008510          121 LCRKKVGGLKLEDLPGLEA--------------LQ-----------IPGTNA--GQTKVVREGDNGVAYSWDMKEQKWDK  173 (563)
Q Consensus       121 ~~~~~~~~i~~~d~~~~~~--------------l~-----------~~g~~d--g~~~l~~~~~~~~~~~wd~~~~~w~~  173 (563)
                      +++..++.|++||+.....              +.           ...+++  |.+.+..+.+ +.+++|+...+... 
T Consensus       245 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d-g~i~vwd~~~~~~~-  322 (366)
T 3k26_A          245 LSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQV-GKLYVWDLEVEDPH-  322 (366)
T ss_dssp             EEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTT-SCEEEEECCSSSGG-
T ss_pred             EEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecC-CcEEEEECCCCCCc-
Confidence            6778899999999876532              11           123445  7666666555 56778887654210 


Q ss_pred             eCcEeeCCCCCCCceeecCcc-cCcEEEEEc-CCCCeeeeecCCCCCChhHHH
Q 008510          174 LGEVVDGPDDGMNRPILDGIQ-YDYVFDVDI-GDGEPTRKLPYNRSDNPYDAA  224 (563)
Q Consensus       174 ~g~v~~~~~~~~~~~~~~g~~-~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a  224 (563)
                       ..         ....+.++. ...|.++.+ ++|+.+++...|+.+.+|++.
T Consensus       323 -~~---------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          323 -KA---------KCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             -GC---------EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             -cc---------cceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence             00         111344442 367999999 899999999999999999863

>2k89_A PLA2P, PLAP, phospholipase A-2-activating protein; ubiquitin binding, WD repeat, protein binding; NMR {Homo sapiens} PDB: 2k8a_A 2k8b_B 2k8c_B

Probab=99.84  E-value=3.7e-21  Score=145.54  Aligned_cols=70  Identities=36%  Similarity=0.722  Sum_probs=66.9

Q ss_pred             CCceeecCcccCcEEEEEcCCCCeeeeecCCCCCChhHHHHHHHHhcCCCcccHHHHHHHHHHhcCCCCc
Q 008510          185 MNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADKWLLKENLPFSYRQQIVEFILQNTGQKDF  254 (563)
Q Consensus       185 ~~~~~~~g~~~d~v~~vd~~dg~~~~~~~~n~~~~~w~~a~~f~~~~~l~~~~~~~v~~fi~~n~~~~~~  254 (563)
                      .++..|+|++|||||+||+++|.+.+++|||.+++||.+|++||++|+||++|++||++||++|++++++
T Consensus         6 ~~k~~~~GkeYDyVFdVdi~dG~~~lkLpyN~~dnP~~aAqkFi~~n~Lp~~yldqI~~FI~~N~~~~~~   75 (80)
T 2k89_A            6 SGKVLYEGKEFDYVFSIDVNEGGPSYKLPYNTSDDPWLTAYNFLQKNDLNPMFLDQVAKFIIDNTKGQML   75 (80)
T ss_dssp             SSCEEETTEEESEEEEECCSSSCSCEEEEECTTSCHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHSTTTT
T ss_pred             CCceeecCccccEEEEEEcCCCCcccccCccCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCccc
Confidence            3677999999999999999999999999999999999999999999999999999999999999998764

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.84  E-value=2.2e-19  Score=195.48  Aligned_cols=200  Identities=25%  Similarity=0.436  Sum_probs=156.1

Q ss_pred             CCCEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe-cCCcEEEEEE
Q 008510            2 PGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE-HPGCVWDAKF   78 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~-h~~~V~~v~~   78 (563)
                      +|+++++|+.|++|++|+.+++++.++.+|...|.+++|+|+| .+++++.|++|++|+ +++.++++. |...|++++|
T Consensus       355 ~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~  434 (577)
T 2ymu_A          355 DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAF  434 (577)
T ss_dssp             TSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEE
T ss_pred             CCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEE
Confidence            5789999999999999999999999999999999999999999 899999999999999 888888888 9999999999


Q ss_pred             ccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCCceeeecc-----
Q 008510           79 LENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLEALQIPG-----  144 (563)
Q Consensus        79 ~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~~l~~~g-----  144 (563)
                      +|++. +++++.|+.|++||..... .  ..+..+...+.        ...+++..++.|++||..+.......+     
T Consensus       435 s~d~~~l~~~~~d~~v~~w~~~~~~-~--~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v  511 (577)
T 2ymu_A          435 SPDDQTIASASDDKTVKLWNRNGQL-L--QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSV  511 (577)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTSCE-E--EEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCE
T ss_pred             CCCCCEEEEEcCCCEEEEEECCCCE-E--EEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCE
Confidence            99998 9999999999999975443 2  12333333332        345567788999999976543322224     


Q ss_pred             -----cCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCC
Q 008510          145 -----TNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSD  218 (563)
Q Consensus       145 -----~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~  218 (563)
                           +++|.+.+..+.| +.+++||.. +      +.         ...+.||. +.|.++.| +||+.+++.+.|+++
T Consensus       512 ~~l~~s~dg~~l~s~~~d-g~v~lwd~~-~------~~---------~~~~~~h~-~~v~~~~fs~dg~~l~s~~~D~~i  573 (577)
T 2ymu_A          512 RGVAFSPDGQTIASASDD-KTVKLWNRN-G------QL---------LQTLTGHS-SSVWGVAFSPDGQTIASASSDKTV  573 (577)
T ss_dssp             EEEEECTTSSCEEEEETT-SEEEEECTT-S------CE---------EEEEECCS-SCEEEEEECTTSSCEEEEETTSCE
T ss_pred             EEEEEcCCCCEEEEEECc-CEEEEEeCC-C------CE---------EEEEcCCC-CCEEEEEEcCCCCEEEEEeCCCEE
Confidence                 4455544444333 445666642 1      11         22356776 78999999 999999999999999


Q ss_pred             ChhH
Q 008510          219 NPYD  222 (563)
Q Consensus       219 ~~w~  222 (563)
                      ++|+
T Consensus       574 ~~Wd  577 (577)
T 2ymu_A          574 KLWN  577 (577)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9995

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.83  E-value=2.9e-19  Score=199.84  Aligned_cols=217  Identities=24%  Similarity=0.238  Sum_probs=157.7

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe-----cCCcE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE-----HPGCV   73 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~-----h~~~V   73 (563)
                      +|++|+|||.||+|++||+ ++++++++.+|...|.+++|+|++ .++|||.|++|++|| .+.+...+.     |...|
T Consensus       441 ~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v  520 (694)
T 3dm0_A          441 DGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWV  520 (694)
T ss_dssp             TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCE
T ss_pred             CCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcE
Confidence            5789999999999999999 899999999999999999999999 999999999999999 666665553     77789


Q ss_pred             EEEEEccCC--c-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCCceeee
Q 008510           74 WDAKFLENG--D-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLEALQI  142 (563)
Q Consensus        74 ~~v~~~p~g--~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~~l~~  142 (563)
                      .+++|+|++  . +++|+.|++|++||+++++...  .+..|...+.        ...+++..++.|++||+.....+..
T Consensus       521 ~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~--~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~  598 (694)
T 3dm0_A          521 SCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRS--TLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYS  598 (694)
T ss_dssp             EEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEE--EECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEEC
T ss_pred             EEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEE--EEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEE
Confidence            999999987  3 8999999999999999877432  3344443332        4556778899999999987655433


Q ss_pred             c----------ccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecC-----cccCcEEEEEc-CCC
Q 008510          143 P----------GTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDG-----IQYDYVFDVDI-GDG  206 (563)
Q Consensus       143 ~----------g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g-----~~~d~v~~vd~-~dg  206 (563)
                      .          .++++.+......  ..+.+||...+..........  ..........|     ..--++.++.+ +||
T Consensus       599 ~~~~~~v~~~~~sp~~~~l~~~~~--~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg  674 (694)
T 3dm0_A          599 LEANSVIHALCFSPNRYWLCAATE--HGIKIWDLESKSIVEDLKVDL--KAEAEKADNSGPAATKRKVIYCTSLNWSADG  674 (694)
T ss_dssp             CBCSSCEEEEEECSSSSEEEEEET--TEEEEEETTTTEEEEEECCCC--C----------------CCCCEEEEEECTTS
T ss_pred             ecCCCcEEEEEEcCCCcEEEEEcC--CCEEEEECCCCCChhhhcccc--ccccccccccccccCCceeEEeeeEEEcCCC
Confidence            2          4455554444332  236789987765432211100  00000000000     11135788999 999


Q ss_pred             CeeeeecCCCCCChhHHH
Q 008510          207 EPTRKLPYNRSDNPYDAA  224 (563)
Q Consensus       207 ~~~~~~~~n~~~~~w~~a  224 (563)
                      +.+++++.|+.+++|++.
T Consensus       675 ~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          675 STLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             SEEEEEETTSEEEEEEC-
T ss_pred             CEEEEEcCCCeEEEEecc
Confidence            999999999999999874

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.83  E-value=1.2e-18  Score=177.38  Aligned_cols=205  Identities=17%  Similarity=0.179  Sum_probs=150.3

Q ss_pred             CCCEEEEEECCCcEEEEcC-C-Ccee-EEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecCCcEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-T-GQVL-MEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWD   75 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~-g~~i-~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~   75 (563)
                      +|++|++|+.||+|++||+ + +..+ ..+.+|...|.+++|+|++ .+++|+.|++|++||  +++++....|...|++
T Consensus        53 ~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~  132 (368)
T 3mmy_A           53 PGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKT  132 (368)
T ss_dssp             SSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEE
T ss_pred             CceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEE
Confidence            4789999999999999999 4 6665 7889999999999999999 999999999999999  6677776669999999


Q ss_pred             EEE--ccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccc---------------------------------------
Q 008510           76 AKF--LENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYA---------------------------------------  113 (563)
Q Consensus        76 v~~--~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~---------------------------------------  113 (563)
                      ++|  +|++. +++|+.||.|++||+++++...........                                       
T Consensus       133 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  212 (368)
T 3mmy_A          133 IHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLK  212 (368)
T ss_dssp             EEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCS
T ss_pred             EEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhcccccc
Confidence            999  88888 999999999999999987643222211000                                       


Q ss_pred             ccc------------ceeEEeeccCCceEEEeCCCCc--------------------------eeeecccCCCeEEEEec
Q 008510          114 SEL------------SQYKLCRKKVGGLKLEDLPGLE--------------------------ALQIPGTNAGQTKVVRE  155 (563)
Q Consensus       114 ~~v------------~~~~~~~~~~~~i~~~d~~~~~--------------------------~l~~~g~~dg~~~l~~~  155 (563)
                      ...            ....+++..++.+++||+....                          +.....+++|.+.+..+
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~  292 (368)
T 3mmy_A          213 HQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG  292 (368)
T ss_dssp             SCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEE
T ss_pred             CCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEc
Confidence            000            0115566677888888886542                          22233566666655555


Q ss_pred             CCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHH
Q 008510          156 GDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDA  223 (563)
Q Consensus       156 ~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~  223 (563)
                      .+ +.+++||..++...               ..+.++. +.|.++.+ ++|..++..+.|...+.|.+
T Consensus       293 ~d-g~i~iwd~~~~~~~---------------~~~~~~~-~~v~~~~~s~~g~~l~~~s~d~~~~~~~~  344 (368)
T 3mmy_A          293 SD-GRFSFWDKDARTKL---------------KTSEQLD-QPISACCFNHNGNIFAYASSYDWSKGHEF  344 (368)
T ss_dssp             TT-SCEEEEETTTTEEE---------------EECCCCS-SCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred             cC-CeEEEEECCCCcEE---------------EEecCCC-CCceEEEECCCCCeEEEEecccccccccc
Confidence            54 44667776654322               1234444 67999999 99999999988776665553

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.82  E-value=4.7e-19  Score=179.72  Aligned_cols=209  Identities=16%  Similarity=0.201  Sum_probs=142.7

Q ss_pred             CCEEEEEECCCcEEEEcC-CC--ceeEEE-ec-CCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-C--------CceeEEE
Q 008510            3 GVGIISASHDCTIRLWAL-TG--QVLMEM-VG-HTAIVYSIDSHASG-LIVSGSEDRFAKIWK-D--------GVCVQSI   67 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g--~~i~~l-~g-H~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~--------~~~~~~l   67 (563)
                      +++|++|+.|++|++|++ .+  +++..+ .+ |...|++++|+|++ .+++|+.|++|+||+ .        .+++..+
T Consensus        24 ~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~  103 (330)
T 2hes_X           24 QGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAII  103 (330)
T ss_dssp             TTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEE
T ss_pred             CCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEE
Confidence            348999999999999999 43  456666 45 99999999999999 999999999999998 2        2355666


Q ss_pred             e-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCC-ce-eceeeecccccccc--------eeEEeeccCCceEEEeCC
Q 008510           68 E-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSD-KV-ADSLELEAYASELS--------QYKLCRKKVGGLKLEDLP  135 (563)
Q Consensus        68 ~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~-~~-~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~  135 (563)
                      . |...|++++|+|+|+ |++|+.|++|++||++.. +. .....+..|...+.        ...+++..|+.|++||..
T Consensus       104 ~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~  183 (330)
T 2hes_X          104 EGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDY  183 (330)
T ss_dssp             C----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEE
T ss_pred             cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence            6 999999999999998 999999999999999543 21 11223344444333        455677889999999986


Q ss_pred             CC--ceee-ecccCCCeEEEEecC-----------CCeEEEEEecccc------eEEEeCcEeeCCCCCCCceeecCccc
Q 008510          136 GL--EALQ-IPGTNAGQTKVVREG-----------DNGVAYSWDMKEQ------KWDKLGEVVDGPDDGMNRPILDGIQY  195 (563)
Q Consensus       136 ~~--~~l~-~~g~~dg~~~l~~~~-----------~~~~~~~wd~~~~------~w~~~g~v~~~~~~~~~~~~~~g~~~  195 (563)
                      ..  +.+. ..+|......+..++           .++.+.+|+...+      .|.             ....+.+.+.
T Consensus       184 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~-------------~~~~~~~~h~  250 (330)
T 2hes_X          184 DDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV-------------CEAILPDVHK  250 (330)
T ss_dssp             TTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEE-------------EEEECCSCCS
T ss_pred             CCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeE-------------Eeeecccccc
Confidence            54  2222 224444333333332           2244455654322      111             1112334233


Q ss_pred             CcEEEEEcCCCCeeeeecCCCCCChhHHH
Q 008510          196 DYVFDVDIGDGEPTRKLPYNRSDNPYDAA  224 (563)
Q Consensus       196 d~v~~vd~~dg~~~~~~~~n~~~~~w~~a  224 (563)
                      +.|+++.+.++..+++.+.|+.+++|+..
T Consensus       251 ~~v~~v~~s~~~~l~s~~~dg~v~iw~~~  279 (330)
T 2hes_X          251 RQVYNVAWGFNGLIASVGADGVLAVYEEV  279 (330)
T ss_dssp             SCEEEEEECTTSCEEEEETTSCEEEEEEE
T ss_pred             cceEEEEEcCCCEEEEEeCCCEEEEEEcC
Confidence            77999999555579999999999999864

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.82  E-value=2.1e-19  Score=184.52  Aligned_cols=205  Identities=15%  Similarity=0.135  Sum_probs=142.9

Q ss_pred             CCCEEEEEEC------CCcEEEEcC-CCc----eeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeE---
Q 008510            2 PGVGIISASH------DCTIRLWAL-TGQ----VLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQ---   65 (563)
Q Consensus         2 ~g~~l~s~s~------DgtIrlWd~-~g~----~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~---   65 (563)
                      ||++|++||.      |++|++|+. ++.    ......+|...|++++|+|++.+++++.|++|+|||  ++++..   
T Consensus        53 DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~  132 (357)
T 4g56_B           53 DGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNK  132 (357)
T ss_dssp             SSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCC
T ss_pred             CCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEe
Confidence            6899999998      788999998 543    334556899999999999999778899999999999  444322   


Q ss_pred             -EE-ecCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc---------eeEEeeccCCceEEEe
Q 008510           66 -SI-EHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS---------QYKLCRKKVGGLKLED  133 (563)
Q Consensus        66 -~l-~h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~---------~~~~~~~~~~~i~~~d  133 (563)
                       .. .|...|++++|+|+|+ +++|+.|+.|++||.++++....  +..+...+.         ...+++..++.|++||
T Consensus       133 ~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~--~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd  210 (357)
T 4g56_B          133 FAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKS--YNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWD  210 (357)
T ss_dssp             EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTCSSCEEEEETTSCEEECC
T ss_pred             eccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEE--EcCCCCCEEEEEEccCCCceeeeeccCCceEEEE
Confidence             22 3888999999999998 99999999999999999875432  333333322         3455677889999999


Q ss_pred             CCCCceeeec-------------ccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEE
Q 008510          134 LPGLEALQIP-------------GTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFD  200 (563)
Q Consensus       134 ~~~~~~l~~~-------------g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~  200 (563)
                      +...+.....             .++++...++....+..+++||...+.               ..+.+.++. +.|.+
T Consensus       211 ~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~---------------~~~~~~~~~-~~v~~  274 (357)
T 4g56_B          211 TRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD---------------SAQTSAVHS-QNITG  274 (357)
T ss_dssp             TTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG---------------GCEEECCCS-SCEEE
T ss_pred             CCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCc---------------EeEEEeccc-eeEEE
Confidence            9766543221             233322222222222344566654331               233466665 67999


Q ss_pred             EEc-CCCC-eeeeecCCCCCChhHHH
Q 008510          201 VDI-GDGE-PTRKLPYNRSDNPYDAA  224 (563)
Q Consensus       201 vd~-~dg~-~~~~~~~n~~~~~w~~a  224 (563)
                      +.| ++|. .+++++.|+++++|++.
T Consensus       275 l~~sp~~~~~lasgs~D~~i~iwd~~  300 (357)
T 4g56_B          275 LAYSYHSSPFLASISEDCTVAVLDAD  300 (357)
T ss_dssp             EEECSSSSCCEEEEETTSCEEEECTT
T ss_pred             EEEcCCCCCEEEEEeCCCEEEEEECC
Confidence            999 7775 57899999999999874

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.82  E-value=4.3e-19  Score=195.53  Aligned_cols=220  Identities=13%  Similarity=0.122  Sum_probs=163.4

Q ss_pred             CCCEEEEEECCCcEEEEcC-CC--ceeEEEecCCCcEEEEEEcCCC-eEEEEeCC----CcEEEEcCCceeEEEe-cCCc
Q 008510            2 PGVGIISASHDCTIRLWAL-TG--QVLMEMVGHTAIVYSIDSHASG-LIVSGSED----RFAKIWKDGVCVQSIE-HPGC   72 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g--~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D----~tvriWd~~~~~~~l~-h~~~   72 (563)
                      +|++|+||+.|++|||||+ ++  .+..++.+|.+.|.+++|+|+| .+++++.|    ++|++||.+++..++. |...
T Consensus        70 dg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~  149 (611)
T 1nr0_A           70 SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARA  149 (611)
T ss_dssp             TSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSC
T ss_pred             CCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCC
Confidence            5899999999999999998 43  3567889999999999999999 88888876    4799999666777777 9999


Q ss_pred             EEEEEEccCCc--EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCCceee-
Q 008510           73 VWDAKFLENGD--IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLEALQ-  141 (563)
Q Consensus        73 V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~~l~-  141 (563)
                      |++++|+|++.  +++|+.|++|++||..+++...  .+..|...+.        ...+++..|+.|++||+...+.+. 
T Consensus       150 v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~--~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~  227 (611)
T 1nr0_A          150 MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS--TFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGV  227 (611)
T ss_dssp             EEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEE--EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             ceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEee--eeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeee
Confidence            99999999985  8999999999999998876432  3445554443        345577889999999986543322 


Q ss_pred             -----------------ecccCCCeEEEEecCCCeEEEEEecccceEEEeCc------------------EeeCCCCC--
Q 008510          142 -----------------IPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGE------------------VVDGPDDG--  184 (563)
Q Consensus       142 -----------------~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~------------------v~~~~~~~--  184 (563)
                                       ...+++|...+..+.| +.+.+||..++.+...-.                  ++....++  
T Consensus       228 ~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D-~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i  306 (611)
T 1nr0_A          228 FEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD-KTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFI  306 (611)
T ss_dssp             CBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT-SEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCE
T ss_pred             eccccccccccCCCEEEEEECCCCCEEEEEeCC-CeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcE
Confidence                             2245566655555544 567789987766543210                  00000000  


Q ss_pred             --------CCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHHH
Q 008510          185 --------MNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAAD  225 (563)
Q Consensus       185 --------~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~  225 (563)
                              .....+.||. +.|.++.+ +||+.+++.+.|+.+++|++..
T Consensus       307 ~~~~~~~~~~~~~~~gh~-~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~  355 (611)
T 1nr0_A          307 NFVNPELGSIDQVRYGHN-KAITALSSSADGKTLFSADAEGHINSWDIST  355 (611)
T ss_dssp             EEEETTTTEEEEEECCCS-SCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             EEEeCCCCCcceEEcCCC-CCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Confidence                    0112345666 78999999 9999999999999999999864

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.82  E-value=2.2e-19  Score=193.56  Aligned_cols=205  Identities=10%  Similarity=0.020  Sum_probs=143.3

Q ss_pred             CCEEEEEECCCcEEEEcC-CCce----eEEEecCCCcEEEEEEcCC------C-eEEEEeCCCcEEEEc--CCce-----
Q 008510            3 GVGIISASHDCTIRLWAL-TGQV----LMEMVGHTAIVYSIDSHAS------G-LIVSGSEDRFAKIWK--DGVC-----   63 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~----i~~l~gH~~~V~~v~~~p~------g-~l~s~s~D~tvriWd--~~~~-----   63 (563)
                      ++.|+|||.|++|+||++ ++++    ..++.+|.+.|++++|+|+      + .|++++.|++|++||  .+.+     
T Consensus       173 ~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~  252 (524)
T 2j04_B          173 LEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF  252 (524)
T ss_dssp             ---------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE
T ss_pred             hhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc
Confidence            456888999999999999 5554    2457788999999999996      4 899999999999999  3322     


Q ss_pred             ------eEEEe-cCCcEEEEEEccCCcEEEEeCCCcEEEEEcCCCceeceeeecccccc---------cc--eeEEeecc
Q 008510           64 ------VQSIE-HPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASE---------LS--QYKLCRKK  125 (563)
Q Consensus        64 ------~~~l~-h~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~---------v~--~~~~~~~~  125 (563)
                            ..++. |...|++++|+|++.|++|+.||+|++||++++... ...+..|...         ..  ...++++.
T Consensus       253 ~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~-~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~  331 (524)
T 2j04_B          253 KMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVP-SFYDQVHDSYILSVSTAYSDFEDTVVSTVAV  331 (524)
T ss_dssp             ECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSC-SEEEECSSSCEEEEEEECCTTSCCEEEEEET
T ss_pred             eeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCc-eEEeecccccEEEEEEEcCCCCCeEEEEecc
Confidence                  23555 888999999998767999999999999999876421 1122222221         11  45677888


Q ss_pred             CCceEEEeCCCCce-------------eeecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecC
Q 008510          126 VGGLKLEDLPGLEA-------------LQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDG  192 (563)
Q Consensus       126 ~~~i~~~d~~~~~~-------------l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g  192 (563)
                      |+.|++||++..+.             ..+..+++|...+..+.+ ..+.+||...+.               ....+.|
T Consensus       332 D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d-~tv~lwd~~~~~---------------~~~~l~g  395 (524)
T 2j04_B          332 DGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGA-SSLRAVPSRAAF---------------AVHPLVS  395 (524)
T ss_dssp             TSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSS-SEEEEEETTCTT---------------CCEEEEE
T ss_pred             CCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCC-CcEEEEECcccc---------------cceeeec
Confidence            99999999965322             123356666664444443 556778765431               1233556


Q ss_pred             cccCcEEEEEc-CCCCeeeeecCCCCCChhHHHH
Q 008510          193 IQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAAD  225 (563)
Q Consensus       193 ~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~  225 (563)
                      |. +.|.+|.+ ++|..+++++.|+++++|++..
T Consensus       396 H~-~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          396 RE-TTITAIGVSRLHPMVLAGSADGSLIITNAAR  428 (524)
T ss_dssp             CS-SCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred             CC-CceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence            65 78999999 9999999999999999999754

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.82  E-value=9.6e-19  Score=179.31  Aligned_cols=156  Identities=25%  Similarity=0.399  Sum_probs=123.5

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcC--CC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHA--SG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVW   74 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p--~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~   74 (563)
                      ++..|++||.|++|++||+ +++++.++.+|...|.+++++|  +| .+++|+.|++|++||  ++++++++. |...|.
T Consensus       165 ~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~  244 (354)
T 2pbi_B          165 SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVN  244 (354)
T ss_dssp             SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeE
Confidence            4678999999999999999 8999999999999999999987  45 899999999999999  888999888 899999


Q ss_pred             EEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccc--------cceeEEeeccCCceEEEeCCCCceeeec-c
Q 008510           75 DAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASE--------LSQYKLCRKKVGGLKLEDLPGLEALQIP-G  144 (563)
Q Consensus        75 ~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~~i~~~d~~~~~~l~~~-g  144 (563)
                      +++|+|+|. +++|+.|++|++||+++++.............        -....+++..++.|++||+.....+... +
T Consensus       245 ~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~  324 (354)
T 2pbi_B          245 SVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFG  324 (354)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECC
T ss_pred             EEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEEC
Confidence            999999998 99999999999999998864432221111111        1245567778899999999766654433 5


Q ss_pred             cCCCeEEEEecCC
Q 008510          145 TNAGQTKVVREGD  157 (563)
Q Consensus       145 ~~dg~~~l~~~~~  157 (563)
                      |.+....+..+++
T Consensus       325 h~~~v~~l~~spd  337 (354)
T 2pbi_B          325 HENRVSTLRVSPD  337 (354)
T ss_dssp             CSSCEEEEEECTT
T ss_pred             CCCcEEEEEECCC
Confidence            5554444444444

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.81  E-value=7.7e-19  Score=179.65  Aligned_cols=210  Identities=16%  Similarity=0.212  Sum_probs=152.3

Q ss_pred             CCCEEEEEECCCcEEEEcC---CCceeEEEecCCCcEEEEEEcCC--C-eEEEEeCCCcEEEEc--CCc--eeEEEe-cC
Q 008510            2 PGVGIISASHDCTIRLWAL---TGQVLMEMVGHTAIVYSIDSHAS--G-LIVSGSEDRFAKIWK--DGV--CVQSIE-HP   70 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~---~g~~i~~l~gH~~~V~~v~~~p~--g-~l~s~s~D~tvriWd--~~~--~~~~l~-h~   70 (563)
                      +|++|++|+.||+|++|++   +++++..+.+|...|++++|+|+  + .+++|+.|++|++||  +++  .+..+. |.
T Consensus        22 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~  101 (379)
T 3jrp_A           22 YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHS  101 (379)
T ss_dssp             SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCS
T ss_pred             CCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCC
Confidence            5789999999999999998   35678889999999999999876  6 999999999999999  554  566666 88


Q ss_pred             CcEEEEEEccC--Cc-EEEEeCCCcEEEEEcCCCceeceeeeccccccc---------------------ceeEEeeccC
Q 008510           71 GCVWDAKFLEN--GD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL---------------------SQYKLCRKKV  126 (563)
Q Consensus        71 ~~V~~v~~~p~--g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v---------------------~~~~~~~~~~  126 (563)
                      ..|++++|+|+  +. +++|+.|+.|++||++++.......+..+...+                     ....+++..+
T Consensus       102 ~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  181 (379)
T 3jrp_A          102 ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD  181 (379)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETT
T ss_pred             cceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCC
Confidence            89999999998  77 999999999999999987543333333333221                     3456677788


Q ss_pred             CceEEEeCCCCcee---------------eecccCC---CeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCce
Q 008510          127 GGLKLEDLPGLEAL---------------QIPGTNA---GQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRP  188 (563)
Q Consensus       127 ~~i~~~d~~~~~~l---------------~~~g~~d---g~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~  188 (563)
                      +.|++||++.....               ....+++   +.+.+..+.+ +.+.+|+...+....            ...
T Consensus       182 g~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~------------~~~  248 (379)
T 3jrp_A          182 NLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD-RTCIIWTQDNEQGPW------------KKT  248 (379)
T ss_dssp             SCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT-SCEEEEEESSTTSCC------------EEE
T ss_pred             CeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCC-CEEEEEeCCCCCccc------------eee
Confidence            99999998654311               1123444   4444444433 344566654431000            001


Q ss_pred             eec-CcccCcEEEEEc-CCCCeeeeecCCCCCChhHHH
Q 008510          189 ILD-GIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAA  224 (563)
Q Consensus       189 ~~~-g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a  224 (563)
                      .+. ....+.|.++.+ ++|..++....|+.+.+|++.
T Consensus       249 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~  286 (379)
T 3jrp_A          249 LLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  286 (379)
T ss_dssp             ESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred             eeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence            111 112367899999 999999999999999999975

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.81  E-value=3.8e-18  Score=173.59  Aligned_cols=225  Identities=19%  Similarity=0.252  Sum_probs=165.6

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAK   77 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~   77 (563)
                      +|++|++|+.||+|++||+ +++++.++.+|...|.+++|+|++ .+++++.|++|++||  +++++..+.+...|.+++
T Consensus        43 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~  122 (369)
T 3zwl_B           43 EGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVE  122 (369)
T ss_dssp             TSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEE
T ss_pred             CCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEE
Confidence            5789999999999999999 899999999999999999999999 999999999999999  788999888989999999


Q ss_pred             EccCCc-EEEEeCC-----CcEEEEEcCCCceece---------eeeccccc--c--------cceeEEeeccCCceEEE
Q 008510           78 FLENGD-IVTACSD-----GVTRIWTVHSDKVADS---------LELEAYAS--E--------LSQYKLCRKKVGGLKLE  132 (563)
Q Consensus        78 ~~p~g~-i~sgs~D-----g~Irvwd~~~~~~~~~---------~~~~~~~~--~--------v~~~~~~~~~~~~i~~~  132 (563)
                      |+|+|. +++++.+     +.|++||++.+.....         ..+..+..  .        -....+++..++.|.+|
T Consensus       123 ~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~  202 (369)
T 3zwl_B          123 FSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKY  202 (369)
T ss_dssp             ECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEE
T ss_pred             EccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEE
Confidence            999999 8899988     9999999987642111         01111111  1        12355667788999999


Q ss_pred             eCCC-Cceee-----------ecccCCCeEEEEecCCCeEEEEEecccceEEEe---------------CcEee-CCCCC
Q 008510          133 DLPG-LEALQ-----------IPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKL---------------GEVVD-GPDDG  184 (563)
Q Consensus       133 d~~~-~~~l~-----------~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~---------------g~v~~-~~~~~  184 (563)
                      |+.. ...+.           ...+++|...+..+.+ +.+++||...+.....               +..+. +...+
T Consensus       203 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  281 (369)
T 3zwl_B          203 DVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRD-TNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQE  281 (369)
T ss_dssp             ETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETT-SEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC
T ss_pred             ECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCC-ceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCC
Confidence            9986 33221           2245566666555554 5667888766543221               11100 00000


Q ss_pred             ------------------------CCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHHHHHH
Q 008510          185 ------------------------MNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAADKWL  228 (563)
Q Consensus       185 ------------------------~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~~f~  228 (563)
                                              .....+.+|. +.|.++.+ ++|+.++++..|+.+++|++...++
T Consensus       282 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~  349 (369)
T 3zwl_B          282 AKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHF-GPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYF  349 (369)
T ss_dssp             -------------CEEEEEETTTCCEEEEEECCS-SCEEEEEECTTSSEEEEEETTSEEEEEEECHHHH
T ss_pred             CceEEEEecCCCcceeEEEecCCCcchhheeccc-CcEEEEEECCCCCEEEEEcCCCeEEEEECccccc
Confidence                                    0112344554 67899999 8999999999999999999987654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.81  E-value=2.5e-18  Score=180.18  Aligned_cols=206  Identities=13%  Similarity=0.184  Sum_probs=156.9

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc---CCceeEEEe-cCCcEEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK---DGVCVQSIE-HPGCVWDA   76 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd---~~~~~~~l~-h~~~V~~v   76 (563)
                      +|++|++|+.||+|++||+ +++++.++.+|...|.++++++. .+++|+.|+++++|+   ....+.++. |...+.++
T Consensus       158 dg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~-~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~  236 (420)
T 4gga_A          158 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY-ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGL  236 (420)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEE
T ss_pred             CCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCC-EEEEEeCCCceeEeeecccceeeEEecccccceeee
Confidence            5899999999999999999 89999999999999999988644 899999999999999   455667777 88999999


Q ss_pred             EEccCCc-EEEEeCCCcEEEEEcCCCceec--eeeeccccccccee---------EE--eeccCCceEEEeCCCCceeee
Q 008510           77 KFLENGD-IVTACSDGVTRIWTVHSDKVAD--SLELEAYASELSQY---------KL--CRKKVGGLKLEDLPGLEALQI  142 (563)
Q Consensus        77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~--~~~~~~~~~~v~~~---------~~--~~~~~~~i~~~d~~~~~~l~~  142 (563)
                      .++|+|. +++++.|+.|++|+..+++...  ......+...+...         ..  .+..|+.|++||+.++..+..
T Consensus       237 ~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~  316 (420)
T 4gga_A          237 RWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA  316 (420)
T ss_dssp             EECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEE
T ss_pred             eecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccccee
Confidence            9999999 9999999999999998775321  11222333332221         11  345789999999987765443


Q ss_pred             c----------ccCCCeEEEEecC-CCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeee
Q 008510          143 P----------GTNAGQTKVVREG-DNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTR  210 (563)
Q Consensus       143 ~----------g~~dg~~~l~~~~-~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~  210 (563)
                      .          .++++...+..++ .++.+++||..++.               ....+.||. +.|.++.+ +||..++
T Consensus       317 ~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~---------------~v~~l~gH~-~~V~~l~~spdg~~l~  380 (420)
T 4gga_A          317 VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA---------------KVAELKGHT-SRVLSLTMSPDGATVA  380 (420)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC---------------EEEEECCCS-SCEEEEEECTTSSCEE
T ss_pred             eccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCc---------------EEEEEcCCC-CCEEEEEEcCCCCEEE
Confidence            3          3344444444432 34556777765542               223466776 78999999 9999999


Q ss_pred             eecCCCCCChhHHH
Q 008510          211 KLPYNRSDNPYDAA  224 (563)
Q Consensus       211 ~~~~n~~~~~w~~a  224 (563)
                      +++.|+++++|++.
T Consensus       381 S~s~D~tvriWdv~  394 (420)
T 4gga_A          381 SAAADETLRLWRCF  394 (420)
T ss_dssp             EEETTTEEEEECCS
T ss_pred             EEecCCeEEEEECC
Confidence            99999999999974

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.81  E-value=3.6e-18  Score=171.71  Aligned_cols=221  Identities=15%  Similarity=0.133  Sum_probs=151.0

Q ss_pred             CCCEEEEEECCCcEEEEcC-CC----ceeEEEecCCCcEEEEEEcC--CC-eEEEEeCCCcEEEEc--CC---------c
Q 008510            2 PGVGIISASHDCTIRLWAL-TG----QVLMEMVGHTAIVYSIDSHA--SG-LIVSGSEDRFAKIWK--DG---------V   62 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g----~~i~~l~gH~~~V~~v~~~p--~g-~l~s~s~D~tvriWd--~~---------~   62 (563)
                      +|++|++|+.||+|++||+ ++    +++..+.+|...|.+++|+|  ++ .+++|+.|++|++||  .+         +
T Consensus        22 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~  101 (351)
T 3f3f_A           22 YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWN  101 (351)
T ss_dssp             SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEE
T ss_pred             CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcc
Confidence            5789999999999999999 44    47788899999999999999  47 999999999999999  33         4


Q ss_pred             eeEEEe-cCCcEEEEEEccC--Cc-EEEEeCCCcEEEEEcCCCceeceeeec-----------cccccc-----------
Q 008510           63 CVQSIE-HPGCVWDAKFLEN--GD-IVTACSDGVTRIWTVHSDKVADSLELE-----------AYASEL-----------  116 (563)
Q Consensus        63 ~~~~l~-h~~~V~~v~~~p~--g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~-----------~~~~~v-----------  116 (563)
                      ++..+. |...|++++|+|+  +. +++|+.||.|++||+++++........           .+...+           
T Consensus       102 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  181 (351)
T 3f3f_A          102 KLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFS  181 (351)
T ss_dssp             EEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSS
T ss_pred             eeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCC
Confidence            466666 8889999999998  88 999999999999999887643322110           011111           


Q ss_pred             ceeEEeeccCCceEEEeCCCCce-------------eeecccCCC----eEEEEecCCCeEEEEEecccceEEEeC----
Q 008510          117 SQYKLCRKKVGGLKLEDLPGLEA-------------LQIPGTNAG----QTKVVREGDNGVAYSWDMKEQKWDKLG----  175 (563)
Q Consensus       117 ~~~~~~~~~~~~i~~~d~~~~~~-------------l~~~g~~dg----~~~l~~~~~~~~~~~wd~~~~~w~~~g----  175 (563)
                      ....+.+..++.+.+|+......             .....+++|    .+.+..+.| +.+++||...+......    
T Consensus       182 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~  260 (351)
T 3f3f_A          182 PEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKD-GRIRIFKITEKLSPLASEESL  260 (351)
T ss_dssp             CCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETT-SCEEEEEEEECC---------
T ss_pred             CcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCC-CeEEEEeCCCCcCccccCCcc
Confidence            34455566667776666554432             122244555    344443333 55667876543211000    


Q ss_pred             ------------cEeeCC-------------C--CCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHH
Q 008510          176 ------------EVVDGP-------------D--DGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAA  224 (563)
Q Consensus       176 ------------~v~~~~-------------~--~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a  224 (563)
                                  ......             .  .......+.+|. +.|.++.+ ++|..+++++.|+.+++|++.
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~  336 (351)
T 3f3f_A          261 TNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHN-GEVWSVSWNLTGTILSSAGDDGKVRLWKAT  336 (351)
T ss_dssp             ------------------------------CCSEEEEEEEEECTTS-SCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             cceeccCCCcccccccccccccccceeeeecccccccEEEEEeccc-ccEEEEEEcCCCCEEEEecCCCcEEEEecC
Confidence                        000000             0  000123356665 77999999 899999999999999999975

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.81  E-value=2.6e-18  Score=187.01  Aligned_cols=201  Identities=25%  Similarity=0.415  Sum_probs=156.0

Q ss_pred             CCCEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe-cCCcEEEEEE
Q 008510            2 PGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE-HPGCVWDAKF   78 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~-h~~~V~~v~~   78 (563)
                      +|+.+++++.|++|++|+.+++.+..+.+|...|.+++|+|+| .+++++.|++|++|+ +++++.++. |...|.+++|
T Consensus       314 ~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~  393 (577)
T 2ymu_A          314 DGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAF  393 (577)
T ss_dssp             TSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEE
Confidence            5789999999999999999888889999999999999999999 999999999999999 889998888 8889999999


Q ss_pred             ccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCCceeeecc-----
Q 008510           79 LENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLEALQIPG-----  144 (563)
Q Consensus        79 ~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~~l~~~g-----  144 (563)
                      +|+|+ +++++.|+.|++||..... .  ..+..+...+.        ...+++..++.+++||..+.......+     
T Consensus       394 s~dg~~l~~~~~d~~v~~~~~~~~~-~--~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v  470 (577)
T 2ymu_A          394 SPDGQTIASASDDKTVKLWNRNGQL-L--QTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSV  470 (577)
T ss_dssp             CTTSSCEEEEETTSEEEEECTTCCE-E--EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCE
T ss_pred             CCCCCEEEEEeCCCEEEEEeCCCCE-E--EEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCE
Confidence            99999 9999999999999965432 2  12333333332        345567788999999986543333334     


Q ss_pred             -----cCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCC
Q 008510          145 -----TNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSD  218 (563)
Q Consensus       145 -----~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~  218 (563)
                           +++|.+.+..+.+ +.+.+|+..       +..         .+.+.||. +.|.++.+ +||+.+++...|+.+
T Consensus       471 ~~~~~spd~~~las~~~d-~~i~iw~~~-------~~~---------~~~~~~h~-~~v~~l~~s~dg~~l~s~~~dg~v  532 (577)
T 2ymu_A          471 RGVAFSPDGQTIASASDD-KTVKLWNRN-------GQL---------LQTLTGHS-SSVRGVAFSPDGQTIASASDDKTV  532 (577)
T ss_dssp             EEEEECTTSCEEEEEETT-SEEEEEETT-------SCE---------EEEEECCS-SCEEEEEECTTSSCEEEEETTSEE
T ss_pred             EEEEEcCCCCEEEEEeCC-CEEEEEcCC-------CCE---------EEEEeCCC-CCEEEEEEcCCCCEEEEEECcCEE
Confidence                 4455544444333 445566632       111         22356665 67999999 999999999999999


Q ss_pred             ChhHH
Q 008510          219 NPYDA  223 (563)
Q Consensus       219 ~~w~~  223 (563)
                      ++|+.
T Consensus       533 ~lwd~  537 (577)
T 2ymu_A          533 KLWNR  537 (577)
T ss_dssp             EEECT
T ss_pred             EEEeC
Confidence            99985

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.81  E-value=2.5e-18  Score=182.06  Aligned_cols=206  Identities=21%  Similarity=0.336  Sum_probs=156.4

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAK   77 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~   77 (563)
                      +++++++|+.||+|++||+ +++++.++.+|.+.|.+++|+|++.+++|+.|++|++||  +++++..+. |...|.+++
T Consensus       131 ~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~  210 (464)
T 3v7d_B          131 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLD  210 (464)
T ss_dssp             ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEE
Confidence            4789999999999999999 899999999999999999999988999999999999999  788888888 999999999


Q ss_pred             Ecc--CCc-EEEEeCCCcEEEEEcCCCceece---------------------eeeccccccc------ceeEEeeccCC
Q 008510           78 FLE--NGD-IVTACSDGVTRIWTVHSDKVADS---------------------LELEAYASEL------SQYKLCRKKVG  127 (563)
Q Consensus        78 ~~p--~g~-i~sgs~Dg~Irvwd~~~~~~~~~---------------------~~~~~~~~~v------~~~~~~~~~~~  127 (563)
                      |++  ++. +++|+.||.|++||++++.....                     ..+..+...+      ....+++..++
T Consensus       211 ~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~  290 (464)
T 3v7d_B          211 IVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDN  290 (464)
T ss_dssp             EEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTS
T ss_pred             EecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCC
Confidence            995  666 99999999999999988753221                     1122222222      24566778899


Q ss_pred             ceEEEeCCCCceeeec-ccC----------CCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccC
Q 008510          128 GLKLEDLPGLEALQIP-GTN----------AGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYD  196 (563)
Q Consensus       128 ~i~~~d~~~~~~l~~~-g~~----------dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d  196 (563)
                      .|++||+...+.+... ++.          +|...+..+.+ +.+++||..++..               ...+.+|. .
T Consensus       291 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d-g~i~vwd~~~~~~---------------~~~~~~h~-~  353 (464)
T 3v7d_B          291 TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMD-TTIRIWDLENGEL---------------MYTLQGHT-A  353 (464)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETT-SCEEEEETTTTEE---------------EEEECCCS-S
T ss_pred             eEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCC-CcEEEEECCCCcE---------------EEEEeCCC-C
Confidence            9999999877655433 444          34443433333 4456777655432               12345554 6


Q ss_pred             cEEEEEcCCCCeeeeecCCCCCChhHHHH
Q 008510          197 YVFDVDIGDGEPTRKLPYNRSDNPYDAAD  225 (563)
Q Consensus       197 ~v~~vd~~dg~~~~~~~~n~~~~~w~~a~  225 (563)
                      .|..+.+. +..++++..|+.+++|++.+
T Consensus       354 ~v~~~~~~-~~~l~s~s~dg~v~vwd~~~  381 (464)
T 3v7d_B          354 LVGLLRLS-DKFLVSAAADGSIRGWDAND  381 (464)
T ss_dssp             CEEEEEEC-SSEEEEEETTSEEEEEETTT
T ss_pred             cEEEEEEc-CCEEEEEeCCCcEEEEECCC
Confidence            68888884 57799999999999999753

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.80  E-value=1.5e-18  Score=180.45  Aligned_cols=198  Identities=17%  Similarity=0.108  Sum_probs=134.0

Q ss_pred             CCEEEEEECCCcEEEEcC-CCce-----eEEEecCCCcEEEEEEcC--------CC-eEEEEeCCCcEEEEc--CCceeE
Q 008510            3 GVGIISASHDCTIRLWAL-TGQV-----LMEMVGHTAIVYSIDSHA--------SG-LIVSGSEDRFAKIWK--DGVCVQ   65 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~-----i~~l~gH~~~V~~v~~~p--------~g-~l~s~s~D~tvriWd--~~~~~~   65 (563)
                      +.++++|+.|++||+||. .+++     +..+.||++.|++|+|+|        +| .|+|||.|++|||||  ++.++.
T Consensus       101 ~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~  180 (393)
T 4gq1_A          101 SLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL  180 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEE
T ss_pred             CCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceee
Confidence            457999999999999999 5544     334679999999999998        67 899999999999999  555554


Q ss_pred             EE-ecCCcEEEEEEccCCc--EEEEeCCCcEEEEEcCCCceeceee-----------------------eccccccc---
Q 008510           66 SI-EHPGCVWDAKFLENGD--IVTACSDGVTRIWTVHSDKVADSLE-----------------------LEAYASEL---  116 (563)
Q Consensus        66 ~l-~h~~~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~~-----------------------~~~~~~~v---  116 (563)
                      .+ .|...|.+|+|+|++.  +++|+.|++|++||+++++......                       ...+...+   
T Consensus       181 ~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v  260 (393)
T 4gq1_A          181 AGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANV  260 (393)
T ss_dssp             EEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEE
T ss_pred             eecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceee
Confidence            44 4889999999999874  8999999999999998876321110                       01111111   


Q ss_pred             ------ceeEEeeccCCceEEEeCCCCceeeec------------------------------ccCCCeEEEEecCCCeE
Q 008510          117 ------SQYKLCRKKVGGLKLEDLPGLEALQIP------------------------------GTNAGQTKVVREGDNGV  160 (563)
Q Consensus       117 ------~~~~~~~~~~~~i~~~d~~~~~~l~~~------------------------------g~~dg~~~l~~~~~~~~  160 (563)
                            ....++...++.+++||+.........                              ..+.+...++...+++.
T Consensus       261 ~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~  340 (393)
T 4gq1_A          261 RWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGL  340 (393)
T ss_dssp             EEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTE
T ss_pred             eeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCE
Confidence                  234556778899999998644221110                              01112234444555577


Q ss_pred             EEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCC
Q 008510          161 AYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNR  216 (563)
Q Consensus       161 ~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~  216 (563)
                      +++||...+..               .....++. ..|.++.| +||+.++....++
T Consensus       341 V~lwd~~~~~~---------------~~~~~~~~-~~V~svafspdG~~LA~as~~G  381 (393)
T 4gq1_A          341 IQLINTYEKDS---------------NSIPIQLG-MPIVDFCWHQDGSHLAIATEGS  381 (393)
T ss_dssp             EEEEETTCTTC---------------CEEEEECS-SCEEEEEECTTSSEEEEEESSE
T ss_pred             EEEEECCCCcE---------------EEEecCCC-CcEEEEEEcCCCCEEEEEeCCC
Confidence            78888765421               11223333 56999999 9999888876554

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.80  E-value=4.3e-18  Score=190.29  Aligned_cols=204  Identities=21%  Similarity=0.233  Sum_probs=147.8

Q ss_pred             CCEEEEEECCCcEEEEcC-C-----CceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCc
Q 008510            3 GVGIISASHDCTIRLWAL-T-----GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGC   72 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~-----g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~   72 (563)
                      +++|+|||.|++|++|++ +     +.+.+.+.+|...|.+++|+|+| .++|||.|++|+|||  ++.+++.+. |...
T Consensus       395 ~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~  474 (694)
T 3dm0_A          395 ADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKD  474 (694)
T ss_dssp             CSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC
T ss_pred             CCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCC
Confidence            478999999999999998 3     34567899999999999999999 999999999999999  778888887 9999


Q ss_pred             EEEEEEccCCc-EEEEeCCCcEEEEEcCCCceecee-eeccccccc----------ceeEEeeccCCceEEEeCCCCcee
Q 008510           73 VWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSL-ELEAYASEL----------SQYKLCRKKVGGLKLEDLPGLEAL  140 (563)
Q Consensus        73 V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~-~~~~~~~~v----------~~~~~~~~~~~~i~~~d~~~~~~l  140 (563)
                      |++++|+|+|+ +++|+.|++|++||.......... ....|...+          ....+++..++.|++||++.....
T Consensus       475 v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~  554 (694)
T 3dm0_A          475 VLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR  554 (694)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEE
T ss_pred             EEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEE
Confidence            99999999998 999999999999998765422111 111222222          235667888999999999876544


Q ss_pred             eec-----------ccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCe
Q 008510          141 QIP-----------GTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEP  208 (563)
Q Consensus       141 ~~~-----------g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~  208 (563)
                      ...           .+++|...+..+.| +.+.+||..++...      .         .+..  ...|.++.+ +++. 
T Consensus       555 ~~~~~h~~~v~~v~~spdg~~l~sg~~D-g~i~iwd~~~~~~~------~---------~~~~--~~~v~~~~~sp~~~-  615 (694)
T 3dm0_A          555 STLAGHTGYVSTVAVSPDGSLCASGGKD-GVVLLWDLAEGKKL------Y---------SLEA--NSVIHALCFSPNRY-  615 (694)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETT-SBCEEEETTTTEEE------E---------CCBC--SSCEEEEEECSSSS-
T ss_pred             EEEcCCCCCEEEEEEeCCCCEEEEEeCC-CeEEEEECCCCceE------E---------EecC--CCcEEEEEEcCCCc-
Confidence            322           34455544444443 44566776554321      1         0111  245788888 6665 


Q ss_pred             eeeecCCCCCChhHHHH
Q 008510          209 TRKLPYNRSDNPYDAAD  225 (563)
Q Consensus       209 ~~~~~~n~~~~~w~~a~  225 (563)
                      .+....+.++++|++..
T Consensus       616 ~l~~~~~~~i~iwd~~~  632 (694)
T 3dm0_A          616 WLCAATEHGIKIWDLES  632 (694)
T ss_dssp             EEEEEETTEEEEEETTT
T ss_pred             EEEEEcCCCEEEEECCC
Confidence            45555677789998754

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.80  E-value=5.1e-19  Score=186.47  Aligned_cols=209  Identities=14%  Similarity=0.099  Sum_probs=144.3

Q ss_pred             CCCEEEEEECCCcEEEEcCCCceeEEEecC---CCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe-cCCcEEE
Q 008510            2 PGVGIISASHDCTIRLWALTGQVLMEMVGH---TAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE-HPGCVWD   75 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~gH---~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~-h~~~V~~   75 (563)
                      ++++|+|||.||+|++||+.+.....+..|   ...+.+++|+|++ .+++|+.||+|++|| .++++.++. |...|.+
T Consensus       176 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~  255 (435)
T 4e54_B          176 NTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTH  255 (435)
T ss_dssp             CTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEE
T ss_pred             CCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEe
Confidence            578999999999999999966665555433   3467899999999 999999999999999 888877777 9999999


Q ss_pred             EEEccCCc--EEEEeCCCcEEEEEcCCCceecee-eeccccccc--------ceeEEeeccCCceEEEeCCCCceeeec-
Q 008510           76 AKFLENGD--IVTACSDGVTRIWTVHSDKVADSL-ELEAYASEL--------SQYKLCRKKVGGLKLEDLPGLEALQIP-  143 (563)
Q Consensus        76 v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~-~~~~~~~~v--------~~~~~~~~~~~~i~~~d~~~~~~l~~~-  143 (563)
                      ++|+|++.  +++|+.|+.|++||+++.+..... ....|...+        ....+++..|+.|++||+......... 
T Consensus       256 v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~  335 (435)
T 4e54_B          256 VALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLI  335 (435)
T ss_dssp             EEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEEC
T ss_pred             eeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEe
Confidence            99999886  789999999999999887633221 112333322        245667888999999999765433211 


Q ss_pred             ----------------ccCCCeEEEE-----------ecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccC
Q 008510          144 ----------------GTNAGQTKVV-----------REGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYD  196 (563)
Q Consensus       144 ----------------g~~dg~~~l~-----------~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d  196 (563)
                                      .++++...++           ...++..+++|+..++...      .        .++.+|. .
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~------~--------~l~~~~~-~  400 (435)
T 4e54_B          336 PHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMM------C--------QLYDPES-S  400 (435)
T ss_dssp             CCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEE------E--------EECCSSC-C
T ss_pred             cccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEE------E--------EEeCCCC-C
Confidence                            1222222222           2223334566665554321      1        1122333 5


Q ss_pred             cEEEE-Ec-CCCCeeeeecCCCCCChhHHHHH
Q 008510          197 YVFDV-DI-GDGEPTRKLPYNRSDNPYDAADK  226 (563)
Q Consensus       197 ~v~~v-d~-~dg~~~~~~~~n~~~~~w~~a~~  226 (563)
                      .|.++ .| ++|..++++. |.++++|+..+.
T Consensus       401 ~v~s~~~fspdg~~lasg~-d~~i~iW~~~~g  431 (435)
T 4e54_B          401 GISSLNEFNPMGDTLASAM-GYHILIWSQQEA  431 (435)
T ss_dssp             CCCCEEEECTTSSCEEEEC-SSEEEECCCC--
T ss_pred             cEEEEEEECCCCCEEEEEc-CCcEEEEECCcC
Confidence            56666 56 8998777765 778999987543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.79  E-value=1.2e-17  Score=167.70  Aligned_cols=204  Identities=13%  Similarity=0.232  Sum_probs=154.7

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCc--eeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQ--VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVW   74 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~--~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~   74 (563)
                      +|+++++|+.||+|++||+ +++  ....+.+|...|.+++|+|++ .+++++.|+.|++||  +++.+..+. |...|.
T Consensus       108 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~  187 (337)
T 1gxr_A          108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS  187 (337)
T ss_dssp             TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceE
Confidence            4789999999999999999 555  677889999999999999999 899999999999999  777888887 888999


Q ss_pred             EEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecc----ccc-ccceeEEeeccCCceEEEeCCCCceeeecc----
Q 008510           75 DAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEA----YAS-ELSQYKLCRKKVGGLKLEDLPGLEALQIPG----  144 (563)
Q Consensus        75 ~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~----~~~-~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g----  144 (563)
                      +++|+|+|. +++++.||.|++||+++++.........    ..- .-....+.+..++.+.+||+.+.+.....+    
T Consensus       188 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~  267 (337)
T 1gxr_A          188 CIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESC  267 (337)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSC
T ss_pred             EEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccc
Confidence            999999998 9999999999999999987543322111    000 112445566778999999998776544433    


Q ss_pred             ------cCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCC
Q 008510          145 ------TNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRS  217 (563)
Q Consensus       145 ------~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~  217 (563)
                            +++|...+..+.+ +.+++|+...+...                 +...+.+.+.++.+ ++|..++....|+.
T Consensus       268 v~~~~~~~~~~~l~~~~~d-g~i~~~~~~~~~~~-----------------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  329 (337)
T 1gxr_A          268 VLSLKFAYCGKWFVSTGKD-NLLNAWRTPYGASI-----------------FQSKESSSVLSCDISVDDKYIVTGSGDKK  329 (337)
T ss_dssp             EEEEEECTTSSEEEEEETT-SEEEEEETTTCCEE-----------------EEEECSSCEEEEEECTTSCEEEEEETTSC
T ss_pred             eeEEEECCCCCEEEEecCC-CcEEEEECCCCeEE-----------------EEecCCCcEEEEEECCCCCEEEEecCCCe
Confidence                  4455544444443 45567776554321                 11112356899999 89999999999999


Q ss_pred             CChhHH
Q 008510          218 DNPYDA  223 (563)
Q Consensus       218 ~~~w~~  223 (563)
                      +.+|++
T Consensus       330 i~iw~~  335 (337)
T 1gxr_A          330 ATVYEV  335 (337)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999975

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.79  E-value=4.9e-19  Score=181.97  Aligned_cols=209  Identities=10%  Similarity=-0.045  Sum_probs=142.6

Q ss_pred             CCCEEEEEECCCcEEEEcC-CC--ceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCc---eeEEEe-cCC
Q 008510            2 PGVGIISASHDCTIRLWAL-TG--QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGV---CVQSIE-HPG   71 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g--~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~---~~~~l~-h~~   71 (563)
                      +|++|++|+.|++|++||+ ++  +++.++.+|...|.+++|+|++ .+++|+.|++|++||  +++   +...+. |..
T Consensus        22 ~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~  101 (377)
T 3dwl_C           22 QRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNR  101 (377)
T ss_dssp             SSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSS
T ss_pred             CCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCC
Confidence            5789999999999999999 66  7888999999999999999999 999999999999999  444   455554 888


Q ss_pred             cEEEEEEccCCc-EEEEeCCCcEEEEEcCCCcee-ceeeecc-cccccc--------eeEEeeccCCceEEEeCCCC---
Q 008510           72 CVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVA-DSLELEA-YASELS--------QYKLCRKKVGGLKLEDLPGL---  137 (563)
Q Consensus        72 ~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~-~~~~~~~-~~~~v~--------~~~~~~~~~~~i~~~d~~~~---  137 (563)
                      .|++++|+|+|+ +++|+.|+.|++||+++++.. ....+.. +...+.        ...+++..++.|++||+...   
T Consensus       102 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  181 (377)
T 3dwl_C          102 AATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVD  181 (377)
T ss_dssp             CEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC
T ss_pred             ceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccC
Confidence            999999999998 999999999999999987521 1122222 333332        35567778899999998421   


Q ss_pred             ---------------c----------eeeecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecC
Q 008510          138 ---------------E----------ALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDG  192 (563)
Q Consensus       138 ---------------~----------~l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g  192 (563)
                                     .          +.....+++|.+.+..+.+ +.+++||...+....           .....+.+
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~~i~iwd~~~~~~~~-----------~~~~~~~~  249 (377)
T 3dwl_C          182 AKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHD-SSVTIAYPSAPEQPP-----------RALITVKL  249 (377)
T ss_dssp             -CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETT-TEEC-CEECSTTSCE-----------EECCCEEC
T ss_pred             CCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCC-CcEEEEECCCCCCcc-----------eeeEeecC
Confidence                           1          1222345566555555444 445667654432100           00223555


Q ss_pred             cccCcEEEEEc-CCCCeeeeecCCCCCChhHHH
Q 008510          193 IQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAA  224 (563)
Q Consensus       193 ~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a  224 (563)
                      |. +.|.++.+ ++|+.++.+..+... .|...
T Consensus       250 ~~-~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          250 SQ-LPLRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             SS-SCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             CC-CceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence            55 67899999 899877777655444 66543

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.79  E-value=1e-17  Score=168.88  Aligned_cols=219  Identities=18%  Similarity=0.168  Sum_probs=153.7

Q ss_pred             CCEEEEEECCCcEEEEcC-CC-----ceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCc
Q 008510            3 GVGIISASHDCTIRLWAL-TG-----QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGC   72 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g-----~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~   72 (563)
                      +++|+|||.|++||+||+ ++     .+.+++.+|...|.+++|+|+| .+++|+.|+.|++|+  ......... +...
T Consensus        51 ~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~  130 (340)
T 4aow_A           51 PDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD  130 (340)
T ss_dssp             TTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC
T ss_pred             CCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCc
Confidence            579999999999999998 32     3678899999999999999999 999999999999999  445555554 6678


Q ss_pred             EEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccc----------cceeEEeeccCCceEEEeCCCCceee
Q 008510           73 VWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASE----------LSQYKLCRKKVGGLKLEDLPGLEALQ  141 (563)
Q Consensus        73 V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~~i~~~d~~~~~~l~  141 (563)
                      +..+.+++++. +++|+.|+.+++||........ .....+...          .....+++..++.|++||+.......
T Consensus       131 ~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~  209 (340)
T 4aow_A          131 VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYT-VQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKT  209 (340)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE-ECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEE
T ss_pred             eeEEEEeecCccceeecCCCeEEEEEeCCCceEE-EEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceee
Confidence            99999999988 9999999999999988765321 112222221          22345567788899999987664432


Q ss_pred             e-----------cccCCCeEEEEecCCCeEEEEEecccceEEEe---------------CcEeeCCCCCC--------C-
Q 008510          142 I-----------PGTNAGQTKVVREGDNGVAYSWDMKEQKWDKL---------------GEVVDGPDDGM--------N-  186 (563)
Q Consensus       142 ~-----------~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~---------------g~v~~~~~~~~--------~-  186 (563)
                      .           ..+++|.+.+..+.| +.+.+||.........               +.++....++.        . 
T Consensus       210 ~~~~h~~~v~~~~~s~~~~~l~s~s~D-g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~  288 (340)
T 4aow_A          210 NHIGHTGYLNTVTVSPDGSLCASGGKD-GQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKI  288 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETT-CEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTE
T ss_pred             EecCCCCcEEEEEECCCCCEEEEEeCC-CeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCCCe
Confidence            2           245666665555554 5667888765542211               11111111100        0 


Q ss_pred             ----------ceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHH
Q 008510          187 ----------RPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAA  224 (563)
Q Consensus       187 ----------~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a  224 (563)
                                .....++ .+.|.++.+ +||+.+++++.|+.+++|+++
T Consensus       289 ~~~~~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~  336 (340)
T 4aow_A          289 IVDELKQEVISTSSKAE-PPQCTSLAWSADGQTLFAGYTDNLVRVWQVT  336 (340)
T ss_dssp             EEEEECCC-------CC-CCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred             EEEeccccceeeeccCC-CCCEEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence                      0011233 367899999 999999999999999999975

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.79  E-value=1.3e-17  Score=173.62  Aligned_cols=208  Identities=12%  Similarity=0.129  Sum_probs=159.7

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc---CCceeEEEe-cCCcEEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK---DGVCVQSIE-HPGCVWDA   76 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd---~~~~~~~l~-h~~~V~~v   76 (563)
                      +|++|++|+.||+|++||+ +++.+.++.+|...|.+++|+++ .+++|+.|++|++||   ....+..+. |...|.++
T Consensus       145 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~  223 (401)
T 4aez_A          145 DGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRH-VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGL  223 (401)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEETT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEE
T ss_pred             CCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECCC-EEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEE
Confidence            5789999999999999999 88999999999999999999543 899999999999999   356667776 99999999


Q ss_pred             EEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc---------eeEEeec--cCCceEEEeCCCCceeeec-
Q 008510           77 KFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS---------QYKLCRK--KVGGLKLEDLPGLEALQIP-  143 (563)
Q Consensus        77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~---------~~~~~~~--~~~~i~~~d~~~~~~l~~~-  143 (563)
                      +|+|+|. +++|+.||.|++||+++++...  .+..+...+.         ....++.  .++.|++||+.....+... 
T Consensus       224 ~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~  301 (401)
T 4aez_A          224 AWRSDGLQLASGGNDNVVQIWDARSSIPKF--TKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD  301 (401)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTCSSEEE--EECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE
T ss_pred             EEcCCCCEEEEEeCCCeEEEccCCCCCccE--EecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe
Confidence            9999998 9999999999999999876432  2233333332         2333332  6899999999876554332 


Q ss_pred             ---------ccCCCeEEEEecC-CCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeee
Q 008510          144 ---------GTNAGQTKVVREG-DNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKL  212 (563)
Q Consensus       144 ---------g~~dg~~~l~~~~-~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~  212 (563)
                               .+++|...+..++ .++.+++|+...+.+.....             +.+|. +.|.++.+ ++|..+++.
T Consensus       302 ~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~-------------~~~h~-~~v~~~~~s~dg~~l~s~  367 (401)
T 4aez_A          302 AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVD-------------IPAHD-TRVLYSALSPDGRILSTA  367 (401)
T ss_dssp             CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEE-------------EECCS-SCCCEEEECTTSSEEEEE
T ss_pred             CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEE-------------ecCCC-CCEEEEEECCCCCEEEEE
Confidence                     4566766666432 45677788876655443322             33443 56889999 899999999


Q ss_pred             cCCCCCChhHHHHH
Q 008510          213 PYNRSDNPYDAADK  226 (563)
Q Consensus       213 ~~n~~~~~w~~a~~  226 (563)
                      ..|+.+.+|++...
T Consensus       368 ~~dg~i~iw~~~~~  381 (401)
T 4aez_A          368 ASDENLKFWRVYDG  381 (401)
T ss_dssp             CTTSEEEEEECCC-
T ss_pred             eCCCcEEEEECCCC
Confidence            99999999998543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.79  E-value=3.3e-18  Score=177.99  Aligned_cols=205  Identities=17%  Similarity=0.263  Sum_probs=145.6

Q ss_pred             CCCEEEEEECCCcEEEEcC-CC-------ceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCceeEEE--
Q 008510            2 PGVGIISASHDCTIRLWAL-TG-------QVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSI--   67 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g-------~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~~~l--   67 (563)
                      ++++|++|+.||+|++|++ ++       +++..+.+|...|.+++|+|++  .+++|+.|++|++||  +++++..+  
T Consensus        93 ~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  172 (402)
T 2aq5_A           93 NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP  172 (402)
T ss_dssp             CTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT
T ss_pred             CCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec
Confidence            5789999999999999999 55       6788999999999999999996  799999999999999  78888888  


Q ss_pred             e-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccc-c--------ceeEEee---ccCCceEEEe
Q 008510           68 E-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASE-L--------SQYKLCR---KKVGGLKLED  133 (563)
Q Consensus        68 ~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~-v--------~~~~~~~---~~~~~i~~~d  133 (563)
                      . |...|.+++|+|+|. +++|+.||.|++||+++++...... ..+... +        .....++   ..++.|++||
T Consensus       173 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd  251 (402)
T 2aq5_A          173 DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKD-RPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWD  251 (402)
T ss_dssp             TTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEE-CSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEE
T ss_pred             CCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeec-cCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEc
Confidence            5 888999999999998 9999999999999999987543321 222221 1        2334444   5789999999


Q ss_pred             CCCCce-e--e----------ecccCCCeEEEEecCCCeEEEEEecccce--EEEeCcEeeCCCCCCCceeecCcccCcE
Q 008510          134 LPGLEA-L--Q----------IPGTNAGQTKVVREGDNGVAYSWDMKEQK--WDKLGEVVDGPDDGMNRPILDGIQYDYV  198 (563)
Q Consensus       134 ~~~~~~-l--~----------~~g~~dg~~~l~~~~~~~~~~~wd~~~~~--w~~~g~v~~~~~~~~~~~~~~g~~~d~v  198 (563)
                      +..... +  .          ...+++|...++.+..++.+++|+...+.  ...+             ..+.  ..+.|
T Consensus       252 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l-------------~~~~--~~~~v  316 (402)
T 2aq5_A          252 TKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYL-------------SMFS--SKESQ  316 (402)
T ss_dssp             TTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEE-------------EEEC--CSSCC
T ss_pred             CccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEee-------------cccc--cCCcc
Confidence            976543 1  1          11345565555444434556677765432  1111             0111  12456


Q ss_pred             EEEEc-CCCCeeeeecCCCCCChhHHH
Q 008510          199 FDVDI-GDGEPTRKLPYNRSDNPYDAA  224 (563)
Q Consensus       199 ~~vd~-~dg~~~~~~~~n~~~~~w~~a  224 (563)
                      .++.+ ++|..++.  .+..+++|++.
T Consensus       317 ~~~~~sp~~~~~~s--~~~~~~~~~l~  341 (402)
T 2aq5_A          317 RGMGYMPKRGLEVN--KCEIARFYKLH  341 (402)
T ss_dssp             SEEEECCGGGSCGG--GTEEEEEEEEE
T ss_pred             cceEEeccccccee--cceeEEEEEcC
Confidence            77777 66654432  44466677664

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.79  E-value=1.7e-17  Score=169.53  Aligned_cols=206  Identities=11%  Similarity=0.014  Sum_probs=150.8

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCc--eeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe---cCCc
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQ--VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE---HPGC   72 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~--~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~---h~~~   72 (563)
                      +|++|++|+.|++|++||+ +++  ++.++.+|...|.+++|+|++ .+++++.|++|++||  +++....+.   |...
T Consensus        19 ~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~   98 (372)
T 1k8k_C           19 DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRA   98 (372)
T ss_dssp             TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSC
T ss_pred             CCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCc
Confidence            5789999999999999999 666  889999999999999999999 999999999999999  665554443   8889


Q ss_pred             EEEEEEccCCc-EEEEeCCCcEEEEEcCCCcee--ceeeeccccccc--------ceeEEeeccCCceEEEeCC------
Q 008510           73 VWDAKFLENGD-IVTACSDGVTRIWTVHSDKVA--DSLELEAYASEL--------SQYKLCRKKVGGLKLEDLP------  135 (563)
Q Consensus        73 V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~--~~~~~~~~~~~v--------~~~~~~~~~~~~i~~~d~~------  135 (563)
                      |.+++|+|+|. +++|+.|+.|++||++.+...  .......+...+        ....+++..++.+++||+.      
T Consensus        99 v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~  178 (372)
T 1k8k_C           99 ARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEE  178 (372)
T ss_dssp             EEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSC
T ss_pred             eeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccc
Confidence            99999999998 999999999999999887521  111112222222        2345667788999999953      


Q ss_pred             ------------CCceee-----------ecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecC
Q 008510          136 ------------GLEALQ-----------IPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDG  192 (563)
Q Consensus       136 ------------~~~~l~-----------~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g  192 (563)
                                  ....+.           ...+++|...+..+.+ +.+++||...+...               ..+.+
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~i~d~~~~~~~---------------~~~~~  242 (372)
T 1k8k_C          179 RPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD-STVCLADADKKMAV---------------ATLAS  242 (372)
T ss_dssp             CCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT-TEEEEEEGGGTTEE---------------EEEEC
T ss_pred             cccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCC-CEEEEEECCCCcee---------------EEEcc
Confidence                        222222           2244556555554444 55677887654321               22334


Q ss_pred             cccCcEEEEEc-CCCCeeeeecCCCCCChhHHHH
Q 008510          193 IQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAAD  225 (563)
Q Consensus       193 ~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~  225 (563)
                      +. ..|.++.+ ++|..++.. .|+.+.+|+...
T Consensus       243 ~~-~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          243 ET-LPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             SS-CCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             CC-CCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            43 56888998 788866666 999999999865

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.78  E-value=2.4e-17  Score=164.49  Aligned_cols=206  Identities=12%  Similarity=0.164  Sum_probs=153.7

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc---CCceeEEEe-cCCcEEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK---DGVCVQSIE-HPGCVWDA   76 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd---~~~~~~~l~-h~~~V~~v   76 (563)
                      +|+++++||.||+|++|++ +++++.++.+|...+.++.+.+. .+++++.|+.+++|+   ....+..+. |...+.++
T Consensus        78 ~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~-~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (318)
T 4ggc_A           78 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY-ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGL  156 (318)
T ss_dssp             TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEE
T ss_pred             CCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCC-EEEEEecCCceEeeecCCCceeEEEEcCccCceEEE
Confidence            5789999999999999999 89999999999999988776544 899999999999999   345556666 88899999


Q ss_pred             EEccCCc-EEEEeCCCcEEEEEcCCCceece--eeecccccccc---------e--eEEeeccCCceEEEeCCCCceeee
Q 008510           77 KFLENGD-IVTACSDGVTRIWTVHSDKVADS--LELEAYASELS---------Q--YKLCRKKVGGLKLEDLPGLEALQI  142 (563)
Q Consensus        77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~--~~~~~~~~~v~---------~--~~~~~~~~~~i~~~d~~~~~~l~~  142 (563)
                      .+.++|. +++++.||.|++||+++++....  .....+...+.         .  ....+..++.|++||.........
T Consensus       157 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~  236 (318)
T 4ggc_A          157 RWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA  236 (318)
T ss_dssp             EECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEE
T ss_pred             EEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccc
Confidence            9999998 99999999999999988753211  11111222211         1  122456678999999987655433


Q ss_pred             c----------ccCCCeEEEEec-CCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeee
Q 008510          143 P----------GTNAGQTKVVRE-GDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTR  210 (563)
Q Consensus       143 ~----------g~~dg~~~l~~~-~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~  210 (563)
                      .          .++++...+..+ ..++.+++||..++.               ....+.||. +.|.++.+ +||..++
T Consensus       237 ~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~---------------~~~~l~gH~-~~V~~l~~spdg~~l~  300 (318)
T 4ggc_A          237 VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA---------------KVAELKGHT-SRVLSLTMSPDGATVA  300 (318)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC---------------EEEEECCCS-SCEEEEEECTTSSCEE
T ss_pred             ccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCc---------------EEEEEcCCC-CCEEEEEEcCCCCEEE
Confidence            3          233444444433 234567778865542               123466776 78999999 9999999


Q ss_pred             eecCCCCCChhHHH
Q 008510          211 KLPYNRSDNPYDAA  224 (563)
Q Consensus       211 ~~~~n~~~~~w~~a  224 (563)
                      +++.|+++++|++.
T Consensus       301 S~s~D~~v~iWd~~  314 (318)
T 4ggc_A          301 SAAADETLRLWRCF  314 (318)
T ss_dssp             EEETTTEEEEECCS
T ss_pred             EEecCCeEEEEECC
Confidence            99999999999974

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.78  E-value=9.5e-18  Score=167.31  Aligned_cols=173  Identities=21%  Similarity=0.290  Sum_probs=125.9

Q ss_pred             CCEEEEEECCCcEEEEcC-CC--ceeEEEecCCCcEEEEEEcCC--C-eEEEEeCCCcEEEEc--CCc--eeEEEe-cCC
Q 008510            3 GVGIISASHDCTIRLWAL-TG--QVLMEMVGHTAIVYSIDSHAS--G-LIVSGSEDRFAKIWK--DGV--CVQSIE-HPG   71 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g--~~i~~l~gH~~~V~~v~~~p~--g-~l~s~s~D~tvriWd--~~~--~~~~l~-h~~   71 (563)
                      |++|+|||.|++|++||+ ++  .++.++.+|...|.+++|+|+  | .+++|+.|++|++||  .+.  ....+. |..
T Consensus        67 g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~  146 (297)
T 2pm7_B           67 GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAI  146 (297)
T ss_dssp             CSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSS
T ss_pred             CCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccC
Confidence            789999999999999999 55  467788999999999999997  6 899999999999999  332  234455 888


Q ss_pred             cEEEEEEccC-------------Cc-EEEEeCCCcEEEEEcCCCcee--ceeeecccccccc-----------eeEEeec
Q 008510           72 CVWDAKFLEN-------------GD-IVTACSDGVTRIWTVHSDKVA--DSLELEAYASELS-----------QYKLCRK  124 (563)
Q Consensus        72 ~V~~v~~~p~-------------g~-i~sgs~Dg~Irvwd~~~~~~~--~~~~~~~~~~~v~-----------~~~~~~~  124 (563)
                      .|.+++|+|+             ++ |++|+.|++|++||+++++..  ....+..|...+.           .+.+++.
T Consensus       147 ~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s  226 (297)
T 2pm7_B          147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVS  226 (297)
T ss_dssp             CEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred             ccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEE
Confidence            9999999996             45 999999999999999876521  2223444443322           4566778


Q ss_pred             cCCceEEEeCCCCc------ee----------eecccCCCeEEEEecCCCeEEEEEecc-cceEEEeCc
Q 008510          125 KVGGLKLEDLPGLE------AL----------QIPGTNAGQTKVVREGDNGVAYSWDMK-EQKWDKLGE  176 (563)
Q Consensus       125 ~~~~i~~~d~~~~~------~l----------~~~g~~dg~~~l~~~~~~~~~~~wd~~-~~~w~~~g~  176 (563)
                      .|+.|++||+....      .+          ....+++|...+..+.| +.+.+|+.. .+.|..+.+
T Consensus       227 ~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D-~~v~lw~~~~~g~w~~~~~  294 (297)
T 2pm7_B          227 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD-NKVTLWKENLEGKWEPAGE  294 (297)
T ss_dssp             TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETT-SCEEEEEECTTSCEEEC--
T ss_pred             CCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCC-CcEEEEEECCCCcEEeccc
Confidence            89999999986532      11          12245666666555555 445677754 456765543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.78  E-value=2.4e-17  Score=173.42  Aligned_cols=205  Identities=20%  Similarity=0.314  Sum_probs=157.2

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA   76 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v   76 (563)
                      +|+++++|+.||+|++||. +++++.++.+|.+.|.+++|  ++ .+++|+.||+|++||  +++++.++. |...|.++
T Consensus       142 d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l  219 (435)
T 1p22_A          142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHL  219 (435)
T ss_dssp             CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEE
T ss_pred             CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEE
Confidence            6789999999999999999 89999999999999999998  55 999999999999999  788888888 88899999


Q ss_pred             EEccCCcEEEEeCCCcEEEEEcCCCceece-eeecccccccc------eeEEeeccCCceEEEeCCCCceeeec-ccCCC
Q 008510           77 KFLENGDIVTACSDGVTRIWTVHSDKVADS-LELEAYASELS------QYKLCRKKVGGLKLEDLPGLEALQIP-GTNAG  148 (563)
Q Consensus        77 ~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~-~~~~~~~~~v~------~~~~~~~~~~~i~~~d~~~~~~l~~~-g~~dg  148 (563)
                      +|++ +.+++|+.||.|++||+++++.... ..+..+...+.      ...+++..++.|++||+...+.+... ++...
T Consensus       220 ~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~  298 (435)
T 1p22_A          220 RFNN-GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRG  298 (435)
T ss_dssp             ECCT-TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             EEcC-CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCc
Confidence            9974 3599999999999999988763321 23334443333      44567788999999999887766544 45444


Q ss_pred             eEEEEe-------cCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEcCCCCeeeeecCCCCCChh
Q 008510          149 QTKVVR-------EGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPY  221 (563)
Q Consensus       149 ~~~l~~-------~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~~dg~~~~~~~~n~~~~~w  221 (563)
                      ...+..       +..++.+.+||..++..               ...+.+|. +.|.++.+ +|..++.+..|+.+++|
T Consensus       299 v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~---------------~~~~~~h~-~~v~~~~~-~~~~l~sg~~dg~i~vw  361 (435)
T 1p22_A          299 IACLQYRDRLVVSGSSDNTIRLWDIECGAC---------------LRVLEGHE-ELVRCIRF-DNKRIVSGAYDGKIKVW  361 (435)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEETTTCCE---------------EEEECCCS-SCEEEEEC-CSSEEEEEETTSCEEEE
T ss_pred             EEEEEeCCCEEEEEeCCCeEEEEECCCCCE---------------EEEEeCCc-CcEEEEEe-cCCEEEEEeCCCcEEEE
Confidence            333222       22234456777654421               22355555 66888888 78889999999999999


Q ss_pred             HHHHH
Q 008510          222 DAADK  226 (563)
Q Consensus       222 ~~a~~  226 (563)
                      ++...
T Consensus       362 d~~~~  366 (435)
T 1p22_A          362 DLVAA  366 (435)
T ss_dssp             EHHHH
T ss_pred             ECCCC
Confidence            98654

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.78  E-value=6.3e-18  Score=174.31  Aligned_cols=203  Identities=12%  Similarity=0.066  Sum_probs=148.6

Q ss_pred             CCEEEEEECCCcEEEEcCCCceeEEEecCC---CcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe-cCCcEEEE
Q 008510            3 GVGIISASHDCTIRLWALTGQVLMEMVGHT---AIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE-HPGCVWDA   76 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~---~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~-h~~~V~~v   76 (563)
                      +++|++|+.|++|++||+.+..+..+.+|.   ..|.+++|+|++ .+++|+.|++|++|| +++++..+. |...|.++
T Consensus       131 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~  210 (383)
T 3ei3_B          131 TNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHA  210 (383)
T ss_dssp             EEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEE
Confidence            578999999999999999778777876655   889999999999 999999999999999 888888888 99999999


Q ss_pred             EEccCCc--EEEEeCCCcEEEEEcCC----Cceeceeeecccccc---------cceeEEeeccCCceEEEeCCCCceee
Q 008510           77 KFLENGD--IVTACSDGVTRIWTVHS----DKVADSLELEAYASE---------LSQYKLCRKKVGGLKLEDLPGLEALQ  141 (563)
Q Consensus        77 ~~~p~g~--i~sgs~Dg~Irvwd~~~----~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~i~~~d~~~~~~l~  141 (563)
                      +|+|++.  +++|+.|+.|++||+++    +......   .+...         -....+++..++.|++||+.......
T Consensus       211 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~  287 (383)
T 3ei3_B          211 EFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM---PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPD  287 (383)
T ss_dssp             EECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE---ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCS
T ss_pred             EECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe---cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccc
Confidence            9999987  79999999999999997    3322211   12222         23455677788999999997654322


Q ss_pred             ec-c----------------cCCCeEEEE--------ecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcc-c
Q 008510          142 IP-G----------------TNAGQTKVV--------REGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQ-Y  195 (563)
Q Consensus       142 ~~-g----------------~~dg~~~l~--------~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~-~  195 (563)
                      .. +                ++++....+        ..+.++.+++||..++...               ..+.++. .
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~~---------------~~l~~~~~~  352 (383)
T 3ei3_B          288 QIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLV---------------HQLRDPNAA  352 (383)
T ss_dssp             EEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTCCEE---------------EEECBTTBC
T ss_pred             ccccccccccccccceEEeccCCCCceEEEecCCcccccCCCCeEEEEecCCCcee---------------eeecCCCCC
Confidence            11 1                112222221        2234466778887665432               1233322 2


Q ss_pred             CcEEEEEc-CCCCeeeeecCCCCCChhHHH
Q 008510          196 DYVFDVDI-GDGEPTRKLPYNRSDNPYDAA  224 (563)
Q Consensus       196 d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a  224 (563)
                      ..+..+.+ ++|..++++. |+.+++|++.
T Consensus       353 ~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~  381 (383)
T 3ei3_B          353 GIISLNKFSPTGDVLASGM-GFNILIWNRE  381 (383)
T ss_dssp             SCCCEEEECTTSSEEEEEE-TTEEEEEECC
T ss_pred             ceEEEEEEecCccEEEEec-CCcEEEEecC
Confidence            44556688 8999888886 8999999874

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.78  E-value=1.6e-17  Score=169.21  Aligned_cols=163  Identities=26%  Similarity=0.334  Sum_probs=122.8

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe----cCCcEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE----HPGCVW   74 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~----h~~~V~   74 (563)
                      ++.++++||.|++|++||+ +++++.++.+|...|++++|+|++ .+++|+.|++|++|| .+.+.....    |...|.
T Consensus        87 ~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~  166 (343)
T 2xzm_R           87 ENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVS  166 (343)
T ss_dssp             STTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEE
T ss_pred             CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceee
Confidence            4688999999999999999 899999999999999999999999 999999999999999 666555443    777999


Q ss_pred             EEEEccCC----------c-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCC
Q 008510           75 DAKFLENG----------D-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLP  135 (563)
Q Consensus        75 ~v~~~p~g----------~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~  135 (563)
                      +++|+|++          . +++|+.||.|++||.+. +..  ..+..|...+.        .+.+++..++.|++||+.
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~--~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~  243 (343)
T 2xzm_R          167 CVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QIR--YTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDIL  243 (343)
T ss_dssp             EEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-EEE--EEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESS
T ss_pred             eeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-cee--EEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECC
Confidence            99999986          5 89999999999999543 211  23333433332        455677889999999984


Q ss_pred             CCc-----------eeeecccCCCeEEEEecCCCeEEEEEecccc
Q 008510          136 GLE-----------ALQIPGTNAGQTKVVREGDNGVAYSWDMKEQ  169 (563)
Q Consensus       136 ~~~-----------~l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~  169 (563)
                      ...           +.....++++.+..... + ..+.+|+..++
T Consensus       244 ~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~-d-~~v~iw~~~~~  286 (343)
T 2xzm_R          244 NLTYPQREFDAGSTINQIAFNPKLQWVAVGT-D-QGVKIFNLMTQ  286 (343)
T ss_dssp             CCSSCSEEEECSSCEEEEEECSSSCEEEEEE-S-SCEEEEESSSC
T ss_pred             CCcccceeecCCCcEEEEEECCCCCEEEEEC-C-CCEEEEEeCCC
Confidence            221           12223566666544333 3 33677886544

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.78  E-value=1.8e-17  Score=187.85  Aligned_cols=206  Identities=12%  Similarity=0.077  Sum_probs=156.6

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA   76 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v   76 (563)
                      +|.++++|+.||+|++||+ +++.+.++.+|.+.|.+++|+|+| .+++|+.|++|++||  +++.+..+. |.+.|+++
T Consensus        24 ~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~  103 (814)
T 3mkq_A           24 TEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI  103 (814)
T ss_dssp             SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             CCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEE
Confidence            5789999999999999999 899999999999999999999999 999999999999999  888888888 99999999


Q ss_pred             EEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccccc---------ceeEEeeccCCceEEEeCCCCceeee----
Q 008510           77 KFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL---------SQYKLCRKKVGGLKLEDLPGLEALQI----  142 (563)
Q Consensus        77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v---------~~~~~~~~~~~~i~~~d~~~~~~l~~----  142 (563)
                      +|+|+|. +++|+.||.|++||++++... ...+..+...+         ....+++..++.|++||+.+......    
T Consensus       104 ~~s~~~~~l~~~~~dg~i~vw~~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~  182 (814)
T 3mkq_A          104 AVHPTKPYVLSGSDDLTVKLWNWENNWAL-EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG  182 (814)
T ss_dssp             EECSSSSEEEEEETTSEEEEEEGGGTSEE-EEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECC
T ss_pred             EEeCCCCEEEEEcCCCEEEEEECCCCceE-EEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecC
Confidence            9999998 999999999999999887322 11222222222         23555677889999999975543222    


Q ss_pred             --------cccC--CCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeee
Q 008510          143 --------PGTN--AGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRK  211 (563)
Q Consensus       143 --------~g~~--dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~  211 (563)
                              ..++  +|...+..+.+ +.+.+|+...+...               ..+.+|. +.|..+.+ ++|..++.
T Consensus       183 ~~~~v~~~~~~~~~~~~~l~~~~~d-g~i~~~d~~~~~~~---------------~~~~~~~-~~v~~~~~~~~~~~l~~  245 (814)
T 3mkq_A          183 QERGVNYVDYYPLPDKPYMITASDD-LTIKIWDYQTKSCV---------------ATLEGHM-SNVSFAVFHPTLPIIIS  245 (814)
T ss_dssp             CTTCCCEEEECCSTTCCEEEEECTT-SEEEEEETTTTEEE---------------EEEECCS-SCEEEEEECSSSSEEEE
T ss_pred             CCCCEEEEEEEECCCCCEEEEEeCC-CEEEEEECCCCcEE---------------EEEcCCC-CCEEEEEEcCCCCEEEE
Confidence                    1223  56555555444 56778887665321               1233343 55777777 77877888


Q ss_pred             ecCCCCCChhHHHH
Q 008510          212 LPYNRSDNPYDAAD  225 (563)
Q Consensus       212 ~~~n~~~~~w~~a~  225 (563)
                      +..|+.+.+|+...
T Consensus       246 ~~~dg~v~vwd~~~  259 (814)
T 3mkq_A          246 GSEDGTLKIWNSST  259 (814)
T ss_dssp             EETTSCEEEEETTT
T ss_pred             EeCCCeEEEEECCC
Confidence            88888888887653

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.78  E-value=4.4e-17  Score=166.42  Aligned_cols=220  Identities=10%  Similarity=0.038  Sum_probs=157.0

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEE--EecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCc---eeEEEe--cC
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLME--MVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGV---CVQSIE--HP   70 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~--l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~---~~~~l~--h~   70 (563)
                      +|++|++|+.||+|++||+ +++....  +.+|...|.+++|+|++ .+++++.|+.|++||  .+.   ....+.  |.
T Consensus        63 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~  142 (372)
T 1k8k_C           63 DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIR  142 (372)
T ss_dssp             TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCC
T ss_pred             CCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccC
Confidence            5789999999999999999 6664443  47899999999999999 999999999999999  444   234443  78


Q ss_pred             CcEEEEEEccCCc-EEEEeCCCcEEEEEcC------------------CCceeceeeecccccccc--------eeEEee
Q 008510           71 GCVWDAKFLENGD-IVTACSDGVTRIWTVH------------------SDKVADSLELEAYASELS--------QYKLCR  123 (563)
Q Consensus        71 ~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~------------------~~~~~~~~~~~~~~~~v~--------~~~~~~  123 (563)
                      ..|.+++|+|+++ +++|+.||.|++||++                  .++...  .+..+...+.        ...+++
T Consensus       143 ~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~  220 (372)
T 1k8k_C          143 STVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMF--ESSSSCGWVHGVCFSANGSRVAWV  220 (372)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEE--ECCCCSSCEEEEEECSSSSEEEEE
T ss_pred             CCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheE--ecCCCCCeEEEEEECCCCCEEEEE
Confidence            8999999999998 9999999999999964                  333221  2222222222        355677


Q ss_pred             ccCCceEEEeCCCCceeeec-----------ccCCCeEEEEecCCCeEEEEEeccc--ceEEEeCcEeeCCC--------
Q 008510          124 KKVGGLKLEDLPGLEALQIP-----------GTNAGQTKVVREGDNGVAYSWDMKE--QKWDKLGEVVDGPD--------  182 (563)
Q Consensus       124 ~~~~~i~~~d~~~~~~l~~~-----------g~~dg~~~l~~~~~~~~~~~wd~~~--~~w~~~g~v~~~~~--------  182 (563)
                      ..++.|++||+...+.+...           .+++|.+.+..  .++.+++|+...  +.|..+........        
T Consensus       221 ~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (372)
T 1k8k_C          221 SHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG--HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTA  298 (372)
T ss_dssp             ETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE--TTSSCEEEEEETTTTEEEECCCCCCC--------CH
T ss_pred             eCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE--eCCeEEEEEccCcCceEEEeeccCccccchhhhcch
Confidence            78899999999766544322           34455544443  334557888877  88876644322100        


Q ss_pred             ---------CCCC-------ceeecCcccCcEEEEEc--CCC---CeeeeecCCCCCChhHHHHH
Q 008510          183 ---------DGMN-------RPILDGIQYDYVFDVDI--GDG---EPTRKLPYNRSDNPYDAADK  226 (563)
Q Consensus       183 ---------~~~~-------~~~~~g~~~d~v~~vd~--~dg---~~~~~~~~n~~~~~w~~a~~  226 (563)
                               .+..       ..+..||. +.|.++.+  ++|   ..+++++.|+.+++|++...
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~  362 (372)
T 1k8k_C          299 RERFQNLDKKASSEGSAAAGAGLDSLHK-NSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL  362 (372)
T ss_dssp             HHHHHHCCCCC---------CCCSSSSS-SCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred             hhhhhhcccccccccCcccccccccccc-CCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence                     0000       22334776 78999985  677   89999999999999998653

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.78  E-value=2.1e-18  Score=185.94  Aligned_cols=220  Identities=10%  Similarity=0.015  Sum_probs=145.9

Q ss_pred             CCEEEEEECCCcEEEEcC-CCc-----------eeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CC-ceeEEE
Q 008510            3 GVGIISASHDCTIRLWAL-TGQ-----------VLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DG-VCVQSI   67 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~-----------~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~-~~~~~l   67 (563)
                      +.+|||||.||+||+||+ .++           +..++.+|...|++++|+|++.|++|+.||+|++||  ++ .....+
T Consensus       225 ~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~  304 (524)
T 2j04_B          225 VGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYD  304 (524)
T ss_dssp             SCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEE
T ss_pred             CceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEe
Confidence            579999999999999999 443           234788999999999999877999999999999999  44 345566


Q ss_pred             e-cCCcEEEE--EEccCC-c-EEEEeCCCcEEEEEcCCCceeceeeec-------cccccc-ceeEEeeccCCceEEEeC
Q 008510           68 E-HPGCVWDA--KFLENG-D-IVTACSDGVTRIWTVHSDKVADSLELE-------AYASEL-SQYKLCRKKVGGLKLEDL  134 (563)
Q Consensus        68 ~-h~~~V~~v--~~~p~g-~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~-------~~~~~v-~~~~~~~~~~~~i~~~d~  134 (563)
                      . |...|++|  +|+|+| . ++|||.|++||+||+++++......-.       ...-.. ....+++..++.|++||+
T Consensus       305 ~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~  384 (524)
T 2j04_B          305 QVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPS  384 (524)
T ss_dssp             ECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEET
T ss_pred             ecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEEC
Confidence            6 99999999  567887 6 899999999999999887643221100       001011 234556677889999999


Q ss_pred             CCCcee-----------eecccCCCeEEEEecCCCeEEEEEecccce----------------EEEe----CcEeeCCC-
Q 008510          135 PGLEAL-----------QIPGTNAGQTKVVREGDNGVAYSWDMKEQK----------------WDKL----GEVVDGPD-  182 (563)
Q Consensus       135 ~~~~~l-----------~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~----------------w~~~----g~v~~~~~-  182 (563)
                      +....+           .+..+++|...+..+.| +.+.+|+...+.                |...    +.++.... 
T Consensus       385 ~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~D-gtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~  463 (524)
T 2j04_B          385 RAAFAVHPLVSRETTITAIGVSRLHPMVLAGSAD-GSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSS  463 (524)
T ss_dssp             TCTTCCEEEEECSSCEEEEECCSSCCBCEEEETT-TEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCC
T ss_pred             cccccceeeecCCCceEEEEeCCCCCeEEEEECC-CEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCC
Confidence            876432           22255566655544444 556677743221                1110    11110000 


Q ss_pred             --------CCCCceeecCcccCcEEEEEc-CCC---CeeeeecCCCCCChhHHH
Q 008510          183 --------DGMNRPILDGIQYDYVFDVDI-GDG---EPTRKLPYNRSDNPYDAA  224 (563)
Q Consensus       183 --------~~~~~~~~~g~~~d~v~~vd~-~dg---~~~~~~~~n~~~~~w~~a  224 (563)
                              .+.....+.||. ..|++|.| +++   ..++.+..++.+++|+..
T Consensus       464 ~~~~~~~~~g~~~~~l~gh~-~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~  516 (524)
T 2j04_B          464 YEVYPLTVNDVSKAKIDAHG-INITCTKWNETSAGGKCYAFSNSAGLLTLEYLS  516 (524)
T ss_dssp             CCCCC-------------CC-CSCCCEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred             ceecccccCCcceeeecCCC-ceEEEEECCCCCCccHHHHhhccCceEEEEEcc
Confidence                    011123355565 67899999 774   478899999999999864

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.77  E-value=2.2e-17  Score=196.25  Aligned_cols=220  Identities=17%  Similarity=0.232  Sum_probs=166.8

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA   76 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v   76 (563)
                      +|+++++|+.||+|++||+ +++++.++.+|.+.|.+++|+|+| .+++|+.|++|+|||  +++++.++. |...|+++
T Consensus       626 ~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~  705 (1249)
T 3sfz_A          626 DGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCC  705 (1249)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEE
Confidence            5789999999999999999 899999999999999999999999 999999999999999  889999998 88999999


Q ss_pred             EEccCC--c-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCCcee-----
Q 008510           77 KFLENG--D-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLEAL-----  140 (563)
Q Consensus        77 ~~~p~g--~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~~l-----  140 (563)
                      +|+|++  . +++|+.||.|++||+++++...  .+..+...+.        ...+++..++.|++||+......     
T Consensus       706 ~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~--~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~  783 (1249)
T 3sfz_A          706 HFTNKSNHLLLATGSNDFFLKLWDLNQKECRN--TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINV  783 (1249)
T ss_dssp             EECSSSSCCEEEEEETTSCEEEEETTSSSEEE--EECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEEC
T ss_pred             EEecCCCceEEEEEeCCCeEEEEECCCcchhh--eecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecc
Confidence            999954  3 7899999999999999987443  3334444333        34556778899999998755322     


Q ss_pred             -------------------eecccCCCeEEEEecCCCeEEEEEecccceEEEe-----------------CcE-eeCCCC
Q 008510          141 -------------------QIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKL-----------------GEV-VDGPDD  183 (563)
Q Consensus       141 -------------------~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~-----------------g~v-~~~~~~  183 (563)
                                         ....+++|...++...  +.+++|+...+.....                 +.. +.+..+
T Consensus       784 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~--~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d  861 (1249)
T 3sfz_A          784 KRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK--NKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQ  861 (1249)
T ss_dssp             CCCC--------CCCCCBCCCCBCTTSSEEEEEET--TEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSS
T ss_pred             cccccccCCccccccceEEEEEECCCCCEEEEEcC--CcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCC
Confidence                               1235677777666653  4566787665543221                 111 011011


Q ss_pred             C----------CCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHHHH
Q 008510          184 G----------MNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAADK  226 (563)
Q Consensus       184 ~----------~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~~  226 (563)
                      +          .....+.||. +.|.++.+ ++|..+++.+.|+.+++|+....
T Consensus       862 g~v~vwd~~~~~~~~~~~~h~-~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~  914 (1249)
T 3sfz_A          862 YCVELWNIDSRLKVADCRGHL-SWVHGVMFSPDGSSFLTASDDQTIRVWETKKV  914 (1249)
T ss_dssp             SCEEEEETTTTEEEEEECCCS-SCEEEEEECTTSSEEEEEETTSCEEEEEHHHH
T ss_pred             CeEEEEEcCCCceeeecCCCc-cceEEEEECCCCCEEEEEeCCCeEEEEEcccc
Confidence            0          0112345555 77999999 89999999999999999998754

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.77  E-value=4.1e-18  Score=177.60  Aligned_cols=205  Identities=12%  Similarity=0.061  Sum_probs=155.0

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA   76 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v   76 (563)
                      +|+++++|+.|++|++||. +++....+.+| ..+....++|++ .+++|+.|++|++||  .+++.+.+. |...|+++
T Consensus        67 ~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~  145 (420)
T 3vl1_A           67 VGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKL  145 (420)
T ss_dssp             EETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEE
T ss_pred             cCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEE
Confidence            3678999999999999999 66666666666 555566788998 999999999999999  667777665 99999999


Q ss_pred             EEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCCceeeec----
Q 008510           77 KFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLEALQIP----  143 (563)
Q Consensus        77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~~l~~~----  143 (563)
                      +|+|+|+ +++|+.|+.|++||+++++...  .+..+...+.        ...+++..++.|++||+...+.+...    
T Consensus       146 ~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~  223 (420)
T 3vl1_A          146 KFFPSGEALISSSQDMQLKIWSVKDGSNPR--TLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKE  223 (420)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTCCCCE--EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTT
T ss_pred             EECCCCCEEEEEeCCCeEEEEeCCCCcCce--EEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCC
Confidence            9999998 9999999999999999887432  3334444333        34556778899999999876554332    


Q ss_pred             -------------------------------ccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecC
Q 008510          144 -------------------------------GTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDG  192 (563)
Q Consensus       144 -------------------------------g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g  192 (563)
                                                     .+++|...+..+.+ +.+++||...+...               ..+..
T Consensus       224 ~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~i~d~~~~~~~---------------~~~~~  287 (420)
T 3vl1_A          224 NPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVS-GVITVHNVFSKEQT---------------IQLPS  287 (420)
T ss_dssp             BTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETT-SCEEEEETTTCCEE---------------EEECC
T ss_pred             CCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCC-CeEEEEECCCCcee---------------EEccc
Confidence                                           24567776666655 55678887654311               11222


Q ss_pred             cccCcEEEEEc-CCCC-eeeeecCCCCCChhHHHH
Q 008510          193 IQYDYVFDVDI-GDGE-PTRKLPYNRSDNPYDAAD  225 (563)
Q Consensus       193 ~~~d~v~~vd~-~dg~-~~~~~~~n~~~~~w~~a~  225 (563)
                      .+...|.++.+ ++|. .++.+..|+.+.+|++..
T Consensus       288 ~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~  322 (420)
T 3vl1_A          288 KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRS  322 (420)
T ss_dssp             TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred             ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCC
Confidence            22367999999 8887 899999999999999853

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.76  E-value=1.8e-18  Score=182.16  Aligned_cols=185  Identities=10%  Similarity=0.099  Sum_probs=131.1

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCc--eeEEEecCCCcEEEEEEcC-CC-eEEEEeCCCcEEEEc-CCceeEEEe----cCC
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQ--VLMEMVGHTAIVYSIDSHA-SG-LIVSGSEDRFAKIWK-DGVCVQSIE----HPG   71 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~--~i~~l~gH~~~V~~v~~~p-~g-~l~s~s~D~tvriWd-~~~~~~~l~----h~~   71 (563)
                      ++++||+|+.||+|+|||+ +++  ....+.||.+.|++++|+| ++ .|+|||.|++|++|| .+.....+.    +..
T Consensus       131 ~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~  210 (435)
T 4e54_B          131 HPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINI  210 (435)
T ss_dssp             CTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSC
T ss_pred             CCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCc
Confidence            3568999999999999999 444  4555679999999999998 56 999999999999999 767666665    233


Q ss_pred             cEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceeeecccCCCeE
Q 008510           72 CVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQT  150 (563)
Q Consensus        72 ~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg~~  150 (563)
                      .+.+++|+|+|. +++|+.||.|++||++....   ..+..|...+                       ..+..++++..
T Consensus       211 ~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~---~~~~~h~~~v-----------------------~~v~~~p~~~~  264 (435)
T 4e54_B          211 WFCSLDVSASSRMVVTGDNVGNVILLNMDGKEL---WNLRMHKKKV-----------------------THVALNPCCDW  264 (435)
T ss_dssp             CCCCEEEETTTTEEEEECSSSBEEEEESSSCBC---CCSBCCSSCE-----------------------EEEEECTTCSS
T ss_pred             cEEEEEECCCCCEEEEEeCCCcEeeeccCccee---EEEecccceE-----------------------EeeeecCCCce
Confidence            678999999998 89999999999999975431   1222232222                       22223444444


Q ss_pred             EEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHHH
Q 008510          151 KVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAAD  225 (563)
Q Consensus       151 ~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~  225 (563)
                      .++..+.++.+.+||.......  .          ......+|. +.|.++.| ++|..+++.+.|+.+++|++.+
T Consensus       265 ~~~s~s~d~~v~iwd~~~~~~~--~----------~~~~~~~h~-~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~  327 (435)
T 4e54_B          265 FLATASVDQTVKIWDLRQVRGK--A----------SFLYSLPHR-HPVNAACFSPDGARLLTTDQKSEIRVYSASQ  327 (435)
T ss_dssp             EEEEEETTSBCCEEETTTCCSS--S----------CCSBCCBCS-SCEEECCBCTTSSEEEEEESSSCEEEEESSS
T ss_pred             EEEEecCcceeeEEeccccccc--c----------eEEEeeecc-ccccceeECCCCCeeEEEcCCCEEEEEECCC
Confidence            4433333355566775443100  0          111123444 67899999 8999999999999999999753

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.76  E-value=4.2e-17  Score=163.81  Aligned_cols=202  Identities=12%  Similarity=0.176  Sum_probs=149.8

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCc---eeEEEe--cCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCc--eeEEEe-c
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQ---VLMEMV--GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGV--CVQSIE-H   69 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~---~i~~l~--gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~--~~~~l~-h   69 (563)
                      +|+++++++ ||+|++|++ +++   .+..+.  +|...|.+++|+|++ .+++++.|++|++||  +++  ....+. |
T Consensus        62 ~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~  140 (337)
T 1gxr_A           62 PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSS  140 (337)
T ss_dssp             SSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECS
T ss_pred             CCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccC
Confidence            478899988 999999999 443   344444  899999999999999 899999999999999  444  445555 7


Q ss_pred             CCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCCcee
Q 008510           70 PGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLEAL  140 (563)
Q Consensus        70 ~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~~l  140 (563)
                      ...|++++|+|+++ +++++.||.|++||+++++...  .+..+...+.        ...+++..++.+++||+...+.+
T Consensus       141 ~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~  218 (337)
T 1gxr_A          141 APACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR--QFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQL  218 (337)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE--EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceee--eeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceE
Confidence            88999999999998 8999999999999999887443  2223333222        34556778899999999877654


Q ss_pred             eec----------ccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCee
Q 008510          141 QIP----------GTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPT  209 (563)
Q Consensus       141 ~~~----------g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~  209 (563)
                      ...          .+++|...++.+.+ +.+++|+...+.                ...+.++. +.|.++.+ ++|+.+
T Consensus       219 ~~~~~~~~v~~~~~s~~~~~l~~~~~~-~~i~~~~~~~~~----------------~~~~~~~~-~~v~~~~~~~~~~~l  280 (337)
T 1gxr_A          219 QQHDFTSQIFSLGYCPTGEWLAVGMES-SNVEVLHVNKPD----------------KYQLHLHE-SCVLSLKFAYCGKWF  280 (337)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEEETT-SCEEEEETTSSC----------------EEEECCCS-SCEEEEEECTTSSEE
T ss_pred             eeecCCCceEEEEECCCCCEEEEEcCC-CcEEEEECCCCC----------------eEEEcCCc-cceeEEEECCCCCEE
Confidence            433          34555555554444 345567654432                12234444 66899999 899999


Q ss_pred             eeecCCCCCChhHHH
Q 008510          210 RKLPYNRSDNPYDAA  224 (563)
Q Consensus       210 ~~~~~n~~~~~w~~a  224 (563)
                      +....|+.+.+|++.
T Consensus       281 ~~~~~dg~i~~~~~~  295 (337)
T 1gxr_A          281 VSTGKDNLLNAWRTP  295 (337)
T ss_dssp             EEEETTSEEEEEETT
T ss_pred             EEecCCCcEEEEECC
Confidence            999999999999874

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.76  E-value=1.4e-17  Score=168.92  Aligned_cols=221  Identities=13%  Similarity=0.182  Sum_probs=150.9

Q ss_pred             CCEEEEEECCCcEEEEcC-CCc-eeEEEecCCCcEEEEEE------cCCC-eEEEEeCCCcEEEEc--CCc-eeEEEe-c
Q 008510            3 GVGIISASHDCTIRLWAL-TGQ-VLMEMVGHTAIVYSIDS------HASG-LIVSGSEDRFAKIWK--DGV-CVQSIE-H   69 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~-~i~~l~gH~~~V~~v~~------~p~g-~l~s~s~D~tvriWd--~~~-~~~~l~-h   69 (563)
                      |++|++|+.||+|++||+ +++ ++..+.+|...|.+++|      +|++ .+++|+.|++|++||  +++ .+..+. |
T Consensus        80 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~  159 (357)
T 3i2n_A           80 QRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPV  159 (357)
T ss_dssp             TCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCC
T ss_pred             CceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceecccc
Confidence            689999999999999999 666 88999999999999965      6778 999999999999999  444 677776 3


Q ss_pred             CC----cEEEEE----EccCCc-EEEEeCCCcEEEEEcCCCceeceee----ecccccc----cceeEEeeccCCceEEE
Q 008510           70 PG----CVWDAK----FLENGD-IVTACSDGVTRIWTVHSDKVADSLE----LEAYASE----LSQYKLCRKKVGGLKLE  132 (563)
Q Consensus        70 ~~----~V~~v~----~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~----~~~~~~~----v~~~~~~~~~~~~i~~~  132 (563)
                      .+    .|++++    |+|++. +++|+.||.|++||+++++......    +....-.    -....+++..++.|++|
T Consensus       160 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~  239 (357)
T 3i2n_A          160 QGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVF  239 (357)
T ss_dssp             TTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEE
T ss_pred             CCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEE
Confidence            33    899999    678888 8999999999999999987532211    1111111    23556677788999999


Q ss_pred             eCCCCcee----------------eecccCCCeEEEEecCCCeEEEEEecccceEEEe----CcEeeCCCCCCCceeecC
Q 008510          133 DLPGLEAL----------------QIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKL----GEVVDGPDDGMNRPILDG  192 (563)
Q Consensus       133 d~~~~~~l----------------~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~----g~v~~~~~~~~~~~~~~g  192 (563)
                      |++.....                ....+++|...++....++.+++|+...+.-...    +...+..+.......+.+
T Consensus       240 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  319 (357)
T 3i2n_A          240 DMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTL  319 (357)
T ss_dssp             EEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEEC
T ss_pred             eCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecccc
Confidence            98643221                1224455553333333345667777654321100    000000000001233556


Q ss_pred             cccCcEEEEEc-CCCCeee-eecCCCCCChhHHH
Q 008510          193 IQYDYVFDVDI-GDGEPTR-KLPYNRSDNPYDAA  224 (563)
Q Consensus       193 ~~~d~v~~vd~-~dg~~~~-~~~~n~~~~~w~~a  224 (563)
                      |. +.|.++.+ ++|+.++ +.+.|+.+++|++.
T Consensus       320 ~~-~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~  352 (357)
T 3i2n_A          320 ST-QPISSLDWSPDKRGLCVCSSFDQTVRVLIVT  352 (357)
T ss_dssp             CS-SCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred             CC-CCeeEEEEcCCCCeEEEEecCCCcEEEEECC
Confidence            65 77999999 8999888 89999999999874

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.76  E-value=2.1e-17  Score=170.83  Aligned_cols=137  Identities=25%  Similarity=0.370  Sum_probs=108.8

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeEEE-----ecCCCcEEEEEEcC-CC-eEEEEeCCCcEEEEc---CCceeEEEe-cC
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLMEM-----VGHTAIVYSIDSHA-SG-LIVSGSEDRFAKIWK---DGVCVQSIE-HP   70 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~~l-----~gH~~~V~~v~~~p-~g-~l~s~s~D~tvriWd---~~~~~~~l~-h~   70 (563)
                      +..|++||.|++|++||+ +++++..+     .+|...|.++++++ ++ .+++|+.|++|++||   .+.+++++. |.
T Consensus       170 ~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~  249 (380)
T 3iz6_a          170 ETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHE  249 (380)
T ss_dssp             SSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCS
T ss_pred             CCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcC
Confidence            457999999999999999 88888887     78999999999987 56 899999999999999   457788887 99


Q ss_pred             CcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccc-----c--------ccceeEEeeccCCceEEEeCCC
Q 008510           71 GCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYA-----S--------ELSQYKLCRKKVGGLKLEDLPG  136 (563)
Q Consensus        71 ~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~-----~--------~v~~~~~~~~~~~~i~~~d~~~  136 (563)
                      +.|++++|+|+|. +++|+.||+|++||+++++...........     .        .-....+++..++.|++||...
T Consensus       250 ~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~  329 (380)
T 3iz6_a          250 GDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLL  329 (380)
T ss_dssp             SCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTT
T ss_pred             CCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCC
Confidence            9999999999998 999999999999999998754322211100     0        0123445666777888888765


Q ss_pred             Cce
Q 008510          137 LEA  139 (563)
Q Consensus       137 ~~~  139 (563)
                      .+.
T Consensus       330 ~~~  332 (380)
T 3iz6_a          330 AEM  332 (380)
T ss_dssp             CCE
T ss_pred             Cce
Confidence            543

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.76  E-value=6.1e-18  Score=173.77  Aligned_cols=218  Identities=8%  Similarity=0.040  Sum_probs=141.1

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCc---eeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCc---eeEEEe--c
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQ---VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGV---CVQSIE--H   69 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~---~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~---~~~~l~--h   69 (563)
                      +|++|++|+.|++|++||+ +++   +...+.+|...|.+++|+|++ .+++|+.|++|++||  .++   +.+.+.  |
T Consensus        66 ~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h  145 (377)
T 3dwl_C           66 KSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPL  145 (377)
T ss_dssp             TTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSC
T ss_pred             CCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeeccc
Confidence            4789999999999999999 555   678888999999999999999 899999999999999  443   466676  8


Q ss_pred             CCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCcee----------------ceeeecccccccc--------eeEEeec
Q 008510           70 PGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVA----------------DSLELEAYASELS--------QYKLCRK  124 (563)
Q Consensus        70 ~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~----------------~~~~~~~~~~~v~--------~~~~~~~  124 (563)
                      ...|++++|+|+|. +++|+.|+.|++||++.....                ....+ .+...+.        ...+++.
T Consensus       146 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~  224 (377)
T 3dwl_C          146 RSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAG  224 (377)
T ss_dssp             CSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEE
T ss_pred             CCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEe
Confidence            88999999999998 999999999999998633210                11111 2332222        3455677


Q ss_pred             cCCceEEEeCCCCce----eee-----------cccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCC-----
Q 008510          125 KVGGLKLEDLPGLEA----LQI-----------PGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDG-----  184 (563)
Q Consensus       125 ~~~~i~~~d~~~~~~----l~~-----------~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~-----  184 (563)
                      .++.|++||+.....    +..           ..+++|.+.+... ++... +|+.....|...+.+.......     
T Consensus       225 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (377)
T 3dwl_C          225 HDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGY-NYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHT  302 (377)
T ss_dssp             TTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEES-SSSEE-EECCCC---CCSBCCCSCCCCCCBSSS
T ss_pred             CCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEc-CCcEE-EEEeCCCceEEEeeecccccccccccc
Confidence            889999999987654    222           1344555544443 33333 5555444444332221110000     


Q ss_pred             --------------------------------CCceeecCcccCcEEEEEc-C-CCC---eeeeecCCCCCChhHH
Q 008510          185 --------------------------------MNRPILDGIQYDYVFDVDI-G-DGE---PTRKLPYNRSDNPYDA  223 (563)
Q Consensus       185 --------------------------------~~~~~~~g~~~d~v~~vd~-~-dg~---~~~~~~~n~~~~~w~~  223 (563)
                                                      .......+|. +.|.++.+ + ++.   .+++.+.|+.+++|++
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~-~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          303 GNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQ-NMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             SSBCCCCCC-------------------------CCCSSSCS-SCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             cccccccccccccccccccccccchhhccccccccccCcccc-ceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence                                            0011122244 77888886 3 333   4899999999999974

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.76  E-value=2e-17  Score=186.67  Aligned_cols=212  Identities=16%  Similarity=0.201  Sum_probs=150.4

Q ss_pred             CCCEEEEEECCCcEEEEcC---CCceeEEEecCCCcEEEEEEcCC--C-eEEEEeCCCcEEEEc--CCc--eeEEEe-cC
Q 008510            2 PGVGIISASHDCTIRLWAL---TGQVLMEMVGHTAIVYSIDSHAS--G-LIVSGSEDRFAKIWK--DGV--CVQSIE-HP   70 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~---~g~~i~~l~gH~~~V~~v~~~p~--g-~l~s~s~D~tvriWd--~~~--~~~~l~-h~   70 (563)
                      +|+++++|+.||+|++||+   +++++.++.+|.+.|++++|+|+  + .+++|+.||+|++||  +++  .+..+. |.
T Consensus        20 dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~   99 (753)
T 3jro_A           20 YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHS   99 (753)
T ss_dssp             SSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCS
T ss_pred             CCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCC
Confidence            5788999999999999998   35678899999999999999987  7 899999999999999  554  556666 88


Q ss_pred             CcEEEEEEccC--Cc-EEEEeCCCcEEEEEcCCCceeceeeeccccccc---------------------ceeEEeeccC
Q 008510           71 GCVWDAKFLEN--GD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL---------------------SQYKLCRKKV  126 (563)
Q Consensus        71 ~~V~~v~~~p~--g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v---------------------~~~~~~~~~~  126 (563)
                      ..|++++|+|+  |. +++|+.||.|++||++++.......+..+...+                     ....+++..+
T Consensus       100 ~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~d  179 (753)
T 3jro_A          100 ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD  179 (753)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETT
T ss_pred             CCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECC
Confidence            89999999998  87 999999999999999887433333333332221                     3456677788


Q ss_pred             CceEEEeCCCCce----ee-ecccCCCeEEEEecCC------------CeEEEEEecccceEEEeCcEeeCCCCCCCcee
Q 008510          127 GGLKLEDLPGLEA----LQ-IPGTNAGQTKVVREGD------------NGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPI  189 (563)
Q Consensus       127 ~~i~~~d~~~~~~----l~-~~g~~dg~~~l~~~~~------------~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~  189 (563)
                      |.|++||++....    .. ..+|......+..+++            ++.+++|+...+.-.    .      ......
T Consensus       180 g~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~----~------~~~~~~  249 (753)
T 3jro_A          180 NLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP----W------KKTLLK  249 (753)
T ss_dssp             SCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSC----C------BCCBSS
T ss_pred             CeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCc----c------eeEEec
Confidence            9999999876521    11 1133333333333333            233455554332100    0      000111


Q ss_pred             ecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHH
Q 008510          190 LDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAA  224 (563)
Q Consensus       190 ~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a  224 (563)
                      ..++ .+.|.++.+ ++|..++.+..|+.+++|++.
T Consensus       250 ~~~~-~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~  284 (753)
T 3jro_A          250 EEKF-PDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (753)
T ss_dssp             SSCC-SSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred             cCCC-CCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence            1223 366888999 899999999999999999875

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.76  E-value=1.3e-17  Score=166.73  Aligned_cols=181  Identities=12%  Similarity=0.057  Sum_probs=125.3

Q ss_pred             CEEEEEE---CCCcEEEEcC--CCceeEEEecCCCcEEEEEEcC---CC-eEEEEeCCCcEEEEc--CCceeEEEe-cC-
Q 008510            4 VGIISAS---HDCTIRLWAL--TGQVLMEMVGHTAIVYSIDSHA---SG-LIVSGSEDRFAKIWK--DGVCVQSIE-HP-   70 (563)
Q Consensus         4 ~~l~s~s---~DgtIrlWd~--~g~~i~~l~gH~~~V~~v~~~p---~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~-   70 (563)
                      ..+++++   .|++|++|++  +|+.+..+.+|...++.++|+|   ++ .++|||.|++|||||  ++++++++. |. 
T Consensus       145 g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~  224 (356)
T 2w18_A          145 RRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDS  224 (356)
T ss_dssp             TEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC-
T ss_pred             CcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCc
Confidence            3444444   4999999999  5899999999999999999999   56 899999999999999  899999997 33 


Q ss_pred             --CcEEEEEEccCCc-E------------EEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCC
Q 008510           71 --GCVWDAKFLENGD-I------------VTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLP  135 (563)
Q Consensus        71 --~~V~~v~~~p~g~-i------------~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~  135 (563)
                        ..+.+++|+|+|. +            ++|+.|++|++||..+++.....                       .+.++
T Consensus       225 ~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~-----------------------~~~~p  281 (356)
T 2w18_A          225 YQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVM-----------------------LYCLP  281 (356)
T ss_dssp             --CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEE-----------------------EECCC
T ss_pred             ceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEE-----------------------Eeecc
Confidence              3788889999998 4            56888999999999988744211                       11111


Q ss_pred             CCce-eeecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeec
Q 008510          136 GLEA-LQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLP  213 (563)
Q Consensus       136 ~~~~-l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~  213 (563)
                      .+.. ....++.+|...+..+.| +.+.+||..+++..               ..+.||....+..+.| +||+.+++++
T Consensus       282 ~Gh~~~~lsg~~sg~~lASgS~D-gTIkIWDl~tGk~l---------------~tL~gH~~~vvs~vafSPDG~~LaSGS  345 (356)
T 2w18_A          282 PGQAGRFLEGDVKDHCAAAILTS-GTIAIWDLLLGQCT---------------ALLPPVSDQHWSFVKWSGTDSHLLAGQ  345 (356)
T ss_dssp             TTCCCCEEEEEEETTEEEEEETT-SCEEEEETTTCSEE---------------EEECCC--CCCCEEEECSSSSEEEEEC
T ss_pred             CCCcceeEccccCCCEEEEEcCC-CcEEEEECCCCcEE---------------EEecCCCCCeEEEEEECCCCCEEEEEE
Confidence            1110 011233334444444444 45677887665422               2355665233335889 9999999999


Q ss_pred             CCCCCChhHH
Q 008510          214 YNRSDNPYDA  223 (563)
Q Consensus       214 ~n~~~~~w~~  223 (563)
                      .|+++++|++
T Consensus       346 ~D~TIklWd~  355 (356)
T 2w18_A          346 KDGNIFVYHY  355 (356)
T ss_dssp             TTSCEEEEEE
T ss_pred             CCCcEEEecC
Confidence            9999999974

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.76  E-value=2.8e-17  Score=172.98  Aligned_cols=211  Identities=19%  Similarity=0.303  Sum_probs=150.6

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCcee---EEEe-cCCcEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCV---QSIE-HPGCVW   74 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~---~~l~-h~~~V~   74 (563)
                      +++++++|+.||+|++||+ +++++.++.+|...|.+++|+++ .+++|+.|++|++||  ++...   ..+. |...|.
T Consensus       182 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~  260 (435)
T 1p22_A          182 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG-MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN  260 (435)
T ss_dssp             CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTT-EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCC-EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEE
Confidence            5789999999999999999 89999999999999999999754 899999999999999  44444   4444 888999


Q ss_pred             EEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc------eeEEeeccCCceEEEeCCCCceeeec-ccC
Q 008510           75 DAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS------QYKLCRKKVGGLKLEDLPGLEALQIP-GTN  146 (563)
Q Consensus        75 ~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~------~~~~~~~~~~~i~~~d~~~~~~l~~~-g~~  146 (563)
                      +++|  ++. +++|+.||.|++||+++++....  +..+...+.      ...+++..++.|++||+.....+... ++.
T Consensus       261 ~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~  336 (435)
T 1p22_A          261 VVDF--DDKYIVSASGDRTIKVWNTSTCEFVRT--LNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHE  336 (435)
T ss_dssp             EEEE--ETTEEEEEETTSEEEEEETTTCCEEEE--EECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred             EEEe--CCCEEEEEeCCCeEEEEECCcCcEEEE--EcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCc
Confidence            9999  556 99999999999999999875432  333333332      45567788999999999877665443 444


Q ss_pred             CC--------eEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEcCCCCeeeeecCCCCC
Q 008510          147 AG--------QTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSD  218 (563)
Q Consensus       147 dg--------~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~~dg~~~~~~~~n~~~  218 (563)
                      ..        ...+..+.+ +.+.+||...+.-      ............+.+|. +.|.++.+ +|..+++++.|+.+
T Consensus       337 ~~v~~~~~~~~~l~sg~~d-g~i~vwd~~~~~~------~~~~~~~~~~~~~~~h~-~~v~~l~~-~~~~l~s~s~Dg~i  407 (435)
T 1p22_A          337 ELVRCIRFDNKRIVSGAYD-GKIKVWDLVAALD------PRAPAGTLCLRTLVEHS-GRVFRLQF-DEFQIVSSSHDDTI  407 (435)
T ss_dssp             SCEEEEECCSSEEEEEETT-SCEEEEEHHHHTS------TTSCTTTTEEEEECCCS-SCCCCEEE-CSSCEEECCSSSEE
T ss_pred             CcEEEEEecCCEEEEEeCC-CcEEEEECCCCCC------ccccccchheeeccCCC-CCeEEEEe-CCCEEEEEeCCCEE
Confidence            33        333333333 4455666543310      00000000123355665 67888888 78889999999999


Q ss_pred             ChhHHHHH
Q 008510          219 NPYDAADK  226 (563)
Q Consensus       219 ~~w~~a~~  226 (563)
                      .+|++...
T Consensus       408 ~iwd~~~~  415 (435)
T 1p22_A          408 LIWDFLND  415 (435)
T ss_dssp             EEEC----
T ss_pred             EEEECCCC
Confidence            99998654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.76  E-value=8e-17  Score=167.11  Aligned_cols=205  Identities=17%  Similarity=0.250  Sum_probs=149.8

Q ss_pred             CCC-EEEEEECCCcEEEEcC----C-Cc------eeEEEec----------CCCcEEEEEEcCCC-eEEEEeCCCcEEEE
Q 008510            2 PGV-GIISASHDCTIRLWAL----T-GQ------VLMEMVG----------HTAIVYSIDSHASG-LIVSGSEDRFAKIW   58 (563)
Q Consensus         2 ~g~-~l~s~s~DgtIrlWd~----~-g~------~i~~l~g----------H~~~V~~v~~~p~g-~l~s~s~D~tvriW   58 (563)
                      +|+ +|++|+.||+|++|++    . ++      ....+..          |.+.|++++|+|++ .+++|+.|++|++|
T Consensus        56 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~  135 (425)
T 1r5m_A           56 LDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLW  135 (425)
T ss_dssp             SCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             CCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEE
Confidence            467 9999999999999998    4 44      3444544          78899999999999 99999999999999


Q ss_pred             c-CCceeEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecc--------------------cccc
Q 008510           59 K-DGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEA--------------------YASE  115 (563)
Q Consensus        59 d-~~~~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~--------------------~~~~  115 (563)
                      + +++.+..+. |...|++++|+|+++ +++++.||.|++||+++++.........                    ..-.
T Consensus       136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (425)
T 1r5m_A          136 NKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWV  215 (425)
T ss_dssp             ETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEE
T ss_pred             eCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEc
Confidence            9 888888888 888999999999998 9999999999999999887543322211                    1111


Q ss_pred             cceeEEeeccCCceEEEeCCCCceeeec-cc----------CCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCC
Q 008510          116 LSQYKLCRKKVGGLKLEDLPGLEALQIP-GT----------NAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDG  184 (563)
Q Consensus       116 v~~~~~~~~~~~~i~~~d~~~~~~l~~~-g~----------~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~  184 (563)
                      .....+++..++.|.+||+.....+... ++          +++...+..+.+ +.+++|+...+.              
T Consensus       216 ~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~~i~i~d~~~~~--------------  280 (425)
T 1r5m_A          216 DDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDD-GTLRIWHGGNGN--------------  280 (425)
T ss_dssp             ETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETT-SCEEEECSSSBS--------------
T ss_pred             CCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCC-CEEEEEECCCCc--------------
Confidence            2244567778899999999876544332 33          344433333333 344566654321              


Q ss_pred             CCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHH
Q 008510          185 MNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAA  224 (563)
Q Consensus       185 ~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a  224 (563)
                       ....+.++. ..|.++.+ ++| .++....|+.+.+|+..
T Consensus       281 -~~~~~~~~~-~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~  318 (425)
T 1r5m_A          281 -SQNCFYGHS-QSIVSASWVGDD-KVISCSMDGSVRLWSLK  318 (425)
T ss_dssp             -CSEEECCCS-SCEEEEEEETTT-EEEEEETTSEEEEEETT
T ss_pred             -cceEecCCC-ccEEEEEECCCC-EEEEEeCCCcEEEEECC
Confidence             233455554 67899999 788 89999999999999974

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.75  E-value=3.9e-17  Score=169.79  Aligned_cols=205  Identities=18%  Similarity=0.147  Sum_probs=145.4

Q ss_pred             EEEEECCCcEEEEcC-C-C---ceeEEEecCCCcEEEEEEcC-CC-eEEEEeCCCcEEEEc--CC-------ceeEEEe-
Q 008510            6 IISASHDCTIRLWAL-T-G---QVLMEMVGHTAIVYSIDSHA-SG-LIVSGSEDRFAKIWK--DG-------VCVQSIE-   68 (563)
Q Consensus         6 l~s~s~DgtIrlWd~-~-g---~~i~~l~gH~~~V~~v~~~p-~g-~l~s~s~D~tvriWd--~~-------~~~~~l~-   68 (563)
                      +++|+.||.|++|++ . +   ..+..+.+|.+.|++++|+| ++ .+++|+.|++|++|+  ++       +++..+. 
T Consensus        50 ~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~  129 (402)
T 2aq5_A           50 ICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEG  129 (402)
T ss_dssp             EBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEEC
T ss_pred             EEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecC
Confidence            446889999999998 3 3   34567889999999999999 77 999999999999999  44       5677777 


Q ss_pred             cCCcEEEEEEccCC-c-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCCc
Q 008510           69 HPGCVWDAKFLENG-D-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLE  138 (563)
Q Consensus        69 h~~~V~~v~~~p~g-~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~  138 (563)
                      |...|++++|+|+| . +++|+.||.|++||+++++.........+...+.        ...+++..++.|++||++..+
T Consensus       130 h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  209 (402)
T 2aq5_A          130 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT  209 (402)
T ss_dssp             CSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE
T ss_pred             CCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCc
Confidence            99999999999998 4 8999999999999999987543321133443333        345567788999999998765


Q ss_pred             eeeec-------------ccCCCeEEEEec--CCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc
Q 008510          139 ALQIP-------------GTNAGQTKVVRE--GDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI  203 (563)
Q Consensus       139 ~l~~~-------------g~~dg~~~l~~~--~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~  203 (563)
                      .+...             .+++|.+.+...  ..++.+++||...+.-              ............+..+.+
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~~~~  275 (402)
T 2aq5_A          210 VVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEE--------------PLSLQELDTSSGVLLPFF  275 (402)
T ss_dssp             EEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSS--------------CSEEEECCCCSSCEEEEE
T ss_pred             eeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccC--------------CceEEeccCCCceeEEEE
Confidence            54332             233444444331  2345566777544310              011111112245788888


Q ss_pred             -CCCCeee-eecCCCCCChhHHH
Q 008510          204 -GDGEPTR-KLPYNRSDNPYDAA  224 (563)
Q Consensus       204 -~dg~~~~-~~~~n~~~~~w~~a  224 (563)
                       ++|..++ ....|+.+.+|++.
T Consensus       276 s~~~~~l~~~g~~dg~i~i~d~~  298 (402)
T 2aq5_A          276 DPDTNIVYLCGKGDSSIRYFEIT  298 (402)
T ss_dssp             ETTTTEEEEEETTCSCEEEEEEC
T ss_pred             cCCCCEEEEEEcCCCeEEEEEec
Confidence             8888775 45578999999875

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.75  E-value=7.7e-17  Score=166.41  Aligned_cols=220  Identities=14%  Similarity=0.083  Sum_probs=159.6

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEe-------------cCCCcEEEEEEcC-CC-eEEEEeCCCcEEEEc--CCce
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMV-------------GHTAIVYSIDSHA-SG-LIVSGSEDRFAKIWK--DGVC   63 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~-------------gH~~~V~~v~~~p-~g-~l~s~s~D~tvriWd--~~~~   63 (563)
                      +|++|++|+.||+|++||+ +++....+.             +|...|.+++|+| ++ .+++++.|++|++||  +++.
T Consensus        55 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  134 (408)
T 4a11_B           55 EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT  134 (408)
T ss_dssp             TCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc
Confidence            5889999999999999999 555544443             6999999999999 55 899999999999999  7788


Q ss_pred             eEEEecCCcEEEEEEccC---Cc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------e-eEEeeccCCceE
Q 008510           64 VQSIEHPGCVWDAKFLEN---GD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------Q-YKLCRKKVGGLK  130 (563)
Q Consensus        64 ~~~l~h~~~V~~v~~~p~---g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~-~~~~~~~~~~i~  130 (563)
                      +..+.+...+.++.++|.   +. +++|+.||.|++||+++++...  .+..+...+.        . ..+++..++.|+
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~  212 (408)
T 4a11_B          135 ADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSH--ILQGHRQEILAVSWSPRYDYILATASADSRVK  212 (408)
T ss_dssp             EEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCE--EECCCCSCEEEEEECSSCTTEEEEEETTSCEE
T ss_pred             ceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceee--eecCCCCcEEEEEECCCCCcEEEEEcCCCcEE
Confidence            888888889999999984   34 8999999999999999876432  2233333222        2 456788899999


Q ss_pred             EEeCCCCc---------------------------eeeecccCCCeEEEEecCCCeEEEEEecccceEEEeC--------
Q 008510          131 LEDLPGLE---------------------------ALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLG--------  175 (563)
Q Consensus       131 ~~d~~~~~---------------------------~l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g--------  175 (563)
                      +||++...                           +.....+++|...+..+.+ +.+++|+...+......        
T Consensus       213 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~~~~~~  291 (408)
T 4a11_B          213 LWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTD-NRMRLWNSSNGENTLVNYGKVCNNS  291 (408)
T ss_dssp             EEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETT-SCEEEEETTTCCBCCCCCCCCCCCC
T ss_pred             EEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCC-CeEEEEECCCCccceeccccccccc
Confidence            99996432                           2223356677766666655 45678987665321110        


Q ss_pred             --------------cEeeCC----------CCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHHH
Q 008510          176 --------------EVVDGP----------DDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAAD  225 (563)
Q Consensus       176 --------------~v~~~~----------~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~  225 (563)
                                    .+....          ..+.....+.+|. +.|.++.+ ++|..++++..|+.+.+|++..
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~  365 (408)
T 4a11_B          292 KKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHY-KTVDCCVFQSNFQELYSGSRDCNILAWVPSL  365 (408)
T ss_dssp             SSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCS-SCEEEEEEETTTTEEEEEETTSCEEEEEECC
T ss_pred             cccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCC-CeEEEEEEcCCCCEEEEECCCCeEEEEeCCC
Confidence                          000000          0011223355665 77999999 9999999999999999999864

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.75  E-value=1.8e-17  Score=174.03  Aligned_cols=206  Identities=13%  Similarity=0.206  Sum_probs=145.2

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCc-----------eeEEEecCC------------CcEEEEEEcCCC---eEEEEeCCCc
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQ-----------VLMEMVGHT------------AIVYSIDSHASG---LIVSGSEDRF   54 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~-----------~i~~l~gH~------------~~V~~v~~~p~g---~l~s~s~D~t   54 (563)
                      +|++|++|+.||+|++|++ +++           +..++.+|.            +.|.+++|+|++   .+++++.|++
T Consensus        39 ~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~  118 (447)
T 3dw8_B           39 SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKT  118 (447)
T ss_dssp             SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSC
T ss_pred             CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCe
Confidence            5789999999999999999 555           588999998            889999999985   7999999999


Q ss_pred             EEEEc--CCce---------------------------------------eEEE-e-cCCcEEEEEEccCCc-EEEEeCC
Q 008510           55 AKIWK--DGVC---------------------------------------VQSI-E-HPGCVWDAKFLENGD-IVTACSD   90 (563)
Q Consensus        55 vriWd--~~~~---------------------------------------~~~l-~-h~~~V~~v~~~p~g~-i~sgs~D   90 (563)
                      |++|+  .+..                                       ...+ . |...|++++|+|+|+ +++| .|
T Consensus       119 i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d  197 (447)
T 3dw8_B          119 IKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DD  197 (447)
T ss_dssp             EEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CS
T ss_pred             EEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CC
Confidence            99999  3222                                       1133 2 888999999999999 7887 89


Q ss_pred             CcEEEEEcCCCc-eecee-----eecccccccc---------eeEEeeccCCceEEEeCCCCce----ee----------
Q 008510           91 GVTRIWTVHSDK-VADSL-----ELEAYASELS---------QYKLCRKKVGGLKLEDLPGLEA----LQ----------  141 (563)
Q Consensus        91 g~Irvwd~~~~~-~~~~~-----~~~~~~~~v~---------~~~~~~~~~~~i~~~d~~~~~~----l~----------  141 (563)
                      +.|++||+++.. .....     .+..+...+.         ...+++..++.|++||++....    +.          
T Consensus       198 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  277 (447)
T 3dw8_B          198 LRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSN  277 (447)
T ss_dssp             SEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----
T ss_pred             CeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccc
Confidence            999999998433 22211     1233333222         4566778899999999987653    11          


Q ss_pred             -------------ecccCCCeEEEEecCCCeEEEEEeccc-ceEEEeCcEeeCCCCCCCceeecCccc-----------C
Q 008510          142 -------------IPGTNAGQTKVVREGDNGVAYSWDMKE-QKWDKLGEVVDGPDDGMNRPILDGIQY-----------D  196 (563)
Q Consensus       142 -------------~~g~~dg~~~l~~~~~~~~~~~wd~~~-~~w~~~g~v~~~~~~~~~~~~~~g~~~-----------d  196 (563)
                                   ...+++|.+.+..+.  +.+.+||... +.               ....+.+|..           +
T Consensus       278 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~~v~iwd~~~~~~---------------~~~~~~~~~~~~~~l~~~~~~~  340 (447)
T 3dw8_B          278 RSFFSEIISSISDVKFSHSGRYMMTRDY--LSVKVWDLNMENR---------------PVETYQVHEYLRSKLCSLYEND  340 (447)
T ss_dssp             CCHHHHHTTCEEEEEECTTSSEEEEEES--SEEEEEETTCCSS---------------CSCCEESCGGGTTTHHHHHHTS
T ss_pred             cccccccCceEEEEEECCCCCEEEEeeC--CeEEEEeCCCCcc---------------ccceeecccccccccccccccc
Confidence                         124455555444433  5566777643 21               1122333321           1


Q ss_pred             c---EEEEEc-CCCCeeeeecCCCCCChhHHHH
Q 008510          197 Y---VFDVDI-GDGEPTRKLPYNRSDNPYDAAD  225 (563)
Q Consensus       197 ~---v~~vd~-~dg~~~~~~~~n~~~~~w~~a~  225 (563)
                      .   ++.+.+ ++|..++++..|+.+++|++..
T Consensus       341 ~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~  373 (447)
T 3dw8_B          341 CIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNT  373 (447)
T ss_dssp             GGGCCCCEEECTTSSEEEEECSTTEEEEEETTT
T ss_pred             ccccceEEEECCCCCEEEEeccCCEEEEEEcCC
Confidence            2   345888 8999999999999999999864

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.75  E-value=2.2e-17  Score=169.95  Aligned_cols=188  Identities=11%  Similarity=0.065  Sum_probs=136.1

Q ss_pred             CCCEEE--EEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe---cCCcE
Q 008510            2 PGVGII--SASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE---HPGCV   73 (563)
Q Consensus         2 ~g~~l~--s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~---h~~~V   73 (563)
                      ||++++  +++.|++||+||+ +++++.++. |...|++++|+|+| .+++++.|+.+++|. +++.+....   |...|
T Consensus       144 Dg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v  222 (365)
T 4h5i_A          144 EGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSL  222 (365)
T ss_dssp             TSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEE
T ss_pred             CCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCE
Confidence            567765  4557999999999 888888875 78889999999999 888888666555555 777655433   77799


Q ss_pred             EEEEEccCCc-EEEEeCCC----cEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceeeecccCCC
Q 008510           74 WDAKFLENGD-IVTACSDG----VTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAG  148 (563)
Q Consensus        74 ~~v~~~p~g~-i~sgs~Dg----~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg  148 (563)
                      ++++|+|+|. +++++.|+    .++.|+.......... ..                    ...-....+.....++||
T Consensus       223 ~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~-~~--------------------~~~~~~~~V~~~~~Spdg  281 (365)
T 4h5i_A          223 SKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLR-SK--------------------QVTNRFKGITSMDVDMKG  281 (365)
T ss_dssp             EEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEE-EE--------------------EEESSCSCEEEEEECTTS
T ss_pred             EEEEEcCCCCEEEEEecCCcceeEEeecccccceeccee-ee--------------------eecCCCCCeEeEEECCCC
Confidence            9999999999 88888887    6888998776522110 00                    001111123334467888


Q ss_pred             eEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHHHHH
Q 008510          149 QTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAADKW  227 (563)
Q Consensus       149 ~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~~f  227 (563)
                      .+.+..+.| +.+.+||..+++...              .+..||. +.|.++.| +||+.+++++.|+++++|++.+.|
T Consensus       282 ~~lasgs~D-~~V~iwd~~~~~~~~--------------~~~~gH~-~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~  345 (365)
T 4h5i_A          282 ELAVLASND-NSIALVKLKDLSMSK--------------IFKQAHS-FAITEVTISPDSTYVASVSAANTIHIIKLPLNY  345 (365)
T ss_dssp             CEEEEEETT-SCEEEEETTTTEEEE--------------EETTSSS-SCEEEEEECTTSCEEEEEETTSEEEEEECCTTT
T ss_pred             CceEEEcCC-CEEEEEECCCCcEEE--------------EecCccc-CCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCC
Confidence            887777766 556789987654221              1235665 78999999 999999999999999999985443

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.75  E-value=6.7e-17  Score=167.68  Aligned_cols=205  Identities=18%  Similarity=0.244  Sum_probs=156.0

Q ss_pred             CCCEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCc-----
Q 008510            2 PGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGC-----   72 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~-----   72 (563)
                      +|++|++|+.||+|++||.+++.+..+.+|...|.+++|+|++ .+++++.|++|++||  +++.++.+. +...     
T Consensus       119 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  198 (425)
T 1r5m_A          119 DGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSIN  198 (425)
T ss_dssp             TSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC--------
T ss_pred             CCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCcccee
Confidence            5789999999999999999999999999999999999999999 899999999999999  778888877 4444     


Q ss_pred             ----------EEEEEEccCCcEEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeC
Q 008510           73 ----------VWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDL  134 (563)
Q Consensus        73 ----------V~~v~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~  134 (563)
                                +.+++|+|++.+++++.||.|++||+++++...  .+..+...+.        ...+++..++.|++||+
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~  276 (425)
T 1r5m_A          199 AENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTG--KLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHG  276 (425)
T ss_dssp             -------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSE--EECCCSSCEEEEEEETTTTEEEEEETTSCEEEECS
T ss_pred             eccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceee--eeccCCCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence                      999999999889999999999999999876432  2223332222        35556777899999999


Q ss_pred             CCCceeeec-----------ccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc
Q 008510          135 PGLEALQIP-----------GTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI  203 (563)
Q Consensus       135 ~~~~~l~~~-----------g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~  203 (563)
                      ...+.+...           .+++| . ++....++.+++|+...+...               ..+.++. ..|.++.+
T Consensus       277 ~~~~~~~~~~~~~~~i~~~~~~~~~-~-l~~~~~d~~i~i~d~~~~~~~---------------~~~~~~~-~~i~~~~~  338 (425)
T 1r5m_A          277 GNGNSQNCFYGHSQSIVSASWVGDD-K-VISCSMDGSVRLWSLKQNTLL---------------ALSIVDG-VPIFAGRI  338 (425)
T ss_dssp             SSBSCSEEECCCSSCEEEEEEETTT-E-EEEEETTSEEEEEETTTTEEE---------------EEEECTT-CCEEEEEE
T ss_pred             CCCccceEecCCCccEEEEEECCCC-E-EEEEeCCCcEEEEECCCCcEe---------------EecccCC-ccEEEEEE
Confidence            866443322           33455 2 333333356677876554321               1233333 56899999


Q ss_pred             -CCCCeeeeecCCCCCChhHHHHH
Q 008510          204 -GDGEPTRKLPYNRSDNPYDAADK  226 (563)
Q Consensus       204 -~dg~~~~~~~~n~~~~~w~~a~~  226 (563)
                       ++|..++....|+.+.+|++...
T Consensus       339 s~~~~~l~~~~~dg~i~i~~~~~~  362 (425)
T 1r5m_A          339 SQDGQKYAVAFMDGQVNVYDLKKL  362 (425)
T ss_dssp             CTTSSEEEEEETTSCEEEEECHHH
T ss_pred             cCCCCEEEEEECCCeEEEEECCCC
Confidence             89999999999999999998754

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.74  E-value=2e-17  Score=166.60  Aligned_cols=174  Identities=17%  Similarity=0.220  Sum_probs=125.7

Q ss_pred             CCEEEEEECCCcEEEEcC-CC--ceeEEEecCCCcEEEEEEcCC--C-eEEEEeCCCcEEEEc-C-Cce---eEEEe-cC
Q 008510            3 GVGIISASHDCTIRLWAL-TG--QVLMEMVGHTAIVYSIDSHAS--G-LIVSGSEDRFAKIWK-D-GVC---VQSIE-HP   70 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g--~~i~~l~gH~~~V~~v~~~p~--g-~l~s~s~D~tvriWd-~-~~~---~~~l~-h~   70 (563)
                      |++|+|||.|++|++||+ ++  +++.++.+|...|.+++|+|+  | .+++|+.|++|++|+ . +..   ...+. |.
T Consensus        71 ~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~  150 (316)
T 3bg1_A           71 GNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHT  150 (316)
T ss_dssp             SSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSS
T ss_pred             CCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeecccc
Confidence            789999999999999999 55  467788999999999999997  6 899999999999999 3 322   22233 88


Q ss_pred             CcEEEEEEccC-----------------Cc-EEEEeCCCcEEEEEcCCCc-eeceeeecccccccc------------ee
Q 008510           71 GCVWDAKFLEN-----------------GD-IVTACSDGVTRIWTVHSDK-VADSLELEAYASELS------------QY  119 (563)
Q Consensus        71 ~~V~~v~~~p~-----------------g~-i~sgs~Dg~Irvwd~~~~~-~~~~~~~~~~~~~v~------------~~  119 (563)
                      ..|.+++|+|+                 +. +++|+.|++|++||++... ......+..|...+.            ..
T Consensus       151 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~  230 (316)
T 3bg1_A          151 IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTST  230 (316)
T ss_dssp             SCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCE
T ss_pred             CCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCce
Confidence            89999999997                 35 9999999999999997542 122233444443332            35


Q ss_pred             EEeeccCCceEEEeCCCC-------ce--------eeecccCCCeEEEEecCCCeEEEEEecc-cceEEEeCcE
Q 008510          120 KLCRKKVGGLKLEDLPGL-------EA--------LQIPGTNAGQTKVVREGDNGVAYSWDMK-EQKWDKLGEV  177 (563)
Q Consensus       120 ~~~~~~~~~i~~~d~~~~-------~~--------l~~~g~~dg~~~l~~~~~~~~~~~wd~~-~~~w~~~g~v  177 (563)
                      .+++..|+.|++|++...       ..        .....+++|.+.+..+.| +.+.+|+.. .+.|..+..+
T Consensus       231 las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D-~~v~lw~~~~~g~~~~~~~~  303 (316)
T 3bg1_A          231 IASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGD-NKVTLWKESVDGQWVCISDV  303 (316)
T ss_dssp             EEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESS-SCEEEEEECTTSCEEEEEEC
T ss_pred             EEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCC-CeEEEEEECCCCcEEEeeec
Confidence            667788999999998652       11        122255666665555554 445678754 4566655443

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.74  E-value=7.9e-17  Score=169.12  Aligned_cols=220  Identities=10%  Similarity=0.068  Sum_probs=150.8

Q ss_pred             CCCEEEEEECCCcEEEEcC-C---Cc---eeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-----CCceeEEEe
Q 008510            2 PGVGIISASHDCTIRLWAL-T---GQ---VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-----DGVCVQSIE   68 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~---g~---~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-----~~~~~~~l~   68 (563)
                      +|++|++||.||+|++||+ +   +.   +...+ +|...|.+++|+|++ .+++|+.|++|++||     .++++..+.
T Consensus        75 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~  153 (437)
T 3gre_A           75 ETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLN  153 (437)
T ss_dssp             SSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEE
T ss_pred             CCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccc
Confidence            5789999999999999998 4   43   23333 599999999999998 999999999999998     344433332


Q ss_pred             -------------cCCcEEEEE--EccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeec
Q 008510           69 -------------HPGCVWDAK--FLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRK  124 (563)
Q Consensus        69 -------------h~~~V~~v~--~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~  124 (563)
                                   +...+.++.  +++++. +++|+.||.|++||+++++.........+...+.        ...+++.
T Consensus       154 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~  233 (437)
T 3gre_A          154 CECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGT  233 (437)
T ss_dssp             EEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEE
T ss_pred             cceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEc
Confidence                         334666666  446777 9999999999999999987554333221333333        4456778


Q ss_pred             cCCceEEEeCCCCceeeec----------------ccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCC---
Q 008510          125 KVGGLKLEDLPGLEALQIP----------------GTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGM---  185 (563)
Q Consensus       125 ~~~~i~~~d~~~~~~l~~~----------------g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~---  185 (563)
                      .++.|++||++....+...                .+++|.+.+.. ..++.+.+||...+.....  +.++...-.   
T Consensus       234 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~  310 (437)
T 3gre_A          234 TRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGG-SSKTFLTIWNFVKGHCQYA--FINSDEQPSMEH  310 (437)
T ss_dssp             TTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEE-STTEEEEEEETTTTEEEEE--EESSSSCCCGGG
T ss_pred             CCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEE-cCCCcEEEEEcCCCcEEEE--EEcCCCCCccce
Confidence            8899999999876544321                22344444444 4447788999887754332  222111000   


Q ss_pred             --------CceeecC--cccCcEEEEEcCCCCeeeeecCCCCCChhHHHHH
Q 008510          186 --------NRPILDG--IQYDYVFDVDIGDGEPTRKLPYNRSDNPYDAADK  226 (563)
Q Consensus       186 --------~~~~~~g--~~~d~v~~vd~~dg~~~~~~~~n~~~~~w~~a~~  226 (563)
                              ....+.|  +. +.|.++.+.++..++++..|+.+++|++...
T Consensus       311 ~~~~~~~l~~~~~~~~~~~-~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~  360 (437)
T 3gre_A          311 FLPIEKGLEELNFCGIRSL-NALSTISVSNDKILLTDEATSSIVMFSLNEL  360 (437)
T ss_dssp             GSCBCSSGGGCCCCCCCSG-GGGCCEEEETTEEEEEEGGGTEEEEEETTCG
T ss_pred             ecccccccccceecccccC-CceEEEEECCceEEEecCCCCeEEEEECCCc
Confidence                    0111333  33 5677888877788999999999999998643

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.74  E-value=6e-17  Score=170.04  Aligned_cols=206  Identities=10%  Similarity=0.051  Sum_probs=140.8

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEec--CCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe--cCCcE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVG--HTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE--HPGCV   73 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~g--H~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~--h~~~V   73 (563)
                      ++.++++|+.|++|++||+ +++++.++.+  |.+.|.+++|+|++ .+++|+.|++|++||  .++++.++.  |...|
T Consensus       181 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v  260 (437)
T 3gre_A          181 EKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPI  260 (437)
T ss_dssp             SCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEE
T ss_pred             CCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCce
Confidence            3789999999999999999 8999999998  89999999999999 999999999999999  788888875  66699


Q ss_pred             EEEEEcc----CCc-EEEEeCCCcEEEEEcCCCceeceeeec----------------------c--ccccc-------c
Q 008510           74 WDAKFLE----NGD-IVTACSDGVTRIWTVHSDKVADSLELE----------------------A--YASEL-------S  117 (563)
Q Consensus        74 ~~v~~~p----~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~----------------------~--~~~~v-------~  117 (563)
                      .+++|+|    ++. +++|+.||.|++||+++++......-.                      .  +...+       .
T Consensus       261 ~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~  340 (437)
T 3gre_A          261 THVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSND  340 (437)
T ss_dssp             EEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETT
T ss_pred             EEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCc
Confidence            9997765    566 899999999999999988744322210                      0  11111       1


Q ss_pred             eeEEeeccCCceEEEeCCCCceeeec-ccCCCeEEE---EecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCc
Q 008510          118 QYKLCRKKVGGLKLEDLPGLEALQIP-GTNAGQTKV---VREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGI  193 (563)
Q Consensus       118 ~~~~~~~~~~~i~~~d~~~~~~l~~~-g~~dg~~~l---~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~  193 (563)
                      ...+++..++.|++||+...+.+... ++......+   ....+....+..      |+..        .........+|
T Consensus       341 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~--------~~~~~~~~~~h  406 (437)
T 3gre_A          341 KILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRK------MKRT--------STHSVDDSLYH  406 (437)
T ss_dssp             EEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEE------CC---------------------
T ss_pred             eEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEe------cccc--------cccccCccccc
Confidence            45667788899999999877655443 332211111   111111110000      0000        00011223344


Q ss_pred             ccCcEEEEEc-CC--CCeeeeecCCCCCChhH
Q 008510          194 QYDYVFDVDI-GD--GEPTRKLPYNRSDNPYD  222 (563)
Q Consensus       194 ~~d~v~~vd~-~d--g~~~~~~~~n~~~~~w~  222 (563)
                      . +.|.++.+ ++  +..++++..|+.+++|+
T Consensus       407 ~-~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          407 H-DIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             C-CCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             c-cceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            4 78999999 55  77899999999999984

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.74  E-value=7.1e-17  Score=171.52  Aligned_cols=149  Identities=15%  Similarity=0.099  Sum_probs=112.0

Q ss_pred             CCCEEEEEECCCcEEEEcCCCceeEEEecCCC-----cEEEEEEcCCC-eEEEEeCCCcEEEEc--CCc-------eeEE
Q 008510            2 PGVGIISASHDCTIRLWALTGQVLMEMVGHTA-----IVYSIDSHASG-LIVSGSEDRFAKIWK--DGV-------CVQS   66 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~-----~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~-------~~~~   66 (563)
                      +|.++|++++||+|++|+..+ ++..+. |..     .|.+++|+|+| .+++|++||+|+|||  ++.       .+++
T Consensus        96 dG~~LAs~s~dg~V~iwd~~~-~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~t  173 (588)
T 2j04_A           96 IDDWMAVLSNNGNVSVFKDNK-MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESS  173 (588)
T ss_dssp             SSSCEEEEETTSCEEEEETTE-EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEE
T ss_pred             CCCEEEEEeCCCcEEEEeCCc-eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeee
Confidence            688999999999999999755 777777 776     49999999999 999999999999999  443       3577


Q ss_pred             Ee-----cCCcEEEEEEccCCcEEEEeCCCcEEEEEcCCCceec-eeee-cccccccce------eEEeeccCCceEEEe
Q 008510           67 IE-----HPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVAD-SLEL-EAYASELSQ------YKLCRKKVGGLKLED  133 (563)
Q Consensus        67 l~-----h~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~-~~~~-~~~~~~v~~------~~~~~~~~~~i~~~d  133 (563)
                      +.     |...|.+++|+|+| +++++.|++|++||+.++.... ...+ ..+...|..      ..+++ .++.|++||
T Consensus       174 i~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa-~~~tIkLWd  251 (588)
T 2j04_A          174 IRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLT-CPGYVHKID  251 (588)
T ss_dssp             EECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEE-CSSEEEEEE
T ss_pred             eecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEECCEEEEE-eCCeEEEEE
Confidence            63     66799999999999 9999999999999998876321 1123 234334433      23333 468999999


Q ss_pred             CCCCceeeec-ccCCCeEEEEe
Q 008510          134 LPGLEALQIP-GTNAGQTKVVR  154 (563)
Q Consensus       134 ~~~~~~l~~~-g~~dg~~~l~~  154 (563)
                      +.+....... ||.+....+..
T Consensus       252 ~~~~~~~~~~~gh~~~V~~va~  273 (588)
T 2j04_A          252 LKNYSISSLKTGSLENFHIIPL  273 (588)
T ss_dssp             TTTTEEEEEECSCCSCCCEEEE
T ss_pred             CCCCeEEEEEcCCCceEEEEEe
Confidence            9987763333 55444443333

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.73  E-value=1.8e-16  Score=157.57  Aligned_cols=199  Identities=15%  Similarity=0.230  Sum_probs=145.4

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-----CCceeEEEe-cCCcE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-----DGVCVQSIE-HPGCV   73 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-----~~~~~~~l~-h~~~V   73 (563)
                      +|++|++|+.||+|++||+ ++++...+.+|...|.+++|+|++ .+++++.|+.+++|+     ..+.+..+. |...|
T Consensus        28 ~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i  107 (313)
T 3odt_A           28 DDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNV  107 (313)
T ss_dssp             ETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCE
T ss_pred             CCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCE
Confidence            4789999999999999999 788889999999999999999999 999999999999999     235566676 88899


Q ss_pred             EEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccc---------cceeEEeeccCCceEEEeCCCCce----
Q 008510           74 WDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASE---------LSQYKLCRKKVGGLKLEDLPGLEA----  139 (563)
Q Consensus        74 ~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~i~~~d~~~~~~----  139 (563)
                      .+++|  +++ +++|+.||.|++||  .++..  ..+..+...         -....+++..++.+++||......    
T Consensus       108 ~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  181 (313)
T 3odt_A          108 CSLSF--QDGVVISGSWDKTAKVWK--EGSLV--YNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSG  181 (313)
T ss_dssp             EEEEE--ETTEEEEEETTSEEEEEE--TTEEE--EEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEEEEEECS
T ss_pred             EEEEe--cCCEEEEEeCCCCEEEEc--CCcEE--EecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCceEEEEec
Confidence            99999  445 99999999999999  33322  122222222         234556777889999999542211    


Q ss_pred             ------eeecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeee
Q 008510          140 ------LQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKL  212 (563)
Q Consensus       140 ------l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~  212 (563)
                            .....++++.  ++....++.+++||...+..               ...+.++. +.|.++.+ ++| .++..
T Consensus       182 ~~~~~i~~~~~~~~~~--~~~~~~dg~i~i~d~~~~~~---------------~~~~~~~~-~~i~~~~~~~~~-~l~~~  242 (313)
T 3odt_A          182 IHNDVVRHLAVVDDGH--FISCSNDGLIKLVDMHTGDV---------------LRTYEGHE-SFVYCIKLLPNG-DIVSC  242 (313)
T ss_dssp             SCSSCEEEEEEEETTE--EEEEETTSEEEEEETTTCCE---------------EEEEECCS-SCEEEEEECTTS-CEEEE
T ss_pred             cCcccEEEEEEcCCCe--EEEccCCCeEEEEECCchhh---------------hhhhhcCC-ceEEEEEEecCC-CEEEE
Confidence                  1112344555  33333345677788755421               12344554 67999999 787 59999


Q ss_pred             cCCCCCChhHHHH
Q 008510          213 PYNRSDNPYDAAD  225 (563)
Q Consensus       213 ~~n~~~~~w~~a~  225 (563)
                      ..|+.+.+|++..
T Consensus       243 ~~dg~v~iwd~~~  255 (313)
T 3odt_A          243 GEDRTVRIWSKEN  255 (313)
T ss_dssp             ETTSEEEEECTTT
T ss_pred             ecCCEEEEEECCC
Confidence            9999999999753

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.73  E-value=8e-17  Score=169.38  Aligned_cols=225  Identities=14%  Similarity=0.142  Sum_probs=152.2

Q ss_pred             CCEEEEEECCCcEEEEcC-C----------CceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc-CC-c----e
Q 008510            3 GVGIISASHDCTIRLWAL-T----------GQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK-DG-V----C   63 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~----------g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd-~~-~----~   63 (563)
                      +.+|++|+.||+|++|++ .          ++++.++.+|...|++++|+|++  .+++|+.||+|++|+ .. .    .
T Consensus       141 ~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  220 (430)
T 2xyi_A          141 ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRV  220 (430)
T ss_dssp             EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGE
T ss_pred             CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCce
Confidence            468999999999999999 4          57888999999999999999986  799999999999999 32 1    1


Q ss_pred             ---eEEEe-cCCcEEEEEEcc-CCc-EEEEeCCCcEEEEEcCCCce-eceeeecccccccc---------eeEEeeccCC
Q 008510           64 ---VQSIE-HPGCVWDAKFLE-NGD-IVTACSDGVTRIWTVHSDKV-ADSLELEAYASELS---------QYKLCRKKVG  127 (563)
Q Consensus        64 ---~~~l~-h~~~V~~v~~~p-~g~-i~sgs~Dg~Irvwd~~~~~~-~~~~~~~~~~~~v~---------~~~~~~~~~~  127 (563)
                         ...+. |...|++++|+| ++. +++++.||.|++||++++.. .....+..+...+.         ...+++..++
T Consensus       221 ~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg  300 (430)
T 2xyi_A          221 IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADK  300 (430)
T ss_dssp             EECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTS
T ss_pred             eccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCC
Confidence               34454 888999999999 455 88999999999999997631 11122233333222         2456778889


Q ss_pred             ceEEEeCCCCc-eee-ecccCCCeEEEEecCC----------CeEEEEEecccceEEEeCcEeeCCCCCCCceeecCccc
Q 008510          128 GLKLEDLPGLE-ALQ-IPGTNAGQTKVVREGD----------NGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQY  195 (563)
Q Consensus       128 ~i~~~d~~~~~-~l~-~~g~~dg~~~l~~~~~----------~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~  195 (563)
                      .|++||++... .+. ..++......+..+++          ++.+.+|+.....-..... ....+.......+.||. 
T Consensus       301 ~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~h~-  378 (430)
T 2xyi_A          301 TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE-DAEDGPPELLFIHGGHT-  378 (430)
T ss_dssp             EEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHH-HHHHCCTTEEEECCCCS-
T ss_pred             eEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcc-ccccCCcceEEEcCCCC-
Confidence            99999998632 222 2234333333333332          2344556654310000000 00000001223345555 


Q ss_pred             CcEEEEEc-CCCC-eeeeecCCCCCChhHHHHHHHH
Q 008510          196 DYVFDVDI-GDGE-PTRKLPYNRSDNPYDAADKWLL  229 (563)
Q Consensus       196 d~v~~vd~-~dg~-~~~~~~~n~~~~~w~~a~~f~~  229 (563)
                      +.|.++.+ +++. .+++.+.|+.+++|++.+..+.
T Consensus       379 ~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~~~  414 (430)
T 2xyi_A          379 AKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYN  414 (430)
T ss_dssp             SCEEEEEECSSSTTEEEEEETTSEEEEEEECHHHHC
T ss_pred             CCceEEEECCCCCCEEEEEECCCCEEEeEccccccc
Confidence            77999999 8887 7899999999999999887654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.73  E-value=1.3e-16  Score=161.86  Aligned_cols=208  Identities=14%  Similarity=0.136  Sum_probs=144.9

Q ss_pred             CC-EEEEEEC---CCcEEEEcC-CCceeEE-EecCCCcEEEEEEcCC---C-eEEEEeCCCcEEEEc--CCc-eeEEEe-
Q 008510            3 GV-GIISASH---DCTIRLWAL-TGQVLME-MVGHTAIVYSIDSHAS---G-LIVSGSEDRFAKIWK--DGV-CVQSIE-   68 (563)
Q Consensus         3 g~-~l~s~s~---DgtIrlWd~-~g~~i~~-l~gH~~~V~~v~~~p~---g-~l~s~s~D~tvriWd--~~~-~~~~l~-   68 (563)
                      |. ++++|+.   ||+|++||+ ++++... ..+|...|.+++|+|+   | .+++|+.|++|++||  +++ ++..+. 
T Consensus        30 ~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  109 (357)
T 3i2n_A           30 SAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKG  109 (357)
T ss_dssp             SSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECC
T ss_pred             CceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEe
Confidence            54 4556665   999999999 6665544 3489999999999998   6 899999999999999  555 778887 


Q ss_pred             cCCcEEEEEE------ccCCc-EEEEeCCCcEEEEEcCCCc-eeceeeeccccc----------------ccceeEEeec
Q 008510           69 HPGCVWDAKF------LENGD-IVTACSDGVTRIWTVHSDK-VADSLELEAYAS----------------ELSQYKLCRK  124 (563)
Q Consensus        69 h~~~V~~v~~------~p~g~-i~sgs~Dg~Irvwd~~~~~-~~~~~~~~~~~~----------------~v~~~~~~~~  124 (563)
                      |...|.+++|      +|+++ +++|+.||.|++||+++++ ...  .+..+..                .-....+++.
T Consensus       110 ~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~  187 (357)
T 3i2n_A          110 HKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVA--NMEPVQGENKRDCWTVAFGNAYNQEERVVCAGY  187 (357)
T ss_dssp             CSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSE--EECCCTTSCCCCEEEEEEECCCC-CCCEEEEEE
T ss_pred             cccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcce--eccccCCCCCCceEEEEEEeccCCCCCEEEEEc
Confidence            8899999965      57887 9999999999999999875 222  1111111                1234556677


Q ss_pred             cCCceEEEeCCCCceeeecc----------cC---CCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeec
Q 008510          125 KVGGLKLEDLPGLEALQIPG----------TN---AGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILD  191 (563)
Q Consensus       125 ~~~~i~~~d~~~~~~l~~~g----------~~---dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~  191 (563)
                      .++.|++||++..+......          ++   ++...+..+.+ +.+++||...+.  ....+.        ...+.
T Consensus       188 ~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~--~~~~~~--------~~~~~  256 (357)
T 3i2n_A          188 DNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLE-GKFHVFDMRTQH--PTKGFA--------SVSEK  256 (357)
T ss_dssp             TTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEEST-TEEEEEEEEEEE--TTTEEE--------EEEEE
T ss_pred             cCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCC-CeEEEEeCcCCC--ccccee--------eeccC
Confidence            88999999998776543333          33   44444444433 445667654331  110000        01123


Q ss_pred             CcccCcEEEEEc-CCCC-eeeeecCCCCCChhHHH
Q 008510          192 GIQYDYVFDVDI-GDGE-PTRKLPYNRSDNPYDAA  224 (563)
Q Consensus       192 g~~~d~v~~vd~-~dg~-~~~~~~~n~~~~~w~~a  224 (563)
                      ++. +.|.++.+ ++|. .++....|+.+++|++.
T Consensus       257 ~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~  290 (357)
T 3i2n_A          257 AHK-STVWQVRHLPQNRELFLTAGGAGGLHLWKYE  290 (357)
T ss_dssp             CCS-SCEEEEEEETTEEEEEEEEETTSEEEEEEEE
T ss_pred             CCc-CCEEEEEECCCCCcEEEEEeCCCcEEEeecC
Confidence            554 67999999 8888 79999999999999974

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.73  E-value=4.2e-17  Score=169.37  Aligned_cols=207  Identities=13%  Similarity=0.187  Sum_probs=148.9

Q ss_pred             CCCEEEEEECCCcEEEEcC-C----CceeEEEecCCCcEEEEEEcCC-C-eEEEEeCCCcEEEEc--CCc------eeEE
Q 008510            2 PGVGIISASHDCTIRLWAL-T----GQVLMEMVGHTAIVYSIDSHAS-G-LIVSGSEDRFAKIWK--DGV------CVQS   66 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~----g~~i~~l~gH~~~V~~v~~~p~-g-~l~s~s~D~tvriWd--~~~------~~~~   66 (563)
                      +|++|++|+.||+|++|++ .    .+++..+.+|...|.+++|+|+ + .+++++.|++|++||  +++      ....
T Consensus        78 ~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~  157 (416)
T 2pm9_A           78 NNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLT  157 (416)
T ss_dssp             SSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBC
T ss_pred             CCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccc
Confidence            5788999999999999999 4    2588999999999999999998 6 899999999999999  443      2222


Q ss_pred             E---e-cCCcEEEEEEccC-Cc-EEEEeCCCcEEEEEcCCCceeceeeecc----cccccc---------eeEEeeccCC
Q 008510           67 I---E-HPGCVWDAKFLEN-GD-IVTACSDGVTRIWTVHSDKVADSLELEA----YASELS---------QYKLCRKKVG  127 (563)
Q Consensus        67 l---~-h~~~V~~v~~~p~-g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~----~~~~v~---------~~~~~~~~~~  127 (563)
                      +   . |...|++++|+|+ +. +++|+.||.|++||+++++.........    +...+.         ...+++..++
T Consensus       158 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  237 (416)
T 2pm9_A          158 PGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSD  237 (416)
T ss_dssp             CCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCS
T ss_pred             cccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCC
Confidence            2   2 8889999999998 55 8999999999999999987543332210    011111         3455666677


Q ss_pred             ---ceEEEeCCCCc-eee-ec-ccC-----------CCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceee
Q 008510          128 ---GLKLEDLPGLE-ALQ-IP-GTN-----------AGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPIL  190 (563)
Q Consensus       128 ---~i~~~d~~~~~-~l~-~~-g~~-----------dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~  190 (563)
                         .|++||++... .+. .. ++.           ++.+.+..+.+ +.+++||...+..               ...+
T Consensus       238 ~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d-g~v~~wd~~~~~~---------------~~~~  301 (416)
T 2pm9_A          238 NDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRD-NTVLLWNPESAEQ---------------LSQF  301 (416)
T ss_dssp             SSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESS-SEEEEECSSSCCE---------------EEEE
T ss_pred             CCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCC-CCEEEeeCCCCcc---------------ceee
Confidence               99999998642 221 12 333           34443333333 4456677554321               2234


Q ss_pred             cCcccCcEEEEEc-CCC-CeeeeecCCCCCChhHHHH
Q 008510          191 DGIQYDYVFDVDI-GDG-EPTRKLPYNRSDNPYDAAD  225 (563)
Q Consensus       191 ~g~~~d~v~~vd~-~dg-~~~~~~~~n~~~~~w~~a~  225 (563)
                      .+|. +.|.++.+ ++| ..+++...|+.+++|++..
T Consensus       302 ~~~~-~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~  337 (416)
T 2pm9_A          302 PARG-NWCFKTKFAPEAPDLFACASFDNKIEVQTLQN  337 (416)
T ss_dssp             ECSS-SCCCCEEECTTCTTEEEECCSSSEEEEEESCC
T ss_pred             cCCC-CceEEEEECCCCCCEEEEEecCCcEEEEEccC
Confidence            4554 67889999 888 7899999999999999853

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.73  E-value=2.9e-16  Score=163.30  Aligned_cols=202  Identities=10%  Similarity=0.073  Sum_probs=149.9

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeEEEec-CCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLMEMVG-HTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA   76 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~g-H~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v   76 (563)
                      +..+++++.|++|++|++ ++++...+.. |...|.+++|+|++ .+++|+.||.|++||  +++.++.+. |...|.++
T Consensus       103 ~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  182 (401)
T 4aez_A          103 NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCL  182 (401)
T ss_dssp             TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred             CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEE
Confidence            456888999999999999 7888877776 89999999999999 999999999999999  788888887 88999999


Q ss_pred             EEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEeeccCCceEEEeCCCCceeeec----
Q 008510           77 KFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLCRKKVGGLKLEDLPGLEALQIP----  143 (563)
Q Consensus        77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~~l~~~----  143 (563)
                      +|+  ++ +++|+.||.|++||++.... ....+..+...+.        ...+++..++.|++||+.....+...    
T Consensus       183 ~~~--~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~  259 (401)
T 4aez_A          183 SWN--RHVLSSGSRSGAIHHHDVRIANH-QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHN  259 (401)
T ss_dssp             EEE--TTEEEEEETTSEEEEEETTSSSC-EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCS
T ss_pred             EEC--CCEEEEEcCCCCEEEEecccCcc-eeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCc
Confidence            994  45 99999999999999985431 1223333333332        45567778899999999876544322    


Q ss_pred             -------ccCCCeEEEEecC--CCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeee--
Q 008510          144 -------GTNAGQTKVVREG--DNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRK--  211 (563)
Q Consensus       144 -------g~~dg~~~l~~~~--~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~--  211 (563)
                             .++++...++..+  .++.+++||..++....               .+..  ...|.++.+ ++|..++.  
T Consensus       260 ~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~---------------~~~~--~~~v~~~~~s~~~~~l~~~~  322 (401)
T 4aez_A          260 AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVN---------------TVDA--GSQVTSLIWSPHSKEIMSTH  322 (401)
T ss_dssp             SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEE---------------EEEC--SSCEEEEEECSSSSEEEEEE
T ss_pred             ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEE---------------EEeC--CCcEEEEEECCCCCeEEEEe
Confidence                   3444444444433  35667788876553221               1111  145889999 88988888  


Q ss_pred             ecCCCCCChhHHH
Q 008510          212 LPYNRSDNPYDAA  224 (563)
Q Consensus       212 ~~~n~~~~~w~~a  224 (563)
                      +..|+.+.+|+..
T Consensus       323 g~~dg~i~v~~~~  335 (401)
T 4aez_A          323 GFPDNNLSIWSYS  335 (401)
T ss_dssp             CTTTCEEEEEEEE
T ss_pred             ecCCCcEEEEecC
Confidence            4478899999874

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.72  E-value=2e-16  Score=162.99  Aligned_cols=183  Identities=10%  Similarity=0.052  Sum_probs=133.4

Q ss_pred             CEEEEEECCCcEEEEcC-CCceeEEEe--cCCCcEEEEEEcC-CC-eEEEEeCCCcEEEEc-CCceeEEEe-c---CCcE
Q 008510            4 VGIISASHDCTIRLWAL-TGQVLMEMV--GHTAIVYSIDSHA-SG-LIVSGSEDRFAKIWK-DGVCVQSIE-H---PGCV   73 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~-~g~~i~~l~--gH~~~V~~v~~~p-~g-~l~s~s~D~tvriWd-~~~~~~~l~-h---~~~V   73 (563)
                      ++|++|+.||+|++||+ +++....+.  +|...|.+++|+| ++ .+++++.|++|++|| .+..+..+. +   ...|
T Consensus        87 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v  166 (383)
T 3ei3_B           87 TTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWY  166 (383)
T ss_dssp             TEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCE
T ss_pred             CEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCe
Confidence            79999999999999999 677766665  7999999999999 56 899999999999999 777777776 3   3689


Q ss_pred             EEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceeeecccCCCeEEE
Q 008510           74 WDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKV  152 (563)
Q Consensus        74 ~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg~~~l  152 (563)
                      ++++|+|+++ +++|+.|+.|++||++... .  ..+..+.                       ..+.....++++...+
T Consensus       167 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~--~~~~~h~-----------------------~~v~~~~~~~~~~~~l  220 (383)
T 3ei3_B          167 CCVDVSVSRQMLATGDSTGRLLLLGLDGHE-I--FKEKLHK-----------------------AKVTHAEFNPRCDWLM  220 (383)
T ss_dssp             EEEEEETTTTEEEEEETTSEEEEEETTSCE-E--EEEECSS-----------------------SCEEEEEECSSCTTEE
T ss_pred             EEEEECCCCCEEEEECCCCCEEEEECCCCE-E--EEeccCC-----------------------CcEEEEEECCCCCCEE
Confidence            9999999999 9999999999999995322 1  1122221                       2223333556666333


Q ss_pred             EecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-C-CCCeeeeecCCCCCChhHHHH
Q 008510          153 VREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-G-DGEPTRKLPYNRSDNPYDAAD  225 (563)
Q Consensus       153 ~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~-dg~~~~~~~~n~~~~~w~~a~  225 (563)
                      +....++.+.+||.....-  .+...         ..+ ++. +.|.++.+ + +|..++....|+.+.+|++..
T Consensus       221 ~s~~~d~~i~iwd~~~~~~--~~~~~---------~~~-~~~-~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~  282 (383)
T 3ei3_B          221 ATSSVDATVKLWDLRNIKD--KNSYI---------AEM-PHE-KPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYD  282 (383)
T ss_dssp             EEEETTSEEEEEEGGGCCS--TTCEE---------EEE-ECS-SCEEEEEECTTTSCEEEEEESSSEEEEEETTB
T ss_pred             EEEeCCCEEEEEeCCCCCc--ccceE---------EEe-cCC-CceEEEEEcCCCCCEEEEEcCCCcEEEEECCC
Confidence            3333346677888765210  00111         112 333 67999999 7 999999999999999999753

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.72  E-value=2.8e-16  Score=158.61  Aligned_cols=197  Identities=9%  Similarity=0.066  Sum_probs=146.4

Q ss_pred             CCC-EEEEEECCCcEEEEcC-CCceeEEEec--CCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--C---------CceeE
Q 008510            2 PGV-GIISASHDCTIRLWAL-TGQVLMEMVG--HTAIVYSIDSHASG-LIVSGSEDRFAKIWK--D---------GVCVQ   65 (563)
Q Consensus         2 ~g~-~l~s~s~DgtIrlWd~-~g~~i~~l~g--H~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~---------~~~~~   65 (563)
                      +|+ +|++|+.||+|++||+ .......+.+  |...|.+++|+| + .+++++.|++|++||  +         ++++.
T Consensus        67 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~  145 (342)
T 1yfq_A           67 NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN  145 (342)
T ss_dssp             SSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS
T ss_pred             CCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeee
Confidence            467 8999999999999999 8777788999  999999999999 7 999999999999999  5         66777


Q ss_pred             EEecCCcEEEEEEccCCcEEEEeCCCcEEEEEcCC-Cceeceeeecccc-------cc--cceeEEeeccCCceEEEeCC
Q 008510           66 SIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHS-DKVADSLELEAYA-------SE--LSQYKLCRKKVGGLKLEDLP  135 (563)
Q Consensus        66 ~l~h~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~-~~~~~~~~~~~~~-------~~--v~~~~~~~~~~~~i~~~d~~  135 (563)
                      ++.|+..|++++|+|++ +++++.|+.|++||+++ +..........+.       -.  -....+++..++.+++|++.
T Consensus       146 ~~~~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~  224 (342)
T 1yfq_A          146 NTKVKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFD  224 (342)
T ss_dssp             SSSSCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECC
T ss_pred             EEeeCCceEEEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEc
Confidence            77788999999999988 99999999999999998 5422111111111       11  23456677788999999987


Q ss_pred             CC------ce--------------------eeecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCcee
Q 008510          136 GL------EA--------------------LQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPI  189 (563)
Q Consensus       136 ~~------~~--------------------l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~  189 (563)
                      ..      ..                    .....+++|.+.+..+.+ +.+++||..++...               ..
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~i~vwd~~~~~~~---------------~~  288 (342)
T 1yfq_A          225 DQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD-GIISCWNLQTRKKI---------------KN  288 (342)
T ss_dssp             TTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETT-SCEEEEETTTTEEE---------------EE
T ss_pred             CCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCC-ceEEEEcCccHhHh---------------hh
Confidence            65      11                    112244555555544444 45667887655322               12


Q ss_pred             ecCcccCcEEEEEcCCCCeeeeecCCCC
Q 008510          190 LDGIQYDYVFDVDIGDGEPTRKLPYNRS  217 (563)
Q Consensus       190 ~~g~~~d~v~~vd~~dg~~~~~~~~n~~  217 (563)
                      +.+++.+.|.++. ++|..++..+.|+.
T Consensus       289 ~~~~h~~~v~~~~-~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          289 FAKFNEDSVVKIA-CSDNILCLATSDDT  315 (342)
T ss_dssp             CCCCSSSEEEEEE-ECSSEEEEEEECTH
T ss_pred             hhcccCCCceEec-CCCCeEEEEecCCc
Confidence            4455236788888 99999999999884

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.72  E-value=5.9e-16  Score=157.41  Aligned_cols=166  Identities=11%  Similarity=0.091  Sum_probs=122.3

Q ss_pred             EEEEECCCcEEEEcCC----------CceeEEEe-cCCCcEEEEEEcC--CC-eEEEEeCCCcEEEEc--CCceeEEEe-
Q 008510            6 IISASHDCTIRLWALT----------GQVLMEMV-GHTAIVYSIDSHA--SG-LIVSGSEDRFAKIWK--DGVCVQSIE-   68 (563)
Q Consensus         6 l~s~s~DgtIrlWd~~----------g~~i~~l~-gH~~~V~~v~~~p--~g-~l~s~s~D~tvriWd--~~~~~~~l~-   68 (563)
                      +++||.|++|++|+..          ++.+..+. +|.+.|.+++|+|  ++ .+++|+.|++|++||  ++++++... 
T Consensus        88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~  167 (343)
T 3lrv_A           88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA  167 (343)
T ss_dssp             EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC
T ss_pred             eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec
Confidence            8999999999999663          33344544 7889999999999  88 999999999999999  777776664 


Q ss_pred             -cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecc-ccccccee--------EEeeccCCceEEEeCCCC
Q 008510           69 -HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEA-YASELSQY--------KLCRKKVGGLKLEDLPGL  137 (563)
Q Consensus        69 -h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~-~~~~v~~~--------~~~~~~~~~i~~~d~~~~  137 (563)
                       |...|.+++|+|+|. +++|+.||.|++||+++++... ..+.. |...+...        .+++. ++.|++||++..
T Consensus       168 ~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~-~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~  245 (343)
T 3lrv_A          168 KSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQAS-SRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKD  245 (343)
T ss_dssp             CSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCC-EECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSS
T ss_pred             CCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCc-cEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCC
Confidence             555899999999999 8999999999999999987431 12233 44444332        23344 569999999876


Q ss_pred             ceee----------------ecccCCCeEEEEecCCCeEEEEEec--ccceEEE
Q 008510          138 EALQ----------------IPGTNAGQTKVVREGDNGVAYSWDM--KEQKWDK  173 (563)
Q Consensus       138 ~~l~----------------~~g~~dg~~~l~~~~~~~~~~~wd~--~~~~w~~  173 (563)
                      ..+.                ...+++|.+.+..+.++..+.+|+.  ....|..
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~  299 (343)
T 3lrv_A          246 VGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK  299 (343)
T ss_dssp             TTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE
T ss_pred             CcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe
Confidence            4421                3356788888876663355666765  4556775

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.72  E-value=5e-17  Score=168.83  Aligned_cols=206  Identities=14%  Similarity=0.195  Sum_probs=146.7

Q ss_pred             CC-EEEEE----------ECCCcEEEEcC-CCc---eeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CC----
Q 008510            3 GV-GIISA----------SHDCTIRLWAL-TGQ---VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DG----   61 (563)
Q Consensus         3 g~-~l~s~----------s~DgtIrlWd~-~g~---~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~----   61 (563)
                      |+ ++++|          +.|++|++|++ +++   ++..+ +|...|.+++|+|++ .+++|+.|++|++|+ ..    
T Consensus        24 g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~  102 (416)
T 2pm9_A           24 KIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNA  102 (416)
T ss_dssp             SSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSC
T ss_pred             CCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEEEeeccccccc
Confidence            44 88888          89999999999 554   44444 689999999999999 999999999999999 32    


Q ss_pred             -ceeEEEe-cCCcEEEEEEccC-Cc-EEEEeCCCcEEEEEcCCCc------eec-eeeeccccccc---------ceeEE
Q 008510           62 -VCVQSIE-HPGCVWDAKFLEN-GD-IVTACSDGVTRIWTVHSDK------VAD-SLELEAYASEL---------SQYKL  121 (563)
Q Consensus        62 -~~~~~l~-h~~~V~~v~~~p~-g~-i~sgs~Dg~Irvwd~~~~~------~~~-~~~~~~~~~~v---------~~~~~  121 (563)
                       +++..+. |...|++++|+|+ +. +++|+.||.|++||+++++      ... ......+...+         ....+
T Consensus       103 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  182 (416)
T 2pm9_A          103 INSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFA  182 (416)
T ss_dssp             CCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEE
T ss_pred             ccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEE
Confidence             4677777 8899999999998 66 9999999999999998875      111 11112233222         24556


Q ss_pred             eeccCCceEEEeCCCCceeeec-cc------CCCeEEEEecCCC----------e---EEEEEecccceEEEeCcEeeCC
Q 008510          122 CRKKVGGLKLEDLPGLEALQIP-GT------NAGQTKVVREGDN----------G---VAYSWDMKEQKWDKLGEVVDGP  181 (563)
Q Consensus       122 ~~~~~~~i~~~d~~~~~~l~~~-g~------~dg~~~l~~~~~~----------~---~~~~wd~~~~~w~~~g~v~~~~  181 (563)
                      ++..++.|++||+...+.+... .+      ......+..++++          +   .+++||...+            
T Consensus       183 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~------------  250 (416)
T 2pm9_A          183 SAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA------------  250 (416)
T ss_dssp             EESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTST------------
T ss_pred             EEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCC------------
Confidence            6778899999999876554433 21      2333333333332          1   3334443221            


Q ss_pred             CCCCCceeec-CcccCcEEEEEc-C-CCCeeeeecCCCCCChhHHH
Q 008510          182 DDGMNRPILD-GIQYDYVFDVDI-G-DGEPTRKLPYNRSDNPYDAA  224 (563)
Q Consensus       182 ~~~~~~~~~~-g~~~d~v~~vd~-~-dg~~~~~~~~n~~~~~w~~a  224 (563)
                        ......+. +|. ..|.++.+ + ++..++....|+.+++|++.
T Consensus       251 --~~~~~~~~~~~~-~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~  293 (416)
T 2pm9_A          251 --NTPLQTLNQGHQ-KGILSLDWCHQDEHLLLSSGRDNTVLLWNPE  293 (416)
T ss_dssp             --TSCSBCCCSCCS-SCEEEEEECSSCSSCEEEEESSSEEEEECSS
T ss_pred             --CCCcEEeecCcc-CceeEEEeCCCCCCeEEEEeCCCCEEEeeCC
Confidence              01223455 565 67999999 6 89999999999999999974

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.72  E-value=3.5e-16  Score=164.87  Aligned_cols=201  Identities=23%  Similarity=0.360  Sum_probs=149.7

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAK   77 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~   77 (563)
                      +|+++++|+.||+|++||+ +++++.++.+|.+.|.+++|+++ .+++|+.|++|++||  +++++.++. |...|.+++
T Consensus       128 ~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~  206 (445)
T 2ovr_B          128 CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN-IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMH  206 (445)
T ss_dssp             ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             cCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCC-EEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEE
Confidence            5789999999999999999 89999999999999999999843 899999999999999  788888888 888999999


Q ss_pred             EccCCcEEEEeCCCcEEEEEcCCCceeceeeeccccccc------ceeEEeeccCCceEEEeCCCCceeeec-ccCC---
Q 008510           78 FLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASEL------SQYKLCRKKVGGLKLEDLPGLEALQIP-GTNA---  147 (563)
Q Consensus        78 ~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v------~~~~~~~~~~~~i~~~d~~~~~~l~~~-g~~d---  147 (563)
                      +++ ..+++|+.||.|++||+++++...  .+..+...+      ....+++..++.|++||+...+.+... ++..   
T Consensus       207 ~~~-~~l~s~s~dg~i~~wd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  283 (445)
T 2ovr_B          207 LHE-KRVVSGSRDATLRVWDIETGQCLH--VLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY  283 (445)
T ss_dssp             EET-TEEEEEETTSEEEEEESSSCCEEE--EEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEE
T ss_pred             ecC-CEEEEEeCCCEEEEEECCCCcEEE--EEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceE
Confidence            953 239999999999999999887443  223333332      244567788999999999876655433 4433   


Q ss_pred             -----CeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEcCCCCeeeeecCCCCCChhH
Q 008510          148 -----GQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYD  222 (563)
Q Consensus       148 -----g~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~~dg~~~~~~~~n~~~~~w~  222 (563)
                           |...+..+.+ +.+.+||..++...               ..+.++. ..+..+.+ ++..++.+..|+.+.+|+
T Consensus       284 ~~~~~~~~l~~~~~d-~~i~i~d~~~~~~~---------------~~~~~~~-~~v~~~~~-~~~~l~~~~~dg~i~vwd  345 (445)
T 2ovr_B          284 SLQFDGIHVVSGSLD-TSIRVWDVETGNCI---------------HTLTGHQ-SLTSGMEL-KDNILVSGNADSTVKIWD  345 (445)
T ss_dssp             EEEECSSEEEEEETT-SCEEEEETTTCCEE---------------EEECCCC-SCEEEEEE-ETTEEEEEETTSCEEEEE
T ss_pred             EEEECCCEEEEEeCC-CeEEEEECCCCCEE---------------EEEcCCc-ccEEEEEE-eCCEEEEEeCCCeEEEEE
Confidence                 3333333333 44567776554321               1234443 45666665 455788888888899998


Q ss_pred             HH
Q 008510          223 AA  224 (563)
Q Consensus       223 ~a  224 (563)
                      +.
T Consensus       346 ~~  347 (445)
T 2ovr_B          346 IK  347 (445)
T ss_dssp             TT
T ss_pred             CC
Confidence            74

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.71  E-value=2.2e-16  Score=163.06  Aligned_cols=217  Identities=15%  Similarity=0.142  Sum_probs=151.0

Q ss_pred             CEEEEEECCCcEEEEcC-CCce-----eEEEecC-----CCcEEEEEEc----CCC-e-EEEEeCCCcEEEEc--C----
Q 008510            4 VGIISASHDCTIRLWAL-TGQV-----LMEMVGH-----TAIVYSIDSH----ASG-L-IVSGSEDRFAKIWK--D----   60 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~-~g~~-----i~~l~gH-----~~~V~~v~~~----p~g-~-l~s~s~D~tvriWd--~----   60 (563)
                      ++|++|+.||+|++|++ ++++     +..+.+|     ...|.+++|+    |++ . +++++.|+.|++||  .    
T Consensus        82 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  161 (397)
T 1sq9_A           82 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE  161 (397)
T ss_dssp             EEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred             cEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccc
Confidence            89999999999999999 6676     8899999     5999999999    998 8 99999999999999  5    


Q ss_pred             --CceeE-----EE-------e-cCCcEEEEEEccCCcEEEEeCCCcEEEEEcCCCceeceeee-ccc---cccc-----
Q 008510           61 --GVCVQ-----SI-------E-HPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLEL-EAY---ASEL-----  116 (563)
Q Consensus        61 --~~~~~-----~l-------~-h~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~-~~~---~~~v-----  116 (563)
                        ++++.     .+       . |...|++++|+|++.+++|+.||.|++||+++++....... ..+   ...+     
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~  241 (397)
T 1sq9_A          162 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF  241 (397)
T ss_dssp             HHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEE
T ss_pred             cccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEE
Confidence              56665     55       3 67899999999988778999999999999998875433222 003   2222     


Q ss_pred             ---ceeEEeeccC---CceEEEeCCCCceeeec------------------------ccCCCeEEEEecCCCeEEEEEec
Q 008510          117 ---SQYKLCRKKV---GGLKLEDLPGLEALQIP------------------------GTNAGQTKVVREGDNGVAYSWDM  166 (563)
Q Consensus       117 ---~~~~~~~~~~---~~i~~~d~~~~~~l~~~------------------------g~~dg~~~l~~~~~~~~~~~wd~  166 (563)
                         ....+++..+   +.|++||+.....+...                        .+++|.+.+..+.+ +.+++||.
T Consensus       242 ~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~  320 (397)
T 1sq9_A          242 SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD-GKLRFWDV  320 (397)
T ss_dssp             CSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT-SEEEEEET
T ss_pred             CCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCC-CeEEEEEc
Confidence               2445566777   89999999766544322                        33445544444433 56678887


Q ss_pred             ccceEEEeCcEe------eCCCC--CCCceeecCcccCcEEEEEc-CCC----------CeeeeecCCCCCChhHHH
Q 008510          167 KEQKWDKLGEVV------DGPDD--GMNRPILDGIQYDYVFDVDI-GDG----------EPTRKLPYNRSDNPYDAA  224 (563)
Q Consensus       167 ~~~~w~~~g~v~------~~~~~--~~~~~~~~g~~~d~v~~vd~-~dg----------~~~~~~~~n~~~~~w~~a  224 (563)
                      ..+....  .+.      .+..+  ........+|. +.|.++.+ ++|          ..+++...|+.+.+|+++
T Consensus       321 ~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~  394 (397)
T 1sq9_A          321 KTKERIT--TLNMHCDDIEIEEDILAVDEHGDSLAE-PGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA  394 (397)
T ss_dssp             TTTEEEE--EEECCGGGCSSGGGCCCBCTTSCBCSS-CCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred             CCCceeE--EEecccCcccchhhhhccccccccccC-CceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence            6654322  222      10000  00011112223 67999999 887          689999999999999874

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.71  E-value=7.3e-17  Score=164.02  Aligned_cols=219  Identities=11%  Similarity=0.120  Sum_probs=149.9

Q ss_pred             CEEEEEECCCcEEEEcC-CCceeEEEec-----CCCcEEEEEEcCC----C-eEEEEeCCCcEEEEc--CCceeEEEe-c
Q 008510            4 VGIISASHDCTIRLWAL-TGQVLMEMVG-----HTAIVYSIDSHAS----G-LIVSGSEDRFAKIWK--DGVCVQSIE-H   69 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~-~g~~i~~l~g-----H~~~V~~v~~~p~----g-~l~s~s~D~tvriWd--~~~~~~~l~-h   69 (563)
                      ..+++++.|+.|++||+ +++.+..+.+     |...|++++|+|+    | .+++|+.|++|++||  +++++..+. |
T Consensus        35 ~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~  114 (366)
T 3k26_A           35 PLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGH  114 (366)
T ss_dssp             CEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESC
T ss_pred             ceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCC
Confidence            44666666779999999 6777777764     5578999999998    6 899999999999999  788888888 9


Q ss_pred             CCcEEEEEEcc-CCc-EEEEeCCCcEEEEEcCCCceeceee-ecccccccc--------eeEEeeccCCceEEEeCCCCc
Q 008510           70 PGCVWDAKFLE-NGD-IVTACSDGVTRIWTVHSDKVADSLE-LEAYASELS--------QYKLCRKKVGGLKLEDLPGLE  138 (563)
Q Consensus        70 ~~~V~~v~~~p-~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~-~~~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~  138 (563)
                      ...|.+++|+| ++. +++|+.||.|++||+++++...... +..+...+.        ...+++..++.|++||+...+
T Consensus       115 ~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  194 (366)
T 3k26_A          115 GNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKR  194 (366)
T ss_dssp             CSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHH
T ss_pred             CCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCc
Confidence            99999999999 787 9999999999999999887443221 123333332        355677788999999998654


Q ss_pred             eeeec-----------------------------ccCC--------CeEEEEecCCCeEEEEEecccceEEEeCcEeeCC
Q 008510          139 ALQIP-----------------------------GTNA--------GQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGP  181 (563)
Q Consensus       139 ~l~~~-----------------------------g~~d--------g~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~  181 (563)
                      .....                             ++..        |...+.. ..++.+.+|+...+.-. ........
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~-~~d~~i~~wd~~~~~~~-~~~~~~~~  272 (366)
T 3k26_A          195 MMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSK-SCENAIVCWKPGKMEDD-IDKIKPSE  272 (366)
T ss_dssp             HHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEE-CSSSEEEEEEESSTTCC-GGGCCTTC
T ss_pred             cccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEE-ecCCEEEEEeCCCcccc-ccccccCC
Confidence            32111                             1222        3333333 33466677886543210 00000000


Q ss_pred             CCCCCceeecCcccCcEEEEEc-CC--CCeeeeecCCCCCChhHHHH
Q 008510          182 DDGMNRPILDGIQYDYVFDVDI-GD--GEPTRKLPYNRSDNPYDAAD  225 (563)
Q Consensus       182 ~~~~~~~~~~g~~~d~v~~vd~-~d--g~~~~~~~~n~~~~~w~~a~  225 (563)
                      ........+.++. ..|..+.+ ++  |..++.+..|+.+.+|++..
T Consensus       273 ~~~~~~~~~~~~~-~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~  318 (366)
T 3k26_A          273 SNVTILGRFDYSQ-CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEV  318 (366)
T ss_dssp             CCEEEEEEEECSS-CCSSCCCCEECTTSSEEEEECTTSCEEEEECCS
T ss_pred             cchheeccccccC-CcEEEEEEcCCCCCcEEEEEecCCcEEEEECCC
Confidence            0000122344554 55777778 67  99999999999999999753

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.71  E-value=3.7e-16  Score=157.40  Aligned_cols=138  Identities=24%  Similarity=0.368  Sum_probs=109.9

Q ss_pred             CCCEEEEEECCCcEEEEcCCC--ceeEEEecCCCcEEEEEEcCCC---eEEEEeCCCcEEEEc--CCceeEEEe-cCCcE
Q 008510            2 PGVGIISASHDCTIRLWALTG--QVLMEMVGHTAIVYSIDSHASG---LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCV   73 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~~g--~~i~~l~gH~~~V~~v~~~p~g---~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V   73 (563)
                      ++..|++|+.|+.+++||..+  .....+.+|...|.+++|++++   .+++++.|++|++||  +++++..+. |.+.|
T Consensus       139 ~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v  218 (340)
T 4aow_A          139 DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYL  218 (340)
T ss_dssp             TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcE
Confidence            467899999999999999933  3445567899999999999875   689999999999999  777888887 99999


Q ss_pred             EEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeec----ccccccceeEEeeccCCceEEEeCCCCce
Q 008510           74 WDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELE----AYASELSQYKLCRKKVGGLKLEDLPGLEA  139 (563)
Q Consensus        74 ~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~i~~~d~~~~~~  139 (563)
                      .+++|+|+|+ +++|+.||.|++||+++.+........    ..........+++..++.|++||+++...
T Consensus       219 ~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~  289 (340)
T 4aow_A          219 NTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKII  289 (340)
T ss_dssp             EEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEE
T ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCCCeE
Confidence            9999999999 999999999999999998754332211    11111234556677889999999976543

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.71  E-value=1.2e-15  Score=160.70  Aligned_cols=201  Identities=19%  Similarity=0.347  Sum_probs=151.2

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEEE
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKF   78 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~~   78 (563)
                      ++.+++|+.||+|++||+ +++++.++.+|...|.+++++++ .+++|+.|++|++||  +++++..+. |...|.++++
T Consensus       169 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~  247 (445)
T 2ovr_B          169 DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK-RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY  247 (445)
T ss_dssp             TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT-EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCC-EEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE
Confidence            678999999999999999 89999999999999999999644 899999999999999  788888887 8889999999


Q ss_pred             ccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc------eeEEeeccCCceEEEeCCCCceeeec-ccCC---
Q 008510           79 LENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS------QYKLCRKKVGGLKLEDLPGLEALQIP-GTNA---  147 (563)
Q Consensus        79 ~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~------~~~~~~~~~~~i~~~d~~~~~~l~~~-g~~d---  147 (563)
                        +|. +++|+.||.|++||+++++...  .+..+...+.      ...+++..++.|++||+...+.+... ++..   
T Consensus       248 --~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~  323 (445)
T 2ovr_B          248 --DGRRVVSGAYDFMVKVWDPETETCLH--TLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS  323 (445)
T ss_dssp             --CSSCEEEEETTSCEEEEEGGGTEEEE--EECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEE
T ss_pred             --CCCEEEEEcCCCEEEEEECCCCcEeE--EecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEE
Confidence              566 9999999999999999887443  2233333332      34567788999999999887665443 3332   


Q ss_pred             -----CeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecC--cccCcEEEEEcCCCCeeeeecCCCCCCh
Q 008510          148 -----GQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDG--IQYDYVFDVDIGDGEPTRKLPYNRSDNP  220 (563)
Q Consensus       148 -----g~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g--~~~d~v~~vd~~dg~~~~~~~~n~~~~~  220 (563)
                           +...+..+. ++.+++||...+...               ..+.+  .+...|.++.+ ++..++.+..|+.+++
T Consensus       324 ~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~---------------~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~v~i  386 (445)
T 2ovr_B          324 GMELKDNILVSGNA-DSTVKIWDIKTGQCL---------------QTLQGPNKHQSAVTCLQF-NKNFVITSSDDGTVKL  386 (445)
T ss_dssp             EEEEETTEEEEEET-TSCEEEEETTTCCEE---------------EEECSTTSCSSCEEEEEE-CSSEEEEEETTSEEEE
T ss_pred             EEEEeCCEEEEEeC-CCeEEEEECCCCcEE---------------EEEccCCCCCCCEEEEEE-CCCEEEEEeCCCeEEE
Confidence                 223333333 345667776554321               11222  12356888888 4678999999999999


Q ss_pred             hHHHH
Q 008510          221 YDAAD  225 (563)
Q Consensus       221 w~~a~  225 (563)
                      |++..
T Consensus       387 wd~~~  391 (445)
T 2ovr_B          387 WDLKT  391 (445)
T ss_dssp             EETTT
T ss_pred             EECCC
Confidence            99753

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.71  E-value=3.1e-16  Score=180.05  Aligned_cols=133  Identities=12%  Similarity=0.146  Sum_probs=104.3

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCcee--EEE----e-----cCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CC-----
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVL--MEM----V-----GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DG-----   61 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i--~~l----~-----gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~-----   61 (563)
                      +|++|+|||.|++||+||+ ++...  ..+    .     +|...|++|+|+|+| .||+|+.|++|+||+  ++     
T Consensus       446 dg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~  525 (902)
T 2oaj_A          446 YGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSV  525 (902)
T ss_dssp             EEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---
T ss_pred             cCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCc
Confidence            3679999999999999999 55321  112    1     899999999999999 999999999999999  33     


Q ss_pred             ----------------------------------------ceeEEEe-cCCcEEEEEEccCCcEEEEeCCCcEEEEEcCC
Q 008510           62 ----------------------------------------VCVQSIE-HPGCVWDAKFLENGDIVTACSDGVTRIWTVHS  100 (563)
Q Consensus        62 ----------------------------------------~~~~~l~-h~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~  100 (563)
                                                              +++.++. |.+.|++|+|+|+|.+|+|+.|++|++||+++
T Consensus       526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG~lAsgs~D~tv~lwd~~~  605 (902)
T 2oaj_A          526 ENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIGFVGIAYAAGSLMLIDRRG  605 (902)
T ss_dssp             ------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTSEEEEEETTSEEEEEETTT
T ss_pred             cccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCcEEEEEeCCCcEEEEECCC
Confidence                                                    2466777 99999999999999889999999999999988


Q ss_pred             Cceeceeeec----ccccccc----------------eeEEeeccCCceEEEeC
Q 008510          101 DKVADSLELE----AYASELS----------------QYKLCRKKVGGLKLEDL  134 (563)
Q Consensus       101 ~~~~~~~~~~----~~~~~v~----------------~~~~~~~~~~~i~~~d~  134 (563)
                      +.......+.    .|...|.                ...+++..|++|++||+
T Consensus       606 ~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~  659 (902)
T 2oaj_A          606 PAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI  659 (902)
T ss_dssp             TEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred             CeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence            7654322222    2322232                34556778899999998

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.71  E-value=6.1e-16  Score=159.62  Aligned_cols=206  Identities=14%  Similarity=0.129  Sum_probs=147.3

Q ss_pred             CEEEEEECCCcEEEEcC-CCc------eeEEEecCCCcEEEEEEcCC----C----eEEEEeCCCcEEEEc--CCce---
Q 008510            4 VGIISASHDCTIRLWAL-TGQ------VLMEMVGHTAIVYSIDSHAS----G----LIVSGSEDRFAKIWK--DGVC---   63 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~-~g~------~i~~l~gH~~~V~~v~~~p~----g----~l~s~s~D~tvriWd--~~~~---   63 (563)
                      ++|++|+.||+|++|++ +++      ++..+.+|...|++++|+|+    |    .+++++.|++|++|+  +++.   
T Consensus        27 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~  106 (397)
T 1sq9_A           27 SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKK  106 (397)
T ss_dssp             SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCC
T ss_pred             CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccccc
Confidence            68999999999999999 666      78999999999999999998    5    699999999999999  5565   


Q ss_pred             --eEEEe-c-----CCcEEEEEEc----cCCc--EEEEeCCCcEEEEEcCC------Cceec-----eeee-----cccc
Q 008510           64 --VQSIE-H-----PGCVWDAKFL----ENGD--IVTACSDGVTRIWTVHS------DKVAD-----SLEL-----EAYA  113 (563)
Q Consensus        64 --~~~l~-h-----~~~V~~v~~~----p~g~--i~sgs~Dg~Irvwd~~~------~~~~~-----~~~~-----~~~~  113 (563)
                        +..+. |     ...|++++|+    |++.  +++|+.||.|++||+++      ++...     ....     ..+.
T Consensus       107 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (397)
T 1sq9_A          107 VIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPS  186 (397)
T ss_dssp             EEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSC
T ss_pred             ccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCC
Confidence              77777 7     4799999999    9886  78999999999999988      44332     1110     1122


Q ss_pred             ccc-------ceeEEeeccCCceEEEeCCCCceeeec-c---c---CCCeEEEEecCCC------------eEEEEEecc
Q 008510          114 SEL-------SQYKLCRKKVGGLKLEDLPGLEALQIP-G---T---NAGQTKVVREGDN------------GVAYSWDMK  167 (563)
Q Consensus       114 ~~v-------~~~~~~~~~~~~i~~~d~~~~~~l~~~-g---~---~dg~~~l~~~~~~------------~~~~~wd~~  167 (563)
                      ..+       ....+++..++.|++||++....+... +   +   ......+..++++            +.+++||..
T Consensus       187 ~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~  266 (397)
T 1sq9_A          187 QFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETE  266 (397)
T ss_dssp             CCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETT
T ss_pred             CCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECC
Confidence            211       125567788899999999866554333 3   3   3333333333222            445666654


Q ss_pred             cceEEEeCcEeeCCCCCCCceeecC-------------cccCcEEEEEc-CCCCeeeeecCCCCCChhHHHH
Q 008510          168 EQKWDKLGEVVDGPDDGMNRPILDG-------------IQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAAD  225 (563)
Q Consensus       168 ~~~w~~~g~v~~~~~~~~~~~~~~g-------------~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~  225 (563)
                      .+...               ..+.+             +. +.|.++.+ ++|..++....|+.+.+|++..
T Consensus       267 ~~~~~---------------~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  322 (397)
T 1sq9_A          267 FGERI---------------GSLSVPTHSSQASLGEFAHS-SWVMSLSFNDSGETLCSAGWDGKLRFWDVKT  322 (397)
T ss_dssp             TCCEE---------------EEECBC--------CCBSBS-SCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred             CCccc---------------ceeccCcccccccccccccC-CcEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            43211               12333             33 67999999 8999999999999999999853

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.70  E-value=9.7e-16  Score=156.47  Aligned_cols=176  Identities=22%  Similarity=0.291  Sum_probs=131.5

Q ss_pred             CCEEEEEECCCcEEEEcC-CCc--eeEEEecCCCcEEEEEEcCC--C-eEEEEeCCCcEEEEc--CC--ceeEEEe-cCC
Q 008510            3 GVGIISASHDCTIRLWAL-TGQ--VLMEMVGHTAIVYSIDSHAS--G-LIVSGSEDRFAKIWK--DG--VCVQSIE-HPG   71 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~--~i~~l~gH~~~V~~v~~~p~--g-~l~s~s~D~tvriWd--~~--~~~~~l~-h~~   71 (563)
                      +++|++|+.||+|++||+ +++  .+..+.+|...|.+++|+|+  + .+++++.|++|++||  .+  .....+. |..
T Consensus        69 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~  148 (379)
T 3jrp_A           69 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI  148 (379)
T ss_dssp             CSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTT
T ss_pred             CCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCC
Confidence            789999999999999999 666  78888999999999999998  7 899999999999999  33  2333444 888


Q ss_pred             cEEEEEEcc-------------CCc-EEEEeCCCcEEEEEcCCCcee--ceeeeccccccc-----------ceeEEeec
Q 008510           72 CVWDAKFLE-------------NGD-IVTACSDGVTRIWTVHSDKVA--DSLELEAYASEL-----------SQYKLCRK  124 (563)
Q Consensus        72 ~V~~v~~~p-------------~g~-i~sgs~Dg~Irvwd~~~~~~~--~~~~~~~~~~~v-----------~~~~~~~~  124 (563)
                      .|.+++|+|             ++. +++|+.||.|++||+++++..  ....+..+...+           ....+++.
T Consensus       149 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~  228 (379)
T 3jrp_A          149 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS  228 (379)
T ss_dssp             CEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred             ceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEe
Confidence            999999999             577 999999999999999876522  112233333221           35566778


Q ss_pred             cCCceEEEeCCCCc----------------eeeecccCCCeEEEEecCCCeEEEEEecc-cceEEEeCcEee
Q 008510          125 KVGGLKLEDLPGLE----------------ALQIPGTNAGQTKVVREGDNGVAYSWDMK-EQKWDKLGEVVD  179 (563)
Q Consensus       125 ~~~~i~~~d~~~~~----------------~l~~~g~~dg~~~l~~~~~~~~~~~wd~~-~~~w~~~g~v~~  179 (563)
                      .++.|++||+....                +.....+++|.+.+..+.+ +.+++|+.. .+.|..++.+..
T Consensus       229 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~  299 (379)
T 3jrp_A          229 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD-NKVTLWKENLEGKWEPAGEVHQ  299 (379)
T ss_dssp             TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESS-SSEEEEEEEETTEEEEEEEEC-
T ss_pred             CCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCC-CcEEEEeCCCCCccccccceec
Confidence            89999999997642                1112255677766666554 556788876 467776655543

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.70  E-value=5.9e-16  Score=177.77  Aligned_cols=206  Identities=9%  Similarity=0.064  Sum_probs=139.3

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAK   77 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~   77 (563)
                      +|++||+|+.||+|++|+. .+++... ..|...|.+++|+| | .+++++.|++|++||  +++++.++.|+..|++++
T Consensus        28 dg~~lAsgs~Dg~I~lw~~~~~~~~~~-~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~  105 (902)
T 2oaj_A           28 TQNLLAIATVTGEVHIYGQQQVEVVIK-LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSID  105 (902)
T ss_dssp             TTTEEEEEETTSEEEEECSTTCEEEEE-CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEECSSCEEEEE
T ss_pred             CCCEEEEEeCCCEEEEEeCCCcEEEEE-cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEE
Confidence            5789999999999999999 5555544 45889999999999 7 899999999999999  788999999888999999


Q ss_pred             EccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceeeecccCCCeEEEEecC
Q 008510           78 FLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREG  156 (563)
Q Consensus        78 ~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg~~~l~~~~  156 (563)
                      |+|+|+ +++|+.||.|++||+++++.. ...+.......  ..           ..-....+.....++++...++...
T Consensus       106 ~sp~g~~l~sgs~dg~V~lwd~~~~~~~-~~~i~~~~~~~--~~-----------~~~h~~~V~sl~~sp~~~~~l~~g~  171 (902)
T 2oaj_A          106 TDASLDWMLIGLQNGSMIVYDIDRDQLS-SFKLDNLQKSS--FF-----------PAARLSPIVSIQWNPRDIGTVLISY  171 (902)
T ss_dssp             CCTTCSEEEEEETTSCEEEEETTTTEEE-EEEECCHHHHH--TC-----------SSSCCCCCCEEEEETTEEEEEEEEC
T ss_pred             ECCCCCEEEEEcCCCcEEEEECCCCccc-cceeccccccc--cc-----------cccCCCCeEEEEEccCCCCEEEEEe
Confidence            999999 999999999999999988632 11110000000  00           0001112233334554332333333


Q ss_pred             CCeEEEEEecccceEEEeCcEe---eCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHHH
Q 008510          157 DNGVAYSWDMKEQKWDKLGEVV---DGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAAD  225 (563)
Q Consensus       157 ~~~~~~~wd~~~~~w~~~g~v~---~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~  225 (563)
                      +++.+ +||...+.....-...   +..+.........+| .+.|.++.| ++|..++++..|+.+++|++..
T Consensus       172 ~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h-~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~  242 (902)
T 2oaj_A          172 EYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKR-TPKVIQSLYHPNSLHIITIHEDNSLVFWDANS  242 (902)
T ss_dssp             SSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCB-CCCEEEEEECTTSSEEEEEETTCCEEEEETTT
T ss_pred             CCCcE-EEECCCCceEEEEecccCCcCCCccccccccccc-CCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence            44556 8887766543221100   000000000112222 377999999 9999999999999999999854

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.70  E-value=1.2e-15  Score=151.52  Aligned_cols=179  Identities=17%  Similarity=0.324  Sum_probs=136.5

Q ss_pred             CCCEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcC-CC-eEEEEeCCCcEEEEcCCceeEEEe--cCCcEEEEE
Q 008510            2 PGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHA-SG-LIVSGSEDRFAKIWKDGVCVQSIE--HPGCVWDAK   77 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p-~g-~l~s~s~D~tvriWd~~~~~~~l~--h~~~V~~v~   77 (563)
                      +++.+++|+.||+|++|| .++.+..+.+|...|.+++++| ++ .+++++.|+.|++||..+....+.  |...|.+++
T Consensus       113 ~~~~l~~~~~d~~i~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~  191 (313)
T 3odt_A          113 QDGVVISGSWDKTAKVWK-EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLA  191 (313)
T ss_dssp             ETTEEEEEETTSEEEEEE-TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEEEEE
T ss_pred             cCCEEEEEeCCCCEEEEc-CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEEEEE
Confidence            467899999999999999 8888899999999999999988 66 999999999999999667777776  778999999


Q ss_pred             EccCCcEEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceeeecccCCCeEEEEecCC
Q 008510           78 FLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVREGD  157 (563)
Q Consensus        78 ~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg~~~l~~~~~  157 (563)
                      |+|++.+++|+.||.|++||+++++...  .+.                       .....+.....+++|.  ++....
T Consensus       192 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~--~~~-----------------------~~~~~i~~~~~~~~~~--l~~~~~  244 (313)
T 3odt_A          192 VVDDGHFISCSNDGLIKLVDMHTGDVLR--TYE-----------------------GHESFVYCIKLLPNGD--IVSCGE  244 (313)
T ss_dssp             EEETTEEEEEETTSEEEEEETTTCCEEE--EEE-----------------------CCSSCEEEEEECTTSC--EEEEET
T ss_pred             EcCCCeEEEccCCCeEEEEECCchhhhh--hhh-----------------------cCCceEEEEEEecCCC--EEEEec
Confidence            9999999999999999999999876322  111                       1222233334555662  333334


Q ss_pred             CeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHHH
Q 008510          158 NGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAAD  225 (563)
Q Consensus       158 ~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~  225 (563)
                      ++.+++||...+...               ..+.++. +.|.++.+ ++|. ++....|+.+++|++..
T Consensus       245 dg~v~iwd~~~~~~~---------------~~~~~~~-~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~  296 (313)
T 3odt_A          245 DRTVRIWSKENGSLK---------------QVITLPA-ISIWSVDCMSNGD-IIVGSSDNLVRIFSQEK  296 (313)
T ss_dssp             TSEEEEECTTTCCEE---------------EEEECSS-SCEEEEEECTTSC-EEEEETTSCEEEEESCG
T ss_pred             CCEEEEEECCCCcee---------------EEEeccC-ceEEEEEEccCCC-EEEEeCCCcEEEEeCCC
Confidence            466778887665322               1233333 46889999 7777 77788999999999754

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.69  E-value=6.3e-16  Score=155.98  Aligned_cols=210  Identities=8%  Similarity=-0.003  Sum_probs=146.6

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCc---eeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCceeEEEe---cC
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQ---VLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIE---HP   70 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~---~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~~~l~---h~   70 (563)
                      +|++|++|+.||+|++|++ +++   ....+.+|...|.+++|+|++  .+++|+.|++|++|+  .......+.   |.
T Consensus        22 ~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~  101 (342)
T 1yfq_A           22 SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEAN  101 (342)
T ss_dssp             GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCC
T ss_pred             CCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCC
Confidence            4689999999999999999 555   356677999999999999987  599999999999999  333334443   77


Q ss_pred             CcEEEEEEccCCc-EEEEeCCCcEEEEEcCC---------Cceeceeeecccccccc------eeEEeeccCCceEEEeC
Q 008510           71 GCVWDAKFLENGD-IVTACSDGVTRIWTVHS---------DKVADSLELEAYASELS------QYKLCRKKVGGLKLEDL  134 (563)
Q Consensus        71 ~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~---------~~~~~~~~~~~~~~~v~------~~~~~~~~~~~i~~~d~  134 (563)
                      ..|++++|+| +. +++++.|+.|++||+++         ++......   +...+.      ...+++..++.|++||+
T Consensus       102 ~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~l~~~~~d~~i~i~d~  177 (342)
T 1yfq_A          102 LGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK---VKNKIFTMDTNSSRLIVGMNNSQVQWFRL  177 (342)
T ss_dssp             SCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS---SCCCEEEEEECSSEEEEEESTTEEEEEES
T ss_pred             CceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe---eCCceEEEEecCCcEEEEeCCCeEEEEEC
Confidence            8999999999 77 99999999999999886         44222111   222221      12556778899999999


Q ss_pred             CC-Ccee-------------eecccC-CCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcc-----
Q 008510          135 PG-LEAL-------------QIPGTN-AGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQ-----  194 (563)
Q Consensus       135 ~~-~~~l-------------~~~g~~-dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~-----  194 (563)
                      .. ....             ....++ +|...+..+.+ +.+.+|+...+.         ..........+.++.     
T Consensus       178 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d-g~i~i~~~~~~~---------~~~~~~~~~~~~~~~~~~~~  247 (342)
T 1yfq_A          178 PLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSID-GRVAVEFFDDQG---------DDYNSSKRFAFRCHRLNLKD  247 (342)
T ss_dssp             SCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETT-SEEEEEECCTTC---------CSTTCTTCEEEECCCCCTTC
T ss_pred             CccccccceeeecCCCCceeEEEECCCCCCEEEEEecC-CcEEEEEEcCCC---------cccccccceeeecccccccc
Confidence            87 3321             112344 55555554444 445566643320         000001223344442     


Q ss_pred             ---cCcEEEEEc-CCCCeeeeecCCCCCChhHHHH
Q 008510          195 ---YDYVFDVDI-GDGEPTRKLPYNRSDNPYDAAD  225 (563)
Q Consensus       195 ---~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~  225 (563)
                         ...|.++.+ ++|..++.+..|+.+.+|++..
T Consensus       248 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~  282 (342)
T 1yfq_A          248 TNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT  282 (342)
T ss_dssp             CSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred             cccceeEEEEEEcCCCCEEEEecCCceEEEEcCcc
Confidence               137899999 8999999999999999999864

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.69  E-value=1e-15  Score=161.84  Aligned_cols=202  Identities=19%  Similarity=0.252  Sum_probs=140.4

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcC--CC-eEEEEeCCCcEEEEc--CCce------------
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHA--SG-LIVSGSEDRFAKIWK--DGVC------------   63 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p--~g-~l~s~s~D~tvriWd--~~~~------------   63 (563)
                      ++..+++|+.||+|++||+ +++++.++.+|.+.|.+++|++  ++ .+++|+.|++|++||  ++..            
T Consensus       172 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~  251 (464)
T 3v7d_B          172 HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL  251 (464)
T ss_dssp             STTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSE
T ss_pred             CCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcce
Confidence            3458999999999999999 8999999999999999999984  66 899999999999999  3321            


Q ss_pred             -----------eEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccc--------eeEEe
Q 008510           64 -----------VQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELS--------QYKLC  122 (563)
Q Consensus        64 -----------~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~~~~~  122 (563)
                                 +..+. |...|.++  ++++. +++|+.||.|++||+++++...  .+..+...+.        ...++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s  327 (464)
T 3v7d_B          252 VFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLY--ILSGHTDRIYSTIYDHERKRCIS  327 (464)
T ss_dssp             EESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEE--EECCCSSCEEEEEEETTTTEEEE
T ss_pred             EeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEE--EecCCCCCEEEEEEcCCCCEEEE
Confidence                       34444 77788887  56677 9999999999999999887543  2333333332        35567


Q ss_pred             eccCCceEEEeCCCCceeeec-ccCCCeEEEE-------ecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcc
Q 008510          123 RKKVGGLKLEDLPGLEALQIP-GTNAGQTKVV-------REGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQ  194 (563)
Q Consensus       123 ~~~~~~i~~~d~~~~~~l~~~-g~~dg~~~l~-------~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~  194 (563)
                      +..++.|++||+...+.+... ++......+.       ..+.++.+.+||...+.-.                 +..+.
T Consensus       328 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~-----------------~~~~~  390 (464)
T 3v7d_B          328 ASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRK-----------------FSYHH  390 (464)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEE-----------------EEEEC
T ss_pred             EeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCcee-----------------eeecC
Confidence            788999999999877665543 5544333222       2223355667776543211                 11112


Q ss_pred             cCcEEEEEc-CCCCeeeeecCCCCCChhHHHH
Q 008510          195 YDYVFDVDI-GDGEPTRKLPYNRSDNPYDAAD  225 (563)
Q Consensus       195 ~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~  225 (563)
                      ...+..+.+ ++|..++.+. |+.+++|++..
T Consensus       391 ~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~  421 (464)
T 3v7d_B          391 TNLSAITTFYVSDNILVSGS-ENQFNIYNLRS  421 (464)
T ss_dssp             TTCCCEEEEEECSSEEEEEE-TTEEEEEETTT
T ss_pred             CCCccEEEEEeCCCEEEEec-CCeEEEEECCC
Confidence            122344445 5666666666 77788888753

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.68  E-value=3.1e-15  Score=177.73  Aligned_cols=102  Identities=25%  Similarity=0.494  Sum_probs=95.2

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCC--C-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHAS--G-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVW   74 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~--g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~   74 (563)
                      +|+++++|+.||+|++||+ +++++.++.+|...|.+++|+|+  + .+++|+.|++|++||  +++++.++. |...|+
T Consensus       668 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~  747 (1249)
T 3sfz_A          668 DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVN  747 (1249)
T ss_dssp             TSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEE
Confidence            5789999999999999999 89999999999999999999995  3 799999999999999  888888887 999999


Q ss_pred             EEEEccCCc-EEEEeCCCcEEEEEcCCCce
Q 008510           75 DAKFLENGD-IVTACSDGVTRIWTVHSDKV  103 (563)
Q Consensus        75 ~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~  103 (563)
                      +++|+|+|+ +++|+.||.|++||+++++.
T Consensus       748 ~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~  777 (1249)
T 3sfz_A          748 HCRFSPDDELLASCSADGTLRLWDVRSANE  777 (1249)
T ss_dssp             EEEECSSTTEEEEEESSSEEEEEEGGGTEE
T ss_pred             EEEEecCCCEEEEEECCCeEEEEeCCCCcc
Confidence            999999998 99999999999999988764

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.68  E-value=9.5e-15  Score=152.89  Aligned_cols=201  Identities=11%  Similarity=0.070  Sum_probs=137.9

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeEEEe--cCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEE
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLMEMV--GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWD   75 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~--gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~   75 (563)
                      ++.|++|. |++|+|||. +|++++.+.  +|...|++|+|+|+| .+++|+.|++|+|||  ++++++.+. |...+.+
T Consensus       116 ~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~  194 (420)
T 4gga_A          116 GNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGS  194 (420)
T ss_dssp             TSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             CCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEE
Confidence            45666664 999999999 898887665  678899999999999 999999999999999  888888888 8889999


Q ss_pred             EEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccccc--------ceeEEeeccCCceEEEeCCCCcee----ee
Q 008510           76 AKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL--------SQYKLCRKKVGGLKLEDLPGLEAL----QI  142 (563)
Q Consensus        76 v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v--------~~~~~~~~~~~~i~~~d~~~~~~l----~~  142 (563)
                      ++++  +. +++|+.|+.+++||.+..... ...+..+...+        .....++..++.+++|+....+..    ..
T Consensus       195 ~s~~--~~~l~sgs~d~~i~~~d~~~~~~~-~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~  271 (420)
T 4gga_A          195 LSWN--SYILSSGSRSGHIHHHDVRVAEHH-VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT  271 (420)
T ss_dssp             EEEE--TTEEEEEETTSEEEEEETTSSSCE-EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEE
T ss_pred             EeeC--CCEEEEEeCCCceeEeeeccccee-eEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeee
Confidence            8874  45 899999999999999875422 22233333322        245567788899999998754321    11


Q ss_pred             -----------cccCCC-eEEEE-ecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCe
Q 008510          143 -----------PGTNAG-QTKVV-REGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEP  208 (563)
Q Consensus       143 -----------~g~~dg-~~~l~-~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~  208 (563)
                                 ..++++ ..... .+..++.+.+||..++.....               +..+  ..+..+.+ +++..
T Consensus       272 ~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~---------------~~~~--~~v~~~~~~~~~~~  334 (420)
T 4gga_A          272 FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA---------------VDAH--SQVCSILWSPHYKE  334 (420)
T ss_dssp             ECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEE---------------EECS--SCEEEEEEETTTTE
T ss_pred             ecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccccee---------------eccc--cceeeeeecCCCCe
Confidence                       122222 22222 223446678888877643321               1111  23556666 66666


Q ss_pred             eeeec--CCCCCChhHHH
Q 008510          209 TRKLP--YNRSDNPYDAA  224 (563)
Q Consensus       209 ~~~~~--~n~~~~~w~~a  224 (563)
                      ++...  .|+.+.+|+..
T Consensus       335 lv~~sg~~d~~I~iwd~~  352 (420)
T 4gga_A          335 LISGHGFAQNQLVIWKYP  352 (420)
T ss_dssp             EEEEECTTTCCEEEEETT
T ss_pred             EEEEEecCCCEEEEEECC
Confidence            55543  56777888764

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.68  E-value=3.9e-15  Score=156.13  Aligned_cols=166  Identities=18%  Similarity=0.235  Sum_probs=120.2

Q ss_pred             CEEEEEECCCcEEEEcC-CCcee---------------------------------------EE-EecCCCcEEEEEEcC
Q 008510            4 VGIISASHDCTIRLWAL-TGQVL---------------------------------------ME-MVGHTAIVYSIDSHA   42 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~-~g~~i---------------------------------------~~-l~gH~~~V~~v~~~p   42 (563)
                      ..|++|+.|++|++|++ +++..                                       +. ..+|...|++++|+|
T Consensus       108 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  187 (447)
T 3dw8_B          108 AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS  187 (447)
T ss_dssp             SEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT
T ss_pred             ceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC
Confidence            68999999999999998 43321                                       23 368999999999999


Q ss_pred             CC-eEEEEeCCCcEEEEc-C--CceeEEE--------ecCCcEEEEEEccCC-c-EEEEeCCCcEEEEEcCCCceec--e
Q 008510           43 SG-LIVSGSEDRFAKIWK-D--GVCVQSI--------EHPGCVWDAKFLENG-D-IVTACSDGVTRIWTVHSDKVAD--S  106 (563)
Q Consensus        43 ~g-~l~s~s~D~tvriWd-~--~~~~~~l--------~h~~~V~~v~~~p~g-~-i~sgs~Dg~Irvwd~~~~~~~~--~  106 (563)
                      ++ .+++| .|++|++|| .  ++++..+        .|...|++++|+|+| . +++|+.||.|++||+++++...  .
T Consensus       188 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  266 (447)
T 3dw8_B          188 DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHS  266 (447)
T ss_dssp             TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTC
T ss_pred             CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccccee
Confidence            99 88888 899999999 3  4555543        288899999999998 6 9999999999999999877411  1


Q ss_pred             eeeccccc------------ccc--------eeEEeeccCCceEEEeCCC-Cceee------------------------
Q 008510          107 LELEAYAS------------ELS--------QYKLCRKKVGGLKLEDLPG-LEALQ------------------------  141 (563)
Q Consensus       107 ~~~~~~~~------------~v~--------~~~~~~~~~~~i~~~d~~~-~~~l~------------------------  141 (563)
                      ..+..+..            .+.        .+.+++.. +.|++||++. ...+.                        
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~  345 (447)
T 3dw8_B          267 KLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDK  345 (447)
T ss_dssp             EEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCC
T ss_pred             eEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccc
Confidence            12222221            222        33445555 9999999975 33221                        


Q ss_pred             --ecccCCCeEEEEecCCCeEEEEEecccceEE
Q 008510          142 --IPGTNAGQTKVVREGDNGVAYSWDMKEQKWD  172 (563)
Q Consensus       142 --~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~  172 (563)
                        ...+++|.+.+..+.+ +.+++||..++...
T Consensus       346 ~~~~~s~~~~~l~s~s~d-g~v~iwd~~~~~~~  377 (447)
T 3dw8_B          346 FECCWNGSDSVVMTGSYN-NFFRMFDRNTKRDI  377 (447)
T ss_dssp             CCEEECTTSSEEEEECST-TEEEEEETTTCCEE
T ss_pred             eEEEECCCCCEEEEeccC-CEEEEEEcCCCcce
Confidence              2355777776555544 77889998877543

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.67  E-value=1.2e-15  Score=158.50  Aligned_cols=157  Identities=13%  Similarity=0.272  Sum_probs=106.2

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCceeEEE---------
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSI---------   67 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~~~l---------   67 (563)
                      ||++|+|||.|++|||||+ ++.++..+.+|.+.|.+++|+|++  .+++|+.|++|++||  +++.....         
T Consensus       155 d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~  234 (393)
T 4gq1_A          155 AEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNP  234 (393)
T ss_dssp             EEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCC
T ss_pred             CCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccc
Confidence            5789999999999999999 788888889999999999999987  799999999999999  44332211         


Q ss_pred             -----------------ecCCcEEEEEEc-cCCc-EEEEeCCCcEEEEEcCCCceeceeeec-----------------c
Q 008510           68 -----------------EHPGCVWDAKFL-ENGD-IVTACSDGVTRIWTVHSDKVADSLELE-----------------A  111 (563)
Q Consensus        68 -----------------~h~~~V~~v~~~-p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~-----------------~  111 (563)
                                       .|...|.+++|. |+|. +++++.|+++++||+..++........                 .
T Consensus       235 ~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  314 (393)
T 4gq1_A          235 WLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISL  314 (393)
T ss_dssp             CSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECS
T ss_pred             eEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccc
Confidence                             155678999987 6888 999999999999999876532111000                 0


Q ss_pred             cc--------cc-cceeEEeeccCCceEEEeCCCCceeeec-ccCCCeEEEEecCCC
Q 008510          112 YA--------SE-LSQYKLCRKKVGGLKLEDLPGLEALQIP-GTNAGQTKVVREGDN  158 (563)
Q Consensus       112 ~~--------~~-v~~~~~~~~~~~~i~~~d~~~~~~l~~~-g~~dg~~~l~~~~~~  158 (563)
                      +.        .. -..+..++..++.|++||...+...... ++......+.+++++
T Consensus       315 ~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG  371 (393)
T 4gq1_A          315 FPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDG  371 (393)
T ss_dssp             SCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTS
T ss_pred             cCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCC
Confidence            00        00 1123455677899999998766544332 333333344444443

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.67  E-value=1.9e-15  Score=165.14  Aligned_cols=199  Identities=15%  Similarity=0.262  Sum_probs=153.0

Q ss_pred             EEEEEECCCcEEEEcC-CCceeEEEecCCC---cEEEEEEcCC-C-eEEEEeCCCcEEEEc--CCceeEEE-----ecCC
Q 008510            5 GIISASHDCTIRLWAL-TGQVLMEMVGHTA---IVYSIDSHAS-G-LIVSGSEDRFAKIWK--DGVCVQSI-----EHPG   71 (563)
Q Consensus         5 ~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~---~V~~v~~~p~-g-~l~s~s~D~tvriWd--~~~~~~~l-----~h~~   71 (563)
                      .+++|+.|++|++||. +++++.++.+|..   .|.+++|+|+ + .+++++.|++|++||  +++.+..+     .|..
T Consensus       175 ~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  254 (615)
T 1pgu_A          175 RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQG  254 (615)
T ss_dssp             EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCS
T ss_pred             EEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCC
Confidence            7999999999999999 8899999999999   9999999999 8 899999999999999  78889988     6888


Q ss_pred             cEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecc--cccc-------cceeEEeeccCCceEEEeCCCCceee
Q 008510           72 CVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEA--YASE-------LSQYKLCRKKVGGLKLEDLPGLEALQ  141 (563)
Q Consensus        72 ~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~--~~~~-------v~~~~~~~~~~~~i~~~d~~~~~~l~  141 (563)
                      .|.+++|+ ++. +++++.|+.|++||+++++.........  ....       -....+++..++.+.+||+...+.+.
T Consensus       255 ~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~  333 (615)
T 1pgu_A          255 GIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLK  333 (615)
T ss_dssp             CEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEE
T ss_pred             ceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEE
Confidence            99999999 888 9999999999999999887554333221  0111       23455677888999999998765544


Q ss_pred             ec-ccCCCeEEEEe-----cCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEcCCCCeeeeecCC
Q 008510          142 IP-GTNAGQTKVVR-----EGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYN  215 (563)
Q Consensus       142 ~~-g~~dg~~~l~~-----~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~~dg~~~~~~~~n  215 (563)
                      .. ++.+....+..     ...++.+.+|+..        .+            ..+|. +.|.++.++++..++....|
T Consensus       334 ~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~--------~~------------~~~~~-~~v~~~~~~~~~~l~~~~~d  392 (615)
T 1pgu_A          334 TISGHNKGITALTVNPLISGSYDGRIMEWSSS--------SM------------HQDHS-NLIVSLDNSKAQEYSSISWD  392 (615)
T ss_dssp             EECCCSSCEEEEETTTTEEEETTSCEEETTTT--------EE------------ECCCC-SCEEEEECCSTTCCEEEETT
T ss_pred             EEeCCCCCEEEEEecCcEEECCCCeEEEEEch--------hh------------cCccc-CceEEEEECCCcEEEEEeCC
Confidence            43 55555444433     2223444556543        01            02333 67889999778889999999


Q ss_pred             CCCChhHHHH
Q 008510          216 RSDNPYDAAD  225 (563)
Q Consensus       216 ~~~~~w~~a~  225 (563)
                      +.+..|++..
T Consensus       393 ~~i~~~~~~~  402 (615)
T 1pgu_A          393 DTLKVNGITK  402 (615)
T ss_dssp             TEEEETTEEE
T ss_pred             CCEEEEEccc
Confidence            9999998753

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.67  E-value=4.7e-16  Score=165.21  Aligned_cols=203  Identities=9%  Similarity=0.026  Sum_probs=132.1

Q ss_pred             CCCEEEEEECCCcEE-----------------E----------EcC-CCceeEEEe-cCCCcEEEEEEcCCC-eEEEEeC
Q 008510            2 PGVGIISASHDCTIR-----------------L----------WAL-TGQVLMEMV-GHTAIVYSIDSHASG-LIVSGSE   51 (563)
Q Consensus         2 ~g~~l~s~s~DgtIr-----------------l----------Wd~-~g~~i~~l~-gH~~~V~~v~~~p~g-~l~s~s~   51 (563)
                      ||+++||+|.|++||                 +          |++ +++....+. +|...|++++|+|+| .+++++.
T Consensus        26 DG~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~  105 (588)
T 2j04_A           26 DGTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSN  105 (588)
T ss_dssp             TSCEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEET
T ss_pred             CCCEEEEEcCCceeecccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeC
Confidence            689999999999994                 1          223 222222233 678899999999999 8999999


Q ss_pred             CCcEEEEcCCceeEEEecCC-----cEEEEEEccCCc-EEEEeCCCcEEEEEcCCCce-----eceeee----ccccccc
Q 008510           52 DRFAKIWKDGVCVQSIEHPG-----CVWDAKFLENGD-IVTACSDGVTRIWTVHSDKV-----ADSLEL----EAYASEL  116 (563)
Q Consensus        52 D~tvriWd~~~~~~~l~h~~-----~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~-----~~~~~~----~~~~~~v  116 (563)
                      ||+|+||+...++..+.|..     .|++++|+|+|+ +++|+.||+|++||+.++..     .....+    .+|...|
T Consensus       106 dg~V~iwd~~~~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V  185 (588)
T 2j04_A          106 NGNVSVFKDNKMLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWV  185 (588)
T ss_dssp             TSCEEEEETTEEEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCE
T ss_pred             CCcEEEEeCCceeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccE
Confidence            99999999333766666443     599999999999 99999999999999998752     011222    2222232


Q ss_pred             -------ceeEEeeccCCceEEEeCCCCcee---e-e-cccCCCeEEEEec-------CCCeEEEEEecccceEEEeCcE
Q 008510          117 -------SQYKLCRKKVGGLKLEDLPGLEAL---Q-I-PGTNAGQTKVVRE-------GDNGVAYSWDMKEQKWDKLGEV  177 (563)
Q Consensus       117 -------~~~~~~~~~~~~i~~~d~~~~~~l---~-~-~g~~dg~~~l~~~-------~~~~~~~~wd~~~~~w~~~g~v  177 (563)
                             +. .+++..|+.+++||+.+....   . . .+|.+....+.++       .+ +.+++|+...+.-.     
T Consensus       186 ~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa~~-~tIkLWd~~~~~~~-----  258 (588)
T 2j04_A          186 THIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLTCP-GYVHKIDLKNYSIS-----  258 (588)
T ss_dssp             EEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEECS-SEEEEEETTTTEEE-----
T ss_pred             EEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEECCEEEEEeC-CeEEEEECCCCeEE-----
Confidence                   34 567788999999999877632   1 2 2444333222222       22 45566665443221     


Q ss_pred             eeCCCCCCCceeecCcccCcEEEEEc---CCCCeeeeecCCCCCChhHH
Q 008510          178 VDGPDDGMNRPILDGIQYDYVFDVDI---GDGEPTRKLPYNRSDNPYDA  223 (563)
Q Consensus       178 ~~~~~~~~~~~~~~g~~~d~v~~vd~---~dg~~~~~~~~n~~~~~w~~  223 (563)
                                ....||. +.|.++.+   +||..++....++. ++|..
T Consensus       259 ----------~~~~gh~-~~V~~va~~~s~d~~~La~a~edG~-klw~~  295 (588)
T 2j04_A          259 ----------SLKTGSL-ENFHIIPLNHEKESTILLMSNKTSY-KVLLE  295 (588)
T ss_dssp             ----------EEECSCC-SCCCEEEETTCSSCEEEEECSSCEE-EEEES
T ss_pred             ----------EEEcCCC-ceEEEEEeeeCCCCCEEEEEcCCCC-EEEee
Confidence                      1112543 66777777   34444444444666 77765

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.66  E-value=3.5e-15  Score=169.04  Aligned_cols=167  Identities=20%  Similarity=0.306  Sum_probs=128.2

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CC-ceeEEEe-cCCcEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DG-VCVQSIE-HPGCVWD   75 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~-~~~~~l~-h~~~V~~   75 (563)
                      +|++|++|+.||+|++||+ +++++.++.+|.+.|.+++|+|++ .+++|+.|++|++|+  ++ .+.+.+. |...|.+
T Consensus        66 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~  145 (814)
T 3mkq_A           66 RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMC  145 (814)
T ss_dssp             GGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEE
Confidence            4789999999999999999 899999999999999999999999 899999999999999  44 6667776 8889999


Q ss_pred             EEEcc-CCc-EEEEeCCCcEEEEEcCCCceeceeeecccccc----------cceeEEeeccCCceEEEeCCCCceeee-
Q 008510           76 AKFLE-NGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASE----------LSQYKLCRKKVGGLKLEDLPGLEALQI-  142 (563)
Q Consensus        76 v~~~p-~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~~i~~~d~~~~~~l~~-  142 (563)
                      ++|+| ++. +++|+.||.|++||+++++........ +...          -....+++..++.|++||+.....+.. 
T Consensus       146 ~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~  224 (814)
T 3mkq_A          146 VAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG-QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL  224 (814)
T ss_dssp             EEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECC-CTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecC-CCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE
Confidence            99999 777 999999999999999877633221111 1011          234566778889999999976654332 


Q ss_pred             ----------cccCCCeEEEEecCCCeEEEEEecccce
Q 008510          143 ----------PGTNAGQTKVVREGDNGVAYSWDMKEQK  170 (563)
Q Consensus       143 ----------~g~~dg~~~l~~~~~~~~~~~wd~~~~~  170 (563)
                                ..+++|...+..+.+ +.+++|+..++.
T Consensus       225 ~~~~~~v~~~~~~~~~~~l~~~~~d-g~v~vwd~~~~~  261 (814)
T 3mkq_A          225 EGHMSNVSFAVFHPTLPIIISGSED-GTLKIWNSSTYK  261 (814)
T ss_dssp             ECCSSCEEEEEECSSSSEEEEEETT-SCEEEEETTTCS
T ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCC-CeEEEEECCCCc
Confidence                      244555554444444 455678876543

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.66  E-value=2.1e-14  Score=143.00  Aligned_cols=132  Identities=14%  Similarity=0.182  Sum_probs=103.4

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeEEEe--cCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEE
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLMEMV--GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWD   75 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~--gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~   75 (563)
                      ++.|++| .|++|||||+ +|++++++.  +|...|.+++|+|+| .+++|+.|++|++|+  ++++++.+. |...+.+
T Consensus        36 ~~~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~  114 (318)
T 4ggc_A           36 GNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGS  114 (318)
T ss_dssp             TSEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE
T ss_pred             CCEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEE
Confidence            4556655 5999999999 899888775  678889999999999 999999999999999  888888888 8888877


Q ss_pred             EEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccc--------cceeEEeeccCCceEEEeCCCCc
Q 008510           76 AKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASE--------LSQYKLCRKKVGGLKLEDLPGLE  138 (563)
Q Consensus        76 v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~~i~~~d~~~~~  138 (563)
                      +.+  ++. +++|+.++.+++|+....... ...+..+...        .....+++..++.|++||+...+
T Consensus       115 ~~~--~~~~l~s~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  183 (318)
T 4ggc_A          115 LSW--NSYILSSGSRSGHIHHHDVRVAEHH-VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE  183 (318)
T ss_dssp             EEE--ETTEEEEEETTSEEEEEETTSSSCE-EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBT
T ss_pred             eec--CCCEEEEEecCCceEeeecCCCcee-EEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCc
Confidence            655  455 899999999999999876522 1222222222        22456678889999999997653

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.66  E-value=6.4e-16  Score=157.17  Aligned_cols=178  Identities=10%  Similarity=0.009  Sum_probs=130.6

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc-C----------CceeEEEe-
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK-D----------GVCVQSIE-   68 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd-~----------~~~~~~l~-   68 (563)
                      ++.++++|+.||+|++||+ +++++.++.  ...|.++.++|+  +++++.|++|++|+ .          ++.++.+. 
T Consensus        47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~  122 (343)
T 3lrv_A           47 DKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEV  122 (343)
T ss_dssp             EEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCCcceeEEeec
Confidence            4678999999999999999 888888886  566888888888  99999999999997 3          23355554 


Q ss_pred             -cCCcEEEEEEcc--CCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCC-CCceeeec
Q 008510           69 -HPGCVWDAKFLE--NGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLP-GLEALQIP  143 (563)
Q Consensus        69 -h~~~V~~v~~~p--~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~-~~~~l~~~  143 (563)
                       |.+.|.+++|+|  +++ +++|+.||+|++||+++++....                         .... ...+....
T Consensus       123 ~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-------------------------~~~~~~~~i~~~~  177 (343)
T 3lrv_A          123 DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIV-------------------------HSAKSDVEYSSGV  177 (343)
T ss_dssp             CCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEE-------------------------ECCCSSCCCCEEE
T ss_pred             CCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEE-------------------------EecCCCCceEEEE
Confidence             657899999999  888 89999999999999998873211                         1000 11122334


Q ss_pred             ccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecC-cccCcEEEEEc-CCCCeeeeecCCCCCChh
Q 008510          144 GTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDG-IQYDYVFDVDI-GDGEPTRKLPYNRSDNPY  221 (563)
Q Consensus       144 g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g-~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w  221 (563)
                      .+++|.+.+..+.+ +.+.+||..++..              ....+.+ |. +.|.++.| ++|..++....+ .+++|
T Consensus       178 ~~pdg~~lasg~~d-g~i~iwd~~~~~~--------------~~~~~~~~h~-~~v~~l~fs~~g~~l~s~~~~-~v~iw  240 (343)
T 3lrv_A          178 LHKDSLLLALYSPD-GILDVYNLSSPDQ--------------ASSRFPVDEE-AKIKEVKFADNGYWMVVECDQ-TVVCF  240 (343)
T ss_dssp             ECTTSCEEEEECTT-SCEEEEESSCTTS--------------CCEECCCCTT-SCEEEEEECTTSSEEEEEESS-BEEEE
T ss_pred             ECCCCCEEEEEcCC-CEEEEEECCCCCC--------------CccEEeccCC-CCEEEEEEeCCCCEEEEEeCC-eEEEE
Confidence            66777766665555 5667888765421              1123455 44 78999999 899988888844 99999


Q ss_pred             HHHH
Q 008510          222 DAAD  225 (563)
Q Consensus       222 ~~a~  225 (563)
                      ++..
T Consensus       241 d~~~  244 (343)
T 3lrv_A          241 DLRK  244 (343)
T ss_dssp             ETTS
T ss_pred             EcCC
Confidence            9753

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.66  E-value=2e-15  Score=154.55  Aligned_cols=98  Identities=16%  Similarity=0.258  Sum_probs=87.7

Q ss_pred             EEEE--EECCCcEEEEcC-CCc----------------eeEEEecCCCcEEEEEEcCCC-eEEEEeCCCc-EEEEc--CC
Q 008510            5 GIIS--ASHDCTIRLWAL-TGQ----------------VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRF-AKIWK--DG   61 (563)
Q Consensus         5 ~l~s--~s~DgtIrlWd~-~g~----------------~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~t-vriWd--~~   61 (563)
                      .++.  |+.||+|++||+ +++                ++.++.+|.+.|.+++|+|+| .++||+.|++ |++||  ++
T Consensus       149 ~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~  228 (355)
T 3vu4_A          149 LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG  228 (355)
T ss_dssp             EEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC
T ss_pred             EEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence            4444  588999999999 544                278899999999999999999 9999999999 99999  78


Q ss_pred             ceeEEEe---cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCc
Q 008510           62 VCVQSIE---HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDK  102 (563)
Q Consensus        62 ~~~~~l~---h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~  102 (563)
                      +++.++.   |...|++++|+|+|. +++|+.|++|++||++.+.
T Consensus       229 ~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~  273 (355)
T 3vu4_A          229 VLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ  273 (355)
T ss_dssp             CEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred             cEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence            9999997   888999999999999 9999999999999998764

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.65  E-value=6.7e-15  Score=160.72  Aligned_cols=201  Identities=14%  Similarity=0.152  Sum_probs=153.4

Q ss_pred             CCCEEEEEECC----CcEEEEcCCCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCceeEEEe-cCC-
Q 008510            2 PGVGIISASHD----CTIRLWALTGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIE-HPG-   71 (563)
Q Consensus         2 ~g~~l~s~s~D----gtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~~~l~-h~~-   71 (563)
                      +|+++++++.|    +.|++|| .++++..+.+|...|++++|+|++  .+++++.|++|++||  +++++..+. |.. 
T Consensus       127 ~~~~l~~~~~~~~~~~~v~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~  205 (615)
T 1pgu_A          127 EGRRLCVVGEGRDNFGVFISWD-SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQ  205 (615)
T ss_dssp             TSSEEEEEECCSSCSEEEEETT-TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCT
T ss_pred             CCCEEEEeccCCCCccEEEEEE-CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCC
Confidence            57899999998    7999999 778889999999999999999998  699999999999999  778888888 888 


Q ss_pred             --cEEEEEEccC-Cc-EEEEeCCCcEEEEEcCCCceeceeeec---cccccc-------ceeEEeeccCCceEEEeCCCC
Q 008510           72 --CVWDAKFLEN-GD-IVTACSDGVTRIWTVHSDKVADSLELE---AYASEL-------SQYKLCRKKVGGLKLEDLPGL  137 (563)
Q Consensus        72 --~V~~v~~~p~-g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~---~~~~~v-------~~~~~~~~~~~~i~~~d~~~~  137 (563)
                        .|++++|+|+ |+ +++|+.||.|++||+++++...... .   .+...+       ....+++..++.+++||+...
T Consensus       206 ~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~  284 (615)
T 1pgu_A          206 GSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE-DDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS  284 (615)
T ss_dssp             TCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECC-BTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTT
T ss_pred             CceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEec-ccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCC
Confidence              8999999999 88 8999999999999999887543321 1   233322       234556777899999999876


Q ss_pred             ceeeec-cc-------------CCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc
Q 008510          138 EALQIP-GT-------------NAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI  203 (563)
Q Consensus       138 ~~l~~~-g~-------------~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~  203 (563)
                      +.+... .+             +++...+..+.+ +.+++|+...+..               ...+.+|. +.|.++.+
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~i~~~d~~~~~~---------------~~~~~~~~-~~v~~~~~  347 (615)
T 1pgu_A          285 KCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD-GTLNFYELGHDEV---------------LKTISGHN-KGITALTV  347 (615)
T ss_dssp             EEEEEEECCTTCGGGCEEEEEEEETTEEEEEETT-SCEEEEETTEEEE---------------EEEECCCS-SCEEEEET
T ss_pred             cEEEEEcCCCCcccCceeEEEeCCCCeEEEEECC-CCEEEEECCCCcE---------------EEEEeCCC-CCEEEEEe
Confidence            654433 22             134444444443 4566777654321               12244554 67899999


Q ss_pred             CCCCeeeeecCCCCCChhHHH
Q 008510          204 GDGEPTRKLPYNRSDNPYDAA  224 (563)
Q Consensus       204 ~dg~~~~~~~~n~~~~~w~~a  224 (563)
                       ..  ++....|+.+++|+..
T Consensus       348 -~~--l~~~~~dg~i~~w~~~  365 (615)
T 1pgu_A          348 -NP--LISGSYDGRIMEWSSS  365 (615)
T ss_dssp             -TT--TEEEETTSCEEETTTT
T ss_pred             -cC--cEEECCCCeEEEEEch
Confidence             44  9999999999999976

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.65  E-value=6.1e-15  Score=149.72  Aligned_cols=181  Identities=17%  Similarity=0.274  Sum_probs=135.8

Q ss_pred             eeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEc
Q 008510           24 VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTV   98 (563)
Q Consensus        24 ~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~   98 (563)
                      ...++.+|.+.|.+++|+|+| .+++|+.|+.|++||  +++.+..+. |...|++++|+|+++ +++++.||.|++||+
T Consensus        24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~  103 (369)
T 3zwl_B           24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV  103 (369)
T ss_dssp             EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred             ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence            345689999999999999999 999999999999999  888888888 889999999999998 999999999999999


Q ss_pred             CCCceeceeeecccccccc--------eeEEeeccC-----CceEEEeCCCCc------------------------eee
Q 008510           99 HSDKVADSLELEAYASELS--------QYKLCRKKV-----GGLKLEDLPGLE------------------------ALQ  141 (563)
Q Consensus        99 ~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~-----~~i~~~d~~~~~------------------------~l~  141 (563)
                      ++++......   +...+.        ...+.+..+     +.+.+||+....                        ...
T Consensus       104 ~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (369)
T 3zwl_B          104 SNGQCVATWK---SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV  180 (369)
T ss_dssp             TTCCEEEEEE---CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEE
T ss_pred             CCCcEEEEee---cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeE
Confidence            9987554332   222222        334444555     899999986542                        122


Q ss_pred             ecccCCCeEEEEecCCCeEEEEEeccc-ceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCC
Q 008510          142 IPGTNAGQTKVVREGDNGVAYSWDMKE-QKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDN  219 (563)
Q Consensus       142 ~~g~~dg~~~l~~~~~~~~~~~wd~~~-~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~  219 (563)
                      ...+++|...++...+ +.+++||... +..               ...+.++. +.|.++.+ ++|..++....|+.+.
T Consensus       181 ~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~---------------~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~  243 (369)
T 3zwl_B          181 AGWSTKGKYIIAGHKD-GKISKYDVSNNYEY---------------VDSIDLHE-KSISDMQFSPDLTYFITSSRDTNSF  243 (369)
T ss_dssp             EEECGGGCEEEEEETT-SEEEEEETTTTTEE---------------EEEEECCS-SCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             EEEcCCCCEEEEEcCC-CEEEEEECCCCcEe---------------EEEEecCC-CceeEEEECCCCCEEEEecCCceEE
Confidence            2245566666555554 5667888755 221               12233443 56889999 8999999999999999


Q ss_pred             hhHHH
Q 008510          220 PYDAA  224 (563)
Q Consensus       220 ~w~~a  224 (563)
                      +|++.
T Consensus       244 v~d~~  248 (369)
T 3zwl_B          244 LVDVS  248 (369)
T ss_dssp             EEETT
T ss_pred             EEECC
Confidence            99874

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.65  E-value=6e-15  Score=155.84  Aligned_cols=138  Identities=12%  Similarity=0.011  Sum_probs=109.6

Q ss_pred             CCCEE-EEEECCCcEEEEcCC---CceeEEEe--cCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCcee----EEEe
Q 008510            2 PGVGI-ISASHDCTIRLWALT---GQVLMEMV--GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCV----QSIE   68 (563)
Q Consensus         2 ~g~~l-~s~s~DgtIrlWd~~---g~~i~~l~--gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~----~~l~   68 (563)
                      +|++| ++|+.||+|++||+.   ++++..+.  +|...|++++|+|+| .+++|+.|+.|++|+  +++..    ..+.
T Consensus       113 d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~  192 (450)
T 2vdu_B          113 DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPIL  192 (450)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSE
T ss_pred             CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeee
Confidence            46775 899999999999984   67888876  677999999999999 999999999999999  44433    3555


Q ss_pred             -cCCcEEEEEEccC---Cc-EEEEeCCCcEEEEEcCCCceeceeeeccccccc-------ceeEEeeccCCceEEEeCCC
Q 008510           69 -HPGCVWDAKFLEN---GD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL-------SQYKLCRKKVGGLKLEDLPG  136 (563)
Q Consensus        69 -h~~~V~~v~~~p~---g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~~i~~~d~~~  136 (563)
                       |...|++++|+|+   +. +++|+.|+.|++||+++++..... +..+...+       ....+++..++.|++||+.+
T Consensus       193 ~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~~h~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~  271 (450)
T 2vdu_B          193 GHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKW-LFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKT  271 (450)
T ss_dssp             ECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEE-CCCCSSCEEEEEECSTTEEEEEESSSEEEEEETTT
T ss_pred             cccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeee-ecCCCCceEEEEECCCCEEEEEeCCCeEEEEECCC
Confidence             8889999999999   87 999999999999999988643221 22232222       34556777889999999987


Q ss_pred             Ccee
Q 008510          137 LEAL  140 (563)
Q Consensus       137 ~~~l  140 (563)
                      .+.+
T Consensus       272 ~~~~  275 (450)
T 2vdu_B          272 GKNL  275 (450)
T ss_dssp             CCEE
T ss_pred             CcEe
Confidence            7643

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.65  E-value=3.4e-15  Score=149.42  Aligned_cols=101  Identities=18%  Similarity=0.214  Sum_probs=79.3

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCC---CcEEEEEEcCCC-eE------------EEEeCCCcEEEEc--CCc
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHT---AIVYSIDSHASG-LI------------VSGSEDRFAKIWK--DGV   62 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~---~~V~~v~~~p~g-~l------------~s~s~D~tvriWd--~~~   62 (563)
                      ++.+|+|||.|++||+||+ +|++++++.+|.   ..+.+++|+|+| .+            +||+.|++||+||  +++
T Consensus       192 ~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk  271 (356)
T 2w18_A          192 MQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL  271 (356)
T ss_dssp             STTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTE
T ss_pred             CCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE
Confidence            4588999999999999999 899999999765   367788999999 54            6789999999999  778


Q ss_pred             eeEEEe------cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCcee
Q 008510           63 CVQSIE------HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVA  104 (563)
Q Consensus        63 ~~~~l~------h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~  104 (563)
                      ++.++.      |...+.+..++  |. +++|+.|++||+||+.+++..
T Consensus       272 ~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l  318 (356)
T 2w18_A          272 SVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCT  318 (356)
T ss_dssp             EEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEE
T ss_pred             EEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEE
Confidence            777652      44445444443  66 899999999999999999844

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.64  E-value=8.8e-15  Score=150.82  Aligned_cols=204  Identities=11%  Similarity=0.052  Sum_probs=142.8

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eE-EEEeCCCcEEEEc--CCceeEEEecCCcEEEEE
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LI-VSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAK   77 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l-~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~   77 (563)
                      +..+++++.|++|++||+ +++++..+.+|.. +.+++|+|+| .+ ++++.|++|++||  ++++++.+.+...+.+++
T Consensus         2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~   80 (391)
T 1l0q_A            2 TFAYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVA   80 (391)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEE
T ss_pred             CEEEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceE
Confidence            356899999999999999 8899999988765 8999999999 54 7888999999999  788888888667999999


Q ss_pred             EccCCc-E-EEEeCCCcEEEEEcCCCceeceeeecc----ccccc-c-eeEEeeccCCceEEEeCCCCceeee-------
Q 008510           78 FLENGD-I-VTACSDGVTRIWTVHSDKVADSLELEA----YASEL-S-QYKLCRKKVGGLKLEDLPGLEALQI-------  142 (563)
Q Consensus        78 ~~p~g~-i-~sgs~Dg~Irvwd~~~~~~~~~~~~~~----~~~~v-~-~~~~~~~~~~~i~~~d~~~~~~l~~-------  142 (563)
                      |+|+|+ + ++++.|+.|++||+.+++.........    ..-.. . .+.++...++.|.+||+.+.+.+..       
T Consensus        81 ~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~  160 (391)
T 1l0q_A           81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSP  160 (391)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSE
T ss_pred             ECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCc
Confidence            999998 6 455567999999999987543322111    11111 1 2335667789999999977654332       


Q ss_pred             ---cccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeec---CC
Q 008510          143 ---PGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLP---YN  215 (563)
Q Consensus       143 ---~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~---~n  215 (563)
                         ..+++|...++....++.+++||...+.....-   .            .  .+.+..+.+ ++|+.++...   .+
T Consensus       161 ~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~---~------------~--~~~~~~~~~~~~g~~l~~~~~~~~~  223 (391)
T 1l0q_A          161 KGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTV---K------------V--EAAPSGIAVNPEGTKAYVTNVDKYF  223 (391)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE---E------------C--SSEEEEEEECTTSSEEEEEEECSSC
T ss_pred             ceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEE---e------------c--CCCccceEECCCCCEEEEEecCcCC
Confidence               256677766555555577888998766433210   0            0  123455555 5565555554   45


Q ss_pred             CCCChhHHH
Q 008510          216 RSDNPYDAA  224 (563)
Q Consensus       216 ~~~~~w~~a  224 (563)
                      ..+.+|+..
T Consensus       224 ~~v~~~d~~  232 (391)
T 1l0q_A          224 NTVSMIDTG  232 (391)
T ss_dssp             CEEEEEETT
T ss_pred             CcEEEEECC
Confidence            555666553

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.64  E-value=2e-14  Score=148.13  Aligned_cols=140  Identities=15%  Similarity=0.213  Sum_probs=109.5

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CC-ceeEEE---------
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DG-VCVQSI---------   67 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~-~~~~~l---------   67 (563)
                      +.++++|+.||.|++||+ +++++..+.+|...|.+++|+|++  .+++|+.|++|++||  .+ .++..+         
T Consensus       156 ~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  235 (408)
T 4a11_B          156 HCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQ  235 (408)
T ss_dssp             CCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCC
T ss_pred             CcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccce
Confidence            458999999999999999 789999999999999999999998  489999999999999  32 355554         


Q ss_pred             ------e-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccc-----------ccccceeEEeeccCCc
Q 008510           68 ------E-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAY-----------ASELSQYKLCRKKVGG  128 (563)
Q Consensus        68 ------~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~~  128 (563)
                            . |...|.+++|+|+|. +++|+.||.|++||+++++..........           ........+....++.
T Consensus       236 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (408)
T 4a11_B          236 AVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGST  315 (408)
T ss_dssp             CTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTE
T ss_pred             eeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCE
Confidence                  2 777999999999998 99999999999999998764321111000           0111234455567789


Q ss_pred             eEEEeCCCCceeee
Q 008510          129 LKLEDLPGLEALQI  142 (563)
Q Consensus       129 i~~~d~~~~~~l~~  142 (563)
                      +.+||+...+.+..
T Consensus       316 i~v~d~~~~~~~~~  329 (408)
T 4a11_B          316 IAVYTVYSGEQITM  329 (408)
T ss_dssp             EEEEETTTCCEEEE
T ss_pred             EEEEECcCCcceee
Confidence            99999987665543

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.63  E-value=9.6e-15  Score=153.45  Aligned_cols=133  Identities=23%  Similarity=0.295  Sum_probs=104.9

Q ss_pred             CC-EEEEEECCCcEEEEcC-CCc-------eeEEEecCCCcEEEEEEcCC-C-eEEEEeCCCcEEEEc--CC---ceeEE
Q 008510            3 GV-GIISASHDCTIRLWAL-TGQ-------VLMEMVGHTAIVYSIDSHAS-G-LIVSGSEDRFAKIWK--DG---VCVQS   66 (563)
Q Consensus         3 g~-~l~s~s~DgtIrlWd~-~g~-------~i~~l~gH~~~V~~v~~~p~-g-~l~s~s~D~tvriWd--~~---~~~~~   66 (563)
                      +. +|++|+.||+|++|++ .+.       ....+.+|...|.+++|+|+ + .+++++.|++|++||  ++   +.+..
T Consensus       193 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~  272 (430)
T 2xyi_A          193 LNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHT  272 (430)
T ss_dssp             STTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEE
T ss_pred             CCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeE
Confidence            44 8999999999999999 421       25677899999999999994 5 899999999999999  33   56777


Q ss_pred             Ee-cCCcEEEEEEccCCc--EEEEeCCCcEEEEEcCCCceeceeeecccccccc---------eeEEeeccCCceEEEeC
Q 008510           67 IE-HPGCVWDAKFLENGD--IVTACSDGVTRIWTVHSDKVADSLELEAYASELS---------QYKLCRKKVGGLKLEDL  134 (563)
Q Consensus        67 l~-h~~~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~---------~~~~~~~~~~~i~~~d~  134 (563)
                      +. |...|.+++|+|++.  +++|+.||.|++||+++... ....+..+...+.         ...+++..++.|++||+
T Consensus       273 ~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~-~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~  351 (430)
T 2xyi_A          273 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL-KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL  351 (430)
T ss_dssp             EECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-CSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEG
T ss_pred             eecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC-CeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeC
Confidence            76 888999999999986  78999999999999998431 1222333333322         24566778899999999


Q ss_pred             CC
Q 008510          135 PG  136 (563)
Q Consensus       135 ~~  136 (563)
                      ..
T Consensus       352 ~~  353 (430)
T 2xyi_A          352 SK  353 (430)
T ss_dssp             GG
T ss_pred             CC
Confidence            75

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.62  E-value=1.7e-14  Score=146.39  Aligned_cols=123  Identities=15%  Similarity=0.245  Sum_probs=97.4

Q ss_pred             EEcC-CCceeEEEecCCCcEEEEEEcCC---C-eEEEEeCCCcEEEEc--C-Ccee-EEEe-cCCcEEEEEEccCCc-EE
Q 008510           17 LWAL-TGQVLMEMVGHTAIVYSIDSHAS---G-LIVSGSEDRFAKIWK--D-GVCV-QSIE-HPGCVWDAKFLENGD-IV   85 (563)
Q Consensus        17 lWd~-~g~~i~~l~gH~~~V~~v~~~p~---g-~l~s~s~D~tvriWd--~-~~~~-~~l~-h~~~V~~v~~~p~g~-i~   85 (563)
                      .|+. ..+.+..+.+|.+.|++++|+|+   | .+++|+.|++|++||  + +..+ ..+. |...|++++|+|+++ ++
T Consensus        23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  102 (368)
T 3mmy_A           23 TDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVF  102 (368)
T ss_dssp             CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred             cCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEE
Confidence            3444 56778889999999999999998   6 899999999999999  3 5555 5555 899999999999998 99


Q ss_pred             EEeCCCcEEEEEcCCCceeceeeecccccc----------cceeEEeeccCCceEEEeCCCCceeee
Q 008510           86 TACSDGVTRIWTVHSDKVADSLELEAYASE----------LSQYKLCRKKVGGLKLEDLPGLEALQI  142 (563)
Q Consensus        86 sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~~i~~~d~~~~~~l~~  142 (563)
                      +|+.||.|++||+++++....   ..+...          -....+++..++.|++||++..+.+..
T Consensus       103 s~~~dg~v~iwd~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~  166 (368)
T 3mmy_A          103 TASCDKTAKMWDLSSNQAIQI---AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMV  166 (368)
T ss_dssp             EEETTSEEEEEETTTTEEEEE---EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEE
T ss_pred             EEcCCCcEEEEEcCCCCceee---ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEE
Confidence            999999999999999875432   222222          224456777889999999987765433

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.62  E-value=7.4e-15  Score=165.66  Aligned_cols=174  Identities=22%  Similarity=0.296  Sum_probs=130.1

Q ss_pred             CCEEEEEECCCcEEEEcC-CCc--eeEEEecCCCcEEEEEEcCC--C-eEEEEeCCCcEEEEc--CC--ceeEEEe-cCC
Q 008510            3 GVGIISASHDCTIRLWAL-TGQ--VLMEMVGHTAIVYSIDSHAS--G-LIVSGSEDRFAKIWK--DG--VCVQSIE-HPG   71 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~--~i~~l~gH~~~V~~v~~~p~--g-~l~s~s~D~tvriWd--~~--~~~~~l~-h~~   71 (563)
                      |++|++|+.||+|++||+ +++  .+..+.+|...|++++|+|+  + .+++|+.||+|++||  .+  .....+. |+.
T Consensus        67 ~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~  146 (753)
T 3jro_A           67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI  146 (753)
T ss_dssp             CSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSS
T ss_pred             CCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCC
Confidence            789999999999999999 665  78889999999999999998  8 999999999999999  33  2334444 888


Q ss_pred             cEEEEEEcc-------------CCc-EEEEeCCCcEEEEEcCCCcee--ceeeeccccccc-----------ceeEEeec
Q 008510           72 CVWDAKFLE-------------NGD-IVTACSDGVTRIWTVHSDKVA--DSLELEAYASEL-----------SQYKLCRK  124 (563)
Q Consensus        72 ~V~~v~~~p-------------~g~-i~sgs~Dg~Irvwd~~~~~~~--~~~~~~~~~~~v-----------~~~~~~~~  124 (563)
                      .|.+++|+|             ++. +++|+.||.|++||++++...  ....+..+...+           ....+++.
T Consensus       147 ~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s  226 (753)
T 3jro_A          147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS  226 (753)
T ss_dssp             CEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred             ceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEe
Confidence            999999999             466 999999999999999877421  112233333222           35566778


Q ss_pred             cCCceEEEeCCCCc------e----------eeecccCCCeEEEEecCCCeEEEEEecc-cceEEEeCcE
Q 008510          125 KVGGLKLEDLPGLE------A----------LQIPGTNAGQTKVVREGDNGVAYSWDMK-EQKWDKLGEV  177 (563)
Q Consensus       125 ~~~~i~~~d~~~~~------~----------l~~~g~~dg~~~l~~~~~~~~~~~wd~~-~~~w~~~g~v  177 (563)
                      .++.|++||+....      .          .....+++|...+..+.+ +.+++|+.. .+.|...+..
T Consensus       227 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~D-g~I~vwd~~~~~~~~~~~~~  295 (753)
T 3jro_A          227 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD-NKVTLWKENLEGKWEPAGEV  295 (753)
T ss_dssp             SSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSS-SCEECCBCCSSSCCBCCCCB
T ss_pred             cCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCC-CEEEEEecCCCCCccccccc
Confidence            89999999997652      1          112245677766666555 557889876 3455554433

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.62  E-value=3.4e-14  Score=146.37  Aligned_cols=206  Identities=10%  Similarity=0.105  Sum_probs=146.2

Q ss_pred             CCCEE-EEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eE-EEEeCCCcEEEEc--CCceeEEEecCCcEEE
Q 008510            2 PGVGI-ISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LI-VSGSEDRFAKIWK--DGVCVQSIEHPGCVWD   75 (563)
Q Consensus         2 ~g~~l-~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l-~s~s~D~tvriWd--~~~~~~~l~h~~~V~~   75 (563)
                      +|+++ ++++.|++|++||+ +++++..+..|. .+.+++|+|+| .+ ++++.|++|++||  +++.+..+.+...+.+
T Consensus        42 dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~  120 (391)
T 1l0q_A           42 DGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLG  120 (391)
T ss_dssp             TSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEE
T ss_pred             CCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcce
Confidence            46655 77879999999999 899988888766 89999999998 55 5666789999999  7788888887778999


Q ss_pred             EEEccCCc-E-EEEeCCCcEEEEEcCCCceeceeeecccc----cc-cc-eeEEeeccCCceEEEeCCCCceeeec----
Q 008510           76 AKFLENGD-I-VTACSDGVTRIWTVHSDKVADSLELEAYA----SE-LS-QYKLCRKKVGGLKLEDLPGLEALQIP----  143 (563)
Q Consensus        76 v~~~p~g~-i-~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~----~~-v~-~~~~~~~~~~~i~~~d~~~~~~l~~~----  143 (563)
                      ++|+|+|+ + ++++.|+.|++||+++++...........    -. -. ...++...++.|.+||+.+.+.....    
T Consensus       121 ~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~  200 (391)
T 1l0q_A          121 LALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA  200 (391)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCC
Confidence            99999998 6 68888999999999988754332221110    01 11 23346677789999999876544322    


Q ss_pred             ------ccCCCeEEEEecC--CCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCee-eeec
Q 008510          144 ------GTNAGQTKVVREG--DNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPT-RKLP  213 (563)
Q Consensus       144 ------g~~dg~~~l~~~~--~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~-~~~~  213 (563)
                            .+++|...++...  .+..+++||...+....               .+.++  ..+..+.+ ++|+.+ +...
T Consensus       201 ~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~---------------~~~~~--~~~~~~~~s~dg~~l~~s~~  263 (391)
T 1l0q_A          201 APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITA---------------RIPVG--PDPAGIAVTPDGKKVYVALS  263 (391)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEE---------------EEECC--SSEEEEEECTTSSEEEEEET
T ss_pred             CccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEE---------------EEecC--CCccEEEEccCCCEEEEEcC
Confidence                  4456665555543  34566778766553211               12222  23677888 788766 5668


Q ss_pred             CCCCCChhHHHH
Q 008510          214 YNRSDNPYDAAD  225 (563)
Q Consensus       214 ~n~~~~~w~~a~  225 (563)
                      .|+.+.+|++..
T Consensus       264 ~d~~v~v~d~~~  275 (391)
T 1l0q_A          264 FXNTVSVIDTAT  275 (391)
T ss_dssp             TTTEEEEEETTT
T ss_pred             CCCEEEEEECCC
Confidence            888888888754

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.62  E-value=1e-14  Score=146.20  Aligned_cols=136  Identities=17%  Similarity=0.191  Sum_probs=108.3

Q ss_pred             CCCEEEEEECCCcEEEEcC-CC---------ceeEEEecCCCcEEEEEEcCC--C-eEEEEeCCCcEEEEc--CCceeEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TG---------QVLMEMVGHTAIVYSIDSHAS--G-LIVSGSEDRFAKIWK--DGVCVQS   66 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g---------~~i~~l~gH~~~V~~v~~~p~--g-~l~s~s~D~tvriWd--~~~~~~~   66 (563)
                      ++++|++|+.||+|++||+ ++         +++..+.+|...|.+++|+|+  + .+++++.|++|++||  ++++++.
T Consensus        70 d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~  149 (351)
T 3f3f_A           70 YGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRS  149 (351)
T ss_dssp             GCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTC
T ss_pred             CCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcc
Confidence            4789999999999999999 44         568889999999999999998  8 899999999999999  4443322


Q ss_pred             E--------------ecCCcEEEEEEccC---Cc-EEEEeCCCcEEEEEcCCCceeceeeeccccccc-------c----
Q 008510           67 I--------------EHPGCVWDAKFLEN---GD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL-------S----  117 (563)
Q Consensus        67 l--------------~h~~~V~~v~~~p~---g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v-------~----  117 (563)
                      +              .|...+.+++|+|+   +. +++++.|+.+.+|+...++......+..+...+       .    
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~  229 (351)
T 3f3f_A          150 WTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRW  229 (351)
T ss_dssp             CEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCS
T ss_pred             ccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCc
Confidence            2              25668999999997   66 999999999999988887654344444443332       2    


Q ss_pred             -eeEEeeccCCceEEEeCCCC
Q 008510          118 -QYKLCRKKVGGLKLEDLPGL  137 (563)
Q Consensus       118 -~~~~~~~~~~~i~~~d~~~~  137 (563)
                       ...+++..++.|++||+...
T Consensus       230 ~~~l~s~~~dg~i~iwd~~~~  250 (351)
T 3f3f_A          230 YQLIATGCKDGRIRIFKITEK  250 (351)
T ss_dssp             SEEEEEEETTSCEEEEEEEEC
T ss_pred             ceEEEEEcCCCeEEEEeCCCC
Confidence             45667788899999998754

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.61  E-value=4.8e-14  Score=147.38  Aligned_cols=206  Identities=11%  Similarity=0.060  Sum_probs=149.9

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eE-EEEeCCCcEEEEc--CCceeEEEecCCcEEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LI-VSGSEDRFAKIWK--DGVCVQSIEHPGCVWDA   76 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l-~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v   76 (563)
                      +|+.+++++.|++|++||+ +++++.++.+|...+.+++|+|++ .+ ++++.|++|++||  +++.+..+.+...+.++
T Consensus       180 ~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~  259 (433)
T 3bws_A          180 HNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGL  259 (433)
T ss_dssp             GTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEE
T ss_pred             CCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEE
Confidence            4678999999999999999 789999999999999999999998 55 5666899999999  77777777776789999


Q ss_pred             EEccCCc-EEEEe--------CCCcEEEEEcCCCceeceeeecc----ccccc-c-eeEEeeccCCceEEEeCCCCceee
Q 008510           77 KFLENGD-IVTAC--------SDGVTRIWTVHSDKVADSLELEA----YASEL-S-QYKLCRKKVGGLKLEDLPGLEALQ  141 (563)
Q Consensus        77 ~~~p~g~-i~sgs--------~Dg~Irvwd~~~~~~~~~~~~~~----~~~~v-~-~~~~~~~~~~~i~~~d~~~~~~l~  141 (563)
                      +|+|+|+ +++++        .|+.|++||+++++.........    ..-.. . ...++...++.+.+||+.+.+...
T Consensus       260 ~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~  339 (433)
T 3bws_A          260 LLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQK  339 (433)
T ss_dssp             EECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEE
Confidence            9999998 77777        58899999999887543321111    11111 1 344556788999999998765443


Q ss_pred             e----------cccCCCeEEEEecCC--------------CeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCc
Q 008510          142 I----------PGTNAGQTKVVREGD--------------NGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDY  197 (563)
Q Consensus       142 ~----------~g~~dg~~~l~~~~~--------------~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~  197 (563)
                      .          ..+++|...++...+              ++.+++||..++....               .+.++  +.
T Consensus       340 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~---------------~~~~~--~~  402 (433)
T 3bws_A          340 SIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKE---------------FWEAG--NQ  402 (433)
T ss_dssp             EEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEE---------------EEECS--SS
T ss_pred             EecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEE---------------EecCC--CC
Confidence            2          245666655554443              2367778876654321               12221  45


Q ss_pred             EEEEEc-CCCCeeeeec-CCCCCChhHHH
Q 008510          198 VFDVDI-GDGEPTRKLP-YNRSDNPYDAA  224 (563)
Q Consensus       198 v~~vd~-~dg~~~~~~~-~n~~~~~w~~a  224 (563)
                      +..+.+ ++|+.++... .|+.+.+|++.
T Consensus       403 ~~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          403 PTGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             EEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             CceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence            788888 8998887665 48888888763

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.60  E-value=7e-15  Score=151.21  Aligned_cols=100  Identities=15%  Similarity=0.168  Sum_probs=88.9

Q ss_pred             CCCEEEEEECCC----cEEEEcC-CCc----eeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-
Q 008510            2 PGVGIISASHDC----TIRLWAL-TGQ----VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-   68 (563)
Q Consensus         2 ~g~~l~s~s~Dg----tIrlWd~-~g~----~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-   68 (563)
                      +|..+++++.|+    ++++|+. .+.    ....+.+|...|++++|+|+| .+++|+.|++|+|||  ++++++++. 
T Consensus       230 dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~  309 (365)
T 4h5i_A          230 DDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQ  309 (365)
T ss_dssp             TTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETT
T ss_pred             CCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecC
Confidence            578899999988    6888998 443    245788999999999999999 999999999999999  788888874 


Q ss_pred             -cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCC
Q 008510           69 -HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSD  101 (563)
Q Consensus        69 -h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~  101 (563)
                       |...|++|+|+|||+ |++||.|++|||||+...
T Consensus       310 gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          310 AHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             SSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             cccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence             999999999999999 999999999999999654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.59  E-value=4.2e-14  Score=149.31  Aligned_cols=105  Identities=14%  Similarity=0.140  Sum_probs=92.8

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCcee----EEEecCCCcEEEEEEcCC---C-eEEEEeCCCcEEEEc--CCceeEEEe--
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVL----MEMVGHTAIVYSIDSHAS---G-LIVSGSEDRFAKIWK--DGVCVQSIE--   68 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i----~~l~gH~~~V~~v~~~p~---g-~l~s~s~D~tvriWd--~~~~~~~l~--   68 (563)
                      +|++|++|+.||.|++|++ +++..    ..+.+|...|++++|+|+   + .+++|+.|++|++||  +++++..+.  
T Consensus       160 ~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~  239 (450)
T 2vdu_B          160 DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFG  239 (450)
T ss_dssp             TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCC
T ss_pred             CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecC
Confidence            5789999999999999998 55544    378899999999999999   8 899999999999999  777787744  


Q ss_pred             cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceecee
Q 008510           69 HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSL  107 (563)
Q Consensus        69 h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~  107 (563)
                      |...|++++|+ +|+ +++|+.|+.|++||+++++.....
T Consensus       240 h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~  278 (450)
T 2vdu_B          240 HKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTF  278 (450)
T ss_dssp             CSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEE
T ss_pred             CCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeee
Confidence            88899999999 988 999999999999999998855443

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.58  E-value=8.7e-14  Score=142.33  Aligned_cols=202  Identities=10%  Similarity=0.079  Sum_probs=138.7

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDA   76 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v   76 (563)
                      ||++|++|+.|+ +++|+. +++.+.....  ..+..+++.+++  .+++++.|++|++||  +++++..+.++..|.++
T Consensus        30 dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v  106 (355)
T 3vu4_A           30 DQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDL  106 (355)
T ss_dssp             TSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEE
T ss_pred             CCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEECCCceEEE
Confidence            578899888775 799999 6665544432  247778888876  446788899999999  88899999988899999


Q ss_pred             EEccCCcEEEEeCCCcEEEEEcCCC-ceeceeee----cccccccceeEEe-eccCCceEEEeCCCCc------------
Q 008510           77 KFLENGDIVTACSDGVTRIWTVHSD-KVADSLEL----EAYASELSQYKLC-RKKVGGLKLEDLPGLE------------  138 (563)
Q Consensus        77 ~~~p~g~i~sgs~Dg~Irvwd~~~~-~~~~~~~~----~~~~~~v~~~~~~-~~~~~~i~~~d~~~~~------------  138 (563)
                      ++++++.++  +.|+.|++||+.++ +.......    ..+.  .....++ +..+|.|++||+....            
T Consensus       107 ~~~~~~~~~--~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s--~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~  182 (355)
T 3vu4_A          107 FLSREFIVV--SYGDVISVFKFGNPWKRITDDIRFGGVCEFS--NGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQK  182 (355)
T ss_dssp             EECSSEEEE--EETTEEEEEESSTTCCBSSCCEEEEEEEEEE--TTEEEEEESSCTTCEEEEECCC--------------
T ss_pred             EEcCCEEEE--EEcCEEEEEECCCCceeeEEeccCCceEEEE--ccEEEEeCCCcCcEEEEEECCCCCcccccccccccc
Confidence            998875332  35899999999987 43322111    0111  1223333 5788999999998643            


Q ss_pred             -----eeeec----------ccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeec-CcccCcEEEEE
Q 008510          139 -----ALQIP----------GTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILD-GIQYDYVFDVD  202 (563)
Q Consensus       139 -----~l~~~----------g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~-g~~~d~v~~vd  202 (563)
                           .....          .+++|.+.+..+.|+..+.+||..++...               ..+. |.+.+.|.++.
T Consensus       183 ~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~---------------~~~~~g~h~~~v~~~~  247 (355)
T 3vu4_A          183 AILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLV---------------REFRRGLDRADVVDMK  247 (355)
T ss_dssp             ----CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEE---------------EEEECTTCCSCEEEEE
T ss_pred             ccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE---------------EEEEcCCCCCcEEEEE
Confidence                 22222          44556555555555434677776554321               2233 42337799999


Q ss_pred             c-CCCCeeeeecCCCCCChhHHHH
Q 008510          203 I-GDGEPTRKLPYNRSDNPYDAAD  225 (563)
Q Consensus       203 ~-~dg~~~~~~~~n~~~~~w~~a~  225 (563)
                      | ++|..+++.+.|+++++|++..
T Consensus       248 ~s~~~~~l~s~s~d~~v~iw~~~~  271 (355)
T 3vu4_A          248 WSTDGSKLAVVSDKWTLHVFEIFN  271 (355)
T ss_dssp             ECTTSCEEEEEETTCEEEEEESSC
T ss_pred             ECCCCCEEEEEECCCEEEEEEccC
Confidence            9 9999999999999999999854

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.55  E-value=2.6e-13  Score=141.78  Aligned_cols=168  Identities=11%  Similarity=0.029  Sum_probs=123.8

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeE-----EEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCc
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLM-----EMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGC   72 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~-----~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~   72 (563)
                      +.++++++.|++|++||+ +++.+.     .+.+|...|.+++|+|++ .+++++.|++|++||  +++++..+. |...
T Consensus       134 ~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~  213 (433)
T 3bws_A          134 TRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKW  213 (433)
T ss_dssp             SEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSS
T ss_pred             CeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCC
Confidence            567788888999999999 788776     456899999999999999 899999999999999  778888887 7789


Q ss_pred             EEEEEEccCCc-E-EEEeCCCcEEEEEcCCCceeceeeeccc----ccc-cceeEEeec--------cCCceEEEeCCCC
Q 008510           73 VWDAKFLENGD-I-VTACSDGVTRIWTVHSDKVADSLELEAY----ASE-LSQYKLCRK--------KVGGLKLEDLPGL  137 (563)
Q Consensus        73 V~~v~~~p~g~-i-~sgs~Dg~Irvwd~~~~~~~~~~~~~~~----~~~-v~~~~~~~~--------~~~~i~~~d~~~~  137 (563)
                      +.+++|+|+|+ + ++++.|+.|++||+++++..........    .-. -....+.+.        .++.|.+||+.+.
T Consensus       214 ~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~  293 (433)
T 3bws_A          214 SKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE  293 (433)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT
T ss_pred             eeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC
Confidence            99999999998 5 5555899999999998875432221111    101 112333333        3678999999876


Q ss_pred             ceeee----------cccCCCeEEEEecCCCeEEEEEecccce
Q 008510          138 EALQI----------PGTNAGQTKVVREGDNGVAYSWDMKEQK  170 (563)
Q Consensus       138 ~~l~~----------~g~~dg~~~l~~~~~~~~~~~wd~~~~~  170 (563)
                      +.+..          ..+++|...++....+..+++|+..++.
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~  336 (433)
T 3bws_A          294 KLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK  336 (433)
T ss_dssp             EEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE
T ss_pred             cEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc
Confidence            54332          2456776665555555677888876654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.49  E-value=1.9e-12  Score=135.39  Aligned_cols=193  Identities=12%  Similarity=0.078  Sum_probs=130.7

Q ss_pred             CCEEEEEECC------CcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCC---cEEEEc--CCceeEEEecC
Q 008510            3 GVGIISASHD------CTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDR---FAKIWK--DGVCVQSIEHP   70 (563)
Q Consensus         3 g~~l~s~s~D------gtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~---tvriWd--~~~~~~~l~h~   70 (563)
                      +.+++.++.+      ++|++||+++...+.+.+|...|.+++|+|+| .+++++.|+   +|++||  ++++.....|+
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~  222 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP  222 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCS
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCC
Confidence            5677777765      79999999888888999999999999999999 899999885   999999  66665444488


Q ss_pred             CcEEEEEEccCCc-EE-EEeCCCc--EEEEEcCCCceeceeeeccccccc-------c-e-eEEeeccCC--ceEEEeCC
Q 008510           71 GCVWDAKFLENGD-IV-TACSDGV--TRIWTVHSDKVADSLELEAYASEL-------S-Q-YKLCRKKVG--GLKLEDLP  135 (563)
Q Consensus        71 ~~V~~v~~~p~g~-i~-sgs~Dg~--Irvwd~~~~~~~~~~~~~~~~~~v-------~-~-~~~~~~~~~--~i~~~d~~  135 (563)
                      ..+.+++|+|+|+ |+ +++.|+.  |++||+.+++..   .+..+...+       . . +.+....++  .|.+||+.
T Consensus       223 ~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~---~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~  299 (415)
T 2hqs_A          223 RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR---QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN  299 (415)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE---ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred             CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE---eCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECC
Confidence            8999999999998 66 6666655  999999887643   222222111       1 2 222232234  57777887


Q ss_pred             CCceeee----------cccCCCeEEEEecCC--CeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc
Q 008510          136 GLEALQI----------PGTNAGQTKVVREGD--NGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI  203 (563)
Q Consensus       136 ~~~~l~~----------~g~~dg~~~l~~~~~--~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~  203 (563)
                      +.+....          ..++||...++...+  ...++.|+..++....                +.++.  .+..+.+
T Consensus       300 ~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~----------------l~~~~--~~~~~~~  361 (415)
T 2hqs_A          300 GGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV----------------LSSTF--LDETPSL  361 (415)
T ss_dssp             SSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE----------------CCCSS--SCEEEEE
T ss_pred             CCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE----------------ecCCC--CcCCeEE
Confidence            6543322          245677666555543  2457777776654322                11121  4667777


Q ss_pred             -CCCCeeeeecCCC
Q 008510          204 -GDGEPTRKLPYNR  216 (563)
Q Consensus       204 -~dg~~~~~~~~n~  216 (563)
                       +||+.++....+.
T Consensus       362 spdg~~l~~~s~~~  375 (415)
T 2hqs_A          362 APNGTMVIYSSSQG  375 (415)
T ss_dssp             CTTSSEEEEEEEET
T ss_pred             cCCCCEEEEEEcCC
Confidence             7887776666555

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.47  E-value=4.7e-13  Score=140.89  Aligned_cols=98  Identities=10%  Similarity=0.092  Sum_probs=83.8

Q ss_pred             CCCEEE----EEECCCcEEEEcC-CC--------c---eeEEEecCCCcEEEEEEcCC-C-eEEEEeCCCcEEEEc--CC
Q 008510            2 PGVGII----SASHDCTIRLWAL-TG--------Q---VLMEMVGHTAIVYSIDSHAS-G-LIVSGSEDRFAKIWK--DG   61 (563)
Q Consensus         2 ~g~~l~----s~s~DgtIrlWd~-~g--------~---~i~~l~gH~~~V~~v~~~p~-g-~l~s~s~D~tvriWd--~~   61 (563)
                      +|++|+    +|+.|++|++||+ ++        +   .+..+.+|...|.+++|+|+ + .+++++.||+|++||  ++
T Consensus       103 dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~  182 (434)
T 2oit_A          103 DNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET  182 (434)
T ss_dssp             TSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS
T ss_pred             CCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC
Confidence            477888    8889999999998 43        2   24667789999999999998 5 899999999999999  55


Q ss_pred             ceeEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcC
Q 008510           62 VCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVH   99 (563)
Q Consensus        62 ~~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~   99 (563)
                      ..+.... |...|++++|+|+|+ +++|+.||+|++||.+
T Consensus       183 ~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~  222 (434)
T 2oit_A          183 VKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT  222 (434)
T ss_dssp             EEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred             cceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC
Confidence            4444333 788999999999998 9999999999999998

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.43  E-value=6.4e-12  Score=136.04  Aligned_cols=170  Identities=10%  Similarity=0.032  Sum_probs=128.5

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc----CCceeEEEecCCcEEEE
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK----DGVCVQSIEHPGCVWDA   76 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd----~~~~~~~l~h~~~V~~v   76 (563)
                      +..+++++.|++|++||. +++++.++..+.. +++++|+|+| .+++++.|++|++||    +++++.++.+...++++
T Consensus       149 ~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~v  227 (543)
T 1nir_A          149 NLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSV  227 (543)
T ss_dssp             GEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEE
T ss_pred             CEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceE
Confidence            567899999999999999 8999999984333 8999999999 899999999999999    35677788877789999


Q ss_pred             EEcc----CCc-EEEEe-CCCcEEEEEcCCCceeceeeecc--------ccc-cc---------ceeEEeeccCCceEEE
Q 008510           77 KFLE----NGD-IVTAC-SDGVTRIWTVHSDKVADSLELEA--------YAS-EL---------SQYKLCRKKVGGLKLE  132 (563)
Q Consensus        77 ~~~p----~g~-i~sgs-~Dg~Irvwd~~~~~~~~~~~~~~--------~~~-~v---------~~~~~~~~~~~~i~~~  132 (563)
                      +|+|    +|+ +++++ .+++|++||..+++.........        +.. .+         ....++...++.|.+|
T Consensus       228 a~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vv  307 (543)
T 1nir_A          228 ESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLV  307 (543)
T ss_dssp             EECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred             EeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEE
Confidence            9999    998 77776 48999999999887654433321        111 11         1234455667899999


Q ss_pred             eCCCCceee------------ecccCCCeEEEEecCCCeEEEEEecccceEEE
Q 008510          133 DLPGLEALQ------------IPGTNAGQTKVVREGDNGVAYSWDMKEQKWDK  173 (563)
Q Consensus       133 d~~~~~~l~------------~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~  173 (563)
                      |+.....+.            ...+++|.+.++.+.....+.+||..+++...
T Consensus       308 d~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~  360 (543)
T 1nir_A          308 NYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSA  360 (543)
T ss_dssp             ECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred             EecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEE
Confidence            987654332            12567888777766555667779998886543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.31  E-value=2e-10  Score=119.89  Aligned_cols=164  Identities=7%  Similarity=0.039  Sum_probs=107.5

Q ss_pred             CCCEEEEEECCC---cEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEE-EEeCCCc--EEEEc--CCceeEEEe-cC
Q 008510            2 PGVGIISASHDC---TIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIV-SGSEDRF--AKIWK--DGVCVQSIE-HP   70 (563)
Q Consensus         2 ~g~~l~s~s~Dg---tIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~-s~s~D~t--vriWd--~~~~~~~l~-h~   70 (563)
                      ||+.|++++.|+   +|++||+ +|++. .+.+|...+.+++|+|+| .++ +++.|+.  |++||  ++++ ..+. |.
T Consensus       189 dg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~  266 (415)
T 2hqs_A          189 DGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGR  266 (415)
T ss_dssp             TSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCS
T ss_pred             CCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCC
Confidence            588999999886   9999999 66664 678899999999999999 666 7777765  88999  4554 4555 77


Q ss_pred             CcEEEEEEccCCc-EEEEeC-CC--cEEEEEcCCCceeceee----eccccccc-ceeEEeecc---CCceEEEeCCCCc
Q 008510           71 GCVWDAKFLENGD-IVTACS-DG--VTRIWTVHSDKVADSLE----LEAYASEL-SQYKLCRKK---VGGLKLEDLPGLE  138 (563)
Q Consensus        71 ~~V~~v~~~p~g~-i~sgs~-Dg--~Irvwd~~~~~~~~~~~----~~~~~~~v-~~~~~~~~~---~~~i~~~d~~~~~  138 (563)
                      ..+.+++|+|+|+ |++++. ++  .|++||+.+++......    .....-.. ....+....   ...|.+||+.+.+
T Consensus       267 ~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~  346 (415)
T 2hqs_A          267 SNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG  346 (415)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC
T ss_pred             CcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC
Confidence            8999999999999 887776 44  67788988775321110    00000011 122222222   3579999998765


Q ss_pred             eeeec---------ccCCCeEEEEecCCCe--EEEEEecc
Q 008510          139 ALQIP---------GTNAGQTKVVREGDNG--VAYSWDMK  167 (563)
Q Consensus       139 ~l~~~---------g~~dg~~~l~~~~~~~--~~~~wd~~  167 (563)
                      .....         .++||...++.+.++.  .++.|+..
T Consensus       347 ~~~l~~~~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~  386 (415)
T 2hqs_A          347 VQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD  386 (415)
T ss_dssp             EEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred             EEEecCCCCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC
Confidence            43332         4455555544443332  35555543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.29  E-value=3e-10  Score=113.75  Aligned_cols=217  Identities=9%  Similarity=0.024  Sum_probs=139.8

Q ss_pred             CCCEEEEEEC-CCcEEEEcC-CCce-eEEEecCCCcEEEEEEcCCC-eEEEEeCCC---cEEEEc--CCceeEEEecCCc
Q 008510            2 PGVGIISASH-DCTIRLWAL-TGQV-LMEMVGHTAIVYSIDSHASG-LIVSGSEDR---FAKIWK--DGVCVQSIEHPGC   72 (563)
Q Consensus         2 ~g~~l~s~s~-DgtIrlWd~-~g~~-i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~---tvriWd--~~~~~~~l~h~~~   72 (563)
                      +|+++++++. ++.|++||. +++. ...+..+.....+++|+|+| .++++..++   +|++||  +++.++.+.+...
T Consensus        50 dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~  129 (331)
T 3u4y_A           50 DCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYD  129 (331)
T ss_dssp             SSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTT
T ss_pred             CCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCC
Confidence            4666665555 899999999 7777 77888787777669999999 677555553   899999  7788888877667


Q ss_pred             EEEEEEccCCc-E-EEEeCCCc-EEEEEcCCCceecee---eecc------cccccc-e-eEEeeccCCceEEEeCCCCc
Q 008510           73 VWDAKFLENGD-I-VTACSDGV-TRIWTVHSDKVADSL---ELEA------YASELS-Q-YKLCRKKVGGLKLEDLPGLE  138 (563)
Q Consensus        73 V~~v~~~p~g~-i-~sgs~Dg~-Irvwd~~~~~~~~~~---~~~~------~~~~v~-~-~~~~~~~~~~i~~~d~~~~~  138 (563)
                      ..+++|+|+|+ + +++..++. |++|+++........   .+..      ..-... . ..++...++.|.+||+.+.+
T Consensus       130 ~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~  209 (331)
T 3u4y_A          130 AVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPE  209 (331)
T ss_dssp             EEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTT
T ss_pred             ccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence            89999999998 5 45556688 999998764322111   1100      000111 2 33445567889999998766


Q ss_pred             e---eee----------cccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-C
Q 008510          139 A---LQI----------PGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-G  204 (563)
Q Consensus       139 ~---l~~----------~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~  204 (563)
                      .   +..          ..++||...++.......+++||..++....+..+.....       ..+........+.+ +
T Consensus       210 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~sp  282 (331)
T 3u4y_A          210 NITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLL-------IDPRPLFGANQMALNK  282 (331)
T ss_dssp             SCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCC-------CCCGGGTTCCCEEECT
T ss_pred             ccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccc-------cCCCCcccccceEECC
Confidence            5   321          2567888766666555667889988877654443332100       00111011134566 7


Q ss_pred             CCCeeeeec-CCCCCChhHHHH
Q 008510          205 DGEPTRKLP-YNRSDNPYDAAD  225 (563)
Q Consensus       205 dg~~~~~~~-~n~~~~~w~~a~  225 (563)
                      ||+.++... .++.+.+|++..
T Consensus       283 dg~~l~v~~~~~~~v~v~d~~~  304 (331)
T 3u4y_A          283 TETKLFISANISRELKVFTISG  304 (331)
T ss_dssp             TSSEEEEEETTTTEEEEEETTS
T ss_pred             CCCEEEEecCCCCcEEEEEecC
Confidence            888765444 455678888753

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.28  E-value=1.1e-10  Score=126.19  Aligned_cols=209  Identities=12%  Similarity=0.087  Sum_probs=139.9

Q ss_pred             CCCEEEEEECCCcEEEEcC---CCceeEEEecCCCcEEEEEEcC----CC-eEEEEe-CCCcEEEEc--CCceeEEEec-
Q 008510            2 PGVGIISASHDCTIRLWAL---TGQVLMEMVGHTAIVYSIDSHA----SG-LIVSGS-EDRFAKIWK--DGVCVQSIEH-   69 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~---~g~~i~~l~gH~~~V~~v~~~p----~g-~l~s~s-~D~tvriWd--~~~~~~~l~h-   69 (563)
                      ||+++++++.|++|++||+   +++++.++. +...+++++|+|    +| .+++++ .|++|++||  ++++++++.. 
T Consensus       189 dg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~  267 (543)
T 1nir_A          189 SGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTR  267 (543)
T ss_dssp             TSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECC
T ss_pred             CCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeeccc
Confidence            6899999999999999999   578888887 455689999999    99 777776 589999999  8888888762 


Q ss_pred             ----------CC-cEEEEEEccCCc--EEEEeCCCcEEEEEcCCCceeceeeec--cc----c-cccceeEE-eeccCCc
Q 008510           70 ----------PG-CVWDAKFLENGD--IVTACSDGVTRIWTVHSDKVADSLELE--AY----A-SELSQYKL-CRKKVGG  128 (563)
Q Consensus        70 ----------~~-~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~~~~--~~----~-~~v~~~~~-~~~~~~~  128 (563)
                                +. .+.++.++|++.  +++...++.|.+||..+.+......+.  .+    . ..-..+.+ +...++.
T Consensus       268 g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~  347 (543)
T 1nir_A          268 GMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNK  347 (543)
T ss_dssp             EECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTE
T ss_pred             CcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCe
Confidence                      33 799999999876  678888999999999886533211221  11    1 11123333 4556789


Q ss_pred             eEEEeCCCCceeeec--c---c---------CC-CeEEEEecCCCeEEEEEecccc-----eEEEeCcEeeCCCCCCCce
Q 008510          129 LKLEDLPGLEALQIP--G---T---------NA-GQTKVVREGDNGVAYSWDMKEQ-----KWDKLGEVVDGPDDGMNRP  188 (563)
Q Consensus       129 i~~~d~~~~~~l~~~--g---~---------~d-g~~~l~~~~~~~~~~~wd~~~~-----~w~~~g~v~~~~~~~~~~~  188 (563)
                      |.+||..+++.+...  +   |         ++ |.+.+....++..+.+|+....     .|..+             +
T Consensus       348 v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v-------------~  414 (543)
T 1nir_A          348 VAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKV-------------A  414 (543)
T ss_dssp             EEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEE-------------E
T ss_pred             EEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEE-------------E
Confidence            999999887665432  1   2         22 2222222223345566765441     12222             2


Q ss_pred             eecCcccCcEEEEEc-CCCCeeeeec-------CCCCCChhHHHH
Q 008510          189 ILDGIQYDYVFDVDI-GDGEPTRKLP-------YNRSDNPYDAAD  225 (563)
Q Consensus       189 ~~~g~~~d~v~~vd~-~dg~~~~~~~-------~n~~~~~w~~a~  225 (563)
                      .+.++. +.++.|.+ +||+.++...       .+.++.+|+++.
T Consensus       415 ~l~~~g-~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~  458 (543)
T 1nir_A          415 ELQGQG-GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKN  458 (543)
T ss_dssp             EEECSC-SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTC
T ss_pred             EEEcCC-CCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCC
Confidence            233333 34566777 8888887764       356788888763

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.24  E-value=1.4e-09  Score=109.64  Aligned_cols=197  Identities=13%  Similarity=0.016  Sum_probs=132.4

Q ss_pred             CCC-EEEEEECCCcEEEEcC-CCceeEEEecCCCc---------EEEEEEcCCC-eEEEEe--CCCcEEEEc--CCceeE
Q 008510            2 PGV-GIISASHDCTIRLWAL-TGQVLMEMVGHTAI---------VYSIDSHASG-LIVSGS--EDRFAKIWK--DGVCVQ   65 (563)
Q Consensus         2 ~g~-~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~---------V~~v~~~p~g-~l~s~s--~D~tvriWd--~~~~~~   65 (563)
                      +|+ .+++++.+++|.+||. +++.+..+..+...         +.+++|+|+| .++.++  .++.|.+||  +++.+.
T Consensus        99 dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~  178 (353)
T 3vgz_A           99 TTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKT  178 (353)
T ss_dssp             TTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEE
T ss_pred             CCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEE
Confidence            466 4555666899999999 88888888766533         7899999998 555544  578999999  778888


Q ss_pred             EEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccc--ccc--------cce-eEEeeccCCceEEE
Q 008510           66 SIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAY--ASE--------LSQ-YKLCRKKVGGLKLE  132 (563)
Q Consensus        66 ~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~--~~~--------v~~-~~~~~~~~~~i~~~  132 (563)
                      .+. +...+.+++|+|+|+ +++++.++.|.+||..+++..........  ...        -.. ..+....++.|.+|
T Consensus       179 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~  258 (353)
T 3vgz_A          179 AIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVV  258 (353)
T ss_dssp             EECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEE
T ss_pred             EecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEE
Confidence            887 556789999999998 88888999999999999875543333110  100        112 33344455899999


Q ss_pred             eCCCCceeeec---------ccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc
Q 008510          133 DLPGLEALQIP---------GTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI  203 (563)
Q Consensus       133 d~~~~~~l~~~---------g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~  203 (563)
                      |..+.+.+...         .+++|...++....+..++.||..++.....  +             ...  .....+.+
T Consensus       259 d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~--~-------------~~~--~~~~~~~~  321 (353)
T 3vgz_A          259 DTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKT--F-------------DTP--THPNSLAL  321 (353)
T ss_dssp             ETTTCCEEEEEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE--E-------------ECC--SEEEEEEE
T ss_pred             ECCCCcEEEEEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEE--E-------------ecC--CCCCeEEE
Confidence            99776654322         3456665555555556677888766543211  1             111  23567777


Q ss_pred             -CCCCeeeeecCC
Q 008510          204 -GDGEPTRKLPYN  215 (563)
Q Consensus       204 -~dg~~~~~~~~n  215 (563)
                       +||+.++....+
T Consensus       322 s~dg~~l~v~~~~  334 (353)
T 3vgz_A          322 SADGKTLYVSVKQ  334 (353)
T ss_dssp             CTTSCEEEEEEEC
T ss_pred             cCCCCEEEEEEcc
Confidence             778765554433

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.23  E-value=3.7e-10  Score=113.18  Aligned_cols=206  Identities=12%  Similarity=0.092  Sum_probs=124.9

Q ss_pred             CCCEEEEEECC-CcEEEEcCC---Cc--eeEEEecCCCcEEEEEEcCCC-eEEEEe-CCCcEEEEc--CCc---eeEEEe
Q 008510            2 PGVGIISASHD-CTIRLWALT---GQ--VLMEMVGHTAIVYSIDSHASG-LIVSGS-EDRFAKIWK--DGV---CVQSIE   68 (563)
Q Consensus         2 ~g~~l~s~s~D-gtIrlWd~~---g~--~i~~l~gH~~~V~~v~~~p~g-~l~s~s-~D~tvriWd--~~~---~~~~l~   68 (563)
                      +|+++++++.+ +.|++|+++   ++  .+..+..+. .+.+++|+|+| .+++++ .|+.|++|+  ++.   .++.+.
T Consensus        48 dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~  126 (343)
T 1ri6_A           48 DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE  126 (343)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC
T ss_pred             CCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc
Confidence            57888888887 999999983   33  344555544 78899999999 565555 588999999  333   334444


Q ss_pred             cCCcEEEEEEccCCc-EEEEe-CCCcEEEEEcCC-Cceecee--eecc--------ccccc-ce-eEEeeccCCceEEEe
Q 008510           69 HPGCVWDAKFLENGD-IVTAC-SDGVTRIWTVHS-DKVADSL--ELEA--------YASEL-SQ-YKLCRKKVGGLKLED  133 (563)
Q Consensus        69 h~~~V~~v~~~p~g~-i~sgs-~Dg~Irvwd~~~-~~~~~~~--~~~~--------~~~~v-~~-~~~~~~~~~~i~~~d  133 (563)
                      ....+.+++|+|+|+ +++++ .|+.|++||+.+ ++.....  ....        ..-.. .. ..++...++.+.+|+
T Consensus       127 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~  206 (343)
T 1ri6_A          127 GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWE  206 (343)
T ss_dssp             CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEE
Confidence            445799999999998 76666 899999999987 5432211  1110        00011 12 233445678999999


Q ss_pred             CCC--Cce-----e--------------eecccCCCeEEEEecCCCeEEEEEecc--cceEEEeCcEeeCCCCCCCceee
Q 008510          134 LPG--LEA-----L--------------QIPGTNAGQTKVVREGDNGVAYSWDMK--EQKWDKLGEVVDGPDDGMNRPIL  190 (563)
Q Consensus       134 ~~~--~~~-----l--------------~~~g~~dg~~~l~~~~~~~~~~~wd~~--~~~w~~~g~v~~~~~~~~~~~~~  190 (563)
                      +..  ...     .              ....+++|...++....+..+++|+..  .+.+..+..+..           
T Consensus       207 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~-----------  275 (343)
T 1ri6_A          207 LKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT-----------  275 (343)
T ss_dssp             SSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC-----------
T ss_pred             ecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC-----------
Confidence            853  211     1              122456666655555444666777765  333333222211           


Q ss_pred             cCcccCcEEEEEc-CCCCeeeeec-CCCCCChhHH
Q 008510          191 DGIQYDYVFDVDI-GDGEPTRKLP-YNRSDNPYDA  223 (563)
Q Consensus       191 ~g~~~d~v~~vd~-~dg~~~~~~~-~n~~~~~w~~  223 (563)
                        +  ..+..+.+ ++|+.++... .++.+.+|.+
T Consensus       276 --~--~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~  306 (343)
T 1ri6_A          276 --E--TQPRGFNVDHSGKYLIAAGQKSHHISVYEI  306 (343)
T ss_dssp             --S--SSCCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred             --C--CccceEEECCCCCEEEEecCCCCeEEEEEE
Confidence              1  11445666 6666555555 4556666644

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.22  E-value=4.4e-10  Score=112.32  Aligned_cols=135  Identities=7%  Similarity=-0.016  Sum_probs=96.9

Q ss_pred             CEEEEEECCCcEEEEcC-CCceeEEEecCC-C-cEEEEEEcCCC-e-EEEEeCCCcEEEEc--CCceeEEEecCC-----
Q 008510            4 VGIISASHDCTIRLWAL-TGQVLMEMVGHT-A-IVYSIDSHASG-L-IVSGSEDRFAKIWK--DGVCVQSIEHPG-----   71 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~-~-~V~~v~~~p~g-~-l~s~s~D~tvriWd--~~~~~~~l~h~~-----   71 (563)
                      +++++++.|++|++||. +++.+.++.... . .+.+++|+|+| . +++++.++.|.+||  +++.+..+....     
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            57999999999999999 788888876332 2 47889999998 4 56677789999999  778777777433     


Q ss_pred             -cEEEEEEccCCc-EEEEe------------CCCcEEEEEcCCCceeceeeeccccc----cc-ceeEEeeccCCceEEE
Q 008510           72 -CVWDAKFLENGD-IVTAC------------SDGVTRIWTVHSDKVADSLELEAYAS----EL-SQYKLCRKKVGGLKLE  132 (563)
Q Consensus        72 -~V~~v~~~p~g~-i~sgs------------~Dg~Irvwd~~~~~~~~~~~~~~~~~----~v-~~~~~~~~~~~~i~~~  132 (563)
                       .+.+++|+|+|+ +++++            .++.|++||..+++............    .. ....+..  ++.+.+|
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~  159 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVM  159 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEE
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEE
Confidence             678999999997 66665            57999999999887543322211100    01 1112222  4789999


Q ss_pred             eCCCCcee
Q 008510          133 DLPGLEAL  140 (563)
Q Consensus       133 d~~~~~~l  140 (563)
                      |+.+.+..
T Consensus       160 d~~~~~~~  167 (337)
T 1pby_B          160 DPEAGTLV  167 (337)
T ss_dssp             ETTTTEEE
T ss_pred             ECCCCcEe
Confidence            98776554

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.21  E-value=1e-09  Score=109.96  Aligned_cols=167  Identities=13%  Similarity=0.078  Sum_probs=112.6

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeC-CCcEEEEc--CCce-eEEEe-cCCcEEE
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSE-DRFAKIWK--DGVC-VQSIE-HPGCVWD   75 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~-D~tvriWd--~~~~-~~~l~-h~~~V~~   75 (563)
                      +..+++++.|++|++||. +++.+..+..+...+ +++|+|+| .++.++. ++.|++||  +++. ...+. +.....+
T Consensus        10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~   88 (331)
T 3u4y_A           10 NFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMAD   88 (331)
T ss_dssp             CEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCC
T ss_pred             CEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccc
Confidence            345889999999999999 789888888777777 99999999 5555544 89999999  6666 66666 4445555


Q ss_pred             EEEccCCc-EEEEeCCC---cEEEEEcCCCceeceeeeccccc----ccc-e-eEEeeccCCc-eEEEeCCCCcee----
Q 008510           76 AKFLENGD-IVTACSDG---VTRIWTVHSDKVADSLELEAYAS----ELS-Q-YKLCRKKVGG-LKLEDLPGLEAL----  140 (563)
Q Consensus        76 v~~~p~g~-i~sgs~Dg---~Irvwd~~~~~~~~~~~~~~~~~----~v~-~-~~~~~~~~~~-i~~~d~~~~~~l----  140 (563)
                      ++|+|+|+ ++++..++   .|++||+.+++............    ... . ..++...++. +.+|++.....+    
T Consensus        89 ~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~  168 (331)
T 3u4y_A           89 VDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG  168 (331)
T ss_dssp             EEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE
T ss_pred             eEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC
Confidence            99999999 66444442   89999999887544332211111    111 2 3334445567 998887642221    


Q ss_pred             -----------eecccCCCeEEEEecCCCeEEEEEecccce
Q 008510          141 -----------QIPGTNAGQTKVVREGDNGVAYSWDMKEQK  170 (563)
Q Consensus       141 -----------~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~  170 (563)
                                 ....++||...++....+..+++||..++.
T Consensus       169 ~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~  209 (331)
T 3u4y_A          169 QEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPE  209 (331)
T ss_dssp             EEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTT
T ss_pred             CccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence                       122566777666665555667788876554

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.20  E-value=1.4e-09  Score=109.34  Aligned_cols=101  Identities=5%  Similarity=-0.081  Sum_probs=81.5

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCC-CcEEEEEEcCCC-e-EEEEeCCCcEEEEc--CCceeEEEecCC----
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHT-AIVYSIDSHASG-L-IVSGSEDRFAKIWK--DGVCVQSIEHPG----   71 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~-~~V~~v~~~p~g-~-l~s~s~D~tvriWd--~~~~~~~l~h~~----   71 (563)
                      ++..+++++.|++|++||. +++.++++..+. ..+..++|+|+| . +++++.++.|.+||  +++.+..+....    
T Consensus        10 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~   89 (349)
T 1jmx_B           10 GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGE   89 (349)
T ss_dssp             TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTE
T ss_pred             CCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccccc
Confidence            3578999999999999999 788888887654 257789999998 4 55666789999999  677777776322    


Q ss_pred             ---cEEEEEEccCCc-EEEEeCC------------CcEEEEEcCCCc
Q 008510           72 ---CVWDAKFLENGD-IVTACSD------------GVTRIWTVHSDK  102 (563)
Q Consensus        72 ---~V~~v~~~p~g~-i~sgs~D------------g~Irvwd~~~~~  102 (563)
                         .+.+++|+|+|+ +++++.+            +.|++||+.+++
T Consensus        90 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  136 (349)
T 1jmx_B           90 VGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL  136 (349)
T ss_dssp             EEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred             ccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcc
Confidence               388999999998 7777755            899999998754

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.19  E-value=4.9e-10  Score=117.76  Aligned_cols=100  Identities=15%  Similarity=0.099  Sum_probs=82.8

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe-cC-------C
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE-HP-------G   71 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~-h~-------~   71 (563)
                      +.+|++|+.||+|++||+ ++..+....+|...|++++|+|+| .+++|+.|++|++|| .++....+. |.       .
T Consensus       162 ~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  241 (434)
T 2oit_A          162 PSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPV  241 (434)
T ss_dssp             TTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCE
T ss_pred             CCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCce
Confidence            678999999999999999 777777778899999999999999 999999999999999 766666664 32       2


Q ss_pred             cEEEEEEccCCcE--EEEeCCCc------EEEEEcCCCc
Q 008510           72 CVWDAKFLENGDI--VTACSDGV------TRIWTVHSDK  102 (563)
Q Consensus        72 ~V~~v~~~p~g~i--~sgs~Dg~------Irvwd~~~~~  102 (563)
                      .|.+++|++++.+  +.++.||.      +++|+++..+
T Consensus       242 ~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~  280 (434)
T 2oit_A          242 RVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKE  280 (434)
T ss_dssp             EEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTT
T ss_pred             eEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCC
Confidence            7999999998883  33445543      8999998653

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.18  E-value=5e-10  Score=109.21  Aligned_cols=197  Identities=15%  Similarity=0.101  Sum_probs=121.4

Q ss_pred             CCCEEEEEECCCcEEEEcC-C-CceeEEEecCC-CcEEEEEEcCCC-eEEEEe--CCCcEEEEc---CCceeEEEecCCc
Q 008510            2 PGVGIISASHDCTIRLWAL-T-GQVLMEMVGHT-AIVYSIDSHASG-LIVSGS--EDRFAKIWK---DGVCVQSIEHPGC   72 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~-g~~i~~l~gH~-~~V~~v~~~p~g-~l~s~s--~D~tvriWd---~~~~~~~l~h~~~   72 (563)
                      +|+++++++ ++.|++||+ + ++......+|. ..+.+++|+|+| .+++++  .|+..+||.   .+.....+.+...
T Consensus        52 dg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  130 (297)
T 2ojh_A           52 DGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLP  130 (297)
T ss_dssp             TSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSSS
T ss_pred             CCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCCC
Confidence            578888887 889999999 6 77776666764 788999999999 888888  445667776   4444566665556


Q ss_pred             EEEEEEccCCc-EE-EEeCCCcEEEEEcC--CCceeceeeecccccc-------cc-e-eEEeeccCCceEEEeCC--CC
Q 008510           73 VWDAKFLENGD-IV-TACSDGVTRIWTVH--SDKVADSLELEAYASE-------LS-Q-YKLCRKKVGGLKLEDLP--GL  137 (563)
Q Consensus        73 V~~v~~~p~g~-i~-sgs~Dg~Irvwd~~--~~~~~~~~~~~~~~~~-------v~-~-~~~~~~~~~~i~~~d~~--~~  137 (563)
                      +.+++|+|+|+ ++ +++.|+.+++|+++  ++...   .+..+...       .. . +.+....++.+.+|++.  +.
T Consensus       131 ~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~  207 (297)
T 2ojh_A          131 SYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVET---RLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGS  207 (297)
T ss_dssp             EEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEE---ECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS
T ss_pred             ccceEECCCCCEEEEEECCCCceEEEEEECCCCcce---EcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCC
Confidence            99999999998 65 78889999999964  33321   11111111       11 2 23334456788888764  22


Q ss_pred             ceeee----------cccCCCeEEEEecCCC----------eEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCc
Q 008510          138 EALQI----------PGTNAGQTKVVREGDN----------GVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDY  197 (563)
Q Consensus       138 ~~l~~----------~g~~dg~~~l~~~~~~----------~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~  197 (563)
                      .....          ..+++|...++...++          ..++.|+...+....+....             ++. ..
T Consensus       208 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~-------------~~~-~~  273 (297)
T 2ojh_A          208 SVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLF-------------GGQ-GT  273 (297)
T ss_dssp             CEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEE-------------EST-TT
T ss_pred             CcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccC-------------CCC-cc
Confidence            22111          2455666555444321          33666666554332222111             222 34


Q ss_pred             EEEEEc-CCCCeeeeecCCC
Q 008510          198 VFDVDI-GDGEPTRKLPYNR  216 (563)
Q Consensus       198 v~~vd~-~dg~~~~~~~~n~  216 (563)
                      +..+.+ ++|+.++....+.
T Consensus       274 ~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          274 MNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             SCSCCBCTTSSEEEEEEECC
T ss_pred             cccceECCCCCEEEEEEecc
Confidence            556667 7787777666554

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.16  E-value=4e-10  Score=126.24  Aligned_cols=101  Identities=11%  Similarity=0.100  Sum_probs=81.4

Q ss_pred             CCCEEEEEEC-CC-----cEEEEcC-CCceeEEEecCCC------------------------cEEEEEEcCCC-eEEEE
Q 008510            2 PGVGIISASH-DC-----TIRLWAL-TGQVLMEMVGHTA------------------------IVYSIDSHASG-LIVSG   49 (563)
Q Consensus         2 ~g~~l~s~s~-Dg-----tIrlWd~-~g~~i~~l~gH~~------------------------~V~~v~~~p~g-~l~s~   49 (563)
                      ||++|++++. |+     +|++||+ +|+....+..|..                        .|.+++|+||| .++++
T Consensus        47 dG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~  126 (741)
T 2ecf_A           47 DGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFP  126 (741)
T ss_dssp             TSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEEE
T ss_pred             CCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEE
Confidence            6899999998 88     9999999 7777777765543                        37899999999 78887


Q ss_pred             eCCCcEEEEc-CCc---eeEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCcee
Q 008510           50 SEDRFAKIWK-DGV---CVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVA  104 (563)
Q Consensus        50 s~D~tvriWd-~~~---~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~  104 (563)
                      +. ++|++|| .+.   ....+. |...+.+++|+|||+ |+.++ ++.|++||+.+++..
T Consensus       127 ~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~  185 (741)
T 2ecf_A          127 LG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQM  185 (741)
T ss_dssp             ET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEE
T ss_pred             eC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEE
Confidence            76 9999999 433   444454 777999999999999 77665 679999999987643

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.15  E-value=1.2e-09  Score=110.47  Aligned_cols=206  Identities=12%  Similarity=0.133  Sum_probs=122.1

Q ss_pred             CCCEEEEEEC---CCcEEEEcC-CCc--eeEEEecCCCcEEEEEEcCCC-eEEEEe-CCCcEEEEc-C--Cce--eEEEe
Q 008510            2 PGVGIISASH---DCTIRLWAL-TGQ--VLMEMVGHTAIVYSIDSHASG-LIVSGS-EDRFAKIWK-D--GVC--VQSIE   68 (563)
Q Consensus         2 ~g~~l~s~s~---DgtIrlWd~-~g~--~i~~l~gH~~~V~~v~~~p~g-~l~s~s-~D~tvriWd-~--~~~--~~~l~   68 (563)
                      +|+ +++++.   ++.|++|++ +|+  .+..+..|...+..++|+|+| .+++++ .+++|++|+ .  +..  +..+.
T Consensus        50 dg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~  128 (347)
T 3hfq_A           50 KDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQ  128 (347)
T ss_dssp             TCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEE
T ss_pred             CCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceee
Confidence            456 555544   689999999 554  455666688888999999999 677776 789999999 2  332  33333


Q ss_pred             cC----------CcEEEEEEccCCc-EEEEeCCCcEEEEEcC-CCceeceeeeccc--------cccc-ce-eEEeeccC
Q 008510           69 HP----------GCVWDAKFLENGD-IVTACSDGVTRIWTVH-SDKVADSLELEAY--------ASEL-SQ-YKLCRKKV  126 (563)
Q Consensus        69 h~----------~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~-~~~~~~~~~~~~~--------~~~v-~~-~~~~~~~~  126 (563)
                      +.          ..+.+++|+|+|+ ++++..++.|++|++. +++......+...        .-.. .. ..++...+
T Consensus       129 ~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~  208 (347)
T 3hfq_A          129 HSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELS  208 (347)
T ss_dssp             CCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT
T ss_pred             cCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCC
Confidence            32          1488999999999 5666678899999998 4542221111110        0011 12 33345566


Q ss_pred             CceEEEeCCC--Cce--e-----------------eecccCCCeEEEEecCCCeEEEEEecc-cceEEEeCcEeeCCCCC
Q 008510          127 GGLKLEDLPG--LEA--L-----------------QIPGTNAGQTKVVREGDNGVAYSWDMK-EQKWDKLGEVVDGPDDG  184 (563)
Q Consensus       127 ~~i~~~d~~~--~~~--l-----------------~~~g~~dg~~~l~~~~~~~~~~~wd~~-~~~w~~~g~v~~~~~~~  184 (563)
                      +.+.+|++..  ...  +                 ....++||.+.++.......+.+|+.. .+.+..+..+..     
T Consensus       209 ~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-----  283 (347)
T 3hfq_A          209 SQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIST-----  283 (347)
T ss_dssp             TEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEEC-----
T ss_pred             CEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEec-----
Confidence            7888998763  221  1                 122566776654544434556667754 223332222211     


Q ss_pred             CCceeecCcccCcEEEEEc-CCCCeeeeecCC-CCCChhH
Q 008510          185 MNRPILDGIQYDYVFDVDI-GDGEPTRKLPYN-RSDNPYD  222 (563)
Q Consensus       185 ~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n-~~~~~w~  222 (563)
                              +. ..+..+.+ +||+.++....+ ..+.+|.
T Consensus       284 --------~~-~~~~~~~~spdg~~l~v~~~~~~~v~v~~  314 (347)
T 3hfq_A          284 --------EG-DFPRDFDLDPTEAFVVVVNQNTDNATLYA  314 (347)
T ss_dssp             --------SS-SCCCEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             --------CC-CCcCeEEECCCCCEEEEEEcCCCcEEEEE
Confidence                    11 23456666 777766655543 5566664

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.14  E-value=1.7e-09  Score=108.23  Aligned_cols=211  Identities=11%  Similarity=0.105  Sum_probs=125.5

Q ss_pred             EEEEEECCCcEEEEcCC--Cc--eeEEEecCCCcEEEEEEcCCC-eEEEEeCC-CcEEEEc-C--C-c--eeEEEecCCc
Q 008510            5 GIISASHDCTIRLWALT--GQ--VLMEMVGHTAIVYSIDSHASG-LIVSGSED-RFAKIWK-D--G-V--CVQSIEHPGC   72 (563)
Q Consensus         5 ~l~s~s~DgtIrlWd~~--g~--~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D-~tvriWd-~--~-~--~~~~l~h~~~   72 (563)
                      .+++++.|++|++|+++  ++  .+.. ..|...+.+++|+|+| .+++++.+ +.|++|+ +  . +  .+..+.....
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~   85 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS   85 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCC
Confidence            45555889999999983  53  3333 3577889999999999 77777776 9999999 4  2 3  2334444458


Q ss_pred             EEEEEEccCCc-EEEEe-CCCcEEEEEcCCCceec-eeeecccc--c----cc-ceeEEee-ccCCceEEEeCCC-Ccee
Q 008510           73 VWDAKFLENGD-IVTAC-SDGVTRIWTVHSDKVAD-SLELEAYA--S----EL-SQYKLCR-KKVGGLKLEDLPG-LEAL  140 (563)
Q Consensus        73 V~~v~~~p~g~-i~sgs-~Dg~Irvwd~~~~~~~~-~~~~~~~~--~----~v-~~~~~~~-~~~~~i~~~d~~~-~~~l  140 (563)
                      +.+++|+|+|+ +++++ .++.|++||+..++... ...+....  .    .. ....+.. ..++.+.+||+.. ....
T Consensus        86 ~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~  165 (343)
T 1ri6_A           86 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV  165 (343)
T ss_dssp             CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred             CcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCcee
Confidence            89999999998 65555 48899999995332111 11111111  0    11 1233333 3778999999876 3221


Q ss_pred             -------e---------ecccCCCeEEEEecCCCeEEEEEecc--cceEEEeCcEeeCCCCCCCceeecCcccCcEEEEE
Q 008510          141 -------Q---------IPGTNAGQTKVVREGDNGVAYSWDMK--EQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVD  202 (563)
Q Consensus       141 -------~---------~~g~~dg~~~l~~~~~~~~~~~wd~~--~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd  202 (563)
                             .         ...+++|...++.......+.+|+..  .+.+.....+......      +.+  ...+..+.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~------~~~--~~~~~~i~  237 (343)
T 1ri6_A          166 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPEN------FSD--TRWAADIH  237 (343)
T ss_dssp             EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTT------CCS--CCCEEEEE
T ss_pred             eecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcc------ccc--cCCccceE
Confidence                   0         11455666555555444556677763  2333222111111000      111  13456777


Q ss_pred             c-CCCCeee-eecCCCCCChhHHH
Q 008510          203 I-GDGEPTR-KLPYNRSDNPYDAA  224 (563)
Q Consensus       203 ~-~dg~~~~-~~~~n~~~~~w~~a  224 (563)
                      + ++|+.++ ....+..+.+|++.
T Consensus       238 ~s~dg~~l~v~~~~~~~i~v~d~~  261 (343)
T 1ri6_A          238 ITPDGRHLYACDRTASLITVFSVS  261 (343)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             ECCCCCEEEEEecCCCEEEEEEEc
Confidence            8 7887666 44467777888764

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.11  E-value=1.9e-09  Score=104.97  Aligned_cols=199  Identities=9%  Similarity=0.053  Sum_probs=113.8

Q ss_pred             EECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--C-CceeEEEe-c-CCcEEEEEEccCC
Q 008510            9 ASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--D-GVCVQSIE-H-PGCVWDAKFLENG   82 (563)
Q Consensus         9 ~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~-~~~~~~l~-h-~~~V~~v~~~p~g   82 (563)
                      ++.|++|++||+.+.....+..|...|.+++|+|+| .+++++ ++.|++||  + ++...... + ...+.+++|+|+|
T Consensus        18 ~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg   96 (297)
T 2ojh_A           18 GSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDG   96 (297)
T ss_dssp             CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTS
T ss_pred             CCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCC
Confidence            467899999999433344667799999999999999 777776 88999999  5 56655554 4 3689999999999


Q ss_pred             c-EEEEe--CCCcEEEEEc--CCCceeceee---ec--ccccccceeEEeeccCCceEEEeC--CCCceeeecccCCCeE
Q 008510           83 D-IVTAC--SDGVTRIWTV--HSDKVADSLE---LE--AYASELSQYKLCRKKVGGLKLEDL--PGLEALQIPGTNAGQT  150 (563)
Q Consensus        83 ~-i~sgs--~Dg~Irvwd~--~~~~~~~~~~---~~--~~~~~v~~~~~~~~~~~~i~~~d~--~~~~~l~~~g~~dg~~  150 (563)
                      + +++++  .++.+++|.+  .+++......   ..  .+...-..+.+....++.+++|++  .+........+.....
T Consensus        97 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  176 (297)
T 2ojh_A           97 ALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRND  176 (297)
T ss_dssp             SEEEEEECTTTSSCEEEEEETTCCCCEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEE
T ss_pred             CEEEEEEeCCCCcceEEEEECCCCceEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccc
Confidence            9 88887  3345555554  4443211100   00  111111123335666788888885  3333332223323333


Q ss_pred             EEEecCCCeEEEEE---ecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCC
Q 008510          151 KVVREGDNGVAYSW---DMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNR  216 (563)
Q Consensus       151 ~l~~~~~~~~~~~w---d~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~  216 (563)
                      .+..++++..++.-   +.....|..-.       .+.....+.++. ..+..+.+ ++|+.++....+.
T Consensus       177 ~~~~s~dg~~l~~~~~~~~~~~i~~~~~-------~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~  238 (297)
T 2ojh_A          177 GPDYSPDGRWIYFNSSRTGQMQIWRVRV-------DGSSVERITDSA-YGDWFPHPSPSGDKVVFVSYDA  238 (297)
T ss_dssp             EEEECTTSSEEEEEECTTSSCEEEEEET-------TSSCEEECCCCS-EEEEEEEECTTSSEEEEEEEET
T ss_pred             cceECCCCCEEEEEecCCCCccEEEECC-------CCCCcEEEecCC-cccCCeEECCCCCEEEEEEcCC
Confidence            33333333321111   11122222110       001122233333 45778888 8998888777663

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.02  E-value=2.1e-08  Score=100.89  Aligned_cols=158  Identities=5%  Similarity=0.017  Sum_probs=109.3

Q ss_pred             CCCEEEEEE--CCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEec-----C
Q 008510            2 PGVGIISAS--HDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEH-----P   70 (563)
Q Consensus         2 ~g~~l~s~s--~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h-----~   70 (563)
                      +|++++.++  .++.|.+||. +++.+..+..+...+.+++|+|+| .++.++.|+.+.+||  +++.+..+..     .
T Consensus       151 dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~  230 (353)
T 3vgz_A          151 ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKE  230 (353)
T ss_dssp             TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSC
T ss_pred             CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCC
Confidence            466666665  4889999999 788888887677778999999999 888889999999999  7777777662     3


Q ss_pred             CcEEEEEEccCCc-EEEEe-CCCcEEEEEcCCCceeceeeecccc-----cccceeEEeeccCCceEEEeCCCCceeeec
Q 008510           71 GCVWDAKFLENGD-IVTAC-SDGVTRIWTVHSDKVADSLELEAYA-----SELSQYKLCRKKVGGLKLEDLPGLEALQIP  143 (563)
Q Consensus        71 ~~V~~v~~~p~g~-i~sgs-~Dg~Irvwd~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~  143 (563)
                      ..+.+++|+|+|+ +++++ .++.|.+||..+++.........-.     ..-....++...++.|.+||..+.+.+...
T Consensus       231 ~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~  310 (353)
T 3vgz_A          231 HFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTF  310 (353)
T ss_dssp             CCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             cccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEE
Confidence            4688999999998 65554 4599999999988755433322110     001123344456788888888776655443


Q ss_pred             ccCCCeEEEEecCCCe
Q 008510          144 GTNAGQTKVVREGDNG  159 (563)
Q Consensus       144 g~~dg~~~l~~~~~~~  159 (563)
                      ........+..++++.
T Consensus       311 ~~~~~~~~~~~s~dg~  326 (353)
T 3vgz_A          311 DTPTHPNSLALSADGK  326 (353)
T ss_dssp             ECCSEEEEEEECTTSC
T ss_pred             ecCCCCCeEEEcCCCC
Confidence            2222333444444443

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.00  E-value=6.8e-09  Score=121.17  Aligned_cols=178  Identities=13%  Similarity=0.037  Sum_probs=123.7

Q ss_pred             CCCEEEEEECCCcEEEEcCCCceeEEEecCCC-cEEEEEEcCCC-eEEEEeCCCcEE-EEc-CCceeEEEe-cCCcEEEE
Q 008510            2 PGVGIISASHDCTIRLWALTGQVLMEMVGHTA-IVYSIDSHASG-LIVSGSEDRFAK-IWK-DGVCVQSIE-HPGCVWDA   76 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~-~V~~v~~~p~g-~l~s~s~D~tvr-iWd-~~~~~~~l~-h~~~V~~v   76 (563)
                      ||+++++++ ++.|++|+..+.....+.+|.. .+.+++|+ +| .++.++.+..+. +|+ .+.....+. |...+.++
T Consensus       307 dG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~  384 (1045)
T 1k32_A          307 DGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAM  384 (1045)
T ss_dssp             GGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEE
T ss_pred             CCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeee
Confidence            467788887 8899999994444455778888 89999999 98 888888888888 888 444444444 66799999


Q ss_pred             EEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceeeecccCCCeEEEEec
Q 008510           77 KFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVRE  155 (563)
Q Consensus        77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg~~~l~~~  155 (563)
                      +|+|+|+ +++++.|+.|++||+.+++....                         ..-..........++||...++..
T Consensus       385 ~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~-------------------------~~~~~~~v~~~~~SpDG~~la~~~  439 (1045)
T 1k32_A          385 GVDRNGKFAVVANDRFEIMTVDLETGKPTVI-------------------------ERSREAMITDFTISDNSRFIAYGF  439 (1045)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTCCEEEE-------------------------EECSSSCCCCEEECTTSCEEEEEE
T ss_pred             EECCCCCEEEEECCCCeEEEEECCCCceEEe-------------------------ccCCCCCccceEECCCCCeEEEEe
Confidence            9999999 89999999999999998863211                         101111122334677887776655


Q ss_pred             CCC---------eEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHH
Q 008510          156 GDN---------GVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDA  223 (563)
Q Consensus       156 ~~~---------~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~  223 (563)
                      .++         ..+++||...+....                +.++. +.+..+.| +||+.++....+.....|..
T Consensus       440 ~~~~~~~~~~~~~~i~l~d~~~g~~~~----------------l~~~~-~~~~~~~~spdG~~l~~~s~~~~~~~~~~  500 (1045)
T 1k32_A          440 PLKHGETDGYVMQAIHVYDMEGRKIFA----------------ATTEN-SHDYAPAFDADSKNLYYLSYRSLDPSPDR  500 (1045)
T ss_dssp             EECSSTTCSCCEEEEEEEETTTTEEEE----------------CSCSS-SBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred             cCccccccCCCCCeEEEEECCCCcEEE----------------eeCCC-cccCCceEcCCCCEEEEEecccCCcCcch
Confidence            432         468899987654221                11222 34667777 88887777776666655543

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.00  E-value=4.8e-09  Score=117.06  Aligned_cols=88  Identities=9%  Similarity=-0.041  Sum_probs=66.2

Q ss_pred             CCCEEEEEECC---------CcEEEEcC-CCceeEEEe---cCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeE
Q 008510            2 PGVGIISASHD---------CTIRLWAL-TGQVLMEMV---GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQ   65 (563)
Q Consensus         2 ~g~~l~s~s~D---------gtIrlWd~-~g~~i~~l~---gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~   65 (563)
                      ||+++++++.|         ++|++||+ ++++ ..+.   +|...+.+++|+||| .++.++. +.|++|+  +++..+
T Consensus        71 Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~  148 (723)
T 1xfd_A           71 DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIR  148 (723)
T ss_dssp             TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEE
T ss_pred             CCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEE
Confidence            68899999885         77889999 5655 3443   455568999999999 8888875 7999999  556555


Q ss_pred             EEe-cCCcE------------------EEEEEccCCc-EEEEeCCC
Q 008510           66 SIE-HPGCV------------------WDAKFLENGD-IVTACSDG   91 (563)
Q Consensus        66 ~l~-h~~~V------------------~~v~~~p~g~-i~sgs~Dg   91 (563)
                      ... +...+                  .+++|+|||+ |++++.|+
T Consensus       149 ~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~  194 (723)
T 1xfd_A          149 VVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIND  194 (723)
T ss_dssp             EECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEEC
T ss_pred             EecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECC
Confidence            444 33333                  7899999999 88877553

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.00  E-value=8.3e-09  Score=115.52  Aligned_cols=88  Identities=10%  Similarity=0.040  Sum_probs=68.3

Q ss_pred             CCCEEEEEECCCcEEEEcCCCc---eeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCc--
Q 008510            2 PGVGIISASHDCTIRLWALTGQ---VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGC--   72 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~~g~---~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~--   72 (563)
                      ||++|++++. ++|++||+.+.   .+..+..|...+.+++|+||| .++.++ ++.|++||  +++..+... +...  
T Consensus       119 Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~  196 (741)
T 2ecf_A          119 DAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIG  196 (741)
T ss_dssp             TSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEE
T ss_pred             CCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCcccee
Confidence            6788999986 99999999433   566788899999999999999 787777 56999999  444433332 2222  


Q ss_pred             --------------EEEEEEccCCc-EEEEeCCC
Q 008510           73 --------------VWDAKFLENGD-IVTACSDG   91 (563)
Q Consensus        73 --------------V~~v~~~p~g~-i~sgs~Dg   91 (563)
                                    +.+++|+|||+ |++++.|+
T Consensus       197 ~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~  230 (741)
T 2ecf_A          197 NGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDE  230 (741)
T ss_dssp             ESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEEC
T ss_pred             ccccceeeeeccccccceEECCCCCEEEEEEEcC
Confidence                          47899999999 88887776

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.96  E-value=3.1e-09  Score=118.63  Aligned_cols=99  Identities=13%  Similarity=0.113  Sum_probs=79.0

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCC---cEEEEEEcCCC-eEEEEeCC---------CcEEEEc--CCceeE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTA---IVYSIDSHASG-LIVSGSED---------RFAKIWK--DGVCVQ   65 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~---~V~~v~~~p~g-~l~s~s~D---------~tvriWd--~~~~~~   65 (563)
                      ||+++++ +.||+|++||+ +|++...+.+|..   .|.+++|+||| .+++++.|         +.+++||  ++++ +
T Consensus        27 dg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~  104 (723)
T 1xfd_A           27 DTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-Q  104 (723)
T ss_dssp             SSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-E
T ss_pred             CCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-E
Confidence            4665655 78999999999 7888888887775   49999999999 88888875         6788999  5554 4


Q ss_pred             EEe----cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCce
Q 008510           66 SIE----HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKV  103 (563)
Q Consensus        66 ~l~----h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~  103 (563)
                      .+.    |...+.+++|+|||+ |+.++. +.|++||..+++.
T Consensus       105 ~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~  146 (723)
T 1xfd_A          105 SLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA  146 (723)
T ss_dssp             ECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC
T ss_pred             eccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce
Confidence            454    333589999999998 777765 8999999988764

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.96  E-value=1.2e-08  Score=119.23  Aligned_cols=101  Identities=11%  Similarity=0.067  Sum_probs=85.7

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCC----------cEEEEc-CCceeEEEe
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDR----------FAKIWK-DGVCVQSIE   68 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~----------tvriWd-~~~~~~~l~   68 (563)
                      ||+++++++.|++|++||+ +|++...+.+|...+.+++|+||| .+++++.++          +|++|| .+..+..+.
T Consensus       389 DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~  468 (1045)
T 1k32_A          389 NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT  468 (1045)
T ss_dssp             TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS
T ss_pred             CCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEee
Confidence            6889999999999999999 788877777999999999999999 787777654          899999 443355665


Q ss_pred             -cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCc
Q 008510           69 -HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDK  102 (563)
Q Consensus        69 -h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~  102 (563)
                       |...+.+++|+|+|+ |+.++.++..++|+.....
T Consensus       469 ~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~  504 (1045)
T 1k32_A          469 TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLN  504 (1045)
T ss_dssp             CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSC
T ss_pred             CCCcccCCceEcCCCCEEEEEecccCCcCcchhccc
Confidence             777899999999999 8999999999999876443

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.92  E-value=2e-08  Score=111.78  Aligned_cols=99  Identities=7%  Similarity=0.026  Sum_probs=76.1

Q ss_pred             CCCEEEEEECCCcEEEEcC-C-----CceeEEEecCCCc--------------EEEEEEcCCC-eEEEEe----------
Q 008510            2 PGVGIISASHDCTIRLWAL-T-----GQVLMEMVGHTAI--------------VYSIDSHASG-LIVSGS----------   50 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~-----g~~i~~l~gH~~~--------------V~~v~~~p~g-~l~s~s----------   50 (563)
                      ||++|+++ .|++|++|++ +     ++.......+...              +.+++|+||| .+++++          
T Consensus       131 dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~  209 (706)
T 2z3z_A          131 VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTP  209 (706)
T ss_dssp             TSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEE
T ss_pred             CCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEE
Confidence            57888885 6899999999 6     7766544444443              4789999999 888887          


Q ss_pred             -----------------------CCCcEEEEc--CCceeEEEe---cCCcEEEEEEccCCc-EEEEeCCC-----cEEEE
Q 008510           51 -----------------------EDRFAKIWK--DGVCVQSIE---HPGCVWDAKFLENGD-IVTACSDG-----VTRIW   96 (563)
Q Consensus        51 -----------------------~D~tvriWd--~~~~~~~l~---h~~~V~~v~~~p~g~-i~sgs~Dg-----~Irvw   96 (563)
                                             .+..|++||  +++......   |...+.+++|+|||+ |++++.|+     .|++|
T Consensus       210 ~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~  289 (706)
T 2z3z_A          210 IVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAY  289 (706)
T ss_dssp             EEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEE
T ss_pred             eeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEE
Confidence                                   446799999  444433331   456899999999999 88877776     89999


Q ss_pred             EcCCC
Q 008510           97 TVHSD  101 (563)
Q Consensus        97 d~~~~  101 (563)
                      |..++
T Consensus       290 d~~~g  294 (706)
T 2z3z_A          290 DAETG  294 (706)
T ss_dssp             ETTTC
T ss_pred             ECCCC
Confidence            99988

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.89  E-value=1.3e-08  Score=113.27  Aligned_cols=94  Identities=11%  Similarity=0.012  Sum_probs=69.9

Q ss_pred             CCEEEEEECCCcEEEEcC-CCcee-EEEecCC-----------------CcEEEEEEcCCCeEEEEeCCCcEEEEc--CC
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVL-MEMVGHT-----------------AIVYSIDSHASGLIVSGSEDRFAKIWK--DG   61 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i-~~l~gH~-----------------~~V~~v~~~p~g~l~s~s~D~tvriWd--~~   61 (563)
                      |+.+++++.|+ | +||+ +|+.+ ..+..|.                 ..|.+++|+|++.++.+ .|+++++||  ++
T Consensus        35 g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~~~~~~-~~~~i~~~d~~~~  111 (706)
T 2z3z_A           35 GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRGLVVLF-TQGGLVGFDMLAR  111 (706)
T ss_dssp             TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTTTEEEEE-ETTEEEEEETTTT
T ss_pred             CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCCCeEEEE-ECCEEEEEECCCC
Confidence            56788888888 8 9999 77763 5555544                 46999999999744433 469999999  55


Q ss_pred             ceeEEEecCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCC
Q 008510           62 VCVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHS  100 (563)
Q Consensus        62 ~~~~~l~h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~  100 (563)
                      +..+...+...+.+++|+|||+ |++ +.|+.|++||+.+
T Consensus       112 ~~~~l~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~  150 (706)
T 2z3z_A          112 KVTYLFDTNEETASLDFSPVGDRVAY-VRNHNLYIARGGK  150 (706)
T ss_dssp             EEEEEECCTTCCTTCEECTTSSEEEE-EETTEEEEEECBC
T ss_pred             ceEEccCCcccccCCcCCCCCCEEEE-EECCeEEEEecCc
Confidence            5544444777899999999998 666 5789999999988

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=98.88  E-value=8.6e-09  Score=115.07  Aligned_cols=100  Identities=16%  Similarity=0.129  Sum_probs=76.3

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCC---cEEEEEEcCCC-eEEEEeC---------CCcEEEEc--CCceeE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTA---IVYSIDSHASG-LIVSGSE---------DRFAKIWK--DGVCVQ   65 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~---~V~~v~~~p~g-~l~s~s~---------D~tvriWd--~~~~~~   65 (563)
                      +| .++..+.|++|++||+ +|++...+.+|..   .+.+++|+||| .+++++.         |++|++||  +++.+.
T Consensus        26 dg-~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~  104 (719)
T 1z68_A           26 GQ-EYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVR  104 (719)
T ss_dssp             SS-EEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC
T ss_pred             CC-eEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccc
Confidence            35 4555667999999999 7777777766654   38999999999 7887776         78999999  454421


Q ss_pred             EEecCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCce
Q 008510           66 SIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKV  103 (563)
Q Consensus        66 ~l~h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~  103 (563)
                      ....+..+.+++|+|||+ |+.+. |+.|++||+.+++.
T Consensus       105 ~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~  142 (719)
T 1z68_A          105 GNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPP  142 (719)
T ss_dssp             SSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCC
T ss_pred             ceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCc
Confidence            112345789999999999 77764 88999999987763

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=98.86  E-value=2.6e-07  Score=93.04  Aligned_cols=99  Identities=12%  Similarity=0.105  Sum_probs=71.6

Q ss_pred             CCCEEEEEE-CCCcEEEEcC--CCc--eeEEEec---------CCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-C--Cce
Q 008510            2 PGVGIISAS-HDCTIRLWAL--TGQ--VLMEMVG---------HTAIVYSIDSHASG-LIVSGSEDRFAKIWK-D--GVC   63 (563)
Q Consensus         2 ~g~~l~s~s-~DgtIrlWd~--~g~--~i~~l~g---------H~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~--~~~   63 (563)
                      +|+++++++ .+++|++|++  +|.  .+..+..         +...+.+++|+|+| .++++..++.|++|+ .  ++.
T Consensus        96 dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~  175 (347)
T 3hfq_A           96 ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQL  175 (347)
T ss_dssp             TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCE
T ss_pred             CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcE
Confidence            578888888 7899999998  343  2333322         12358999999999 777777889999999 3  433


Q ss_pred             eE--EEe-cCC-cEEEEEEccCCc-EE-EEeCCCcEEEEEcCC
Q 008510           64 VQ--SIE-HPG-CVWDAKFLENGD-IV-TACSDGVTRIWTVHS  100 (563)
Q Consensus        64 ~~--~l~-h~~-~V~~v~~~p~g~-i~-sgs~Dg~Irvwd~~~  100 (563)
                      ..  .+. +.+ ....++|+|+|+ ++ ++..++.|++|+++.
T Consensus       176 ~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~  218 (347)
T 3hfq_A          176 SEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDT  218 (347)
T ss_dssp             EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             EEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence            22  223 333 788999999998 54 456789999999874

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.85  E-value=1e-07  Score=94.97  Aligned_cols=201  Identities=13%  Similarity=0.093  Sum_probs=126.9

Q ss_pred             CCCE-EEEEECCCcEEEEcC-CCceeEEEec-C----CCcEEEEEEcCCC-eEEEEe------------CCCcEEEEc--
Q 008510            2 PGVG-IISASHDCTIRLWAL-TGQVLMEMVG-H----TAIVYSIDSHASG-LIVSGS------------EDRFAKIWK--   59 (563)
Q Consensus         2 ~g~~-l~s~s~DgtIrlWd~-~g~~i~~l~g-H----~~~V~~v~~~p~g-~l~s~s------------~D~tvriWd--   59 (563)
                      +|+. +++++.++.|++||+ +++.+..+.. +    ...+.+++|+|+| .+++++            .|+.|++||  
T Consensus        44 dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~  123 (337)
T 1pby_B           44 GGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE  123 (337)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETT
T ss_pred             CCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECC
Confidence            4555 466667899999999 7888877763 2    2256789999999 777765            679999999  


Q ss_pred             CCceeEEEecCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccccc----c-e-eEEeeccCC-----
Q 008510           60 DGVCVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL----S-Q-YKLCRKKVG-----  127 (563)
Q Consensus        60 ~~~~~~~l~h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v----~-~-~~~~~~~~~-----  127 (563)
                      +++.++.+.....+.+++|+|+|+ ++++  ++.|++||+.+++..............    . . ..+.....+     
T Consensus       124 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~  201 (337)
T 1pby_B          124 TLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATP  201 (337)
T ss_dssp             TTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEE
T ss_pred             CCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeee
Confidence            667777777666788999999998 7666  789999999988754332222111110    0 0 111111111     


Q ss_pred             ------------------ceEEEeCCCCceee------------ecccCCCeEEEEecCCCeEEEEEecccceEEEeCcE
Q 008510          128 ------------------GLKLEDLPGLEALQ------------IPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEV  177 (563)
Q Consensus       128 ------------------~i~~~d~~~~~~l~------------~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v  177 (563)
                                        .+.+||..+.+...            ...++||...++.   ...++.||..++.....   
T Consensus       202 ~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~---~~~v~~~d~~~~~~~~~---  275 (337)
T 1pby_B          202 FYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA---YNVLESFDLEKNASIKR---  275 (337)
T ss_dssp             EEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE---ESEEEEEETTTTEEEEE---
T ss_pred             eeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe---CCeEEEEECCCCcCcce---
Confidence                              46888887765431            2345566554444   24567777665532211   


Q ss_pred             eeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHH
Q 008510          178 VDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAA  224 (563)
Q Consensus       178 ~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a  224 (563)
                                  +...  ..+..+.+ +||+.++....+..+.+|++.
T Consensus       276 ------------~~~~--~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~  309 (337)
T 1pby_B          276 ------------VPLP--HSYYSVNVSTDGSTVWLGGALGDLAAYDAE  309 (337)
T ss_dssp             ------------EECS--SCCCEEEECTTSCEEEEESBSSEEEEEETT
T ss_pred             ------------ecCC--CceeeEEECCCCCEEEEEcCCCcEEEEECc
Confidence                        1111  22456666 677767666667777777764

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.83  E-value=2.4e-08  Score=108.57  Aligned_cols=205  Identities=9%  Similarity=0.041  Sum_probs=121.8

Q ss_pred             CCCEEEEEEC-CCcEEEEcCCCceeEEEecCC-CcEEEEEEcCCCeEEEEeC---CCcEEEEc--C--CceeEEEecCCc
Q 008510            2 PGVGIISASH-DCTIRLWALTGQVLMEMVGHT-AIVYSIDSHASGLIVSGSE---DRFAKIWK--D--GVCVQSIEHPGC   72 (563)
Q Consensus         2 ~g~~l~s~s~-DgtIrlWd~~g~~i~~l~gH~-~~V~~v~~~p~g~l~s~s~---D~tvriWd--~--~~~~~~l~h~~~   72 (563)
                      ||+.|++++. ||+++||++++.....+..|. ..+.+++|+|+..+++++.   +...++|.  .  ......+.....
T Consensus        32 DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~~~  111 (582)
T 3o4h_A           32 DGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKP  111 (582)
T ss_dssp             TTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTSTTCCEECTTSCS
T ss_pred             CCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccCCCccccccCCCC
Confidence            7899999988 999999999444445566665 6899999999954555554   56677776  2  222334443334


Q ss_pred             EEEEEEccCCc--EEEEeCCCcEEEEEcCCCceeceeeecccc--cccc-eeEEeeccC----CceEEEeCCCCceeeec
Q 008510           73 VWDAKFLENGD--IVTACSDGVTRIWTVHSDKVADSLELEAYA--SELS-QYKLCRKKV----GGLKLEDLPGLEALQIP  143 (563)
Q Consensus        73 V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~--~~v~-~~~~~~~~~----~~i~~~d~~~~~~l~~~  143 (563)
                      +...+|+|+|+  +++.+.++.+.+||+.+++...........  -+.+ ...+....+    ..|.+||+.+.+.....
T Consensus       112 ~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~  191 (582)
T 3o4h_A          112 MRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFD  191 (582)
T ss_dssp             BEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEEC
T ss_pred             ceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCCceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEee
Confidence            55678888886  344445555569999988743322211110  0111 222222222    56899998766543322


Q ss_pred             ----------ccCCCeEEEEecCCC-eEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEE--------c-
Q 008510          144 ----------GTNAGQTKVVREGDN-GVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVD--------I-  203 (563)
Q Consensus       144 ----------g~~dg~~~l~~~~~~-~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd--------~-  203 (563)
                                .++||...+....++ ..++.||..++... +               ..++. ..+..+.        + 
T Consensus       192 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~---------------~~~~~-~~~~~~~~~~~~~~~~s  254 (582)
T 3o4h_A          192 SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-D---------------LELPS-KDFSSYRPTAITWLGYL  254 (582)
T ss_dssp             CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-E---------------CCCSC-SHHHHHCCSEEEEEEEC
T ss_pred             cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-E---------------ccCCC-cChhhhhhccccceeEc
Confidence                      567777666444443 25778887665443 1               11111 1122222        5 


Q ss_pred             CCCCeeeeecCCCCCChhHH
Q 008510          204 GDGEPTRKLPYNRSDNPYDA  223 (563)
Q Consensus       204 ~dg~~~~~~~~n~~~~~w~~  223 (563)
                      +||..++....++..++|.+
T Consensus       255 pdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          255 PDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             TTSCEEEEEEETTEEEEEET
T ss_pred             CCCcEEEEEEcCCcEEEEEE
Confidence            77776777777777888877

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.83  E-value=1.1e-07  Score=95.29  Aligned_cols=209  Identities=13%  Similarity=0.066  Sum_probs=124.8

Q ss_pred             CCCE-EEEEECCCcEEEEcC-CCceeEEEecCC------CcEEEEEEcCCC-eEEEEeCC------------CcEEEEc-
Q 008510            2 PGVG-IISASHDCTIRLWAL-TGQVLMEMVGHT------AIVYSIDSHASG-LIVSGSED------------RFAKIWK-   59 (563)
Q Consensus         2 ~g~~-l~s~s~DgtIrlWd~-~g~~i~~l~gH~------~~V~~v~~~p~g-~l~s~s~D------------~tvriWd-   59 (563)
                      +|+. +++++.+++|.+||+ +++.+..+..+.      ..+.+++|+|+| .+++++.+            +.|.+|| 
T Consensus        53 dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~  132 (349)
T 1jmx_B           53 DNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFST  132 (349)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEG
T ss_pred             CCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEEC
Confidence            4664 456667899999999 788887776432      237889999999 77777765            8999999 


Q ss_pred             -C---CceeEEEecCCcEEEEEEccCCcEEEEeCCCcEEEEEcCCCceeceeeeccccc---------------------
Q 008510           60 -D---GVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYAS---------------------  114 (563)
Q Consensus        60 -~---~~~~~~l~h~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~---------------------  114 (563)
                       +   .+.+..+.++..+.+++|+|+|++++++  +.|++||..+++............                     
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (349)
T 1jmx_B          133 ADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEF  210 (349)
T ss_dssp             GGGGGBCCSEEEECCSSCCCEEECTTSCEEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEE
T ss_pred             CCccccceeeeccCCCcccceeECCCCcEEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeE
Confidence             4   3445566677789999999999955543  449999999887543322221000                     


Q ss_pred             -ccceeEE-------------------eeccCCceEEEeCCCC--ceeeecccC-CCeEEEEecCCCeEEEEEecccceE
Q 008510          115 -ELSQYKL-------------------CRKKVGGLKLEDLPGL--EALQIPGTN-AGQTKVVREGDNGVAYSWDMKEQKW  171 (563)
Q Consensus       115 -~v~~~~~-------------------~~~~~~~i~~~d~~~~--~~l~~~g~~-dg~~~l~~~~~~~~~~~wd~~~~~w  171 (563)
                       ......+                   .....+.++.+++...  .......++ ||...++.   ...++.||..++..
T Consensus       211 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~---~~~v~~~d~~~~~~  287 (349)
T 1jmx_B          211 SMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV---LNRLAKYDLKQRKL  287 (349)
T ss_dssp             EEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE---ESEEEEEETTTTEE
T ss_pred             EeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE---cCeEEEEECccCeE
Confidence             0000000                   1112234444444211  122223456 77766555   35678898877654


Q ss_pred             EEe---C-cEeeCCCCCCCceeecCcccCcEEEEEcCCCCeeeeecCC
Q 008510          172 DKL---G-EVVDGPDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYN  215 (563)
Q Consensus       172 ~~~---g-~v~~~~~~~~~~~~~~g~~~d~v~~vd~~dg~~~~~~~~n  215 (563)
                      ...   + ...+..-...++.++.+...+.|.-++...++.+..++.-
T Consensus       288 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          288 IKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             EEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             EEEEcCCCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence            322   1 1111111122445555555577888888777776665543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.82  E-value=1.6e-07  Score=95.31  Aligned_cols=186  Identities=10%  Similarity=0.089  Sum_probs=106.7

Q ss_pred             CCCEEEEEE-CCCcEEEEcC-C-Cce--eEEE---ec--------CCCcEEEEEEcCCC-eE-EEEeCCCcEEEEc-C--
Q 008510            2 PGVGIISAS-HDCTIRLWAL-T-GQV--LMEM---VG--------HTAIVYSIDSHASG-LI-VSGSEDRFAKIWK-D--   60 (563)
Q Consensus         2 ~g~~l~s~s-~DgtIrlWd~-~-g~~--i~~l---~g--------H~~~V~~v~~~p~g-~l-~s~s~D~tvriWd-~--   60 (563)
                      +|+++++++ .+++|.+|++ . +..  +...   .+        +...+++++|+|+| .+ +++..++.|++|+ +  
T Consensus       108 dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~  187 (361)
T 3scy_A          108 NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPN  187 (361)
T ss_dssp             CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCC
Confidence            567677666 5889999998 3 321  1111   11        23346899999999 45 4455588999998 2  


Q ss_pred             C-----c-ee-----EEEe--cCCcEEEEEEccCCc-EEEEe-CCCcEEEEEcCCCceeceeeecccccccceeEEeecc
Q 008510           61 G-----V-CV-----QSIE--HPGCVWDAKFLENGD-IVTAC-SDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKK  125 (563)
Q Consensus        61 ~-----~-~~-----~~l~--h~~~V~~v~~~p~g~-i~sgs-~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~  125 (563)
                      .     + ..     ..+.  +.....+++|+|+|+ +++++ .++.|++||+++++......+.....           
T Consensus       188 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~-----------  256 (361)
T 3scy_A          188 ANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTV-----------  256 (361)
T ss_dssp             CCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSS-----------
T ss_pred             CCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCC-----------
Confidence            2     2 21     1222  445789999999998 66666 68999999998765321111111000           


Q ss_pred             CCceEEEeCCCCceeeecccCCCeEEEEecCC-CeEEEEEecc--cceEEEeCcEeeCCCCCCCceeecCcccCcEEEEE
Q 008510          126 VGGLKLEDLPGLEALQIPGTNAGQTKVVREGD-NGVAYSWDMK--EQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVD  202 (563)
Q Consensus       126 ~~~i~~~d~~~~~~l~~~g~~dg~~~l~~~~~-~~~~~~wd~~--~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd  202 (563)
                               ..........++||.+.++...+ ...+.+|+..  .+.+..+..+..            |   ..+..+.
T Consensus       257 ---------~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~------------g---~~~~~~~  312 (361)
T 3scy_A          257 ---------NAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT------------G---IHPRNFI  312 (361)
T ss_dssp             ---------CCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC------------S---SCCCEEE
T ss_pred             ---------CCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC------------C---CCCceEE
Confidence                     00111233467788876665554 4566677753  444443322211            1   2244566


Q ss_pred             c-CCCCeeeeec-CCCCCChhH
Q 008510          203 I-GDGEPTRKLP-YNRSDNPYD  222 (563)
Q Consensus       203 ~-~dg~~~~~~~-~n~~~~~w~  222 (563)
                      + +||+.++... .+..+.+|.
T Consensus       313 ~spdg~~l~~~~~~~~~v~v~~  334 (361)
T 3scy_A          313 ITPNGKYLLVACRDTNVIQIFE  334 (361)
T ss_dssp             ECTTSCEEEEEETTTTEEEEEE
T ss_pred             ECCCCCEEEEEECCCCCEEEEE
Confidence            6 6776555554 344455543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.79  E-value=7.5e-07  Score=87.07  Aligned_cols=204  Identities=14%  Similarity=0.173  Sum_probs=123.8

Q ss_pred             CCCEEEEEECCCcEEEEcCCCceeEEEe------cCCCcEEEEEE-cCCC-eEEEEeC-CCcEEEEc-CCceeEEEe--c
Q 008510            2 PGVGIISASHDCTIRLWALTGQVLMEMV------GHTAIVYSIDS-HASG-LIVSGSE-DRFAKIWK-DGVCVQSIE--H   69 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~------gH~~~V~~v~~-~p~g-~l~s~s~-D~tvriWd-~~~~~~~l~--h   69 (563)
                      +|+.+++.+.++.|++||.+++.+..+.      +|...+.++++ .+++ .+++... ++.|++|+ +++.+..+.  +
T Consensus        40 ~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~  119 (286)
T 1q7f_A           40 QNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATI  119 (286)
T ss_dssp             TCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEECTTT
T ss_pred             CCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCCCcEEEEecCcc
Confidence            4677888888999999999888777764      34567899999 4677 4555433 88999999 888888776  3


Q ss_pred             CCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccc--------ccceeEEeeccCCceEEEeCCCCcee
Q 008510           70 PGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYAS--------ELSQYKLCRKKVGGLKLEDLPGLEAL  140 (563)
Q Consensus        70 ~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~~i~~~d~~~~~~l  140 (563)
                      ...++++++.|+|+ +++...++.|++||..... ...........        .-....++...++.|.+||..+....
T Consensus       120 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~-~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~  198 (286)
T 1q7f_A          120 LQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNV-LHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLR  198 (286)
T ss_dssp             CSCEEEEEECTTSCEEEEETTTTEEEEECTTSCE-EEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEE
T ss_pred             CCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCE-EEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEE
Confidence            34799999999999 5565678899999975432 22111101000        11234444555778999997553221


Q ss_pred             eec------------ccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecC-cccCcEEEEEc-CCC
Q 008510          141 QIP------------GTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDG-IQYDYVFDVDI-GDG  206 (563)
Q Consensus       141 ~~~------------g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g-~~~d~v~~vd~-~dg  206 (563)
                      ...            ..++|.+.+....++..+..|+....       .+.         .+.. ........+.+ ++|
T Consensus       199 ~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~-------~~~---------~~~~~~~~~~~~~i~~~~~g  262 (286)
T 1q7f_A          199 QIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ-------LIS---------ALESKVKHAQCFDVALMDDG  262 (286)
T ss_dssp             EESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSC-------EEE---------EEEESSCCSCEEEEEEETTT
T ss_pred             EEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCC-------EEE---------EEcccCCCCcceeEEECCCC
Confidence            111            22344433333333224445553221       111         1111 11134667777 788


Q ss_pred             CeeeeecCCCCCChhHH
Q 008510          207 EPTRKLPYNRSDNPYDA  223 (563)
Q Consensus       207 ~~~~~~~~n~~~~~w~~  223 (563)
                      ..+.. ..|..+.+|+.
T Consensus       263 ~l~vs-~~~~~v~v~~~  278 (286)
T 1q7f_A          263 SVVLA-SKDYRLYIYRY  278 (286)
T ss_dssp             EEEEE-ETTTEEEEEEC
T ss_pred             cEEEE-CCCCeEEEEEc
Confidence            75555 56777888864

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.76  E-value=5.5e-07  Score=90.44  Aligned_cols=209  Identities=10%  Similarity=-0.002  Sum_probs=128.5

Q ss_pred             CCCEEEEEECC------------------------CcEEEEcC-CCceeEEEe-cCCCcEEEEEEcCCC-eEEEEeCCCc
Q 008510            2 PGVGIISASHD------------------------CTIRLWAL-TGQVLMEMV-GHTAIVYSIDSHASG-LIVSGSEDRF   54 (563)
Q Consensus         2 ~g~~l~s~s~D------------------------gtIrlWd~-~g~~i~~l~-gH~~~V~~v~~~p~g-~l~s~s~D~t   54 (563)
                      +|+.+++.+.+                        ++|.+||. +|+.+..+. ++-.....++++|+| .+++...++.
T Consensus        34 ~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~  113 (329)
T 3fvz_A           34 KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQ  113 (329)
T ss_dssp             TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTE
T ss_pred             CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCCCE
Confidence            47788888777                        47999999 688877665 455688999999999 7888888999


Q ss_pred             EEEEc-CCc--eeEEEe----------cCCcEEEEEEcc-CCc-EEEEe-CCCcEEEEEcCCCceeceeeec--------
Q 008510           55 AKIWK-DGV--CVQSIE----------HPGCVWDAKFLE-NGD-IVTAC-SDGVTRIWTVHSDKVADSLELE--------  110 (563)
Q Consensus        55 vriWd-~~~--~~~~l~----------h~~~V~~v~~~p-~g~-i~sgs-~Dg~Irvwd~~~~~~~~~~~~~--------  110 (563)
                      |++|+ +++  .+.++.          +-...+.++++| +|+ +++.+ .++.|++||.. ++........        
T Consensus       114 v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~~~~~~~~~g~~~~~~~  192 (329)
T 3fvz_A          114 VFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GKFVTQWGEESSGSSPRP  192 (329)
T ss_dssp             EEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SCEEEEECEECCSSSCCT
T ss_pred             EEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CCEEEEeccCCCCCCCCC
Confidence            99999 666  666663          223689999999 788 45555 58999999944 4433221110        


Q ss_pred             -------ccc-ccc-ceeEEeeccCCceEEEeCCCCceeeec---ccCCCeEEEEecC---------------CCeEEEE
Q 008510          111 -------AYA-SEL-SQYKLCRKKVGGLKLEDLPGLEALQIP---GTNAGQTKVVREG---------------DNGVAYS  163 (563)
Q Consensus       111 -------~~~-~~v-~~~~~~~~~~~~i~~~d~~~~~~l~~~---g~~dg~~~l~~~~---------------~~~~~~~  163 (563)
                             ... ..- ..+.++...++.|.+|+..+++.+...   +...+...+...+               ....++.
T Consensus       193 ~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~  272 (329)
T 3fvz_A          193 GQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFV  272 (329)
T ss_dssp             TEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEE
T ss_pred             cccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEE
Confidence                   000 011 244445556678999998755444332   1222222222222               1112444


Q ss_pred             EecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHH
Q 008510          164 WDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAA  224 (563)
Q Consensus       164 wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a  224 (563)
                      |+..++.....   .+.          ......+...+.+ ++|.....-..|..+..|+..
T Consensus       273 ~~~~~g~~~~~---~~~----------~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~  321 (329)
T 3fvz_A          273 MNFSSGEIIDV---FKP----------VRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT  321 (329)
T ss_dssp             EETTTCCEEEE---ECC----------SSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred             EEcCCCeEEEE---EcC----------CCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence            55433322211   000          0122356788888 888766777777777777653

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.76  E-value=4e-08  Score=110.32  Aligned_cols=97  Identities=9%  Similarity=-0.007  Sum_probs=76.8

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcE-----EEEEEcCCC-eEEEEeCC---------CcEEEEc--CCce
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIV-----YSIDSHASG-LIVSGSED---------RFAKIWK--DGVC   63 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V-----~~v~~~p~g-~l~s~s~D---------~tvriWd--~~~~   63 (563)
                      ||++++++  |++|++||+ +|++...+.+|....     .+++|+||| .++.++.|         +.+.+||  ++++
T Consensus        27 dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~  104 (740)
T 4a5s_A           27 DHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL  104 (740)
T ss_dssp             SSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE
T ss_pred             CCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcE
Confidence            46677775  999999999 888888888887532     347889999 78888876         4556999  4554


Q ss_pred             eEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCc
Q 008510           64 VQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDK  102 (563)
Q Consensus        64 ~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~  102 (563)
                      . .+. |+..+..++|+|||+ ||.+ .|+.|++|+..++.
T Consensus       105 ~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~  143 (740)
T 4a5s_A          105 I-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLP  143 (740)
T ss_dssp             C-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSC
T ss_pred             E-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCc
Confidence            3 444 778999999999999 7666 68999999998876

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.75  E-value=8.5e-07  Score=86.92  Aligned_cols=98  Identities=18%  Similarity=0.190  Sum_probs=82.7

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCC-CcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEec--CCcEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHT-AIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIEH--PGCVWD   75 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~-~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~h--~~~V~~   75 (563)
                      ||+.|++++.|+.|.+||. +|+.+.++..|. ..+.++.++|+| .++  +.++.|..|| +++.+..+..  ...+.+
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~~G~~~W~~~~~~~~~~~~   81 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITRDGRELWNIAAPAGCEMQT   81 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECTTSCEEEEEECCTTCEEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECCCCCEEEEEcCCCCccccc
Confidence            6899999999999999999 999999999876 578999999999 666  4578899999 9999999883  348999


Q ss_pred             EEEccCCc-EEEEeC-CCcEEEEEcCCCc
Q 008510           76 AKFLENGD-IVTACS-DGVTRIWTVHSDK  102 (563)
Q Consensus        76 v~~~p~g~-i~sgs~-Dg~Irvwd~~~~~  102 (563)
                      +.+.|+|+ +++.+. ++.|..+|. +++
T Consensus        82 ~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk  109 (276)
T 3no2_A           82 ARILPDGNALVAWCGHPSTILEVNM-KGE  109 (276)
T ss_dssp             EEECTTSCEEEEEESTTEEEEEECT-TSC
T ss_pred             cEECCCCCEEEEecCCCCEEEEEeC-CCC
Confidence            99999999 666666 677777776 455

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.75  E-value=1.2e-07  Score=103.10  Aligned_cols=123  Identities=13%  Similarity=0.015  Sum_probs=87.8

Q ss_pred             EEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCC----CcEEEEc-CCceeEEEe-cCCcEEEE
Q 008510            5 GIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSED----RFAKIWK-DGVCVQSIE-HPGCVWDA   76 (563)
Q Consensus         5 ~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D----~tvriWd-~~~~~~~l~-h~~~V~~v   76 (563)
                      .+++++.|+ +.+||+ +|++..... |..  .+++|+||| .+++++.|    ++|++|| .+...+.+. |.+.+.++
T Consensus       125 ~~~s~~~~~-~~l~d~~~g~~~~l~~-~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~  200 (582)
T 3o4h_A          125 VFTGATEDR-VALYALDGGGLRELAR-LPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSA  200 (582)
T ss_dssp             EEEEECSSC-EEEEEEETTEEEEEEE-ESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEE
T ss_pred             EEEecCCCC-ceEEEccCCcEEEeec-CCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccc
Confidence            455555555 559999 666554444 333  789999999 88878777    7899999 433344555 88899999


Q ss_pred             EEccCCc-EEEEeCCC--cEEEEEcCCCceeceeeeccccc---------------ccc-eeEEeeccCCceEEEeC
Q 008510           77 KFLENGD-IVTACSDG--VTRIWTVHSDKVADSLELEAYAS---------------ELS-QYKLCRKKVGGLKLEDL  134 (563)
Q Consensus        77 ~~~p~g~-i~sgs~Dg--~Irvwd~~~~~~~~~~~~~~~~~---------------~v~-~~~~~~~~~~~i~~~d~  134 (563)
                      +|+|||+ |+++..|+  .|++||+.+++..   .+..+..               ..+ ...++...++.+++|++
T Consensus       201 ~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          201 SISPGMKVTAGLETAREARLVTVDPRDGSVE---DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             EECTTSCEEEEEECSSCEEEEEECTTTCCEE---ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             eECCCCCEEEEccCCCeeEEEEEcCCCCcEE---EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            9999999 88888888  8999999988744   2222111               111 45566777889999998

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.69  E-value=2.3e-06  Score=85.78  Aligned_cols=105  Identities=10%  Similarity=0.102  Sum_probs=83.8

Q ss_pred             CCCEEEEEECCCcEEEEcCCCc--eeEEE---------ecCCCcEEEEEEcC-CC-eEEEEe-CCCcEEEEc-CCceeEE
Q 008510            2 PGVGIISASHDCTIRLWALTGQ--VLMEM---------VGHTAIVYSIDSHA-SG-LIVSGS-EDRFAKIWK-DGVCVQS   66 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~~g~--~i~~l---------~gH~~~V~~v~~~p-~g-~l~s~s-~D~tvriWd-~~~~~~~   66 (563)
                      +|+.+++.+.++.|++|+.+|+  .+.++         .++.....+++++| +| .+++.+ .++.|++|+ +++.+..
T Consensus       101 ~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~  180 (329)
T 3fvz_A          101 DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQ  180 (329)
T ss_dssp             TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEE
T ss_pred             CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEE
Confidence            4778888888999999999766  66666         35566789999999 67 677776 689999999 8888888


Q ss_pred             EecC-----------CcEEEEEEccC-Cc-EEEEeCCCcEEEEEcCCCceece
Q 008510           67 IEHP-----------GCVWDAKFLEN-GD-IVTACSDGVTRIWTVHSDKVADS  106 (563)
Q Consensus        67 l~h~-----------~~V~~v~~~p~-g~-i~sgs~Dg~Irvwd~~~~~~~~~  106 (563)
                      +...           ...+.+++.|+ |. +++...++.|++||..+++....
T Consensus       181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~  233 (329)
T 3fvz_A          181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVRE  233 (329)
T ss_dssp             ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred             eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEE
Confidence            7521           13899999998 77 57777889999999997775443

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=98.69  E-value=1e-07  Score=106.26  Aligned_cols=85  Identities=12%  Similarity=0.049  Sum_probs=63.2

Q ss_pred             CCCEEEEEEC---------CCcEEEEcC-CCcee--EEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEE
Q 008510            2 PGVGIISASH---------DCTIRLWAL-TGQVL--MEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQS   66 (563)
Q Consensus         2 ~g~~l~s~s~---------DgtIrlWd~-~g~~i--~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~   66 (563)
                      ||++|++++.         |++|++||+ +|+++  ..+   ...+.+++|+||| .++.++ |++|++|+  ++++.+.
T Consensus        70 Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l  145 (719)
T 1z68_A           70 DRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQI  145 (719)
T ss_dssp             TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEEC
T ss_pred             CCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEE
Confidence            6889999887         799999999 56552  223   3568899999999 777775 78999999  5555432


Q ss_pred             Ee--cCCcE-----------------EEEEEccCCc-EEEEeCC
Q 008510           67 IE--HPGCV-----------------WDAKFLENGD-IVTACSD   90 (563)
Q Consensus        67 l~--h~~~V-----------------~~v~~~p~g~-i~sgs~D   90 (563)
                      ..  +...|                 .+++|+|||+ |++++.|
T Consensus       146 ~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d  189 (719)
T 1z68_A          146 TFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFN  189 (719)
T ss_dssp             CCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEE
T ss_pred             ecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEEC
Confidence            22  22223                 4899999999 8888765

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=98.67  E-value=4.4e-07  Score=92.50  Aligned_cols=99  Identities=9%  Similarity=0.082  Sum_probs=71.6

Q ss_pred             CCCEEEEEECCCcEEEEcC--CCceeEEEe--cCCCcEEEEEEcCCC-e-E-EEEe-------------CCCcEEEEc--
Q 008510            2 PGVGIISASHDCTIRLWAL--TGQVLMEMV--GHTAIVYSIDSHASG-L-I-VSGS-------------EDRFAKIWK--   59 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~--~g~~i~~l~--gH~~~V~~v~~~p~g-~-l-~s~s-------------~D~tvriWd--   59 (563)
                      +|+++++++.+ +|++|++  +|++.....  .+ +...+++|+|+| . + ++++             .++++++|+  
T Consensus        50 dg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~  127 (365)
T 1jof_A           50 ERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVS  127 (365)
T ss_dssp             TSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEEC
T ss_pred             CCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccC
Confidence            57888999888 9999998  576654332  11 235568999999 4 3 3442             689999999  


Q ss_pred             -CCceeEEEe-----cCCcEEEEEEccCCc-EEEEe-CCCcEEEEEcC-CCc
Q 008510           60 -DGVCVQSIE-----HPGCVWDAKFLENGD-IVTAC-SDGVTRIWTVH-SDK  102 (563)
Q Consensus        60 -~~~~~~~l~-----h~~~V~~v~~~p~g~-i~sgs-~Dg~Irvwd~~-~~~  102 (563)
                       +++....+.     +...+.+++|+|+|+ ++++. .++.|++||+. +++
T Consensus       128 ~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~  179 (365)
T 1jof_A          128 ETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGE  179 (365)
T ss_dssp             TTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC
T ss_pred             CCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCC
Confidence             355544443     345899999999998 66655 46899999998 665

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.65  E-value=2.8e-06  Score=86.00  Aligned_cols=195  Identities=12%  Similarity=0.112  Sum_probs=113.4

Q ss_pred             CCCEEEEEECC----CcEEEEcC-C--Cc--eeEEEecCCCcEEEEEEcCCC-eEEEE-eCCCcEEEEc--CCce----e
Q 008510            2 PGVGIISASHD----CTIRLWAL-T--GQ--VLMEMVGHTAIVYSIDSHASG-LIVSG-SEDRFAKIWK--DGVC----V   64 (563)
Q Consensus         2 ~g~~l~s~s~D----gtIrlWd~-~--g~--~i~~l~gH~~~V~~v~~~p~g-~l~s~-s~D~tvriWd--~~~~----~   64 (563)
                      +|+++++++.+    +.|++|++ .  |+  .+.....+......+++  ++ .++++ ..+++|.+|+  ....    .
T Consensus        60 dg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~  137 (361)
T 3scy_A           60 DGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPAS  137 (361)
T ss_dssp             TSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCS
T ss_pred             CCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccc
Confidence            57889999886    89999998 2  44  34445556667788888  65 55544 4688999999  2222    2


Q ss_pred             EEEecC-----------CcEEEEEEccCCc-EEEEe-CCCcEEEEEcCCCceeceee-ecccccccceeEEeeccCCceE
Q 008510           65 QSIEHP-----------GCVWDAKFLENGD-IVTAC-SDGVTRIWTVHSDKVADSLE-LEAYASELSQYKLCRKKVGGLK  130 (563)
Q Consensus        65 ~~l~h~-----------~~V~~v~~~p~g~-i~sgs-~Dg~Irvwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~i~  130 (563)
                      ..+.+.           ..+++++|+|+|+ +++++ .++.|++|+++......... +...              +...
T Consensus       138 ~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~--------------~~~~  203 (361)
T 3scy_A          138 DVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTK--------------GTPE  203 (361)
T ss_dssp             EEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEE--------------EEEE
T ss_pred             eeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeec--------------cccc
Confidence            222221           2468899999998 65444 58999999987654100000 0000              0000


Q ss_pred             EEeCC-CCceeeecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCe
Q 008510          131 LEDLP-GLEALQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEP  208 (563)
Q Consensus       131 ~~d~~-~~~~l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~  208 (563)
                      ....+ +........++||...++.......+.+|+...+.+..+..+.....          + ......+.+ +||+.
T Consensus       204 ~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~----------~-~~~~~~i~~spdg~~  272 (361)
T 3scy_A          204 AFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTV----------N-AQGSGDIHLSPDGKY  272 (361)
T ss_dssp             EEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSS----------C-CCCEEEEEECTTSSE
T ss_pred             ceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCC----------C-CCCcccEEECCCCCE
Confidence            01111 11122344678888776666555677888877776654433322111          1 123467777 78887


Q ss_pred             eeeecCC--CCCChhHH
Q 008510          209 TRKLPYN--RSDNPYDA  223 (563)
Q Consensus       209 ~~~~~~n--~~~~~w~~  223 (563)
                      ++....+  ..+.+|++
T Consensus       273 l~v~~~~~~~~i~v~~~  289 (361)
T 3scy_A          273 LYASNRLKADGVAIFKV  289 (361)
T ss_dssp             EEEEECSSSCEEEEEEE
T ss_pred             EEEECCCCCCEEEEEEE
Confidence            6554443  55677776

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.65  E-value=4.8e-07  Score=92.37  Aligned_cols=101  Identities=12%  Similarity=0.119  Sum_probs=78.1

Q ss_pred             CCEEEEEE------CCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEe----------CCCcEEEEc--CCc
Q 008510            3 GVGIISAS------HDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGS----------EDRFAKIWK--DGV   62 (563)
Q Consensus         3 g~~l~s~s------~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s----------~D~tvriWd--~~~   62 (563)
                      +++++.+.      .|++|.+||. +++.+.++..+..+  .++|+|+| .+..++          .|++|.+||  +.+
T Consensus        15 ~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~   92 (361)
T 2oiz_A           15 ENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT   92 (361)
T ss_dssp             GGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC
T ss_pred             CCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc
Confidence            45555543      4789999998 89998888877655  89999999 666665          367899999  778


Q ss_pred             eeEEEe-c------CCcEEEEEEccCCc-EEEEeC--CCcEEEEEcCCCceec
Q 008510           63 CVQSIE-H------PGCVWDAKFLENGD-IVTACS--DGVTRIWTVHSDKVAD  105 (563)
Q Consensus        63 ~~~~l~-h------~~~V~~v~~~p~g~-i~sgs~--Dg~Irvwd~~~~~~~~  105 (563)
                      .++++. .      ......++++|+|+ ++++..  ++.|.+||+.+++...
T Consensus        93 ~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~  145 (361)
T 2oiz_A           93 FEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVE  145 (361)
T ss_dssp             EEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEE
T ss_pred             EEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEE
Confidence            888876 2      23577899999999 665543  6899999999987544

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=98.64  E-value=8.9e-07  Score=90.22  Aligned_cols=90  Identities=7%  Similarity=0.023  Sum_probs=67.2

Q ss_pred             CCCcEEEEcC--CCceeEEEe----cCCCcEEEEEEcCCC-eEEEEe-CCCcEEEEc-C--Ccee--EEEe---cCCcEE
Q 008510           11 HDCTIRLWAL--TGQVLMEMV----GHTAIVYSIDSHASG-LIVSGS-EDRFAKIWK-D--GVCV--QSIE---HPGCVW   74 (563)
Q Consensus        11 ~DgtIrlWd~--~g~~i~~l~----gH~~~V~~v~~~p~g-~l~s~s-~D~tvriWd-~--~~~~--~~l~---h~~~V~   74 (563)
                      .++++++|++  +|+....+.    .+...+.+++|+|+| .++++. .+++|++|+ .  ++..  ..+.   |...++
T Consensus       117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~  196 (365)
T 1jof_A          117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR  196 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred             CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence            6999999998  476655544    356789999999999 666655 467999999 5  4432  3343   245799


Q ss_pred             EEEEccCCc-EEEEeC-CCcEEEEEcCC
Q 008510           75 DAKFLENGD-IVTACS-DGVTRIWTVHS  100 (563)
Q Consensus        75 ~v~~~p~g~-i~sgs~-Dg~Irvwd~~~  100 (563)
                      .++|+|+|+ +++++. ++.|.+|+++.
T Consensus       197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~  224 (365)
T 1jof_A          197 WVAMHPTGNYLYALMEAGNRICEYVIDP  224 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             EeEECCCCCEEEEEECCCCeEEEEEEeC
Confidence            999999998 666664 78999998763

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.57  E-value=3.6e-06  Score=85.81  Aligned_cols=101  Identities=5%  Similarity=-0.106  Sum_probs=74.4

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEE--EcCCC-eEEEE----------------------eCCCcE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSID--SHASG-LIVSG----------------------SEDRFA   55 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~--~~p~g-~l~s~----------------------s~D~tv   55 (563)
                      ||+.|+.++.++.|++||+ +++....+..|...+....  ++|++ .++..                      +.+..|
T Consensus        91 dg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  170 (388)
T 3pe7_A           91 DDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRL  170 (388)
T ss_dssp             TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceE
Confidence            6889999999999999999 7777777777777665544  47888 55532                      244678


Q ss_pred             EEEc--CCceeEEEecCCcEEEEEEcc-CCc-EEEEeCC------CcEEEEEcCCCc
Q 008510           56 KIWK--DGVCVQSIEHPGCVWDAKFLE-NGD-IVTACSD------GVTRIWTVHSDK  102 (563)
Q Consensus        56 riWd--~~~~~~~l~h~~~V~~v~~~p-~g~-i~sgs~D------g~Irvwd~~~~~  102 (563)
                      .+||  +++......+...+..++|+| +|+ |+..+.+      ..|.++|...+.
T Consensus       171 ~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~  227 (388)
T 3pe7_A          171 MRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN  227 (388)
T ss_dssp             EEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC
T ss_pred             EEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc
Confidence            9999  555444444777899999999 998 7666653      378888876654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.54  E-value=5.3e-07  Score=99.41  Aligned_cols=100  Identities=15%  Similarity=0.088  Sum_probs=73.3

Q ss_pred             CCCE-EEEEEC-CCcEEEEcCC--C-ceeEEEec-----CCCcEEEEEEcCCC-eEEEEeCC----------CcEEEEc-
Q 008510            2 PGVG-IISASH-DCTIRLWALT--G-QVLMEMVG-----HTAIVYSIDSHASG-LIVSGSED----------RFAKIWK-   59 (563)
Q Consensus         2 ~g~~-l~s~s~-DgtIrlWd~~--g-~~i~~l~g-----H~~~V~~v~~~p~g-~l~s~s~D----------~tvriWd-   59 (563)
                      ||+. ++.++. +..|.+|+..  | .....+..     |...+.+++|+||| .+++++.|          .+|++|+ 
T Consensus        89 Dg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~  168 (662)
T 3azo_A           89 AGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPL  168 (662)
T ss_dssp             SSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEET
T ss_pred             CCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEEC
Confidence            4666 665543 4556666666  4 55667766     77789999999999 88888877          5899999 


Q ss_pred             CC------ceeEEEe--cCCcEEEEEEccCCc-EEEEeCCC--------cEEEEEcC-CC
Q 008510           60 DG------VCVQSIE--HPGCVWDAKFLENGD-IVTACSDG--------VTRIWTVH-SD  101 (563)
Q Consensus        60 ~~------~~~~~l~--h~~~V~~v~~~p~g~-i~sgs~Dg--------~Irvwd~~-~~  101 (563)
                      .+      .....+.  +...+.+++|+|||+ |+.++.++        .|++||+. ++
T Consensus       169 ~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g  228 (662)
T 3azo_A          169 DGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDG  228 (662)
T ss_dssp             TSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTS
T ss_pred             CCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCC
Confidence            44      3444443  456888999999999 87777553        79999998 56

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.53  E-value=3.1e-06  Score=82.61  Aligned_cols=99  Identities=14%  Similarity=0.251  Sum_probs=80.3

Q ss_pred             CCCEEEEEECCCcEEEEcCCCceeEEEe--cCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEecC---CcEE
Q 008510            2 PGVGIISASHDCTIRLWALTGQVLMEMV--GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIEHP---GCVW   74 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~--gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~h~---~~V~   74 (563)
                      +|+.+++.+.++.|++|+.+|+.+..+.  ++...+.+++++|+| .+++.+.++.|++|+ +++.+..+...   ..+.
T Consensus       131 ~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~  210 (286)
T 1q7f_A          131 KGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPI  210 (286)
T ss_dssp             TSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEE
T ss_pred             CCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCc
Confidence            4677777778899999999888877775  455678999999999 777777899999999 88888877632   5789


Q ss_pred             EEEEccCCc-EEEEeCCC-cEEEEEcCC
Q 008510           75 DAKFLENGD-IVTACSDG-VTRIWTVHS  100 (563)
Q Consensus        75 ~v~~~p~g~-i~sgs~Dg-~Irvwd~~~  100 (563)
                      .+++.++|+ +++...++ .|++||...
T Consensus       211 ~i~~d~~G~l~v~~~~~~~~i~~~~~~g  238 (286)
T 1q7f_A          211 GVGINSNGEILIADNHNNFNLTIFTQDG  238 (286)
T ss_dssp             EEEECTTCCEEEEECSSSCEEEEECTTS
T ss_pred             EEEECCCCCEEEEeCCCCEEEEEECCCC
Confidence            999999999 55555665 999999643

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.50  E-value=3.4e-05  Score=83.38  Aligned_cols=168  Identities=13%  Similarity=0.009  Sum_probs=118.5

Q ss_pred             CEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc----CCceeEEEecCCcEEEEE
Q 008510            4 VGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK----DGVCVQSIEHPGCVWDAK   77 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd----~~~~~~~l~h~~~V~~v~   77 (563)
                      ..+++...|++|.+||. +++.+.++... ..++.+.++||| +++++++|+.|.+||    +++.+..+........++
T Consensus       168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia  246 (567)
T 1qks_A          168 LFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIE  246 (567)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEE
T ss_pred             eEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeE
Confidence            46778888999999999 88888888643 456799999999 788889999999999    345666666555678999


Q ss_pred             Ec----cCCc-EE-EEeCCCcEEEEEcCCCceeceeeecccc--------c-cc---------ceeEEeeccCCceEEEe
Q 008510           78 FL----ENGD-IV-TACSDGVTRIWTVHSDKVADSLELEAYA--------S-EL---------SQYKLCRKKVGGLKLED  133 (563)
Q Consensus        78 ~~----p~g~-i~-sgs~Dg~Irvwd~~~~~~~~~~~~~~~~--------~-~v---------~~~~~~~~~~~~i~~~d  133 (563)
                      |+    |+|+ ++ +.-.++.|.|||..+.+...........        . .+         ..+.+.....|.|.+.|
T Consensus       247 ~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd  326 (567)
T 1qks_A          247 TSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVD  326 (567)
T ss_dssp             ECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred             EccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEe
Confidence            99    6998 54 4455699999999888765443332210        0 11         12333445568888888


Q ss_pred             CCCCceee------------ecccCCCeEEEEecCCCeEEEEEecccceEE
Q 008510          134 LPGLEALQ------------IPGTNAGQTKVVREGDNGVAYSWDMKEQKWD  172 (563)
Q Consensus       134 ~~~~~~l~------------~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~  172 (563)
                      ......+.            ...+++|.+.++.......+..+|..+++-.
T Consensus       327 ~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~  377 (567)
T 1qks_A          327 YTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV  377 (567)
T ss_dssp             TTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEE
T ss_pred             cCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEE
Confidence            76542211            1256788888777765566777998887644

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.49  E-value=3.1e-06  Score=93.20  Aligned_cols=101  Identities=13%  Similarity=0.061  Sum_probs=75.9

Q ss_pred             CCCEEEEEECC----------CcEEEEcCCC------ceeEEEe-cCCCcEEEEEEcCCC-eEEEEeCCC--------cE
Q 008510            2 PGVGIISASHD----------CTIRLWALTG------QVLMEMV-GHTAIVYSIDSHASG-LIVSGSEDR--------FA   55 (563)
Q Consensus         2 ~g~~l~s~s~D----------gtIrlWd~~g------~~i~~l~-gH~~~V~~v~~~p~g-~l~s~s~D~--------tv   55 (563)
                      ||+.|++++.|          .+|++|++.+      .....+. .|...+.+++|+||| .++.++.|+        .|
T Consensus       140 Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i  219 (662)
T 3azo_A          140 ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTEL  219 (662)
T ss_dssp             TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEE
T ss_pred             CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEE
Confidence            68899999887          6899999954      4456666 677888999999999 787777553        69


Q ss_pred             EEEc-C-Cc---eeEEEe--cCCcEEEEEEccCCc-EEEEeCCC--cEEEEEcCCCc
Q 008510           56 KIWK-D-GV---CVQSIE--HPGCVWDAKFLENGD-IVTACSDG--VTRIWTVHSDK  102 (563)
Q Consensus        56 riWd-~-~~---~~~~l~--h~~~V~~v~~~p~g~-i~sgs~Dg--~Irvwd~~~~~  102 (563)
                      ++|| . ..   ....+.  |...+.+++|+|||+ ++++..|+  .|.+||..+++
T Consensus       220 ~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~  276 (662)
T 3azo_A          220 KTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGA  276 (662)
T ss_dssp             EEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCC
T ss_pred             EEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCc
Confidence            9999 5 22   333343  467999999999999 66777788  56666665665

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.47  E-value=2.8e-06  Score=86.61  Aligned_cols=101  Identities=9%  Similarity=-0.106  Sum_probs=73.1

Q ss_pred             CCCEEEEEEC-CCc--EEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcE
Q 008510            2 PGVGIISASH-DCT--IRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCV   73 (563)
Q Consensus         2 ~g~~l~s~s~-Dgt--IrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V   73 (563)
                      ||++|+.++. |+.  |.+||+ +|+......+|...+.++.|+|+| .++.++.++.+++||  +++...... +...+
T Consensus        46 Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~  125 (388)
T 3pe7_A           46 DGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWV  125 (388)
T ss_dssp             TSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEE
T ss_pred             CCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcc
Confidence            5888999888 774  778888 677766667777777678899999 899999999999999  666655555 44445


Q ss_pred             EEEE--EccCCc-EEEE----------------------eCCCcEEEEEcCCCc
Q 008510           74 WDAK--FLENGD-IVTA----------------------CSDGVTRIWTVHSDK  102 (563)
Q Consensus        74 ~~v~--~~p~g~-i~sg----------------------s~Dg~Irvwd~~~~~  102 (563)
                      ....  ++|+|. ++..                      ..++.|++||+.+++
T Consensus       126 ~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~  179 (388)
T 3pe7_A          126 GYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE  179 (388)
T ss_dssp             EEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC
T ss_pred             cccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc
Confidence            4444  478888 4421                      234567777877765

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.44  E-value=1.6e-06  Score=97.16  Aligned_cols=95  Identities=9%  Similarity=-0.010  Sum_probs=71.1

Q ss_pred             CCCEEEEEECC---------CcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe
Q 008510            2 PGVGIISASHD---------CTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE   68 (563)
Q Consensus         2 ~g~~l~s~s~D---------gtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~   68 (563)
                      ||++++.+++|         +.+.+||+ +|++ ..+.+|.+.+...+|+||| .++.++ |+.|++|+  ++++. .+.
T Consensus        72 dg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~-~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~-~lt  148 (740)
T 4a5s_A           72 DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSY-RIT  148 (740)
T ss_dssp             TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCE-ECC
T ss_pred             CCCEEEEEECCeeeEEEccceEEEEEECCCCcE-EEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceE-EEc
Confidence            68899999987         55669999 5554 4577888999999999999 777774 78999999  44443 333


Q ss_pred             ---cCCcE-----------------EEEEEccCCc-EEEEeCCCc-EEEEEcC
Q 008510           69 ---HPGCV-----------------WDAKFLENGD-IVTACSDGV-TRIWTVH   99 (563)
Q Consensus        69 ---h~~~V-----------------~~v~~~p~g~-i~sgs~Dg~-Irvwd~~   99 (563)
                         +...+                 ..+.|+|||+ |+.++.|.+ +++|++.
T Consensus       149 ~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~  201 (740)
T 4a5s_A          149 WTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYS  201 (740)
T ss_dssp             SCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEE
T ss_pred             CCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEE
Confidence               22223                 3489999999 888776654 8888764

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.41  E-value=1.2e-06  Score=89.69  Aligned_cols=95  Identities=7%  Similarity=0.002  Sum_probs=78.3

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKF   78 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~~   78 (563)
                      ||+.++.| .++.|++||+ +.........|...|.++.+.+. .++.++.||++.+||  ++...+   +...|.|++|
T Consensus        96 d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p-~~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~W  170 (388)
T 1xip_A           96 HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN-TLVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDV  170 (388)
T ss_dssp             ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS-EEEEEETTSEEEEEETTTCCEEE---EEESEEEEEE
T ss_pred             CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC-CEEEEECCCCEEEEEccCCcccc---ccCCceEEEE
Confidence            46788888 8899999998 44455567788888998887755 488899999999999  455433   4458999999


Q ss_pred             ccCCcEEEEeCCCcEEEEEcCCCc
Q 008510           79 LENGDIVTACSDGVTRIWTVHSDK  102 (563)
Q Consensus        79 ~p~g~i~sgs~Dg~Irvwd~~~~~  102 (563)
                      +|+| ++.|+.||++++|+.+.+.
T Consensus       171 SpkG-~~vg~~dg~i~~~~~~~~~  193 (388)
T 1xip_A          171 TNSQ-LAVLLKDRSFQSFAWRNGE  193 (388)
T ss_dssp             CSSE-EEEEETTSCEEEEEEETTE
T ss_pred             cCCc-eEEEEcCCcEEEEcCCCcc
Confidence            9999 8889999999999988776

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.33  E-value=4.6e-05  Score=76.27  Aligned_cols=136  Identities=15%  Similarity=0.037  Sum_probs=92.2

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecCC------c
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPG------C   72 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~------~   72 (563)
                      ++.+++...+++|.+||. +++.+.++.. ......+++++++ .+++...+++|.+||  +++....+....      .
T Consensus        54 ~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~  132 (328)
T 3dsm_A           54 GIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGS  132 (328)
T ss_dssp             TEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCB
T ss_pred             CEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCC
Confidence            345666666899999999 8999888864 4667899998988 555555899999999  677777777333      5


Q ss_pred             EEEEEEccCCcEEEEe--CCCcEEEEEcCCCceeceeeecccccc----c-ceeEEeeccC----------CceEEEeCC
Q 008510           73 VWDAKFLENGDIVTAC--SDGVTRIWTVHSDKVADSLELEAYASE----L-SQYKLCRKKV----------GGLKLEDLP  135 (563)
Q Consensus        73 V~~v~~~p~g~i~sgs--~Dg~Irvwd~~~~~~~~~~~~~~~~~~----v-~~~~~~~~~~----------~~i~~~d~~  135 (563)
                      ...+++ .++++..+.  .++.|.+||..+++.............    . ....+....+          +.|.++|..
T Consensus       133 p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~  211 (328)
T 3dsm_A          133 TEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAE  211 (328)
T ss_dssp             CCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETT
T ss_pred             cceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECC
Confidence            667777 556655444  489999999999875543332211111    1 2333333332          678888887


Q ss_pred             CCcee
Q 008510          136 GLEAL  140 (563)
Q Consensus       136 ~~~~l  140 (563)
                      +.++.
T Consensus       212 t~~v~  216 (328)
T 3dsm_A          212 TFTVE  216 (328)
T ss_dssp             TTEEE
T ss_pred             CCeEE
Confidence            66654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.30  E-value=5.5e-06  Score=92.10  Aligned_cols=98  Identities=8%  Similarity=-0.007  Sum_probs=68.3

Q ss_pred             CCCEEE-----EEECCCcEEEEcC-CCceeEEEecCCCcE--EEEEEcCCC-eEEEEeCCCc-------------EEEEc
Q 008510            2 PGVGII-----SASHDCTIRLWAL-TGQVLMEMVGHTAIV--YSIDSHASG-LIVSGSEDRF-------------AKIWK   59 (563)
Q Consensus         2 ~g~~l~-----s~s~DgtIrlWd~-~g~~i~~l~gH~~~V--~~v~~~p~g-~l~s~s~D~t-------------vriWd   59 (563)
                      ||++++     +|+.+.+|++||+ +|+.+.  ..+...+  .+++|+||| .|+.++.|.+             |++|+
T Consensus       131 DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~  208 (695)
T 2bkl_A          131 DGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHT  208 (695)
T ss_dssp             TSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEE
T ss_pred             CCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEE
Confidence            578887     5555678999999 666541  1122222  689999999 8888888877             99999


Q ss_pred             --CCce--eEEEe---cCCcEEEEEEccCCc-EEEEeCCC----cEEEEEcCCC
Q 008510           60 --DGVC--VQSIE---HPGCVWDAKFLENGD-IVTACSDG----VTRIWTVHSD  101 (563)
Q Consensus        60 --~~~~--~~~l~---h~~~V~~v~~~p~g~-i~sgs~Dg----~Irvwd~~~~  101 (563)
                        ++..  ...+.   ++..+.++.|+|+|+ |+.++.++    .|++|+..++
T Consensus       209 l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~  262 (695)
T 2bkl_A          209 LGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK  262 (695)
T ss_dssp             TTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS
T ss_pred             CCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC
Confidence              4431  22232   456899999999999 77766665    6677765444

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.28  E-value=0.00018  Score=71.49  Aligned_cols=134  Identities=19%  Similarity=0.105  Sum_probs=85.8

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCC----CcEEEEc-CCceeE-EEe---cC
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSED----RFAKIWK-DGVCVQ-SIE---HP   70 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D----~tvriWd-~~~~~~-~l~---h~   70 (563)
                      +|+.++++..++.|.+||. +++.......+...+.+++++|+| .++++..+    +.|.+|| .+..+. .+.   +.
T Consensus        55 ~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~  134 (333)
T 2dg1_A           55 QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTA  134 (333)
T ss_dssp             TSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSC
T ss_pred             CCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccC
Confidence            4677778888999999999 566554444677889999999999 66666666    6899999 443333 333   33


Q ss_pred             CcEEEEEEccCCcEEEEeC-------CCcEEEEEcCCCceeceee-e---cccccccc-e-eEEeeccCCceEEEeCC
Q 008510           71 GCVWDAKFLENGDIVTACS-------DGVTRIWTVHSDKVADSLE-L---EAYASELS-Q-YKLCRKKVGGLKLEDLP  135 (563)
Q Consensus        71 ~~V~~v~~~p~g~i~sgs~-------Dg~Irvwd~~~~~~~~~~~-~---~~~~~~v~-~-~~~~~~~~~~i~~~d~~  135 (563)
                      ..++++++.|+|++..++.       .+.|..||..+++...... .   ....-... . ..++....+.|.+||..
T Consensus       135 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~  212 (333)
T 2dg1_A          135 YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALE  212 (333)
T ss_dssp             CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             CcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEec
Confidence            4799999999999555544       2456666665544221110 0   01100111 2 33444556788888884

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.28  E-value=2.2e-07  Score=95.15  Aligned_cols=136  Identities=10%  Similarity=0.064  Sum_probs=74.3

Q ss_pred             CCCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecC--CcEE
Q 008510            1 MPGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHP--GCVW   74 (563)
Q Consensus         1 ~~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~--~~V~   74 (563)
                      ++++.+++++.||.|+.||. +|+.+.++..  +.+.+..+..++ .+++++.|+.|+.||  +++.+..+...  ..+.
T Consensus         7 v~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~   84 (369)
T 2hz6_A            7 LPETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ   84 (369)
T ss_dssp             -CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred             eeCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence            36789999999999999998 9999998886  455555556677 777788999999999  78877666521  1111


Q ss_pred             E-EEEccCCcEEEEeCCCcEEEEEcCCCceeceeeeccc--ccccceeEEeeccCCceEEEeCCCCc
Q 008510           75 D-AKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAY--ASELSQYKLCRKKVGGLKLEDLPGLE  138 (563)
Q Consensus        75 ~-v~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~i~~~d~~~~~  138 (563)
                      + ..+..++.+++|+.|+.|+.||.++++..-.......  ........+.+..++.+..||..+++
T Consensus        85 ~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~~~~~p~~~~v~~~~~dg~v~a~d~~tG~  151 (369)
T 2hz6_A           85 ASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFADSLSPSTSLLYLGRTEYTITMYDTKTRE  151 (369)
T ss_dssp             TCSCC-----CCCCEEEEEEEEECCC----------------------EEEEEEEEEEECCCSSSSS
T ss_pred             cCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCcccccccCCEEEEEecCCEEEEEECCCCC
Confidence            1 1111344588888999999999999874322211110  00012333344445566666655443

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.24  E-value=1.7e-05  Score=88.30  Aligned_cols=98  Identities=9%  Similarity=0.074  Sum_probs=70.9

Q ss_pred             CCCEEEEEECCC-----cEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCc----------------EEEE
Q 008510            2 PGVGIISASHDC-----TIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRF----------------AKIW   58 (563)
Q Consensus         2 ~g~~l~s~s~Dg-----tIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~t----------------vriW   58 (563)
                      ||++++.++.++     +|++||+ +|+.+.....+. .+.+++|+||| .|+.++.|+.                |++|
T Consensus       135 Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~-~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~  213 (710)
T 2xdw_A          135 DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV-KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYH  213 (710)
T ss_dssp             TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE-CSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEE
T ss_pred             CCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCc-ccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEE
Confidence            578888776644     8999999 677665332222 26689999999 7888888776                9999


Q ss_pred             c--CCce--eEEEe---cCCcEEEEEEccCCc-EEEEeC-----CCcEEEEEcCC
Q 008510           59 K--DGVC--VQSIE---HPGCVWDAKFLENGD-IVTACS-----DGVTRIWTVHS  100 (563)
Q Consensus        59 d--~~~~--~~~l~---h~~~V~~v~~~p~g~-i~sgs~-----Dg~Irvwd~~~  100 (563)
                      +  ++..  ...+.   |+..+..++|+|||+ |+.++.     +..|++||+.+
T Consensus       214 ~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~  268 (710)
T 2xdw_A          214 VLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQ  268 (710)
T ss_dssp             ETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred             ECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcc
Confidence            9  4432  22223   455688999999999 666554     67899999876

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.17  E-value=8.6e-05  Score=71.28  Aligned_cols=137  Identities=7%  Similarity=-0.090  Sum_probs=84.4

Q ss_pred             CCCEEE-EEECCCcEEEEcCCCceeEEE-ecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe--cCCcEEE
Q 008510            2 PGVGII-SASHDCTIRLWALTGQVLMEM-VGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE--HPGCVWD   75 (563)
Q Consensus         2 ~g~~l~-s~s~DgtIrlWd~~g~~i~~l-~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~--h~~~V~~   75 (563)
                      +|+.++ +.+.++.|.+|+..+.....+ ..+...+.+++++++| .+++.. ++.|.+|+ .+.....+.  ....+++
T Consensus        34 ~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~  112 (270)
T 1rwi_B           34 AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEG  112 (270)
T ss_dssp             TCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEE
T ss_pred             CCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcc
Confidence            366666 446788999999843322222 2344567899999998 555555 88999999 665555554  2257999


Q ss_pred             EEEccCCc-EEEEeCCCcEEEEEcCCCceeceee-----ecccc-cccceeEEeeccCCceEEEeCCCCce
Q 008510           76 AKFLENGD-IVTACSDGVTRIWTVHSDKVADSLE-----LEAYA-SELSQYKLCRKKVGGLKLEDLPGLEA  139 (563)
Q Consensus        76 v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~-----~~~~~-~~v~~~~~~~~~~~~i~~~d~~~~~~  139 (563)
                      +++.|+|+ +++...++.|.+|+..+........     ..... ..-....++....+.|..||..+...
T Consensus       113 i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~  183 (270)
T 1rwi_B          113 LAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ  183 (270)
T ss_dssp             EEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred             eEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce
Confidence            99999999 4555667899999866544221100     00110 01123444445567888888776544

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.16  E-value=5.7e-05  Score=75.18  Aligned_cols=96  Identities=13%  Similarity=0.090  Sum_probs=74.3

Q ss_pred             EEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEEEccC
Q 008510            6 IISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLEN   81 (563)
Q Consensus         6 l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~~~p~   81 (563)
                      +++.+.+++++.|  .++....+.+|...+.+++|+|+| .++++..++.|.+||  +++...... +...+.+++++|+
T Consensus        20 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~d   97 (333)
T 2dg1_A           20 AVPIISESELQTI--TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKD   97 (333)
T ss_dssp             SSCCCCGGGSCEE--ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTT
T ss_pred             eeEEeecccCccc--ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCC
Confidence            3445678888999  566777888888889999999999 677888899999999  455444442 5668999999999


Q ss_pred             CcE-EEEeCC----CcEEEEEcCCCce
Q 008510           82 GDI-VTACSD----GVTRIWTVHSDKV  103 (563)
Q Consensus        82 g~i-~sgs~D----g~Irvwd~~~~~~  103 (563)
                      |++ ++...+    +.|.+||..+++.
T Consensus        98 g~l~v~~~~~~~~~~~i~~~d~~~~~~  124 (333)
T 2dg1_A           98 GRLFVCYLGDFKSTGGIFAATENGDNL  124 (333)
T ss_dssp             SCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred             CcEEEEeCCCCCCCceEEEEeCCCCEE
Confidence            995 444444    5899999987763

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.14  E-value=0.00024  Score=70.94  Aligned_cols=160  Identities=11%  Similarity=-0.032  Sum_probs=104.8

Q ss_pred             CCcEEEEcC-CCceeEEEe----c--CCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEEEccCC
Q 008510           12 DCTIRLWAL-TGQVLMEMV----G--HTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKFLENG   82 (563)
Q Consensus        12 DgtIrlWd~-~g~~i~~l~----g--H~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~~~p~g   82 (563)
                      +++|.+||. +++....+.    +  ......++.+..+..+++...+++|.+||  +++.+.++......+.++++++|
T Consensus        16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g   95 (328)
T 3dsm_A           16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDE   95 (328)
T ss_dssp             CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETT
T ss_pred             CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCC
Confidence            899999999 677655441    1  22456778875433666667789999999  78888888766689999999998


Q ss_pred             cEEEEe-CCCcEEEEEcCCCceeceeeecc------cccc---cc-eeEEeec-cCCceEEEeCCCCceeeec-------
Q 008510           83 DIVTAC-SDGVTRIWTVHSDKVADSLELEA------YASE---LS-QYKLCRK-KVGGLKLEDLPGLEALQIP-------  143 (563)
Q Consensus        83 ~i~sgs-~Dg~Irvwd~~~~~~~~~~~~~~------~~~~---v~-~~~~~~~-~~~~i~~~d~~~~~~l~~~-------  143 (563)
                      ++..+. .++.|.+||..+++.........      ....   .. ...++.. .++.|.++|..+.+.....       
T Consensus        96 ~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~  175 (328)
T 3dsm_A           96 KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPT  175 (328)
T ss_dssp             EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBC
T ss_pred             eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCcc
Confidence            855444 89999999999987554333322      1111   11 2223333 3678999998876544321       


Q ss_pred             ---ccCCCeEEEEecCC---------CeEEEEEecccceE
Q 008510          144 ---GTNAGQTKVVREGD---------NGVAYSWDMKEQKW  171 (563)
Q Consensus       144 ---g~~dg~~~l~~~~~---------~~~~~~wd~~~~~w  171 (563)
                         ..++|.+.+...++         ...++.+|..++..
T Consensus       176 ~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v  215 (328)
T 3dsm_A          176 SLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTV  215 (328)
T ss_dssp             CCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEE
T ss_pred             ceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeE
Confidence               23566654444332         24577788766653

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.14  E-value=3.7e-05  Score=78.14  Aligned_cols=101  Identities=4%  Similarity=-0.150  Sum_probs=71.9

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEE-------------------EEEcCCC-eEEEE-----eCCCcE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYS-------------------IDSHASG-LIVSG-----SEDRFA   55 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~-------------------v~~~p~g-~l~s~-----s~D~tv   55 (563)
                      ||++|+.++.++.|++|++ +++.......+......                   +.++|++ .++.+     ..+..|
T Consensus        91 dg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l  170 (396)
T 3c5m_A           91 DERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRL  170 (396)
T ss_dssp             TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEE
T ss_pred             CCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceE
Confidence            5789999999999999999 66666556656654444                   3557776 33332     456789


Q ss_pred             EEEc--CCceeEEEecCCcEEEEEEcc-CCc-EEEEeCC------CcEEEEEcCCCc
Q 008510           56 KIWK--DGVCVQSIEHPGCVWDAKFLE-NGD-IVTACSD------GVTRIWTVHSDK  102 (563)
Q Consensus        56 riWd--~~~~~~~l~h~~~V~~v~~~p-~g~-i~sgs~D------g~Irvwd~~~~~  102 (563)
                      .+||  +++......+...+..+.|+| +|. |+..+.+      ..|.+||...++
T Consensus       171 ~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~  227 (396)
T 3c5m_A          171 IKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN  227 (396)
T ss_dssp             EEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC
T ss_pred             EEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc
Confidence            9999  555554445777899999999 777 7665543      468888987654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.12  E-value=7.4e-05  Score=74.68  Aligned_cols=82  Identities=10%  Similarity=-0.007  Sum_probs=56.6

Q ss_pred             CCCEEEEEE---------CCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCC---Cc--EEEEc--CCce
Q 008510            2 PGVGIISAS---------HDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSED---RF--AKIWK--DGVC   63 (563)
Q Consensus         2 ~g~~l~s~s---------~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D---~t--vriWd--~~~~   63 (563)
                      ||++++...         .++.|.+|++ +++. ..+    ..+.+++|+||| .++.++.+   +.  |.+|+  +++.
T Consensus        23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~   97 (347)
T 2gop_A           23 KGELVAYVLTKANLKDNKYENTIVIENLKNNAR-RFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSS   97 (347)
T ss_dssp             ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE-EEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEE
T ss_pred             CCcEEEEEEeecCcccCCccceEEEEeCCCCce-EEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCce
Confidence            466666542         3678999999 4543 444    567899999999 77766654   33  67777  4454


Q ss_pred             eEEEecCCcEEEEEEccCCc-EEEEeC
Q 008510           64 VQSIEHPGCVWDAKFLENGD-IVTACS   89 (563)
Q Consensus        64 ~~~l~h~~~V~~v~~~p~g~-i~sgs~   89 (563)
                      .+...++. +.+++|+|+|+ |+.++.
T Consensus        98 ~~l~~~~~-~~~~~wspdg~~l~~~~~  123 (347)
T 2gop_A           98 KKILEAKN-IRSLEWNEDSRKLLIVGF  123 (347)
T ss_dssp             EEEEEESE-EEEEEECTTSSEEEEEEE
T ss_pred             EEEEcCCC-ccceeECCCCCEEEEEEc
Confidence            44444555 99999999998 777664

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.08  E-value=8.1e-05  Score=72.67  Aligned_cols=103  Identities=19%  Similarity=0.278  Sum_probs=83.2

Q ss_pred             CCCEEEEEEC-CCcEEEEcCCCceeEEEe------cCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEecCCc
Q 008510            2 PGVGIISASH-DCTIRLWALTGQVLMEMV------GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIEHPGC   72 (563)
Q Consensus         2 ~g~~l~s~s~-DgtIrlWd~~g~~i~~l~------gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~h~~~   72 (563)
                      +|+.+++.+. ++.|..++.+|+.+.++.      ++......+++.++| .+++...++.|..|| .|+.+.++..+..
T Consensus        87 dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~~w~~~~~~~  166 (276)
T 3no2_A           87 DGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLNSVKLSGT  166 (276)
T ss_dssp             TSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTSCEEEEEECSSC
T ss_pred             CCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCCCCEEEEEECCCC
Confidence            5788888887 777777788899888775      222345567788898 889999999999999 9999999986667


Q ss_pred             EEEEEEccCCc-EEEEeCCCcEEEEEcCCCcee
Q 008510           73 VWDAKFLENGD-IVTACSDGVTRIWTVHSDKVA  104 (563)
Q Consensus        73 V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~  104 (563)
                      .+++...++|+ +++++.++.|..||..+++..
T Consensus       167 ~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~  199 (276)
T 3no2_A          167 PFSSAFLDNGDCLVACGDAHCFVQLNLESNRIV  199 (276)
T ss_dssp             CCEEEECTTSCEEEECBTTSEEEEECTTTCCEE
T ss_pred             ccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEE
Confidence            77888999999 666777778999999988844

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.07  E-value=6.6e-05  Score=73.54  Aligned_cols=83  Identities=16%  Similarity=0.107  Sum_probs=64.0

Q ss_pred             CC-EEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-c----CCcE
Q 008510            3 GV-GIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-H----PGCV   73 (563)
Q Consensus         3 g~-~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h----~~~V   73 (563)
                      |+ .++++..++.|..|+..+. ...+..+...+.+++++|+| .+++...++.|.+||  +++...... .    ...+
T Consensus        39 g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~  117 (296)
T 3e5z_A           39 RSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSP  117 (296)
T ss_dssp             GTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCC
T ss_pred             CCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCC
Confidence            55 6888888999999999655 77888888899999999999 666666678999999  565443332 1    1256


Q ss_pred             EEEEEccCCcE-EE
Q 008510           74 WDAKFLENGDI-VT   86 (563)
Q Consensus        74 ~~v~~~p~g~i-~s   86 (563)
                      ..+++.|+|++ ++
T Consensus       118 ~~i~~d~~G~l~vt  131 (296)
T 3e5z_A          118 NDVCLAPDGSLWFS  131 (296)
T ss_dssp             CCEEECTTSCEEEE
T ss_pred             CCEEECCCCCEEEE
Confidence            78999999994 44

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=97.98  E-value=0.00019  Score=73.31  Aligned_cols=128  Identities=12%  Similarity=-0.023  Sum_probs=85.3

Q ss_pred             CCEEEEEECCCcEEEEcC-CC-----------ceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEE
Q 008510            3 GVGIISASHDCTIRLWAL-TG-----------QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSI   67 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g-----------~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l   67 (563)
                      ...+++|+.|+ +++|++ +.           +.... ..+.. |+.++|  ++ .++.+ .++.|++||  +......+
T Consensus        49 ~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~-~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~  122 (388)
T 1xip_A           49 KSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWE-KEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTV  122 (388)
T ss_dssp             TTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEE-EECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEE
T ss_pred             CCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEE-eeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCcc
Confidence            46788999885 667986 22           22222 34677 999999  66 77777 889999999  33333444


Q ss_pred             e-cCCcEEEEEEccCCcEEEEeCCCcEEEEEcCCCceece-eeecccccccceeEEeeccCCceEEEeCCCCc
Q 008510           68 E-HPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADS-LELEAYASELSQYKLCRKKVGGLKLEDLPGLE  138 (563)
Q Consensus        68 ~-h~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~  138 (563)
                      . |...+.++.+.+. .++++..||.+.+||+.++..... ..+.++.-+..+ ...+..+|.+++|+..+.+
T Consensus       123 ~~~~~~v~~i~~~~p-~~av~~~dG~L~v~dl~~~~~~~~~~~Vs~v~WSpkG-~~vg~~dg~i~~~~~~~~~  193 (388)
T 1xip_A          123 TSFEKPVFQLKNVNN-TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQ-LAVLLKDRSFQSFAWRNGE  193 (388)
T ss_dssp             EECSSCEEEEEECSS-EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSE-EEEEETTSCEEEEEEETTE
T ss_pred             ceeecceeeEEecCC-CEEEEECCCCEEEEEccCCccccccCCceEEEEcCCc-eEEEEcCCcEEEEcCCCcc
Confidence            4 6677888887765 399999999999999997763221 111222222223 3346677888888766554

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=97.94  E-value=0.00013  Score=72.83  Aligned_cols=85  Identities=13%  Similarity=0.062  Sum_probs=57.7

Q ss_pred             CCCEEEEEECC---Cc--EEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCC----------------------
Q 008510            2 PGVGIISASHD---CT--IRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSED----------------------   52 (563)
Q Consensus         2 ~g~~l~s~s~D---gt--IrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D----------------------   52 (563)
                      ||++|+.++.+   +.  |.+|++ +|+...... +.. +.+++|+|+| .++.++.+                      
T Consensus        69 Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~  146 (347)
T 2gop_A           69 DGKKIAFMRANEEKKVSEIWVADLETLSSKKILE-AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGF  146 (347)
T ss_dssp             TSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEE-ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC------
T ss_pred             CCCEEEEEEeccCCCcceEEEEECCCCceEEEEc-CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCccc
Confidence            57888888765   33  777788 555544443 334 9999999999 67766532                      


Q ss_pred             -----CcEEEEc--CCceeEEEecCCcEEEEEEccCCcEE-EEeCC
Q 008510           53 -----RFAKIWK--DGVCVQSIEHPGCVWDAKFLENGDIV-TACSD   90 (563)
Q Consensus        53 -----~tvriWd--~~~~~~~l~h~~~V~~v~~~p~g~i~-sgs~D   90 (563)
                           ..|.+|+  +++.++.+..+ .+..++|+|+| ++ ++..+
T Consensus       147 ~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg-~~~~~~~~  190 (347)
T 2gop_A          147 FDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK-IVVNVPHR  190 (347)
T ss_dssp             ---CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE-EEEEEECC
T ss_pred             ccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe-EEEEEecc
Confidence                 4688888  55543555544 88899999999 54 44433

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=97.92  E-value=0.00041  Score=67.74  Aligned_cols=101  Identities=16%  Similarity=0.107  Sum_probs=68.9

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecC----CCcEEEEEEcCCC-eEEEEeC-----------------CCcEEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGH----TAIVYSIDSHASG-LIVSGSE-----------------DRFAKIW   58 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH----~~~V~~v~~~p~g-~l~s~s~-----------------D~tvriW   58 (563)
                      +|+++++.+.++.|.+||. +|+.......+    ...+++++++|+| .+++.+.                 .+.|..+
T Consensus        79 dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~  158 (296)
T 3e5z_A           79 QGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRL  158 (296)
T ss_dssp             TCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEE
T ss_pred             CCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEE
Confidence            4677776666789999999 77764433222    2346789999999 6666321                 2345555


Q ss_pred             c-CCceeEEEecCCcEEEEEEccCCc-EEEEeCCCcEEEEEcC-CCc
Q 008510           59 K-DGVCVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVH-SDK  102 (563)
Q Consensus        59 d-~~~~~~~l~h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~-~~~  102 (563)
                      + .++......+......++|+|+|+ +++.+.++.|++|++. +++
T Consensus       159 ~~~g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~  205 (296)
T 3e5z_A          159 APDGTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGE  205 (296)
T ss_dssp             CTTSCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSC
T ss_pred             CCCCCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCc
Confidence            5 544333333556789999999999 7666778999999997 444

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=97.82  E-value=0.0022  Score=65.28  Aligned_cols=133  Identities=14%  Similarity=0.084  Sum_probs=85.4

Q ss_pred             CCCEEEEEEC--CC---cEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEe----------CCCcEEEEc--CCc
Q 008510            2 PGVGIISASH--DC---TIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGS----------EDRFAKIWK--DGV   62 (563)
Q Consensus         2 ~g~~l~s~s~--Dg---tIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s----------~D~tvriWd--~~~   62 (563)
                      ++++++.+..  +.   +|.+||. +++.+.++..-...  .++++||| .+..+.          .+++|.+||  +.+
T Consensus        31 ~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~  108 (373)
T 2mad_H           31 DGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFL  108 (373)
T ss_pred             CCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCc
Confidence            3555555542  22   8899999 88888887654444  89999999 555553          367899999  677


Q ss_pred             eeEEEecC--------CcEEEEEEccCCc-EEEEeC--CCcEEEEEcCCCceece-eeeccc---ccccceeEEeeccCC
Q 008510           63 CVQSIEHP--------GCVWDAKFLENGD-IVTACS--DGVTRIWTVHSDKVADS-LELEAY---ASELSQYKLCRKKVG  127 (563)
Q Consensus        63 ~~~~l~h~--------~~V~~v~~~p~g~-i~sgs~--Dg~Irvwd~~~~~~~~~-~~~~~~---~~~v~~~~~~~~~~~  127 (563)
                      .+.++..+        ..-..++++|+|+ ++.+..  ++.|.++| .+++.... ..+...   ...-....+....++
T Consensus       109 ~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg  187 (373)
T 2mad_H          109 PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQG  187 (373)
T ss_pred             EEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEcCCC
Confidence            77777532        2356899999999 666653  57899999 98875543 332211   000011223344566


Q ss_pred             ceEEEeCCCCc
Q 008510          128 GLKLEDLPGLE  138 (563)
Q Consensus       128 ~i~~~d~~~~~  138 (563)
                      .+..+|. ...
T Consensus       188 ~~~~vd~-~g~  197 (373)
T 2mad_H          188 GLAKTDH-AGG  197 (373)
T ss_pred             CEEEEEC-CCc
Confidence            7777776 443

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=97.79  E-value=0.0015  Score=62.47  Aligned_cols=100  Identities=8%  Similarity=-0.010  Sum_probs=70.8

Q ss_pred             CCCEEEEEECCCcEEEEcCCCceeEEEec-CCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe--cCCcEEEE
Q 008510            2 PGVGIISASHDCTIRLWALTGQVLMEMVG-HTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE--HPGCVWDA   76 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~g-H~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~--h~~~V~~v   76 (563)
                      +|+.+++.. ++.|.+||.++.....+.. ....+.+++++++| .+++...++.|.+|+ .........  ....++++
T Consensus        77 ~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i  155 (270)
T 1rwi_B           77 AGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGV  155 (270)
T ss_dssp             TCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCE
T ss_pred             CCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeE
Confidence            356555555 8899999996655554442 33678999999999 677777788999999 222211122  22367899


Q ss_pred             EEccCCcE-EEEeCCCcEEEEEcCCCc
Q 008510           77 KFLENGDI-VTACSDGVTRIWTVHSDK  102 (563)
Q Consensus        77 ~~~p~g~i-~sgs~Dg~Irvwd~~~~~  102 (563)
                      ++.++|++ ++...++.|++||.....
T Consensus       156 ~~~~~g~l~v~~~~~~~i~~~~~~~~~  182 (270)
T 1rwi_B          156 AVDNSGNVYVTDTDNNRVVKLEAESNN  182 (270)
T ss_dssp             EECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred             EEeCCCCEEEEECCCCEEEEEecCCCc
Confidence            99999994 555567899999988765

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.79  E-value=0.00068  Score=75.12  Aligned_cols=100  Identities=11%  Similarity=-0.012  Sum_probs=70.0

Q ss_pred             CCCEEEEEECCCc-------------EEEEcC-CCc----eeEEEecCCCcEEEEEEcCCC-eEEEEeCCC----cEEEE
Q 008510            2 PGVGIISASHDCT-------------IRLWAL-TGQ----VLMEMVGHTAIVYSIDSHASG-LIVSGSEDR----FAKIW   58 (563)
Q Consensus         2 ~g~~l~s~s~Dgt-------------IrlWd~-~g~----~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~----tvriW   58 (563)
                      ||+.|+.++.|.+             |++|++ ++.    ++....+|...+.++.|+||| .++.++.++    .|++|
T Consensus       178 Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~  257 (695)
T 2bkl_A          178 DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWK  257 (695)
T ss_dssp             TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEE
T ss_pred             CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEE
Confidence            5789999999887             999999 554    343444566789999999999 666666555    57777


Q ss_pred             c-CCceeEEEe-cCCcEEEEEEccCCcEEEEeC----CCcEEEEEcCCCc
Q 008510           59 K-DGVCVQSIE-HPGCVWDAKFLENGDIVTACS----DGVTRIWTVHSDK  102 (563)
Q Consensus        59 d-~~~~~~~l~-h~~~V~~v~~~p~g~i~sgs~----Dg~Irvwd~~~~~  102 (563)
                      + .+.....+. +...+....+ ++|.++..+.    ++.|.+||+.++.
T Consensus       258 ~~~~~~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~  306 (695)
T 2bkl_A          258 RPGEKDFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPA  306 (695)
T ss_dssp             CTTCSSCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCS
T ss_pred             cCCCCceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCC
Confidence            7 333344454 6656666666 5666544443    5789999997764

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.78  E-value=0.00028  Score=71.55  Aligned_cols=87  Identities=7%  Similarity=-0.028  Sum_probs=61.3

Q ss_pred             EcC-CCceeEEEecCCCc-----EEEEEEcCCC-eEEEEeC-CC--cEEEEc-CCceeEEEe-cCCcE-EEEEEccCCc-
Q 008510           18 WAL-TGQVLMEMVGHTAI-----VYSIDSHASG-LIVSGSE-DR--FAKIWK-DGVCVQSIE-HPGCV-WDAKFLENGD-   83 (563)
Q Consensus        18 Wd~-~g~~i~~l~gH~~~-----V~~v~~~p~g-~l~s~s~-D~--tvriWd-~~~~~~~l~-h~~~V-~~v~~~p~g~-   83 (563)
                      +|. +|+.+..+..+...     +.+++|+|+| .++.++. ++  .+.+|+ .+.....+. +...+ ..+.|+|+|+ 
T Consensus        15 ~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~   94 (396)
T 3c5m_A           15 VDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERA   94 (396)
T ss_dssp             ECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSE
T ss_pred             ecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCE
Confidence            355 78888888766443     7788999999 6665543 33  677888 444344444 44333 3478999999 


Q ss_pred             EEEEeCCCcEEEEEcCCCcee
Q 008510           84 IVTACSDGVTRIWTVHSDKVA  104 (563)
Q Consensus        84 i~sgs~Dg~Irvwd~~~~~~~  104 (563)
                      |+.++.++.|++||+.+++..
T Consensus        95 l~~~~~~~~l~~~d~~~~~~~  115 (396)
T 3c5m_A           95 FFYVKNELNLMKVDLETLEEQ  115 (396)
T ss_dssp             EEEEETTTEEEEEETTTCCEE
T ss_pred             EEEEEcCCcEEEEECCCCCcE
Confidence            889999999999999887643

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=97.77  E-value=0.0014  Score=67.71  Aligned_cols=100  Identities=10%  Similarity=-0.009  Sum_probs=70.6

Q ss_pred             CCCEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCC--cEEEEc--CCceeEEE----e-cCC
Q 008510            2 PGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDR--FAKIWK--DGVCVQSI----E-HPG   71 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~--tvriWd--~~~~~~~l----~-h~~   71 (563)
                      +|+.+++...++.|++||..+..+.++.+...... ++|+|++ .++.+..++  .|.+|+  .+.....+    . ...
T Consensus       141 ~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~  219 (409)
T 3hrp_A          141 NNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSG  219 (409)
T ss_dssp             TTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCS
T ss_pred             CCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcC
Confidence            46667777777999999995433334433333334 9999998 777777766  688888  33334444    2 335


Q ss_pred             cEEEEEEcc-CCcEEEEeCCCcEEEEEcCCCc
Q 008510           72 CVWDAKFLE-NGDIVTACSDGVTRIWTVHSDK  102 (563)
Q Consensus        72 ~V~~v~~~p-~g~i~sgs~Dg~Irvwd~~~~~  102 (563)
                      .+++++++| +|.|..+..++.|+.||..++.
T Consensus       220 ~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~  251 (409)
T 3hrp_A          220 KIGAVALDETEEWLYFVDSNKNFGRFNVKTQE  251 (409)
T ss_dssp             CCCBCEECTTSSEEEEECTTCEEEEEETTTCC
T ss_pred             CcEEEEEeCCCCeEEEEECCCcEEEEECCCCC
Confidence            789999999 6777667778899999998765

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=97.72  E-value=0.0041  Score=67.02  Aligned_cols=138  Identities=13%  Similarity=0.029  Sum_probs=95.8

Q ss_pred             CCCEEEEEECCCcEEEEcC---CCceeEEEecCCCcEEEEEEc----CCC-e-EEEEeCCCcEEEEc--CCceeEEEe--
Q 008510            2 PGVGIISASHDCTIRLWAL---TGQVLMEMVGHTAIVYSIDSH----ASG-L-IVSGSEDRFAKIWK--DGVCVQSIE--   68 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~---~g~~i~~l~gH~~~V~~v~~~----p~g-~-l~s~s~D~tvriWd--~~~~~~~l~--   68 (563)
                      ||+++++++.|+.|.+||+   +++.+.++.... ....++|+    |+| . +++.-.+++|.|+|  +.+.++++.  
T Consensus       207 DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~  285 (567)
T 1qks_A          207 SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTR  285 (567)
T ss_dssp             TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECC
T ss_pred             CCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecc
Confidence            6889999999999999999   677888887543 45789999    698 5 45555669999999  778887775  


Q ss_pred             ---------cCC-cEEEEEEccCCc--EEEEeCCCcEEEEEcCCCceeceeeec--cc----c-cccceeE-EeeccCCc
Q 008510           69 ---------HPG-CVWDAKFLENGD--IVTACSDGVTRIWTVHSDKVADSLELE--AY----A-SELSQYK-LCRKKVGG  128 (563)
Q Consensus        69 ---------h~~-~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~~~~--~~----~-~~v~~~~-~~~~~~~~  128 (563)
                               |+. .+..+..++++.  +++...+|.|.++|..+.+......+.  .+    . ..-..+. .+....+.
T Consensus       286 ~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~  365 (567)
T 1qks_A          286 GMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNK  365 (567)
T ss_dssp             EECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTE
T ss_pred             ccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCe
Confidence                     123 678888888766  566677899999998765422211111  11    0 1112333 34456678


Q ss_pred             eEEEeCCCCcee
Q 008510          129 LKLEDLPGLEAL  140 (563)
Q Consensus       129 i~~~d~~~~~~l  140 (563)
                      |.++|..+.+..
T Consensus       366 V~ViD~~t~kl~  377 (567)
T 1qks_A          366 LVVIDTKEGKLV  377 (567)
T ss_dssp             EEEEETTTTEEE
T ss_pred             EEEEECCCCcEE
Confidence            999999877654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.67  E-value=0.0011  Score=74.00  Aligned_cols=99  Identities=11%  Similarity=0.090  Sum_probs=66.5

Q ss_pred             CCCEEEEEECC-----CcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCc--------------EEEEc--
Q 008510            2 PGVGIISASHD-----CTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRF--------------AKIWK--   59 (563)
Q Consensus         2 ~g~~l~s~s~D-----gtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~t--------------vriWd--   59 (563)
                      ||++++.++.+     .+|++||+ +|+.+.. ..+...+.+++|+||..|+.++.|+.              |++|+  
T Consensus       173 DG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lg  251 (741)
T 1yr2_A          173 DGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLG  251 (741)
T ss_dssp             TSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTTSEEEEEECCCC--------CCCCCEEEEEETT
T ss_pred             CCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECC
Confidence            67888877664     46999999 6766543 22222235789999864566666554              88888  


Q ss_pred             CCce--eEEEe---cCCcEEEEEEccCCc-EEEEeCC-----CcEEEEEcCCC
Q 008510           60 DGVC--VQSIE---HPGCVWDAKFLENGD-IVTACSD-----GVTRIWTVHSD  101 (563)
Q Consensus        60 ~~~~--~~~l~---h~~~V~~v~~~p~g~-i~sgs~D-----g~Irvwd~~~~  101 (563)
                      ++..  ...+.   ++..+.++.|+|||+ |+..+.+     ..|++||+.++
T Consensus       252 t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~  304 (741)
T 1yr2_A          252 TPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNG  304 (741)
T ss_dssp             SCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETT
T ss_pred             CCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCC
Confidence            3331  22333   334689999999998 7666644     38999999776

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.66  E-value=1.1e-05  Score=82.47  Aligned_cols=99  Identities=7%  Similarity=0.109  Sum_probs=52.1

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeEEEecCCC-cEEE-EEEcCCCeEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEE
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTA-IVYS-IDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAK   77 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~-~V~~-v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~   77 (563)
                      |..+++++.||.|+.||. +|+.+..+..+.. .+.+ ..+..++.+++++.|++++.||  +|+.+..+.....   +.
T Consensus        49 g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~---~~  125 (369)
T 2hz6_A           49 EPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA---DS  125 (369)
T ss_dssp             -CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-----CCCCEEEEEEEEECCC------------------
T ss_pred             CCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc---cc
Confidence            456777889999999999 8988777654422 1111 1111234777888899999999  7888877763332   34


Q ss_pred             EccCCc-EEEEeCCCcEEEEEcCCCcee
Q 008510           78 FLENGD-IVTACSDGVTRIWTVHSDKVA  104 (563)
Q Consensus        78 ~~p~g~-i~sgs~Dg~Irvwd~~~~~~~  104 (563)
                      ++|++. +++++.|+.|+.||.++++..
T Consensus       126 ~~p~~~~v~~~~~dg~v~a~d~~tG~~~  153 (369)
T 2hz6_A          126 LSPSTSLLYLGRTEYTITMYDTKTRELR  153 (369)
T ss_dssp             -------EEEEEEEEEEECCCSSSSSCC
T ss_pred             ccccCCEEEEEecCCEEEEEECCCCCEE
Confidence            556655 889999999999999998743

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=97.64  E-value=0.00022  Score=72.45  Aligned_cols=69  Identities=14%  Similarity=0.209  Sum_probs=59.9

Q ss_pred             CCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CC--ceeEEEe-cCCcEEEEEEccCCc
Q 008510           12 DCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DG--VCVQSIE-HPGCVWDAKFLENGD   83 (563)
Q Consensus        12 DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~--~~~~~l~-h~~~V~~v~~~p~g~   83 (563)
                      +++|.+||+ +++.+.++..|.  +++++|+|+| .+++++. ++|.+||  ++  +.+.++. +....+.++++|+|.
T Consensus       285 ~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          285 AAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             CSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             CceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            348999999 899999999887  8999999999 7777776 9999999  78  8888874 667889999999984

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.63  E-value=0.0061  Score=58.29  Aligned_cols=105  Identities=12%  Similarity=0.084  Sum_probs=75.5

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEEEc
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKFL   79 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~~~   79 (563)
                      +..+.+.+.+|.|+++|+ +|+.++++-....+--.+++..+...+..-.++.+.++|  +.+.+.++..+..-|.++  
T Consensus        65 ~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt--  142 (268)
T 3nok_A           65 GHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGWGLC--  142 (268)
T ss_dssp             TEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCCCEE--
T ss_pred             CEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCceeEEe--
Confidence            567888889999999999 898888772222233446665443555566788999999  889999998555456666  


Q ss_pred             cCCc-EEEEeCCCcEEEEEcCCCceeceeee
Q 008510           80 ENGD-IVTACSDGVTRIWTVHSDKVADSLEL  109 (563)
Q Consensus        80 p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~  109 (563)
                      ++|. ++.+..++.|.++|..+.+......+
T Consensus       143 ~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V  173 (268)
T 3nok_A          143 YWNGKLVRSDGGTMLTFHEPDGFALVGAVQV  173 (268)
T ss_dssp             EETTEEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred             cCCCEEEEECCCCEEEEEcCCCCeEEEEEEe
Confidence            4565 66555688999999999875544433

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=97.62  E-value=0.00077  Score=68.66  Aligned_cols=133  Identities=11%  Similarity=0.084  Sum_probs=90.5

Q ss_pred             CCCEEEEEEC-----CCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEe----------CCCcEEEEc--CCc
Q 008510            2 PGVGIISASH-----DCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGS----------EDRFAKIWK--DGV   62 (563)
Q Consensus         2 ~g~~l~s~s~-----DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s----------~D~tvriWd--~~~   62 (563)
                      ++++++....     +++|.+.|. +++.+.++..-..+ . ++++|+| .+..++          .+++|.+||  +.+
T Consensus        43 d~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~  120 (386)
T 3sjl_D           43 DARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL  120 (386)
T ss_dssp             CTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred             CCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCe
Confidence            3556666554     689999999 88999888754555 4 9999999 554443          467899999  788


Q ss_pred             eeEEEecC--------CcEEEEEEccCCc-EEEEeC--CCcEEEEEcCCCceeceeeecccc--ccc-ceeEEeeccCCc
Q 008510           63 CVQSIEHP--------GCVWDAKFLENGD-IVTACS--DGVTRIWTVHSDKVADSLELEAYA--SEL-SQYKLCRKKVGG  128 (563)
Q Consensus        63 ~~~~l~h~--------~~V~~v~~~p~g~-i~sgs~--Dg~Irvwd~~~~~~~~~~~~~~~~--~~v-~~~~~~~~~~~~  128 (563)
                      .+.++.-+        ..-+.++++|||+ +..+..  ++.|.++|..+++......+....  ... ....+....+|.
T Consensus       121 v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~  200 (386)
T 3sjl_D          121 PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGS  200 (386)
T ss_dssp             EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSC
T ss_pred             EEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCC
Confidence            88888632        2567899999999 655543  689999999999866555443221  001 112224445666


Q ss_pred             eEEEeCCC
Q 008510          129 LKLEDLPG  136 (563)
Q Consensus       129 i~~~d~~~  136 (563)
                      +-+.++..
T Consensus       201 ~~~v~~~~  208 (386)
T 3sjl_D          201 LAKVAFGT  208 (386)
T ss_dssp             EEEEECCS
T ss_pred             EEEEECCC
Confidence            66666654

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.62  E-value=0.0046  Score=62.48  Aligned_cols=206  Identities=11%  Similarity=0.100  Sum_probs=119.3

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEecCCcEE-----
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEHPGCVW-----   74 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~-----   74 (563)
                      +..++.++.|+.|..+|. +|+.+.....+........+. ++.++.++.|+.+..+|  +++.+........+.     
T Consensus       103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~-~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~  181 (376)
T 3q7m_A          103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS-DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGE  181 (376)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE-TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCC
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE-CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCC
Confidence            567788899999999999 899887776543322222222 45778888999999999  888887776433322     


Q ss_pred             -EEEEccCCcEEEEeCCCcEEEEEcCCCceeceeeeccc------------ccc---cceeEEeeccCCceEEEeCCCCc
Q 008510           75 -DAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAY------------ASE---LSQYKLCRKKVGGLKLEDLPGLE  138 (563)
Q Consensus        75 -~v~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~------------~~~---v~~~~~~~~~~~~i~~~d~~~~~  138 (563)
                       .... .++.++.++.++.+..+|..+++..-.......            ...   .....+....++.+..+|..+++
T Consensus       182 ~~~~~-~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~  260 (376)
T 3q7m_A          182 SAPTT-AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQ  260 (376)
T ss_dssp             CCCEE-ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCC
T ss_pred             CCcEE-ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCc
Confidence             1112 255688888899999999998875432222110            000   12334445556788888876655


Q ss_pred             eeeec--------ccCCCeEEEEecCCCeEEEEEecccce--EEEe---CcEeeCCCCCCCceeecCcccCcEEEEEcCC
Q 008510          139 ALQIP--------GTNAGQTKVVREGDNGVAYSWDMKEQK--WDKL---GEVVDGPDDGMNRPILDGIQYDYVFDVDIGD  205 (563)
Q Consensus       139 ~l~~~--------g~~dg~~~l~~~~~~~~~~~wd~~~~~--w~~~---g~v~~~~~~~~~~~~~~g~~~d~v~~vd~~d  205 (563)
                      .+-..        ...++.+ .+...+ ..++.+|..++.  |...   ........ -....+|.+...++++.++..+
T Consensus       261 ~~w~~~~~~~~~~~~~~~~l-~~~~~~-g~l~~~d~~tG~~~w~~~~~~~~~~~~~~-~~~~~l~v~~~~g~l~~~d~~t  337 (376)
T 3q7m_A          261 IMWKRELGSVNDFIVDGNRI-YLVDQN-DRVMALTIDGGVTLWTQSDLLHRLLTSPV-LYNGNLVVGDSEGYLHWINVED  337 (376)
T ss_dssp             EEEEECCCCEEEEEEETTEE-EEEETT-CCEEEEETTTCCEEEEECTTTTSCCCCCE-EETTEEEEECTTSEEEEEETTT
T ss_pred             EEeeccCCCCCCceEECCEE-EEEcCC-CeEEEEECCCCcEEEeecccCCCcccCCE-EECCEEEEEeCCCeEEEEECCC
Confidence            43221        1112222 222222 345566765554  5432   11111000 0134566666657788888888


Q ss_pred             CCeeeeec
Q 008510          206 GEPTRKLP  213 (563)
Q Consensus       206 g~~~~~~~  213 (563)
                      |+.+....
T Consensus       338 G~~~~~~~  345 (376)
T 3q7m_A          338 GRFVAQQK  345 (376)
T ss_dssp             CCEEEEEE
T ss_pred             CcEEEEEe
Confidence            87665544

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.58  E-value=0.0051  Score=62.15  Aligned_cols=208  Identities=14%  Similarity=0.108  Sum_probs=118.1

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecC---------CCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEec
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGH---------TAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEH   69 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH---------~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~h   69 (563)
                      .+..++.++.++.|..+|. +|+.+.++...         ...+.+.-...++.++.++.|+.|..+|  +++.+.....
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~  131 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV  131 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence            3567888888999999999 89988777653         2233332222345777888999999999  7888877764


Q ss_pred             CCcEEEEEEccCCcEEEEeCCCcEEEEEcCCCceeceeeeccc-------cc--ccceeEEeeccCCceEEEeCCCCcee
Q 008510           70 PGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAY-------AS--ELSQYKLCRKKVGGLKLEDLPGLEAL  140 (563)
Q Consensus        70 ~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~-------~~--~v~~~~~~~~~~~~i~~~d~~~~~~l  140 (563)
                      ...+.+.-...++.++.++.++.|..+|..+++..-.......       ..  ......+.+..++.+..+|..+++.+
T Consensus       132 ~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~  211 (376)
T 3q7m_A          132 AGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMI  211 (376)
T ss_dssp             SSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTTEEEEEETTTCCEE
T ss_pred             CCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCEEEEEECCCCcEE
Confidence            3322221122356688899999999999998874432222110       00  01233444555677887887655443


Q ss_pred             eec--cc-------------------CCCeEEEEecCCCeEEEEEecccc--eEEEe-CcEeeCCCCCCCceeecCcccC
Q 008510          141 QIP--GT-------------------NAGQTKVVREGDNGVAYSWDMKEQ--KWDKL-GEVVDGPDDGMNRPILDGIQYD  196 (563)
Q Consensus       141 ~~~--g~-------------------~dg~~~l~~~~~~~~~~~wd~~~~--~w~~~-g~v~~~~~~~~~~~~~~g~~~d  196 (563)
                      -..  ..                   .++. ..+... +..++.+|..++  .|... +.......  ....+|.+...+
T Consensus       212 w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-v~~~~~-~g~l~~~d~~tG~~~w~~~~~~~~~~~~--~~~~l~~~~~~g  287 (376)
T 3q7m_A          212 WQQRISQATGSTEIDRLSDVDTTPVVVNGV-VFALAY-NGNLTALDLRSGQIMWKRELGSVNDFIV--DGNRIYLVDQND  287 (376)
T ss_dssp             EEEECCC-----------CCCCCCEEETTE-EEEECT-TSCEEEEETTTCCEEEEECCCCEEEEEE--ETTEEEEEETTC
T ss_pred             EEEecccCCCCcccccccccCCCcEEECCE-EEEEec-CcEEEEEECCCCcEEeeccCCCCCCceE--ECCEEEEEcCCC
Confidence            211  10                   1122 222222 234456666554  35432 11111000  133455555556


Q ss_pred             cEEEEEcCCCCeeeeec
Q 008510          197 YVFDVDIGDGEPTRKLP  213 (563)
Q Consensus       197 ~v~~vd~~dg~~~~~~~  213 (563)
                      .++.++..+|+...+.+
T Consensus       288 ~l~~~d~~tG~~~w~~~  304 (376)
T 3q7m_A          288 RVMALTIDGGVTLWTQS  304 (376)
T ss_dssp             CEEEEETTTCCEEEEEC
T ss_pred             eEEEEECCCCcEEEeec
Confidence            78888887777655443

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.53  E-value=0.00085  Score=74.97  Aligned_cols=100  Identities=13%  Similarity=0.083  Sum_probs=63.7

Q ss_pred             CCCEEEEEECCCc---EEEEcC--C---CceeEEE-------ecCCCcEEEEEEcCCC-eEEEEeCC-----CcEEEEc-
Q 008510            2 PGVGIISASHDCT---IRLWAL--T---GQVLMEM-------VGHTAIVYSIDSHASG-LIVSGSED-----RFAKIWK-   59 (563)
Q Consensus         2 ~g~~l~s~s~Dgt---IrlWd~--~---g~~i~~l-------~gH~~~V~~v~~~p~g-~l~s~s~D-----~tvriWd-   59 (563)
                      +|++++...+++.   -.+|..  .   +.....+       .+|...+.+++|+||| .++.++.+     .+|++|| 
T Consensus       117 dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl  196 (741)
T 1yr2_A          117 RGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGV  196 (741)
T ss_dssp             ETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEET
T ss_pred             ECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEEC
Confidence            4677776666554   566765  3   4333332       3444568899999999 66655433     3599999 


Q ss_pred             -CCceeEEEecCCcEEEEEEccCCc-EEEEeCCCc--------------EEEEEcCCCc
Q 008510           60 -DGVCVQSIEHPGCVWDAKFLENGD-IVTACSDGV--------------TRIWTVHSDK  102 (563)
Q Consensus        60 -~~~~~~~l~h~~~V~~v~~~p~g~-i~sgs~Dg~--------------Irvwd~~~~~  102 (563)
                       +++.+....+...+..++|+|| + |+.++.|+.              |++|++.++.
T Consensus       197 ~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~  254 (741)
T 1yr2_A          197 ADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQ  254 (741)
T ss_dssp             TTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCG
T ss_pred             CCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCc
Confidence             6665443212223468899999 8 877776654              8999997765

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=97.51  E-value=0.035  Score=53.23  Aligned_cols=98  Identities=17%  Similarity=0.156  Sum_probs=71.0

Q ss_pred             CCCEEEEEECCCcEEEEcCCCceeEEEe--cCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe---cCCcEE
Q 008510            2 PGVGIISASHDCTIRLWALTGQVLMEMV--GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE---HPGCVW   74 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~--gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~---h~~~V~   74 (563)
                      +|+.+++...++.|.+||..++. ..+.  .+...+.++++.++| .+++...++.|..|+ .++ ...+.   ....+.
T Consensus        25 ~g~l~v~~~~~~~v~~~d~~~~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~~~~~~~~~~~~~  102 (299)
T 2z2n_A           25 KGKVWITQHKANMISCINLDGKI-TEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGI-IKEYTLPNPDSAPY  102 (299)
T ss_dssp             TSCEEEEETTTTEEEEECTTCCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSC-EEEEECSSTTCCEE
T ss_pred             CCCEEEEecCCCcEEEEcCCCCe-EEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCc-EEEEeCCCcCCCce
Confidence            46666666567899999987443 3332  355789999999999 666666688899999 644 34444   334799


Q ss_pred             EEEEccCCcE-EEEeCCCcEEEEEcCCCc
Q 008510           75 DAKFLENGDI-VTACSDGVTRIWTVHSDK  102 (563)
Q Consensus        75 ~v~~~p~g~i-~sgs~Dg~Irvwd~~~~~  102 (563)
                      ++++.++|++ ++...++.|.+||. +++
T Consensus       103 ~i~~~~~g~l~v~~~~~~~i~~~d~-~g~  130 (299)
T 2z2n_A          103 GITEGPNGDIWFTEMNGNRIGRITD-DGK  130 (299)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECT-TCC
T ss_pred             eeEECCCCCEEEEecCCceEEEECC-CCC
Confidence            9999999995 45556789999998 444

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=97.47  E-value=0.0042  Score=68.86  Aligned_cols=100  Identities=10%  Similarity=0.032  Sum_probs=69.9

Q ss_pred             CCCEEEEEECCCc----------------EEEEcC-CCc----eeEEEecCCCcEEEEEEcCCC-eEEEEeC-----CCc
Q 008510            2 PGVGIISASHDCT----------------IRLWAL-TGQ----VLMEMVGHTAIVYSIDSHASG-LIVSGSE-----DRF   54 (563)
Q Consensus         2 ~g~~l~s~s~Dgt----------------IrlWd~-~g~----~i~~l~gH~~~V~~v~~~p~g-~l~s~s~-----D~t   54 (563)
                      ||+.|+.++.|+.                |++|++ +++    ++.+...|...+.++.|+||| .++.++.     +..
T Consensus       181 Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~  260 (710)
T 2xdw_A          181 DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNR  260 (710)
T ss_dssp             TSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCE
T ss_pred             CCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccE
Confidence            6789999998877                999999 554    222223366778999999999 6665543     567


Q ss_pred             EEEEc--C------Cc-eeEEEe-cCCcEEEEEEccCCc-EEEEeCC----CcEEEEEcCCCc
Q 008510           55 AKIWK--D------GV-CVQSIE-HPGCVWDAKFLENGD-IVTACSD----GVTRIWTVHSDK  102 (563)
Q Consensus        55 vriWd--~------~~-~~~~l~-h~~~V~~v~~~p~g~-i~sgs~D----g~Irvwd~~~~~  102 (563)
                      |++||  +      +. ....+. +...+.. .|+|+|+ ++..+.+    +.|.+||+.++.
T Consensus       261 l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~  322 (710)
T 2xdw_A          261 LWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPE  322 (710)
T ss_dssp             EEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred             EEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence            99999  3      43 455665 5555554 4888887 6555543    369999998763

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=97.42  E-value=0.0053  Score=59.86  Aligned_cols=89  Identities=12%  Similarity=0.126  Sum_probs=60.4

Q ss_pred             CcEEEEcCCCceeEEEecCCCcEEEEEEc----CCC-e-EEEEeCCCcEEEEc-C--Cce-----eEEEe-cC-CcEEEE
Q 008510           13 CTIRLWALTGQVLMEMVGHTAIVYSIDSH----ASG-L-IVSGSEDRFAKIWK-D--GVC-----VQSIE-HP-GCVWDA   76 (563)
Q Consensus        13 gtIrlWd~~g~~i~~l~gH~~~V~~v~~~----p~g-~-l~s~s~D~tvriWd-~--~~~-----~~~l~-h~-~~V~~v   76 (563)
                      +.|..|+.+++... +..+......++++    |+| . +++...++.|.+|+ .  ++.     ...+. +. .....+
T Consensus       153 ~~l~~~~~~g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i  231 (314)
T 1pjx_A          153 GSIYCFTTDGQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGM  231 (314)
T ss_dssp             EEEEEECTTSCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEE
T ss_pred             CeEEEECCCCCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCce
Confidence            45666776665443 33344567889999    998 4 45556788999999 3  331     12222 22 568899


Q ss_pred             EEccCCcE-EEEeCCCcEEEEEcCCCc
Q 008510           77 KFLENGDI-VTACSDGVTRIWTVHSDK  102 (563)
Q Consensus        77 ~~~p~g~i-~sgs~Dg~Irvwd~~~~~  102 (563)
                      ++.++|++ ++...++.|.+||.++++
T Consensus       232 ~~d~~G~l~v~~~~~~~i~~~d~~~g~  258 (314)
T 1pjx_A          232 DFDEDNNLLVANWGSSHIEVFGPDGGQ  258 (314)
T ss_dssp             EEBTTCCEEEEEETTTEEEEECTTCBS
T ss_pred             EECCCCCEEEEEcCCCEEEEEcCCCCc
Confidence            99999994 555578899999988665

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=97.39  E-value=0.064  Score=54.35  Aligned_cols=99  Identities=10%  Similarity=0.054  Sum_probs=71.5

Q ss_pred             CCCEEEEEE----------CCCcEEEEcC-CCceeEEEecC-------CCcEEEEEEcCCC-eEEEEeC--CCcEEEEc-
Q 008510            2 PGVGIISAS----------HDCTIRLWAL-TGQVLMEMVGH-------TAIVYSIDSHASG-LIVSGSE--DRFAKIWK-   59 (563)
Q Consensus         2 ~g~~l~s~s----------~DgtIrlWd~-~g~~i~~l~gH-------~~~V~~v~~~p~g-~l~s~s~--D~tvriWd-   59 (563)
                      ||++++.+.          .+++|.+||. +++.+.++.-.       ...-..+.++|+| .++.++.  +.+|.++| 
T Consensus        76 Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD~  155 (373)
T 2mad_H           76 SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQ  155 (373)
T ss_pred             CCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEEC
Confidence            577777775          3688999999 77777766421       1234689999999 6666653  47899999 


Q ss_pred             CCceeEE-EecCCcEEEEEEccCCc--EEEEeCCCcEEEEEcCCCcee
Q 008510           60 DGVCVQS-IEHPGCVWDAKFLENGD--IVTACSDGVTRIWTVHSDKVA  104 (563)
Q Consensus        60 ~~~~~~~-l~h~~~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~  104 (563)
                      +++.+.+ +..+..   +.+.|++.  +++.+.||.+.+||. +++..
T Consensus       156 t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~  199 (373)
T 2mad_H          156 GGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAA  199 (373)
T ss_pred             CCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEE
Confidence            6677777 655443   45667664  778889999999999 77644

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.32  E-value=0.043  Score=52.36  Aligned_cols=105  Identities=15%  Similarity=0.176  Sum_probs=73.8

Q ss_pred             CCCEEEEEECCC--cEEEEcC-CCceeEEEecCCC-cEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEecCCcEEE
Q 008510            2 PGVGIISASHDC--TIRLWAL-TGQVLMEMVGHTA-IVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWD   75 (563)
Q Consensus         2 ~g~~l~s~s~Dg--tIrlWd~-~g~~i~~l~gH~~-~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~   75 (563)
                      ++..+.|+|.+|  .|+++|+ +|+.++++.-... +--.+++..+...+..-.++.+.++|  +.+.+.++..+..=|.
T Consensus        52 ~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~g  131 (262)
T 3nol_A           52 NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGWG  131 (262)
T ss_dssp             TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCC
T ss_pred             CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCceE
Confidence            456778888877  8999999 8999888765433 22345554332455556688999999  8899999986554455


Q ss_pred             EEEccCCc-EEEEeCCCcEEEEEcCCCceeceee
Q 008510           76 AKFLENGD-IVTACSDGVTRIWTVHSDKVADSLE  108 (563)
Q Consensus        76 v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~  108 (563)
                      ++  ++|. ++.+..++.|.++|..+.+......
T Consensus       132 lt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~  163 (262)
T 3nol_A          132 LT--HNDQYLIMSDGTPVLRFLDPESLTPVRTIT  163 (262)
T ss_dssp             EE--ECSSCEEECCSSSEEEEECTTTCSEEEEEE
T ss_pred             Ee--cCCCEEEEECCCCeEEEEcCCCCeEEEEEE
Confidence            55  4666 6555557889999999887554433

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.31  E-value=0.061  Score=50.75  Aligned_cols=105  Identities=15%  Similarity=0.128  Sum_probs=74.5

Q ss_pred             CCEEEEEECCC--cEEEEcC-CCceeEEEecCCC-cEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEecCCcEEEE
Q 008510            3 GVGIISASHDC--TIRLWAL-TGQVLMEMVGHTA-IVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDA   76 (563)
Q Consensus         3 g~~l~s~s~Dg--tIrlWd~-~g~~i~~l~gH~~-~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v   76 (563)
                      +..+.|++.+|  .|+.+|+ +|+.++++.-... +--.+++..+...+..-.++.+.++|  +.+.+.++..+..=|.+
T Consensus        31 ~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwgl  110 (243)
T 3mbr_X           31 GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWAL  110 (243)
T ss_dssp             TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCCEE
T ss_pred             CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEE
Confidence            45677777764  8999999 8999888764433 22345555333555567789999999  88999999966555666


Q ss_pred             EEccCCc-EEEEeCCCcEEEEEcCCCceeceeee
Q 008510           77 KFLENGD-IVTACSDGVTRIWTVHSDKVADSLEL  109 (563)
Q Consensus        77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~  109 (563)
                      +  +++. +..+..++.|.++|..+.+......+
T Consensus       111 t--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V  142 (243)
T 3mbr_X          111 T--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKV  142 (243)
T ss_dssp             E--ECSSCEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred             e--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEE
Confidence            6  4555 66656688999999999875544443

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=97.25  E-value=0.033  Score=54.23  Aligned_cols=99  Identities=3%  Similarity=-0.023  Sum_probs=61.7

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEec----CCCcEEEEEEcCCC-eEEEEeC---------CCcEEEEc---CCce
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVG----HTAIVYSIDSHASG-LIVSGSE---------DRFAKIWK---DGVC   63 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~g----H~~~V~~v~~~p~g-~l~s~s~---------D~tvriWd---~~~~   63 (563)
                      +|++ +.+. +..|.+||. +++.......    ....+++++++|+| .+++...         ...-+||.   .++.
T Consensus        64 dG~l-~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~  141 (297)
T 3g4e_A           64 SGGY-VATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV  141 (297)
T ss_dssp             TSSE-EEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE
T ss_pred             CCCE-EEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCE
Confidence            4564 4444 567999998 5554322221    12457899999999 4444322         23345555   4554


Q ss_pred             eEEEecCCcEEEEEEccCCc-E-EEEeCCCcEEEEEcC--CCc
Q 008510           64 VQSIEHPGCVWDAKFLENGD-I-VTACSDGVTRIWTVH--SDK  102 (563)
Q Consensus        64 ~~~l~h~~~V~~v~~~p~g~-i-~sgs~Dg~Irvwd~~--~~~  102 (563)
                      .....+......++|+|+|+ + ++.+.++.|.+||++  ++.
T Consensus       142 ~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~  184 (297)
T 3g4e_A          142 KKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQ  184 (297)
T ss_dssp             EEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCC
T ss_pred             EEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCc
Confidence            44334445678999999998 5 566668899999974  454

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=97.20  E-value=0.075  Score=50.84  Aligned_cols=99  Identities=12%  Similarity=0.026  Sum_probs=71.5

Q ss_pred             CCCEEEEEECCCcEEEEcCCCceeEEEe--cCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe--cCCcEEE
Q 008510            2 PGVGIISASHDCTIRLWALTGQVLMEMV--GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE--HPGCVWD   75 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~--gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~--h~~~V~~   75 (563)
                      +|+.+++...++.|..|+.+++. ..+.  .+...+.++++.++| .+++...++.|.+|+ +++......  +...+.+
T Consensus        67 ~g~l~v~~~~~~~i~~~~~~g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~  145 (299)
T 2z2n_A           67 DGEVWFTENAANKIGRITKKGII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSF  145 (299)
T ss_dssp             TSCEEEEETTTTEEEEECTTSCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEE
T ss_pred             CCCEEEeCCCCCeEEEECCCCcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCCCCEEEecCCCCCCCCce
Confidence            46666666668889999987553 3333  345678999999998 666666788999999 665443222  3347999


Q ss_pred             EEEccCCcEE-EEeCCCcEEEEEcCCCc
Q 008510           76 AKFLENGDIV-TACSDGVTRIWTVHSDK  102 (563)
Q Consensus        76 v~~~p~g~i~-sgs~Dg~Irvwd~~~~~  102 (563)
                      +++.++|++. +...++.|..||. +++
T Consensus       146 i~~~~~g~l~v~~~~~~~i~~~~~-~g~  172 (299)
T 2z2n_A          146 ITLGSDNALWFTENQNNAIGRITE-SGD  172 (299)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECT-TCC
T ss_pred             EEEcCCCCEEEEeCCCCEEEEEcC-CCc
Confidence            9999999954 4445689999998 555

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=97.20  E-value=0.034  Score=53.98  Aligned_cols=98  Identities=9%  Similarity=-0.017  Sum_probs=63.2

Q ss_pred             EEEEEECCCcEEEEcCCCceeEE-Eec----CCCcEEEEEEcCCC-eEEEEeCC---------------CcEEEEc-CCc
Q 008510            5 GIISASHDCTIRLWALTGQVLME-MVG----HTAIVYSIDSHASG-LIVSGSED---------------RFAKIWK-DGV   62 (563)
Q Consensus         5 ~l~s~s~DgtIrlWd~~g~~i~~-l~g----H~~~V~~v~~~p~g-~l~s~s~D---------------~tvriWd-~~~   62 (563)
                      .+..++.+..|.+||.+|+.... ...    +...+++++++++| .+++...+               +.|..|+ .++
T Consensus        84 ~l~v~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~  163 (314)
T 1pjx_A           84 QLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQ  163 (314)
T ss_dssp             EEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSC
T ss_pred             cEEEEECCCCEEEEeCCCCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCCC
Confidence            34444445578899987554322 211    12458899999999 56655544               4566677 655


Q ss_pred             eeEEEecCCcEEEEEEc----cCCc-E-EEEeCCCcEEEEEcC-CCc
Q 008510           63 CVQSIEHPGCVWDAKFL----ENGD-I-VTACSDGVTRIWTVH-SDK  102 (563)
Q Consensus        63 ~~~~l~h~~~V~~v~~~----p~g~-i-~sgs~Dg~Irvwd~~-~~~  102 (563)
                      ......+......++++    |+|+ + ++...++.|++||.+ +++
T Consensus       164 ~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~  210 (314)
T 1pjx_A          164 MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAK  210 (314)
T ss_dssp             EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTE
T ss_pred             EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCc
Confidence            44434444567889999    9996 5 444567899999986 443

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.16  E-value=0.012  Score=60.70  Aligned_cols=123  Identities=11%  Similarity=0.107  Sum_probs=83.3

Q ss_pred             CcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEe----------CCCcEEEEc--CCceeEEEecC--------
Q 008510           13 CTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGS----------EDRFAKIWK--DGVCVQSIEHP--------   70 (563)
Q Consensus        13 gtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s----------~D~tvriWd--~~~~~~~l~h~--------   70 (563)
                      ++|.+.|. +++.+.++.--..+  .++++||| .+..+.          .+++|.++|  +.+.+.++..+        
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g  176 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVG  176 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBS
T ss_pred             CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccC
Confidence            69999999 88999888754455  89999999 444443          467899999  78888887633        


Q ss_pred             CcEEEEEEccCCc-EEEEeC--CCcEEEEEcCCCceeceeeecccc---cccceeEEeeccCCceEEEeCCCC
Q 008510           71 GCVWDAKFLENGD-IVTACS--DGVTRIWTVHSDKVADSLELEAYA---SELSQYKLCRKKVGGLKLEDLPGL  137 (563)
Q Consensus        71 ~~V~~v~~~p~g~-i~sgs~--Dg~Irvwd~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~i~~~d~~~~  137 (563)
                      ..-..++++|||+ ++.+..  ++.|.+.|..+++......+....   ..-....+....+|.+.+.+....
T Consensus       177 ~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~  249 (426)
T 3c75_H          177 TYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADG  249 (426)
T ss_dssp             CCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTT
T ss_pred             CCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCC
Confidence            2456789999998 665553  688999999999866554443210   000122233445566666665433

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=97.12  E-value=0.013  Score=59.63  Aligned_cols=99  Identities=12%  Similarity=0.139  Sum_probs=71.5

Q ss_pred             CCCEEEEEE----------CCCcEEEEcC-CCceeEEEecCC-------CcEEEEEEcCCC-eEEEEeC--CCcEEEEc-
Q 008510            2 PGVGIISAS----------HDCTIRLWAL-TGQVLMEMVGHT-------AIVYSIDSHASG-LIVSGSE--DRFAKIWK-   59 (563)
Q Consensus         2 ~g~~l~s~s----------~DgtIrlWd~-~g~~i~~l~gH~-------~~V~~v~~~p~g-~l~s~s~--D~tvriWd-   59 (563)
                      ||++++.++          .+++|.+||. +++.+.++.-..       ..-..+.++||| .+..+..  +++|.++| 
T Consensus        88 DG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~  167 (386)
T 3sjl_D           88 DGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDL  167 (386)
T ss_dssp             TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEET
T ss_pred             CCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEEC
Confidence            566666654          4678999999 888888875221       234578999999 6555553  68999999 


Q ss_pred             -CCceeEEEecCCcEEEEEEccCC-c-EEEEeCCCcEEEEEcCC-Cce
Q 008510           60 -DGVCVQSIEHPGCVWDAKFLENG-D-IVTACSDGVTRIWTVHS-DKV  103 (563)
Q Consensus        60 -~~~~~~~l~h~~~V~~v~~~p~g-~-i~sgs~Dg~Irvwd~~~-~~~  103 (563)
                       +++.+.++.-++. +  ...|.| + +++.|.||.+-+.++.+ ++.
T Consensus       168 ~t~~vv~tI~v~g~-~--~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v  212 (386)
T 3sjl_D          168 EGKAFKRMLDVPDC-Y--HIFPTAPDTFFMHCRDGSLAKVAFGTEGTP  212 (386)
T ss_dssp             TTTEEEEEEECCSE-E--EEEEEETTEEEEEETTSCEEEEECCSSSCC
T ss_pred             CCCcEEEEEECCCc-c--eeecCCCceeEEECCCCCEEEEECCCCCeE
Confidence             8888888875542 2  233544 3 78889999999999976 553

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=97.08  E-value=0.036  Score=53.91  Aligned_cols=84  Identities=12%  Similarity=0.005  Sum_probs=57.1

Q ss_pred             CCEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc-CCceeEEEe-c----C-CcEEE
Q 008510            3 GVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK-DGVCVQSIE-H----P-GCVWD   75 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd-~~~~~~~l~-h----~-~~V~~   75 (563)
                      +..+++...++.|..||..+.....+ .+...+.+++++++|.++.+. ++.|.+|| ....+..+. .    + ..+..
T Consensus        25 ~~l~~~d~~~~~i~~~d~~~~~~~~~-~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~d  102 (297)
T 3g4e_A           25 NSLLFVDIPAKKVCRWDSFTKQVQRV-TMDAPVSSVALRQSGGYVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFND  102 (297)
T ss_dssp             TEEEEEETTTTEEEEEETTTCCEEEE-ECSSCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEE
T ss_pred             CEEEEEECCCCEEEEEECCCCcEEEE-eCCCceEEEEECCCCCEEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCC
Confidence            45677777789999999943333343 356789999999999444444 56799999 433334443 2    1 25889


Q ss_pred             EEEccCCcEEEEe
Q 008510           76 AKFLENGDIVTAC   88 (563)
Q Consensus        76 v~~~p~g~i~sgs   88 (563)
                      +++.|+|++..++
T Consensus       103 i~~d~dG~l~~~~  115 (297)
T 3g4e_A          103 GKVDPAGRYFAGT  115 (297)
T ss_dssp             EEECTTSCEEEEE
T ss_pred             EEECCCCCEEEec
Confidence            9999999954443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.07  E-value=0.014  Score=64.46  Aligned_cols=138  Identities=14%  Similarity=0.128  Sum_probs=87.8

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeEEEecC--CCcEEEEEEcC---CCeEEEEe------CCCcEEEEc--CCceeEEEe
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLMEMVGH--TAIVYSIDSHA---SGLIVSGS------EDRFAKIWK--DGVCVQSIE   68 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH--~~~V~~v~~~p---~g~l~s~s------~D~tvriWd--~~~~~~~l~   68 (563)
                      +..++.++.|+.|..+|. +|+.+.++...  ....+.+..+|   ++.++.++      .|+.|+.||  +|+.+..+.
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  200 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY  200 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence            567888999999999999 89998877642  22112222223   55444332      378999999  899887775


Q ss_pred             c-C---C---------------------------cEE-EEEEccCCc-EEEEeCCCc-------------------EEEE
Q 008510           69 H-P---G---------------------------CVW-DAKFLENGD-IVTACSDGV-------------------TRIW   96 (563)
Q Consensus        69 h-~---~---------------------------~V~-~v~~~p~g~-i~sgs~Dg~-------------------Irvw   96 (563)
                      . +   .                           .+| .+++.|++. ++.++.++.                   |..|
T Consensus       201 ~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~Al  280 (689)
T 1yiq_A          201 TVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAV  280 (689)
T ss_dssp             SSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEE
T ss_pred             ccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence            1 1   0                           122 577888666 777777653                   9999


Q ss_pred             EcCCCceeceeeecccc-------cc--c---------ceeEEeeccCCceEEEeCCCCcee
Q 008510           97 TVHSDKVADSLELEAYA-------SE--L---------SQYKLCRKKVGGLKLEDLPGLEAL  140 (563)
Q Consensus        97 d~~~~~~~~~~~~~~~~-------~~--v---------~~~~~~~~~~~~i~~~d~~~~~~l  140 (563)
                      |.++++..=......+.       ..  +         ....+....+|.+.++|..+++.+
T Consensus       281 D~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l  342 (689)
T 1yiq_A          281 NADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELL  342 (689)
T ss_dssp             ETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             EccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEe
Confidence            99999854222221110       00  0         113445667788999998777665

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=96.99  E-value=0.26  Score=46.89  Aligned_cols=99  Identities=14%  Similarity=0.059  Sum_probs=71.2

Q ss_pred             CCCEEEEEECCCcEEEEcCCCceeE-EEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe---cCCcEEE
Q 008510            2 PGVGIISASHDCTIRLWALTGQVLM-EMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE---HPGCVWD   75 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~~g~~i~-~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~---h~~~V~~   75 (563)
                      +|+.+++...++.|.+|+..++... .+..+...+.++++.++| .+++...++.|..|| .++. ..+.   ....+.+
T Consensus        30 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g~~-~~~~~~~~~~~~~~  108 (300)
T 2qc5_A           30 DGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKKGGF-TEYPLPQPDSGPYG  108 (300)
T ss_dssp             TSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCE-EEEECSSTTCCEEE
T ss_pred             CCCEEEEcCCCCeEEEECCCCceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCCCCe-EEecCCCCCCCCcc
Confidence            4666676667899999998755433 222344678999999998 666666678899999 7443 4444   2357999


Q ss_pred             EEEccCCcE-EEEeCCCcEEEEEcCCCc
Q 008510           76 AKFLENGDI-VTACSDGVTRIWTVHSDK  102 (563)
Q Consensus        76 v~~~p~g~i-~sgs~Dg~Irvwd~~~~~  102 (563)
                      +++.++|++ ++...++.|..||.. ++
T Consensus       109 i~~~~~g~l~v~~~~~~~i~~~~~~-g~  135 (300)
T 2qc5_A          109 ITEGLNGDIWFTQLNGDRIGKLTAD-GT  135 (300)
T ss_dssp             EEECSTTCEEEEETTTTEEEEECTT-SC
T ss_pred             ceECCCCCEEEEccCCCeEEEECCC-CC
Confidence            999999995 444457899999987 54

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=96.95  E-value=0.026  Score=62.10  Aligned_cols=138  Identities=12%  Similarity=0.047  Sum_probs=86.9

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeEEEecC-C----CcEEEEEEcCCCeEEEEeC------CCcEEEEc--CCceeEEEe
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLMEMVGH-T----AIVYSIDSHASGLIVSGSE------DRFAKIWK--DGVCVQSIE   68 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH-~----~~V~~v~~~p~g~l~s~s~------D~tvriWd--~~~~~~~l~   68 (563)
                      +..++.++.|+.|..+|. +|+.+.++..+ .    ..+.+--...++.++.++.      |+.|+.||  +|+.+..+.
T Consensus       128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~  207 (677)
T 1kb0_A          128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF  207 (677)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEec
Confidence            567888899999999999 89999888765 2    1222111111454444432      79999999  899888776


Q ss_pred             c-CCc-------------------------------E-EEEEEccCCc-EEEEeCCC-------------------cEEE
Q 008510           69 H-PGC-------------------------------V-WDAKFLENGD-IVTACSDG-------------------VTRI   95 (563)
Q Consensus        69 h-~~~-------------------------------V-~~v~~~p~g~-i~sgs~Dg-------------------~Irv   95 (563)
                      . +..                               + ..+++.|++. +..++.++                   .|..
T Consensus       208 ~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~A  287 (677)
T 1kb0_A          208 SVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVA  287 (677)
T ss_dssp             SSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred             cCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEE
Confidence            2 111                               1 2467888766 66666553                   5999


Q ss_pred             EEcCCCceeceeeecccc-------cc--c---------ceeEEeeccCCceEEEeCCCCcee
Q 008510           96 WTVHSDKVADSLELEAYA-------SE--L---------SQYKLCRKKVGGLKLEDLPGLEAL  140 (563)
Q Consensus        96 wd~~~~~~~~~~~~~~~~-------~~--v---------~~~~~~~~~~~~i~~~d~~~~~~l  140 (563)
                      +|.++++..=......+.       ..  +         ....+....+|.+.++|..+++.+
T Consensus       288 lD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l  350 (677)
T 1kb0_A          288 LDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFI  350 (677)
T ss_dssp             ECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             EECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEe
Confidence            999998854322221110       00  0         034455667788888888766554

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=96.94  E-value=0.015  Score=56.85  Aligned_cols=83  Identities=16%  Similarity=0.063  Sum_probs=59.4

Q ss_pred             CC-EEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEec-----CCcEE
Q 008510            3 GV-GIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIEH-----PGCVW   74 (563)
Q Consensus         3 g~-~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~h-----~~~V~   74 (563)
                      |+ .+++...++.|..|+.+|+ ...+..+...+.+++++++| .+++...++.|.+|+ +++......+     ...+.
T Consensus        56 g~~l~~~d~~~~~i~~~~~~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~  134 (305)
T 3dr2_A           56 QRTLVWSDLVGRRVLGWREDGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDADGQAHLLVGRYAGKRLNSPN  134 (305)
T ss_dssp             GTEEEEEETTTTEEEEEETTSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECEETTEECSCCC
T ss_pred             CCEEEEEECCCCEEEEEeCCCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCCCCEEEEEeccCCCccCCCC
Confidence            45 5777778899999998665 45666677889999999999 454444557899999 7553322221     12467


Q ss_pred             EEEEccCCcEEE
Q 008510           75 DAKFLENGDIVT   86 (563)
Q Consensus        75 ~v~~~p~g~i~s   86 (563)
                      ++++.|+|++..
T Consensus       135 ~i~~d~dG~l~~  146 (305)
T 3dr2_A          135 DLIVARDGAIWF  146 (305)
T ss_dssp             CEEECTTSCEEE
T ss_pred             CEEECCCCCEEE
Confidence            899999999544

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=96.94  E-value=0.053  Score=52.10  Aligned_cols=104  Identities=13%  Similarity=0.065  Sum_probs=70.8

Q ss_pred             CCEEEEEEC--CCcEEEEcC-CCceeEEEec-CCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEecC-CcEEE
Q 008510            3 GVGIISASH--DCTIRLWAL-TGQVLMEMVG-HTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEHP-GCVWD   75 (563)
Q Consensus         3 g~~l~s~s~--DgtIrlWd~-~g~~i~~l~g-H~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~h~-~~V~~   75 (563)
                      |..+++.+.  +++|++.|+ +|+.++++.- ...+...+++..+...++.-.++.+.++|  +.+.+.++..+ ..-|.
T Consensus        32 g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g~g  111 (266)
T 2iwa_A           32 DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWG  111 (266)
T ss_dssp             TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECCSSSCCE
T ss_pred             CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECCCCCeEE
Confidence            444555543  579999999 8999888752 22344456665332555666778999999  78888888744 33344


Q ss_pred             EEEccCCc-EEEEeCCCcEEEEEcCCCceeceee
Q 008510           76 AKFLENGD-IVTACSDGVTRIWTVHSDKVADSLE  108 (563)
Q Consensus        76 v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~  108 (563)
                        ++++|. ++++..++.|.++|..+.+......
T Consensus       112 --lt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~  143 (266)
T 2iwa_A          112 --LATDGKILYGSDGTSILYEIDPHTFKLIKKHN  143 (266)
T ss_dssp             --EEECSSSEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred             --EEECCCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence              445776 6555568899999999877544333

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=96.91  E-value=0.011  Score=65.34  Aligned_cols=98  Identities=12%  Similarity=0.021  Sum_probs=63.1

Q ss_pred             CCCEEEE-----EECCCcEEEEcC-CCceeEE-EecCCCcEEEEEEcCCC-eEEEEeCCCc-------------EEEEc-
Q 008510            2 PGVGIIS-----ASHDCTIRLWAL-TGQVLME-MVGHTAIVYSIDSHASG-LIVSGSEDRF-------------AKIWK-   59 (563)
Q Consensus         2 ~g~~l~s-----~s~DgtIrlWd~-~g~~i~~-l~gH~~~V~~v~~~p~g-~l~s~s~D~t-------------vriWd-   59 (563)
                      ||+++|-     |+.+.+|++||+ +|+.+.. +.+  ....+++|+ || .|+.++.|..             |++|+ 
T Consensus       139 Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~l  215 (693)
T 3iuj_A          139 DGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRL  215 (693)
T ss_dssp             TSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEET
T ss_pred             CCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEEC
Confidence            5777773     334468999999 7775543 221  112567899 98 7777777743             88998 


Q ss_pred             -CCce--eEEEec----CCcEEEEEEccCCc-E-EEEeC---CCcEEEEEcCCCc
Q 008510           60 -DGVC--VQSIEH----PGCVWDAKFLENGD-I-VTACS---DGVTRIWTVHSDK  102 (563)
Q Consensus        60 -~~~~--~~~l~h----~~~V~~v~~~p~g~-i-~sgs~---Dg~Irvwd~~~~~  102 (563)
                       ++..  ...+..    +..+.++.|+|+|+ | ++.+.   ++.|++||+.++.
T Consensus       216 gt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~  270 (693)
T 3iuj_A          216 GTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQEN  270 (693)
T ss_dssp             TSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTT
T ss_pred             CCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCC
Confidence             3321  223332    33578999999999 4 33332   3589999987763

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=96.91  E-value=0.04  Score=53.91  Aligned_cols=84  Identities=14%  Similarity=0.065  Sum_probs=41.4

Q ss_pred             EEEEcCCCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc-CCceeEEEe-cCCcEEEEEEccCCcEEEEeCCCc
Q 008510           15 IRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK-DGVCVQSIE-HPGCVWDAKFLENGDIVTACSDGV   92 (563)
Q Consensus        15 IrlWd~~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd-~~~~~~~l~-h~~~V~~v~~~p~g~i~sgs~Dg~   92 (563)
                      |..+|.+|+.+..+..+.....+..+. ++.+..++.++.+..+| .++...... +...+.++...++|.+..|+.++.
T Consensus        80 l~~~d~~g~~~~~~~~~~~~~~~~~~~-~~~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~  158 (330)
T 3hxj_A           80 VYAINPDGTEKWRFDTKKAIVSDFTIF-EDILYVTSMDGHLYAINTDGTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNY  158 (330)
T ss_dssp             EEEECCCGGGGGGSCC-----CCEEEE-TTEEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTSCEEEECTTSE
T ss_pred             EEEECCCCcEEEEEECCCCcccCceEE-CCEEEEEecCCEEEEEcCCCCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCE
Confidence            666665554443333222222222222 55555555666666666 545544444 223445555555555555666666


Q ss_pred             EEEEEcC
Q 008510           93 TRIWTVH   99 (563)
Q Consensus        93 Irvwd~~   99 (563)
                      |..||..
T Consensus       159 l~~~d~~  165 (330)
T 3hxj_A          159 LYAINPD  165 (330)
T ss_dssp             EEEECTT
T ss_pred             EEEECCC
Confidence            6666665

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=96.91  E-value=0.063  Score=55.13  Aligned_cols=100  Identities=7%  Similarity=-0.026  Sum_probs=66.6

Q ss_pred             CCCEEEEEECCC--cEEEEcC-CCceeEEE----ecCCCcEEEEEEcC-CCeEEEEeCCCcEEEEc-CCceeEEE----e
Q 008510            2 PGVGIISASHDC--TIRLWAL-TGQVLMEM----VGHTAIVYSIDSHA-SGLIVSGSEDRFAKIWK-DGVCVQSI----E   68 (563)
Q Consensus         2 ~g~~l~s~s~Dg--tIrlWd~-~g~~i~~l----~gH~~~V~~v~~~p-~g~l~s~s~D~tvriWd-~~~~~~~l----~   68 (563)
                      +|+.++.+..++  .|.+|+. .+.....+    ..+...+.+++++| +|.+..+..++.|+.|| .......+    .
T Consensus       181 ~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~  260 (409)
T 3hrp_A          181 DKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLEL  260 (409)
T ss_dssp             TSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCC
T ss_pred             CCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccc
Confidence            456778887766  6888887 34433444    22456778999999 56555577788999999 44334444    2


Q ss_pred             --cCCcE-E-EEEEccC-Cc-EEEEeCCCcEEEEEcCCC
Q 008510           69 --HPGCV-W-DAKFLEN-GD-IVTACSDGVTRIWTVHSD  101 (563)
Q Consensus        69 --h~~~V-~-~v~~~p~-g~-i~sgs~Dg~Irvwd~~~~  101 (563)
                        +...- . .++|+|+ +. .++-..++.|+.|+.+..
T Consensus       261 ~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~  299 (409)
T 3hrp_A          261 SGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE  299 (409)
T ss_dssp             CSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC
T ss_pred             cCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC
Confidence              11222 3 8999994 66 466667889999997754

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=96.86  E-value=0.16  Score=50.12  Aligned_cols=95  Identities=15%  Similarity=0.057  Sum_probs=59.0

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecC-----CCcEEEEEEcCCC-eEEEEeCC----CcEEEEc--CCceeEEEe
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGH-----TAIVYSIDSHASG-LIVSGSED----RFAKIWK--DGVCVQSIE   68 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH-----~~~V~~v~~~p~g-~l~s~s~D----~tvriWd--~~~~~~~l~   68 (563)
                      +|+++++ +.++ |.+||. +|+.. .+...     ...+++++++|+| .+++...+    +...||.  +++......
T Consensus       100 dg~l~v~-~~~g-l~~~d~~~g~~~-~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~~~~~~~  176 (326)
T 2ghs_A          100 DSKQLIA-SDDG-LFLRDTATGVLT-LHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA  176 (326)
T ss_dssp             TTEEEEE-ETTE-EEEEETTTCCEE-EEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE
T ss_pred             CCeEEEE-ECCC-EEEEECCCCcEE-EEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCcEEEeeC
Confidence            3555554 4444 899998 56543 33221     2468899999999 54443321    3455665  443322222


Q ss_pred             cCCcEEEEEEccCCc-E-EEEeCCCcEEEEEcC
Q 008510           69 HPGCVWDAKFLENGD-I-VTACSDGVTRIWTVH   99 (563)
Q Consensus        69 h~~~V~~v~~~p~g~-i-~sgs~Dg~Irvwd~~   99 (563)
                      +......++|+|+|+ + ++.+.++.|.+||.+
T Consensus       177 ~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~  209 (326)
T 2ghs_A          177 DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLD  209 (326)
T ss_dssp             EESSEEEEEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred             CCcccCCeEEcCCCCEEEEEECCCCEEEEEEcc
Confidence            334678899999997 5 444567899999986

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=96.83  E-value=0.035  Score=54.20  Aligned_cols=99  Identities=8%  Similarity=-0.028  Sum_probs=63.1

Q ss_pred             CCCEEEEEECCCcEEEEcCCCceeEEEecC-----CCcEEEEEEcCCC-eEEE----EeC-------------CCcEEEE
Q 008510            2 PGVGIISASHDCTIRLWALTGQVLMEMVGH-----TAIVYSIDSHASG-LIVS----GSE-------------DRFAKIW   58 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~gH-----~~~V~~v~~~p~g-~l~s----~s~-------------D~tvriW   58 (563)
                      +|+.+++...++.|.+|+.+|+.. .+..+     ...+.++++.|+| .++|    |..             .+.|..|
T Consensus        96 dG~l~v~~~~~~~v~~~~~~g~~~-~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~  174 (305)
T 3dr2_A           96 QQRLVHCEHGRRAITRSDADGQAH-LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRL  174 (305)
T ss_dssp             TSCEEEEETTTTEEEEECTTSCEE-EEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEE
T ss_pred             CCCEEEEECCCCEEEEECCCCCEE-EEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEE
Confidence            466555444557899999876643 23221     1346789999999 6665    322             2456666


Q ss_pred             c--CCceeEEEecCCcEEEEEEccCCc-EEEEeCC------CcEEEEEcCCCc
Q 008510           59 K--DGVCVQSIEHPGCVWDAKFLENGD-IVTACSD------GVTRIWTVHSDK  102 (563)
Q Consensus        59 d--~~~~~~~l~h~~~V~~v~~~p~g~-i~sgs~D------g~Irvwd~~~~~  102 (563)
                      +  +++..... .......++|+|+|+ ++.+..+      +.|++|++..+.
T Consensus       175 d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~  226 (305)
T 3dr2_A          175 PPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA  226 (305)
T ss_dssp             CSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE
T ss_pred             cCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC
Confidence            6  34443333 334677899999998 7666554      789999987654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=96.81  E-value=0.038  Score=54.66  Aligned_cols=83  Identities=11%  Similarity=0.038  Sum_probs=56.1

Q ss_pred             CCEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEe-c----C-CcEE
Q 008510            3 GVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIE-H----P-GCVW   74 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~-h----~-~~V~   74 (563)
                      +..+++...++.|..||..+.....+. +...+.+++++|+|.++.++.++ |.+||  +++. ..+. .    + ..+.
T Consensus        61 ~~l~~~d~~~~~i~~~d~~~~~~~~~~-~~~~v~~i~~~~dg~l~v~~~~g-l~~~d~~~g~~-~~~~~~~~~~~~~~~~  137 (326)
T 2ghs_A           61 GTAWWFNILERELHELHLASGRKTVHA-LPFMGSALAKISDSKQLIASDDG-LFLRDTATGVL-TLHAELESDLPGNRSN  137 (326)
T ss_dssp             TEEEEEEGGGTEEEEEETTTTEEEEEE-CSSCEEEEEEEETTEEEEEETTE-EEEEETTTCCE-EEEECSSTTCTTEEEE
T ss_pred             CEEEEEECCCCEEEEEECCCCcEEEEE-CCCcceEEEEeCCCeEEEEECCC-EEEEECCCCcE-EEEeeCCCCCCCCCCC
Confidence            456677777899999999444344443 45679999999999433344444 88999  4543 3333 2    1 2689


Q ss_pred             EEEEccCCcEEEEe
Q 008510           75 DAKFLENGDIVTAC   88 (563)
Q Consensus        75 ~v~~~p~g~i~sgs   88 (563)
                      ++++.|+|++..++
T Consensus       138 ~i~~d~~G~l~v~~  151 (326)
T 2ghs_A          138 DGRMHPSGALWIGT  151 (326)
T ss_dssp             EEEECTTSCEEEEE
T ss_pred             CEEECCCCCEEEEe
Confidence            99999999954444

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=96.79  E-value=0.004  Score=68.68  Aligned_cols=101  Identities=11%  Similarity=0.089  Sum_probs=75.7

Q ss_pred             CEEEEEECCCcEEEEcC-CCceeEEEecCC-C----------cE------------------------EEEEEcCCC-eE
Q 008510            4 VGIISASHDCTIRLWAL-TGQVLMEMVGHT-A----------IV------------------------YSIDSHASG-LI   46 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~-~----------~V------------------------~~v~~~p~g-~l   46 (563)
                      ..++.++.+|.+.++|. +|+.+..+.-.. .          .+                        ..++++|++ .+
T Consensus       328 ~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~  407 (677)
T 1kb0_A          328 KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLV  407 (677)
T ss_dssp             EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEE
T ss_pred             eEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEE
Confidence            57889999999999999 899887664211 1          11                        146788876 55


Q ss_pred             EEEeC-------------------------------------------CCcEEEEc--CCceeEEEecCCcEEEEEEccC
Q 008510           47 VSGSE-------------------------------------------DRFAKIWK--DGVCVQSIEHPGCVWDAKFLEN   81 (563)
Q Consensus        47 ~s~s~-------------------------------------------D~tvriWd--~~~~~~~l~h~~~V~~v~~~p~   81 (563)
                      +....                                           .++|..||  +++.+..+.+...++...+...
T Consensus       408 yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~  487 (677)
T 1kb0_A          408 YLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTA  487 (677)
T ss_dssp             EEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEET
T ss_pred             EEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeC
Confidence            44332                                           27899999  8888888887666777667766


Q ss_pred             Cc-EEEEeCCCcEEEEEcCCCcee
Q 008510           82 GD-IVTACSDGVTRIWTVHSDKVA  104 (563)
Q Consensus        82 g~-i~sgs~Dg~Irvwd~~~~~~~  104 (563)
                      |. ++.|+.||.+++||.++++..
T Consensus       488 g~~v~~g~~dg~l~a~D~~tG~~l  511 (677)
T 1kb0_A          488 GNVVFQGTADGRLVAYHAATGEKL  511 (677)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CCEEEEECCCCcEEEEECCCCcee
Confidence            66 788899999999999999844

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=96.68  E-value=0.038  Score=57.00  Aligned_cols=98  Identities=12%  Similarity=0.053  Sum_probs=72.6

Q ss_pred             EEEEEECC------CcEEEEcC-CCceeEEEec--CC-CcEEEEEEcCCC-eEEEEe-------------------CCCc
Q 008510            5 GIISASHD------CTIRLWAL-TGQVLMEMVG--HT-AIVYSIDSHASG-LIVSGS-------------------EDRF   54 (563)
Q Consensus         5 ~l~s~s~D------gtIrlWd~-~g~~i~~l~g--H~-~~V~~v~~~p~g-~l~s~s-------------------~D~t   54 (563)
                      .++++..|      |.|.+.|. +++.+.++.-  +. ..-|.+.|+|++ .++++.                   .+.+
T Consensus       150 i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~  229 (462)
T 2ece_A          150 IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNR  229 (462)
T ss_dssp             EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCE
T ss_pred             EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCE
Confidence            77777776      78999998 7899988862  22 445778899998 677664                   3689


Q ss_pred             EEEEc--CCceeEEEecC---CcEEEEEE--ccCCc-E-EEEe-----CCCcEEEEEcCCCc
Q 008510           55 AKIWK--DGVCVQSIEHP---GCVWDAKF--LENGD-I-VTAC-----SDGVTRIWTVHSDK  102 (563)
Q Consensus        55 vriWd--~~~~~~~l~h~---~~V~~v~~--~p~g~-i-~sgs-----~Dg~Irvwd~~~~~  102 (563)
                      |.+||  +++.++++...   .....+.|  +|+|+ . +++-     .+++|.+|..+.++
T Consensus       230 V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~  291 (462)
T 2ece_A          230 IHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK  291 (462)
T ss_dssp             EEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE
T ss_pred             EEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc
Confidence            99999  67778888743   24556666  99998 4 4444     67899988887654

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=96.65  E-value=0.034  Score=55.43  Aligned_cols=101  Identities=12%  Similarity=0.079  Sum_probs=69.1

Q ss_pred             CCCEEEEEE--CCCcEEEEcC-CCceeEEE-------ecCCCcEEEEEEcCCC-eEEEEeC-----CCcEEEEc--CCce
Q 008510            2 PGVGIISAS--HDCTIRLWAL-TGQVLMEM-------VGHTAIVYSIDSHASG-LIVSGSE-----DRFAKIWK--DGVC   63 (563)
Q Consensus         2 ~g~~l~s~s--~DgtIrlWd~-~g~~i~~l-------~gH~~~V~~v~~~p~g-~l~s~s~-----D~tvriWd--~~~~   63 (563)
                      +|+.|+++.  .++.++||.+ +|+.. .+       .+|...+++++++++| .+++-..     ++.|.+||  +++.
T Consensus        27 ~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~  105 (343)
T 2qe8_A           27 DGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQL  105 (343)
T ss_dssp             TSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEE
T ss_pred             CCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeE
Confidence            477888764  2344677766 66532 22       2456789999999999 4444332     57899999  5776


Q ss_pred             eEEEecC-------CcEEEEEEccC-CcE-EEEe---CCCcEEEEEcCCCce
Q 008510           64 VQSIEHP-------GCVWDAKFLEN-GDI-VTAC---SDGVTRIWTVHSDKV  103 (563)
Q Consensus        64 ~~~l~h~-------~~V~~v~~~p~-g~i-~sgs---~Dg~Irvwd~~~~~~  103 (563)
                      ++++..+       ..+..+++.++ |.+ ++..   .++.|.+||..+++.
T Consensus       106 ~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~  157 (343)
T 2qe8_A          106 SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA  157 (343)
T ss_dssp             EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE
T ss_pred             EEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE
Confidence            7777622       24689999985 454 5555   678999999988763

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=96.59  E-value=0.025  Score=58.43  Aligned_cols=98  Identities=9%  Similarity=0.059  Sum_probs=68.7

Q ss_pred             CCCEEEEEE----------CCCcEEEEcC-CCceeEEEecC-------CCcEEEEEEcCCC-eEEEEeC--CCcEEEEc-
Q 008510            2 PGVGIISAS----------HDCTIRLWAL-TGQVLMEMVGH-------TAIVYSIDSHASG-LIVSGSE--DRFAKIWK-   59 (563)
Q Consensus         2 ~g~~l~s~s----------~DgtIrlWd~-~g~~i~~l~gH-------~~~V~~v~~~p~g-~l~s~s~--D~tvriWd-   59 (563)
                      ||++++.+.          .+++|.++|. +++.++++.--       ...-+.+.++||| .+..+..  +++|.+.| 
T Consensus       128 Dgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~  207 (426)
T 3c75_H          128 DGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDL  207 (426)
T ss_dssp             TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEET
T ss_pred             CCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEEC
Confidence            466666654          4778999999 88888887521       1234678999999 6666654  57899999 


Q ss_pred             -CCceeEEEecCCcEEEEEEccCCc--EEEEeCCCcEEEEEcCCCc
Q 008510           60 -DGVCVQSIEHPGCVWDAKFLENGD--IVTACSDGVTRIWTVHSDK  102 (563)
Q Consensus        60 -~~~~~~~l~h~~~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~  102 (563)
                       +.+.+.++.-++.   ....|+|.  +++.+.||.+.+.|..+++
T Consensus       208 ~t~kvv~~I~v~g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~  250 (426)
T 3c75_H          208 EGKTFDRMLDVPDC---YHIFPASPTVFYMNCRDGSLARVDFADGE  250 (426)
T ss_dssp             TTTEEEEEEECCSE---EEEEEEETTEEEEEETTSSEEEEECCTTC
T ss_pred             CCCeEEEEEEcCCc---eeeccCCCcEEEEEcCCCCEEEEECCCCc
Confidence             7788888875443   33455543  6777778888888875554

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=96.55  E-value=0.46  Score=45.17  Aligned_cols=99  Identities=10%  Similarity=-0.008  Sum_probs=69.8

Q ss_pred             CCCEEEEEECCCcEEEEcCCCceeE-EEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe---cCCcEEE
Q 008510            2 PGVGIISASHDCTIRLWALTGQVLM-EMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE---HPGCVWD   75 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~~g~~i~-~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~---h~~~V~~   75 (563)
                      +|+.+++...++.|..||..|+... .+..+...+.++++.++| .+++...++.|..|+ .++.. .+.   ....+.+
T Consensus        72 ~g~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~-~~~~~~~~~~~~~  150 (300)
T 2qc5_A           72 LGDIWFTENGANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIY-EYDLPNKGSYPAF  150 (300)
T ss_dssp             TSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEE-EEECSSTTCCEEE
T ss_pred             CCCEEEEecCCCeEEEECCCCCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCCCCEE-EccCCCCCCCcee
Confidence            3566666666788999998765532 122244678999999998 666666678899999 75443 333   2347899


Q ss_pred             EEEccCCcEEE-EeCCCcEEEEEcCCCc
Q 008510           76 AKFLENGDIVT-ACSDGVTRIWTVHSDK  102 (563)
Q Consensus        76 v~~~p~g~i~s-gs~Dg~Irvwd~~~~~  102 (563)
                      +++.++|++.. ...++.|..||. +++
T Consensus       151 i~~d~~g~l~v~~~~~~~i~~~~~-~g~  177 (300)
T 2qc5_A          151 ITLGSDNALWFTENQNNSIGRITN-TGK  177 (300)
T ss_dssp             EEECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred             EEECCCCCEEEEecCCCeEEEECC-CCc
Confidence            99999999544 444788999998 444

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=96.53  E-value=0.026  Score=51.69  Aligned_cols=138  Identities=14%  Similarity=0.027  Sum_probs=87.2

Q ss_pred             CcchHHHHHHHHHhhcCC-CccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHH
Q 008510          418 LPANLLTGIRAVTNLFKN-SSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAAL  496 (563)
Q Consensus       418 ~~~~~ll~lR~l~N~f~~-~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~  496 (563)
                      .+..+.-++++|+|+..+ +..+..+..  ...+..+...+.+.+..+|..++.++.|++.........-.....+..++
T Consensus        67 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~  144 (210)
T 4db6_A           67 NEQILQEALWALSNIASGGNEQIQAVID--AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV  144 (210)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcCCcHHHHHHHH--CCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHH
Confidence            456678899999999854 444444443  22344455555667889999999999999863211111111223566667


Q ss_pred             HhhhhcccChhHHHHHHHHHhhhhch-hHHHHHhhhcChHHHHHHHhhcCChhHHHHHHHHHHH
Q 008510          497 EIAEEESIEVDSKYRALVAIGTLMLE-GLVKKIALDFDVGNIARVAKASKETKIAEVGADIELL  559 (563)
Q Consensus       497 ~~l~~~~~~~Ea~~R~l~AlG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ei~~l  559 (563)
                      +++.  ..+++.....+.||++|... ++........+.-..+.++....+.++++-+...+.-
T Consensus       145 ~ll~--~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~  206 (210)
T 4db6_A          145 QLLS--SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK  206 (210)
T ss_dssp             HHTT--CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred             HHHc--CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            7774  35789999999999999983 4444444444444444444445566777766665543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=96.53  E-value=0.11  Score=57.18  Aligned_cols=100  Identities=9%  Similarity=0.056  Sum_probs=65.6

Q ss_pred             CCCEEEEEECCCc-------------EEEEcC-CCc----eeEEEec-CCCcEEEEEEcCCC-e-EEEEeCC---CcEEE
Q 008510            2 PGVGIISASHDCT-------------IRLWAL-TGQ----VLMEMVG-HTAIVYSIDSHASG-L-IVSGSED---RFAKI   57 (563)
Q Consensus         2 ~g~~l~s~s~Dgt-------------IrlWd~-~g~----~i~~l~g-H~~~V~~v~~~p~g-~-l~s~s~D---~tvri   57 (563)
                      ||+.|+.++.|..             |++|++ ++.    ++....+ |...+.++.++||| . +++.+.+   ..+++
T Consensus       184 Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~  263 (693)
T 3iuj_A          184 GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYV  263 (693)
T ss_dssp             TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEE
T ss_pred             CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEE
Confidence            6788888888854             999998 432    3333344 56678899999999 4 4454433   47899


Q ss_pred             Ec--CCc-eeEEEe-cCCcEEEEEEccCCc-EE-EEeCC---CcEEEEEcCCCc
Q 008510           58 WK--DGV-CVQSIE-HPGCVWDAKFLENGD-IV-TACSD---GVTRIWTVHSDK  102 (563)
Q Consensus        58 Wd--~~~-~~~~l~-h~~~V~~v~~~p~g~-i~-sgs~D---g~Irvwd~~~~~  102 (563)
                      |+  ++. ....+. +....... ++++|. ++ ....|   +.|..+|+.++.
T Consensus       264 ~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~  316 (693)
T 3iuj_A          264 KDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPG  316 (693)
T ss_dssp             EETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred             EECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence            98  332 455565 55555555 666665 54 44333   579999998764

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=96.50  E-value=0.012  Score=55.68  Aligned_cols=147  Identities=16%  Similarity=0.061  Sum_probs=88.6

Q ss_pred             HHHHHHhhcCCCCCcchHHHHHHHHHhhcCCCccH-HHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcC
Q 008510          405 LMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSWY-SWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKK  483 (563)
Q Consensus       405 ~~~~l~~~~~~~~~~~~~ll~lR~l~N~f~~~~~~-~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~  483 (563)
                      +..++..+..  ..+..+..++++|+|+..+...+ ..+..  ..++..+...+.+.+..+|..++..+.|++.......
T Consensus        98 i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~  173 (252)
T 4db8_A           98 LPALVQLLSS--PNEQILQEALWALSNIASGGNEQIQAVID--AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI  173 (252)
T ss_dssp             HHHHHHGGGC--SCHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HHHHHHHHcC--CCHHHHHHHHHHHHHhhcCCchHHHHHHH--CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHH
Confidence            4444444433  24567789999999999988887 44443  2344555555566788999999999999985321111


Q ss_pred             CchhhhHHHHHHHHhhhhcccChhHHHHHHHHHhhhhc-hhHHHHHhhhcChHHHHHHHhhcCChhHHHHHHHHH
Q 008510          484 DEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLML-EGLVKKIALDFDVGNIARVAKASKETKIAEVGADIE  557 (563)
Q Consensus       484 ~~~~~~~l~~~~~~~l~~~~~~~Ea~~R~l~AlG~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ei~  557 (563)
                      ..-.....+..+++++.  ..+++.....+.+|++|.. .++..+.....++-..+-.+....+.++++-+..++
T Consensus       174 ~~~~~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L  246 (252)
T 4db8_A          174 QAVIDAGALPALVQLLS--SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL  246 (252)
T ss_dssp             HHHHHTTCHHHHHHGGG--CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHH
T ss_pred             HHHHHCCCHHHHHHHHC--CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHH
Confidence            10011234566677774  3588999999999999986 334333333333322332222344556666554443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=96.45  E-value=0.012  Score=59.65  Aligned_cols=95  Identities=12%  Similarity=0.013  Sum_probs=72.0

Q ss_pred             CEEEEEECCC----cEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEe----------CCCcEEEEc--CCceeE
Q 008510            4 VGIISASHDC----TIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGS----------EDRFAKIWK--DGVCVQ   65 (563)
Q Consensus         4 ~~l~s~s~Dg----tIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s----------~D~tvriWd--~~~~~~   65 (563)
                      +.+++-..++    +|.+.|. +++.+.++..-..+  .+.++||| .+..+.          .+++|.+||  +++.+.
T Consensus        33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~  110 (368)
T 1mda_H           33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIA  110 (368)
T ss_dssp             EEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEE
T ss_pred             eEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEE
Confidence            4556665555    7889999 89999998754555  79999999 555543          478999999  889999


Q ss_pred             EEecC--------CcEEEEEEccCCc-EEEEeC--CCcEEE--EEcCC
Q 008510           66 SIEHP--------GCVWDAKFLENGD-IVTACS--DGVTRI--WTVHS  100 (563)
Q Consensus        66 ~l~h~--------~~V~~v~~~p~g~-i~sgs~--Dg~Irv--wd~~~  100 (563)
                      ++..+        .....++++|||+ ++++..  ++.|.+  +|..+
T Consensus       111 ~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t  158 (368)
T 1mda_H          111 DIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             EEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred             EEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence            98733        2467899999998 666653  467888  99876

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=96.43  E-value=0.055  Score=52.87  Aligned_cols=97  Identities=15%  Similarity=0.074  Sum_probs=72.2

Q ss_pred             CCEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc-CCceeEEEe-cCCcEEEEEEcc
Q 008510            3 GVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK-DGVCVQSIE-HPGCVWDAKFLE   80 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd-~~~~~~~l~-h~~~V~~v~~~p   80 (563)
                      +..+..++.++.|..+|..|+....+..+...+.++...++|.+..++.++.+..+| .++.+..+. ....+.++...+
T Consensus       107 ~~~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~d~  186 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTDGTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPDGTEKWRFKTNDAITSAASIGK  186 (330)
T ss_dssp             TTEEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECT
T ss_pred             CCEEEEEecCCEEEEEcCCCCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCCCCEeEEEecCCCceeeeEEcC
Confidence            345677888888888888787777777777778888888888666678888888888 766666666 334677777777


Q ss_pred             CCcEEEEeCCCcEEEEEcCCCc
Q 008510           81 NGDIVTACSDGVTRIWTVHSDK  102 (563)
Q Consensus        81 ~g~i~sgs~Dg~Irvwd~~~~~  102 (563)
                      +|.+..++  +.+..|| .+++
T Consensus       187 ~g~l~v~t--~~l~~~d-~~g~  205 (330)
T 3hxj_A          187 DGTIYFGS--DKVYAIN-PDGT  205 (330)
T ss_dssp             TCCEEEES--SSEEEEC-TTSC
T ss_pred             CCEEEEEe--CEEEEEC-CCCc
Confidence            77766666  7778888 4543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=96.38  E-value=0.066  Score=55.18  Aligned_cols=98  Identities=8%  Similarity=0.067  Sum_probs=69.7

Q ss_pred             EEEEEECCCcEEEEcC-CC----ceeEEEe------cC-CCcEEEEEEcCCCeEEEEeCC------CcEEEEc--CCcee
Q 008510            5 GIISASHDCTIRLWAL-TG----QVLMEMV------GH-TAIVYSIDSHASGLIVSGSED------RFAKIWK--DGVCV   64 (563)
Q Consensus         5 ~l~s~s~DgtIrlWd~-~g----~~i~~l~------gH-~~~V~~v~~~p~g~l~s~s~D------~tvriWd--~~~~~   64 (563)
                      .+++|..+++|.+.|+ +.    +.+++++      .+ ...-..+.+.|+|.++++..+      +.+.+.|  +.+.+
T Consensus        98 l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~v~  177 (462)
T 2ece_A           98 LIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHYSFEPL  177 (462)
T ss_dssp             EEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTTTCCEE
T ss_pred             EEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCeEE
Confidence            4667778899999998 33    5666663      11 124466788899955566555      7899999  68888


Q ss_pred             EEEe---cC-CcEEEEEEccCCc-EEEEe-------------------CCCcEEEEEcCCCc
Q 008510           65 QSIE---HP-GCVWDAKFLENGD-IVTAC-------------------SDGVTRIWTVHSDK  102 (563)
Q Consensus        65 ~~l~---h~-~~V~~v~~~p~g~-i~sgs-------------------~Dg~Irvwd~~~~~  102 (563)
                      .++.   .+ ..-+.+-|+|+++ +++..                   .+.+|.+||+.+++
T Consensus       178 ~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k  239 (462)
T 2ece_A          178 GKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK  239 (462)
T ss_dssp             EECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE
T ss_pred             EEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc
Confidence            8886   22 2345677899999 55543                   37899999999876

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=96.09  E-value=0.51  Score=45.14  Aligned_cols=119  Identities=11%  Similarity=-0.002  Sum_probs=75.3

Q ss_pred             CceeEEEecCC--CcEEEEEEcCCC-eEEEEeC--CCcEEEEc--CCceeEEEecCC--cEEEEEEccCCcE-EEEeCCC
Q 008510           22 GQVLMEMVGHT--AIVYSIDSHASG-LIVSGSE--DRFAKIWK--DGVCVQSIEHPG--CVWDAKFLENGDI-VTACSDG   91 (563)
Q Consensus        22 g~~i~~l~gH~--~~V~~v~~~p~g-~l~s~s~--D~tvriWd--~~~~~~~l~h~~--~V~~v~~~p~g~i-~sgs~Dg   91 (563)
                      .+.+.++. |.  .+...+.|+|++ .+++.+.  +++|++.|  +++.++.+..+.  ..-.+++.. +++ ++.-.++
T Consensus         9 ~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~   86 (266)
T 2iwa_A            9 VEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKN   86 (266)
T ss_dssp             EEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCS
T ss_pred             ceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCC
Confidence            35566663 55  457899999988 5555553  57899999  889888887333  233455542 244 4555688


Q ss_pred             cEEEEEcCCCceeceeeec-cccccc---ceeEEeeccCCceEEEeCCCCceeee
Q 008510           92 VTRIWTVHSDKVADSLELE-AYASEL---SQYKLCRKKVGGLKLEDLPGLEALQI  142 (563)
Q Consensus        92 ~Irvwd~~~~~~~~~~~~~-~~~~~v---~~~~~~~~~~~~i~~~d~~~~~~l~~  142 (563)
                      .+.++|..+.+........ ...-.+   ....+.....+.+.+.|..+.+....
T Consensus        87 ~v~viD~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~  141 (266)
T 2iwa_A           87 IGFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKK  141 (266)
T ss_dssp             EEEEEETTTTEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEE
T ss_pred             EEEEEECCCCcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEE
Confidence            9999999998866554433 111001   12233334567899999887665443

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=96.09  E-value=0.077  Score=49.67  Aligned_cols=137  Identities=11%  Similarity=0.024  Sum_probs=85.2

Q ss_pred             CcchHHHHHHHHHhhcC-CCccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHH
Q 008510          418 LPANLLTGIRAVTNLFK-NSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAAL  496 (563)
Q Consensus       418 ~~~~~ll~lR~l~N~f~-~~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~  496 (563)
                      .+..+.-++++|+|+.. ++..+..+..  ..++..+...+.+.+..+|..++..+.|++.........-.....+..++
T Consensus        99 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~  176 (252)
T 4hxt_A           99 DSEVQKEAARALANIASGPDEAIKAIVD--AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLV  176 (252)
T ss_dssp             SHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCHHHHHHHHH--CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHH
Confidence            45677889999999995 4455554443  23455555566677888999999999999864211111111123566667


Q ss_pred             HhhhhcccChhHHHHHHHHHhhhhc-hhHHHHHhhhcChHHHHHHHhhcCChhHHHHHHHHHH
Q 008510          497 EIAEEESIEVDSKYRALVAIGTLML-EGLVKKIALDFDVGNIARVAKASKETKIAEVGADIEL  558 (563)
Q Consensus       497 ~~l~~~~~~~Ea~~R~l~AlG~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ei~~  558 (563)
                      +++.  ..+++.....+.+|++|.. .++..+.....++-..+-.+....+.++++-+..++.
T Consensus       177 ~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~  237 (252)
T 4hxt_A          177 KLLT--STDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALE  237 (252)
T ss_dssp             HHTT--CSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred             HHHC--CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHH
Confidence            7774  4678999999999999997 4444443333343333333333445566665555543

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=95.89  E-value=0.035  Score=61.30  Aligned_cols=52  Identities=8%  Similarity=0.143  Sum_probs=39.8

Q ss_pred             CCcEEEEc--CCceeEEEecCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCce
Q 008510           52 DRFAKIWK--DGVCVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKV  103 (563)
Q Consensus        52 D~tvriWd--~~~~~~~l~h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~  103 (563)
                      +++++.||  +++.+..+.+...++.-.+...|. +..|+.||.++.||.++++.
T Consensus       454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~  508 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEK  508 (689)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             ceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCcc
Confidence            47799999  888888877555555445555555 78889999999999999983

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=95.86  E-value=1.2  Score=41.92  Aligned_cols=98  Identities=11%  Similarity=-0.033  Sum_probs=64.7

Q ss_pred             CEEEEEECCCcEEEEcCCCceeEEEe-cCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc-CCceeEEEe-cC-CcEEEEE
Q 008510            4 VGIISASHDCTIRLWALTGQVLMEMV-GHTAIVYSIDSHASG--LIVSGSEDRFAKIWK-DGVCVQSIE-HP-GCVWDAK   77 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~~g~~i~~l~-gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd-~~~~~~~l~-h~-~~V~~v~   77 (563)
                      ..+++...++.|..++.+|.....+. .......+++++|++  .+++-...+.|.+++ ++.....+. .. .....++
T Consensus        49 ~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~  128 (267)
T 1npe_A           49 VVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIV  128 (267)
T ss_dssp             EEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEE
T ss_pred             EEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEE
Confidence            45555656788999998655433333 233567899999864  556666678899999 665444443 22 4678999


Q ss_pred             EccC-CcEEEEeC---CCcEEEEEcCCC
Q 008510           78 FLEN-GDIVTACS---DGVTRIWTVHSD  101 (563)
Q Consensus        78 ~~p~-g~i~sgs~---Dg~Irvwd~~~~  101 (563)
                      +.|+ |.+..+..   .+.|..++.+..
T Consensus       129 vd~~~g~lyv~~~~~~~~~I~~~~~dg~  156 (267)
T 1npe_A          129 TDPVRGNLYWTDWNRDNPKIETSHMDGT  156 (267)
T ss_dssp             EETTTTEEEEEECCSSSCEEEEEETTSC
T ss_pred             EeeCCCEEEEEECCCCCcEEEEEecCCC
Confidence            9995 55544443   368888887643

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=95.77  E-value=1.3  Score=43.10  Aligned_cols=135  Identities=9%  Similarity=0.029  Sum_probs=79.3

Q ss_pred             CCCEEEEEECCCcEEEEcCCCceeEEEecC--------------------CCcEEEEEEcC-CCeEEEEeCCCcEEEEc-
Q 008510            2 PGVGIISASHDCTIRLWALTGQVLMEMVGH--------------------TAIVYSIDSHA-SGLIVSGSEDRFAKIWK-   59 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~gH--------------------~~~V~~v~~~p-~g~l~s~s~D~tvriWd-   59 (563)
                      +|+.+.++..++.|..|+..+..+..+...                    .....++++.+ +|.+..+...+.+..++ 
T Consensus        29 ~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~~~d~  108 (322)
T 2fp8_A           29 TNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGS  108 (322)
T ss_dssp             TCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTEEEEECT
T ss_pred             CCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCCCEEEEeC
Confidence            356577788889999999854434444311                    13578999997 67555555555688888 


Q ss_pred             CCceeEEEe---c---CCcEEEEEEcc-CCcEEEEeC------------------CCcEEEEEcCCCceecee-eec---
Q 008510           60 DGVCVQSIE---H---PGCVWDAKFLE-NGDIVTACS------------------DGVTRIWTVHSDKVADSL-ELE---  110 (563)
Q Consensus        60 ~~~~~~~l~---h---~~~V~~v~~~p-~g~i~sgs~------------------Dg~Irvwd~~~~~~~~~~-~~~---  110 (563)
                      .+..+..+.   .   -.....+++.+ +|++..+..                  ++.|..||..+++..... .+.   
T Consensus       109 ~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~  188 (322)
T 2fp8_A          109 EGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPG  188 (322)
T ss_dssp             TCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCC
T ss_pred             CCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccCc
Confidence            544444443   1   12578899999 999554432                  367888888776532111 110   


Q ss_pred             ccccccc-e-eEEeeccCCceEEEeCCC
Q 008510          111 AYASELS-Q-YKLCRKKVGGLKLEDLPG  136 (563)
Q Consensus       111 ~~~~~v~-~-~~~~~~~~~~i~~~d~~~  136 (563)
                      ...-... . +.++....+.|..+++.+
T Consensus       189 gia~~~dg~~lyv~d~~~~~I~~~~~~~  216 (322)
T 2fp8_A          189 GAEVSADSSFVLVAEFLSHQIVKYWLEG  216 (322)
T ss_dssp             EEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred             ceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence            0000111 2 333444556788887764

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=95.77  E-value=0.23  Score=46.54  Aligned_cols=112  Identities=18%  Similarity=0.083  Sum_probs=73.0

Q ss_pred             HHHHHHHhhcCCCCCcchHHHHHHHHHhhcCC-CccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhc
Q 008510          404 VLMEMIEKVSSNPTLPANLLTGIRAVTNLFKN-SSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEK  482 (563)
Q Consensus       404 ~~~~~l~~~~~~~~~~~~~ll~lR~l~N~f~~-~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~  482 (563)
                      .+..++..+...  .+..+.-++++|.|+... +..+..+...  .++..+...+.+.+..+|..++.++.|++......
T Consensus        55 ~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~i~~~--g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~  130 (252)
T 4db8_A           55 ALPALVQLLSSP--NEQILQEALWALSNIASGGNEQIQAVIDA--GALPALVQLLSSPNEQILQEALWALSNIASGGNEQ  130 (252)
T ss_dssp             HHHHHHHGGGCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHT--THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             cHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCHHHHHHHHHc--CCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchH
Confidence            344455444432  256678999999999974 4555444432  34455555566678899999999999997532111


Q ss_pred             CCchhhhHHHHHHHHhhhhcccChhHHHHHHHHHhhhhc
Q 008510          483 KDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLML  521 (563)
Q Consensus       483 ~~~~~~~~l~~~~~~~l~~~~~~~Ea~~R~l~AlG~l~~  521 (563)
                      ...-.....+..+++.+.  ..+++.....+.+|++|..
T Consensus       131 ~~~~~~~~~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~  167 (252)
T 4db8_A          131 IQAVIDAGALPALVQLLS--SPNEQILQEALWALSNIAS  167 (252)
T ss_dssp             HHHHHHTTHHHHHHHGGG--CSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCCHHHHHHHHh--CCCHHHHHHHHHHHHHHHc
Confidence            011111235666677774  3578999999999999997

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=95.60  E-value=0.19  Score=46.81  Aligned_cols=111  Identities=13%  Similarity=0.075  Sum_probs=72.6

Q ss_pred             HHHHHHhhcCCCCCcchHHHHHHHHHhhcCC-CccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcC
Q 008510          405 LMEMIEKVSSNPTLPANLLTGIRAVTNLFKN-SSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKK  483 (563)
Q Consensus       405 ~~~~l~~~~~~~~~~~~~ll~lR~l~N~f~~-~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~  483 (563)
                      +..++..+..  ..+..+..++++|+|+..+ +..+..+..  ..++..+...+.+.+..+|..++.++.|++.......
T Consensus        46 i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~  121 (252)
T 4hxt_A           46 VEVLVKLLTS--TDSEVQKEAARALANIASGPDEAIKAIVD--AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI  121 (252)
T ss_dssp             HHHHHHHTTC--SCHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHHHHHcCChHHHHHHHH--CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence            4444444333  2356678999999999988 555555543  2234445555556788999999999999985322111


Q ss_pred             CchhhhHHHHHHHHhhhhcccChhHHHHHHHHHhhhhc
Q 008510          484 DEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLML  521 (563)
Q Consensus       484 ~~~~~~~l~~~~~~~l~~~~~~~Ea~~R~l~AlG~l~~  521 (563)
                      ..-.....+..+++.+.  ..+++.....+.+|++|..
T Consensus       122 ~~~~~~~~i~~L~~~l~--~~~~~~~~~a~~~L~~l~~  157 (252)
T 4hxt_A          122 KAIVDAGGVEVLVKLLT--STDSEVQKEAARALANIAS  157 (252)
T ss_dssp             HHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHHc
Confidence            11111234566677774  4678999999999999987

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=95.60  E-value=0.047  Score=60.77  Aligned_cols=139  Identities=9%  Similarity=0.042  Sum_probs=90.6

Q ss_pred             cchHHHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhh-hHHHHHHHH
Q 008510          419 PANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQ-SHVLSAALE  497 (563)
Q Consensus       419 ~~~~ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~-~~l~~~~~~  497 (563)
                      +..+--+++++||+..++..+..+... ...+..+...+.+.+..+|.+++..+-|++.........-.. ...+..+++
T Consensus       637 ~~Vq~~A~~~L~NLa~~~~~~~~~v~~-~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~  715 (810)
T 3now_A          637 LYLTRAAAQCLCNLVMSEDVIKMFEGN-NDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHT  715 (810)
T ss_dssp             TTHHHHHHHHHHHHTTSHHHHHHHHSS-SSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCChHHHHHHHhc-cCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHH
Confidence            456788999999999988766655521 234556666667778899999999999999742111100000 224455667


Q ss_pred             hhhhcccChhHHHHHHHHHhhhhc-hhHHHHHhhhcChHHHHHHHh-hc--CChhHHHHHHHHHHHh
Q 008510          498 IAEEESIEVDSKYRALVAIGTLML-EGLVKKIALDFDVGNIARVAK-AS--KETKIAEVGADIELLA  560 (563)
Q Consensus       498 ~l~~~~~~~Ea~~R~l~AlG~l~~-~~~~~~~~~~~~~~~~~~~~~-~~--~~~~i~~~~~ei~~ll  560 (563)
                      ++.  ..|.+..+|.+.||+|+.. +++........|.-..+..+. .+  +..++.+++.+.++.+
T Consensus       716 LL~--s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~l  780 (810)
T 3now_A          716 LIA--NPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAA  780 (810)
T ss_dssp             HHT--CSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHH
T ss_pred             HHC--CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHH
Confidence            774  4788999999999999997 334433333334333333332 12  4568999988887654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=95.52  E-value=0.91  Score=42.81  Aligned_cols=99  Identities=9%  Similarity=-0.031  Sum_probs=65.0

Q ss_pred             CCEEEEEECCCcEEEEcCCCceeEEEecC-CCcEEEEEEcCC-Ce-EEEEeC--CCcEEEEc-CCceeEEEe--cCCcEE
Q 008510            3 GVGIISASHDCTIRLWALTGQVLMEMVGH-TAIVYSIDSHAS-GL-IVSGSE--DRFAKIWK-DGVCVQSIE--HPGCVW   74 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~~g~~i~~l~gH-~~~V~~v~~~p~-g~-l~s~s~--D~tvriWd-~~~~~~~l~--h~~~V~   74 (563)
                      +..+++....+.|.+++.+|.....+... ......++++|+ +. +++...  .+.|..++ ++...+.+.  .-....
T Consensus        91 ~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~  170 (267)
T 1npe_A           91 RTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPN  170 (267)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEE
T ss_pred             CeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCc
Confidence            34455556677899999866544444322 245789999995 54 444433  35787777 666555554  223678


Q ss_pred             EEEEccCCc-E-EEEeCCCcEEEEEcCCC
Q 008510           75 DAKFLENGD-I-VTACSDGVTRIWTVHSD  101 (563)
Q Consensus        75 ~v~~~p~g~-i-~sgs~Dg~Irvwd~~~~  101 (563)
                      .+++.|++. + ++-...+.|.++|....
T Consensus       171 gia~d~~~~~lyv~d~~~~~I~~~~~~g~  199 (267)
T 1npe_A          171 GLTFDAFSSQLCWVDAGTHRAECLNPAQP  199 (267)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTEE
T ss_pred             EEEEcCCCCEEEEEECCCCEEEEEecCCC
Confidence            999999765 5 55556689999998754

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=95.47  E-value=0.048  Score=54.29  Aligned_cols=98  Identities=11%  Similarity=0.032  Sum_probs=58.1

Q ss_pred             CEEEEEE---CCCcEEEEcC-CCceeEEEecCCC-----------------------------cEEEEEEcCCC-eEEEE
Q 008510            4 VGIISAS---HDCTIRLWAL-TGQVLMEMVGHTA-----------------------------IVYSIDSHASG-LIVSG   49 (563)
Q Consensus         4 ~~l~s~s---~DgtIrlWd~-~g~~i~~l~gH~~-----------------------------~V~~v~~~p~g-~l~s~   49 (563)
                      ..+++.+   .++.|.+||+ +++..+.+.+|..                             .+..++++|+| .+..+
T Consensus       133 ~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~  212 (343)
T 2qe8_A          133 FVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLS  212 (343)
T ss_dssp             EEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEE
T ss_pred             EEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEE
Confidence            4456655   6889999999 6877776665421                             24667777777 56555


Q ss_pred             eCCCcEEEEc-C------Cc--------eeEEEecCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCc
Q 008510           50 SEDRFAKIWK-D------GV--------CVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDK  102 (563)
Q Consensus        50 s~D~tvriWd-~------~~--------~~~~l~h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~  102 (563)
                      ..++. ++|. +      +.        .+..+.+......+++.++|. +++...++.|.+||..+++
T Consensus       213 ~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~  280 (343)
T 2qe8_A          213 PMHST-SMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRA  280 (343)
T ss_dssp             ESSCS-EEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTE
T ss_pred             eCCCC-eEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCC
Confidence            55543 3443 1      00        012222333455677777777 4555566777788774443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=95.20  E-value=1.1  Score=42.56  Aligned_cols=117  Identities=16%  Similarity=0.192  Sum_probs=72.6

Q ss_pred             ceeEEEecCC--CcEEEEEEcCCC-eEEEEeCCC--cEEEEc--CCceeEEEecCCcEEEEEEccCCc-E-EEEeCCCcE
Q 008510           23 QVLMEMVGHT--AIVYSIDSHASG-LIVSGSEDR--FAKIWK--DGVCVQSIEHPGCVWDAKFLENGD-I-VTACSDGVT   93 (563)
Q Consensus        23 ~~i~~l~gH~--~~V~~v~~~p~g-~l~s~s~D~--tvriWd--~~~~~~~l~h~~~V~~v~~~p~g~-i-~sgs~Dg~I   93 (563)
                      +.++++ .|.  .+...+.|+ ++ .+.|+|.+|  +|++.|  +++.++.+..+.........++|+ + +..-.++.+
T Consensus        32 ~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v  109 (262)
T 3nol_A           32 QIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLG  109 (262)
T ss_dssp             EEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEE
T ss_pred             EEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEE
Confidence            455666 454  566889998 67 777888876  899999  899999888555554444444454 5 444458899


Q ss_pred             EEEEcCCCceeceeeecccccc---cceeEEeeccCCceEEEeCCCCceee
Q 008510           94 RIWTVHSDKVADSLELEAYASE---LSQYKLCRKKVGGLKLEDLPGLEALQ  141 (563)
Q Consensus        94 rvwd~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~i~~~d~~~~~~l~  141 (563)
                      .+||..+.+...........-.   -....+.....+.|.++|..+.+.+.
T Consensus       110 ~v~D~~t~~~~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~  160 (262)
T 3nol_A          110 FVWNIRNLRQVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVR  160 (262)
T ss_dssp             EEEETTTCCEEEEEECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSEEE
T ss_pred             EEEECccCcEEEEEECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeEEE
Confidence            9999999886554443321100   01222222334566666666555443

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=95.10  E-value=0.63  Score=50.91  Aligned_cols=138  Identities=14%  Similarity=0.145  Sum_probs=84.6

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeEEEecCCC-cEEEEEEcC---CCeEEEEeC------CCcEEEEc--CCceeEEEec
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTA-IVYSIDSHA---SGLIVSGSE------DRFAKIWK--DGVCVQSIEH   69 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~-~V~~v~~~p---~g~l~s~s~------D~tvriWd--~~~~~~~l~h   69 (563)
                      +..++.++.|+.|..+|. +|+.+.++..... ..+.+...|   ++.++.++.      ++.|..+|  +|+.+..+..
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~  196 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT  196 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence            467888889999999998 8999888765311 011111112   454444432      58999999  8998887752


Q ss_pred             -C---C---------------------------cE-EEEEEccCCc-EEEEeCCC-------------------cEEEEE
Q 008510           70 -P---G---------------------------CV-WDAKFLENGD-IVTACSDG-------------------VTRIWT   97 (563)
Q Consensus        70 -~---~---------------------------~V-~~v~~~p~g~-i~sgs~Dg-------------------~Irvwd   97 (563)
                       +   .                           .+ ..+++.|++. +..++.++                   .|..+|
T Consensus       197 ~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD  276 (668)
T 1kv9_A          197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR  276 (668)
T ss_dssp             SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred             cCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEc
Confidence             1   1                           11 1467777655 67776665                   399999


Q ss_pred             cCCCceeceeeecccc-------cc-----------cceeEEeeccCCceEEEeCCCCcee
Q 008510           98 VHSDKVADSLELEAYA-------SE-----------LSQYKLCRKKVGGLKLEDLPGLEAL  140 (563)
Q Consensus        98 ~~~~~~~~~~~~~~~~-------~~-----------v~~~~~~~~~~~~i~~~d~~~~~~l  140 (563)
                      .++++..=......+.       ..           .....+....+|.+.++|..+++.+
T Consensus       277 ~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l  337 (668)
T 1kv9_A          277 PDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI  337 (668)
T ss_dssp             TTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             CCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence            9998854222221111       00           0113455667788888887776655

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=94.58  E-value=0.12  Score=52.23  Aligned_cols=68  Identities=12%  Similarity=-0.003  Sum_probs=51.6

Q ss_pred             EEEcCCC-eEE-EEe---C-----CCcEEEEc--CCceeEEEecCCcEEEEEEccCCc--EEEEe-CCCcEEEEEcCCCc
Q 008510           38 IDSHASG-LIV-SGS---E-----DRFAKIWK--DGVCVQSIEHPGCVWDAKFLENGD--IVTAC-SDGVTRIWTVHSDK  102 (563)
Q Consensus        38 v~~~p~g-~l~-s~s---~-----D~tvriWd--~~~~~~~l~h~~~V~~v~~~p~g~--i~sgs-~Dg~Irvwd~~~~~  102 (563)
                      ++++|++ .+. +..   .     +..+.++|  +.+.+.++.-....+.++|+|+|+  +++.. .++.|.|+|..+++
T Consensus       269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k  348 (368)
T 1mda_H          269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ  348 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred             eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence            6799998 444 433   2     23566999  788888887445799999999997  45666 59999999999998


Q ss_pred             eec
Q 008510          103 VAD  105 (563)
Q Consensus       103 ~~~  105 (563)
                      ...
T Consensus       349 vv~  351 (368)
T 1mda_H          349 DQS  351 (368)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=94.56  E-value=0.19  Score=53.91  Aligned_cols=52  Identities=13%  Similarity=0.121  Sum_probs=36.3

Q ss_pred             CCcEEEEc--CCceeEEEecCCcEEEEEEcc-CCcEEEEeCCCcEEEEEcCCCce
Q 008510           52 DRFAKIWK--DGVCVQSIEHPGCVWDAKFLE-NGDIVTACSDGVTRIWTVHSDKV  103 (563)
Q Consensus        52 D~tvriWd--~~~~~~~l~h~~~V~~v~~~p-~g~i~sgs~Dg~Irvwd~~~~~~  103 (563)
                      ++.|..||  +++.+..+.+...+++..+.. ++.+..++.||.++.||.++++.
T Consensus       443 ~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~  497 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKE  497 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             CCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCE
Confidence            46788888  778777776544444433333 44477788899999999988873

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=94.52  E-value=0.77  Score=50.05  Aligned_cols=103  Identities=13%  Similarity=0.196  Sum_probs=65.6

Q ss_pred             CCCEEEEEECCC-----------cEEEEcC-CCc--eeEEEe-cCCCcEEEEEEcCCC-eEEEEeC-CCcEEEEc--CCc
Q 008510            2 PGVGIISASHDC-----------TIRLWAL-TGQ--VLMEMV-GHTAIVYSIDSHASG-LIVSGSE-DRFAKIWK--DGV   62 (563)
Q Consensus         2 ~g~~l~s~s~Dg-----------tIrlWd~-~g~--~i~~l~-gH~~~V~~v~~~p~g-~l~s~s~-D~tvriWd--~~~   62 (563)
                      +|+.++.||.+.           .+.+||. +++  .+..+. .+.....++++.++| .++.||. +..+.+||  +.+
T Consensus       197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~  276 (656)
T 1k3i_A          197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS  276 (656)
T ss_dssp             TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTE
T ss_pred             CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCc
Confidence            567888887653           5889998 443  233332 234445567778888 7778874 45799999  333


Q ss_pred             eeEE--EecCCcEEEEEEccCCc-EEEEe-CC-----CcEEEEEcCCCcee
Q 008510           63 CVQS--IEHPGCVWDAKFLENGD-IVTAC-SD-----GVTRIWTVHSDKVA  104 (563)
Q Consensus        63 ~~~~--l~h~~~V~~v~~~p~g~-i~sgs-~D-----g~Irvwd~~~~~~~  104 (563)
                      ....  +..+..-.+++..++|+ ++.|+ .+     ..+.+||..+.+..
T Consensus       277 W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~  327 (656)
T 1k3i_A          277 WIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT  327 (656)
T ss_dssp             EEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred             eeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcce
Confidence            2221  11233334566778888 67777 34     56999999887644

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=94.49  E-value=0.36  Score=43.78  Aligned_cols=100  Identities=16%  Similarity=0.071  Sum_probs=66.1

Q ss_pred             CcchHHHHHHHHHhhcCCC-ccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHH
Q 008510          418 LPANLLTGIRAVTNLFKNS-SWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAAL  496 (563)
Q Consensus       418 ~~~~~ll~lR~l~N~f~~~-~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~  496 (563)
                      .+..+.-+++.|+|+.... ..+..+..  ..++..+...+.+.+..+|..++..+.|++.........-.....+..++
T Consensus        25 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~  102 (210)
T 4db6_A           25 DQQELQSALRKLSQIASGGNEQIQAVID--AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV  102 (210)
T ss_dssp             CHHHHHHHHHHHHHHHTSCHHHHHHHHH--TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCHHHHHHHHH--cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHH
Confidence            4566788999999998544 44444443  23445555556667889999999999999853211111111122455667


Q ss_pred             HhhhhcccChhHHHHHHHHHhhhhc
Q 008510          497 EIAEEESIEVDSKYRALVAIGTLML  521 (563)
Q Consensus       497 ~~l~~~~~~~Ea~~R~l~AlG~l~~  521 (563)
                      +.+.  ..+++.....+.+|++|..
T Consensus       103 ~lL~--~~~~~v~~~a~~~L~~l~~  125 (210)
T 4db6_A          103 QLLS--SPNEQILQEALWALSNIAS  125 (210)
T ss_dssp             HHTT--CSCHHHHHHHHHHHHHHTT
T ss_pred             HHHc--CCcHHHHHHHHHHHHHHHc
Confidence            7774  3578999999999999986

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=94.27  E-value=3.4  Score=44.12  Aligned_cols=65  Identities=9%  Similarity=0.015  Sum_probs=44.1

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeEEEecCC--C--cEEE-EEEcCCCeEEEEeC------CCcEEEEc--CCceeEEEe
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHT--A--IVYS-IDSHASGLIVSGSE------DRFAKIWK--DGVCVQSIE   68 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~--~--~V~~-v~~~p~g~l~s~s~------D~tvriWd--~~~~~~~l~   68 (563)
                      +..++.++.|+.+..+|. +|+.+.+.....  .  .+.+ -.+. ++.++.++.      |+.|..+|  +|+.+..+.
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  193 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence            567788889999999999 899887765321  0  1211 1111 454444443      78999999  889888776

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=94.22  E-value=1.1  Score=42.18  Aligned_cols=118  Identities=12%  Similarity=0.038  Sum_probs=75.5

Q ss_pred             ceeEEEecCC--CcEEEEEEcCCCeEEEEeCCC--cEEEEc--CCceeEEEecCCcEEEEEEccCCc-E-EEEeCCCcEE
Q 008510           23 QVLMEMVGHT--AIVYSIDSHASGLIVSGSEDR--FAKIWK--DGVCVQSIEHPGCVWDAKFLENGD-I-VTACSDGVTR   94 (563)
Q Consensus        23 ~~i~~l~gH~--~~V~~v~~~p~g~l~s~s~D~--tvriWd--~~~~~~~l~h~~~V~~v~~~p~g~-i-~sgs~Dg~Ir   94 (563)
                      +.++++ .|.  .+...+.|+++-.+.|+|.+|  +|+..|  +++.++.+..+.........+.++ + +..-.++.+.
T Consensus        10 ~v~~~~-phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~   88 (243)
T 3mbr_X           10 RVVKRY-PHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGF   88 (243)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEE
T ss_pred             EEEEEc-CCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEE
Confidence            456666 565  567899998732677878764  899999  899999888555444444444444 4 4555689999


Q ss_pred             EEEcCCCceeceeeecccccc---cceeEEeeccCCceEEEeCCCCceee
Q 008510           95 IWTVHSDKVADSLELEAYASE---LSQYKLCRKKVGGLKLEDLPGLEALQ  141 (563)
Q Consensus        95 vwd~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~i~~~d~~~~~~l~  141 (563)
                      +||..+.+...........-.   -....+.....+.|.++|..+.+.+.
T Consensus        89 v~D~~tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~  138 (243)
T 3mbr_X           89 VYDLATLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVG  138 (243)
T ss_dssp             EEETTTTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEE
T ss_pred             EEECCcCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEE
Confidence            999999886654443321100   11223333346678888877665543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=94.17  E-value=1.8  Score=41.12  Aligned_cols=117  Identities=10%  Similarity=0.127  Sum_probs=74.9

Q ss_pred             ceeEEEecCC--CcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEEEccCCc-E-EEEeCCCcEEEE
Q 008510           23 QVLMEMVGHT--AIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKFLENGD-I-VTACSDGVTRIW   96 (563)
Q Consensus        23 ~~i~~l~gH~--~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~~~p~g~-i-~sgs~Dg~Irvw   96 (563)
                      +.++++ .|.  .+...+.|+.+-.+++.+.++.|+++|  +++.++.+ .+.........++|+ + +..-.++.+.+|
T Consensus        44 ~Vv~~~-phd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~  121 (268)
T 3nok_A           44 HIIREY-PHATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTW  121 (268)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEE
T ss_pred             EEEEEE-cCCCccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEE
Confidence            455666 344  567888887432788899999999999  88888887 555554433444454 4 445568999999


Q ss_pred             EcCCCceeceeeecccccc---cceeEEeeccCCceEEEeCCCCceee
Q 008510           97 TVHSDKVADSLELEAYASE---LSQYKLCRKKVGGLKLEDLPGLEALQ  141 (563)
Q Consensus        97 d~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~i~~~d~~~~~~l~  141 (563)
                      |..+.+...........-.   -....+.....+.|.++|..+.+.+.
T Consensus       122 D~~Tl~~~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~  169 (268)
T 3nok_A          122 SGMPPQRERTTRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVG  169 (268)
T ss_dssp             ETTTTEEEEEEECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEE
T ss_pred             ECCcCcEEEEEeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEE
Confidence            9999986655443321101   11233333446778888877665544

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=93.86  E-value=1.6  Score=46.95  Aligned_cols=102  Identities=12%  Similarity=0.107  Sum_probs=68.0

Q ss_pred             CCEEEEEEC-CCcEEEEcC--CCceeEEEecCCCc-----------EEEEEEcCCC-e----EEEEeCCCcEEEEc--CC
Q 008510            3 GVGIISASH-DCTIRLWAL--TGQVLMEMVGHTAI-----------VYSIDSHASG-L----IVSGSEDRFAKIWK--DG   61 (563)
Q Consensus         3 g~~l~s~s~-DgtIrlWd~--~g~~i~~l~gH~~~-----------V~~v~~~p~g-~----l~s~s~D~tvriWd--~~   61 (563)
                      +..++.++. ++.|.-+|.  +|+.+.++......           ...+++.|.+ .    ++.++.|+.+.-+|  +|
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence            456777777 889999998  79988887643221           1234554433 5    88899999999999  88


Q ss_pred             ceeEEEecCC-----cEEEEEEccCCcEEEEeC------CCcEEEEEcCCCcee
Q 008510           62 VCVQSIEHPG-----CVWDAKFLENGDIVTACS------DGVTRIWTVHSDKVA  104 (563)
Q Consensus        62 ~~~~~l~h~~-----~V~~v~~~p~g~i~sgs~------Dg~Irvwd~~~~~~~  104 (563)
                      +.+.......     .+.+--..-+|.++.++.      +|.|+-||.++++..
T Consensus       142 ~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~  195 (599)
T 1w6s_A          142 ETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQV  195 (599)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEE
T ss_pred             CEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEE
Confidence            8887765221     222111112566666653      899999999999843

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=93.55  E-value=1.9  Score=44.24  Aligned_cols=98  Identities=9%  Similarity=0.087  Sum_probs=61.3

Q ss_pred             EEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeC-CC----cEEEEc-CCcee--EEEecCCcEEE
Q 008510            5 GIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSE-DR----FAKIWK-DGVCV--QSIEHPGCVWD   75 (563)
Q Consensus         5 ~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~-D~----tvriWd-~~~~~--~~l~h~~~V~~   75 (563)
                      .|..+...+.|+.+|+++..+..+.......+.++|+++| .+..+.. ++    .+...+ .+...  ..+..-...+.
T Consensus       151 ~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~~~~~p~g  230 (430)
T 3tc9_A          151 HLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTKGQNCNG  230 (430)
T ss_dssp             EEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEEECSSCCC
T ss_pred             eEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeeccCCCceE
Confidence            4444544478888998665566665556678999999998 4554443 22    233333 33322  33332234567


Q ss_pred             EEEcc-CCcE-EEEeCCCcEEEEEcCCCc
Q 008510           76 AKFLE-NGDI-VTACSDGVTRIWTVHSDK  102 (563)
Q Consensus        76 v~~~p-~g~i-~sgs~Dg~Irvwd~~~~~  102 (563)
                      +++.| +|.| ++-..++.|+.|+...+.
T Consensus       231 iavdp~~g~lyv~d~~~~~V~~~~~~~~~  259 (430)
T 3tc9_A          231 AETHPINGELYFNSWNAGQVFRYDFTTQE  259 (430)
T ss_dssp             EEECTTTCCEEEEETTTTEEEEEETTTTE
T ss_pred             EEEeCCCCEEEEEECCCCEEEEEECCCCc
Confidence            78999 7775 455567889999988664

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=93.30  E-value=0.54  Score=50.55  Aligned_cols=51  Identities=16%  Similarity=0.188  Sum_probs=31.5

Q ss_pred             CCcEEEEc--CCceeEEEecCCcEEEEEEc-cCCcEEEEeCCCcEEEEEcCCCc
Q 008510           52 DRFAKIWK--DGVCVQSIEHPGCVWDAKFL-ENGDIVTACSDGVTRIWTVHSDK  102 (563)
Q Consensus        52 D~tvriWd--~~~~~~~l~h~~~V~~v~~~-p~g~i~sgs~Dg~Irvwd~~~~~  102 (563)
                      ++.+..||  +++.+....+...++.-... .+|.+..|+.||.++.||.++++
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~  518 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGK  518 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCC
Confidence            56777777  67776666533333321111 23446667788888888888877

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=92.93  E-value=0.24  Score=54.30  Aligned_cols=53  Identities=8%  Similarity=0.170  Sum_probs=39.2

Q ss_pred             CCcEEEEc--CCceeEEEecCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCcee
Q 008510           52 DRFAKIWK--DGVCVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVA  104 (563)
Q Consensus        52 D~tvriWd--~~~~~~~l~h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~  104 (563)
                      ++.|..||  +++.+....+...++...+...|. ++.|+.|+.++.||.++++..
T Consensus       437 ~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l  492 (668)
T 1kv9_A          437 SGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL  492 (668)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhh
Confidence            47899999  888887777544455444444444 788899999999999998843

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=92.87  E-value=0.57  Score=49.96  Aligned_cols=90  Identities=10%  Similarity=-0.018  Sum_probs=63.1

Q ss_pred             CCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCC------------------------------------
Q 008510           12 DCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDR------------------------------------   53 (563)
Q Consensus        12 DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~------------------------------------   53 (563)
                      ++++.+.|. +.+.+.++.--. .-..++++|+| .+++++++.                                    
T Consensus       174 ~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~  252 (595)
T 1fwx_A          174 VNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE  252 (595)
T ss_dssp             EEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred             CceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE
Confidence            567888998 677777765211 23567789998 666666443                                    


Q ss_pred             --cEEEEc--C--Cce-eEEEecCCcEEEEEEccCCc--EEEEeCCCcEEEEEcCCCc
Q 008510           54 --FAKIWK--D--GVC-VQSIEHPGCVWDAKFLENGD--IVTACSDGVTRIWTVHSDK  102 (563)
Q Consensus        54 --tvriWd--~--~~~-~~~l~h~~~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~  102 (563)
                        .|.|.|  +  ++. +..+.-+....++.++|||+  ++++..+.+|.++|+.+.+
T Consensus       253 i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~  310 (595)
T 1fwx_A          253 LNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFD  310 (595)
T ss_dssp             ETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHH
T ss_pred             ECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccc
Confidence              466666  3  334 56666555778899999999  5667778999999998653

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=92.64  E-value=12  Score=41.42  Aligned_cols=97  Identities=9%  Similarity=0.047  Sum_probs=68.8

Q ss_pred             EEEEECCCcEEEEcCCCceeEEEec--------CCCcEEEEEEcCCCeEEEEeCCCcEEEEc-CCceeEEEec-------
Q 008510            6 IISASHDCTIRLWALTGQVLMEMVG--------HTAIVYSIDSHASGLIVSGSEDRFAKIWK-DGVCVQSIEH-------   69 (563)
Q Consensus         6 l~s~s~DgtIrlWd~~g~~i~~l~g--------H~~~V~~v~~~p~g~l~s~s~D~tvriWd-~~~~~~~l~h-------   69 (563)
                      +..|..+ -|.+|+........+..        ....|+++...++|.+..|+.++-|..|+ .......+.+       
T Consensus       276 lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l  354 (795)
T 4a2l_A          276 LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSL  354 (795)
T ss_dssp             EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSC
T ss_pred             EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCC
Confidence            4455555 48888884333333321        23579999999988777788888899998 4343444432       


Q ss_pred             -CCcEEEEEEccCCcEEEEeCCCcEEEEEcCCCce
Q 008510           70 -PGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKV  103 (563)
Q Consensus        70 -~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~~~~  103 (563)
                       ...|+++...++|.+..|+.++-|..||..+++.
T Consensus       355 ~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~  389 (795)
T 4a2l_A          355 SDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRF  389 (795)
T ss_dssp             SCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCE
T ss_pred             CCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcE
Confidence             2369999999999998899988899999887653

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=92.45  E-value=5.8  Score=38.11  Aligned_cols=80  Identities=19%  Similarity=0.197  Sum_probs=56.2

Q ss_pred             ceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEecCCcEEEEEEccCCcEEEEe--CCC-cEEEEE
Q 008510           23 QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIEHPGCVWDAKFLENGDIVTAC--SDG-VTRIWT   97 (563)
Q Consensus        23 ~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~h~~~V~~v~~~p~g~i~sgs--~Dg-~Irvwd   97 (563)
                      +.+..+..+ ....+++|+++| .+++-..++.|..|| .++....+........+++.++|+++.+.  .++ .|..+|
T Consensus        23 ~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d  101 (306)
T 2p4o_A           23 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLV  101 (306)
T ss_dssp             EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred             eEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEc
Confidence            445555433 567899999998 666666788999999 77665555556689999999999954443  222 466677


Q ss_pred             cCCCce
Q 008510           98 VHSDKV  103 (563)
Q Consensus        98 ~~~~~~  103 (563)
                      ..+++.
T Consensus       102 ~~~g~~  107 (306)
T 2p4o_A          102 KSDGTV  107 (306)
T ss_dssp             CTTSCE
T ss_pred             CCCCeE
Confidence            777653

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=92.05  E-value=0.81  Score=48.18  Aligned_cols=137  Identities=7%  Similarity=-0.015  Sum_probs=82.3

Q ss_pred             CcchHHHHHHHHHhhcCCCcc-HHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcC-CchhhhHHHHHH
Q 008510          418 LPANLLTGIRAVTNLFKNSSW-YSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKK-DEEGQSHVLSAA  495 (563)
Q Consensus       418 ~~~~~ll~lR~l~N~f~~~~~-~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~-~~~~~~~l~~~~  495 (563)
                      .+..+.-++++|+|+...... .+.+..  ..++..+...+...+..+|..++.++.|++....... ..-....++..+
T Consensus       342 ~~~v~~~A~~~L~nl~~~~~~~~~~~~~--~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L  419 (528)
T 4b8j_A          342 KKSIKKEACWTISNITAGNKDQIQAVIN--AGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPL  419 (528)
T ss_dssp             CHHHHHHHHHHHHHHHTSCHHHHHHHHH--TTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHHHHHHCCCHHHHHHHHH--CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHH
Confidence            456678899999999875432 222322  1233344444444577899999999999986521110 000011345566


Q ss_pred             HHhhhhcccChhHHHHHHHHHhhhhchh-H-----------HHHHhhhcChHHHHHHHhhcCChhHHHHHHHHHH
Q 008510          496 LEIAEEESIEVDSKYRALVAIGTLMLEG-L-----------VKKIALDFDVGNIARVAKASKETKIAEVGADIEL  558 (563)
Q Consensus       496 ~~~l~~~~~~~Ea~~R~l~AlG~l~~~~-~-----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ei~~  558 (563)
                      +.++.  ..+++.....+.+|++|+..+ .           ........+.-+.+..+....+..+.+.+..|+.
T Consensus       420 ~~lL~--~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~  492 (528)
T 4b8j_A          420 CDLLI--CPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILE  492 (528)
T ss_dssp             HHGGG--CSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred             HHHHc--CCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            67774  368899999999999998722 1           2333333344344555555566677777777664

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=91.99  E-value=2.1  Score=41.45  Aligned_cols=100  Identities=10%  Similarity=0.071  Sum_probs=66.5

Q ss_pred             cchHHHHHHHHHhhcCCCcc-HHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHH
Q 008510          419 PANLLTGIRAVTNLFKNSSW-YSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALE  497 (563)
Q Consensus       419 ~~~~ll~lR~l~N~f~~~~~-~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~~  497 (563)
                      +..+--++.+|+|+-.+... .+.+...  ..+..+...+.+.+..+|..++.++.|++.........-....++..+++
T Consensus       139 ~~v~~~A~~ALsnl~~~~~~~~~~~~~~--ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~  216 (296)
T 1xqr_A          139 DTVRVKALFAISCLVREQEAGLLQFLRL--DGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVA  216 (296)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHT--THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHC--CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHH
Confidence            44567789999999876544 3344431  23445555555678899999999999998652111111112235566677


Q ss_pred             hhhhcccChhHHHHHHHHHhhhhch
Q 008510          498 IAEEESIEVDSKYRALVAIGTLMLE  522 (563)
Q Consensus       498 ~l~~~~~~~Ea~~R~l~AlG~l~~~  522 (563)
                      ++..  .|.+...-.+-||++|+..
T Consensus       217 LL~~--~d~~v~~~al~aL~~l~~~  239 (296)
T 1xqr_A          217 LVRT--EHSPFHEHVLGALCSLVTD  239 (296)
T ss_dssp             HHTS--CCSTHHHHHHHHHHHHHTT
T ss_pred             HHcC--CChhHHHHHHHHHHHHHhC
Confidence            7753  5789999999999999983

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=91.93  E-value=0.94  Score=48.78  Aligned_cols=26  Identities=4%  Similarity=-0.018  Sum_probs=21.5

Q ss_pred             CEEEEEECCCcEEEEcC-CCceeEEEe
Q 008510            4 VGIISASHDCTIRLWAL-TGQVLMEMV   29 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~-~g~~i~~l~   29 (563)
                      ..++.++.+|.+.+.|. +|+.+....
T Consensus       324 ~~v~~~~~~G~l~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          324 KLLTHPDRNGIVYTLDRTDGALVSANK  350 (599)
T ss_dssp             EEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEEECCCcEEEEEECCCCCEeeccc
Confidence            46777889999999999 899887654

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=91.68  E-value=0.92  Score=50.35  Aligned_cols=97  Identities=9%  Similarity=-0.049  Sum_probs=56.6

Q ss_pred             CCCEEEEEEC-C----CcEEEEcC-CC-ceeE-EEecCCCcEEEEEEcCCC-eEEEEeCCC-----cEEEEc--CCce--
Q 008510            2 PGVGIISASH-D----CTIRLWAL-TG-QVLM-EMVGHTAIVYSIDSHASG-LIVSGSEDR-----FAKIWK--DGVC--   63 (563)
Q Consensus         2 ~g~~l~s~s~-D----gtIrlWd~-~g-~~i~-~l~gH~~~V~~v~~~p~g-~l~s~s~D~-----tvriWd--~~~~--   63 (563)
                      ||++++-+.. +    .+|+++|+ +| +.+. .+.+   ...+++|+||| .|+....|.     .|..|+  ++..  
T Consensus       185 DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~  261 (751)
T 2xe4_A          185 EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSED  261 (751)
T ss_dssp             TTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGC
T ss_pred             CCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhc
Confidence            5676664433 2    25999999 66 5321 1211   12467899998 655555552     455666  3321  


Q ss_pred             eEEEe--cCCcEEEEEEccCCc-EEEEeC---CCcEEEEEcCCC
Q 008510           64 VQSIE--HPGCVWDAKFLENGD-IVTACS---DGVTRIWTVHSD  101 (563)
Q Consensus        64 ~~~l~--h~~~V~~v~~~p~g~-i~sgs~---Dg~Irvwd~~~~  101 (563)
                      ...+.  .......+.|+|||+ |+..+.   ...|+++|+.++
T Consensus       262 ~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          262 VCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             EEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             EEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence            22333  334567889999998 554432   346788888765

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=91.61  E-value=11  Score=41.74  Aligned_cols=99  Identities=11%  Similarity=0.054  Sum_probs=70.9

Q ss_pred             EEEEEECCCcEEEEcCCCceeEEEec-------CCCcEEEEEEcCCCeEEEEeCCCcEEEEc-CCceeEEEec-------
Q 008510            5 GIISASHDCTIRLWALTGQVLMEMVG-------HTAIVYSIDSHASGLIVSGSEDRFAKIWK-DGVCVQSIEH-------   69 (563)
Q Consensus         5 ~l~s~s~DgtIrlWd~~g~~i~~l~g-------H~~~V~~v~~~p~g~l~s~s~D~tvriWd-~~~~~~~l~h-------   69 (563)
                      .+..|+.++-|..|+........+..       ....|.++...++|.+..|..++-+..|+ .......+.+       
T Consensus       322 ~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~  401 (795)
T 4a2l_A          322 GMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESAR  401 (795)
T ss_dssp             CEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------
T ss_pred             CEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCccc
Confidence            35667777778888873322233321       24569999998888777788887899999 4333333331       


Q ss_pred             ---CCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCce
Q 008510           70 ---PGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKV  103 (563)
Q Consensus        70 ---~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~  103 (563)
                         ...|+++...++|+ +..|+.++-+..||..+++.
T Consensus       402 ~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~  439 (795)
T 4a2l_A          402 GIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV  439 (795)
T ss_dssp             CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE
T ss_pred             CCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE
Confidence               24799999999999 99999988899999988763

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=90.96  E-value=4  Score=39.48  Aligned_cols=136  Identities=7%  Similarity=-0.043  Sum_probs=80.5

Q ss_pred             cchhcHHHHhhcCCCchhhhhhcccchhhHHHHHHHhhcCCCCCcchHHHHHHHHHhhcCCCc-cHHHHHhh--HHHHHH
Q 008510          375 FPVIDILRMTILHPDGASLLLKHVENQNDVLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSS-WYSWLQKN--RSEILD  451 (563)
Q Consensus       375 fP~lDL~Rl~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~lR~l~N~f~~~~-~~~~~~~~--~~~il~  451 (563)
                      ..++|.+.-++-+......+.+     .+.+..++.....+ +.+..+.-++++++|+-.+.. .++.+...  ...++.
T Consensus        58 ~~Al~~L~~lv~~~dna~~~~~-----~G~l~~Lv~~lL~s-~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~  131 (296)
T 1xqr_A           58 EGALELLADLCENMDNAADFCQ-----LSGMHLLVGRYLEA-GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR  131 (296)
T ss_dssp             HHHHHHHHHHHTSHHHHHHHHH-----TTHHHHHHHTTTTC-SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHhChhhHHHHHH-----cCCHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHH
Confidence            3567777766665554333331     12233444412332 345677899999999988755 44455432  444444


Q ss_pred             HhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHHhhhhcccChhHHHHHHHHHhhhhc
Q 008510          452 AFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLML  521 (563)
Q Consensus       452 ~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~Ea~~R~l~AlG~l~~  521 (563)
                      .+..   .++..+|..++..+-|++.-.......-.....+..++.++.  ..|.+...+.+.||++|..
T Consensus       132 LL~~---~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~--~~d~~v~~~A~~aLs~L~~  196 (296)
T 1xqr_A          132 LLDR---DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ--QQVQKLKVKSAFLLQNLLV  196 (296)
T ss_dssp             HHHH---CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH--SSCHHHHHHHHHHHHHHHH
T ss_pred             HHcc---CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHHh
Confidence            4432   246788988989998986432111100011234556667774  3588999999999999987

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=90.79  E-value=6.4  Score=38.01  Aligned_cols=98  Identities=5%  Similarity=-0.001  Sum_probs=59.5

Q ss_pred             CEEEEEECCCcEEEEcCCCceeEEEec-----CCCcEEEEEEcC-CC-eEEEEeC-----------------CCcEEEEc
Q 008510            4 VGIISASHDCTIRLWALTGQVLMEMVG-----HTAIVYSIDSHA-SG-LIVSGSE-----------------DRFAKIWK   59 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~~g~~i~~l~g-----H~~~V~~v~~~p-~g-~l~s~s~-----------------D~tvriWd   59 (563)
                      ..|+.+...+.|..+|..+..+..+..     .......+++.+ +| ..++-..                 ++.|..||
T Consensus        92 g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d  171 (322)
T 2fp8_A           92 NQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD  171 (322)
T ss_dssp             TEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred             CcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEe
Confidence            445556555558888885433333321     123578899999 88 5454322                 35677788


Q ss_pred             -CCceeEEEe-cCCcEEEEEEccCCc-EEEE-eCCCcEEEEEcCCC
Q 008510           60 -DGVCVQSIE-HPGCVWDAKFLENGD-IVTA-CSDGVTRIWTVHSD  101 (563)
Q Consensus        60 -~~~~~~~l~-h~~~V~~v~~~p~g~-i~sg-s~Dg~Irvwd~~~~  101 (563)
                       ....+..+. .-.....++++|+|+ +..+ ...+.|++|++...
T Consensus       172 ~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~  217 (322)
T 2fp8_A          172 PSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGP  217 (322)
T ss_dssp             TTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSST
T ss_pred             CCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCC
Confidence             433333332 222445689999997 5444 55689999998753

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=90.68  E-value=2.7  Score=44.09  Aligned_cols=100  Identities=16%  Similarity=0.165  Sum_probs=64.7

Q ss_pred             cchHHHHHHHHHhhcCCCcc-HHHHHhhHHHHHHHhhhhccCC-ChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHH
Q 008510          419 PANLLTGIRAVTNLFKNSSW-YSWLQKNRSEILDAFSSCYSSS-NKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAAL  496 (563)
Q Consensus       419 ~~~~ll~lR~l~N~f~~~~~-~~~~~~~~~~il~~~~~~~~~~-~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~  496 (563)
                      +..+.-++++|+|+..+... .+.+..  ..++..+...+.+. +..+|..++.++-|++.........-....++..++
T Consensus       300 ~~v~~~a~~~L~nl~~~~~~~~~~~~~--~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~  377 (528)
T 4b8j_A          300 PSVLIPALRTVGNIVTGDDAQTQCIID--HQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLV  377 (528)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHT--TTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHH--hhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHH
Confidence            45678899999999986543 333332  23444455555556 788999999999999863111000000113355566


Q ss_pred             HhhhhcccChhHHHHHHHHHhhhhch
Q 008510          497 EIAEEESIEVDSKYRALVAIGTLMLE  522 (563)
Q Consensus       497 ~~l~~~~~~~Ea~~R~l~AlG~l~~~  522 (563)
                      +++..  .+++.....+.||++|...
T Consensus       378 ~lL~~--~~~~v~~~a~~aL~nl~~~  401 (528)
T 4b8j_A          378 NLLQT--AEFDIKKEAAWAISNATSG  401 (528)
T ss_dssp             HHHHH--SCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhc--CCHHHHHHHHHHHHHHHcC
Confidence            77743  4789999999999999874

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=90.42  E-value=8.1  Score=41.11  Aligned_cols=155  Identities=7%  Similarity=-0.012  Sum_probs=93.6

Q ss_pred             CCCEEEEEEC-CCcEEEEcC-CCceeEEEec-CCCcEEEEEE-c-CCC-eEEEEeC------------------CCcEEE
Q 008510            2 PGVGIISASH-DCTIRLWAL-TGQVLMEMVG-HTAIVYSIDS-H-ASG-LIVSGSE------------------DRFAKI   57 (563)
Q Consensus         2 ~g~~l~s~s~-DgtIrlWd~-~g~~i~~l~g-H~~~V~~v~~-~-p~g-~l~s~s~------------------D~tvri   57 (563)
                      ||+++..+.. +..|.+-|+ +.++.+.+.- .......+++ . |++ +++.+++                  ++.+.+
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv  179 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  179 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence            4666555554 556999999 7888875542 2245788887 4 888 6666643                  356888


Q ss_pred             Ec--CCceeEEEecCCcEEEEEEccCCc-EEEEeCCC---------------cEEEEEcCCCceeceeeeccccccccee
Q 008510           58 WK--DGVCVQSIEHPGCVWDAKFLENGD-IVTACSDG---------------VTRIWTVHSDKVADSLELEAYASELSQY  119 (563)
Q Consensus        58 Wd--~~~~~~~l~h~~~V~~v~~~p~g~-i~sgs~Dg---------------~Irvwd~~~~~~~~~~~~~~~~~~v~~~  119 (563)
                      .|  +.+.+.++.-.+.-..++++|+|+ +.+.+.+.               .|.++|.......    +.     ....
T Consensus       180 ID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~----v~-----~Gk~  250 (595)
T 1fwx_A          180 VDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKA----IA-----AGDY  250 (595)
T ss_dssp             EETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHH----HH-----HTCS
T ss_pred             EECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEe----cc-----CCCe
Confidence            88  666667766434556788999998 56666543               3556654322100    00     0000


Q ss_pred             EEeeccCCceEEEeCCC--Cce-e----------eecccCCCeEEEEecCCCeEEEEEecccc
Q 008510          120 KLCRKKVGGLKLEDLPG--LEA-L----------QIPGTNAGQTKVVREGDNGVAYSWDMKEQ  169 (563)
Q Consensus       120 ~~~~~~~~~i~~~d~~~--~~~-l----------~~~g~~dg~~~l~~~~~~~~~~~wd~~~~  169 (563)
                      ..    .+.+.+.|..+  ... +          .+..++||.+.++.+.....+.++|..+.
T Consensus       251 ~~----i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~  309 (595)
T 1fwx_A          251 QE----LNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF  309 (595)
T ss_dssp             EE----ETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred             eE----ECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccc
Confidence            00    14566777665  222 1          11256889988888877677778887643

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=90.11  E-value=6.9  Score=37.55  Aligned_cols=99  Identities=14%  Similarity=0.125  Sum_probs=61.1

Q ss_pred             CCCEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeC-CC-cEEEEc--CCceeEEEecC--CcEE
Q 008510            2 PGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSE-DR-FAKIWK--DGVCVQSIEHP--GCVW   74 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~-D~-tvriWd--~~~~~~~l~h~--~~V~   74 (563)
                      +|+.+++...++.|..||.+++....+. ......++++.++| .+++... ++ .|..++  +++.......+  ....
T Consensus        42 ~g~lyv~d~~~~~I~~~d~~g~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~  120 (306)
T 2p4o_A           42 DGTIFVTNHEVGEIVSITPDGNQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLN  120 (306)
T ss_dssp             TSCEEEEETTTTEEEEECTTCCEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEE
T ss_pred             CCCEEEEeCCCCeEEEECCCCceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccC
Confidence            4666666667889999998766544443 34568899999999 5444433 33 355555  55543322222  2345


Q ss_pred             EEEEccCCc-EEEEeCCCcEEEEEcCCC
Q 008510           75 DAKFLENGD-IVTACSDGVTRIWTVHSD  101 (563)
Q Consensus        75 ~v~~~p~g~-i~sgs~Dg~Irvwd~~~~  101 (563)
                      .++..+++. +++-..++.|.++|...+
T Consensus       121 g~~~~~~~~~~v~d~~~g~i~~~d~~~~  148 (306)
T 2p4o_A          121 GITPLSDTQYLTADSYRGAIWLIDVVQP  148 (306)
T ss_dssp             EEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred             cccccCCCcEEEEECCCCeEEEEeCCCC
Confidence            555566666 444445888999998764

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=89.84  E-value=4  Score=39.89  Aligned_cols=71  Identities=11%  Similarity=0.151  Sum_probs=48.8

Q ss_pred             ecCCCcEEEEEEcCCCeEEEEeCCCcE-EEEcC-CceeEEEe--cCCcEEEEEEccCCcEEEEeCCCcEEEEEcC
Q 008510           29 VGHTAIVYSIDSHASGLIVSGSEDRFA-KIWKD-GVCVQSIE--HPGCVWDAKFLENGDIVTACSDGVTRIWTVH   99 (563)
Q Consensus        29 ~gH~~~V~~v~~~p~g~l~s~s~D~tv-riWd~-~~~~~~l~--h~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~   99 (563)
                      .++...++++.+.|++.++..+.++.+ +-+|. +..-+.+.  .+..+..+.+.+++++..++.+|.+++.+.+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D  233 (327)
T 2xbg_A          159 QEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPD  233 (327)
T ss_dssp             CSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEETTTEEEEEETT
T ss_pred             cCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEeCCceEEEecCC
Confidence            456678999999998844444455554 44443 55544444  4558999999999887777888988877533

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=89.55  E-value=2.7  Score=44.10  Aligned_cols=136  Identities=7%  Similarity=-0.016  Sum_probs=85.2

Q ss_pred             cchHHHHHHHHHhhcCCCccHH-HHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCc-hhhhHHHHHHH
Q 008510          419 PANLLTGIRAVTNLFKNSSWYS-WLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDE-EGQSHVLSAAL  496 (563)
Q Consensus       419 ~~~~ll~lR~l~N~f~~~~~~~-~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~-~~~~~l~~~~~  496 (563)
                      +..+--++.+|+|+..+..... .+..  ..++..+...+.+.+..+|..++..+.|++......... -.....+..++
T Consensus       330 ~~v~~~A~~aL~nl~a~~~~~~~~v~~--~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~  407 (510)
T 3ul1_B          330 TNIQKEATWTMSNITAGRQDQIQQVVN--HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLM  407 (510)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHh--cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHH
Confidence            4556889999999998765433 3332  234555556666678889999999999998642111000 00112345556


Q ss_pred             HhhhhcccChhHHHHHHHHHhhhhchh-------HHHHHhhhcChHHHHHHHhhcCChhHHHHHHHHHH
Q 008510          497 EIAEEESIEVDSKYRALVAIGTLMLEG-------LVKKIALDFDVGNIARVAKASKETKIAEVGADIEL  558 (563)
Q Consensus       497 ~~l~~~~~~~Ea~~R~l~AlG~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ei~~  558 (563)
                      +++.  ..|++.+...|-||.+++..+       ....+-...|.-+.++.+...++..|.+-+.+|++
T Consensus       408 ~LL~--~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie  474 (510)
T 3ul1_B          408 NLLS--AKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE  474 (510)
T ss_dssp             HGGG--CSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred             HHhc--CCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            7774  468899999999999998611       22223333444445566665666778887777754

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=89.55  E-value=2.2  Score=46.36  Aligned_cols=68  Identities=19%  Similarity=0.235  Sum_probs=44.7

Q ss_pred             EEEEcC-CC-eEEEEeCCC-----------cEEEEc--CCc--eeEEEe--cCCcEEEEEEccCCc-EEEEeC-CCcEEE
Q 008510           37 SIDSHA-SG-LIVSGSEDR-----------FAKIWK--DGV--CVQSIE--HPGCVWDAKFLENGD-IVTACS-DGVTRI   95 (563)
Q Consensus        37 ~v~~~p-~g-~l~s~s~D~-----------tvriWd--~~~--~~~~l~--h~~~V~~v~~~p~g~-i~sgs~-Dg~Irv   95 (563)
                      ++++.+ +| .++.||.+.           .+.+||  +++  .+..+.  +.....++++.++|+ ++.|+. ++.+++
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            556777 77 777777653           578898  333  233343  222344578888999 677774 568999


Q ss_pred             EEcCCCcee
Q 008510           96 WTVHSDKVA  104 (563)
Q Consensus        96 wd~~~~~~~  104 (563)
                      ||..+.+..
T Consensus       270 yd~~t~~W~  278 (656)
T 1k3i_A          270 YDSSSDSWI  278 (656)
T ss_dssp             EEGGGTEEE
T ss_pred             ecCcCCcee
Confidence            999877643

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=89.48  E-value=1.6  Score=45.92  Aligned_cols=100  Identities=12%  Similarity=0.095  Sum_probs=65.5

Q ss_pred             CcchHHHHHHHHHhhcCCCccHH-HHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHH
Q 008510          418 LPANLLTGIRAVTNLFKNSSWYS-WLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAAL  496 (563)
Q Consensus       418 ~~~~~ll~lR~l~N~f~~~~~~~-~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~  496 (563)
                      .+..+.-++|++.|+........ .+..  ..++..+...+.+.+..+|..++..+.|++.........-....++..++
T Consensus       287 ~~~v~~~al~aL~nl~~~~~~~~~~i~~--~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv  364 (510)
T 3ul1_B          287 ELPIVTPALRAIGNIVTGTDEQTQKVID--AGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV  364 (510)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH
T ss_pred             ChhhhhHHHHHHHHhhcCCHHHHHHHhh--ccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHH
Confidence            34566788999999987765433 2222  22344555667778899999999999999864322111111123455566


Q ss_pred             HhhhhcccChhHHHHHHHHHhhhhc
Q 008510          497 EIAEEESIEVDSKYRALVAIGTLML  521 (563)
Q Consensus       497 ~~l~~~~~~~Ea~~R~l~AlG~l~~  521 (563)
                      +.+.  ..+.+...-...||+||..
T Consensus       365 ~lL~--~~~~~v~~~Aa~aL~Nl~~  387 (510)
T 3ul1_B          365 GVLS--KADFKTQKEAAWAITNYTS  387 (510)
T ss_dssp             HHHH--SSCHHHHHHHHHHHHHHHH
T ss_pred             HHHc--CCCHHHHHHHHHHHHHHHc
Confidence            7674  3577888889999999987

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=89.27  E-value=2  Score=45.29  Aligned_cols=99  Identities=12%  Similarity=0.102  Sum_probs=64.8

Q ss_pred             cchHHHHHHHHHhhcCCCccHH-HHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHH
Q 008510          419 PANLLTGIRAVTNLFKNSSWYS-WLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALE  497 (563)
Q Consensus       419 ~~~~ll~lR~l~N~f~~~~~~~-~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~~  497 (563)
                      +..+.-++|++.|+..+..... .+..  ..++..+...+.+.+..+|..++..+.|++.........-....++..++.
T Consensus       307 ~~v~~~a~~aL~nl~~~~~~~~~~i~~--~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~  384 (529)
T 3tpo_A          307 LPIVTPALRAIGNIVTGTDEQTQKVID--AGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG  384 (529)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHH--TTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHccchHHHHHHhh--cccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHH
Confidence            4556778999999987765433 2222  223444555566788999999999999998642221111111224555566


Q ss_pred             hhhhcccChhHHHHHHHHHhhhhc
Q 008510          498 IAEEESIEVDSKYRALVAIGTLML  521 (563)
Q Consensus       498 ~l~~~~~~~Ea~~R~l~AlG~l~~  521 (563)
                      .+.  ..+.+...-...||++|..
T Consensus       385 lL~--~~~~~v~~~A~~aL~nl~~  406 (529)
T 3tpo_A          385 VLS--KADFKTQKAAAWAITNYTS  406 (529)
T ss_dssp             HHH--SSCHHHHHHHHHHHHHHHH
T ss_pred             Hhc--CCCHHHHHHHHHHHHHHHc
Confidence            664  4577888889999999987

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=88.87  E-value=31  Score=37.90  Aligned_cols=98  Identities=12%  Similarity=-0.037  Sum_probs=65.6

Q ss_pred             EEEEEECCCcEEEEcC-CCceeEEEe--------------cCCCcEEEEEEcCCCeEEEEeCCCcEEEEc-CCceeEEEe
Q 008510            5 GIISASHDCTIRLWAL-TGQVLMEMV--------------GHTAIVYSIDSHASGLIVSGSEDRFAKIWK-DGVCVQSIE   68 (563)
Q Consensus         5 ~l~s~s~DgtIrlWd~-~g~~i~~l~--------------gH~~~V~~v~~~p~g~l~s~s~D~tvriWd-~~~~~~~l~   68 (563)
                      .+..|...+-|.+++. +++......              .+...|+++...++|.+..|..++-|..++ .......+.
T Consensus       270 ~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~  349 (781)
T 3v9f_A          270 KLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWS  349 (781)
T ss_dssp             EEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC
T ss_pred             CEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeec
Confidence            4555666455778887 333221111              134579999998888777788788888898 444444442


Q ss_pred             c-----------CCcEEEEEEccCCcEEEEeCCCcEEEEEcCCCc
Q 008510           69 H-----------PGCVWDAKFLENGDIVTACSDGVTRIWTVHSDK  102 (563)
Q Consensus        69 h-----------~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~~~  102 (563)
                      +           ...|+++...++|.+..|+.++-+..||..+++
T Consensus       350 ~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~  394 (781)
T 3v9f_A          350 YSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRV  394 (781)
T ss_dssp             ----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEE
T ss_pred             cCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCe
Confidence            1           246999999988998888877788999987654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=88.80  E-value=24  Score=38.82  Aligned_cols=98  Identities=14%  Similarity=-0.063  Sum_probs=65.7

Q ss_pred             EEEEEECCCcEEEEcCCCceeEEE----ecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc-CCceeEEEec----CCcEEE
Q 008510            5 GIISASHDCTIRLWALTGQVLMEM----VGHTAIVYSIDSHASGLIVSGSEDRFAKIWK-DGVCVQSIEH----PGCVWD   75 (563)
Q Consensus         5 ~l~s~s~DgtIrlWd~~g~~i~~l----~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd-~~~~~~~l~h----~~~V~~   75 (563)
                      .+..|+.++-|..|+........+    ......|+++...++|.+..|..++-+..++ .......+.+    ...|++
T Consensus       375 ~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~  454 (781)
T 3v9f_A          375 KLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRV  454 (781)
T ss_dssp             CEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEE
T ss_pred             CEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEE
Confidence            355566555678888733222222    1234679999988888666677777788888 4344444432    347999


Q ss_pred             EEEccCCcEEEEeCCCcEEEEEcCCCce
Q 008510           76 AKFLENGDIVTACSDGVTRIWTVHSDKV  103 (563)
Q Consensus        76 v~~~p~g~i~sgs~Dg~Irvwd~~~~~~  103 (563)
                      +...++|.+..|+. +-+..||..+++.
T Consensus       455 i~~d~~g~lwigt~-~Gl~~~~~~~~~~  481 (781)
T 3v9f_A          455 FYEDKNKKIWIGTH-AGVFVIDLASKKV  481 (781)
T ss_dssp             EEECTTSEEEEEET-TEEEEEESSSSSC
T ss_pred             EEECCCCCEEEEEC-CceEEEeCCCCeE
Confidence            99988999877777 5688899887653

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=88.31  E-value=14  Score=36.30  Aligned_cols=89  Identities=10%  Similarity=0.036  Sum_probs=62.8

Q ss_pred             CCcEEEEcCC----CceeEEEe--cC----------C-CcEEEEEEcCCC-eEEEEeCC-CcEEEEc-CCceeEEEe--c
Q 008510           12 DCTIRLWALT----GQVLMEMV--GH----------T-AIVYSIDSHASG-LIVSGSED-RFAKIWK-DGVCVQSIE--H   69 (563)
Q Consensus        12 DgtIrlWd~~----g~~i~~l~--gH----------~-~~V~~v~~~p~g-~l~s~s~D-~tvriWd-~~~~~~~l~--h   69 (563)
                      +..|..+|+.    ++.+....  +.          . .....+++.++| ..++++.- +.|...+ +++.+..+.  .
T Consensus        99 ~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~  178 (334)
T 2p9w_A           99 ASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWES  178 (334)
T ss_dssp             CCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECC
T ss_pred             CCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecC
Confidence            6778899986    76665443  11          1 247899999999 77778877 7777667 766554443  1


Q ss_pred             -----CCcEEEEEEccCCc-EEEEeCCCcEEEEEcCC
Q 008510           70 -----PGCVWDAKFLENGD-IVTACSDGVTRIWTVHS  100 (563)
Q Consensus        70 -----~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~  100 (563)
                           ......++++|+|. +++...+|.+..||++.
T Consensus       179 ~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          179 GNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             CCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             CCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence                 11366899999998 55555599999999883

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=88.06  E-value=0.45  Score=52.21  Aligned_cols=103  Identities=10%  Similarity=0.103  Sum_probs=67.6

Q ss_pred             cchHHHHHHHHHhhcCCCccH-HHHHh-h--H-HHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhc-CCchhhhHHH
Q 008510          419 PANLLTGIRAVTNLFKNSSWY-SWLQK-N--R-SEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEK-KDEEGQSHVL  492 (563)
Q Consensus       419 ~~~~ll~lR~l~N~f~~~~~~-~~~~~-~--~-~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~-~~~~~~~~l~  492 (563)
                      ...+-=++.++|||..++.+. +.+.. .  + .+=+..+...+.+.+..+|.|++.++.|++...-.- +.--...+.+
T Consensus       620 ~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi  699 (778)
T 3opb_A          620 VPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELI  699 (778)
T ss_dssp             HHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccH
Confidence            345666899999999988874 23321 1  1 122555666667789999999999999996432110 0000111344


Q ss_pred             HHHHHhhhhcccChhHHHHHHHHHhhhhc
Q 008510          493 SAALEIAEEESIEVDSKYRALVAIGTLML  521 (563)
Q Consensus       493 ~~~~~~l~~~~~~~Ea~~R~l~AlG~l~~  521 (563)
                      ..+++++....+++|..+|.++++-+|.-
T Consensus       700 ~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          700 ENAIQVFADQIDDIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence            55567675434789999999999999993

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=87.86  E-value=5  Score=39.89  Aligned_cols=190  Identities=14%  Similarity=0.051  Sum_probs=95.5

Q ss_pred             HHHHHHHHhcCCCCCccchhcHHHHhhcCC--CchhhhhhcccchhhHHHHHHHhhcCCCCCcchHHHHHHHHHhhcCCC
Q 008510          359 ISLLLKLLKTWPPAMIFPVIDILRMTILHP--DGASLLLKHVENQNDVLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNS  436 (563)
Q Consensus       359 ~~~l~~~l~~Wp~~~~fP~lDL~Rl~~l~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~lR~l~N~f~~~  436 (563)
                      ++.|.+++..=..+.+..+.-.+|-+....  ..-..+.  .   .+.+..++..+... ..+..+--++++|.|+-.+.
T Consensus       129 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~--~---~G~Ip~Lv~lL~~~-~~~~~~~~A~~aL~nLs~~~  202 (354)
T 3nmw_A          129 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLR--E---VGSVKALMECALEV-KKESTLKSVLSALWNLSAHC  202 (354)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHH--H---TTHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHH--H---CCCHHHHHHHHhcC-CCHHHHHHHHHHHHHHHccC
Confidence            555666664322344444555666555431  1112221  1   12233333322221 12334455778888887744


Q ss_pred             -ccHHHHHhhHHHHHHHhhhhccCCCh----hHHHHHHHHHHHHHhhhhhc---CCchhhhHHHHHHHHhhhhcccChhH
Q 008510          437 -SWYSWLQKNRSEILDAFSSCYSSSNK----NVQLSYSTLILNYAVLLIEK---KDEEGQSHVLSAALEIAEEESIEVDS  508 (563)
Q Consensus       437 -~~~~~~~~~~~~il~~~~~~~~~~~k----~~~~a~atl~~N~s~~~~~~---~~~~~~~~l~~~~~~~l~~~~~~~Ea  508 (563)
                       ..+..+... .-.+..+...+.+.+.    .++..++.++.|++.+....   +..-.....+..+++.|.  ..+.+.
T Consensus       203 ~~nk~~i~~~-~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~v  279 (354)
T 3nmw_A          203 TENKADICAV-DGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK--SHSLTI  279 (354)
T ss_dssp             HHHHHHHHHS-TTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTT--CSCHHH
T ss_pred             hhhhHHHHHh-cCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHc--CCChHH
Confidence             334433311 1223333333333222    47888888999998642211   111111224566677774  356788


Q ss_pred             HHHHHHHHhhhhc-hhHHHHHhhhcChHHHHHHHhhcCChhHHHHHHHHH
Q 008510          509 KYRALVAIGTLML-EGLVKKIALDFDVGNIARVAKASKETKIAEVGADIE  557 (563)
Q Consensus       509 ~~R~l~AlG~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ei~  557 (563)
                      ....+-||++|.. +.+..+.....+.-..+-.+-.+...++++.+...+
T Consensus       280 ~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL  329 (354)
T 3nmw_A          280 VSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAAL  329 (354)
T ss_dssp             HHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence            8999999999996 445554444444433333333355566666554443

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=87.80  E-value=10  Score=36.05  Aligned_cols=101  Identities=13%  Similarity=0.080  Sum_probs=48.5

Q ss_pred             CCCEEEEEECCC-----cEEEEcCCCceeEEEecC-CC-cEEEEEEcCCC-eEEEEeCC-----CcEEEEc-CCceeEEE
Q 008510            2 PGVGIISASHDC-----TIRLWALTGQVLMEMVGH-TA-IVYSIDSHASG-LIVSGSED-----RFAKIWK-DGVCVQSI   67 (563)
Q Consensus         2 ~g~~l~s~s~Dg-----tIrlWd~~g~~i~~l~gH-~~-~V~~v~~~p~g-~l~s~s~D-----~tvriWd-~~~~~~~l   67 (563)
                      ++..++.|+.++     .+.+||........+... .. .-.+++.. ++ .++.||.+     ..+.++| ....-..+
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~  190 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA-SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV  190 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEEE
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE-CCEEEEECCCCCCcccceEEEEeCCCCcEEeC
Confidence            355566666443     577777732222222111 11 11122222 45 66666655     3477777 33333333


Q ss_pred             e---cCCcEEEEEEccCCc-EEEEeCC-----CcEEEEEcCCCcee
Q 008510           68 E---HPGCVWDAKFLENGD-IVTACSD-----GVTRIWTVHSDKVA  104 (563)
Q Consensus        68 ~---h~~~V~~v~~~p~g~-i~sgs~D-----g~Irvwd~~~~~~~  104 (563)
                      .   .+..-.++... ++. ++.|+.+     ..+.+||..+.+..
T Consensus       191 ~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  235 (301)
T 2vpj_A          191 TPMATKRSGAGVALL-NDHIYVVGGFDGTAHLSSVEAYNIRTDSWT  235 (301)
T ss_dssp             CCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred             CCCCcccccceEEEE-CCEEEEEeCCCCCcccceEEEEeCCCCcEE
Confidence            3   22222222222 556 5667664     46888888877643

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=87.40  E-value=2  Score=45.25  Aligned_cols=96  Identities=17%  Similarity=0.085  Sum_probs=61.3

Q ss_pred             HHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHHhhhhc
Q 008510          423 LTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAEEE  502 (563)
Q Consensus       423 ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~~~l~~~  502 (563)
                      -.+..+++|+..+......+ .....++..+...+.+.+..++..++..+.|++.........-....++..+++.+.  
T Consensus       227 ~~a~~~L~nl~~~~~~~~~~-~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~--  303 (529)
T 3tpo_A          227 RNLTWTLSNLCRNKNPAPPL-DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG--  303 (529)
T ss_dssp             HHHHHHHHHHHCCCTTCCCH-HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHT--
T ss_pred             HHHHHHHHHHHhcccchhhH-HHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhc--
Confidence            34677888888765443322 123456666767777788889999999999987532111110011123455566664  


Q ss_pred             ccChhHHHHHHHHHhhhhc
Q 008510          503 SIEVDSKYRALVAIGTLML  521 (563)
Q Consensus       503 ~~~~Ea~~R~l~AlG~l~~  521 (563)
                      ..+++...-.+.|||+++.
T Consensus       304 ~~~~~v~~~a~~aL~nl~~  322 (529)
T 3tpo_A          304 ATELPIVTPALRAIGNIVT  322 (529)
T ss_dssp             CSCHHHHHHHHHHHHHHTT
T ss_pred             CCChhHHHHHHHHHHHHHc
Confidence            4577888899999999987

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=87.35  E-value=7.3  Score=40.78  Aligned_cols=100  Identities=14%  Similarity=0.081  Sum_probs=66.4

Q ss_pred             CcchHHHHHHHHHhhcCCC-ccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHH
Q 008510          418 LPANLLTGIRAVTNLFKNS-SWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAAL  496 (563)
Q Consensus       418 ~~~~~ll~lR~l~N~f~~~-~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~  496 (563)
                      .+..+..++++|+|+.... ..+..+...  .++..+...+...+..++..++..+.|++..............++..++
T Consensus       186 ~~~vr~~A~~aL~~l~~~~~~~~~~~~~~--~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~  263 (530)
T 1wa5_B          186 SVEVKEQAIWALGNVAGDSTDYRDYVLQC--NAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLA  263 (530)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHT--TCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHH
T ss_pred             CHHHHHHHHHHHHHHhCCCccchHHHHHc--CcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHH
Confidence            3566788999999998774 344444332  2334444444446778999999999999864211122222334566667


Q ss_pred             HhhhhcccChhHHHHHHHHHhhhhc
Q 008510          497 EIAEEESIEVDSKYRALVAIGTLML  521 (563)
Q Consensus       497 ~~l~~~~~~~Ea~~R~l~AlG~l~~  521 (563)
                      +++.  ..+++.....+.+|++|..
T Consensus       264 ~lL~--~~d~~v~~~a~~~L~~L~~  286 (530)
T 1wa5_B          264 KLIY--SMDTETLVDACWAISYLSD  286 (530)
T ss_dssp             HHTT--CCCHHHHHHHHHHHHHHHS
T ss_pred             HHHc--CCCHHHHHHHHHHHHHHhC
Confidence            7774  3578999999999999987

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=87.13  E-value=22  Score=34.21  Aligned_cols=99  Identities=10%  Similarity=-0.088  Sum_probs=65.4

Q ss_pred             CCEEEEEECCCcEEEEcCCCceeEEEe-cCCCcEEEEEEcCC-C-eEEEEeCC-CcEEEEc-CCceeEEEe--cCCcEEE
Q 008510            3 GVGIISASHDCTIRLWALTGQVLMEMV-GHTAIVYSIDSHAS-G-LIVSGSED-RFAKIWK-DGVCVQSIE--HPGCVWD   75 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~~g~~i~~l~-gH~~~V~~v~~~p~-g-~l~s~s~D-~tvriWd-~~~~~~~l~--h~~~V~~   75 (563)
                      ++.+++-...+.|.+.+.+|....++. ........+++.|. | .+++.... +.|...+ ++.....+.  .-.....
T Consensus        89 ~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~g  168 (316)
T 1ijq_A           89 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNG  168 (316)
T ss_dssp             TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEE
T ss_pred             CeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceE
Confidence            345555566788888888776554443 23456789999985 4 44554333 5677777 777666554  2236789


Q ss_pred             EEEccCCc-E-EEEeCCCcEEEEEcCCC
Q 008510           76 AKFLENGD-I-VTACSDGVTRIWTVHSD  101 (563)
Q Consensus        76 v~~~p~g~-i-~sgs~Dg~Irvwd~~~~  101 (563)
                      +++.|++. | ++-+..+.|..+|.+..
T Consensus       169 la~d~~~~~lY~~D~~~~~I~~~d~dg~  196 (316)
T 1ijq_A          169 ITLDLLSGRLYWVDSKLHSISSIDVNGG  196 (316)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             EEEeccCCEEEEEECCCCeEEEEecCCC
Confidence            99998654 5 45556678999998753

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=86.82  E-value=6.1  Score=43.86  Aligned_cols=113  Identities=11%  Similarity=0.003  Sum_probs=69.9

Q ss_pred             HHHHHHHhhcCCCCCcchHHHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcC
Q 008510          404 VLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKK  483 (563)
Q Consensus       404 ~~~~~l~~~~~~~~~~~~~ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~  483 (563)
                      .+..++..+... ..+..+.-++++|.|+..+...+..+...  .++..+...+.+.+..+|..++..+.|++......+
T Consensus       193 ~i~~Lv~~L~~~-~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~--g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~  269 (780)
T 2z6g_A          193 MVSAIVRTMQNT-NDVETARCTSGTLHNLSHHREGLLAIFKS--GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAK  269 (780)
T ss_dssp             HHHHHHHHHHHC-CCHHHHHHHHHHHHHHHTSHHHHHHHHHT--THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHH
T ss_pred             hHHHHHHHHcCC-CCHHHHHHHHHHHHHHhCCchhHHHHHHc--CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhH
Confidence            344444433322 24456788999999988776665555432  456666666677788999999999999987632221


Q ss_pred             CchhhhHHHHHHHHhhhhcccChhHHHHHHHHHhhhhc
Q 008510          484 DEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLML  521 (563)
Q Consensus       484 ~~~~~~~l~~~~~~~l~~~~~~~Ea~~R~l~AlG~l~~  521 (563)
                      ..-.....+..+++++..  .+.+.....+-+|.+|..
T Consensus       270 ~~v~~~g~v~~Lv~lL~~--~~~~v~~~a~~aL~~La~  305 (780)
T 2z6g_A          270 MAVRLAGGLQKMVALLNK--TNVKFLAITTDCLQILAY  305 (780)
T ss_dssp             HHHHHTTHHHHHHHGGGC--CCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHhc--CCHHHHHHHHHHHHHHhc
Confidence            111112345666777743  455555555667777765

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=86.39  E-value=4.1  Score=42.78  Aligned_cols=100  Identities=15%  Similarity=0.104  Sum_probs=63.1

Q ss_pred             CcchHHHHHHHHHhhcCCC-ccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHH
Q 008510          418 LPANLLTGIRAVTNLFKNS-SWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAAL  496 (563)
Q Consensus       418 ~~~~~ll~lR~l~N~f~~~-~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~  496 (563)
                      .+..+..++++|.|+..+. .......  ...++..+...+.+.+..++..++..+.|++.........-....++..++
T Consensus       228 ~~~v~~~a~~~L~~L~~~~~~~~~~~~--~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv  305 (530)
T 1wa5_B          228 KPSLIRTATWTLSNLCRGKKPQPDWSV--VSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLV  305 (530)
T ss_dssp             CHHHHHHHHHHHHHHHCCSSSCCCHHH--HGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHH
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCCcHHH--HHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHH
Confidence            3456677899999999764 2222211  233444555555566788999999999999853111000000113456667


Q ss_pred             HhhhhcccChhHHHHHHHHHhhhhc
Q 008510          497 EIAEEESIEVDSKYRALVAIGTLML  521 (563)
Q Consensus       497 ~~l~~~~~~~Ea~~R~l~AlG~l~~  521 (563)
                      +++.  ..+++.....+-+||+|..
T Consensus       306 ~lL~--~~~~~v~~~a~~~L~~l~~  328 (530)
T 1wa5_B          306 ELLS--HESTLVQTPALRAVGNIVT  328 (530)
T ss_dssp             HGGG--CSCHHHHHHHHHHHHHHTT
T ss_pred             HHHC--CCChhhHHHHHHHHHHHHc
Confidence            7774  3577888899999999987

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=85.92  E-value=4.3  Score=39.62  Aligned_cols=93  Identities=8%  Similarity=0.008  Sum_probs=58.7

Q ss_pred             EEEEECCCcEEEEcCC-CceeEEEe-c---CCCcEEEEEEcCCCeEEEEeCCCcEEEEc-CCceeEEEe----cCCcEEE
Q 008510            6 IISASHDCTIRLWALT-GQVLMEMV-G---HTAIVYSIDSHASGLIVSGSEDRFAKIWK-DGVCVQSIE----HPGCVWD   75 (563)
Q Consensus         6 l~s~s~DgtIrlWd~~-g~~i~~l~-g---H~~~V~~v~~~p~g~l~s~s~D~tvriWd-~~~~~~~l~----h~~~V~~   75 (563)
                      +..++.+|.+++++.+ |+....+. +   +...++++.+.+++.++.++.++.+..-. .++.-+.+.    ++..+++
T Consensus       218 ~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i~~S~DgG~tW~~~~~~~~~~~~~~~  297 (327)
T 2xbg_A          218 LWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGALLCSQDGGQTWQQDVDVKKVPSNFYK  297 (327)
T ss_dssp             EEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCEEEESSTTSSCEECGGGTTSSSCCCE
T ss_pred             EEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeEEEeCCCCcccEEcCccCCCCCCeEE
Confidence            4455667877777433 44332222 1   23458899998877555556688774333 455444444    2457889


Q ss_pred             EEEccCCcEEEEeCCCcEEEEEc
Q 008510           76 AKFLENGDIVTACSDGVTRIWTV   98 (563)
Q Consensus        76 v~~~p~g~i~sgs~Dg~Irvwd~   98 (563)
                      |.|.+++.++.++.+|.|.-++-
T Consensus       298 v~~~~~~~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          298 ILFFSPDQGFILGQKGILLRYVT  320 (327)
T ss_dssp             EEEEETTEEEEECSTTEEEEECC
T ss_pred             EEEECCCceEEEcCCceEEEEcC
Confidence            99987777888888998877664

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=85.84  E-value=8.1  Score=38.36  Aligned_cols=100  Identities=17%  Similarity=0.043  Sum_probs=63.5

Q ss_pred             chHHHHHHHHHhhcCCCcc-HHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhh-hhhcCCchhhhHHHHHHHH
Q 008510          420 ANLLTGIRAVTNLFKNSSW-YSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVL-LIEKKDEEGQSHVLSAALE  497 (563)
Q Consensus       420 ~~~ll~lR~l~N~f~~~~~-~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~-~~~~~~~~~~~~l~~~~~~  497 (563)
                      ..+.-+..+|.|+-..... +..+.. ..-++..+...+.+.+..+|..++..+.|+|.. ....+..-.....+..+++
T Consensus        99 ~~q~~Aa~aL~nLa~~~~~~k~~i~~-~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~  177 (354)
T 3nmw_A           99 TLRRYAGMALTNLTFGDVANKATLCS-MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALME  177 (354)
T ss_dssp             HHHHHHHHHHHHHTSSCHHHHHHHHH-CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHH-cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHH
Confidence            4467788899998877653 333322 223455555666678899999999999999863 1111111011223555566


Q ss_pred             hhhhcccChhHHHHHHHHHhhhhc
Q 008510          498 IAEEESIEVDSKYRALVAIGTLML  521 (563)
Q Consensus       498 ~l~~~~~~~Ea~~R~l~AlG~l~~  521 (563)
                      +|.+ ..++++....+-||++|..
T Consensus       178 lL~~-~~~~~~~~~A~~aL~nLs~  200 (354)
T 3nmw_A          178 CALE-VKKESTLKSVLSALWNLSA  200 (354)
T ss_dssp             HHHH-CCCHHHHHHHHHHHHHHHT
T ss_pred             HHhc-CCCHHHHHHHHHHHHHHHc
Confidence            6532 3467888888899999987

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=85.40  E-value=11  Score=38.42  Aligned_cols=68  Identities=15%  Similarity=0.169  Sum_probs=48.7

Q ss_pred             cEEEEEEcCCC-eEEEEeCCCcEEEEc--CCc----------e--eEEEe-------cCCcEEEEEEccCC---c-EEEE
Q 008510           34 IVYSIDSHASG-LIVSGSEDRFAKIWK--DGV----------C--VQSIE-------HPGCVWDAKFLENG---D-IVTA   87 (563)
Q Consensus        34 ~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~----------~--~~~l~-------h~~~V~~v~~~p~g---~-i~sg   87 (563)
                      .|..+..+|+| .++.. .+.+|.|-.  .+.          .  .+++.       .+..|..+.|+|-|   . +++-
T Consensus        67 ~i~qlvlSpsG~lLAl~-g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLF-NDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEE-CSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEe-cCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence            47789999999 55554 566888876  111          1  12333       13579999999954   2 8999


Q ss_pred             eCCCcEEEEEcCCCc
Q 008510           88 CSDGVTRIWTVHSDK  102 (563)
Q Consensus        88 s~Dg~Irvwd~~~~~  102 (563)
                      ..|++||+||+....
T Consensus       146 tsD~~Ir~yDl~~s~  160 (452)
T 3pbp_A          146 KEDDTITMFDILNSQ  160 (452)
T ss_dssp             ETTSCEEEEETTCTT
T ss_pred             ecCCEEEEEEcccCC
Confidence            999999999998743

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=85.29  E-value=2.7  Score=46.58  Aligned_cols=71  Identities=10%  Similarity=0.068  Sum_probs=44.4

Q ss_pred             cCCC-cEEEEEEc-CCC-eEE-EEeCCC----cEEEEc--CC-ceeE-EEecCCcEEEEEEccCCc-EEEEeCC-----C
Q 008510           30 GHTA-IVYSIDSH-ASG-LIV-SGSEDR----FAKIWK--DG-VCVQ-SIEHPGCVWDAKFLENGD-IVTACSD-----G   91 (563)
Q Consensus        30 gH~~-~V~~v~~~-p~g-~l~-s~s~D~----tvriWd--~~-~~~~-~l~h~~~V~~v~~~p~g~-i~sgs~D-----g   91 (563)
                      +|.- .+...+|+ ||| .++ +.+.+|    +|+++|  ++ +.+. .+.  ....+++|+|||+ |+....|     .
T Consensus       170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~--~~~~~~~WspDg~~l~y~~~d~~~~~~  247 (751)
T 2xe4_A          170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS--GTNGEIVWGPDHTSLFYVTKDETLREN  247 (751)
T ss_dssp             TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE--EECSCCEECSSTTEEEEEEECTTCCEE
T ss_pred             CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc--CceeeEEEecCCCEEEEEEECCCCCCC
Confidence            3443 67889999 999 544 333333    599999  55 4211 111  1234688999998 7666655     2


Q ss_pred             cEEEEEcCCCc
Q 008510           92 VTRIWTVHSDK  102 (563)
Q Consensus        92 ~Irvwd~~~~~  102 (563)
                      .|+++++.++.
T Consensus       248 ~v~~~~lgt~~  258 (751)
T 2xe4_A          248 KVWRHVMGKLQ  258 (751)
T ss_dssp             EEEEEETTSCG
T ss_pred             EEEEEECCCCc
Confidence            57778887654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=85.11  E-value=17  Score=34.23  Aligned_cols=98  Identities=13%  Similarity=0.040  Sum_probs=64.8

Q ss_pred             CCEEEEEECCCcEEEEcCCC----ceeEEEe-------cCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc-CCceeEEEe
Q 008510            3 GVGIISASHDCTIRLWALTG----QVLMEMV-------GHTAIVYSIDSHASG--LIVSGSEDRFAKIWK-DGVCVQSIE   68 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~~g----~~i~~l~-------gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd-~~~~~~~l~   68 (563)
                      ++.|..+.......+|.++|    ..+..+.       .+...+.+++++|..  .++.+.+.+.+-++| +++.+..+.
T Consensus       132 ~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~  211 (255)
T 3qqz_A          132 DHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMS  211 (255)
T ss_dssp             TTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEE
T ss_pred             CCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEE
Confidence            34555555554555555532    2222221       123456889999974  677777888999999 888777776


Q ss_pred             cC----------CcEEEEEEccCCcEEEEeCCCcEEEEEcCC
Q 008510           69 HP----------GCVWDAKFLENGDIVTACSDGVTRIWTVHS  100 (563)
Q Consensus        69 h~----------~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~  100 (563)
                      ..          ..--.|+|.++|++...|.-+.+++|...+
T Consensus       212 L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~~~~  253 (255)
T 3qqz_A          212 LTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFTPQS  253 (255)
T ss_dssp             CSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEEC--
T ss_pred             cCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEEecC
Confidence            22          156899999999977778888888876543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=84.81  E-value=1.4  Score=47.22  Aligned_cols=72  Identities=17%  Similarity=0.296  Sum_probs=50.4

Q ss_pred             CCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEecCCcEEE--EEEccCCc
Q 008510           12 DCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWD--AKFLENGD   83 (563)
Q Consensus        12 DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~--v~~~p~g~   83 (563)
                      +|.|.-||+ +|+.+.+...+...........++.++.++.|+.++.||  +|+.+..++.+..+.+  +.+..+|+
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~  541 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGE  541 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCE
Confidence            688999999 899887776433211111112345777799999999999  8999998885544433  66667887

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=84.77  E-value=22  Score=36.15  Aligned_cols=99  Identities=8%  Similarity=0.057  Sum_probs=59.3

Q ss_pred             CEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCC---Cc-EEEEc-CCcee--EEEecCCcEEE
Q 008510            4 VGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSED---RF-AKIWK-DGVCV--QSIEHPGCVWD   75 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D---~t-vriWd-~~~~~--~~l~h~~~V~~   75 (563)
                      ..|..+...+.|+.++.....+.++.+......+++++++| .+++....   +. +...+ .+...  ..+..-...+.
T Consensus       153 g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~g  232 (433)
T 4hw6_A          153 DDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKT  232 (433)
T ss_dssp             CEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCC
T ss_pred             CEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccccCCCCE
Confidence            34444444488999998433444555555678999999998 55554321   22 22233 22211  22322234567


Q ss_pred             EEEcc-CCcEEEE-eCCCcEEEEEcCCCc
Q 008510           76 AKFLE-NGDIVTA-CSDGVTRIWTVHSDK  102 (563)
Q Consensus        76 v~~~p-~g~i~sg-s~Dg~Irvwd~~~~~  102 (563)
                      +++.| +|.|..+ ..++.|+.+|..++.
T Consensus       233 iavd~~~G~lyv~d~~~~~V~~~d~~~g~  261 (433)
T 4hw6_A          233 CAVHPQNGKIYYTRYHHAMISSYDPATGT  261 (433)
T ss_dssp             CEECTTTCCEEECBTTCSEEEEECTTTCC
T ss_pred             EEEeCCCCeEEEEECCCCEEEEEECCCCe
Confidence            88999 7776544 456789999988665

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=84.66  E-value=32  Score=33.98  Aligned_cols=94  Identities=15%  Similarity=0.186  Sum_probs=64.4

Q ss_pred             EEEEEC--CCcEEEEcC--CCceeEEEec------CC-CcEEEEEE--cCC-C--eEEEEeCCCcEEEEc-----CC---
Q 008510            6 IISASH--DCTIRLWAL--TGQVLMEMVG------HT-AIVYSIDS--HAS-G--LIVSGSEDRFAKIWK-----DG---   61 (563)
Q Consensus         6 l~s~s~--DgtIrlWd~--~g~~i~~l~g------H~-~~V~~v~~--~p~-g--~l~s~s~D~tvriWd-----~~---   61 (563)
                      ++|.-.  +.+|++|++  ....+..+..      .. ..++.+|+  +|. +  +++....++.+..|+     .+   
T Consensus        90 ~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~  169 (355)
T 3amr_A           90 AASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYIS  169 (355)
T ss_dssp             EEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEE
T ss_pred             EEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCccc
Confidence            344444  678999966  3334555522      12 56788888  674 4  577888899999988     12   


Q ss_pred             -ceeEEEecCCcEEEEEEccC-CcEEEEeCCCcEEEEEcC
Q 008510           62 -VCVQSIEHPGCVWDAKFLEN-GDIVTACSDGVTRIWTVH   99 (563)
Q Consensus        62 -~~~~~l~h~~~V~~v~~~p~-g~i~sgs~Dg~Irvwd~~   99 (563)
                       +.++++..+..+-.+...+. |.|..+-.|.-|..|+.+
T Consensus       170 ~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~  209 (355)
T 3amr_A          170 GKKVRAFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAE  209 (355)
T ss_dssp             EEEEEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEECS
T ss_pred             ceEEEEecCCCCcceEEEcCCCCeEEEecccceEEEEeCC
Confidence             45677777778888888875 458899888777666755

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=84.58  E-value=14  Score=39.67  Aligned_cols=112  Identities=11%  Similarity=-0.006  Sum_probs=69.4

Q ss_pred             HHHHHHhhcCCCCCcchHHHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCC
Q 008510          405 LMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKD  484 (563)
Q Consensus       405 ~~~~l~~~~~~~~~~~~~ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~  484 (563)
                      +..++..+... ..+..+..++++|.|+..+...+..+...  .++..+...+.+.+..+|..++..+.|++........
T Consensus        58 i~~Lv~~L~~~-~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~  134 (644)
T 2z6h_A           58 VSAIVRTMQNT-NDVETARCTAGTLHNLSHHREGLLAIFKS--GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM  134 (644)
T ss_dssp             HHHHHHHHHSC-CCHHHHHHHHHHHHHHTTSHHHHHHHHTT--THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHH
T ss_pred             HHHHHHHHhcC-CCHHHHHHHHHHHHHHhcChhhHHHHHHc--CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHH
Confidence            44444444332 23456788899999988887766666543  4455566666677889999999999999875321111


Q ss_pred             chhhhHHHHHHHHhhhhcccChhHHHHHHHHHhhhhc
Q 008510          485 EEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLML  521 (563)
Q Consensus       485 ~~~~~~l~~~~~~~l~~~~~~~Ea~~R~l~AlG~l~~  521 (563)
                      .-.....+..+++.+..  .+++.....+-+|++|..
T Consensus       135 ~v~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~~La~  169 (644)
T 2z6h_A          135 AVRLAGGLQKMVALLNK--TNVKFLAITTDCLQILAY  169 (644)
T ss_dssp             HHHHTTHHHHHHHGGGC--CCHHHHHHHHHHHHHHHT
T ss_pred             HHHHCCChHHHHHHHCc--CCHHHHHHHHHHHHHHHh
Confidence            11112356666777753  344444444557888886

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=84.57  E-value=34  Score=34.02  Aligned_cols=99  Identities=11%  Similarity=-0.034  Sum_probs=64.2

Q ss_pred             CCEEEEEECCCcEEEEcCCCceeEEEe-cCCCcEEEEEEcCCC--eEEEEeCC-CcEEEEc-CCceeEEEec--CCcEEE
Q 008510            3 GVGIISASHDCTIRLWALTGQVLMEMV-GHTAIVYSIDSHASG--LIVSGSED-RFAKIWK-DGVCVQSIEH--PGCVWD   75 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~~g~~i~~l~-gH~~~V~~v~~~p~g--~l~s~s~D-~tvriWd-~~~~~~~l~h--~~~V~~   75 (563)
                      |..+++-...+.|.+.+++|.....+. ..-.....+++.|.+  .+++-... +.|...+ ++.....+..  -..-..
T Consensus       171 g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnG  250 (386)
T 3v65_B          171 DKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNG  250 (386)
T ss_dssp             TEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEE
T ss_pred             CeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeee
Confidence            445556566677888888665544443 333567899999864  45554444 6677777 6666555542  235788


Q ss_pred             EEEccCC-cE-EEEeCCCcEEEEEcCCC
Q 008510           76 AKFLENG-DI-VTACSDGVTRIWTVHSD  101 (563)
Q Consensus        76 v~~~p~g-~i-~sgs~Dg~Irvwd~~~~  101 (563)
                      +++.|++ +| ++-+..+.|..+|++..
T Consensus       251 lavd~~~~~lY~aD~~~~~I~~~d~dG~  278 (386)
T 3v65_B          251 LTIDYAGRRMYWVDAKHHVIERANLDGS  278 (386)
T ss_dssp             EEEEGGGTEEEEEETTTTEEEEECTTSC
T ss_pred             EEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence            9999754 45 45556678999998653

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=84.49  E-value=12  Score=35.53  Aligned_cols=101  Identities=10%  Similarity=0.085  Sum_probs=48.4

Q ss_pred             CCCEEEEEECCC-----cEEEEcCCCceeEEEecCC--CcEEEEEEcCCC-eEEEEeCC-------CcEEEEc-CCceeE
Q 008510            2 PGVGIISASHDC-----TIRLWALTGQVLMEMVGHT--AIVYSIDSHASG-LIVSGSED-------RFAKIWK-DGVCVQ   65 (563)
Q Consensus         2 ~g~~l~s~s~Dg-----tIrlWd~~g~~i~~l~gH~--~~V~~v~~~p~g-~l~s~s~D-------~tvriWd-~~~~~~   65 (563)
                      ++..++.||.++     .+.+||........+....  ..-.+++.. ++ .++.||.+       ..+.++| ....-.
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~  186 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV-GGLLYAVGGYDVASRQCLSTVECYNATTNEWT  186 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTTTEECCCEEEEETTTTEEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE-CCEEEEEeCCCCCCCccccEEEEEeCCCCcEE
Confidence            456677777654     4667777333222222111  111122222 45 55556543       3477777 333222


Q ss_pred             EEe---cCCcEEEEEEccCCc-EEEEeCC-----CcEEEEEcCCCcee
Q 008510           66 SIE---HPGCVWDAKFLENGD-IVTACSD-----GVTRIWTVHSDKVA  104 (563)
Q Consensus        66 ~l~---h~~~V~~v~~~p~g~-i~sgs~D-----g~Irvwd~~~~~~~  104 (563)
                      .+.   .+..-.++... ++. ++.|+.+     ..+.+||..+.+..
T Consensus       187 ~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~  233 (302)
T 2xn4_A          187 YIAEMSTRRSGAGVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNAWR  233 (302)
T ss_dssp             EECCCSSCCBSCEEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTEEE
T ss_pred             ECCCCccccccccEEEE-CCEEEEECCCCCCcccceEEEEeCCCCCEe
Confidence            332   22222222222 556 5666654     36888888877644

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=84.39  E-value=8.3  Score=41.59  Aligned_cols=100  Identities=11%  Similarity=0.023  Sum_probs=65.9

Q ss_pred             CcchHHHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhcc-CCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHH
Q 008510          418 LPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYS-SSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAAL  496 (563)
Q Consensus       418 ~~~~~ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~-~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~  496 (563)
                      .+..+.-++++|+|+-.+...+..+... ..++..+...+. +.+..+|..++..+.|++.... .+..-.....+..++
T Consensus        27 ~~~vr~~A~~~L~~La~~~~~~~~i~~~-~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~-~~~~i~~~g~i~~Lv  104 (644)
T 2z6h_A           27 DQVVVNKAAVMVHQLSKKEASRHAIMRS-PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE-GLLAIFKSGGIPALV  104 (644)
T ss_dssp             CHHHHHHHHHHHHHHHTSTTHHHHHTTC-HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHH-HHHHHHTTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHCCChhHHHHHhc-cChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh-hHHHHHHcCCHHHHH
Confidence            4566788999999998888766555432 233344444433 3477899999999999876422 111111123556667


Q ss_pred             HhhhhcccChhHHHHHHHHHhhhhc
Q 008510          497 EIAEEESIEVDSKYRALVAIGTLML  521 (563)
Q Consensus       497 ~~l~~~~~~~Ea~~R~l~AlG~l~~  521 (563)
                      +++.  ..+++..+..+.+|++|..
T Consensus       105 ~lL~--~~~~~v~~~A~~aL~nL~~  127 (644)
T 2z6h_A          105 KMLG--SPVDSVLFYAITTLHNLLL  127 (644)
T ss_dssp             HHTT--CSSHHHHHHHHHHHHHHHH
T ss_pred             HHHh--CCCHHHHHHHHHHHHHHHh
Confidence            7774  3578999999999999987

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=84.11  E-value=10  Score=42.13  Aligned_cols=100  Identities=12%  Similarity=0.031  Sum_probs=65.3

Q ss_pred             CcchHHHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhcc-CCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHH
Q 008510          418 LPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYS-SSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAAL  496 (563)
Q Consensus       418 ~~~~~ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~-~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~  496 (563)
                      .+..+--++++|.|+-.+...+..+.. ...++..+...+. ..+..+|..++..+.|++..-.. ...-.....+..++
T Consensus       163 d~~vr~~A~~~L~~L~~~~~~~~~i~~-~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~-~~~i~~~g~I~~Lv  240 (780)
T 2z6g_A          163 DQVVVNKAAVMVHQLSKKEASRHAIMR-SPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREG-LLAIFKSGGIPALV  240 (780)
T ss_dssp             CHHHHHHHHHHHHHHHTSHHHHHHHTT-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHH-HHHHHHTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhCCChhHHHHHh-ccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh-HHHHHHcCCHHHHH
Confidence            345678888999998887665554432 2234444444433 34788999999999998764211 11111223566677


Q ss_pred             HhhhhcccChhHHHHHHHHHhhhhc
Q 008510          497 EIAEEESIEVDSKYRALVAIGTLML  521 (563)
Q Consensus       497 ~~l~~~~~~~Ea~~R~l~AlG~l~~  521 (563)
                      +++.  ..+++..+-.+.+|++|..
T Consensus       241 ~lL~--~~~~~v~~~A~~aL~nLa~  263 (780)
T 2z6g_A          241 NMLG--SPVDSVLFHAITTLHNLLL  263 (780)
T ss_dssp             HHTT--CSCHHHHHHHHHHHHHHHH
T ss_pred             HHHc--CCCHHHHHHHHHHHHHHhC
Confidence            7774  3578999999999999987

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=83.97  E-value=4.6  Score=41.68  Aligned_cols=139  Identities=17%  Similarity=0.040  Sum_probs=80.5

Q ss_pred             cchHHHHHHHHHhhcCCCccH-HHHHh-hH--HHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHH
Q 008510          419 PANLLTGIRAVTNLFKNSSWY-SWLQK-NR--SEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSA  494 (563)
Q Consensus       419 ~~~~ll~lR~l~N~f~~~~~~-~~~~~-~~--~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~  494 (563)
                      +..+--++++|.|+-...... ..+.. ..  ..++..+...+.+.+..++..+++++-|++...  ..........+..
T Consensus       298 ~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~--~~~~~i~~~~i~~  375 (457)
T 1xm9_A          298 DATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP--LLHRVMGNQVFPE  375 (457)
T ss_dssp             HHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG--GGHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH--HHHHHHHHhhhHH
Confidence            455566799999998754321 11100 00  233455556666778899999999999998631  1111112234566


Q ss_pred             HHHhhhhcc----cChhHHHHHHHHHhhhhc-hhHHHHHhhhcChHHHHHHHhhcC-ChhHHHHHHHHHHH
Q 008510          495 ALEIAEEES----IEVDSKYRALVAIGTLML-EGLVKKIALDFDVGNIARVAKASK-ETKIAEVGADIELL  559 (563)
Q Consensus       495 ~~~~l~~~~----~~~Ea~~R~l~AlG~l~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~ei~~l  559 (563)
                      +++.|....    .++|++.-.+-+|++++. +++........|.-..+..+..+. ..++...|..++.-
T Consensus       376 Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~  446 (457)
T 1xm9_A          376 VTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSD  446 (457)
T ss_dssp             HHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence            677775421    235788899999999987 333333222222222223333455 66788777777653

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=83.96  E-value=35  Score=33.67  Aligned_cols=94  Identities=15%  Similarity=0.310  Sum_probs=64.4

Q ss_pred             CEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCC----C----e-EEEEeC--CCcEEEEc---CCceeEEEec
Q 008510            4 VGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHAS----G----L-IVSGSE--DRFAKIWK---DGVCVQSIEH   69 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~----g----~-l~s~s~--D~tvriWd---~~~~~~~l~h   69 (563)
                      ++++.....+-+.+||++|+.+..+.+  +.++.|.+-|+    |    . ++|.-.  +.+|++++   ....+..+..
T Consensus        41 s~ii~t~k~~gL~Vydl~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~  118 (355)
T 3amr_A           41 SKLITTNKKSGLVVYSLDGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD  118 (355)
T ss_dssp             CEEEEEETTTEEEEEETTSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred             cEEEEEcCCCCEEEEcCCCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence            456666777889999999999999864  56777777663    2    2 333333  57899995   3334555532


Q ss_pred             ---C-----CcEEEEEE--cc-CCc--EEEEeCCCcEEEEEcC
Q 008510           70 ---P-----GCVWDAKF--LE-NGD--IVTACSDGVTRIWTVH   99 (563)
Q Consensus        70 ---~-----~~V~~v~~--~p-~g~--i~sgs~Dg~Irvwd~~   99 (563)
                         +     ..+..+++  +| .|.  +.....+|.+..|++.
T Consensus       119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~  161 (355)
T 3amr_A          119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELK  161 (355)
T ss_dssp             TTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEE
T ss_pred             cccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEE
Confidence               2     45677777  66 454  5677778999999883

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=83.93  E-value=17  Score=37.29  Aligned_cols=120  Identities=13%  Similarity=0.102  Sum_probs=72.5

Q ss_pred             HHHHHHhhcCCCCCcchHHHHHHHHHhhcCC-CccHHHHHhh--HHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhh
Q 008510          405 LMEMIEKVSSNPTLPANLLTGIRAVTNLFKN-SSWYSWLQKN--RSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIE  481 (563)
Q Consensus       405 ~~~~l~~~~~~~~~~~~~ll~lR~l~N~f~~-~~~~~~~~~~--~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~  481 (563)
                      +..++..+.+  ..+..+.-++++|.|+-.+ +..+..+...  ...++..+..   +.+..++-.++..+.|+|.. ..
T Consensus        46 i~~Lv~lL~s--~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~---~~~~~~~~~a~~aL~nLa~~-~~  119 (457)
T 1xm9_A           46 ICKLVDLLRS--PNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRR---TGNAEIQKQLTGLLWNLSST-DE  119 (457)
T ss_dssp             HHHHHHHTTS--SCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTT---CCCHHHHHHHHHHHHHHHTS-SS
T ss_pred             HHHHHHHHcC--CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhh---CCCHHHHHHHHHHHHHHhcC-HH
Confidence            4444443332  3455678899999999886 5555555432  4444444421   45788999999999999975 22


Q ss_pred             cCCchhhhHHHHHHHHhhh--------hc------ccChhHHHHHHHHHhhhhchhHHHHHhhh
Q 008510          482 KKDEEGQSHVLSAALEIAE--------EE------SIEVDSKYRALVAIGTLMLEGLVKKIALD  531 (563)
Q Consensus       482 ~~~~~~~~~l~~~~~~~l~--------~~------~~~~Ea~~R~l~AlG~l~~~~~~~~~~~~  531 (563)
                      .+..-.. ..+..+++.+.        ..      ..+++.+...+-||++|...++.++....
T Consensus       120 ~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~  182 (457)
T 1xm9_A          120 LKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN  182 (457)
T ss_dssp             THHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTT
T ss_pred             hHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            1211112 45566667662        11      13566677788899999885444444443

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=83.65  E-value=35  Score=33.39  Aligned_cols=98  Identities=8%  Similarity=-0.019  Sum_probs=63.7

Q ss_pred             CEEEEEE-CCCcEEEEcCC-CceeEEEecC-----C--CcEEEEEE---cCCC-eEEEEe-------------CCCcEEE
Q 008510            4 VGIISAS-HDCTIRLWALT-GQVLMEMVGH-----T--AIVYSIDS---HASG-LIVSGS-------------EDRFAKI   57 (563)
Q Consensus         4 ~~l~s~s-~DgtIrlWd~~-g~~i~~l~gH-----~--~~V~~v~~---~p~g-~l~s~s-------------~D~tvri   57 (563)
                      ..|..++ ..++|..|+.. +........+     .  ..+..+.|   .|++ .++...             .++.|..
T Consensus        25 g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~  104 (334)
T 2p9w_A           25 QVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHS  104 (334)
T ss_dssp             TEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEE
T ss_pred             CEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEE
Confidence            4455555 79999999995 4433332222     1  14689999   5888 554332             2677888


Q ss_pred             Ec-C----CceeEEEec-------------C-CcEEEEEEccCCc-EEEEeCC-CcEEEEEcCCC
Q 008510           58 WK-D----GVCVQSIEH-------------P-GCVWDAKFLENGD-IVTACSD-GVTRIWTVHSD  101 (563)
Q Consensus        58 Wd-~----~~~~~~l~h-------------~-~~V~~v~~~p~g~-i~sgs~D-g~Irvwd~~~~  101 (563)
                      +| .    ++.+.....             . .....++..++|+ -++++.. +.|..++.+..
T Consensus       105 ~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~  169 (334)
T 2p9w_A          105 FNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK  169 (334)
T ss_dssp             EESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC
T ss_pred             EcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC
Confidence            99 6    666665541             1 2488999999999 5667777 77766666543

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=83.29  E-value=8.5  Score=38.90  Aligned_cols=100  Identities=15%  Similarity=0.102  Sum_probs=66.0

Q ss_pred             CcchHHHHHHHHHhhcCCCccHH-HHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHH
Q 008510          418 LPANLLTGIRAVTNLFKNSSWYS-WLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAAL  496 (563)
Q Consensus       418 ~~~~~ll~lR~l~N~f~~~~~~~-~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~  496 (563)
                      .+..+.-++++|.|+..+..... .+..  ..++..+...+.+.+..+|.+++..+-|++.........-....++..++
T Consensus       247 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~  324 (450)
T 2jdq_A          247 DYKVVSPALRAVGNIVTGDDIQTQVILN--CSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALI  324 (450)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHT--TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH
T ss_pred             chhHHHHHHHHHHHHhhCChHHHHHHHH--CccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH
Confidence            34567889999999988765432 2322  13555666666667889999999999999853111100000123556666


Q ss_pred             HhhhhcccChhHHHHHHHHHhhhhc
Q 008510          497 EIAEEESIEVDSKYRALVAIGTLML  521 (563)
Q Consensus       497 ~~l~~~~~~~Ea~~R~l~AlG~l~~  521 (563)
                      +.+.  ..+++.....+.+|+++..
T Consensus       325 ~~l~--~~~~~v~~~a~~~L~~l~~  347 (450)
T 2jdq_A          325 SILQ--TAEFRTRKEAAWAITNATS  347 (450)
T ss_dssp             HHHH--HSCHHHHHHHHHHHHHHHH
T ss_pred             HHHh--cCCHHHHHHHHHHHHHHHc
Confidence            7774  3577899999999999986

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=82.79  E-value=16  Score=34.55  Aligned_cols=100  Identities=9%  Similarity=0.020  Sum_probs=48.2

Q ss_pred             CCCEEEEEECC-----CcEEEEcC-CCc--eeEEEe---cCCCcEEEEEEcCCC-eEEEEeCCC-----cEEEEc-CCce
Q 008510            2 PGVGIISASHD-----CTIRLWAL-TGQ--VLMEMV---GHTAIVYSIDSHASG-LIVSGSEDR-----FAKIWK-DGVC   63 (563)
Q Consensus         2 ~g~~l~s~s~D-----gtIrlWd~-~g~--~i~~l~---gH~~~V~~v~~~p~g-~l~s~s~D~-----tvriWd-~~~~   63 (563)
                      ++..++.||.+     ..+.+||. +.+  ....+.   ..... .+++.. ++ .++.||.++     .+.++| ....
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~-~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~  139 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGL-AGATTL-GDMIYVSGGFDGSRRHTSMERYDPNIDQ  139 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBS-CEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccc-eeEEEE-CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence            45566777755     35788887 433  022221   11111 122222 45 666666543     466777 3322


Q ss_pred             eEEEe---cCCcEEEEEEccCCc-EEEEeCC-----CcEEEEEcCCCcee
Q 008510           64 VQSIE---HPGCVWDAKFLENGD-IVTACSD-----GVTRIWTVHSDKVA  104 (563)
Q Consensus        64 ~~~l~---h~~~V~~v~~~p~g~-i~sgs~D-----g~Irvwd~~~~~~~  104 (563)
                      -..+.   .+..-.+++. -++. ++.|+.+     ..+.+||..+.+..
T Consensus       140 W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~  188 (301)
T 2vpj_A          140 WSMLGDMQTAREGAGLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTGHWT  188 (301)
T ss_dssp             EEEEEECSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEE
T ss_pred             EEECCCCCCCcccceEEE-ECCEEEEECCCCCCcccceEEEEeCCCCcEE
Confidence            22222   2222222222 2566 5666654     45788888777643

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=82.72  E-value=22  Score=37.86  Aligned_cols=139  Identities=17%  Similarity=0.163  Sum_probs=81.4

Q ss_pred             CcchHHHHHHHHHhhcCCCccHH-HHHh--hHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHH
Q 008510          418 LPANLLTGIRAVTNLFKNSSWYS-WLQK--NRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSA  494 (563)
Q Consensus       418 ~~~~~ll~lR~l~N~f~~~~~~~-~~~~--~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~  494 (563)
                      .+..+-=+..+|.|+-....... .+..  .....+..+...+.+.+..++.+++.++-|++......  .......+..
T Consensus       322 ~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~--~~I~~g~ip~  399 (584)
T 3l6x_A          322 TPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNK--ELIGKHAIPN  399 (584)
T ss_dssp             CHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCH--HHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHH--HHHHhCCHHH
Confidence            34555667888888865432211 1111  12445666777777888899999999999998743211  1122345667


Q ss_pred             HHHhhhhcc------cChhHHHHHHHHHhhhhc-hhHHHHHhhhcC-hHHHHHHHhhc-CChhHHHHHHHHHH
Q 008510          495 ALEIAEEES------IEVDSKYRALVAIGTLML-EGLVKKIALDFD-VGNIARVAKAS-KETKIAEVGADIEL  558 (563)
Q Consensus       495 ~~~~l~~~~------~~~Ea~~R~l~AlG~l~~-~~~~~~~~~~~~-~~~~~~~~~~~-~~~~i~~~~~ei~~  558 (563)
                      +++.|....      .++|++.-.+-+|++|+. +.+..+.....+ ++.++.=++.+ ...++.+.|.-++.
T Consensus       400 LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~  472 (584)
T 3l6x_A          400 LVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQ  472 (584)
T ss_dssp             HHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHH
T ss_pred             HHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHH
Confidence            777775432      156899999999999987 333333222333 33333333322 24566666655543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=82.57  E-value=38  Score=33.09  Aligned_cols=99  Identities=12%  Similarity=-0.009  Sum_probs=65.6

Q ss_pred             CCEEEEEECCCcEEEEcCCCceeEEEe-cCCCcEEEEEEcCC-C-eEEEEeCC-CcEEEEc-CCceeEEEec--CCcEEE
Q 008510            3 GVGIISASHDCTIRLWALTGQVLMEMV-GHTAIVYSIDSHAS-G-LIVSGSED-RFAKIWK-DGVCVQSIEH--PGCVWD   75 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~~g~~i~~l~-gH~~~V~~v~~~p~-g-~l~s~s~D-~tvriWd-~~~~~~~l~h--~~~V~~   75 (563)
                      |..+++-...+.|.+.+++|.....+. ..-.....+++.|. | .+++-... +.|...+ ++.....+..  -..-..
T Consensus       128 g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnG  207 (349)
T 3v64_C          128 DKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNG  207 (349)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEE
T ss_pred             CeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcce
Confidence            455566666778888888766544443 33456789999985 4 55555544 6777777 7665555532  235788


Q ss_pred             EEEccCCc-E-EEEeCCCcEEEEEcCCC
Q 008510           76 AKFLENGD-I-VTACSDGVTRIWTVHSD  101 (563)
Q Consensus        76 v~~~p~g~-i-~sgs~Dg~Irvwd~~~~  101 (563)
                      +++.|++. | ++-...+.|..+|.+..
T Consensus       208 la~d~~~~~lY~aD~~~~~I~~~~~dG~  235 (349)
T 3v64_C          208 LTIDYAGRRMYWVDAKHHVIERANLDGS  235 (349)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             EEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence            99998554 5 45555678999998753

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=82.53  E-value=41  Score=33.41  Aligned_cols=95  Identities=8%  Similarity=-0.044  Sum_probs=62.2

Q ss_pred             EEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCC-C-eEEEEeCCCcEEEEc-CCceeEEEe-c-CCcEEEEEEccC
Q 008510            7 ISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHAS-G-LIVSGSEDRFAKIWK-DGVCVQSIE-H-PGCVWDAKFLEN   81 (563)
Q Consensus         7 ~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~-g-~l~s~s~D~tvriWd-~~~~~~~l~-h-~~~V~~v~~~p~   81 (563)
                      +..++...|+..++.+.....+.........++|++. + .+++-...+.|+.|+ .+.....+. . ......+++.+.
T Consensus        90 l~~~~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~  169 (386)
T 3v65_B           90 LLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWV  169 (386)
T ss_dssp             EEEECBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETT
T ss_pred             eEeecCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeC
Confidence            3344556789999855444444434456789999975 4 566666778898888 665554443 2 225567888874


Q ss_pred             -CcE-EEEeCCCcEEEEEcCCC
Q 008510           82 -GDI-VTACSDGVTRIWTVHSD  101 (563)
Q Consensus        82 -g~i-~sgs~Dg~Irvwd~~~~  101 (563)
                       +.| ++-...+.|.+++++..
T Consensus       170 ~g~lY~~d~~~~~I~~~~~dg~  191 (386)
T 3v65_B          170 HDKLYWTDSGTSRIEVANLDGA  191 (386)
T ss_dssp             TTEEEEEETTTTEEEECBTTSC
T ss_pred             CCeEEEEcCCCCeEEEEeCCCC
Confidence             444 55566778888888754

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=82.35  E-value=9.7  Score=39.27  Aligned_cols=136  Identities=15%  Similarity=0.040  Sum_probs=74.4

Q ss_pred             cchHHHHHHHHHhhcC-CCccHHHHHhhHHHHHHHhhhhccCCCh----hHHHHHHHHHHHHHhhhhhcCC---chhhhH
Q 008510          419 PANLLTGIRAVTNLFK-NSSWYSWLQKNRSEILDAFSSCYSSSNK----NVQLSYSTLILNYAVLLIEKKD---EEGQSH  490 (563)
Q Consensus       419 ~~~~ll~lR~l~N~f~-~~~~~~~~~~~~~~il~~~~~~~~~~~k----~~~~a~atl~~N~s~~~~~~~~---~~~~~~  490 (563)
                      +..+--++++|.|+-. ....+..+... .-.+..+...+...+.    .++..++.++.|++.+.....+   .-....
T Consensus       301 ~~v~~~A~~aL~nLs~~~~~nk~~I~~~-~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G  379 (458)
T 3nmz_A          301 ESTLKSVLSALWNLSAHCTENKADICAV-DGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENN  379 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHHHHS-TTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHccCCHHHHHHHHHh-cCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcc
Confidence            3445667888888877 33444444311 1223333333333332    3778888899999964222111   101122


Q ss_pred             HHHHHHHhhhhcccChhHHHHHHHHHhhhhc-hhHHHHHhhhcChHHHHHHHhhcCChhHHHHHHHHH
Q 008510          491 VLSAALEIAEEESIEVDSKYRALVAIGTLML-EGLVKKIALDFDVGNIARVAKASKETKIAEVGADIE  557 (563)
Q Consensus       491 l~~~~~~~l~~~~~~~Ea~~R~l~AlG~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ei~  557 (563)
                      .+..+++.+.  ..+.+.....+-||++|.. +.+..+.....|.-..+-.+..+...++++.+...+
T Consensus       380 ~i~~Lv~LL~--~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL  445 (458)
T 3nmz_A          380 CLQTLLQHLK--SHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAAL  445 (458)
T ss_dssp             HHHHHHHHSS--CSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHH
T ss_pred             cHHHHHHHHc--CCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence            4566677774  3567888999999999996 444444433334322332233355667666555444

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=81.80  E-value=15  Score=38.04  Aligned_cols=100  Identities=11%  Similarity=0.025  Sum_probs=64.6

Q ss_pred             CcchHHHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhc-cCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHH
Q 008510          418 LPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCY-SSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAAL  496 (563)
Q Consensus       418 ~~~~~ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~-~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~  496 (563)
                      .+..+.-++++|.|+-.+...+..+... ..++..+...+ .+.+..+|..++..+.|++..-. .+..-.....+..++
T Consensus        30 ~~~v~~~A~~~L~~l~~~~~~~~~~~~~-~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~g~i~~L~  107 (529)
T 1jdh_A           30 DQVVVNKAAVMVHQLSKKEASRHAIMRS-PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE-GLLAIFKSGGIPALV  107 (529)
T ss_dssp             CHHHHHHHHHHHHHHHTSHHHHHHHHTC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHH-HHHHHHHTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCccHHHHHhC-cchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCch-hHHHHHHcCCHHHHH
Confidence            4566788999999998887766555432 12233333333 23477899999999999875311 111111123456667


Q ss_pred             HhhhhcccChhHHHHHHHHHhhhhc
Q 008510          497 EIAEEESIEVDSKYRALVAIGTLML  521 (563)
Q Consensus       497 ~~l~~~~~~~Ea~~R~l~AlG~l~~  521 (563)
                      +++.  ..+++..+..+.+|++|..
T Consensus       108 ~lL~--~~~~~v~~~a~~~L~~l~~  130 (529)
T 1jdh_A          108 KMLG--SPVDSVLFYAITTLHNLLL  130 (529)
T ss_dssp             HHTT--CSCHHHHHHHHHHHHHHHH
T ss_pred             HHHc--CCCHHHHHHHHHHHHHHhc
Confidence            7774  3578999999999999987

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=81.61  E-value=15  Score=38.08  Aligned_cols=100  Identities=12%  Similarity=-0.041  Sum_probs=65.0

Q ss_pred             CcchHHHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHH
Q 008510          418 LPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALE  497 (563)
Q Consensus       418 ~~~~~ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~~  497 (563)
                      .+..+..++++|.|+..++..+..+...  ..+..+...+.+.+..+|..++..+.|++......+..-.....+..+++
T Consensus        73 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~--g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~  150 (529)
T 1jdh_A           73 DVETARCTAGTLHNLSHHREGLLAIFKS--GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVA  150 (529)
T ss_dssp             CHHHHHHHHHHHHHHTTSHHHHHHHHHT--THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCchhHHHHHHc--CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHH
Confidence            3456788999999998887766655542  34555555666678889999999999998752221111112335666677


Q ss_pred             hhhhcccChhHHHHHHHHHhhhhc
Q 008510          498 IAEEESIEVDSKYRALVAIGTLML  521 (563)
Q Consensus       498 ~l~~~~~~~Ea~~R~l~AlG~l~~  521 (563)
                      ++..  .+.+...-.+-+|++|..
T Consensus       151 ll~~--~~~~~~~~~~~~L~~la~  172 (529)
T 1jdh_A          151 LLNK--TNVKFLAITTDCLQILAY  172 (529)
T ss_dssp             GGGC--CCHHHHHHHHHHHHHHHT
T ss_pred             HHhc--CCHHHHHHHHHHHHHHHh
Confidence            7743  455555555568888876

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=81.47  E-value=5.1  Score=37.23  Aligned_cols=114  Identities=11%  Similarity=0.093  Sum_probs=66.2

Q ss_pred             HHHHHHhhcCCCCCcchHHHHHHHHHhhc-CCCccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcC
Q 008510          405 LMEMIEKVSSNPTLPANLLTGIRAVTNLF-KNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKK  483 (563)
Q Consensus       405 ~~~~l~~~~~~~~~~~~~ll~lR~l~N~f-~~~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~  483 (563)
                      +..++..+.+++..+..+..+.+.+.|+- .++..+..+...  -.+..+...+.+.+..+|-.++..+.|+|.-....+
T Consensus        10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~--G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A           10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQL--RGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHT--THHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHc--CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            44455444443222244567888888866 455556555432  123455555667889999999999999987422221


Q ss_pred             CchhhhHHHHHHHHhhhhcccChhHHHHHHHHHhhhhc
Q 008510          484 DEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLML  521 (563)
Q Consensus       484 ~~~~~~~l~~~~~~~l~~~~~~~Ea~~R~l~AlG~l~~  521 (563)
                      ..-.....+..+++++.. ..+.|+......||.+|..
T Consensus        88 ~~I~~~GaI~~Lv~lL~~-~~~~~~~e~a~~aL~nLS~  124 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQ-TRDLETKKQITGLLWNLSS  124 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHcc-CCCHHHHHHHHHHHHHHHc
Confidence            111111234555666642 2456776666677777765

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=81.40  E-value=8.5  Score=38.88  Aligned_cols=99  Identities=15%  Similarity=0.003  Sum_probs=62.4

Q ss_pred             CcchHHHHHHHHHhhcCCC-cc-HHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHH
Q 008510          418 LPANLLTGIRAVTNLFKNS-SW-YSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAA  495 (563)
Q Consensus       418 ~~~~~ll~lR~l~N~f~~~-~~-~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~  495 (563)
                      .+..+..++++|.|+..+. .. ...+   ...++..+...+.+.+..++..++..+-|++.........-....++..+
T Consensus       163 ~~~v~~~a~~~L~~l~~~~~~~~~~~~---~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L  239 (450)
T 2jdq_A          163 RLTMTRNAVWALSNLCRGKSPPPEFAK---VSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRL  239 (450)
T ss_dssp             CHHHHHHHHHHHHHHHCCSSSCCCGGG---TGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHH
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCCCHHH---HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHH
Confidence            4566788999999998764 21 1111   12344444444556678899999999999875321110000112345666


Q ss_pred             HHhhhhcccChhHHHHHHHHHhhhhc
Q 008510          496 LEIAEEESIEVDSKYRALVAIGTLML  521 (563)
Q Consensus       496 ~~~l~~~~~~~Ea~~R~l~AlG~l~~  521 (563)
                      ++.+.  ..+++.....+.+||+|..
T Consensus       240 ~~ll~--~~~~~v~~~a~~~L~~l~~  263 (450)
T 2jdq_A          240 VELLM--HNDYKVVSPALRAVGNIVT  263 (450)
T ss_dssp             HHHTT--CSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHC--CCchhHHHHHHHHHHHHhh
Confidence            67774  4578899999999999987

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=81.06  E-value=41  Score=32.44  Aligned_cols=99  Identities=11%  Similarity=-0.048  Sum_probs=64.6

Q ss_pred             CCEEEEEECCCcEEEEcCCCceeEEEe-cCCCcEEEEEEcCC-C-eEEEE-eCCCcEEEEc-CCceeEEEec--CCcEEE
Q 008510            3 GVGIISASHDCTIRLWALTGQVLMEMV-GHTAIVYSIDSHAS-G-LIVSG-SEDRFAKIWK-DGVCVQSIEH--PGCVWD   75 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~~g~~i~~l~-gH~~~V~~v~~~p~-g-~l~s~-s~D~tvriWd-~~~~~~~l~h--~~~V~~   75 (563)
                      |..+++-...+.|.+++++|.....+. ........+++.|. | .+++- +..+.|...+ +|.....+..  -..-..
T Consensus        91 g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Png  170 (318)
T 3sov_A           91 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNG  170 (318)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEE
T ss_pred             CeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccE
Confidence            445555556778888888776555543 34456789999986 4 44443 2346677667 6665555542  235689


Q ss_pred             EEEccCCc-E-EEEeCCCcEEEEEcCCC
Q 008510           76 AKFLENGD-I-VTACSDGVTRIWTVHSD  101 (563)
Q Consensus        76 v~~~p~g~-i-~sgs~Dg~Irvwd~~~~  101 (563)
                      +++.|++. | ++-+..+.|..+|.+..
T Consensus       171 lavd~~~~~lY~aD~~~~~I~~~d~dG~  198 (318)
T 3sov_A          171 LTLDYEEQKLYWADAKLNFIHKSNLDGT  198 (318)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             EEEeccCCEEEEEECCCCEEEEEcCCCC
Confidence            99998554 5 45556788999998753

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=80.65  E-value=51  Score=33.30  Aligned_cols=67  Identities=9%  Similarity=0.068  Sum_probs=46.4

Q ss_pred             cEEEEEEcC-CC-eEEEEeCCCcEEEEc-CCcee-EEEecC--CcEEEEEEccCCc-E-EEEeCCCcEEEEEcCC
Q 008510           34 IVYSIDSHA-SG-LIVSGSEDRFAKIWK-DGVCV-QSIEHP--GCVWDAKFLENGD-I-VTACSDGVTRIWTVHS  100 (563)
Q Consensus        34 ~V~~v~~~p-~g-~l~s~s~D~tvriWd-~~~~~-~~l~h~--~~V~~v~~~p~g~-i-~sgs~Dg~Irvwd~~~  100 (563)
                      ...+++++| +| .+++-..++.|..++ .+... ......  ..-..++|+|+|+ + ++-...+.|+.|+.+.
T Consensus       227 ~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          227 NCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             SCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             CceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence            356788999 67 566666678888888 55444 323322  3577899999998 5 4445678899988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	563
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-15
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-09
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-05
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.001
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	8e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	8e-09
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.002
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.003
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	8e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	6e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-05

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.5 bits (184), Expect = 1e-15
 Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 6/101 (5%)

Query: 2   PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIW- 58
           PG  ++S S D TI++W + TG  LM +VGH   V  +  H+ G  I+S ++D+  ++W 
Sbjct: 216 PGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD 275

Query: 59  -KDGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIW 96
            K+  C++++  H   V    F +    +VT   D   ++W
Sbjct: 276 YKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.7 bits (135), Expect = 2e-09
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 6   IISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK 59
           I+S + D T+R+W     + +  +  H   V S+D H +   +V+GS D+  K+W+
Sbjct: 262 ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.2 bits (126), Expect = 3e-08
 Identities = 29/129 (22%), Positives = 50/129 (38%), Gaps = 26/129 (20%)

Query: 6   IISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSID---------------------SHAS 43
           I S S+D T+R+W + T +   E+  H  +V  I                          
Sbjct: 158 IASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPG 217

Query: 44  GLIVSGSEDRFAKIW--KDGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVH 99
             ++SGS D+  K+W    G+C+ ++  H   V    F   G  I++   D   R+W   
Sbjct: 218 PFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK 277

Query: 100 SDKVADSLE 108
           + +   +L 
Sbjct: 278 NKRCMKTLN 286

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 16 RLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIW--KDGVCVQSIE-HPG 71
          + W         + GH + V  +  H    ++VS SED   K+W  + G   ++++ H  
Sbjct: 1  KEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTD 60

Query: 72 CVWD 75
           V D
Sbjct: 61 SVQD 64

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.8 bits (99), Expect = 7e-05
 Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 6/108 (5%)

Query: 6   IISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKDGVCV 64
           ++SAS D TI++W   TG     + GHT  V  I    SG +++           D    
Sbjct: 32  MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF 91

Query: 65  QSIE-----HPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSL 107
           + I             +       IV+A  D   ++W V +     + 
Sbjct: 92  ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF 139

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.7 bits (143), Expect = 2e-10
 Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 8/102 (7%)

Query: 3   GVGIISASHDCTIRLWALTGQVLMEMVGHTAI---VYSIDSHASG-LIVSGSEDRFAKIW 58
           G    + S D T RL+ L     +    H  I   + S+    SG L+++G +D    +W
Sbjct: 238 GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW 297

Query: 59  --KDGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIW 96
                     +  H   V      ++G  + T   D   +IW
Sbjct: 298 DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.7 bits (143), Expect = 2e-10
 Identities = 18/110 (16%), Positives = 41/110 (37%), Gaps = 8/110 (7%)

Query: 7   ISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWKDGVCV 64
           +S + D + +LW +  G       GH + + +I    +G    +GS+D   +++      
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259

Query: 65  QSIEHPGC-----VWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLE 108
           + + +        +    F ++G  ++    D    +W       A  L 
Sbjct: 260 ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (140), Expect = 5e-10
 Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 4/92 (4%)

Query: 11  HDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIW--KDGVCVQSI 67
               + +  +      ++  H + V S+     G   VS  +D     W    G  +   
Sbjct: 244 ESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS 303

Query: 68  EHPGCVWDAKFLENGD-IVTACSDGVTRIWTV 98
           +    V       +   IVT   D    ++ V
Sbjct: 304 KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 4e-08
 Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 6   IISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK 59
            +S   D  +  W       +     ++ V S D       IV+GS D+ A +++
Sbjct: 280 FVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 3e-04
 Identities = 12/70 (17%), Positives = 19/70 (27%), Gaps = 4/70 (5%)

Query: 35  VYSIDSHASG--LIVSGSEDRFAK--IWKDGVCVQSIEHPGCVWDAKFLENGDIVTACSD 90
            YS    A G    V    D      I +    + ++ H   V           V     
Sbjct: 12  AYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGK 71

Query: 91  GVTRIWTVHS 100
           G  ++W +  
Sbjct: 72  GCVKVWDISH 81

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 11/102 (10%), Positives = 25/102 (24%), Gaps = 10/102 (9%)

Query: 7   ISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIW--KDGVC 63
           +    D  I          +  + H  +V ++        + +G      K+W       
Sbjct: 26  VPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGN 84

Query: 64  VQSI------EHPGCVWDAKFLENGDIVTACSDGVTRIWTVH 99
              +           +   K L +G  +    +  T      
Sbjct: 85  KSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDL 126

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.6 bits (137), Expect = 2e-09
 Identities = 22/109 (20%), Positives = 47/109 (43%), Gaps = 7/109 (6%)

Query: 6   IISASHDCTIRLW-ALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKDGVCV 64
           +I+ + D  IR++ ++  + L+++ GH   V+++     G++VSGS DR  ++W      
Sbjct: 26  VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGC 85

Query: 65  QSIEHPGCVWDAKFLENGDI------VTACSDGVTRIWTVHSDKVADSL 107
            +    G     + L+  +       VT   D    +W +  +      
Sbjct: 86  CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDH 134

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (120), Expect = 2e-07
 Identities = 6/59 (10%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 2   PGVGIISASHDCTIRLWAL-TGQVL-MEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIW 58
               I+ +  +    ++ L +G+++   ++     ++S++     L+ +  +D  + + 
Sbjct: 292 VSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.3 bits (118), Expect = 3e-07
 Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 3/74 (4%)

Query: 30  GHTAIVYSIDSHASGLIVSGSEDRFAKIW--KDGVCVQSIE-HPGCVWDAKFLENGDIVT 86
           GH   V +        +++G++D+  +++   +   +  +  H G VW  K+   G +V+
Sbjct: 10  GHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVS 69

Query: 87  ACSDGVTRIWTVHS 100
             +D   R+W +  
Sbjct: 70  GSTDRTVRVWDIKK 83

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.1 bits (115), Expect = 8e-07
 Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 4/94 (4%)

Query: 7   ISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIW--KDGVCV 64
           +SA+ D +IR W            HT +      + S  I+    +    I+  + G  V
Sbjct: 257 VSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLV 316

Query: 65  QSI--EHPGCVWDAKFLENGDIVTACSDGVTRIW 96
            +   +    +W   F     +     DG + + 
Sbjct: 317 HANILKDADQIWSVNFKGKTLVAAVEKDGQSFLE 350

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.6 bits (129), Expect = 8e-09
 Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 3   GVGIISASHDCTIRLWAL--TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK 59
              + + S D  I ++++    +++  +  H   V ++       +VS   D   K W 
Sbjct: 227 EDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.7 bits (119), Expect = 1e-07
 Identities = 11/77 (14%), Positives = 28/77 (36%), Gaps = 4/77 (5%)

Query: 26  MEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIW---KDGVCVQSIE-HPGCVWDAKFLEN 81
                      + +     L+ +GS D    I+   +    ++++  H   V +  +   
Sbjct: 210 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP 269

Query: 82  GDIVTACSDGVTRIWTV 98
             +V++ +D   + W V
Sbjct: 270 STLVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.7 bits (93), Expect = 3e-04
 Identities = 12/79 (15%), Positives = 27/79 (34%), Gaps = 5/79 (6%)

Query: 21 TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKDGVCVQSIEHPGCVWDAKFLE 80
            +VL  + GH   + ++  +    ++SGS D     W      Q   H   +      +
Sbjct: 2  HDEVLKTISGHNKGITALTVNP---LISGSYDGRIMEWSSSSMHQD--HSNLIVSLDNSK 56

Query: 81 NGDIVTACSDGVTRIWTVH 99
            +  +   D   ++  + 
Sbjct: 57 AQEYSSISWDDTLKVNGIT 75

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.4 bits (87), Expect = 0.002
 Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 8/94 (8%)

Query: 6   IISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKDGVCVQ 65
           +IS S+D  I  W+ +         H+ ++ S+D+  +    S S D   K+      + 
Sbjct: 24  LISGSYDGRIMEWSSSSM----HQDHSNLIVSLDNSKAQEYSSISWDDTLKVN----GIT 75

Query: 66  SIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVH 99
             E       A    +G      +D    I    
Sbjct: 76  KHEFGSQPKVASANNDGFTAVLTNDDDLLILQSF 109

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.6 bits (127), Expect = 3e-08
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 8/62 (12%)

Query: 6   IISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSID-------SHASGLIVSGSEDRFAKI 57
           I+S S D  +  W   +G  L+ + GH   V S+             +  +GS D  A+I
Sbjct: 323 ILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382

Query: 58  WK 59
           WK
Sbjct: 383 WK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.3 bits (126), Expect = 4e-08
 Identities = 26/117 (22%), Positives = 41/117 (35%), Gaps = 24/117 (20%)

Query: 6   IISASHDCTIRLWALTG-------------QVLMEMVGHTAIVYSIDSHASG-LIVSGSE 51
           ++S S D +++LW L                  +  +GH   V S+ +  +   I+SGS+
Sbjct: 269 VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK 328

Query: 52  DRFAKIW--KDGVCVQSIE-HPGCVWDAKFLENGD-------IVTACSDGVTRIWTV 98
           DR    W  K G  +  ++ H   V                   T   D   RIW  
Sbjct: 329 DRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.8 bits (117), Expect = 4e-07
 Identities = 32/132 (24%), Positives = 44/132 (33%), Gaps = 25/132 (18%)

Query: 2   PGVGIISASHDCTIRLWALTGQVLME--------MVGHTAIVYSIDSHASG-LIVSGSED 52
            G  I + S D  +R+W      L+E          GH   VYS+     G  +VSGS D
Sbjct: 216 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD 275

Query: 53  RFAKIW---------------KDGVCVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIW 96
           R  K+W                    V  I H   V      +N + I++   D     W
Sbjct: 276 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW 335

Query: 97  TVHSDKVADSLE 108
              S      L+
Sbjct: 336 DKKSGNPLLMLQ 347

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.3 bits (95), Expect = 3e-04
 Identities = 13/91 (14%), Positives = 36/91 (39%), Gaps = 7/91 (7%)

Query: 32  TAIVYSIDSHASGLIVSGSEDRFAKIWK-------DGVCVQSIEHPGCVWDAKFLENGDI 84
              +  +DS +    +    + +  ++        D    +S++H   V   KF  +G+ 
Sbjct: 17  PPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEY 76

Query: 85  VTACSDGVTRIWTVHSDKVADSLELEAYASE 115
           +    +  T+++ V    +   L  ++ A++
Sbjct: 77  LATGCNKTTQVYRVSDGSLVARLSDDSAANK 107

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 3e-08
 Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 13/103 (12%)

Query: 6   IISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIW------- 58
           ++S S D TIRLW +     + ++     +       +  IVSG+ D   K+W       
Sbjct: 191 VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALD 250

Query: 59  ----KDGVCVQSIE-HPGCVWDAKFLENGDIVTACSDGVTRIW 96
                  +C++++  H G V+  +F E   IV++  D    IW
Sbjct: 251 PRAPAGTLCLRTLVEHSGRVFRLQFDEFQ-IVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (115), Expect = 5e-07
 Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 4/101 (3%)

Query: 5   GIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIW--KDG 61
            I+SAS D TI++W   T + +  + GH   +     +   L+VSGS D   ++W  + G
Sbjct: 150 YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIA-CLQYRDRLVVSGSSDNTIRLWDIECG 208

Query: 62  VCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDK 102
            C++ +E    +      +N  IV+   DG  ++W + +  
Sbjct: 209 ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAAL 249

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 2/93 (2%)

Query: 6   IISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSID-SHASGLIVSGSEDRFAKIWKDGVC 63
           I+S   D TI++W   T +    + GHT  V  +       +  S            G  
Sbjct: 28  IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEM 87

Query: 64  VQSIEHPGCVWDAKFLENGDIVTACSDGVTRIW 96
           + ++ H           NG +VT   D    +W
Sbjct: 88  LNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVW 120

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.003
 Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 4/59 (6%)

Query: 23 QVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIW--KDGVCVQSIE-HPGCVWDAKF 78
          Q +      +  VY +       IVSG  D   KIW      C + +  H G V   ++
Sbjct: 6  QRIHCRSETSKGVYCLQYD-DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY 63

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 50.8 bits (119), Expect = 2e-07
 Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 5/87 (5%)

Query: 22  GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIW--KDGVCVQSIE--HPGCVWDA 76
           G +     GH   + ++ S A G  + S   +     W    G+  +     H   +   
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61

Query: 77  KFLENGDIVTACSDGVTRIWTVHSDKV 103
           K    GD+ T   D   ++       V
Sbjct: 62  KTTSKGDLFTVSWDDHLKVVPAGGSGV 88

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.4 bits (113), Expect = 8e-07
 Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 6   IISASHDCTIRLWALTG----QVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIW 58
           + + S D ++ +W +       ++++     + V S+       IVS  +D   K W
Sbjct: 239 LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.4 bits (92), Expect = 4e-04
 Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 6/59 (10%)

Query: 46  IVSGSEDRFAKIW------KDGVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTV 98
           + +GS D    +W         + ++       V    +L    IV+A  D   + W V
Sbjct: 239 LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.0 bits (91), Expect = 5e-04
 Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 8/102 (7%)

Query: 6   IISASHDCTIRLWAL-TGQVLMEMV-GHTAIVYSIDSHASGLIVSGSEDRFAKIWK---- 59
           + SA  +  I  W + TG         H  ++  I + + G + + S D   K+      
Sbjct: 27  LFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGS 86

Query: 60  --DGVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVH 99
             D     + +            +GDI  A       I++  
Sbjct: 87  GVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG 128

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.7 bits (119), Expect = 2e-07
 Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 1   MPGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVY----SIDSHASGLIVSGSEDRFA 55
           +      +   D TIR+W + T + + +       +      + +  +G I+S S D   
Sbjct: 261 LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTL 320

Query: 56  KIWK 59
             ++
Sbjct: 321 NFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.0 bits (99), Expect = 6e-05
 Identities = 10/80 (12%), Positives = 24/80 (30%), Gaps = 7/80 (8%)

Query: 26  MEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIW--KDGVCVQSIE---HPGCVWDAKFLE 80
            +       ++++    S    +   D   ++W      CVQ                + 
Sbjct: 246 DDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA 305

Query: 81  NGD--IVTACSDGVTRIWTV 98
            G+  I++   DG    + +
Sbjct: 306 TGNGRIISLSLDGTLNFYEL 325

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 5e-07
 Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 9/114 (7%)

Query: 1   MPGVGIISASHDCTIRLWALT-GQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK 59
             G+ ++S S D +IR+W +  G  +  + GH ++   ++     ++VSG+ D   KIW 
Sbjct: 185 FDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK-DNILVSGNADSTVKIWD 243

Query: 60  ------DGVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSL 107
                         +H   V   +F +N  I T+  DG  ++W + + +   +L
Sbjct: 244 IKTGQCLQTLQGPNKHQSAVTCLQFNKNFVI-TSSDDGTVKLWDLKTGEFIRNL 296

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 2e-06
 Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 3/82 (3%)

Query: 21 TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIW--KDGVCVQSIE-HPGCVWDAK 77
            +    + GH   V +        IVSGS+D   K+W    G C++++  H G VW ++
Sbjct: 5  ELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ 64

Query: 78 FLENGDIVTACSDGVTRIWTVH 99
            +N  I  +    +       
Sbjct: 65 MRDNIIISGSTDRTLKVWNAET 86

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 5e-05
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 6  IISASHDCTIRLW-ALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKDGVCV 64
          I+S S D T+++W A+TG+ L  +VGHT  V+S     + +I   ++        +    
Sbjct: 30 IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGEC 89

Query: 65 QSIEHPGCVW 74
              +     
Sbjct: 90 IHTLYGHTST 99

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 1e-04
 Identities = 16/96 (16%), Positives = 41/96 (42%), Gaps = 2/96 (2%)

Query: 6   IISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIW--KDGVC 63
           ++S ++D  +++W    +  +  +                +VSGS D   ++W  + G C
Sbjct: 150 VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNC 209

Query: 64  VQSIEHPGCVWDAKFLENGDIVTACSDGVTRIWTVH 99
           + ++     +     L++  +V+  +D   +IW + 
Sbjct: 210 IHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIK 245

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 2e-04
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 11/63 (17%)

Query: 7   ISASHDCTIRLWAL-TGQVL-----MEMVGHTAIVYSIDSHASGLIVS-----GSEDRFA 55
           I++S D T++LW L TG+ +     +E  G   +V+ I +  + L+ +     G+E+   
Sbjct: 274 ITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKL 333

Query: 56  KIW 58
            + 
Sbjct: 334 LVL 336

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.5 bits (116), Expect = 6e-07
 Identities = 24/125 (19%), Positives = 37/125 (29%), Gaps = 20/125 (16%)

Query: 6   IISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSI-DSHASGLIVSGSEDRFAKIWKDGVC 63
           +++A HDC   L+   +    +   G   +         +      + D+ A        
Sbjct: 257 LVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAA 316

Query: 64  VQSIE--HPGCVWDAKFLENGD-----IVTACSDGVTRIWTVHSDKVADSLELEAYASEL 116
              ++  H   V     L  G        T   DG   IW V       SLE     S L
Sbjct: 317 GAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV------RSLE-----SAL 365

Query: 117 SQYKL 121
              K+
Sbjct: 366 KDLKI 370

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.5 bits (116), Expect = 7e-07
 Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 4/73 (5%)

Query: 6  IISASHDCTIRLWALTG---QVLMEMVGHTAIVYSID-SHASGLIVSGSEDRFAKIWKDG 61
          I    ++  + ++  +G     + E+  H   V  +D +  S  IV+   DR A +W   
Sbjct: 22 IAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 81

Query: 62 VCVQSIEHPGCVW 74
                       
Sbjct: 82 GRTWKPTLVILRI 94

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.4 bits (95), Expect = 2e-04
 Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 10/79 (12%)

Query: 31 HTAIVYSIDSHA----SGLIVSGSEDRFAKIW----KDGVCVQSIE-HPGCVWDAKFLEN 81
          H+ +V  I  HA       I     +    I+       V V  ++ H G V    +  +
Sbjct: 3  HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD 62

Query: 82 GD-IVTACSDGVTRIWTVH 99
           + IVT  +D    +WT+ 
Sbjct: 63 SNRIVTCGTDRNAYVWTLK 81

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.8 bits (109), Expect = 3e-06
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 6   IISASHDCTIRLWAL-TGQVLMEMVGHTAI-VYSIDSHASG-LIVSGSEDRFAKIW 58
           I SAS D TI++W + T +V   +   T I    +    +   +VS S + F    
Sbjct: 253 IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.0 bits (99), Expect = 5e-05
 Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 5/57 (8%)

Query: 45  LIVSGSEDRFAKIW--KDGVCVQSIEHPGCVWDA--KFLENGD-IVTACSDGVTRIW 96
            I S S D+  KIW        ++I     + D     +     +V+  ++G     
Sbjct: 252 KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.6 bits (106), Expect = 1e-05
 Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 11/85 (12%)

Query: 26 MEMV----GHTAIVYSID-SHASGLIVSGSEDRFAKIW------KDGVCVQSIEHPGCVW 74
          M++V         +  I    +  L++  S D    ++      K+   +QS+ +   + 
Sbjct: 1  MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL 60

Query: 75 DAKFLENGDIVTACSDGVTRIWTVH 99
             F++N D+          I  V 
Sbjct: 61 CCNFIDNTDLQIYVGTVQGEILKVD 85

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.9 bits (99), Expect = 7e-05
 Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 4/78 (5%)

Query: 6   IISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWKDGVCV 64
           + +A  D  I  W L T + +              + +  ++   + D   K        
Sbjct: 266 LYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTN--AAID 323

Query: 65  QSIE-HPGCVWDAKFLEN 81
           Q+IE +   ++     EN
Sbjct: 324 QTIELNASSIYIIFDYEN 341

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 4e-04
 Identities = 6/75 (8%), Positives = 20/75 (26%), Gaps = 6/75 (8%)

Query: 6   IISASHDCTIRLWALTGQ----VLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK 59
           ++  S D ++ ++    Q     L++ + +   +   +   +    I  G+         
Sbjct: 26  LLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85

Query: 60  DGVCVQSIEHPGCVW 74
                          
Sbjct: 86  LIGSPSFQALTNNEA 100

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 3e-05
 Identities = 20/131 (15%), Positives = 39/131 (29%), Gaps = 34/131 (25%)

Query: 6   IISASHDCTIRLW-------------ALTGQVLMEMVGHTAIVYSI--DSHASGLIVSGS 50
            +S S D  +++W             + +  V    + H  ++ +I  D+    L+ + S
Sbjct: 27  TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS 86

Query: 51  EDRFAKIWK-------------DGVCVQSIEHPGCVWDAKFLENGD------IVTACSDG 91
                  ++                 + S       W  K+  + D      +V     G
Sbjct: 87  FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKG 146

Query: 92  VTRIWTVHSDK 102
            T IW  H   
Sbjct: 147 TTYIWKFHPFA 157

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 3e-05
 Identities = 13/95 (13%), Positives = 28/95 (29%), Gaps = 18/95 (18%)

Query: 30  GHTAIVYSIDSHASGLIVSGSEDRFAKIW---------KDGVCVQSIEHPGCVWDAKFLE 80
            H A ++S+ +  +   VS S D + K+W                   H   +     L+
Sbjct: 12  AHDADIFSVSAC-NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ 70

Query: 81  NGD--------IVTACSDGVTRIWTVHSDKVADSL 107
             +        + T    G    + +  +     +
Sbjct: 71  AIERDAFELCLVATTSFSGDLLFYRITREDETKKV 105

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 4e-04
 Identities = 14/97 (14%), Positives = 25/97 (25%), Gaps = 17/97 (17%)

Query: 6   IISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSID-----SHASGLIVSGSEDRFAKIWK 59
           + SA  D  +R W + T + +  +  H   +   +           +         K  K
Sbjct: 304 LCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD-VKFLK 362

Query: 60  DGVCVQSIEHPGCVWDAKFLENGDIVTACSDGVTRIW 96
            G                   N  +   C D   R +
Sbjct: 363 KGWRSGMGADL----------NESLCCVCLDRSIRWF 389

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 43.2 bits (100), Expect = 5e-05
 Identities = 9/112 (8%), Positives = 28/112 (25%), Gaps = 5/112 (4%)

Query: 3   GVGIISASHDCTIRLWALT--GQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIW-- 58
                +A          L        E    T + ++                    +  
Sbjct: 220 KQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDL 279

Query: 59  KDGVCVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLEL 109
           K    +++       +   F + GD +    +     ++   + +   +++L
Sbjct: 280 KQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 331

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.9 bits (99), Expect = 6e-05
 Identities = 9/113 (7%), Positives = 32/113 (28%), Gaps = 4/113 (3%)

Query: 1   MPGVGIISASHDCTIRLW-ALTGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIW- 58
                    ++   +      TG++ M  V    + Y   +       +       + + 
Sbjct: 207 KDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFD 266

Query: 59  -KDGVCVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLEL 109
            +    ++ +  P   +      +G  +    + G    +   + +    ++L
Sbjct: 267 LEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	563
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.82
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.81
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.81
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.81
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.81
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.8
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.79
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.78
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.77
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.76
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.76
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.75
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.73
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.71
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.71
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.68
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.67
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.67
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.65
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.62
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.6
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.59
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.53
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.53
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.5
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.48
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.45
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.44
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.42
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.42
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.41
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.39
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.27
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.21
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.21
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.19
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.11
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.99
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.84
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.7
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.56
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.51
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.49
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.46
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.46
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.18
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.08
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	97.97
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	97.73
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.61
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	97.54
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	97.35
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.24
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	97.21
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	96.92
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	96.73
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	96.63
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	95.45
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	95.33
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	95.16
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	94.62
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	94.44
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	94.27
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	94.25
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	93.51
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	92.6
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	92.52
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	92.16
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	90.98
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	89.92
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	89.79
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	89.48
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	88.39
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	86.97
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	86.05
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	85.8
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	85.56
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	85.51
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	85.08
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	83.04

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=7.7e-19  Score=170.85  Aligned_cols=202  Identities=24%  Similarity=0.375  Sum_probs=147.1

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC------------------------------------
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG------------------------------------   44 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g------------------------------------   44 (563)
                      +|++|+|||.||+||+||+ +++++.++.+|...|.+++++|++                                    
T Consensus        28 ~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (317)
T d1vyhc1          28 VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSV  107 (317)
T ss_dssp             SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccccccccccccccccceee
Confidence            4789999999999999999 899999998888888877776653                                    


Q ss_pred             -------eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccc
Q 008510           45 -------LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYA  113 (563)
Q Consensus        45 -------~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~  113 (563)
                             .+++++.|+.+++|+  +++.+..+. |...+.+++|+|++. +++|+.|+.|++|+.++++.....  ..+.
T Consensus       108 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~--~~~~  185 (317)
T d1vyhc1         108 SIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL--REHR  185 (317)
T ss_dssp             EECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE--CCCS
T ss_pred             eccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEE--ecCC
Confidence                   466778888888888  677777777 778899999999888 889999999999998887643221  1111


Q ss_pred             cc----------------------------cceeEEeeccCCceEEEeCCCCceeeec-c----------cCCCeEEEEe
Q 008510          114 SE----------------------------LSQYKLCRKKVGGLKLEDLPGLEALQIP-G----------TNAGQTKVVR  154 (563)
Q Consensus       114 ~~----------------------------v~~~~~~~~~~~~i~~~d~~~~~~l~~~-g----------~~dg~~~l~~  154 (563)
                      ..                            ......++..++.|++||+.....+... +          +++|.+.+..
T Consensus       186 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  265 (317)
T d1vyhc1         186 HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSC  265 (317)
T ss_dssp             SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEE
T ss_pred             CCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEE
Confidence            00                            1134556677889999998876554322 3          3444444444


Q ss_pred             cCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhH
Q 008510          155 EGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYD  222 (563)
Q Consensus       155 ~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~  222 (563)
                      +.+ +.+++||..++.               ....+.+|. +.|.++.+ ++|..+++++.|+++++|+
T Consensus       266 ~~d-g~i~iwd~~~~~---------------~~~~~~~h~-~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         266 ADD-KTLRVWDYKNKR---------------CMKTLNAHE-HFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             ETT-TEEEEECCTTSC---------------CCEEEECCS-SCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             ECC-CeEEEEECCCCc---------------EEEEEcCCC-CCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            433 445566654331               234466766 77999999 8999999999999999985

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.81  E-value=1.8e-18  Score=171.64  Aligned_cols=211  Identities=13%  Similarity=0.133  Sum_probs=154.2

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCce--eEEEe-cCCcEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVC--VQSIE-HPGCVW   74 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~--~~~l~-h~~~V~   74 (563)
                      +|+.|+.++ ++.|.+|++ +++..+.+.+|...|.+++|+|+| ++++|+.|++|+|||  .+..  ...+. |...|.
T Consensus        28 ~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  106 (311)
T d1nr0a1          28 AGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVK  106 (311)
T ss_dssp             TSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEE
T ss_pred             CCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccc
Confidence            578888885 667999999 788889999999999999999999 999999999999999  4433  34455 888999


Q ss_pred             EEEEccCCc-EEEEeC--CCcEEEEEcCCCceeceeeecccccccc--------e-eEEeeccCCceEEEeCCCCceeee
Q 008510           75 DAKFLENGD-IVTACS--DGVTRIWTVHSDKVADSLELEAYASELS--------Q-YKLCRKKVGGLKLEDLPGLEALQI  142 (563)
Q Consensus        75 ~v~~~p~g~-i~sgs~--Dg~Irvwd~~~~~~~~~~~~~~~~~~v~--------~-~~~~~~~~~~i~~~d~~~~~~l~~  142 (563)
                      +++|+|+|. +++++.  +..++||++++++...  .+..+...+.        . ..+++..++.|++||+++.+....
T Consensus       107 ~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~--~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~  184 (311)
T d1nr0a1         107 DISWDSESKRIAAVGEGRERFGHVFLFDTGTSNG--NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKST  184 (311)
T ss_dssp             EEEECTTSCEEEEEECCSSCSEEEEETTTCCBCB--CCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccc--cccccccccccccccccceeeecccccccccccccccccccccc
Confidence            999999998 777775  4669999999876432  2333333332        2 344677889999999987654432


Q ss_pred             -----------cccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeee
Q 008510          143 -----------PGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTR  210 (563)
Q Consensus       143 -----------~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~  210 (563)
                                 ..+++|...+..+.+ +.+.+|+...+.......  .      ......||. +.|.++.+ ++|+.++
T Consensus       185 ~~~~~~~i~~v~~~p~~~~l~~~~~d-~~v~~~d~~~~~~~~~~~--~------~~~~~~~h~-~~V~~~~~s~~~~~l~  254 (311)
T d1nr0a1         185 FGEHTKFVHSVRYNPDGSLFASTGGD-GTIVLYNGVDGTKTGVFE--D------DSLKNVAHS-GSVFGLTWSPDGTKIA  254 (311)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETT-SCEEEEETTTCCEEEECB--C------TTSSSCSSS-SCEEEEEECTTSSEEE
T ss_pred             cccccccccccccCcccccccccccc-cccccccccccccccccc--c------ccccccccc-ccccccccCCCCCEEE
Confidence                       244556655554444 445677765543222111  0      112234555 77999999 8999999


Q ss_pred             eecCCCCCChhHHHH
Q 008510          211 KLPYNRSDNPYDAAD  225 (563)
Q Consensus       211 ~~~~n~~~~~w~~a~  225 (563)
                      +++.|+.+++|++..
T Consensus       255 tgs~Dg~v~iwd~~t  269 (311)
T d1nr0a1         255 SASADKTIKIWNVAT  269 (311)
T ss_dssp             EEETTSEEEEEETTT
T ss_pred             EEeCCCeEEEEECCC
Confidence            999999999999754

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.81  E-value=3.8e-18  Score=168.50  Aligned_cols=202  Identities=16%  Similarity=0.240  Sum_probs=152.6

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--C----CceeEEE------
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--D----GVCVQSI------   67 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~----~~~~~~l------   67 (563)
                      +|.+|+|||.||+|++||+ +++++.++.+|...|.+++|+|++ .+++|+.|+++++|+  .    ......+      
T Consensus        66 ~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~  145 (340)
T d1tbga_          66 DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGY  145 (340)
T ss_dssp             TSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSC
T ss_pred             CCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceeccccccc
Confidence            5789999999999999999 899999999999999999999999 999999999999998  1    1111111      


Q ss_pred             -----------------------------------e-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeec
Q 008510           68 -----------------------------------E-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELE  110 (563)
Q Consensus        68 -----------------------------------~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~  110 (563)
                                                         . +...+.+..+.+.+. +++|+.|+.|++||+++++...  .+.
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~--~~~  223 (340)
T d1tbga_         146 LSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ--TFT  223 (340)
T ss_dssp             EEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE--EEC
T ss_pred             ccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEE--EEe
Confidence                                               0 233577888888877 8999999999999999987543  233


Q ss_pred             ccccccc--------eeEEeeccCCceEEEeCCCCceeee-------------cccCCCeEEEEecCCCeEEEEEecccc
Q 008510          111 AYASELS--------QYKLCRKKVGGLKLEDLPGLEALQI-------------PGTNAGQTKVVREGDNGVAYSWDMKEQ  169 (563)
Q Consensus       111 ~~~~~v~--------~~~~~~~~~~~i~~~d~~~~~~l~~-------------~g~~dg~~~l~~~~~~~~~~~wd~~~~  169 (563)
                      .+...+.        ...+++..++.+++||+.....+..             ..+++|.+.+..+.+ +.+++||...+
T Consensus       224 ~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d-g~i~iwd~~~~  302 (340)
T d1tbga_         224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD-FNCNVWDALKA  302 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETT-SCEEEEETTTC
T ss_pred             CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECC-CEEEEEECCCC
Confidence            3433332        3455677889999999986644322             245566666555555 45677886554


Q ss_pred             eEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhH
Q 008510          170 KWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYD  222 (563)
Q Consensus       170 ~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~  222 (563)
                      ..               ...+.||. +.|.++.+ ++|..+++++.|+.+++|+
T Consensus       303 ~~---------------~~~~~~H~-~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         303 DR---------------AGVLAGHD-NRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CE---------------EEEECCCS-SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             cE---------------EEEEcCCC-CCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            22               22356665 67999999 8999999999999999995

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.81  E-value=1.9e-18  Score=175.45  Aligned_cols=203  Identities=11%  Similarity=0.020  Sum_probs=142.7

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCc--eeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEE--e-cCCc
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQ--VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSI--E-HPGC   72 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~--~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l--~-h~~~   72 (563)
                      +|++||+|+.||+|++|+. .++  ++.++.||.+.|.+++|+|++ ++++||.|++|+|||  ++.....+  . |...
T Consensus        18 dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~   97 (371)
T d1k8kc_          18 DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRA   97 (371)
T ss_dssp             TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSC
T ss_pred             CCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccccccccccc
Confidence            6889999999999999999 554  678899999999999999999 999999999999999  44443333  3 6779


Q ss_pred             EEEEEEccCCc-EEEEeCCCcEEEEEcCCCceec--eeeeccccccc--------ceeEEeeccCCceEEEeCCCCce--
Q 008510           73 VWDAKFLENGD-IVTACSDGVTRIWTVHSDKVAD--SLELEAYASEL--------SQYKLCRKKVGGLKLEDLPGLEA--  139 (563)
Q Consensus        73 V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~--~~~~~~~~~~v--------~~~~~~~~~~~~i~~~d~~~~~~--  139 (563)
                      |++++|+|+++ +++|+.|++|++|+........  ......+...+        ..+.+++..++.+++|+......  
T Consensus        98 v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~  177 (371)
T d1k8kc_          98 ARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEE  177 (371)
T ss_dssp             EEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSC
T ss_pred             ccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCcccc
Confidence            99999999999 9999999999999987654221  11222333322        23455677899999999753321  


Q ss_pred             ---------------------------eeecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecC
Q 008510          140 ---------------------------LQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDG  192 (563)
Q Consensus       140 ---------------------------l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g  192 (563)
                                                 .....+++|...+..+.| +.+.+||...+.-               ...+.+
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d-~~i~iwd~~~~~~---------------~~~~~~  241 (371)
T d1k8kc_         178 RPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD-STVCLADADKKMA---------------VATLAS  241 (371)
T ss_dssp             CCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT-TEEEEEEGGGTTE---------------EEEEEC
T ss_pred             ccccccccccccceeeeeeccCccCcEEEEEeecccccccccccC-CcceEEeeecccc---------------eeeeec
Confidence                                       112245566655555444 5567788655421               112334


Q ss_pred             cccCcEEEEEc-CCCCeeeeecCCCCCChhH
Q 008510          193 IQYDYVFDVDI-GDGEPTRKLPYNRSDNPYD  222 (563)
Q Consensus       193 ~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~  222 (563)
                      +. ..|.++.| +||+.++ ..+|.....|.
T Consensus       242 ~~-~~v~s~~fs~d~~~la-~g~d~~~~~~~  270 (371)
T d1k8kc_         242 ET-LPLLAVTFITESSLVA-AGHDCFPVLFT  270 (371)
T ss_dssp             SS-CCEEEEEEEETTEEEE-EETTSSCEEEE
T ss_pred             cc-ccceeeeecCCCCEEE-EEcCCceEEEE
Confidence            43 55888888 7876554 45566555544

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.2e-18  Score=172.24  Aligned_cols=204  Identities=14%  Similarity=0.238  Sum_probs=154.8

Q ss_pred             CCCEEEEEECCCcEEEEcC---CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEE
Q 008510            2 PGVGIISASHDCTIRLWAL---TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVW   74 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~---~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~   74 (563)
                      +|++|++|+.||+|++||+   ++++...+.+|...|.+++|+|++ .+++++.|+.|++|+  ++++..... |...|+
T Consensus       108 dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~  187 (337)
T d1gxra_         108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS  187 (337)
T ss_dssp             TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             CCCEEEEeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            5789999999999999998   456778889999999999999999 999999999999999  667666666 888999


Q ss_pred             EEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccc----c-cccceeEEeeccCCceEEEeCCCCceeeecc----
Q 008510           75 DAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAY----A-SELSQYKLCRKKVGGLKLEDLPGLEALQIPG----  144 (563)
Q Consensus        75 ~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~----~-~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g----  144 (563)
                      +++|++++. +++|+.|+.|++||+++++..........    . ..-....+++..++.+++||+...+.....+    
T Consensus       188 ~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~  267 (337)
T d1gxra_         188 CIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESC  267 (337)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSC
T ss_pred             cccccccccccccccccccccccccccceeecccccccceEEEEEcccccccceeccccccccccccccccccccccccc
Confidence            999999998 89999999999999999875533222111    0 1122455677888999999998776554433    


Q ss_pred             ------cCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCC
Q 008510          145 ------TNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRS  217 (563)
Q Consensus       145 ------~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~  217 (563)
                            +++|...+..+.| +.+++|+...+.-.                 ..-.+.+.|.++.+ ++|+.+++++.|+.
T Consensus       268 i~~v~~s~~g~~l~s~s~D-g~i~iwd~~~~~~~-----------------~~~~~~~~v~~~~~s~d~~~l~t~s~D~~  329 (337)
T d1gxra_         268 VLSLKFAYCGKWFVSTGKD-NLLNAWRTPYGASI-----------------FQSKESSSVLSCDISVDDKYIVTGSGDKK  329 (337)
T ss_dssp             EEEEEECTTSSEEEEEETT-SEEEEEETTTCCEE-----------------EEEECSSCEEEEEECTTSCEEEEEETTSC
T ss_pred             cceEEECCCCCEEEEEeCC-CeEEEEECCCCCEE-----------------EEccCCCCEEEEEEeCCCCEEEEEeCCCe
Confidence                  4455544444443 45667776544211                 11112366999999 89999999999999


Q ss_pred             CChhHH
Q 008510          218 DNPYDA  223 (563)
Q Consensus       218 ~~~w~~  223 (563)
                      +++|++
T Consensus       330 I~vWdl  335 (337)
T d1gxra_         330 ATVYEV  335 (337)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999975

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.80  E-value=1.9e-18  Score=171.35  Aligned_cols=205  Identities=13%  Similarity=0.129  Sum_probs=149.1

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCc--eeEEEecCCCcEEEEEEcCCC-eEEEEeC--CCcEEEEc--CCceeEEEe-cCCc
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQ--VLMEMVGHTAIVYSIDSHASG-LIVSGSE--DRFAKIWK--DGVCVQSIE-HPGC   72 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~--~i~~l~gH~~~V~~v~~~p~g-~l~s~s~--D~tvriWd--~~~~~~~l~-h~~~   72 (563)
                      +|++|++|+.||+|++||+ +++  ...++.+|.+.|.+++|+|++ .+++++.  |+.++||+  +++..+++. |...
T Consensus        69 ~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~  148 (311)
T d1nr0a1          69 SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARA  148 (311)
T ss_dssp             TSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSC
T ss_pred             CCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccc
Confidence            5899999999999999999 444  346688999999999999999 8888876  46699999  677777777 8889


Q ss_pred             EEEEEEccCCc--EEEEeCCCcEEEEEcCCCceeceeeeccccccc--------ceeEEeeccCCceEEEeCCCCcee--
Q 008510           73 VWDAKFLENGD--IVTACSDGVTRIWTVHSDKVADSLELEAYASEL--------SQYKLCRKKVGGLKLEDLPGLEAL--  140 (563)
Q Consensus        73 V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v--------~~~~~~~~~~~~i~~~d~~~~~~l--  140 (563)
                      |++++|+|+|+  +++|+.|+.|++||.++++....  +..+...+        ....+++..++.+.+||.......  
T Consensus       149 v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~--~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~  226 (311)
T d1nr0a1         149 MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKST--FGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGV  226 (311)
T ss_dssp             EEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEE--ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             cccccccccceeeecccccccccccccccccccccc--cccccccccccccCcccccccccccccccccccccccccccc
Confidence            99999999987  78999999999999998874432  22222222        244556778899999998754322  


Q ss_pred             ----------------eecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEcC
Q 008510          141 ----------------QIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDIG  204 (563)
Q Consensus       141 ----------------~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~~  204 (563)
                                      ....+++|...+..+.| +.+++||..+++....  +..+           ......+.++.+ 
T Consensus       227 ~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~D-g~v~iwd~~t~~~~~~--l~~~-----------~~~~~~~~~~~~-  291 (311)
T d1nr0a1         227 FEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD-KTIKIWNVATLKVEKT--IPVG-----------TRIEDQQLGIIW-  291 (311)
T ss_dssp             CBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT-SEEEEEETTTTEEEEE--EECC-----------SSGGGCEEEEEE-
T ss_pred             ccccccccccccccccccccCCCCCEEEEEeCC-CeEEEEECCCCcEEEE--EECC-----------CCccceEEEEEe-
Confidence                            22356677766665555 5678899877654321  1111           011133555555 


Q ss_pred             CCCeeeeecCCCCCChhHH
Q 008510          205 DGEPTRKLPYNRSDNPYDA  223 (563)
Q Consensus       205 dg~~~~~~~~n~~~~~w~~  223 (563)
                      ++..++.++.|+.++.|+.
T Consensus       292 ~~~~l~s~s~dG~i~~wd~  310 (311)
T d1nr0a1         292 TKQALVSISANGFINFVNP  310 (311)
T ss_dssp             CSSCEEEEETTCCEEEEET
T ss_pred             cCCEEEEEECCCEEEEEeC
Confidence            3445889999999999974

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=5.2e-18  Score=171.74  Aligned_cols=217  Identities=18%  Similarity=0.305  Sum_probs=153.4

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEe------------------cCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMV------------------GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--   59 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~------------------gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--   59 (563)
                      ||++|++|+ |++|++||+ +++++.++.                  +|...|++++|+|+| .+++|+.|++|++|+  
T Consensus        73 dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~  151 (388)
T d1erja_          73 DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIE  151 (388)
T ss_dssp             TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             CCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceeccccccccccccc
Confidence            588999987 899999999 888777664                  466779999999999 999999999999999  


Q ss_pred             CCceeEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecc------cccccceeEEeeccCCceEE
Q 008510           60 DGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEA------YASELSQYKLCRKKVGGLKL  131 (563)
Q Consensus        60 ~~~~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~i~~  131 (563)
                      .++.+..+. |...|+++++++++. +++|+.++.+++||.++...........      +...-....+++..++.+.+
T Consensus       152 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i  231 (388)
T d1erja_         152 NRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRV  231 (388)
T ss_dssp             TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEE
T ss_pred             ccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEE
Confidence            777777777 889999999999988 8999999999999999876443222111      11112345667788899999


Q ss_pred             EeCCCCceee------------------ecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCc
Q 008510          132 EDLPGLEALQ------------------IPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGI  193 (563)
Q Consensus       132 ~d~~~~~~l~------------------~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~  193 (563)
                      |+........                  ...+++|...+..+.+ +.+.+|+...+..........   .........++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~  307 (388)
T d1erja_         232 WDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD-RSVKLWNLQNANNKSDSKTPN---SGTCEVTYIGH  307 (388)
T ss_dssp             EETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT-SEEEEEEC------------------CEEEEEECC
T ss_pred             eecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECC-CcEEEEeccCCcccccccccc---ccceeeecccc
Confidence            9997654321                  2244566655555544 556778865543221110000   01112233344


Q ss_pred             ccCcEEEEEc-CCCCeeeeecCCCCCChhHHH
Q 008510          194 QYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAA  224 (563)
Q Consensus       194 ~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a  224 (563)
                      . +.|.++.+ ++|+.++++..|+.+++|++.
T Consensus       308 ~-~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~  338 (388)
T d1erja_         308 K-DFVLSVATTQNDEYILSGSKDRGVLFWDKK  338 (388)
T ss_dssp             S-SCEEEEEECGGGCEEEEEETTSEEEEEETT
T ss_pred             c-ceEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence            4 78999999 899999999999999999874

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=7.1e-18  Score=168.55  Aligned_cols=202  Identities=12%  Similarity=0.177  Sum_probs=147.0

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCc---e--eEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc----CCceeEEEe-c
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQ---V--LMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK----DGVCVQSIE-H   69 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~---~--i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd----~~~~~~~l~-h   69 (563)
                      +|++|+||+ ||+|+|||+ ++.   .  .....+|.+.|.+++|+|+| .|++|+.|++|++||    ..+....+. |
T Consensus        62 ~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  140 (337)
T d1gxra_          62 PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSS  140 (337)
T ss_dssp             SSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECS
T ss_pred             CCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccccccc
Confidence            578999987 899999998 332   2  23345899999999999999 899999999999999    334555665 7


Q ss_pred             CCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccccc--------ceeEEeeccCCceEEEeCCCCcee
Q 008510           70 PGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL--------SQYKLCRKKVGGLKLEDLPGLEAL  140 (563)
Q Consensus        70 ~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v--------~~~~~~~~~~~~i~~~d~~~~~~l  140 (563)
                      ...|.+++|+|++. +++++.|+.|++|++++++....  ...+...+        ....+.+..++.+++||++..+.+
T Consensus       141 ~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~--~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~  218 (337)
T d1gxra_         141 APACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ--FQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQL  218 (337)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccceee
Confidence            78999999999998 89999999999999998874332  22222222        234556777899999999877665


Q ss_pred             eeccc----------CCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCee
Q 008510          141 QIPGT----------NAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPT  209 (563)
Q Consensus       141 ~~~g~----------~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~  209 (563)
                      ....+          +++...+..+.+ +.+++|+...+.                .....+|. +.|.++.+ ++|+.+
T Consensus       219 ~~~~~~~~i~~l~~~~~~~~l~~~~~d-~~i~i~d~~~~~----------------~~~~~~~~-~~i~~v~~s~~g~~l  280 (337)
T d1gxra_         219 QQHDFTSQIFSLGYCPTGEWLAVGMES-SNVEVLHVNKPD----------------KYQLHLHE-SCVLSLKFAYCGKWF  280 (337)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEEETT-SCEEEEETTSSC----------------EEEECCCS-SCEEEEEECTTSSEE
T ss_pred             cccccccceEEEEEcccccccceeccc-cccccccccccc----------------cccccccc-cccceEEECCCCCEE
Confidence            44333          344444433333 334566654432                22233444 67999999 999999


Q ss_pred             eeecCCCCCChhHHH
Q 008510          210 RKLPYNRSDNPYDAA  224 (563)
Q Consensus       210 ~~~~~n~~~~~w~~a  224 (563)
                      ++++.|+.+++|++.
T Consensus       281 ~s~s~Dg~i~iwd~~  295 (337)
T d1gxra_         281 VSTGKDNLLNAWRTP  295 (337)
T ss_dssp             EEEETTSEEEEEETT
T ss_pred             EEEeCCCeEEEEECC
Confidence            999999999999864

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=1.4e-17  Score=164.81  Aligned_cols=205  Identities=20%  Similarity=0.299  Sum_probs=141.7

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEEe---cCCcEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSIE---HPGCVWD   75 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l~---h~~~V~~   75 (563)
                      +|++|+|||.||+|++||+ +++++.++.+|.+.|++++|+|++.+++|+.|++|++|+  ..++.....   +......
T Consensus        22 ~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~  101 (355)
T d1nexb2          22 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLD  101 (355)
T ss_dssp             ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCCEEEEEecccccccccccccccccccccccccccccc
Confidence            5789999999999999999 899999999999999999999988999999999999999  555555554   2235666


Q ss_pred             EEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeec---------------------ccccc------cceeEEeeccCC
Q 008510           76 AKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELE---------------------AYASE------LSQYKLCRKKVG  127 (563)
Q Consensus        76 v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~---------------------~~~~~------v~~~~~~~~~~~  127 (563)
                      ..+.+++. +++++.|+.|++||+++..........                     .+...      .....+.+..++
T Consensus       102 ~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~  181 (355)
T d1nexb2         102 IVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDN  181 (355)
T ss_dssp             EEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTS
T ss_pred             cccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccc
Confidence            77788887 899999999999999876532111000                     00000      113345566778


Q ss_pred             ceEEEeCCCCceeeec-cc----------CCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccC
Q 008510          128 GLKLEDLPGLEALQIP-GT----------NAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYD  196 (563)
Q Consensus       128 ~i~~~d~~~~~~l~~~-g~----------~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d  196 (563)
                      .+++||++..+.+... ++          +++...+....+ +.+++|+..++..               ...+.+|. .
T Consensus       182 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~i~i~d~~~~~~---------------~~~~~~h~-~  244 (355)
T d1nexb2         182 TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMD-TTIRIWDLENGEL---------------MYTLQGHT-A  244 (355)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETT-SCEEEEETTTCCE---------------EEEECCCS-S
T ss_pred             eeeeeecccccceeeeeccccccccccccccceeeeccccc-ceEEeeecccccc---------------cccccccc-c
Confidence            9999999877655433 22          334444444333 3345666554422               22345554 5


Q ss_pred             cEEEEEcCCCCeeeeecCCCCCChhHHH
Q 008510          197 YVFDVDIGDGEPTRKLPYNRSDNPYDAA  224 (563)
Q Consensus       197 ~v~~vd~~dg~~~~~~~~n~~~~~w~~a  224 (563)
                      .|.++.+ +++.++.+..|+.+++|++.
T Consensus       245 ~v~~~~~-~~~~l~~~~~dg~i~iwd~~  271 (355)
T d1nexb2         245 LVGLLRL-SDKFLVSAAADGSIRGWDAN  271 (355)
T ss_dssp             CCCEEEE-CSSEEEEECTTSEEEEEETT
T ss_pred             ccccccc-ccceeeeeeccccccccccc
Confidence            5777777 34678899999999999864

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.76  E-value=1.5e-17  Score=162.48  Aligned_cols=207  Identities=12%  Similarity=0.108  Sum_probs=141.6

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEe-cCCCcEEEEEEcCCCeEEEEeCCCcEEEEc-CCce---------------
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMV-GHTAIVYSIDSHASGLIVSGSEDRFAKIWK-DGVC---------------   63 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~-gH~~~V~~v~~~p~g~l~s~s~D~tvriWd-~~~~---------------   63 (563)
                      +|++|+|||.||+|++||+ ++++++++. +|...|.+++|+|+|.+++++.|+++++|+ .+..               
T Consensus        23 dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~  102 (299)
T d1nr0a2          23 DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQP  102 (299)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEeccCCccccccccccccccccc
Confidence            5789999999999999999 888888874 799999999999999778889999999998 2110               


Q ss_pred             -------------------eE--------EEecCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccc
Q 008510           64 -------------------VQ--------SIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASE  115 (563)
Q Consensus        64 -------------------~~--------~l~h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~  115 (563)
                                         +.        .......+.+++|+|+++ +++|+.||.|++||+++++...... ..+...
T Consensus       103 ~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~-~~~~~~  181 (299)
T d1nr0a2         103 LGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAE  181 (299)
T ss_dssp             EEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence                               00        001233577889999988 8899999999999998776332211 122222


Q ss_pred             c--------ceeEEeeccCCceEEEeCCCCceee--------------ecccCCCeEEEEecCCCeEEEEEecccceEEE
Q 008510          116 L--------SQYKLCRKKVGGLKLEDLPGLEALQ--------------IPGTNAGQTKVVREGDNGVAYSWDMKEQKWDK  173 (563)
Q Consensus       116 v--------~~~~~~~~~~~~i~~~d~~~~~~l~--------------~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~  173 (563)
                      +        ....+++..++.+++||+.....+.              ...+++|...+..+.| +.+++|+...+... 
T Consensus       182 i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~d-g~i~iwd~~~~~~~-  259 (299)
T d1nr0a2         182 ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLD-NSVIVWNMNKPSDH-  259 (299)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETT-SCEEEEETTCTTSC-
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccceEEEcCC-CEEEEEECCCCCcc-
Confidence            2        2445567788999999986543221              1234555554444444 44566775443211 


Q ss_pred             eCcEeeCCCCCCCceeecCcccCcEEEEEcCCCCeeeeecCCCCCChhHH
Q 008510          174 LGEVVDGPDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYDA  223 (563)
Q Consensus       174 ~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~~dg~~~~~~~~n~~~~~w~~  223 (563)
                                  ......++....+..+.++++..+++.+.|+.+++|++
T Consensus       260 ------------~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl  297 (299)
T d1nr0a2         260 ------------PIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV  297 (299)
T ss_dssp             ------------CEEETTSSTTSCEEEEEEEETTEEEEEETTSCEEEEEC
T ss_pred             ------------eEEEecCCCCCcEEEEEECCCCEEEEEeCCCEEEEEec
Confidence                        11122233445566776677888999999999999986

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.76  E-value=3e-17  Score=166.42  Aligned_cols=224  Identities=11%  Similarity=0.058  Sum_probs=150.4

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCc--eeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCcee----EEEe-cC
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQ--VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCV----QSIE-HP   70 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~--~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~----~~l~-h~   70 (563)
                      +|++|++||.|++|++||+ ++.  +...+.+|...|.+++|+|++ .+++|+.|+++++|+  .....    .... |.
T Consensus        62 ~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~  141 (371)
T d1k8kc_          62 DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIR  141 (371)
T ss_dssp             TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCC
T ss_pred             CCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccc
Confidence            5789999999999999999 544  455667899999999999999 899999999999998  33322    2222 77


Q ss_pred             CcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceec----------------eeeeccccccc--------ceeEEeecc
Q 008510           71 GCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVAD----------------SLELEAYASEL--------SQYKLCRKK  125 (563)
Q Consensus        71 ~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~----------------~~~~~~~~~~v--------~~~~~~~~~  125 (563)
                      ..|.+++|+|+|. +++|+.|++|++||........                ......+...+        ....+++..
T Consensus       142 ~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~  221 (371)
T d1k8kc_         142 STVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH  221 (371)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET
T ss_pred             cccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccccccc
Confidence            8999999999998 9999999999999987543110                01111222222        234456677


Q ss_pred             CCceEEEeCCCCceeee-----------cccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCC----------
Q 008510          126 VGGLKLEDLPGLEALQI-----------PGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDG----------  184 (563)
Q Consensus       126 ~~~i~~~d~~~~~~l~~-----------~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~----------  184 (563)
                      ++.|++||+.....+..           ..++||.+......+...++.|+...+.|...+.........          
T Consensus       222 d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (371)
T d1k8kc_         222 DSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERF  301 (371)
T ss_dssp             TTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHH
T ss_pred             CCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEcCCceEEEEeeCCCceEEEeeeecCccccccccccceeeE
Confidence            89999999976544332           244566555544444445777888777776543221110000          


Q ss_pred             --------------CCceeecCcccCcEEEEEc-CCC----CeeeeecCCCCCChhHHHHH
Q 008510          185 --------------MNRPILDGIQYDYVFDVDI-GDG----EPTRKLPYNRSDNPYDAADK  226 (563)
Q Consensus       185 --------------~~~~~~~g~~~d~v~~vd~-~dg----~~~~~~~~n~~~~~w~~a~~  226 (563)
                                    ........|. +.|.++.+ +++    ..+++.+.|+.+++|++...
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~H~-~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~  361 (371)
T d1k8kc_         302 QNLDKKASSEGSAAAGAGLDSLHK-NSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL  361 (371)
T ss_dssp             HHCCCCC---------CCCSSSSS-SCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred             ecccceeEEeccccccceeccccc-CCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCcC
Confidence                          0111112233 66888887 333    23679999999999998653

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3e-17  Score=157.63  Aligned_cols=208  Identities=20%  Similarity=0.299  Sum_probs=135.8

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CCceeEEE-----------
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DGVCVQSI-----------   67 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~~~~~~l-----------   67 (563)
                      ||++|+|||.||+||+||+ ++++++++.+|.+.|++++|+++ .++||+.|++|++|+  .+......           
T Consensus        24 d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~~-~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~  102 (293)
T d1p22a2          24 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDER-VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLR  102 (293)
T ss_dssp             CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSS-EEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEE
T ss_pred             cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecccc-eeeccccccccccccccccccccccccccccccccc
Confidence            6899999999999999999 89999999999999999987433 899999999999998  32221111           


Q ss_pred             --------------------------------e-cCCcEEEEEEccCCcEEEEeCCCcEEEEEcCCCceeceeeeccccc
Q 008510           68 --------------------------------E-HPGCVWDAKFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYAS  114 (563)
Q Consensus        68 --------------------------------~-h~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~  114 (563)
                                                      . |...|.++.+.++ .+++++.|+.|++||.++++....  +..+..
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~d~~i~~~d~~~~~~~~~--~~~~~~  179 (293)
T d1p22a2         103 FNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK-YIVSASGDRTIKVWNTSTCEFVRT--LNGHKR  179 (293)
T ss_dssp             CCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETT-EEEEEETTSEEEEEETTTCCEEEE--EECCSS
T ss_pred             ccccceeecccccceeEeeccccccccccccccccccccccceeccc-ccccccCCCceeeecCCCCcEEEE--Eccccc
Confidence                                            1 3334544444332 267788888888888888764432  122211


Q ss_pred             cc------ceeEEeeccCCceEEEeCCCCceeeec-cc--------CCCeEEEEecCCCeEEEEEecccceEEEeCcEee
Q 008510          115 EL------SQYKLCRKKVGGLKLEDLPGLEALQIP-GT--------NAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVD  179 (563)
Q Consensus       115 ~v------~~~~~~~~~~~~i~~~d~~~~~~l~~~-g~--------~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~  179 (563)
                      .+      ....+++..++.|++||+.....+... ++        .++...+..+.+ +.+++|+.....      ...
T Consensus       180 ~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~d-g~i~iwd~~~~~------~~~  252 (293)
T d1p22a2         180 GIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYD-GKIKVWDLVAAL------DPR  252 (293)
T ss_dssp             CEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETT-SCEEEEEHHHHT------STT
T ss_pred             ccccccCCCCeEEEecCCCEEEEEecccceeeeeecccceeeeeccccceEEEEEcCC-CEEEEEECCCCc------ccc
Confidence            11      234566778889999998877655443 22        223333333333 445566643321      000


Q ss_pred             CCCCCCCceeecCcccCcEEEEEcCCCCeeeeecCCCCCChhH
Q 008510          180 GPDDGMNRPILDGIQYDYVFDVDIGDGEPTRKLPYNRSDNPYD  222 (563)
Q Consensus       180 ~~~~~~~~~~~~g~~~d~v~~vd~~dg~~~~~~~~n~~~~~w~  222 (563)
                      ..........+.||. +.|.++.+ ++..+++.+.|+++++|+
T Consensus       253 ~~~~~~~~~~~~~H~-~~V~~v~~-d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         253 APAGTLCLRTLVEHS-GRVFRLQF-DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             SCTTTTEEEEECCCS-SCCCCEEE-CSSCEEECCSSSEEEEEC
T ss_pred             ccCCceeeEEecCCC-CCEEEEEE-cCCEEEEEecCCEEEEeC
Confidence            000111234466776 67888888 567799999999999996

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=2.1e-16  Score=159.65  Aligned_cols=205  Identities=21%  Similarity=0.337  Sum_probs=151.4

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAK   77 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~   77 (563)
                      +|++|++|+.||+|++|+. .++.+..+.+|...|.++++++++ .+++|+.|+.+++||  +..+.....+.....++.
T Consensus       132 ~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~  211 (388)
T d1erja_         132 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVA  211 (388)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEE
T ss_pred             CCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeecccccccccccccccccccc
Confidence            5789999999999999999 889999999999999999999998 899999999999999  556666666666666777


Q ss_pred             Ecc-CCc-EEEEeCCCcEEEEEcCCCceeceee-----eccccccc--------ceeEEeeccCCceEEEeCCCCce---
Q 008510           78 FLE-NGD-IVTACSDGVTRIWTVHSDKVADSLE-----LEAYASEL--------SQYKLCRKKVGGLKLEDLPGLEA---  139 (563)
Q Consensus        78 ~~p-~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~-----~~~~~~~v--------~~~~~~~~~~~~i~~~d~~~~~~---  139 (563)
                      +.+ ++. +++|+.||.|++||.+++.......     ...+...+        ....+++..++.+++||++....   
T Consensus       212 ~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~  291 (388)
T d1erja_         212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSD  291 (388)
T ss_dssp             ECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------
T ss_pred             ccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccc
Confidence            766 667 8999999999999999887543221     11222222        24556777889999999864321   


Q ss_pred             --------------------eeecccCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEE
Q 008510          140 --------------------LQIPGTNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVF  199 (563)
Q Consensus       140 --------------------l~~~g~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~  199 (563)
                                          .....+++|.+.+..+.+ +.+++||..++..               ...+.||. +.|.
T Consensus       292 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d-g~i~vwd~~~~~~---------------~~~l~~H~-~~V~  354 (388)
T d1erja_         292 SKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD-RGVLFWDKKSGNP---------------LLMLQGHR-NSVI  354 (388)
T ss_dssp             -------CEEEEEECCSSCEEEEEECGGGCEEEEEETT-SEEEEEETTTCCE---------------EEEEECCS-SCEE
T ss_pred             cccccccceeeecccccceEEEEEECCCCCEEEEEeCC-CEEEEEECCCCcE---------------EEEEeCCC-CCEE
Confidence                                122245566666655555 5667888765532               22355665 6687


Q ss_pred             EEEc-------CCCCeeeeecCCCCCChhHH
Q 008510          200 DVDI-------GDGEPTRKLPYNRSDNPYDA  223 (563)
Q Consensus       200 ~vd~-------~dg~~~~~~~~n~~~~~w~~  223 (563)
                      ++.+       ++|..+++++.|+.+++|++
T Consensus       355 ~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~  385 (388)
T d1erja_         355 SVAVANGSSLGPEYNVFATGSGDCKARIWKY  385 (388)
T ss_dssp             EEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred             EEEEecCcccCCCCCEEEEEeCCCEEEEEee
Confidence            7764       47888999999999999986

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=4.3e-16  Score=152.93  Aligned_cols=199  Identities=24%  Similarity=0.370  Sum_probs=133.4

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc-CC-cee--------------
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK-DG-VCV--------------   64 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd-~~-~~~--------------   64 (563)
                      +|++|+|||.||+||+||+ ++++++++.+|.+.|++++|+|+ .+++|+.|+++++|+ .. ...              
T Consensus        26 ~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~-~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (342)
T d2ovrb2          26 CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN-IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMH  104 (342)
T ss_dssp             ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC-ccccceecccccccccccccceecccccceeEeeee
Confidence            5889999999999999999 89999999999999999999976 899999999999998 21 100              


Q ss_pred             ------------------------------------------------------------------EEEe-cCCcEEEEE
Q 008510           65 ------------------------------------------------------------------QSIE-HPGCVWDAK   77 (563)
Q Consensus        65 ------------------------------------------------------------------~~l~-h~~~V~~v~   77 (563)
                                                                                        ..+. |.  .....
T Consensus       105 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~--~~~~~  182 (342)
T d2ovrb2         105 LHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT--NRVYS  182 (342)
T ss_dssp             EETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCS--SCEEE
T ss_pred             cccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCcc--ccccc
Confidence                                                                              0000 11  12233


Q ss_pred             EccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccccc------ceeEEeeccCCceEEEeCCCCceeeec-c-----
Q 008510           78 FLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL------SQYKLCRKKVGGLKLEDLPGLEALQIP-G-----  144 (563)
Q Consensus        78 ~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v------~~~~~~~~~~~~i~~~d~~~~~~l~~~-g-----  144 (563)
                      +.+++. +++|+.||.|++||++.++....  ...+...+      ....+++..++.|++||....+..... +     
T Consensus       183 ~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~  260 (342)
T d2ovrb2         183 LQFDGIHVVSGSLDTSIRVWDVETGNCIHT--LTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQ  260 (342)
T ss_dssp             EEECSSEEEEEETTSCEEEEETTTCCEEEE--ECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCS
T ss_pred             ccCCCCEEEEEeCCCeEEEeecccceeeeE--ecccccceeEEecCCCEEEEEcCCCEEEEEecccccccccccccceee
Confidence            444666 88899999999999888774432  22222222      244567778899999998766543322 1     


Q ss_pred             ------cCCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCC
Q 008510          145 ------TNAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRS  217 (563)
Q Consensus       145 ------~~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~  217 (563)
                            ..++...+..+. ++.+.+||..+++....  +....        ..|+ ...|.++.+ ++|..++.+..|++
T Consensus       261 ~~~~~~~~~~~~~~s~s~-Dg~i~iwd~~tg~~i~~--~~~~~--------~~~~-~~~v~~v~~s~~~~~la~g~~dGt  328 (342)
T d2ovrb2         261 SAVTCLQFNKNFVITSSD-DGTVKLWDLKTGEFIRN--LVTLE--------SGGS-GGVVWRIRASNTKLVCAVGSRNGT  328 (342)
T ss_dssp             SCEEEEEECSSEEEEEET-TSEEEEEETTTCCEEEE--EEECT--------TGGG-TCEEEEEEECSSEEEEEEECSSSS
T ss_pred             eceeecccCCCeeEEEcC-CCEEEEEECCCCCEEEE--Eeccc--------CCCC-CCCEEEEEECCCCCEEEEEeCCCC
Confidence                  123334444443 46677888776643321  11110        1123 366999999 88888888888876

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=4.2e-16  Score=154.97  Aligned_cols=208  Identities=13%  Similarity=0.067  Sum_probs=146.2

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCce--------eEEEecCCCcEEEEEEcCCC-eEEEEeC--CCcEEEEc--CCceeEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQV--------LMEMVGHTAIVYSIDSHASG-LIVSGSE--DRFAKIWK--DGVCVQSI   67 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~--------i~~l~gH~~~V~~v~~~p~g-~l~s~s~--D~tvriWd--~~~~~~~l   67 (563)
                      +|.+++||+.||+|++||+ .++.        ...+..|.+.|.+++|+++| .+++++.  |+.+++|+  ++++++.+
T Consensus        76 ~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  155 (325)
T d1pgua1          76 GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEV  155 (325)
T ss_dssp             TCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEEC
T ss_pred             CCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceee
Confidence            5689999999999999998 3322        23456799999999999999 6666654  67899998  78889888


Q ss_pred             e-cCCcEEEEEEccCCc--EEEEeCCCcEEEEEcCCCceecee-eecccccc---------cceeEEeeccCCceEEEeC
Q 008510           68 E-HPGCVWDAKFLENGD--IVTACSDGVTRIWTVHSDKVADSL-ELEAYASE---------LSQYKLCRKKVGGLKLEDL  134 (563)
Q Consensus        68 ~-h~~~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~-~~~~~~~~---------v~~~~~~~~~~~~i~~~d~  134 (563)
                      . |...|.+++|+|++.  +++++.|+.|++||..+.+..... ....+...         -....+++..++.|++||+
T Consensus       156 ~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~  235 (325)
T d1pgua1         156 SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG  235 (325)
T ss_dssp             CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEET
T ss_pred             eecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeee
Confidence            8 899999999999886  678999999999999877643221 11222221         1245566788999999999


Q ss_pred             CCCceeeec-cc-------------CCCeEEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCc-ccCcEE
Q 008510          135 PGLEALQIP-GT-------------NAGQTKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGI-QYDYVF  199 (563)
Q Consensus       135 ~~~~~l~~~-g~-------------~dg~~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~-~~d~v~  199 (563)
                      ...+.+... ++             ++|.+.+..+.| +.+.+||..+++..+.  ...+           ++ ......
T Consensus       236 ~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D-~~i~iwd~~~~~~~~~--~~~~-----------~~~~~~~~~  301 (325)
T d1pgua1         236 KSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGAD-ATIRVWDVTTSKCVQK--WTLD-----------KQQLGNQQV  301 (325)
T ss_dssp             TTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETT-SEEEEEETTTTEEEEE--EECC-----------TTCGGGCEE
T ss_pred             ccccccccccccccccccceeeeeccCCCEEEEEeCC-CeEEEEECCCCCEEEE--EEec-----------CCcccCeEE
Confidence            877654332 11             456666655555 5678899877754322  1111           11 113344


Q ss_pred             EEEcCCCCeeeeecCCCCCChhHH
Q 008510          200 DVDIGDGEPTRKLPYNRSDNPYDA  223 (563)
Q Consensus       200 ~vd~~dg~~~~~~~~n~~~~~w~~  223 (563)
                      .+.+.++..+++++.|+.+++|++
T Consensus       302 ~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         302 GVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEEEETTEEEEEETTSCEEEEET
T ss_pred             EEEECCCCEEEEEECCCEEEEEEC
Confidence            555544456899999999999974

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.68  E-value=7.3e-16  Score=151.77  Aligned_cols=102  Identities=17%  Similarity=0.313  Sum_probs=92.6

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe---cCCcEEE
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE---HPGCVWD   75 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~---h~~~V~~   75 (563)
                      +..+++|+.|++|++||+ +++++.++.+|.+.|++++|+|++ .+++|+.|++|++|+  ....+..+.   +...|.+
T Consensus       196 ~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~  275 (340)
T d1tbga_         196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS  275 (340)
T ss_dssp             SSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred             cceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEE
Confidence            578999999999999999 899999999999999999999999 999999999999999  566666665   5568999


Q ss_pred             EEEccCCc-EEEEeCCCcEEEEEcCCCcee
Q 008510           76 AKFLENGD-IVTACSDGVTRIWTVHSDKVA  104 (563)
Q Consensus        76 v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~  104 (563)
                      ++|+|+|+ +++|+.||.|++||+.+++..
T Consensus       276 ~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~  305 (340)
T d1tbga_         276 VSFSKSGRLLLAGYDDFNCNVWDALKADRA  305 (340)
T ss_dssp             EEECSSSCEEEEEETTSCEEEEETTTCCEE
T ss_pred             EEECCCCCEEEEEECCCEEEEEECCCCcEE
Confidence            99999999 899999999999999988743

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.67  E-value=1.1e-15  Score=148.96  Aligned_cols=189  Identities=15%  Similarity=0.157  Sum_probs=135.1

Q ss_pred             CceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe--cCCcEEEEEEccCCcEEEEeCCCcEEEE
Q 008510           22 GQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE--HPGCVWDAKFLENGDIVTACSDGVTRIW   96 (563)
Q Consensus        22 g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~--h~~~V~~v~~~p~g~i~sgs~Dg~Irvw   96 (563)
                      |+..+++.||.+.|++++|+|+| .++|||.|++|++||  ++++++++.  |...|++++|+|+|++++++.|+.+++|
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~   81 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVV   81 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEE
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEe
Confidence            67789999999999999999999 999999999999999  788888875  7889999999999999899999999999


Q ss_pred             EcCCCceecee-eeccccccc-------ceeEEeeccCCceEEEeCCCC-------ceeeecccCCCeEEEEecCCCeEE
Q 008510           97 TVHSDKVADSL-ELEAYASEL-------SQYKLCRKKVGGLKLEDLPGL-------EALQIPGTNAGQTKVVREGDNGVA  161 (563)
Q Consensus        97 d~~~~~~~~~~-~~~~~~~~v-------~~~~~~~~~~~~i~~~d~~~~-------~~l~~~g~~dg~~~l~~~~~~~~~  161 (563)
                      +.......... ....+...+       ....+....++.+.+|+....       .......++++...++...+ +.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-g~i  160 (299)
T d1nr0a2          82 PAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQD-SKV  160 (299)
T ss_dssp             CSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETT-SEE
T ss_pred             ccCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence            98654321111 111111111       122233445567888886422       11222356677776666655 566


Q ss_pred             EEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHHHH
Q 008510          162 YSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAADK  226 (563)
Q Consensus       162 ~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~~  226 (563)
                      ++||...+....+.              ..+|. +.|.++.+ +++..++....|+.+.+|++...
T Consensus       161 ~~~d~~~~~~~~~~--------------~~~~~-~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~  211 (299)
T d1nr0a2         161 HVYKLSGASVSEVK--------------TIVHP-AEITSVAFSNNGAFLVATDQSRKVIPYSVANN  211 (299)
T ss_dssp             EEEEEETTEEEEEE--------------EEECS-SCEEEEEECTTSSEEEEEETTSCEEEEEGGGT
T ss_pred             cccccccccccccc--------------ccccc-cccccccccccccccccccccccccccccccc
Confidence            78887655433211              11222 56899999 89999999999999999998653

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=2.6e-16  Score=160.62  Aligned_cols=112  Identities=20%  Similarity=0.339  Sum_probs=94.4

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeEE------EecCCCcEEEEEEcCCC-eEEEEeCCCc---EEEEc--CCceeEEEe-
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLME------MVGHTAIVYSIDSHASG-LIVSGSEDRF---AKIWK--DGVCVQSIE-   68 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~~------l~gH~~~V~~v~~~p~g-~l~s~s~D~t---vriWd--~~~~~~~l~-   68 (563)
                      +.+|+||+.||+|++||+ +++++..      +.+|...|.+++|+|+| .|++||.|++   |++||  ++++++++. 
T Consensus       195 dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~  274 (393)
T d1sq9a_         195 RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSV  274 (393)
T ss_dssp             TSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECB
T ss_pred             CCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeecc
Confidence            458999999999999999 7776654      45799999999999999 9999999985   89999  778877763 


Q ss_pred             -------------cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeeccccccc
Q 008510           69 -------------HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL  116 (563)
Q Consensus        69 -------------h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v  116 (563)
                                   |.+.|++++|+|+|+ |++||.|++||+||+++++...  .+.+|.+.+
T Consensus       275 ~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~--~l~gH~~~v  334 (393)
T d1sq9a_         275 PTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERIT--TLNMHCDDI  334 (393)
T ss_dssp             C--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE--EEECCGGGC
T ss_pred             ccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEE--EECCcCCcc
Confidence                         888999999999999 9999999999999999997443  445555544

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=6.8e-16  Score=151.06  Aligned_cols=221  Identities=9%  Similarity=-0.036  Sum_probs=133.9

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCce---eEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCceeEEEe-cCC-
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQV---LMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIE-HPG-   71 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~---i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~~~l~-h~~-   71 (563)
                      +|++|++||.||+||+||+ .+..   +....+|.+.|.+++|+|++  .+++|+.|++|++|+  ......... +.. 
T Consensus        22 ~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~  101 (342)
T d1yfqa_          22 SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEAN  101 (342)
T ss_dssp             GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCC
T ss_pred             CCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccccccc
Confidence            4789999999999999998 4432   33344799999999999875  799999999999999  444444444 333 


Q ss_pred             cEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceecee--eecccc----------cccceeEEeeccCCceEEEeCCCCc
Q 008510           72 CVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSL--ELEAYA----------SELSQYKLCRKKVGGLKLEDLPGLE  138 (563)
Q Consensus        72 ~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~--~~~~~~----------~~v~~~~~~~~~~~~i~~~d~~~~~  138 (563)
                      ......+.+++. +++++.|+.+++||++++......  ......          .......+.+..++.+++|+++...
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  181 (342)
T d1yfqa_         102 LGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCE  181 (342)
T ss_dssp             SCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCT
T ss_pred             cccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCc
Confidence            444555555555 899999999999998754322111  111110          1122345567788999999997554


Q ss_pred             eeeec---------------ccCCCeEEEEecCCCeEEEEEecccce--EEEeCcEeeCCCCCCCceeecCcccCcEEEE
Q 008510          139 ALQIP---------------GTNAGQTKVVREGDNGVAYSWDMKEQK--WDKLGEVVDGPDDGMNRPILDGIQYDYVFDV  201 (563)
Q Consensus       139 ~l~~~---------------g~~dg~~~l~~~~~~~~~~~wd~~~~~--w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~v  201 (563)
                      .....               ...++...+..+.+ +.+.+|+.....  +...........  .......++. ..|.++
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-g~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~v~~l  257 (342)
T d1yfqa_         182 DDNGTIEESGLKYQIRDVALLPKEQEGYACSSID-GRVAVEFFDDQGDDYNSSKRFAFRCH--RLNLKDTNLA-YPVNSI  257 (342)
T ss_dssp             TCCCEEEECSCSSCEEEEEECSGGGCEEEEEETT-SEEEEEECCTTCCSTTCTTCEEEECC--CCCTTCCSSC-CCEEEE
T ss_pred             ccceeeeecccccceeeeEeecCCCCEEEeecCC-CeEEEEEecCCcceeeccccceeeee--eeccCCCccc-ccceeE
Confidence            32111               11222333333333 333344332211  000000000000  0001112232 347889


Q ss_pred             Ec-CCCCeeeeecCCCCCChhHHHHH
Q 008510          202 DI-GDGEPTRKLPYNRSDNPYDAADK  226 (563)
Q Consensus       202 d~-~dg~~~~~~~~n~~~~~w~~a~~  226 (563)
                      .+ ++|..+++++.|+.+++|++..+
T Consensus       258 ~~sp~~~~lasg~~Dg~v~vWD~~~~  283 (342)
T d1yfqa_         258 EFSPRHKFLYTAGSDGIISCWNLQTR  283 (342)
T ss_dssp             EECTTTCCEEEEETTSCEEEEETTTT
T ss_pred             EecCCccEEEEECCCCEEEEEECCCC
Confidence            99 89999999999999999998643

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=2e-14  Score=138.94  Aligned_cols=151  Identities=21%  Similarity=0.339  Sum_probs=120.3

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA   76 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v   76 (563)
                      +++.+++++.|+.+++|++ +++.+.++.+|...+.+++++|++ .+++++.|++|++|+  +++.+..+. |...+.++
T Consensus       112 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~  191 (317)
T d1vyhc1         112 NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI  191 (317)
T ss_dssp             SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred             CCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEE
Confidence            4788999999999999999 899999999999999999999999 999999999999999  778888887 88899999


Q ss_pred             EEccCC--------------------c-EEEEeCCCcEEEEEcCCCceeceeeeccccccc--------ceeEEeeccCC
Q 008510           77 KFLENG--------------------D-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL--------SQYKLCRKKVG  127 (563)
Q Consensus        77 ~~~p~g--------------------~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v--------~~~~~~~~~~~  127 (563)
                      +++|++                    . +++|+.|+.|++||.++++....  +..+...+        ..+.+++..++
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~s~~~dg  269 (317)
T d1vyhc1         192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT--LVGHDNWVRGVLFHSGGKFILSCADDK  269 (317)
T ss_dssp             EECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEE--EECCSSCEEEEEECSSSSCEEEEETTT
T ss_pred             EEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEE--EeCCCCCEEEEEECCCCCEEEEEECCC
Confidence            998753                    3 78899999999999999875432  33333332        24456778889


Q ss_pred             ceEEEeCCCCceeeec-ccCCCeEEEEe
Q 008510          128 GLKLEDLPGLEALQIP-GTNAGQTKVVR  154 (563)
Q Consensus       128 ~i~~~d~~~~~~l~~~-g~~dg~~~l~~  154 (563)
                      .|++||+...+.+... +|.+....+..
T Consensus       270 ~i~iwd~~~~~~~~~~~~h~~~V~~~~~  297 (317)
T d1vyhc1         270 TLRVWDYKNKRCMKTLNAHEHFVTSLDF  297 (317)
T ss_dssp             EEEEECCTTSCCCEEEECCSSCEEEEEE
T ss_pred             eEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence            9999999877655443 44444333333

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.60  E-value=3.2e-14  Score=141.00  Aligned_cols=139  Identities=17%  Similarity=0.143  Sum_probs=109.9

Q ss_pred             CCCEEEEEEC--CCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCceeEEEe----cC
Q 008510            2 PGVGIISASH--DCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIE----HP   70 (563)
Q Consensus         2 ~g~~l~s~s~--DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~~~l~----h~   70 (563)
                      +|+++++++.  |+.+++|+. +++++.++.+|...|.+++|+|++  .+++++.|+.+++|+  ..+....+.    |.
T Consensus       126 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~  205 (325)
T d1pgua1         126 EGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQG  205 (325)
T ss_dssp             TSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTT
T ss_pred             CCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCC
Confidence            4677777765  678999999 899999999999999999999987  588999999999999  555555553    56


Q ss_pred             CcEEEEEEccC-Cc-EEEEeCCCcEEEEEcCCCceeceeeeccccccc-----------ceeEEeeccCCceEEEeCCCC
Q 008510           71 GCVWDAKFLEN-GD-IVTACSDGVTRIWTVHSDKVADSLELEAYASEL-----------SQYKLCRKKVGGLKLEDLPGL  137 (563)
Q Consensus        71 ~~V~~v~~~p~-g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v-----------~~~~~~~~~~~~i~~~d~~~~  137 (563)
                      ..|++++|+|+ ++ +++|+.|+.|++||.++++....  +..+...+           ....+++..|+.|++||++..
T Consensus       206 ~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~--l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~  283 (325)
T d1pgua1         206 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKY--IEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS  283 (325)
T ss_dssp             CCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEE--CCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTT
T ss_pred             CccEEeeeccccceeccccccccceeeeeecccccccc--ccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCC
Confidence            68999999997 45 89999999999999998875432  23232222           235667788899999999877


Q ss_pred             ceeee
Q 008510          138 EALQI  142 (563)
Q Consensus       138 ~~l~~  142 (563)
                      +.+..
T Consensus       284 ~~~~~  288 (325)
T d1pgua1         284 KCVQK  288 (325)
T ss_dssp             EEEEE
T ss_pred             CEEEE
Confidence            66543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.59  E-value=7.4e-15  Score=149.66  Aligned_cols=103  Identities=14%  Similarity=0.237  Sum_probs=83.7

Q ss_pred             CCEEEEEECCCcEEEEcC-C-Cc-----------------eeEEEecCCCcEEEEEEcCCCeEEEEeCCCcEEEEc--CC
Q 008510            3 GVGIISASHDCTIRLWAL-T-GQ-----------------VLMEMVGHTAIVYSIDSHASGLIVSGSEDRFAKIWK--DG   61 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~-g~-----------------~i~~l~gH~~~V~~v~~~p~g~l~s~s~D~tvriWd--~~   61 (563)
                      +.++++++.||+|++|++ . +.                 .......|...+.+++|+|++.+++|+.|++|+|||  ++
T Consensus       136 ~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~  215 (393)
T d1sq9a_         136 SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTL  215 (393)
T ss_dssp             CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTT
T ss_pred             ccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeeccc
Confidence            568999999999999997 1 10                 111223566779999999999999999999999999  67


Q ss_pred             ceeEEEe-------cCCcEEEEEEccCCc-EEEEeCCCc---EEEEEcCCCceec
Q 008510           62 VCVQSIE-------HPGCVWDAKFLENGD-IVTACSDGV---TRIWTVHSDKVAD  105 (563)
Q Consensus        62 ~~~~~l~-------h~~~V~~v~~~p~g~-i~sgs~Dg~---Irvwd~~~~~~~~  105 (563)
                      +++..+.       |...|++++|+|+|+ |++|+.|++   |++||+.+++...
T Consensus       216 ~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~  270 (393)
T d1sq9a_         216 RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIG  270 (393)
T ss_dssp             EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred             ccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeee
Confidence            7665543       778999999999999 899999874   9999999987543

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.53  E-value=2.5e-13  Score=134.70  Aligned_cols=178  Identities=13%  Similarity=0.037  Sum_probs=121.9

Q ss_pred             CCCEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCC--cEEEEc-CCceeEEEe-cCCcEEEE
Q 008510            2 PGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDR--FAKIWK-DGVCVQSIE-HPGCVWDA   76 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~--tvriWd-~~~~~~~l~-h~~~V~~v   76 (563)
                      ||+++++++ +|.|++||..+..+..+ +|...|.+++|+||| .+++++.|.  .|++|| .+...+.+. |...|+++
T Consensus        14 dG~~~a~~~-~g~v~v~d~~~~~~~~~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~~~   91 (360)
T d1k32a3          14 DGDLIAFVS-RGQAFIQDVSGTYVLKV-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAM   91 (360)
T ss_dssp             GGGCEEEEE-TTEEEEECTTSSBEEEC-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEE
T ss_pred             CCCEEEEEE-CCeEEEEECCCCcEEEc-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCceEEee
Confidence            688999887 57999999944434444 799999999999999 777666553  799999 444444444 88899999


Q ss_pred             EEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceeeecccCCCeEEEEec
Q 008510           77 KFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVVRE  155 (563)
Q Consensus        77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg~~~l~~~  155 (563)
                      +|+|+|+ +++++.|+.+++|+..+++....                         .............++||...++..
T Consensus        92 ~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~spdg~~la~~~  146 (360)
T d1k32a3          92 GVDRNGKFAVVANDRFEIMTVDLETGKPTVI-------------------------ERSREAMITDFTISDNSRFIAYGF  146 (360)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTCCEEEE-------------------------EECSSSCCCCEEECTTSCEEEEEE
T ss_pred             eecccccccceeccccccccccccccceeee-------------------------eecccccccchhhccceeeeeeec
Confidence            9999999 99999999999999998873321                         111111122233455665554432


Q ss_pred             ---------CCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHH
Q 008510          156 ---------GDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDA  223 (563)
Q Consensus       156 ---------~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~  223 (563)
                               .....+++|+...+.-..+               ..++  ..+..+.+ +||+.++..+.+..+..|+.
T Consensus       147 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~---------------~~~~--~~~~~~~~spdg~~l~~~s~~~~~~~~d~  207 (360)
T d1k32a3         147 PLKHGETDGYVMQAIHVYDMEGRKIFAA---------------TTEN--SHDYAPAFDADSKNLYYLSYRSLDPSPDR  207 (360)
T ss_dssp             EECSSTTCSCCEEEEEEEETTTTEEEEC---------------SCSS--SBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred             cccccceeeccccceeeeccccCceeee---------------cccc--cccccccccCCCCEEEEEeCCCceEcccc
Confidence                     2223466777655432111               1111  33566667 89999999999888888875

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=2.5e-13  Score=133.45  Aligned_cols=150  Identities=21%  Similarity=0.261  Sum_probs=117.6

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDA   76 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v   76 (563)
                      +++.+++++.|+.|++||. +++.+....+|...+.++.++|++ .+++++.|++|++|+  ++.++..+. |...|.++
T Consensus       170 ~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~  249 (355)
T d1nexb2         170 HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLL  249 (355)
T ss_dssp             ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEE
T ss_pred             ccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccccccccccccc
Confidence            3678999999999999999 889999999999999999999998 999999999999999  788888888 88999999


Q ss_pred             EEccCCcEEEEeCCCcEEEEEcCCCceeceeeecccccc--------cceeEEeeccCCceEEEeCCCCceeee--cccC
Q 008510           77 KFLENGDIVTACSDGVTRIWTVHSDKVADSLELEAYASE--------LSQYKLCRKKVGGLKLEDLPGLEALQI--PGTN  146 (563)
Q Consensus        77 ~~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~~i~~~d~~~~~~l~~--~g~~  146 (563)
                      +++++ .+++|+.||.|++||+++.....    ..+...        .....++...++.|++||+++++.+..  .++.
T Consensus       250 ~~~~~-~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~~~~~  324 (355)
T d1nexb2         250 RLSDK-FLVSAAADGSIRGWDANDYSRKF----SYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDA  324 (355)
T ss_dssp             EECSS-EEEEECTTSEEEEEETTTCCEEE----EEECTTCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCCSCTTTTC
T ss_pred             ccccc-eeeeeecccccccccccccceec----ccccCCceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEEEEecCCC
Confidence            98642 49999999999999999876321    111111        123344556689999999988777643  2555


Q ss_pred             CCeEEEEecC
Q 008510          147 AGQTKVVREG  156 (563)
Q Consensus       147 dg~~~l~~~~  156 (563)
                      +....+..++
T Consensus       325 ~~V~~v~~~~  334 (355)
T d1nexb2         325 DQIWSVNFKG  334 (355)
T ss_dssp             SEEEEEEEET
T ss_pred             CCEEEEEEcC
Confidence            4444443333

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=8.6e-13  Score=128.81  Aligned_cols=136  Identities=26%  Similarity=0.500  Sum_probs=106.8

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEE
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAK   77 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~   77 (563)
                      +..+++++.|++|++||. .++++.++.+|...+..+.+  ++ .+++|+.|++|++||  .+++++.+. |...|.+++
T Consensus       147 ~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~  224 (342)
T d2ovrb2         147 GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME  224 (342)
T ss_dssp             SSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEE
T ss_pred             cceeeeecCCCeEEEeecccceeeEEEcCcccccccccC--CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEe
Confidence            456889999999999999 78899999999998887766  45 899999999999999  778888887 888999888


Q ss_pred             EccCCcEEEEeCCCcEEEEEcCCCceeceeee-ccccccc------ceeEEeeccCCceEEEeCCCCceee
Q 008510           78 FLENGDIVTACSDGVTRIWTVHSDKVADSLEL-EAYASEL------SQYKLCRKKVGGLKLEDLPGLEALQ  141 (563)
Q Consensus        78 ~~p~g~i~sgs~Dg~Irvwd~~~~~~~~~~~~-~~~~~~v------~~~~~~~~~~~~i~~~d~~~~~~l~  141 (563)
                      ++++ .+++|+.||.|++||....+....... ..+...+      ....+++..+|.|++||+.+++.+.
T Consensus       225 ~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~  294 (342)
T d2ovrb2         225 LKDN-ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIR  294 (342)
T ss_dssp             EETT-EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             cCCC-EEEEEcCCCEEEEEecccccccccccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCEEE
Confidence            7653 499999999999999988764322111 1111111      2455677889999999998776654

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.48  E-value=1.2e-13  Score=133.43  Aligned_cols=97  Identities=19%  Similarity=0.237  Sum_probs=84.6

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeE-EEecCCCcEEEEEEcCC----------C-eEEEEeCCCcEEEEc--C-CceeE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLM-EMVGHTAIVYSIDSHAS----------G-LIVSGSEDRFAKIWK--D-GVCVQ   65 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~-~l~gH~~~V~~v~~~p~----------g-~l~s~s~D~tvriWd--~-~~~~~   65 (563)
                      +|.+|++|+.||.|++||. +++... .+.+|...|.+++|+|.          + .++||+.|++|+||+  . .+.+.
T Consensus       173 ~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~  252 (287)
T d1pgua2         173 SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK  252 (287)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEE
T ss_pred             CccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEE
Confidence            5789999999999999999 666544 46799999999999873          3 699999999999999  3 55666


Q ss_pred             EEe-cCCcEEEEEEccCCcEEEEeCCCcEEEEEc
Q 008510           66 SIE-HPGCVWDAKFLENGDIVTACSDGVTRIWTV   98 (563)
Q Consensus        66 ~l~-h~~~V~~v~~~p~g~i~sgs~Dg~Irvwd~   98 (563)
                      .+. |...|++++|+|++.+++++.|+.||+|++
T Consensus       253 ~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         253 ALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV  286 (287)
T ss_dssp             ETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred             EeCCCCCCeEEEEECCCCEEEEEECCCeEEEEEE
Confidence            666 999999999999988999999999999996

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.45  E-value=6.4e-13  Score=128.11  Aligned_cols=101  Identities=15%  Similarity=0.097  Sum_probs=79.7

Q ss_pred             CCCEEEEEECCC-cEEEEcC-CCceeEEEe-cCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEE-Ee-cCCcE
Q 008510            2 PGVGIISASHDC-TIRLWAL-TGQVLMEMV-GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQS-IE-HPGCV   73 (563)
Q Consensus         2 ~g~~l~s~s~Dg-tIrlWd~-~g~~i~~l~-gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~-l~-h~~~V   73 (563)
                      +++.++.++.|+ .|++|++ +.+....+. .|.+.|.+++|+|++ .+++|+.||.|++||  ++..... +. |...|
T Consensus       129 ~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v  208 (287)
T d1pgua2         129 SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKI  208 (287)
T ss_dssp             CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCE
T ss_pred             cCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccccccccccc
Confidence            456777777765 7999998 444444443 578899999999999 999999999999999  4554433 23 88899


Q ss_pred             EEEEEccCC----------c-EEEEeCCCcEEEEEcCCCc
Q 008510           74 WDAKFLENG----------D-IVTACSDGVTRIWTVHSDK  102 (563)
Q Consensus        74 ~~v~~~p~g----------~-i~sgs~Dg~Irvwd~~~~~  102 (563)
                      .+++|+|++          . +++|+.|++|++||++.+.
T Consensus       209 ~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~  248 (287)
T d1pgua2         209 NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM  248 (287)
T ss_dssp             EEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT
T ss_pred             ceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCC
Confidence            999998743          4 8999999999999987643

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.44  E-value=1.8e-12  Score=133.88  Aligned_cols=149  Identities=11%  Similarity=-0.043  Sum_probs=104.0

Q ss_pred             EEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCc--eeEEEe----cCCcEEE
Q 008510            6 IISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGV--CVQSIE----HPGCVWD   75 (563)
Q Consensus         6 l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~--~~~~l~----h~~~V~~   75 (563)
                      +++.+.||+|++||. ++++++++..|. .++.++|+||| ++++++.|++|++||  +++  ....+.    |.+.+++
T Consensus        35 ~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s  113 (432)
T d1qksa2          35 SVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETS  113 (432)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEEC
T ss_pred             EEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEe
Confidence            689999999999999 899999998874 69999999999 899999999999999  544  333443    4456777


Q ss_pred             EEEccCCc-E-EEEeCCCcEEEEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCceeeecccCCCeEEEE
Q 008510           76 AKFLENGD-I-VTACSDGVTRIWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEALQIPGTNAGQTKVV  153 (563)
Q Consensus        76 v~~~p~g~-i-~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~g~~dg~~~l~  153 (563)
                      ++|+|||+ + +++..++.|++||..+++........  ...+....+          .  +......+..+++|...++
T Consensus       114 ~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~--~~~~~~~~~----------~--~~~~~~~v~~s~dg~~~~v  179 (432)
T d1qksa2         114 KMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTR--GMTYDEQEY----------H--PEPRVAAILASHYRPEFIV  179 (432)
T ss_dssp             CSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECC--EECTTTCCE----------E--SCCCEEEEEECSSSSEEEE
T ss_pred             cccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccC--Cccccceec----------c--CCCceeEEEECCCCCEEEE
Confidence            78888998 4 78888999999999998754332221  111111110          0  1122233345666766666


Q ss_pred             ecCCCeEEEEEecccc
Q 008510          154 REGDNGVAYSWDMKEQ  169 (563)
Q Consensus       154 ~~~~~~~~~~wd~~~~  169 (563)
                      ...+...+..|+....
T Consensus       180 s~~~~~~i~~~d~~~~  195 (432)
T d1qksa2         180 NVKETGKILLVDYTDL  195 (432)
T ss_dssp             EETTTTEEEEEETTCS
T ss_pred             EEccCCeEEEEEccCC
Confidence            6655566666765543

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=4e-12  Score=120.97  Aligned_cols=77  Identities=27%  Similarity=0.483  Sum_probs=66.0

Q ss_pred             eeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEc
Q 008510           24 VLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTV   98 (563)
Q Consensus        24 ~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~   98 (563)
                      .+....+|...|+|+++  +| .|+|||.||+|||||  ++++++++. |.+.|++++|  +++ +++|+.|+.|++|++
T Consensus         7 ~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~   82 (293)
T d1p22a2           7 RIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDV   82 (293)
T ss_dssp             CEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEES
T ss_pred             EEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccc
Confidence            34455678889998765  66 999999999999999  889999998 9999999987  556 999999999999999


Q ss_pred             CCCcee
Q 008510           99 HSDKVA  104 (563)
Q Consensus        99 ~~~~~~  104 (563)
                      ..+...
T Consensus        83 ~~~~~~   88 (293)
T d1p22a2          83 NTGEML   88 (293)
T ss_dssp             SSCCEE
T ss_pred             cccccc
Confidence            887643

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.42  E-value=8.5e-12  Score=128.11  Aligned_cols=99  Identities=10%  Similarity=-0.102  Sum_probs=82.6

Q ss_pred             EEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeE--EEe----cCCcEE
Q 008510            5 GIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQ--SIE----HPGCVW   74 (563)
Q Consensus         5 ~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~--~l~----h~~~V~   74 (563)
                      ++++.+.||+|++||+ +++++.++..|. .+++++|+||| .+++++.|++|++||  ++++..  .+.    |.+.+.
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~  112 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVES  112 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEE
Confidence            5688999999999999 899999999875 58999999999 899999999999999  565443  333    445677


Q ss_pred             EEEEccCCc-E-EEEeCCCcEEEEEcCCCcee
Q 008510           75 DAKFLENGD-I-VTACSDGVTRIWTVHSDKVA  104 (563)
Q Consensus        75 ~v~~~p~g~-i-~sgs~Dg~Irvwd~~~~~~~  104 (563)
                      +++|+|||+ + +++..++.+++||..+++..
T Consensus       113 s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~  144 (426)
T d1hzua2         113 SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPK  144 (426)
T ss_dssp             CCSTTCTTTEEEEEEEESSEEEEEETTTCCEE
T ss_pred             eeeecCCCCEEEEeecCCCeEEEEcCCcccee
Confidence            888889998 5 56668999999999988754

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.41  E-value=1e-12  Score=127.86  Aligned_cols=114  Identities=15%  Similarity=0.071  Sum_probs=84.9

Q ss_pred             ceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCc----eeEEEecCCcEEEEEEccCCc--EEEEeCCCcE
Q 008510           23 QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGV----CVQSIEHPGCVWDAKFLENGD--IVTACSDGVT   93 (563)
Q Consensus        23 ~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~----~~~~l~h~~~V~~v~~~p~g~--i~sgs~Dg~I   93 (563)
                      +.+...++|.+.|++|+|+|++ .|++||.|++|||||  .+.    +...+.|.+.|.+++|+|++.  +++|+.||.|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            3566678999999999999999 999999999999999  332    233445999999999999754  8999999999


Q ss_pred             EEEEcCCCceeceeeecccc-------cccceeEEeeccCCceEEEeCCC
Q 008510           94 RIWTVHSDKVADSLELEAYA-------SELSQYKLCRKKVGGLKLEDLPG  136 (563)
Q Consensus        94 rvwd~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~i~~~d~~~  136 (563)
                      ++|+................       ..-....+....++.+++||++.
T Consensus        82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~  131 (342)
T d1yfqa_          82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRN  131 (342)
T ss_dssp             EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHH
T ss_pred             eeeecccccccccccccccccccccccccccccccccccccccceeeccc
Confidence            99999877633221111100       11124455667789999999753

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.39  E-value=5.2e-12  Score=124.86  Aligned_cols=102  Identities=8%  Similarity=0.049  Sum_probs=85.7

Q ss_pred             CCCEEEEEECCC--cEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-cCCcEEE
Q 008510            2 PGVGIISASHDC--TIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-HPGCVWD   75 (563)
Q Consensus         2 ~g~~l~s~s~Dg--tIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-h~~~V~~   75 (563)
                      ||++|+++|.|.  +|++||..+..+..+.+|...|.+++|+|+| .+++++.|+.+++|+  ++++...+. |...+.+
T Consensus        53 Dg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (360)
T d1k32a3          53 DTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITD  132 (360)
T ss_dssp             SSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCC
T ss_pred             CCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccc
Confidence            578888877664  7999999666667788999999999999999 999999999999999  677777777 7779999


Q ss_pred             EEEccCCc-EEEEe----------CCCcEEEEEcCCCce
Q 008510           76 AKFLENGD-IVTAC----------SDGVTRIWTVHSDKV  103 (563)
Q Consensus        76 v~~~p~g~-i~sgs----------~Dg~Irvwd~~~~~~  103 (563)
                      ++|+|+|+ |+.++          .++.+++||..+++.
T Consensus       133 ~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~  171 (360)
T d1k32a3         133 FTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI  171 (360)
T ss_dssp             EEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE
T ss_pred             hhhccceeeeeeeccccccceeeccccceeeeccccCce
Confidence            99999999 66443          345699999998764

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.27  E-value=3e-10  Score=108.94  Aligned_cols=206  Identities=11%  Similarity=0.133  Sum_probs=137.6

Q ss_pred             CCCEE-EEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc--CCceeEEEecCCcEEE
Q 008510            2 PGVGI-ISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWD   75 (563)
Q Consensus         2 ~g~~l-~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~   75 (563)
                      ||+++ ++++.|++|++||+ ++++++++..|.. +..+++++++  .++++..++.+++|+  +++....+.+.....+
T Consensus        42 dG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (301)
T d1l0qa2          42 DGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLG  120 (301)
T ss_dssp             TSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEE
T ss_pred             CCCEEEEEECCCCEEEEEECCCCceeeeeecccc-ccccccccccccccccccccceeeecccccceeeeeccccccceE
Confidence            57766 57778999999999 8999999988765 5889999998  566777888999999  7778888887788999


Q ss_pred             EEEccCCc--EEEEeCCCcEEEEEcCCCceeceeeeccc------ccccceeEEeeccCCceEEEeCCCCceeee-----
Q 008510           76 AKFLENGD--IVTACSDGVTRIWTVHSDKVADSLELEAY------ASELSQYKLCRKKVGGLKLEDLPGLEALQI-----  142 (563)
Q Consensus        76 v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~-----  142 (563)
                      ++++|+|.  ++++..++.+++|+..+.+..........      ...-..........+.+.+|+.........     
T Consensus       121 ~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (301)
T d1l0qa2         121 LALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA  200 (301)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred             EEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeeccccceeeecccccccccccccceeeeecccccC
Confidence            99999998  46677789999999998875433221111      111112223333445666777665543322     


Q ss_pred             -----cccCCCeEEEEecC--CCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcccCcEEEEEc-CCCCee-eeec
Q 008510          143 -----PGTNAGQTKVVREG--DNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQYDYVFDVDI-GDGEPT-RKLP  213 (563)
Q Consensus       143 -----~g~~dg~~~l~~~~--~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~-~~~~  213 (563)
                           ..+.+|...++...  ....++.||..++....  .+            ..|   ..+..+.+ +||+.+ ....
T Consensus       201 ~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~--~~------------~~~---~~~~~va~spdg~~l~va~~  263 (301)
T d1l0qa2         201 APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITA--RI------------PVG---PDPAGIAVTPDGKKVYVALS  263 (301)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEE--EE------------ECC---SSEEEEEECTTSSEEEEEET
T ss_pred             CcceeeccccccccccccccceeeeeeeeecCCCeEEE--EE------------cCC---CCEEEEEEeCCCCEEEEEEC
Confidence                 23445555444332  22456677765553211  11            111   23678888 888876 4777


Q ss_pred             CCCCCChhHHHH
Q 008510          214 YNRSDNPYDAAD  225 (563)
Q Consensus       214 ~n~~~~~w~~a~  225 (563)
                      .++.+.+|+++.
T Consensus       264 ~~~~i~v~D~~t  275 (301)
T d1l0qa2         264 FCNTVSVIDTAT  275 (301)
T ss_dssp             TTTEEEEEETTT
T ss_pred             CCCeEEEEECCC
Confidence            888888888753

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.21  E-value=1.9e-09  Score=103.08  Aligned_cols=163  Identities=11%  Similarity=0.063  Sum_probs=113.1

Q ss_pred             EEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eE-EEEeCCCcEEEEc--CCceeEEEecCCcEEEEEEcc
Q 008510            6 IISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LI-VSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKFLE   80 (563)
Q Consensus         6 l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l-~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~~~p   80 (563)
                      +++++.|++|++||+ +++.++++... ..+..++|+|+| ++ ++++.+++|++||  ++++++++.....+..+++++
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~   83 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSP   83 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECT
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccccccccccc
Confidence            567789999999999 89999998754 457899999999 54 6788899999999  788888888556789999999


Q ss_pred             CCc--EEEEeCCCcEEEEEcCCCceeceeeeccc------ccccceeEEeeccCCceEEEeCCCCceeeec---------
Q 008510           81 NGD--IVTACSDGVTRIWTVHSDKVADSLELEAY------ASELSQYKLCRKKVGGLKLEDLPGLEALQIP---------  143 (563)
Q Consensus        81 ~g~--i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~i~~~d~~~~~~l~~~---------  143 (563)
                      +|.  ++++..++.+++|+..+++..........      ...-.........+..+.+|+..........         
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (301)
T d1l0qa2          84 DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGI  163 (301)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEE
T ss_pred             ccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEE
Confidence            998  56677788999999998875433222111      1111123344556677888888766544332         


Q ss_pred             -ccCCCeEEEEecCCCeEEEEEecccc
Q 008510          144 -GTNAGQTKVVREGDNGVAYSWDMKEQ  169 (563)
Q Consensus       144 -g~~dg~~~l~~~~~~~~~~~wd~~~~  169 (563)
                       .++++...++...+......|+....
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (301)
T d1l0qa2         164 AVTPDGTKVYVANFDSMSISVIDTVTN  190 (301)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             Eeeccccceeeecccccccccccccce
Confidence             33444444444444444445554443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.21  E-value=1.1e-10  Score=114.27  Aligned_cols=102  Identities=5%  Similarity=-0.082  Sum_probs=82.9

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEe-cCCCcEEEEEEcCCC-e-EEEEeCCCcEEEEc--CCceeEEEecC-----
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMV-GHTAIVYSIDSHASG-L-IVSGSEDRFAKIWK--DGVCVQSIEHP-----   70 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~-gH~~~V~~v~~~p~g-~-l~s~s~D~tvriWd--~~~~~~~l~h~-----   70 (563)
                      +|+++++++.|++|.+||+ ++++++++. .|...+.+++|+||| . +++++.|++|++||  +++.+..+...     
T Consensus         7 ~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~   86 (346)
T d1jmxb_           7 GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGE   86 (346)
T ss_dssp             TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTE
T ss_pred             CCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccc
Confidence            5789999999999999999 899999987 456678899999999 4 57778899999999  77777777621     


Q ss_pred             --CcEEEEEEccCCc-EEEEe------------CCCcEEEEEcCCCce
Q 008510           71 --GCVWDAKFLENGD-IVTAC------------SDGVTRIWTVHSDKV  103 (563)
Q Consensus        71 --~~V~~v~~~p~g~-i~sgs------------~Dg~Irvwd~~~~~~  103 (563)
                        ..+..++|+|||+ +++++            .++.+++||..+++.
T Consensus        87 ~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  134 (346)
T d1jmxb_          87 VGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE  134 (346)
T ss_dssp             EEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG
T ss_pred             cCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEeccccee
Confidence              2467899999998 54443            578899999887653

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.19  E-value=1.5e-10  Score=112.71  Aligned_cols=101  Identities=7%  Similarity=0.002  Sum_probs=79.1

Q ss_pred             CEEEEEECCCcEEEEcC-CCceeEEEecC--CCcEEEEEEcCCC-e-EEEEeCCCcEEEEc--CCceeEEEe-cC-----
Q 008510            4 VGIISASHDCTIRLWAL-TGQVLMEMVGH--TAIVYSIDSHASG-L-IVSGSEDRFAKIWK--DGVCVQSIE-HP-----   70 (563)
Q Consensus         4 ~~l~s~s~DgtIrlWd~-~g~~i~~l~gH--~~~V~~v~~~p~g-~-l~s~s~D~tvriWd--~~~~~~~l~-h~-----   70 (563)
                      +++++++.|++|++||+ ++++++++..+  ...+.+++|+||| . +++++.|+.|++||  +++.+..+. +.     
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            58999999999999999 89999998754  4567899999999 5 46788899999999  888887776 21     


Q ss_pred             CcEEEEEEccCCc-EEEEe------------CCCcEEEEEcCCCcee
Q 008510           71 GCVWDAKFLENGD-IVTAC------------SDGVTRIWTVHSDKVA  104 (563)
Q Consensus        71 ~~V~~v~~~p~g~-i~sgs------------~Dg~Irvwd~~~~~~~  104 (563)
                      ..++.++|+|+|+ +++++            .++.+.+||..+++..
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  128 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRR  128 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEE
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEE
Confidence            2455788888887 55444            4567888888877644

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.11  E-value=6.7e-10  Score=114.11  Aligned_cols=141  Identities=13%  Similarity=-0.043  Sum_probs=99.7

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCce--eEE---EecCCCcEEEEEEcCCC-e-EEEEeCCCcEEEEc--CCceeEEEe---
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQV--LME---MVGHTAIVYSIDSHASG-L-IVSGSEDRFAKIWK--DGVCVQSIE---   68 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~--i~~---l~gH~~~V~~v~~~p~g-~-l~s~s~D~tvriWd--~~~~~~~l~---   68 (563)
                      ||+++++++.|++|++||+ +++.  +.+   ..+|.+.+.+..|+||| . +++++.|++|++||  +++++..+.   
T Consensus        72 DG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~  151 (432)
T d1qksa2          72 SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRG  151 (432)
T ss_dssp             TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCE
T ss_pred             CCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCC
Confidence            7899999999999999998 5542  333   34677788888899999 5 58899999999999  778777654   


Q ss_pred             ---------cCCcEEEEEEccCCc--EEEEeCCCcEEEEEcCCCceeceeeec------ccccccc-ee-EEeeccCCce
Q 008510           69 ---------HPGCVWDAKFLENGD--IVTACSDGVTRIWTVHSDKVADSLELE------AYASELS-QY-KLCRKKVGGL  129 (563)
Q Consensus        69 ---------h~~~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~~~~~~------~~~~~v~-~~-~~~~~~~~~i  129 (563)
                               +......+.++|+|.  +++...++.|.+||..+.+......+.      ...-... .. .......+.+
T Consensus       152 ~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v  231 (432)
T d1qksa2         152 MTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKL  231 (432)
T ss_dssp             ECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEE
T ss_pred             ccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceE
Confidence                     234577889999987  567778899999999876533222221      1111111 22 2334455678


Q ss_pred             EEEeCCCCceeee
Q 008510          130 KLEDLPGLEALQI  142 (563)
Q Consensus       130 ~~~d~~~~~~l~~  142 (563)
                      .++|.........
T Consensus       232 ~v~d~~~~~~~~~  244 (432)
T d1qksa2         232 VVIDTKEGKLVAI  244 (432)
T ss_dssp             EEEETTTTEEEEE
T ss_pred             EEeecccceEEEE
Confidence            8889887766544

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.99  E-value=1.7e-09  Score=110.51  Aligned_cols=215  Identities=9%  Similarity=-0.007  Sum_probs=116.6

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEE--E---ecCCCcEEEEEEcCCC-e-EEEEeCCCcEEEEc--CCceeEEEe-cC
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLME--M---VGHTAIVYSIDSHASG-L-IVSGSEDRFAKIWK--DGVCVQSIE-HP   70 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~--l---~gH~~~V~~v~~~p~g-~-l~s~s~D~tvriWd--~~~~~~~l~-h~   70 (563)
                      ||+++++++.|++|++||+ ++++...  +   .+|.+.+.+++|+||| . +++++.|+++++||  ++.+++.+. |.
T Consensus        72 DGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~  151 (426)
T d1hzua2          72 SGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRG  151 (426)
T ss_dssp             TSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCE
T ss_pred             CCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccC
Confidence            6899999999999999999 6664332  2   3677888889999999 5 56677899999999  777776665 33


Q ss_pred             CcEEEEEEccCCc--EEEEeCC-----------CcEEEEEcCCCceeceeeec--------ccccccceeEEeeccCCce
Q 008510           71 GCVWDAKFLENGD--IVTACSD-----------GVTRIWTVHSDKVADSLELE--------AYASELSQYKLCRKKVGGL  129 (563)
Q Consensus        71 ~~V~~v~~~p~g~--i~sgs~D-----------g~Irvwd~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~i  129 (563)
                      ..+..+++.+++.  .+.++.|           +.+.+++...........+.        .+...-............+
T Consensus       152 ~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~  231 (426)
T d1hzua2         152 MTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKV  231 (426)
T ss_dssp             ECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEE
T ss_pred             CCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccce
Confidence            3443344444433  2333334           44444444333211111000        0000111222233445667


Q ss_pred             EEEeCCCCceeeec--c---cCCCe----------EEEEecCCCeEEEEEecccceEEEeCcEeeCCCCCCCceeecCcc
Q 008510          130 KLEDLPGLEALQIP--G---TNAGQ----------TKVVREGDNGVAYSWDMKEQKWDKLGEVVDGPDDGMNRPILDGIQ  194 (563)
Q Consensus       130 ~~~d~~~~~~l~~~--g---~~dg~----------~~l~~~~~~~~~~~wd~~~~~w~~~g~v~~~~~~~~~~~~~~g~~  194 (563)
                      .+++..........  +   +....          +.......+..+..|+.....|..        ........+.||.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~--------~~~~~~~~l~g~~  303 (426)
T d1hzua2         232 AVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ--------YAWKKVAELQGQG  303 (426)
T ss_dssp             EEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTT--------TBTSEEEEEECSS
T ss_pred             eeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecccccccc--------ccceEeEEEecCC
Confidence            77777766554332  1   11111          111111122233333322221110        0001223466665


Q ss_pred             cCcEEEEEc-CCCCeee-------eecCCCCCChhHHHH
Q 008510          195 YDYVFDVDI-GDGEPTR-------KLPYNRSDNPYDAAD  225 (563)
Q Consensus       195 ~d~v~~vd~-~dg~~~~-------~~~~n~~~~~w~~a~  225 (563)
                       +.++.+.+ |||+.++       ....+.++++|+++.
T Consensus       304 -~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t  341 (426)
T d1hzua2         304 -GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKN  341 (426)
T ss_dssp             -SCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTC
T ss_pred             -CceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCC
Confidence             56888999 9999877       344567889999864

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.84  E-value=5.9e-08  Score=93.96  Aligned_cols=98  Identities=13%  Similarity=0.173  Sum_probs=72.4

Q ss_pred             EEEEEECCCcEEEEcC-C-Cc-eeEEEecCCCcEEEEEEcCCC-eE-EEEeCCCcEEEEc--CCcee-EE---EecCCcE
Q 008510            5 GIISASHDCTIRLWAL-T-GQ-VLMEMVGHTAIVYSIDSHASG-LI-VSGSEDRFAKIWK--DGVCV-QS---IEHPGCV   73 (563)
Q Consensus         5 ~l~s~s~DgtIrlWd~-~-g~-~i~~l~gH~~~V~~v~~~p~g-~l-~s~s~D~tvriWd--~~~~~-~~---l~h~~~V   73 (563)
                      .+++++.|++|++|++ . +. .+.....|.+.+.+++|+||| .| ++++.|++|++|+  ..... ..   ..+...+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p   85 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   85 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence            4688889999999998 3 32 222334688999999999999 55 5666689999999  33222 22   2255578


Q ss_pred             EEEEEccCCc-EEEEeC-CCcEEEEEcCCCc
Q 008510           74 WDAKFLENGD-IVTACS-DGVTRIWTVHSDK  102 (563)
Q Consensus        74 ~~v~~~p~g~-i~sgs~-Dg~Irvwd~~~~~  102 (563)
                      ..++|+|||+ +++++. ++.|++|+.....
T Consensus        86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~  116 (333)
T d1ri6a_          86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGL  116 (333)
T ss_dssp             SEEEECTTSSEEEEEETTTTEEEEEEEETTE
T ss_pred             eEEEEcCCCCEEeecccCCCceeeecccccc
Confidence            8999999999 777664 6789999987765

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.70  E-value=1.1e-06  Score=84.49  Aligned_cols=205  Identities=13%  Similarity=0.060  Sum_probs=132.2

Q ss_pred             CCCEE-EEEECCCcEEEEcC-CCceeEEEecCCC-----cEEEEEEcCCC-eEEEEe------------CCCcEEEEc--
Q 008510            2 PGVGI-ISASHDCTIRLWAL-TGQVLMEMVGHTA-----IVYSIDSHASG-LIVSGS------------EDRFAKIWK--   59 (563)
Q Consensus         2 ~g~~l-~s~s~DgtIrlWd~-~g~~i~~l~gH~~-----~V~~v~~~p~g-~l~s~s------------~D~tvriWd--   59 (563)
                      ||+++ ++++.|++|++||+ +++++.++..|..     .+..++|+|++ .+++++            .+..+.+||  
T Consensus        44 Dg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~  123 (337)
T d1pbyb_          44 GGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE  123 (337)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETT
T ss_pred             CCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeecccc
Confidence            57776 56778999999999 8999998877654     34578999998 666655            467888999  


Q ss_pred             CCceeEEEecCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCceeceeeecccccc----cc------------eeE--
Q 008510           60 DGVCVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKVADSLELEAYASE----LS------------QYK--  120 (563)
Q Consensus        60 ~~~~~~~l~h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~~~~~~~~~~~~~----v~------------~~~--  120 (563)
                      +++.+..+.+...+.+++|+|+|+ +++++  +.+.+||..+++.............    ..            ...  
T Consensus       124 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (337)
T d1pbyb_         124 TLSRRKAFEAPRQITMLAWARDGSKLYGLG--RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATP  201 (337)
T ss_dssp             TTEEEEEEECCSSCCCEEECTTSSCEEEES--SSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEE
T ss_pred             CCeEEEeccccCCceEEEEcCCCCEEEEEc--CCcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeee
Confidence            778888888777899999999999 77765  4578899988865433322211110    00            000  


Q ss_pred             -----------EeeccCCceEEEeCCCCceeeec--ccCCCeEEEEecCCCe-------EEEEEecccceEEEeCcEeeC
Q 008510          121 -----------LCRKKVGGLKLEDLPGLEALQIP--GTNAGQTKVVREGDNG-------VAYSWDMKEQKWDKLGEVVDG  180 (563)
Q Consensus       121 -----------~~~~~~~~i~~~d~~~~~~l~~~--g~~dg~~~l~~~~~~~-------~~~~wd~~~~~w~~~g~v~~~  180 (563)
                                 .....++.+.+|+..........  .+......+....++.       .+..||..++.....  +   
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~--~---  276 (337)
T d1pbyb_         202 FYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKR--V---  276 (337)
T ss_dssp             EEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEESEEEEEETTTTEEEEE--E---
T ss_pred             eeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEccccEEEEECCCCcEEEE--E---
Confidence                       01122346778888766554433  2222223333333333       344566655543321  0   


Q ss_pred             CCCCCCceeecCcccCcEEEEEc-CCCCeeeeecCCCCCChhHHHH
Q 008510          181 PDDGMNRPILDGIQYDYVFDVDI-GDGEPTRKLPYNRSDNPYDAAD  225 (563)
Q Consensus       181 ~~~~~~~~~~~g~~~d~v~~vd~-~dg~~~~~~~~n~~~~~w~~a~  225 (563)
                               -.+   ..++++.+ +||+.++....++++.+|+++.
T Consensus       277 ---------~~~---~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t  310 (337)
T d1pbyb_         277 ---------PLP---HSYYSVNVSTDGSTVWLGGALGDLAAYDAET  310 (337)
T ss_dssp             ---------ECS---SCCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred             ---------cCC---CCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence                     111   23678888 8999999988888899999864

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.56  E-value=8.8e-07  Score=86.39  Aligned_cols=102  Identities=10%  Similarity=0.129  Sum_probs=75.8

Q ss_pred             CCCEEEEE-----ECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEE----------EeCCCcEEEEc--CCc
Q 008510            2 PGVGIISA-----SHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVS----------GSEDRFAKIWK--DGV   62 (563)
Q Consensus         2 ~g~~l~s~-----s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s----------~s~D~tvriWd--~~~   62 (563)
                      ||++++..     +.+.+|.+||. +|+.+.++..+...  .++|+||| .++.          ++.|+.|++||  +++
T Consensus        12 dg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~   89 (355)
T d2bbkh_          12 DARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL   89 (355)
T ss_dssp             CTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred             CCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCC
Confidence            56666554     34668999999 89999999876554  79999999 5543          34588999999  788


Q ss_pred             eeEEEe-cC-------CcEEEEEEccCCc-EEEE--eCCCcEEEEEcCCCceec
Q 008510           63 CVQSIE-HP-------GCVWDAKFLENGD-IVTA--CSDGVTRIWTVHSDKVAD  105 (563)
Q Consensus        63 ~~~~l~-h~-------~~V~~v~~~p~g~-i~sg--s~Dg~Irvwd~~~~~~~~  105 (563)
                      .+..+. +.       .....++|+|+|+ ++.+  +.+..+++|+..+++...
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~  143 (355)
T d2bbkh_          90 PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKR  143 (355)
T ss_dssp             EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEE
T ss_pred             EEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEee
Confidence            877775 22       2345689999998 5444  456789999999887543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.51  E-value=1.4e-07  Score=91.45  Aligned_cols=99  Identities=10%  Similarity=0.031  Sum_probs=80.6

Q ss_pred             EEEEECCCcEEEEcC-CCce-eEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEecCCcEEEEEEcc
Q 008510            6 IISASHDCTIRLWAL-TGQV-LMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIEHPGCVWDAKFLE   80 (563)
Q Consensus         6 l~s~s~DgtIrlWd~-~g~~-i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~h~~~V~~v~~~p   80 (563)
                      +++++.++.+.+|+. ++.. ...+.+|...+.++.+++++ .++.++ ++.|++||  +++.+..+.+...+++++|+|
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~  301 (346)
T d1jmxb_         223 PATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDHTYYCVAFDK  301 (346)
T ss_dssp             -CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECSSCCCEEEECS
T ss_pred             EeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEcCCCCEEEEEEcC
Confidence            345566778999999 5554 34566788999999999988 666655 45799999  888888888777899999999


Q ss_pred             CCc-EEEEeCCCcEEEEEcCCCceec
Q 008510           81 NGD-IVTACSDGVTRIWTVHSDKVAD  105 (563)
Q Consensus        81 ~g~-i~sgs~Dg~Irvwd~~~~~~~~  105 (563)
                      ||+ +++++.|+.|+|||.++++...
T Consensus       302 DG~~l~v~~~d~~v~v~D~~t~~~i~  327 (346)
T d1jmxb_         302 KGDKLYLGGTFNDLAVFNPDTLEKVK  327 (346)
T ss_dssp             SSSCEEEESBSSEEEEEETTTTEEEE
T ss_pred             CCCEEEEEeCCCcEEEEECccCCEEE
Confidence            999 9999999999999999988443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.49  E-value=9.8e-06  Score=79.41  Aligned_cols=137  Identities=14%  Similarity=0.055  Sum_probs=90.7

Q ss_pred             CCCEEEEE-----ECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEe----------CCCcEEEEc--CCc
Q 008510            2 PGVGIISA-----SHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGS----------EDRFAKIWK--DGV   62 (563)
Q Consensus         2 ~g~~l~s~-----s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s----------~D~tvriWd--~~~   62 (563)
                      ||++++..     +.++.|.+||. +++.+.++.+|...  .++|+||| .++.++          .|+.|++||  +++
T Consensus        31 dg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~  108 (373)
T d2madh_          31 DGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFL  108 (373)
T ss_pred             CCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCc
Confidence            46666543     34567999998 89999999877654  78999999 666654          467899999  788


Q ss_pred             eeEEEe-cCCcE-------EEEEEccCCc-EEE--EeCCCcEEEEEcCCCceeceeeec---ccccccceeEEeeccCCc
Q 008510           63 CVQSIE-HPGCV-------WDAKFLENGD-IVT--ACSDGVTRIWTVHSDKVADSLELE---AYASELSQYKLCRKKVGG  128 (563)
Q Consensus        63 ~~~~l~-h~~~V-------~~v~~~p~g~-i~s--gs~Dg~Irvwd~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~  128 (563)
                      .+..+. +....       ..+.|+++|+ ++.  ...++.+.+|+..+.+........   .+...-....+....++.
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~v~~~~dg~  188 (373)
T d2madh_         109 PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGG  188 (373)
T ss_pred             EEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEecCCCcEEEEEcCCCe
Confidence            887776 33232       4578888887 433  345678899998877643222111   111111233456677889


Q ss_pred             eEEEeCCCCcee
Q 008510          129 LKLEDLPGLEAL  140 (563)
Q Consensus       129 i~~~d~~~~~~l  140 (563)
                      +.+|+.......
T Consensus       189 ~~~~~~~~~~~~  200 (373)
T d2madh_         189 LAKTDHAGGAAG  200 (373)
T ss_pred             EEEEEcCCceee
Confidence            999998765443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.46  E-value=1e-05  Score=79.28  Aligned_cols=101  Identities=7%  Similarity=-0.079  Sum_probs=72.3

Q ss_pred             CCCEEEEEE----------CCCcEEEEcC-CCceeEEEecCCCcEE-------EEEEcCCC-e--EEEEeCCCcEEEEc-
Q 008510            2 PGVGIISAS----------HDCTIRLWAL-TGQVLMEMVGHTAIVY-------SIDSHASG-L--IVSGSEDRFAKIWK-   59 (563)
Q Consensus         2 ~g~~l~s~s----------~DgtIrlWd~-~g~~i~~l~gH~~~V~-------~v~~~p~g-~--l~s~s~D~tvriWd-   59 (563)
                      ||+++++++          .|++|++||. +++++..+..|.....       .+.|++++ .  +.....++.+.+|+ 
T Consensus        76 DG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~  155 (373)
T d2madh_          76 SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQ  155 (373)
T ss_pred             CCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeec
Confidence            577777765          4678999999 8999988887776554       35666776 3  23334456677777 


Q ss_pred             -CCceeEEEecCCcEEEEEEccCCc--EEEEeCCCcEEEEEcCCCceec
Q 008510           60 -DGVCVQSIEHPGCVWDAKFLENGD--IVTACSDGVTRIWTVHSDKVAD  105 (563)
Q Consensus        60 -~~~~~~~l~h~~~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~~~~  105 (563)
                       ..+.   ..+.....++.++|+|+  +++.+.|+.+.+|+...+....
T Consensus       156 ~~~~~---~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~  201 (373)
T d2madh_         156 GGSSD---DQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGA  201 (373)
T ss_pred             cCCeE---EEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeE
Confidence             3332   23444567889999987  6889999999999998876443

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.46  E-value=2.1e-06  Score=82.55  Aligned_cols=101  Identities=12%  Similarity=0.170  Sum_probs=69.9

Q ss_pred             CCCEEEE-EECCCcEEEEcC-CCceeEEE---ecCCCcEEEEEEcCCC-eEEEEe-CCCcEEEEc--CCceeEEE---ec
Q 008510            2 PGVGIIS-ASHDCTIRLWAL-TGQVLMEM---VGHTAIVYSIDSHASG-LIVSGS-EDRFAKIWK--DGVCVQSI---EH   69 (563)
Q Consensus         2 ~g~~l~s-~s~DgtIrlWd~-~g~~i~~l---~gH~~~V~~v~~~p~g-~l~s~s-~D~tvriWd--~~~~~~~l---~h   69 (563)
                      ||++|++ ++.|++|++|++ .+....++   ..+...+..++|+||| .+++++ .+++|++|+  ........   .+
T Consensus        47 DG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~  126 (333)
T d1ri6a_          47 DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG  126 (333)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC
T ss_pred             CCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCC
Confidence            6787754 555899999998 33322222   2344557789999999 666666 467899998  33333222   26


Q ss_pred             CCcEEEEEEccCCc-EEEEe-CCCcEEEEEcCCCc
Q 008510           70 PGCVWDAKFLENGD-IVTAC-SDGVTRIWTVHSDK  102 (563)
Q Consensus        70 ~~~V~~v~~~p~g~-i~sgs-~Dg~Irvwd~~~~~  102 (563)
                      ...+.++.++|+++ +++++ .+..|++|+.....
T Consensus       127 ~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~  161 (333)
T d1ri6a_         127 LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG  161 (333)
T ss_dssp             CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             CccceEEEeeecceeeeccccccceeeEEEeccCC
Confidence            67899999999998 55444 56779999987654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.18  E-value=7.3e-07  Score=87.00  Aligned_cols=103  Identities=14%  Similarity=0.073  Sum_probs=74.9

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCc--eeEEEecCCC----------cEEEEEEcCCC-eEEEEeCC----------CcEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQ--VLMEMVGHTA----------IVYSIDSHASG-LIVSGSED----------RFAKI   57 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~--~i~~l~gH~~----------~V~~v~~~p~g-~l~s~s~D----------~tvri   57 (563)
                      ++..++.++.++.+++|+. .++  .+....+|..          ....+++++++ .++..+.+          .+|++
T Consensus       205 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v  284 (355)
T d2bbkh_         205 KAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVV  284 (355)
T ss_dssp             TTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEE
T ss_pred             CCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEE
Confidence            4567889999999999999 443  2233333321          22347788887 43333222          46999


Q ss_pred             Ec--CCceeEEEecCCcEEEEEEccCCc---EEEEeCCCcEEEEEcCCCcee
Q 008510           58 WK--DGVCVQSIEHPGCVWDAKFLENGD---IVTACSDGVTRIWTVHSDKVA  104 (563)
Q Consensus        58 Wd--~~~~~~~l~h~~~V~~v~~~p~g~---i~sgs~Dg~Irvwd~~~~~~~  104 (563)
                      ||  +++.+..+.+...+++++|+|||+   +++++.|+.|+|||..+++..
T Consensus       285 ~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~  336 (355)
T d2bbkh_         285 LDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL  336 (355)
T ss_dssp             EETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred             EeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEE
Confidence            99  788888888777899999999997   366778999999999999844

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.08  E-value=4e-06  Score=85.75  Aligned_cols=99  Identities=8%  Similarity=0.021  Sum_probs=75.5

Q ss_pred             CCEEEEEECCCcEEEEcC-CCceeEEEec-----CCCcEEEEEEcCCC-eEEEEeC---------CCcEEEEc-CCceeE
Q 008510            3 GVGIISASHDCTIRLWAL-TGQVLMEMVG-----HTAIVYSIDSHASG-LIVSGSE---------DRFAKIWK-DGVCVQ   65 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~-~g~~i~~l~g-----H~~~V~~v~~~p~g-~l~s~s~---------D~tvriWd-~~~~~~   65 (563)
                      +..++. .+|+.+.+||+ +|+....+.+     |...|.++.|+||| .++.++.         ++.+.||| .+..+.
T Consensus        27 d~~~~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~  105 (470)
T d2bgra1          27 DHEYLY-KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI  105 (470)
T ss_dssp             SSEEEE-ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC
T ss_pred             CCEEEE-EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCccc
Confidence            333443 46889999999 7776655544     45789999999999 7776643         46788999 545455


Q ss_pred             EEe-cCCcEEEEEEccCCc-EEEEeCCCcEEEEEcCCCce
Q 008510           66 SIE-HPGCVWDAKFLENGD-IVTACSDGVTRIWTVHSDKV  103 (563)
Q Consensus        66 ~l~-h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~~  103 (563)
                      .+. ++..+..+.|+|||+ ||. ..|+.+++|+..++..
T Consensus       106 ~l~~~~~~~~~~~~SPDG~~ia~-~~~~~l~~~~~~~g~~  144 (470)
T d2bgra1         106 TEERIPNNTQWVTWSPVGHKLAY-VWNNDIYVKIEPNLPS  144 (470)
T ss_dssp             CSSCCCTTEEEEEECSSTTCEEE-EETTEEEEESSTTSCC
T ss_pred             ccccCCccccccccccCcceeeE-eecccceEEECCCCce
Confidence            565 888999999999999 666 5688999999998863

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.97  E-value=2.3e-05  Score=77.07  Aligned_cols=98  Identities=12%  Similarity=-0.011  Sum_probs=67.7

Q ss_pred             CCCEEEEEE----------CCCcEEEEcC-CCceeEEEecCCCc-------EEEEEEcCCC-eEEEEe-CCCcEEEEc--
Q 008510            2 PGVGIISAS----------HDCTIRLWAL-TGQVLMEMVGHTAI-------VYSIDSHASG-LIVSGS-EDRFAKIWK--   59 (563)
Q Consensus         2 ~g~~l~s~s----------~DgtIrlWd~-~g~~i~~l~gH~~~-------V~~v~~~p~g-~l~s~s-~D~tvriWd--   59 (563)
                      ||+.++..+          .|++|++||. +++++..+..|...       ...++|+||| .++.+. .++++.+||  
T Consensus        75 Dg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~  154 (368)
T d1mdah_          75 SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVP  154 (368)
T ss_dssp             TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEET
T ss_pred             CCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECC
Confidence            466666654          4788999999 89998888765432       2468999999 665554 679999999  


Q ss_pred             CCceeEEEecCCcEEEEEEccCCc--EEEEeCCCcEEEEEcCCCc
Q 008510           60 DGVCVQSIEHPGCVWDAKFLENGD--IVTACSDGVTRIWTVHSDK  102 (563)
Q Consensus        60 ~~~~~~~l~h~~~V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~~~  102 (563)
                      +++.+..+..+...   .+.|.+.  ++..+.||.+.+|+.....
T Consensus       155 ~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~Dg~~~~~~~~~~~  196 (368)
T d1mdah_         155 GASDDQLTKSASCF---HIHPGAAATHYLGSCPASLAASDLAAAP  196 (368)
T ss_dssp             TTEEEEEEECSSCC---CCEEEETTEEECCCCTTSCEEEECCSSC
T ss_pred             CCcEeEEeeccCcc---eEccCCCceEEEEcCCCCEEEEEecCCc
Confidence            77888877733321   1122222  6777888888888876543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.73  E-value=0.00011  Score=71.87  Aligned_cols=125  Identities=11%  Similarity=0.007  Sum_probs=83.6

Q ss_pred             EECCCcEE--EEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEE----------eCCCcEEEEc--CCceeEEEe-cC-
Q 008510            9 ASHDCTIR--LWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSG----------SEDRFAKIWK--DGVCVQSIE-HP-   70 (563)
Q Consensus         9 ~s~DgtIr--lWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~----------s~D~tvriWd--~~~~~~~l~-h~-   70 (563)
                      .+.+++.+  +||. +++.+.++.+|...  .++|+||| .++..          +.|++|++||  ++++++.+. +. 
T Consensus        40 ~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~  117 (368)
T d1mdah_          40 AYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDA  117 (368)
T ss_dssp             TTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTS
T ss_pred             ccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCcc
Confidence            45566655  5577 78999988887765  58899999 55543          3478899999  888888876 21 


Q ss_pred             ------CcEEEEEEccCCc-EEEEe-CCCcEEEEEcCCCceeceeeeccccc---ccceeEEeeccCCceEEEeCC
Q 008510           71 ------GCVWDAKFLENGD-IVTAC-SDGVTRIWTVHSDKVADSLELEAYAS---ELSQYKLCRKKVGGLKLEDLP  135 (563)
Q Consensus        71 ------~~V~~v~~~p~g~-i~sgs-~Dg~Irvwd~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~i~~~d~~  135 (563)
                            ...+.++|+|||+ ++++. .++.+.+||+.+++............   .-....+....++.+..+++.
T Consensus       118 ~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~  193 (368)
T d1mdah_         118 PRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLA  193 (368)
T ss_dssp             CSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECC
T ss_pred             ceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEec
Confidence                  1345799999999 66554 67999999999988654433322110   011223344556677776654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.61  E-value=0.00031  Score=66.11  Aligned_cols=100  Identities=18%  Similarity=0.320  Sum_probs=79.6

Q ss_pred             CCCEEEEEECCCcEEEEcCCCceeEEEe--cCCCcEEEEEEcCCC-eEEEEe-CCCcEEEEc-CCceeEEEe---cCCcE
Q 008510            2 PGVGIISASHDCTIRLWALTGQVLMEMV--GHTAIVYSIDSHASG-LIVSGS-EDRFAKIWK-DGVCVQSIE---HPGCV   73 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~--gH~~~V~~v~~~p~g-~l~s~s-~D~tvriWd-~~~~~~~l~---h~~~V   73 (563)
                      +|+.+++....+.|++||.+|+.+.++.  ++.....+|++.++| .+++-+ .++.|.+++ +++.+.++.   .....
T Consensus       167 ~g~i~v~d~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~~~~~~~~~~~~~~p  246 (279)
T d1q7fa_         167 KQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQC  246 (279)
T ss_dssp             SSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCE
T ss_pred             ceeEEeeeccccceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCCCEEEEEeCCCCCCCE
Confidence            3567777777889999999999888873  455678899999999 555543 455799999 999888886   23368


Q ss_pred             EEEEEccCCcEEEEeCCCcEEEEEcCCC
Q 008510           74 WDAKFLENGDIVTACSDGVTRIWTVHSD  101 (563)
Q Consensus        74 ~~v~~~p~g~i~sgs~Dg~Irvwd~~~~  101 (563)
                      +.|++.|+|.++..+.++.|++|.....
T Consensus       247 ~~vav~~dG~l~V~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         247 FDVALMDDGSVVLASKDYRLYIYRYVQL  274 (279)
T ss_dssp             EEEEEETTTEEEEEETTTEEEEEECSCC
T ss_pred             eEEEEeCCCcEEEEeCCCeEEEEEeeee
Confidence            9999999999777778999999987654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=97.54  E-value=0.00058  Score=68.27  Aligned_cols=78  Identities=10%  Similarity=0.113  Sum_probs=61.4

Q ss_pred             EEEEECCCcEEEEcC-CCceeEEEec------------------------------CCCcEEEEEEcCCC-e-EEEEeCC
Q 008510            6 IISASHDCTIRLWAL-TGQVLMEMVG------------------------------HTAIVYSIDSHASG-L-IVSGSED   52 (563)
Q Consensus         6 l~s~s~DgtIrlWd~-~g~~i~~l~g------------------------------H~~~V~~v~~~p~g-~-l~s~s~D   52 (563)
                      |+|++.+|+|++|++ +++.++++.-                              |..........||| + +++...+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            889999999999999 8888777521                              33445556667899 4 5666778


Q ss_pred             CcEEEEc--CCceeEEEe--cCCcEEEEEEccCCc
Q 008510           53 RFAKIWK--DGVCVQSIE--HPGCVWDAKFLENGD   83 (563)
Q Consensus        53 ~tvriWd--~~~~~~~l~--h~~~V~~v~~~p~g~   83 (563)
                      .+|.+||  +.++.+.+.  +....+.++|+|+|+
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~  128 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPK  128 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSB
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCC
Confidence            8999999  778888776  455899999999998

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.35  E-value=0.00019  Score=72.71  Aligned_cols=96  Identities=8%  Similarity=-0.053  Sum_probs=69.7

Q ss_pred             CCCEEEEEEC---------CCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeEEEe-
Q 008510            2 PGVGIISASH---------DCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQSIE-   68 (563)
Q Consensus         2 ~g~~l~s~s~---------DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~~l~-   68 (563)
                      ||++|+.+++         ++.+.+||+.+..+..+..|...+..+.|+||| .++.. .|+.+.+|+  +++..+... 
T Consensus        72 Dg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~  150 (470)
T d2bgra1          72 DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWT  150 (470)
T ss_dssp             TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSC
T ss_pred             CCCEEEEEECCcceeeeccCceEEEEECCCCcccccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeec
Confidence            6888888764         567889999555567788999999999999999 77764 577899999  555444322 


Q ss_pred             -c-----------------CCcEEEEEEccCCc-EEEEeCCCc-EEEEEc
Q 008510           69 -H-----------------PGCVWDAKFLENGD-IVTACSDGV-TRIWTV   98 (563)
Q Consensus        69 -h-----------------~~~V~~v~~~p~g~-i~sgs~Dg~-Irvwd~   98 (563)
                       .                 .+....+.|+|||+ |+....|.+ ++.|++
T Consensus       151 ~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         151 GKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             CBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred             cCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEE
Confidence             1                 12245577999999 887766544 555554

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.24  E-value=0.018  Score=53.95  Aligned_cols=100  Identities=12%  Similarity=0.089  Sum_probs=75.9

Q ss_pred             CCCEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc----CCceeEEEe--cCCcEE
Q 008510            2 PGVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK----DGVCVQSIE--HPGCVW   74 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd----~~~~~~~l~--h~~~V~   74 (563)
                      ||+++++...+++|..|+.+|+. ..+..+...+.+++|.++| .+++...++.+..|+    .+.......  ......
T Consensus        38 dG~l~vt~~~~~~I~~i~p~g~~-~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n  116 (302)
T d2p4oa1          38 DGTIFVTNHEVGEIVSITPDGNQ-QIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLN  116 (302)
T ss_dssp             TSCEEEEETTTTEEEEECTTCCE-EEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEE
T ss_pred             CCCEEEEeCCCCEEEEEeCCCCE-EEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccc
Confidence            68889999999999999987764 3455677889999999999 777777788888777    223222222  334788


Q ss_pred             EEEEccCCc-EEEEeCCCcEEEEEcCCCc
Q 008510           75 DAKFLENGD-IVTACSDGVTRIWTVHSDK  102 (563)
Q Consensus        75 ~v~~~p~g~-i~sgs~Dg~Irvwd~~~~~  102 (563)
                      .+++.++|+ +++.+.++.+..+|...+.
T Consensus       117 ~i~~~~~g~~~v~~~~~~~i~~~~~~~~~  145 (302)
T d2p4oa1         117 GITPLSDTQYLTADSYRGAIWLIDVVQPS  145 (302)
T ss_dssp             EEEESSSSEEEEEETTTTEEEEEETTTTE
T ss_pred             eeEEccCCCEEeeccccccceeeeccCCc
Confidence            999999999 5666778888888887764

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=97.21  E-value=0.0022  Score=63.97  Aligned_cols=89  Identities=8%  Similarity=0.000  Sum_probs=62.0

Q ss_pred             CCCEE-EEEECCCcEEEEcC-CCceeEEEe-cCCCcEEEEEEcCCC---eEEEEeCCCc-----------------EEEE
Q 008510            2 PGVGI-ISASHDCTIRLWAL-TGQVLMEMV-GHTAIVYSIDSHASG---LIVSGSEDRF-----------------AKIW   58 (563)
Q Consensus         2 ~g~~l-~s~s~DgtIrlWd~-~g~~i~~l~-gH~~~V~~v~~~p~g---~l~s~s~D~t-----------------vriW   58 (563)
                      ||+++ ++...+.+|.+||+ ++++.+.+. .+...++.++|+|+|   +++..+++..                 +..+
T Consensus        82 DGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~i  161 (441)
T d1qnia2          82 DGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAI  161 (441)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEee
Confidence            46666 44557889999999 888877765 467789999999998   3444444431                 2345


Q ss_pred             c--CCceeEEEecCCcEEEEEEccCCc-EEEEeCC
Q 008510           59 K--DGVCVQSIEHPGCVWDAKFLENGD-IVTACSD   90 (563)
Q Consensus        59 d--~~~~~~~l~h~~~V~~v~~~p~g~-i~sgs~D   90 (563)
                      |  +.+....+........++++|+|+ +.+.+.+
T Consensus       162 D~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~n  196 (441)
T d1qnia2         162 DAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYN  196 (441)
T ss_dssp             ETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESC
T ss_pred             cCccceeeEEEecCCCccceEECCCCCEEEEEecC
Confidence            6  555556666556788899999999 5555544

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.92  E-value=0.024  Score=52.39  Aligned_cols=97  Identities=15%  Similarity=0.242  Sum_probs=73.1

Q ss_pred             CCEEEEEECCCcEEEEcCCCceeEEEe--cCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEecC---CcEEE
Q 008510            3 GVGIISASHDCTIRLWALTGQVLMEMV--GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIEHP---GCVWD   75 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~~g~~i~~l~--gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~h~---~~V~~   75 (563)
                      |+.+++....+.+.+++.+|+.+.++.  .|......+++.++| .+++....+.|++|+ +++.+.++..+   .....
T Consensus       125 G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~~~~g~~g~~~~P~g  204 (279)
T d1q7fa_         125 GRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIG  204 (279)
T ss_dssp             SCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEE
T ss_pred             CcEEEEeeccceeeEeccCCceeecccccccccccceeeeccceeEEeeeccccceeeeecCCceeeeecccccccCCcc
Confidence            556666566666777777888877763  455678899999998 777778888999999 99988888632   35889


Q ss_pred             EEEccCCcE-EEEeC-CCcEEEEEcC
Q 008510           76 AKFLENGDI-VTACS-DGVTRIWTVH   99 (563)
Q Consensus        76 v~~~p~g~i-~sgs~-Dg~Irvwd~~   99 (563)
                      |++.++|+| ++-+. ++.|.+|+..
T Consensus       205 iavD~~G~i~Vad~~~~~~v~~f~~~  230 (279)
T d1q7fa_         205 VGINSNGEILIADNHNNFNLTIFTQD  230 (279)
T ss_dssp             EEECTTCCEEEEECSSSCEEEEECTT
T ss_pred             cccccCCeEEEEECCCCcEEEEECCC
Confidence            999999994 44333 4579999854

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=96.73  E-value=0.023  Score=53.18  Aligned_cols=78  Identities=17%  Similarity=0.195  Sum_probs=60.6

Q ss_pred             ceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEecCCcEEEEEEccCCc-EEEEeCCCcEEEEEcC
Q 008510           23 QVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIEHPGCVWDAKFLENGD-IVTACSDGVTRIWTVH   99 (563)
Q Consensus        23 ~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~h~~~V~~v~~~p~g~-i~sgs~Dg~Irvwd~~   99 (563)
                      +.+.++... .++..+++.||| .+++...+++|+.|+ +++..........+++++|.|+|+ +++...++.+..|+..
T Consensus        19 ~v~~~~p~~-~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~   97 (302)
T d2p4oa1          19 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLV   97 (302)
T ss_dssp             EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred             cEEEECCCC-CCcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEec
Confidence            444555432 368899999999 888888899999999 776554445778999999999999 6777778888888865


Q ss_pred             CC
Q 008510          100 SD  101 (563)
Q Consensus       100 ~~  101 (563)
                      ..
T Consensus        98 ~~   99 (302)
T d2p4oa1          98 KS   99 (302)
T ss_dssp             CT
T ss_pred             cc
Confidence            43

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.63  E-value=0.21  Score=44.74  Aligned_cols=75  Identities=13%  Similarity=0.101  Sum_probs=51.8

Q ss_pred             cEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEE-EeCCCcEEEE--c-CCceeEEEe-cCCcEEEEEEccCCc-EEE
Q 008510           14 TIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVS-GSEDRFAKIW--K-DGVCVQSIE-HPGCVWDAKFLENGD-IVT   86 (563)
Q Consensus        14 tIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s-~s~D~tvriW--d-~~~~~~~l~-h~~~V~~v~~~p~g~-i~s   86 (563)
                      .|.|-|.+|.-.+.+..+...+.+-+|+||| .||- ...++...+|  + .+.....+. +.+......|+|+|+ ++.
T Consensus        20 ~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~   99 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAF   99 (269)
T ss_dssp             EEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             EEEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeE
Confidence            4667778887777777778889999999999 6554 4444443444  4 444444444 777899999999999 554


Q ss_pred             Ee
Q 008510           87 AC   88 (563)
Q Consensus        87 gs   88 (563)
                      ..
T Consensus       100 ~~  101 (269)
T d2hqsa1         100 AL  101 (269)
T ss_dssp             EE
T ss_pred             ee
Confidence            43

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.45  E-value=0.29  Score=44.10  Aligned_cols=100  Identities=10%  Similarity=0.040  Sum_probs=64.1

Q ss_pred             CCCEEEEEECCCcEEEEcC-CCceeEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe--cCCcEEEE
Q 008510            2 PGVGIISASHDCTIRLWAL-TGQVLMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE--HPGCVWDA   76 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~-~g~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~--h~~~V~~v   76 (563)
                      +|+.+++....+.+++++. ++..+.... .....+++++.++| .+++-.....+..++ .+.....+.  .-.....+
T Consensus        67 ~g~i~v~d~~~~~i~~~~~~~~~~~~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i  145 (260)
T d1rwia_          67 AGTVYVTDFNNRVVTLAAGSNNQTVLPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGV  145 (260)
T ss_dssp             TCCEEEEETTTEEEEECTTCSCCEECCCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEE
T ss_pred             CCCEEEeeeeeceeeeeeeccceeeeeee-eeeecccccccccceeEeeccccccccccccccceeeeeeecccCCccee
Confidence            4566666666666666655 343333322 23557899999998 555555555677777 444443333  22356789


Q ss_pred             EEccCCc-EEEEeCCCcEEEEEcCCCc
Q 008510           77 KFLENGD-IVTACSDGVTRIWTVHSDK  102 (563)
Q Consensus        77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~~  102 (563)
                      ++.|+|+ +++...++.|..||.+...
T Consensus       146 ~~~~~g~~~v~~~~~~~i~~~d~~~~~  172 (260)
T d1rwia_         146 AVDNSGNVYVTDTDNNRVVKLEAESNN  172 (260)
T ss_dssp             EECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred             eecCCCCEeeeccccccccccccccce
Confidence            9999999 5666778889999987654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.33  E-value=0.069  Score=48.52  Aligned_cols=100  Identities=6%  Similarity=-0.000  Sum_probs=70.8

Q ss_pred             CCCEEEEEECCCcEEEEcCCCceeEEEe-cCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEe--cCCcEEEE
Q 008510            2 PGVGIISASHDCTIRLWALTGQVLMEMV-GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIE--HPGCVWDA   76 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~-gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~--h~~~V~~v   76 (563)
                      +|+.+++...++.|..++.++.....+. ..-.....+++.++| .+++....+.|..++ .+.....+.  .-.....|
T Consensus       150 ~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i  229 (260)
T d1rwia_         150 SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAV  229 (260)
T ss_dssp             TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEE
T ss_pred             CCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEE
Confidence            4677777788888999998665544443 455667899999999 777777778888888 555444444  22467899


Q ss_pred             EEccCCc-EEEEeCCCcEEEEEcCCC
Q 008510           77 KFLENGD-IVTACSDGVTRIWTVHSD  101 (563)
Q Consensus        77 ~~~p~g~-i~sgs~Dg~Irvwd~~~~  101 (563)
                      ++.++|. +++-..++.|+.++....
T Consensus       230 ~~d~~g~l~vad~~~~rI~~i~~~~~  255 (260)
T d1rwia_         230 AVDSDRTVYVADRGNDRVVKLTSLEH  255 (260)
T ss_dssp             EECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred             EEeCCCCEEEEECCCCEEEEEeCCCC
Confidence            9999998 455556677777766543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.16  E-value=0.073  Score=48.00  Aligned_cols=97  Identities=12%  Similarity=0.121  Sum_probs=62.4

Q ss_pred             EEEEECCCcEEEEc--CCCceeEEEecCCCcEEEEEEcCCC-e-EEEEeCCCcEEEEc---CCceeEEEecCCcEEEEEE
Q 008510            6 IISASHDCTIRLWA--LTGQVLMEMVGHTAIVYSIDSHASG-L-IVSGSEDRFAKIWK---DGVCVQSIEHPGCVWDAKF   78 (563)
Q Consensus         6 l~s~s~DgtIrlWd--~~g~~i~~l~gH~~~V~~v~~~p~g-~-l~s~s~D~tvriWd---~~~~~~~l~h~~~V~~v~~   78 (563)
                      +++...+|...+|.  ..+.....+..+........++|++ . +.+....+...+|.   .+...+.+.+........|
T Consensus       142 ~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~  221 (269)
T d2hqsa1         142 AFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSL  221 (269)
T ss_dssp             EEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEE
T ss_pred             eecccccCCceEeeeecccccceeeecccccccccccccccceeEEEeecCCceeeeEeecccccceEeecCccccceEE
Confidence            44444555545544  4555555666677778888999999 4 44455556666666   4444455556667888999


Q ss_pred             ccCCc-EEEEeC---CCcEEEEEcCCCc
Q 008510           79 LENGD-IVTACS---DGVTRIWTVHSDK  102 (563)
Q Consensus        79 ~p~g~-i~sgs~---Dg~Irvwd~~~~~  102 (563)
                      +|||+ |+-.+.   ...+++++++.+.
T Consensus       222 SPDG~~i~f~s~~~~~~~l~~~~~dg~~  249 (269)
T d2hqsa1         222 APNGTMVIYSSSQGMGSVLNLVSTDGRF  249 (269)
T ss_dssp             CTTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred             CCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence            99999 654433   3456777777654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=94.62  E-value=1.2  Score=41.99  Aligned_cols=70  Identities=6%  Similarity=0.000  Sum_probs=49.7

Q ss_pred             CcEEEEEEcCCC-eEEEEe-CCCcEEEEc---CCcee--EEEe---cCCcEEEEEEccCCc-E-EEEeCCCcEEEEEcCC
Q 008510           33 AIVYSIDSHASG-LIVSGS-EDRFAKIWK---DGVCV--QSIE---HPGCVWDAKFLENGD-I-VTACSDGVTRIWTVHS  100 (563)
Q Consensus        33 ~~V~~v~~~p~g-~l~s~s-~D~tvriWd---~~~~~--~~l~---h~~~V~~v~~~p~g~-i-~sgs~Dg~Irvwd~~~  100 (563)
                      ..++++.|+|+| +++.+. ....|++|+   .+...  ..+.   .......++|+|+|+ + ++.-.+++|.+|+...
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~  224 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP  224 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecC
Confidence            457899999999 555554 345788887   33332  2222   334899999999999 4 5666789999999987


Q ss_pred             Cc
Q 008510          101 DK  102 (563)
Q Consensus       101 ~~  102 (563)
                      +.
T Consensus       225 ~~  226 (365)
T d1jofa_         225 AT  226 (365)
T ss_dssp             TT
T ss_pred             CC
Confidence            65

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.44  E-value=0.22  Score=45.03  Aligned_cols=180  Identities=9%  Similarity=0.035  Sum_probs=99.8

Q ss_pred             CCccchhcHHHHhhcCCCchh-hhhhcccchhhHHHHHHHhhcCCCCCcchHHHHHHHHHhhcCCCccHHHHHhhHHHHH
Q 008510          372 AMIFPVIDILRMTILHPDGAS-LLLKHVENQNDVLMEMIEKVSSNPTLPANLLTGIRAVTNLFKNSSWYSWLQKNRSEIL  450 (563)
Q Consensus       372 ~~~fP~lDL~Rl~~l~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~lR~l~N~f~~~~~~~~~~~~~~~il  450 (563)
                      +.+.-+..++.-++.+..... .+.  .   .+.+..++..+... ..+..+.-+++++.|+..+......... ....+
T Consensus        74 ~vr~~A~~~L~~l~~~~~~~~~~~~--~---~~~i~~Lv~lL~~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~~-~~~gi  146 (264)
T d1xqra1          74 GLRWRAAQLIGTCSQNVAAIQEQVL--G---LGALRKLLRLLDRD-ACDTVRVKALFAISCLVREQEAGLLQFL-RLDGF  146 (264)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHH--H---TTHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHTTCHHHHHHHH-HTTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--H---cCchHHHHHHhhcC-CCHHHHHHHHHHHHHHhccchhhHHHHH-Hhhhh
Confidence            345557777776666433222 221  1   12344444433322 2344567889999999988776554332 12234


Q ss_pred             HHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHHhhhhcccChhHHHHHHHHHhhhhc-hhHHHHHh
Q 008510          451 DAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLML-EGLVKKIA  529 (563)
Q Consensus       451 ~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~Ea~~R~l~AlG~l~~-~~~~~~~~  529 (563)
                      ..+...+.+.+..++..++.++.|++.........-.....+..+++++.  ..+++..-..+.||++|.. .++....+
T Consensus       147 ~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~--~~~~~~~~~a~~aL~~L~~~~~~~~~~~  224 (264)
T d1xqra1         147 SVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVR--TEHSPFHEHVLGALCSLVTDFPQGVREC  224 (264)
T ss_dssp             HHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHT--SCCSTHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHc--CCCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            44455556678889999999999987642221111111234666677774  4578899999999999987 33333322


Q ss_pred             h--hcChHHHHHHHhh--cCChhHHHHHHHHHHHh
Q 008510          530 L--DFDVGNIARVAKA--SKETKIAEVGADIELLA  560 (563)
Q Consensus       530 ~--~~~~~~~~~~~~~--~~~~~i~~~~~ei~~ll  560 (563)
                      .  .++....+.....  +.+....+..+-+..|+
T Consensus       225 ~~~~l~~~~~L~~~~~~~~~~~~~~e~~~~~~~ll  259 (264)
T d1xqra1         225 REPELGLEELLRHRCQLLQQHEEYQEELEFCEKLL  259 (264)
T ss_dssp             HCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            2  2455555543332  33333444444443333

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.27  E-value=0.15  Score=46.34  Aligned_cols=120  Identities=11%  Similarity=0.023  Sum_probs=72.1

Q ss_pred             hHHHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHHhhh
Q 008510          421 NLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAE  500 (563)
Q Consensus       421 ~~ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~~~l~  500 (563)
                      .+.-++..|.|+..+...+..+.. ..-+...+..++.+.+..+|..++.++.|++-..-.....-.....+..++..+.
T Consensus        33 ~~~~Al~~L~~L~~~~d~a~~l~~-~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~  111 (264)
T d1xqra1          33 EREGALELLADLCENMDNAADFCQ-LSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD  111 (264)
T ss_dssp             HHHHHHHHHHHHHTSHHHHHHHHH-TTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHH-cCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhh
Confidence            356678888888776665554432 2222233444566789999999999999998532211111112234566677775


Q ss_pred             hcccChhHHHHHHHHHhhhhc-hhHHH-HHhhhcChHHHHHHHh
Q 008510          501 EESIEVDSKYRALVAIGTLML-EGLVK-KIALDFDVGNIARVAK  542 (563)
Q Consensus       501 ~~~~~~Ea~~R~l~AlG~l~~-~~~~~-~~~~~~~~~~~~~~~~  542 (563)
                      . ..+++...+.+.||++++. .+... .+...-+++.+++.++
T Consensus       112 ~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~  154 (264)
T d1xqra1         112 R-DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ  154 (264)
T ss_dssp             H-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             c-CCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHh
Confidence            3 4678899999999999998 33222 2333333444444444

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=94.25  E-value=0.95  Score=42.59  Aligned_cols=103  Identities=15%  Similarity=0.173  Sum_probs=65.4

Q ss_pred             CCCEEEEEECCC-----------cEEEEcC-CCce--eEE-EecCCCcEEEEEEcCCC-eEEEEeCC-CcEEEEc-CCce
Q 008510            2 PGVGIISASHDC-----------TIRLWAL-TGQV--LME-MVGHTAIVYSIDSHASG-LIVSGSED-RFAKIWK-DGVC   63 (563)
Q Consensus         2 ~g~~l~s~s~Dg-----------tIrlWd~-~g~~--i~~-l~gH~~~V~~v~~~p~g-~l~s~s~D-~tvriWd-~~~~   63 (563)
                      +|+.++-|+.+.           .+.+||. +++-  ... -..|..+....++.++| .++.|+.+ .++.+|| ....
T Consensus        30 ~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~  109 (387)
T d1k3ia3          30 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS  109 (387)
T ss_dssp             TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTE
T ss_pred             CCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCc
Confidence            577788888531           3678998 4432  222 23454555567788999 67777666 5799999 3222


Q ss_pred             eEEEe---cCCcEEEEEEccCCc-EEEEeCC------CcEEEEEcCCCcee
Q 008510           64 VQSIE---HPGCVWDAKFLENGD-IVTACSD------GVTRIWTVHSDKVA  104 (563)
Q Consensus        64 ~~~l~---h~~~V~~v~~~p~g~-i~sgs~D------g~Irvwd~~~~~~~  104 (563)
                      -....   .+..-.+++..+||+ ++.|+.+      ..+.+||..+.+..
T Consensus       110 w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~  160 (387)
T d1k3ia3         110 WIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT  160 (387)
T ss_dssp             EEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred             ccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCcee
Confidence            22232   333456778888999 5666543      36899999887643

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=93.51  E-value=2.8  Score=38.48  Aligned_cols=100  Identities=9%  Similarity=-0.020  Sum_probs=60.2

Q ss_pred             CCCEEEEEECCCcEEEEcCCCceeEEEecCC-----CcEEEEEEcCCC-eEEEEeC---------------CCcEEEEc-
Q 008510            2 PGVGIISASHDCTIRLWALTGQVLMEMVGHT-----AIVYSIDSHASG-LIVSGSE---------------DRFAKIWK-   59 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~-----~~V~~v~~~p~g-~l~s~s~---------------D~tvriWd-   59 (563)
                      +|+.++.+.....|...+.++.....+....     ....++++.++| ..+|-..               ++.|..++ 
T Consensus        81 dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~  160 (314)
T d1pjxa_          81 DANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT  160 (314)
T ss_dssp             SSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT
T ss_pred             CCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee
Confidence            3667777777777888888665443332211     135779999999 5555321               23344444 


Q ss_pred             CCceeEEEecCCcEEEEEEccCCc-----E-EEEeCCCcEEEEEcCCC
Q 008510           60 DGVCVQSIEHPGCVWDAKFLENGD-----I-VTACSDGVTRIWTVHSD  101 (563)
Q Consensus        60 ~~~~~~~l~h~~~V~~v~~~p~g~-----i-~sgs~Dg~Irvwd~~~~  101 (563)
                      +++.......-..-..++|+|+++     + ++-+..+.|+.||+...
T Consensus       161 dg~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~  208 (314)
T d1pjxa_         161 DGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGP  208 (314)
T ss_dssp             TSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEET
T ss_pred             cCceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCc
Confidence            565554444333456788888653     4 45566788888887644

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=92.60  E-value=0.48  Score=42.23  Aligned_cols=84  Identities=14%  Similarity=0.116  Sum_probs=54.0

Q ss_pred             CCEEEEEECCCcEEEEcCCCceeEEEecCCCcEEEEEEcCCC-eEEE-EeCCC---c--EEEEc-CCceeEEEe-cC---
Q 008510            3 GVGIISASHDCTIRLWALTGQVLMEMVGHTAIVYSIDSHASG-LIVS-GSEDR---F--AKIWK-DGVCVQSIE-HP---   70 (563)
Q Consensus         3 g~~l~s~s~DgtIrlWd~~g~~i~~l~gH~~~V~~v~~~p~g-~l~s-~s~D~---t--vriWd-~~~~~~~l~-h~---   70 (563)
                      |++++-.+ ++.|.+.|+.+...+.+..+.+.+...+|+||| .|+- ...++   .  +.+++ .+.....+. ++   
T Consensus        12 G~~v~f~~-~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~   90 (281)
T d1k32a2          12 GDRIIFVC-CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKS   90 (281)
T ss_dssp             TTEEEEEE-TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEE
T ss_pred             CCEEEEEe-CCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCc
Confidence            77777665 456777788555556777788889999999999 5553 32232   2  44445 444444443 21   


Q ss_pred             ----CcEEEEEEccCCc-EEEE
Q 008510           71 ----GCVWDAKFLENGD-IVTA   87 (563)
Q Consensus        71 ----~~V~~v~~~p~g~-i~sg   87 (563)
                          ...+..+|+|+|+ ++..
T Consensus        91 ~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          91 TGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             ETTEECSEEEEECTTCCEEEEE
T ss_pred             cCccccccccccCCCCCEEEEE
Confidence                2467889999998 5543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=92.52  E-value=0.43  Score=45.41  Aligned_cols=101  Identities=11%  Similarity=0.086  Sum_probs=59.9

Q ss_pred             CCCEE-EEEECCCcEEEEcC-CCc--eeEEEe-----------------cCCCcEEEEEEcCCC-eEEEEe-CCC-----
Q 008510            2 PGVGI-ISASHDCTIRLWAL-TGQ--VLMEMV-----------------GHTAIVYSIDSHASG-LIVSGS-EDR-----   53 (563)
Q Consensus         2 ~g~~l-~s~s~DgtIrlWd~-~g~--~i~~l~-----------------gH~~~V~~v~~~p~g-~l~s~s-~D~-----   53 (563)
                      +|+++ +++-.+++|.+|+. .+.  .+....                 .+......+.++|+| .++++. .+.     
T Consensus       203 dg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~  282 (365)
T d1jofa_         203 TGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQG  282 (365)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCC
T ss_pred             CCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccce
Confidence            35544 55667899999998 322  222211                 122235678999999 554442 222     


Q ss_pred             cEEEEc---CCceeEEE--e----cCCcEEEEEEcc-CCc-E-EEEeCCCcEEEEEcCCCc
Q 008510           54 FAKIWK---DGVCVQSI--E----HPGCVWDAKFLE-NGD-I-VTACSDGVTRIWTVHSDK  102 (563)
Q Consensus        54 tvriWd---~~~~~~~l--~----h~~~V~~v~~~p-~g~-i-~sgs~Dg~Irvwd~~~~~  102 (563)
                      .|..|+   .+...+..  .    ....-++++++| +|+ + ++...++.|.+|+++...
T Consensus       283 ~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         283 YIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             EEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             EEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence            366676   33322211  1    223678899998 788 5 455677999999886653

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=92.16  E-value=0.97  Score=41.79  Aligned_cols=95  Identities=15%  Similarity=0.194  Sum_probs=64.4

Q ss_pred             EEEEEECCCcEEEEcC--CCcee-----EEEec-CCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-C-CceeEEEecC-Cc
Q 008510            5 GIISASHDCTIRLWAL--TGQVL-----MEMVG-HTAIVYSIDSHASG-LIVSGSEDRFAKIWK-D-GVCVQSIEHP-GC   72 (563)
Q Consensus         5 ~l~s~s~DgtIrlWd~--~g~~i-----~~l~g-H~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~-~~~~~~l~h~-~~   72 (563)
                      .+++-+..+.|..|++  .|...     ..+.+ +....-.+++..+| ..++....+.|.+|+ + ++.+..+..+ ..
T Consensus       190 lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~  269 (314)
T d1pjxa_         190 LIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEK  269 (314)
T ss_dssp             EEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSC
T ss_pred             EEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCC
Confidence            3444456677777776  34321     12222 22345679999999 667777788999999 4 5556667744 47


Q ss_pred             EEEEEEccCCc-E-EEEeCCCcEEEEEcC
Q 008510           73 VWDAKFLENGD-I-VTACSDGVTRIWTVH   99 (563)
Q Consensus        73 V~~v~~~p~g~-i-~sgs~Dg~Irvwd~~   99 (563)
                      ..+++|.|+++ + ++.+.+|.|..+++.
T Consensus       270 ~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         270 PSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             EEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            89999999987 4 677778888888864

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.98  E-value=0.63  Score=44.61  Aligned_cols=136  Identities=7%  Similarity=-0.013  Sum_probs=86.8

Q ss_pred             cchHHHHHHHHHhhcCCCccHH-HHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCc-hhhhHHHHHHH
Q 008510          419 PANLLTGIRAVTNLFKNSSWYS-WLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDE-EGQSHVLSAAL  496 (563)
Q Consensus       419 ~~~~ll~lR~l~N~f~~~~~~~-~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~-~~~~~l~~~~~  496 (563)
                      +..+--++.+++|+..+..... .+..+  .++..+...+...+..+|..++.++.|++......... -....++..++
T Consensus       286 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~--~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~  363 (434)
T d1q1sc_         286 TNIQKEATWTMSNITAGRQDQIQQVVNH--GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLM  363 (434)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHT--TCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHH
T ss_pred             hhhhHHHHHHHhhhccccchhHHHHhhh--hhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHH
Confidence            4456888999999988665543 33322  24445555555678889999999999998653221100 00112345556


Q ss_pred             HhhhhcccChhHHHHHHHHHhhhhchh-------HHHHHhhhcChHHHHHHHhhcCChhHHHHHHHHHH
Q 008510          497 EIAEEESIEVDSKYRALVAIGTLMLEG-------LVKKIALDFDVGNIARVAKASKETKIAEVGADIEL  558 (563)
Q Consensus       497 ~~l~~~~~~~Ea~~R~l~AlG~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ei~~  558 (563)
                      +.+.  ..|++.+...|-+|.+|+...       .....-...+.-+.++.+..++++.+.+.+..|++
T Consensus       364 ~ll~--~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~  430 (434)
T d1q1sc_         364 NLLS--AKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE  430 (434)
T ss_dssp             HHTT--SSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred             HHhc--CCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            6663  468899999999999998511       23333334455556777776778888888887764

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.92  E-value=1.6  Score=43.07  Aligned_cols=100  Identities=12%  Similarity=-0.045  Sum_probs=69.3

Q ss_pred             CcchHHHHHHHHHhhcCCCccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHH
Q 008510          418 LPANLLTGIRAVTNLFKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALE  497 (563)
Q Consensus       418 ~~~~~ll~lR~l~N~f~~~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~~  497 (563)
                      .+..+..++++|+|+..++.++..+.+.  -.+..+...+.+.+..++..++..+.|++......+..-.....+..+++
T Consensus        73 ~~~~~~~a~~~L~~l~~~~~~~~~i~~~--g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~  150 (529)
T d1jdha_          73 DVETARCTAGTLHNLSHHREGLLAIFKS--GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVA  150 (529)
T ss_dssp             CHHHHHHHHHHHHHHTTSHHHHHHHHHT--THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhCCchhHHHHHHC--CCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHH
Confidence            3456778899999999999888877654  23445555556678889999999999998642222111112224555667


Q ss_pred             hhhhcccChhHHHHHHHHHhhhhc
Q 008510          498 IAEEESIEVDSKYRALVAIGTLML  521 (563)
Q Consensus       498 ~l~~~~~~~Ea~~R~l~AlG~l~~  521 (563)
                      .+.  ..+++.......+|++|..
T Consensus       151 lL~--~~~~~~~~~a~~~L~~l~~  172 (529)
T d1jdha_         151 LLN--KTNVKFLAITTDCLQILAY  172 (529)
T ss_dssp             GGG--CCCHHHHHHHHHHHHHHHT
T ss_pred             HHH--ccChHHHHHHHHHHHHHhh
Confidence            774  4677888888899999987

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.79  E-value=0.48  Score=45.05  Aligned_cols=101  Identities=13%  Similarity=0.035  Sum_probs=65.3

Q ss_pred             CcchHHHHHHHHHhh-cCCCccHHHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHH
Q 008510          418 LPANLLTGIRAVTNL-FKNSSWYSWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAAL  496 (563)
Q Consensus       418 ~~~~~ll~lR~l~N~-f~~~~~~~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~  496 (563)
                      .|..+..++++|.|+ +.++..+..+...  -.+..+...+.+++..+|.+++..+.|++......+..-.....+..++
T Consensus        15 ~~~~~~~a~~~l~~l~~~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~v~~li   92 (457)
T d1xm9a1          15 DEKYQAIGAYYIQHTCFQDESAKQQVYQL--GGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAV   92 (457)
T ss_dssp             CTHHHHHHHHHHHHHTSSCSSHHHHHHHT--THHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCHHHHHHHHHC--CcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCChHHHH
Confidence            467789999999998 5677777776543  1233344455678999999999999999843211110000001134445


Q ss_pred             HhhhhcccChhHHHHHHHHHhhhhc
Q 008510          497 EIAEEESIEVDSKYRALVAIGTLML  521 (563)
Q Consensus       497 ~~l~~~~~~~Ea~~R~l~AlG~l~~  521 (563)
                      ..+. ...+++.....+-+|++|..
T Consensus        93 ~~l~-~~~~~~~~~~a~~~l~~l~~  116 (457)
T d1xm9a1          93 SLLR-RTGNAEIQKQLTGLLWNLSS  116 (457)
T ss_dssp             HHHT-TCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHh-ccCcHHHHHHHHHHHHHHHh
Confidence            5553 34677888888888888876

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=89.48  E-value=2.6  Score=38.74  Aligned_cols=87  Identities=10%  Similarity=0.098  Sum_probs=56.3

Q ss_pred             EEEEcCCCceeEEEecCCCcEEEEEEcCCC--eEEEEeCCCcEEEEc---CCceeEEE----e----cCCcEEEEEEccC
Q 008510           15 IRLWALTGQVLMEMVGHTAIVYSIDSHASG--LIVSGSEDRFAKIWK---DGVCVQSI----E----HPGCVWDAKFLEN   81 (563)
Q Consensus        15 IrlWd~~g~~i~~l~gH~~~V~~v~~~p~g--~l~s~s~D~tvriWd---~~~~~~~l----~----h~~~V~~v~~~p~   81 (563)
                      +..++.++..+..+...-..-+.++|+|++  ..++-+..+.|..|+   .+......    .    ....-..+++.++
T Consensus       159 v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~  238 (319)
T d2dg1a1         159 VYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSD  238 (319)
T ss_dssp             EEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTT
T ss_pred             eEEEecccceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCC
Confidence            444444555555444444556789999998  456667788899887   33322211    1    1224668999999


Q ss_pred             CcE-EEEeCCCcEEEEEcCCCc
Q 008510           82 GDI-VTACSDGVTRIWTVHSDK  102 (563)
Q Consensus        82 g~i-~sgs~Dg~Irvwd~~~~~  102 (563)
                      |+| ++....+.|.+||. .++
T Consensus       239 G~l~Va~~~~g~V~~~~p-~G~  259 (319)
T d2dg1a1         239 DNLYVAMYGQGRVLVFNK-RGY  259 (319)
T ss_dssp             CCEEEEEETTTEEEEECT-TSC
T ss_pred             CCEEEEEcCCCEEEEECC-CCc
Confidence            994 66667899999996 455

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.39  E-value=0.87  Score=43.06  Aligned_cols=100  Identities=12%  Similarity=0.015  Sum_probs=60.2

Q ss_pred             HhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHHHhhhhcccChhHHHHHHHHHhhhhc-hhHHHH-Hh
Q 008510          452 AFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAALEIAEEESIEVDSKYRALVAIGTLML-EGLVKK-IA  529 (563)
Q Consensus       452 ~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~Ea~~R~l~AlG~l~~-~~~~~~-~~  529 (563)
                      .+...+.+.+..+|..+|..+-|++......+..-.....+..+++++.  ..+++.....+-||++|.+ +++.+. +.
T Consensus         6 ~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~v~~~a~~aL~~L~~~~~~~~~~i~   83 (457)
T d1xm9a1           6 KAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLR--SPNQNVQQAAAGALRNLVFRSTTNKLETR   83 (457)
T ss_dssp             HHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTT--SSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHC--CCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3445566789999999999999998542221111111223555677774  4688999999999999987 333333 33


Q ss_pred             hhcChHHHHHHHhhcCChhHHHHH
Q 008510          530 LDFDVGNIARVAKASKETKIAEVG  553 (563)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~i~~~~  553 (563)
                      +.-++..++.-++...+..+++.+
T Consensus        84 ~~g~v~~li~~l~~~~~~~~~~~a  107 (457)
T d1xm9a1          84 RQNGIREAVSLLRRTGNAEIQKQL  107 (457)
T ss_dssp             HTTCHHHHHHHHTTCCCHHHHHHH
T ss_pred             HCCChHHHHHHHhccCcHHHHHHH
Confidence            333344455544444444444433

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.97  E-value=2.3  Score=41.55  Aligned_cols=137  Identities=9%  Similarity=-0.027  Sum_probs=81.9

Q ss_pred             CcchHHHHHHHHHhhcCCCccHH-HHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCc-h--hhhHHHH
Q 008510          418 LPANLLTGIRAVTNLFKNSSWYS-WLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDE-E--GQSHVLS  493 (563)
Q Consensus       418 ~~~~~ll~lR~l~N~f~~~~~~~-~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~-~--~~~~l~~  493 (563)
                      .+..+--++.+++|++.+..... .+..  ..++..+...+...+..++..++.++.|++.......+. .  ....++.
T Consensus       343 ~~~i~~~~~~~l~nl~~~~~~~~~~i~~--~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~  420 (503)
T d1wa5b_         343 KENIKKEACWTISNITAGNTEQIQAVID--ANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIK  420 (503)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHH
T ss_pred             CHHHHHHHHHHHHHHhhccHHHHHHHHH--ccccchhHHhcccCChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHH
Confidence            34556788999999998765433 3332  223334444444556778999999999998754332211 0  0122355


Q ss_pred             HHHHhhhhcccChhHHHHHHHHHhhhhchhHH------------HHHhhhcChHHHHHHHhhcCChhHHHHHHHHHH
Q 008510          494 AALEIAEEESIEVDSKYRALVAIGTLMLEGLV------------KKIALDFDVGNIARVAKASKETKIAEVGADIEL  558 (563)
Q Consensus       494 ~~~~~l~~~~~~~Ea~~R~l~AlG~l~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ei~~  558 (563)
                      .+++.+.  ..|++.+...|-||-+|+..++.            .+.....|.-+.++.+..+.+..+.+.|.+|++
T Consensus       421 ~l~~~L~--~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq~~~~~~i~~~A~~il~  495 (503)
T d1wa5b_         421 PLCDLLE--IADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIE  495 (503)
T ss_dssp             HHHHHTT--TCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHH
T ss_pred             HHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            5667774  46889999999999998852211            111222333333444444566778888888765

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=86.05  E-value=4.1  Score=36.79  Aligned_cols=85  Identities=15%  Similarity=0.206  Sum_probs=58.3

Q ss_pred             EEEEEECCCcEEEEcCCC-------ce--eEEEecCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc-CCceeEEEecCC-c
Q 008510            5 GIISASHDCTIRLWALTG-------QV--LMEMVGHTAIVYSIDSHASG-LIVSGSEDRFAKIWK-DGVCVQSIEHPG-C   72 (563)
Q Consensus         5 ~l~s~s~DgtIrlWd~~g-------~~--i~~l~gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd-~~~~~~~l~h~~-~   72 (563)
                      .+++-+..+.|..++++.       +.  ...+.+-.+....+++..+| ..++.-..+.|..|| +++.+..+..|. .
T Consensus       162 l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G~~~~~i~lP~~~  241 (295)
T d2ghsa1         162 GYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVPGKQ  241 (295)
T ss_dssp             EEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEECSCSB
T ss_pred             EEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCCCcEeeEecCCCCc
Confidence            455666677787777621       11  11223445667889999999 555555677899999 999999999765 7


Q ss_pred             EEEEEEc-cCCc--EEEEeC
Q 008510           73 VWDAKFL-ENGD--IVTACS   89 (563)
Q Consensus        73 V~~v~~~-p~g~--i~sgs~   89 (563)
                      +++++|- |+.+  ++|.+.
T Consensus       242 ~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         242 TTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             EEEEEEESTTSCEEEEEEBC
T ss_pred             eEEEEEeCCCCCEEEEEECC
Confidence            9999996 5655  455444

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=85.80  E-value=12  Score=33.52  Aligned_cols=93  Identities=15%  Similarity=0.065  Sum_probs=57.2

Q ss_pred             EEEEECCCcEEEEcC-CCceeEEEecC-----CCcEEEEEEcCCC-eEEEEeC----CCcEEEEc--CCceeEEEecCCc
Q 008510            6 IISASHDCTIRLWAL-TGQVLMEMVGH-----TAIVYSIDSHASG-LIVSGSE----DRFAKIWK--DGVCVQSIEHPGC   72 (563)
Q Consensus         6 l~s~s~DgtIrlWd~-~g~~i~~l~gH-----~~~V~~v~~~p~g-~l~s~s~----D~tvriWd--~~~~~~~l~h~~~   72 (563)
                      ++.|+.+| +.++|. +|+.. .+...     ...++++.+.|+| ..++...    .+.-.+|.  .++.......-..
T Consensus        72 l~va~~~g-l~~~d~~tg~~~-~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~  149 (295)
T d2ghsa1          72 QLIASDDG-LFLRDTATGVLT-LHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISI  149 (295)
T ss_dssp             EEEEETTE-EEEEETTTCCEE-EEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESS
T ss_pred             EEEEEeCc-cEEeecccceee-EEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCC
Confidence            44455565 788898 56543 33221     1357889999999 4443321    12345565  5554444443335


Q ss_pred             EEEEEEccCCc--EEEEeCCCcEEEEEcCC
Q 008510           73 VWDAKFLENGD--IVTACSDGVTRIWTVHS  100 (563)
Q Consensus        73 V~~v~~~p~g~--i~sgs~Dg~Irvwd~~~  100 (563)
                      -..++|+++++  +++.+..+.|..|+++.
T Consensus       150 ~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~  179 (295)
T d2ghsa1         150 PNSICFSPDGTTGYFVDTKVNRLMRVPLDA  179 (295)
T ss_dssp             EEEEEECTTSCEEEEEETTTCEEEEEEBCT
T ss_pred             cceeeecCCCceEEEeecccceeeEeeecc
Confidence            67889999987  46667788999998764

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=85.56  E-value=13  Score=33.65  Aligned_cols=88  Identities=20%  Similarity=0.140  Sum_probs=56.5

Q ss_pred             CCCEEEEEECCCcEEEEcCCC-ceeEEEecCCCcEEEEEEcCCC-eEEEEeCC--Cc--EEEEc-CCceeEEEe-c---C
Q 008510            2 PGVGIISASHDCTIRLWALTG-QVLMEMVGHTAIVYSIDSHASG-LIVSGSED--RF--AKIWK-DGVCVQSIE-H---P   70 (563)
Q Consensus         2 ~g~~l~s~s~DgtIrlWd~~g-~~i~~l~gH~~~V~~v~~~p~g-~l~s~s~D--~t--vriWd-~~~~~~~l~-h---~   70 (563)
                      +|+.+++-..++.|..|+.++ +....+.........++++++| .+++...+  ..  +...+ .+..+..+. +   .
T Consensus        50 ~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  129 (319)
T d2dg1a1          50 QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTA  129 (319)
T ss_dssp             TSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSC
T ss_pred             CCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcc
Confidence            467777777788898898854 4444555566678899999999 55554332  23  33334 443333333 2   2


Q ss_pred             CcEEEEEEccCCcEEEEeC
Q 008510           71 GCVWDAKFLENGDIVTACS   89 (563)
Q Consensus        71 ~~V~~v~~~p~g~i~sgs~   89 (563)
                      .....+++.++|++..+..
T Consensus       130 ~~~nd~~~d~~G~l~vtd~  148 (319)
T d2dg1a1         130 YCIDDMVFDSKGGFYFTDF  148 (319)
T ss_dssp             CCEEEEEECTTSCEEEEEC
T ss_pred             cCCcceeEEeccceeeccc
Confidence            2578899999999655543

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.51  E-value=1.8  Score=41.18  Aligned_cols=100  Identities=12%  Similarity=0.091  Sum_probs=64.7

Q ss_pred             CcchHHHHHHHHHhhcCCCccH-HHHHhhHHHHHHHhhhhccCCChhHHHHHHHHHHHHHhhhhhcCCchhhhHHHHHHH
Q 008510          418 LPANLLTGIRAVTNLFKNSSWY-SWLQKNRSEILDAFSSCYSSSNKNVQLSYSTLILNYAVLLIEKKDEEGQSHVLSAAL  496 (563)
Q Consensus       418 ~~~~~ll~lR~l~N~f~~~~~~-~~~~~~~~~il~~~~~~~~~~~k~~~~a~atl~~N~s~~~~~~~~~~~~~~l~~~~~  496 (563)
                      .+..+.-+++++.|+..+.... ..+..  ..+++.+...+.+.+..+|..++..+.|++.........-.....+..++
T Consensus       243 ~~~~~~~al~~l~~l~~~~~~~~~~~~~--~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li  320 (434)
T d1q1sc_         243 ELPIVTPALRAIGNIVTGTDEQTQKVID--AGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV  320 (434)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHH
T ss_pred             hhhhhhchhhhhhhHHhhhhHHHHHHHh--ccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHH
Confidence            3456788899999998766433 33332  33455555666778888999999999999753222111000112344555


Q ss_pred             HhhhhcccChhHHHHHHHHHhhhhc
Q 008510          497 EIAEEESIEVDSKYRALVAIGTLML  521 (563)
Q Consensus       497 ~~l~~~~~~~Ea~~R~l~AlG~l~~  521 (563)
                      ..+.  ..+.+....++.||+++..
T Consensus       321 ~~l~--~~~~~v~~~a~~~l~nl~~  343 (434)
T d1q1sc_         321 GVLS--KADFKTQKEAAWAITNYTS  343 (434)
T ss_dssp             HHHH--SSCHHHHHHHHHHHHHHHH
T ss_pred             HHHh--ccChHHHHHHHHHHHHHHh
Confidence            6663  4578889999999999987

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.08  E-value=7.3  Score=37.69  Aligned_cols=95  Identities=9%  Similarity=0.022  Sum_probs=57.4

Q ss_pred             CCCEEEEEE---------CCCcEEEEcC-CCceeEEEe---cCCCcEEEEEEcCCC-eEEEEeCCCcEEEEc--CCceeE
Q 008510            2 PGVGIISAS---------HDCTIRLWAL-TGQVLMEMV---GHTAIVYSIDSHASG-LIVSGSEDRFAKIWK--DGVCVQ   65 (563)
Q Consensus         2 ~g~~l~s~s---------~DgtIrlWd~-~g~~i~~l~---gH~~~V~~v~~~p~g-~l~s~s~D~tvriWd--~~~~~~   65 (563)
                      ||++++...         ..+.+.++|+ +++. ..+.   .....+....|+|+| .+|-.. ++.+.+.+  .+..++
T Consensus        71 D~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~-~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~  148 (465)
T d1xfda1          71 DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIR  148 (465)
T ss_dssp             TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEE
T ss_pred             CCCeEEEEEcccceeEeeccccEEEEEccCCce-eeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEE
Confidence            566666554         3567888898 5543 3332   233456668899999 655544 67788887  444444


Q ss_pred             EEe--cCCcE-----------------EEEEEccCCc-EEEEe-CCCcEEEEEc
Q 008510           66 SIE--HPGCV-----------------WDAKFLENGD-IVTAC-SDGVTRIWTV   98 (563)
Q Consensus        66 ~l~--h~~~V-----------------~~v~~~p~g~-i~sgs-~Dg~Irvwd~   98 (563)
                      ...  ..+.|                 ..+-|+|||+ ||... .+..|..|.+
T Consensus       149 lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~  202 (465)
T d1xfda1         149 VVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMEL  202 (465)
T ss_dssp             EECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEE
T ss_pred             EecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeec
Confidence            332  11112                 4677999999 77654 3455666654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=83.04  E-value=11  Score=34.46  Aligned_cols=118  Identities=15%  Similarity=0.192  Sum_probs=64.6

Q ss_pred             EEEEEEcCCC-eEEEEeCCC-----------cEEEEc--CCce--eEEEe--cCCcEEEEEEccCCc-EEEEeCC-CcEE
Q 008510           35 VYSIDSHASG-LIVSGSEDR-----------FAKIWK--DGVC--VQSIE--HPGCVWDAKFLENGD-IVTACSD-GVTR   94 (563)
Q Consensus        35 V~~v~~~p~g-~l~s~s~D~-----------tvriWd--~~~~--~~~l~--h~~~V~~v~~~p~g~-i~sgs~D-g~Ir   94 (563)
                      +.......+| .++-||.+.           .+.+||  ++.-  +....  +.......++.++|. ++.|+.+ ..+.
T Consensus        22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~  101 (387)
T d1k3ia3          22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS  101 (387)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred             cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCccee
Confidence            3444445567 666666431           367899  3332  22222  333445677889999 4555544 5899


Q ss_pred             EEEcCCCceeceeeecccccccceeEEeeccCCceEEEeCCCCcee-eecccCCCeEEEEecCCC-----eEEEEEeccc
Q 008510           95 IWTVHSDKVADSLELEAYASELSQYKLCRKKVGGLKLEDLPGLEAL-QIPGTNAGQTKVVREGDN-----GVAYSWDMKE  168 (563)
Q Consensus        95 vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~d~~~~~~l-~~~g~~dg~~~l~~~~~~-----~~~~~wd~~~  168 (563)
                      +||..+.+.....                         +++..... ......||.+.++.....     ..+..||..+
T Consensus       102 ~yd~~~~~w~~~~-------------------------~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~  156 (387)
T d1k3ia3         102 LYDSSSDSWIPGP-------------------------DMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS  156 (387)
T ss_dssp             EEEGGGTEEEECC-------------------------CCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             EecCccCcccccc-------------------------cccccccccceeeecCCceeeeccccccccccceeeeecCCC
Confidence            9998887643211                         11111111 111233555555554321     2367899999


Q ss_pred             ceEEEeCcE
Q 008510          169 QKWDKLGEV  177 (563)
Q Consensus       169 ~~w~~~g~v  177 (563)
                      ..|..+...
T Consensus       157 ~~W~~~~~~  165 (387)
T d1k3ia3         157 KTWTSLPNA  165 (387)
T ss_dssp             TEEEEETTS
T ss_pred             CceeecCCC
Confidence            999987543