Citrus Sinensis ID: 008516

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560---
Protein Sequence
MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQYGRRIYDHVFGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRMTYCLEHITKKMLLMPVEPYEPNKSCYVCSETPLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVKIQASSVTLCSSPPDFCCSCNDADVLLFCFFNIFSLYFMSFYYLFLSCLRCYLSFLLQLLMGQCLP
Secondary Structure (PSIPRED)
cccHHHHHHHHcccEEEEcccHHcHHHHHHHHHcccccEEEEEcccccccccccccccccccccccHHHHHHHHHHHHccccEEEEEEcccccccccHHHHHcccEEEEccccHHHHHHHHHHHHHccccEEEcccccccccEEEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHccccccHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEcccccEEEEEcccccccccccccccccEEEEEccccccHHHHHHHHHHHHccccccEEEEccEEEEEEcccccHHHHHHHHccHHHHcccccEEEEccccccEEEEEEccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHccEEEEcccHHHHHHHHHHHHHcccEEEEEcccccEHccccccEEEcHHHccccHHHHHHHHHHHHccccEEEEEccccccccccHHHHHHccEEEEccccHHHHHHHHHHHHHccccEEEEcccccccEEEEEEcccccccccccccccccccEEEEccccccHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEcccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHccccccccccccccccccccccccccccccEEEEEEEcccccHHHHHHHHHHHHccccccEEEEcccEEEEEcccccccHHHHHHHHHHHcccccccEEEEEccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MVSERQLEAIKGAKVLMVGAGGIGCELLKTLAlsgfqdihiidmdtievsnLNRQflfrqshvgqskaKVARDAVlkfrpqmsitahhanvkdpkfnVEFFKQFNVVLNGLDNLDARRHVNRLCLaadvplvesgttgflGQVTVHVkgktecyecqpkpapktypvctitstpskfvHCIVWAKDLLFAKLfgdknqendlnvrssdasssahaedvfvrrkdedidqygRRIYDHVFGYNIEVASsneetwknrnrpkpiysadvmpenlteqngnvakncVVDTSSVSAMASlglknpqdtwTLLESSRIFLEALKLFFAKREKEignlsfdkddQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRMTYCLEHITKkmllmpvepyepnkscyvcsetplsleintsrSKLRDFVEKIVKAKLginfplimhgsnllyevgddldEVEVANYAANLEKVKIQASsvtlcssppdfccscndadVLLFCFFNIFSLYFMSFYYLFLSCLRCYLSFLLQLLMGQCLP
Flexible Loop (DISEMBL)
MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFrqshvgqskakVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAAdvplvesgttgfLGQVTVHVKGKTEcyecqpkpapktyPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQENdlnvrssdasssahaedvfvrrkdedidqYGRRIYDHVFGYNIEVAssneetwknrnrPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIFLEALKLFFAKREKEIGnlsfdkddQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRMTYCLEHITKKMLLMPVEPYEPNKSCYVCSETplsleintsrskLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVKIQASSVTLCSSPPDFCCSCNDADVLLFCFFNIFSLYFMSFYYLFLSCLRCYLSFLLQLLMGQCLP
Low Complexity Region (SEG)
MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRssdasssahaEDVFVRRKDEDIDQYGRRIYDHVFGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRMTYCLEHITKKMLLMPVEPYEPNKSCYVCSETPLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVKIQASSVTLCSSPPDFCCSCNDADVLLFCFFNIfslyfmsfyylflsCLRCYLSFLLQLLMGQCLP
Disordered region (IsUnstruct)
********AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFG************************FVRRKDEDIDQYGRRIYDHVFGYNIEVA********************************VAKNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRMTYCLEHITKKMLLMPVEPYEPNKSCYVCSETPLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVKIQASSVTLCSSPPDFCCSCNDADVLLFCFFNIFSLYFMSFYYLFLSCLRCYLSFLLQLLMGQC**
Disordered Region (DISOPRED)
MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECY*****P*PKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQYGRRIYDHVFGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSA************WTLLESSRIFLEALKLFFA*********SFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRMTYCLEHITKKMLLMPVEPYEPNKSCYVCSETPLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLD*****NY*ANLEKVKIQASSVTLCSSPPDFCCSCNDADVLLFCFFNIFSLYFMSFYYLFLSCLRCYLSFLLQLLMGQCLP
Disordered Region (DISEMBL)
MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSH********ARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQEND*************AEDVFVRRKDEDIDQYGRRIYDHVFGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRMTYCLEHITKKMLLMPVEPYEPNKSCYVCSETPLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVKIQASSVTLCSSPPDFCCSCNDADVLLFCFFNIFSLYFMSFYYLFLSCLRCYLSFLLQLLMGQCLP
Disordered Region (DISPRO)
MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQYGRRIYDHVFGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRMTYCLEHITKKMLLMPVEPYEPNKSCYVCSETPLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVKIQASSVTLCSSPPDFCCSCNDADVLLFCFFNIFSLYFMSFYYLFLSCLRCYLSFLLQLLMGQCLP
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQYGRRIYDHVFGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRMTYCLEHITKKMLLMPVEPYEPNKSCYVCSETPLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVKIQASSVTLCSSPPDFCCSCNDADVLLFCFFNIFSLYFMSFYYLFLSCLRCYLSFLLQLLMGQCLP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	563	2.2.26 [Sep-21-2011]
Q9SJT1	700	SUMO-activating enzyme su	no	no	0.941	0.757	0.769	0.0
Q54L40	661	SUMO-activating enzyme su	yes	no	0.834	0.711	0.406	1e-104
Q9Z1F9	638	SUMO-activating enzyme su	yes	no	0.785	0.692	0.430	1e-103
Q9UBT2	640	SUMO-activating enzyme su	yes	no	0.795	0.7	0.427	1e-103
O42939	628	Ubiquitin-activating enzy	yes	no	0.809	0.726	0.415	1e-102
Q28GH3	641	SUMO-activating enzyme su	yes	no	0.786	0.691	0.425	1e-101
Q7ZY60	641	SUMO-activating enzyme su	N/A	no	0.786	0.691	0.425	1e-101
Q7SXG4	650	SUMO-activating enzyme su	yes	no	0.786	0.681	0.415	1e-101
Q642Q1	641	SUMO-activating enzyme su	N/A	no	0.786	0.691	0.422	1e-101
Q9NAN1	582	SUMO-activating enzyme su	yes	no	0.841	0.814	0.367	2e-88

>sp|Q9SJT1|SAE2_ARATH SUMO-activating enzyme subunit 2 OS=Arabidopsis thaliana GN=SAE2 PE=1 SV=1

 Score =  852 bits (2201), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/538 (76%), Positives = 467/538 (86%), Gaps = 8/538 (1%)

Query: 1   MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQ 60
           M +++Q  AIKGAKVLMVGAGGIGCELLKTLALSGF+DIHIIDMDTIEVSNLNRQFLFR+
Sbjct: 1   MATQQQQSAIKGAKVLMVGAGGIGCELLKTLALSGFEDIHIIDMDTIEVSNLNRQFLFRR 60

Query: 61  SHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHV 120
           SHVGQSKAKVARDAVL+FRP ++I ++HANVK+P+F+V+FFKQF+VVLNGLDNLDARRHV
Sbjct: 61  SHVGQSKAKVARDAVLRFRPNINIRSYHANVKNPEFDVDFFKQFDVVLNGLDNLDARRHV 120

Query: 121 NRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHC 180
           NRLCLAADVPLVESGTTGFLGQVTVH+KGKTECYECQ KPAPKTYPVCTITSTP+KFVHC
Sbjct: 121 NRLCLAADVPLVESGTTGFLGQVTVHIKGKTECYECQTKPAPKTYPVCTITSTPTKFVHC 180

Query: 181 IVWAKDLLFAKLFGDKNQENDLNVRSSD-ASSSAHAEDVFVRRKDEDIDQYGRRIYDHVF 239
           IVWAKDLLFAKLFGDKNQ+NDLNVRS++ ASSS   EDVF R +DEDI+QYGR+IYDHVF
Sbjct: 181 IVWAKDLLFAKLFGDKNQDNDLNVRSNNSASSSKETEDVFERSEDEDIEQYGRKIYDHVF 240

Query: 240 GYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSS--VSAMASLG 297
           G NIE A SNEETWKNR RP+PIYS DV+PE+LT+QNG+  +NC V      VSAM SLG
Sbjct: 241 GSNIEAALSNEETWKNRRRPRPIYSKDVLPESLTQQNGS-TQNCSVTDGDLMVSAMPSLG 299

Query: 298 LKNPQDTWTLLESSRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFG 357
           LKNPQ+ W L ++S +F+EALKLFFAKR+KEIG+L+FDKDDQLAVEFVTAAANIRA SFG
Sbjct: 300 LKNPQELWGLTQNSLVFIEALKLFFAKRKKEIGHLTFDKDDQLAVEFVTAAANIRAESFG 359

Query: 358 ISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRMTYCLEHITKKML 417
           I LHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVL KD DK+RMTYCLEH +KK+L
Sbjct: 360 IPLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLKKDVDKFRMTYCLEHPSKKLL 419

Query: 418 LMPVEPYEPNKSCYVCSETPLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYE 477
           LMP+EPYEPN +CYVCSETPL LEINT +SKLRD V+KIVK KLG+N PLIMHG++LLYE
Sbjct: 420 LMPIEPYEPNPACYVCSETPLVLEINTRKSKLRDLVDKIVKTKLGMNLPLIMHGNSLLYE 479

Query: 478 VGDDLDEVEVANYAANLEKVKIQASSVTLCSSPPDFCCSCNDADVLLFCFFNIFSLYF 535
           VGDDLD++ VANY ANLEK   +  S  L  S      +  D    L C  N+   +F
Sbjct: 480 VGDDLDDIMVANYNANLEKYLSELPSPILNGS----ILTVEDLQQELSCKINVKHRFF 533

The dimeric enzyme acts as a E1 ligase for SUMO1 and SUMO2. It mediates ATP-dependent activation of SUMO proteins and formation of a thioester with a conserved cysteine residue on SAE2.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q54L40|SAE2_DICDI SUMO-activating enzyme subunit 2 OS=Dictyostelium discoideum GN=uba2 PE=3 SV=1

 Score =  379 bits (974), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/507 (40%), Positives = 317/507 (62%), Gaps = 37/507 (7%)

Query: 2   VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQS 61
           + +   + I+  K+L+VGAGGIGCELLK L L+GF++I IID+DTI++SNLNRQFLFR+ 
Sbjct: 12  LGQSTFDKIQTCKILVVGAGGIGCELLKNLVLTGFKNIDIIDLDTIDISNLNRQFLFRKQ 71

Query: 62  HVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVN 121
           H+G SKAK+A+++V+K+  Q++ITAHH +VK  +F  EFFKQF++V+N LDN+ ARRHVN
Sbjct: 72  HIGMSKAKIAKESVMKYNEQVNITAHHGDVKSSEFGSEFFKQFDLVMNALDNISARRHVN 131

Query: 122 RLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCI 181
           RLCL+ DVP++ESGT G+LGQV+V  KGKTEC+ECQP   PK + VCTI + PS  +HCI
Sbjct: 132 RLCLSVDVPMIESGTAGYLGQVSVIRKGKTECFECQPIAVPKQFAVCTIRTNPSAPIHCI 191

Query: 182 VWAKDLLFAKLFGDK------------NQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQ 229
           VWAK +LF KLFG K            + +N++   + +  +    E + + ++      
Sbjct: 192 VWAK-MLFGKLFGPKDDDGGGDSSSLTDLDNNIIHGTEELGNIKRDEQLLIEKE----KG 246

Query: 230 YGRRIYDHVFGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSS 289
           + R ++  +F  +IE      + WK++  P  +   +++      Q        +     
Sbjct: 247 FKRWVFHKIFHTDIETLIHMPDLWKDKQPPTSLKLDEILSSKEVSQAEEEGDQLI----- 301

Query: 290 VSAMASLGLKNP-QDTWTLLESSRIFLEALKLFFAKREKEIGN---LSFDKDDQLAVEFV 345
                    K P Q  WT  E+  +FL+ L+    K++ +  N   +++DKDD+LA+ FV
Sbjct: 302 --------FKLPDQKQWTFKENVEVFLDCLEKL--KQQFDQSNSKPMTWDKDDELALSFV 351

Query: 346 TAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRM 405
            +A+NIR+  FGI + S F+ K +AGNI+ A+ATTNA+I GLIV+EAIKV+    D+   
Sbjct: 352 CSASNIRSKIFGIPMKSRFDVKSMAGNIIPAIATTNAVIGGLIVMEAIKVVDGRFDQCLS 411

Query: 406 TYCLEHITKKMLLMPVEPYEPNKSCYVCSETPLSLEINTSRSKLRDFVEKIVKAKLGINF 465
           TY  +  + K LLMP +    N  C+VC+ + +   +NT ++ +  F++ ++K  L +N 
Sbjct: 412 TYLYQLPSGKRLLMPTQLEPQNPKCFVCNRSFIICRLNTEKTTISQFIDHVLKKSLAVNE 471

Query: 466 PLIMHGSNLLYEVGD-DLDEVEVANYA 491
           P++  G++++YE GD DL + E+   +
Sbjct: 472 PILTVGNDIIYEGGDQDLSKEEIEQRS 498

The dimeric enzyme acts as a E1 ligase for sumo. It mediates ATP-dependent activation of sumo and formation of a thioester with a conserved cysteine residue on sae2.

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9Z1F9|SAE2_MOUSE SUMO-activating enzyme subunit 2 OS=Mus musculus GN=Uba2 PE=2 SV=1

 Score =  376 bits (965), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 210/488 (43%), Positives = 305/488 (62%), Gaps = 46/488 (9%)

Query: 5   RQL-EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHV 63
           R+L EA+ G +VL+VGAGGIGCELLK L L+GF  I +ID+DTI+VSNLNRQFLF++ HV
Sbjct: 9   RELAEAVSGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHV 68

Query: 64  GQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL 123
           G+SKA+VA+++VL+F PQ +I AHH ++ +P +NVEFF+QF +V+N LDN  AR HVNR+
Sbjct: 69  GRSKAQVAKESVLQFHPQANIEAHHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRM 128

Query: 124 CLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVW 183
           CLAADVPL+ESGT G+LGQVT   KG TECYEC PKP  +T+P CTI +TPS+ +HCIVW
Sbjct: 129 CLAADVPLIESGTAGYLGQVTTIKKGVTECYECHPKPTQRTFPGCTIRNTPSEPIHCIVW 188

Query: 184 AKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQYGRRI--------- 234
           AK  LF +LFG+++ + +++   +D  ++    +   R +  + D   +RI         
Sbjct: 189 AK-YLFNQLFGEEDADQEVSPDRADPEAAWEPTEAEARARASNEDGDIKRISTKEWAKST 247

Query: 235 -YDHV------FGYNIEVASSNEETWKNRNRPKPIYSADVMPE---NLTEQNGNVAKNCV 284
            YD V      F  +I    + ++ W+ R  P P+  A+V  +   N  +QN        
Sbjct: 248 GYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAEVQSQGEANADQQN-------- 299

Query: 285 VDTSSVSAMASLGLKNPQ----DTWTLLESSRIFLEALKLFFAKREKEIGNLSFDKDDQL 340
                      LGLK+ Q     ++  L S  I  E L++  A++  +   L +DKDD  
Sbjct: 300 --------EPQLGLKDQQVLDVKSYASLFSKSI--ETLRVHLAEK-GDGAELIWDKDDPP 348

Query: 341 AVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDT 400
           A++FVT+AAN+R   F +++ S F+ K +AGNI+ A+ATTNA+IAGLIV+E +K+L    
Sbjct: 349 AMDFVTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKILSGKI 408

Query: 401 DKYRMTYCLEHIT-KKMLLMPVEPYEPNKSCYVCSETP-LSLEINTSRSKLRDFVEKIVK 458
           D+ R  +  +    +K LL+P     PN +CYVC+  P +++ +N  +  +    +KIVK
Sbjct: 409 DQCRTIFLNKQPNPRKKLLVPCALDPPNTNCYVCASKPEVTVRLNVHKVTVLTLQDKIVK 468

Query: 459 AKLGINFP 466
            K  +  P
Sbjct: 469 EKFAMVAP 476

The heterodimer acts as a E1 ligase for SUMO1, SUMO2, SUMO3, and probably SUMO4. It mediates ATP-dependent activation of SUMO proteins followed by formation of a thioester bond between a SUMO protein and a conserved active site cysteine residue on UBA2/SAE2.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9UBT2|SAE2_HUMAN SUMO-activating enzyme subunit 2 OS=Homo sapiens GN=UBA2 PE=1 SV=2

 Score =  375 bits (963), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/484 (42%), Positives = 307/484 (63%), Gaps = 36/484 (7%)

Query: 5   RQL-EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHV 63
           R+L EA+ G +VL+VGAGGIGCELLK L L+GF  I +ID+DTI+VSNLNRQFLF++ HV
Sbjct: 9   RELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHV 68

Query: 64  GQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL 123
           G+SKA+VA+++VL+F P+ +I A+H ++ +P +NVEFF+QF +V+N LDN  AR HVNR+
Sbjct: 69  GRSKAQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRM 128

Query: 124 CLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVW 183
           CLAADVPL+ESGT G+LGQVT   KG TECYEC PKP  +T+P CTI +TPS+ +HCIVW
Sbjct: 129 CLAADVPLIESGTAGYLGQVTTIKKGVTECYECHPKPTQRTFPGCTIRNTPSEPIHCIVW 188

Query: 184 AKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQYGRRI--------- 234
           AK  LF +LFG+++ + +++   +D  ++    +   R +  + D   +RI         
Sbjct: 189 AK-YLFNQLFGEEDADQEVSPDRADPEAAWEPTEAEARARASNEDGDIKRISTKEWAKST 247

Query: 235 -YDHV------FGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDT 287
            YD V      F  +I    + ++ W+ R  P P+  A+V  +   E N +  +N     
Sbjct: 248 GYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAEVQSQG-EETNASDQQN----- 301

Query: 288 SSVSAMASLGLKNPQDTWTLLESSRIF---LEALKLFFAKREKEIGNLSFDKDDQLAVEF 344
                   LGLK+ Q    +   +R+F   +E L++  A++  +   L +DKDD  A++F
Sbjct: 302 -----EPQLGLKD-QQVLDVKSYARLFSKSIETLRVHLAEK-GDGAELIWDKDDPSAMDF 354

Query: 345 VTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYR 404
           VT+AAN+R   F +++ S F+ K +AGNI+ A+ATTNA+IAGLIV+E +K+L    D+ R
Sbjct: 355 VTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKILSGKIDQCR 414

Query: 405 MTYCLEHIT-KKMLLMPVEPYEPNKSCYVCSETP-LSLEINTSRSKLRDFVEKIVKAKLG 462
             +  +    +K LL+P     PN +CYVC+  P +++ +N  +  +    +KIVK K  
Sbjct: 415 TIFLNKQPNPRKKLLVPCALDPPNPNCYVCASKPEVTVRLNVHKVTVLTLQDKIVKEKFA 474

Query: 463 INFP 466
           +  P
Sbjct: 475 MVAP 478

The heterodimer acts as a E1 ligase for SUMO1, SUMO2, SUMO3, and probably SUMO4. It mediates ATP-dependent activation of SUMO proteins followed by formation of a thioester bond between a SUMO protein and a conserved active site cysteine residue on UBA2/SAE2.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|O42939|UBA2_SCHPO Ubiquitin-activating enzyme E1-like OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=uba2 PE=1 SV=1

 Score =  371 bits (952), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 204/491 (41%), Positives = 296/491 (60%), Gaps = 35/491 (7%)

Query: 7   LEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQS 66
           L   K AKVL+VGAGGIGCELLK L +SG +++HIID+DTI++SNLNRQFLFR+ HV Q 
Sbjct: 20  LRNFKSAKVLLVGAGGIGCELLKNLLMSGVKEVHIIDLDTIDLSNLNRQFLFRKKHVKQP 79

Query: 67  KAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA 126
           KA VA      F P + + A+HAN+K+ +FNV +F+QF++V N LDNLDARRHVN+ CL 
Sbjct: 80  KAIVAAKTASSFNPNVKLEAYHANIKEDRFNVAWFRQFDLVFNALDNLDARRHVNKQCLL 139

Query: 127 ADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKD 186
           A VPL+ESGTTGFLGQV V + GKTECY+C PK  PKTYPVCTI STPS+ +HC+VWAK 
Sbjct: 140 ASVPLIESGTTGFLGQVQVIIHGKTECYDCNPKEPPKTYPVCTIRSTPSQPIHCVVWAKS 199

Query: 187 LLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQYG----------RRIYD 236
             F +LF + +QE+D  + +  A+     E   + R+  ++++             +I+ 
Sbjct: 200 YFFPQLFSN-DQESDGIIDNVSANEMERREIAELARETTELNELRSSIGQSDNGFEKIFT 258

Query: 237 HVFGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASL 296
            +F  +I       + W  R+ PK +  ++++ EN                   +  A+ 
Sbjct: 259 KMFTKDIVRLREVPDAWTYRSPPKELSYSELL-EN-------------------AEKATS 298

Query: 297 GLKNPQDTWTLLESSRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASF 356
              N Q+ W + ES  +  ++++    + +    +LSFDKDD+  ++FV AAAN+RA  F
Sbjct: 299 PWLNEQNVWNVAESFAVLRDSIRRLALRSKSSKDDLSFDKDDKDTLDFVAAAANLRAHVF 358

Query: 357 GISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRMTYCLEHITKKM 416
           GI   S F+ K +AGNI+ A+ATTNA+IAGL + +AIKVL  D +  +  Y  +  T+  
Sbjct: 359 GIQQLSEFDIKQMAGNIIPAIATTNAVIAGLCITQAIKVLQGDLNDLKNIYLAKRPTR-- 416

Query: 417 LLMPVEPYEPNKSCYVCSETPLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLY 476
           +L   +  +PN  C  CS   L L +N     LR  V+ I+K++L  +  + +    L+Y
Sbjct: 417 VLHCEKTCKPNPYCPTCSFVLLQLGVNDKNMTLRVLVDDILKSRLHYSEEVSVLNDKLIY 476

Query: 477 --EVGDDLDEV 485
             +  D+LD+ 
Sbjct: 477 DPDFDDNLDKT 487

The dimeric enzyme acts as a SUMO/pmt3 E1 ligase. It mediates ATP-dependent activation of pmt3 and formation of a thioester with a conserved cysteine residue on aos1.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q28GH3|SAE2_XENTR SUMO-activating enzyme subunit 2 OS=Xenopus tropicalis GN=uba2 PE=2 SV=1

 Score =  370 bits (949), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 204/480 (42%), Positives = 315/480 (65%), Gaps = 37/480 (7%)

Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
           EA+  +++L+VGAGGIGCELLK L L+GF ++ +ID+DTI+VSNLNRQFLF++ HVG+SK
Sbjct: 13  EAVSTSRLLVVGAGGIGCELLKNLVLTGFINLDVIDLDTIDVSNLNRQFLFQKKHVGRSK 72

Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA 127
           A+VA+++VL+F P+ +ITA+H ++ +P +NVEFFKQF +V+N LDN  AR HVNR+CLAA
Sbjct: 73  AQVAKESVLQFCPEANITAYHDSIMNPDYNVEFFKQFTMVMNALDNNAARNHVNRMCLAA 132

Query: 128 DVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDL 187
            +PL+ESGT G+LGQVTV  KG TECYECQPKP  KT+P CTI +TPS+ +HCIVWAK  
Sbjct: 133 GIPLIESGTAGYLGQVTVVKKGVTECYECQPKPTQKTFPGCTIRNTPSEPIHCIVWAK-Y 191

Query: 188 LFAKLFGDKNQENDLNVRSSD---------ASSSAHAEDVFVRRKDEDIDQYGR------ 232
           LF +LFG+++ + ++    +D         A+  A+A +V    K     Q+ +      
Sbjct: 192 LFNQLFGEEDADQEVAPDIADPEAAWDPTQAAERANASNVDGDIKRVSTKQWAKSTGYDP 251

Query: 233 -RIYDHVFGYNIEVASSNEETWKNRNRPKPI-YSADVMPENLTEQNGNVAKNCVVDTSSV 290
            ++++ +F  +I+   + +  W+ R  P P+ +S+    EN +E            T + 
Sbjct: 252 IKLFNKLFRDDIKYLLTMDRLWRKRKPPVPLEWSSLHNKENCSE------------TQNE 299

Query: 291 SAMASLGLKNPQDTWTLLESSRIFLEALKLFFAK-REKEIG-NLSFDKDDQLAVEFVTAA 348
           S++   GLK+ Q    +   +++F ++++    + REK  G  L +DKDD  A++FVTAA
Sbjct: 300 SSLQ--GLKD-QKVLDVTSCAQLFSKSVETLREQLREKGNGAELVWDKDDPPAMDFVTAA 356

Query: 349 ANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRMTYC 408
           AN+R   F +++ S F+ K +AGNI+ A+ATTNA+I+GLIV+E +K+L  +T++ R  + 
Sbjct: 357 ANLRMHIFSMNMKSRFDVKSMAGNIIPAIATTNAVISGLIVLEGLKILSGNTEQCRTVFL 416

Query: 409 LEHIT-KKMLLMPVEPYEPNKSCYVCSETP-LSLEINTSRSKLRDFVEKIVKAKLGINFP 466
            +    +K LL+P     PN SCYVC+  P +++++N  +  ++   +KI+K K  +  P
Sbjct: 417 NKQPNPRKKLLVPCSLDPPNPSCYVCAIKPEVTVKLNVHKVTVQMLQDKILKEKFAMVAP 476

The heterodimer acts as a E1 ligase for sumo1, sumo2, and sumo3. It mediates ATP-dependent activation of sumo proteins followed by formation of a thioester bond between a sumo protein and a conserved active site cysteine residue on uba2/sae2.

Xenopus tropicalis (taxid: 8364)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q7ZY60|SAE2B_XENLA SUMO-activating enzyme subunit 2-B OS=Xenopus laevis GN=uba2-b PE=2 SV=2

 Score =  369 bits (948), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 204/480 (42%), Positives = 313/480 (65%), Gaps = 37/480 (7%)

Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
           EA+  +++L+VGAGGIGCELLK L L+GF ++ +ID+DTI+VSNLNRQFLF++ HVG+SK
Sbjct: 13  EAVSASRLLVVGAGGIGCELLKNLVLTGFTNLDVIDLDTIDVSNLNRQFLFQKKHVGRSK 72

Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA 127
           A+VA+++VL+F P  SITA+H ++ +P +NVEFFKQF + +N LDN  AR HVNR+CLAA
Sbjct: 73  AQVAKESVLQFCPDASITAYHDSIMNPDYNVEFFKQFTMAMNALDNNAARNHVNRMCLAA 132

Query: 128 DVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDL 187
            +PL+ESGT G+LGQV+V  KG TECYECQPKP  KT+P CTI +TPS+ +HCIVWAK  
Sbjct: 133 GIPLIESGTAGYLGQVSVIKKGVTECYECQPKPTQKTFPGCTIRNTPSEPIHCIVWAK-Y 191

Query: 188 LFAKLFGDKNQENDLNVRSSD---------ASSSAHAEDVFVRRKDEDIDQYGR------ 232
           LF +LFG+++ + ++    +D         A+  A+A +V    K     Q+ +      
Sbjct: 192 LFNQLFGEEDADQEVAPDIADPEAAWDPTKAAERANASNVDGDIKRVSTKQWAKSTGYDP 251

Query: 233 -RIYDHVFGYNIEVASSNEETWKNRNRPKPIYSADVM-PENLTEQNGNVAKNCVVDTSSV 290
            ++++ +F  +I+   + +  W+ R  P P+  A +   EN +E         + + SS+
Sbjct: 252 IKLFNKLFRDDIKYLLTMDRLWRKRKPPIPLEWASLHNKENCSE---------IQNESSL 302

Query: 291 SAMASLGLKNPQDTWTLLESSRIFLEALKLFFAK-REKEIG-NLSFDKDDQLAVEFVTAA 348
                LGLK+ Q    +   +++F ++++    + REK  G  L +DKDD  A++FVTAA
Sbjct: 303 -----LGLKD-QKVLNVASYAQLFSKSVETLREQLREKGDGAELVWDKDDVPAMDFVTAA 356

Query: 349 ANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRMTYC 408
           AN+R   F +++ S F+ K +AGNI+ A+ATTNA+I+GLIV+E +K+L  +T++ R  + 
Sbjct: 357 ANLRMHIFSMNMKSKFDVKSMAGNIIPAIATTNAVISGLIVLEGLKILSGNTEQCRTVFL 416

Query: 409 LEHIT-KKMLLMPVEPYEPNKSCYVCSETP-LSLEINTSRSKLRDFVEKIVKAKLGINFP 466
            +    +K LL+P     PN SCYVC+  P +++++N  +  ++   +KI+K K  +  P
Sbjct: 417 NKQPNPRKKLLVPCSLDPPNPSCYVCAIKPEVTVKLNVHKVTVQMLQDKILKEKFAMVAP 476

The heterodimer acts as a E1 ligase for sumo1, sumo2, and sumo3. It mediates ATP-dependent activation of sumo proteins followed by formation of a thioester bond between a sumo protein and a conserved active site cysteine residue on uba2/sae2.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q7SXG4|SAE2_DANRE SUMO-activating enzyme subunit 2 OS=Danio rerio GN=uba2 PE=1 SV=2

 Score =  369 bits (946), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/493 (41%), Positives = 312/493 (63%), Gaps = 50/493 (10%)

Query: 5   RQL-EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHV 63
           +QL +++   +VL+VGAGGIGCELLK L L+GF++I +ID+DTI+VSNLNRQFLF++ HV
Sbjct: 10  KQLADSLSSCRVLVVGAGGIGCELLKNLVLTGFKNIEVIDLDTIDVSNLNRQFLFQKKHV 69

Query: 64  GQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL 123
           G+SKA+VA+++VL+F P  +ITA+H ++ +P +NVEFF+ F +V+N LDN  AR HVNR+
Sbjct: 70  GKSKAQVAKESVLRFCPSANITAYHDSIMNPDYNVEFFRNFQLVMNALDNRAARNHVNRM 129

Query: 124 CLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVW 183
           CLAAD+PL+ESGT G+LGQVTV  KG+TECYECQPKP  KT+P CTI +TPS+ +HCIVW
Sbjct: 130 CLAADIPLIESGTAGYLGQVTVIKKGQTECYECQPKPTQKTFPGCTIRNTPSEPIHCIVW 189

Query: 184 AKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQYGRRI--------- 234
           AK  LF +LFG+++ + +++  ++D  ++ +  D   R    D D   +R+         
Sbjct: 190 AK-YLFNQLFGEEDADQEVSPDTADPEAAWNPADAAARATASDQDGDIKRVSTKEWARST 248

Query: 235 -YDHVFGYNIEVASSN----------------EETWKNRNRPKPIYSADVMPENLTEQNG 277
            YD +  +N   A S                 ++ WK R  P P+   ++      EQ  
Sbjct: 249 GYDPIKLFNKVSALSQTSPYLFKDDIMYLLTMDKLWKKRKAPLPLEWEEINQLGSQEQ-- 306

Query: 278 NVAKNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIFLEALKLFFAK-REKEIG-NLSFD 335
                          +   GLK+ Q    +   +++F  +++   ++ +EK  G  L +D
Sbjct: 307 ---------------VIGSGLKD-QQVLGVQGYAQLFQHSVETLRSQLKEKGDGAELVWD 350

Query: 336 KDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKV 395
           KDD  A++FVTAA+N+R   F +++ S F+ K +AGNI+ A+ATTNA+IAGLIV+EA+K+
Sbjct: 351 KDDPPAMDFVTAASNLRMNVFSMNMKSRFDVKSMAGNIIPAIATTNAVIAGLIVLEALKI 410

Query: 396 LLKDTDKYRMTYCLEHIT-KKMLLMPVEPYEPNKSCYVCSETP-LSLEINTSRSKLRDFV 453
           L  D ++ R  +  +    +K LL+P     PN SCYVC+  P +++++N  ++ ++   
Sbjct: 411 LNSDFEQCRTIFLNKQPNPRKKLLVPCALDPPNASCYVCASKPEVTVKLNVHKTMVQALQ 470

Query: 454 EKIVKAKLGINFP 466
           +KI+K K G+  P
Sbjct: 471 DKILKEKFGMVAP 483

The heterodimer acts as a E1 ligase for sumo1, sumo2, and sumo3. It mediates ATP-dependent activation of sumo proteins followed by formation of a thioester bond between a sumo protein and a conserved active site cysteine residue on uba2/sae2.

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q642Q1|SAE2A_XENLA SUMO-activating enzyme subunit 2-A OS=Xenopus laevis GN=uba2-a PE=2 SV=1

 Score =  368 bits (944), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 203/480 (42%), Positives = 313/480 (65%), Gaps = 37/480 (7%)

Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
           EA+  +++L+VGAGGIGCELLK L L+GF ++ +ID+DTI+VSNLNRQFLF++ HVG+SK
Sbjct: 13  EAVSASRLLVVGAGGIGCELLKNLVLTGFTNLDVIDLDTIDVSNLNRQFLFQKKHVGRSK 72

Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA 127
           A+VA+++VL+F P  +ITA+H ++ +P +NVEFFKQF + +N LDN  AR HVNR+CLAA
Sbjct: 73  AQVAKESVLQFCPDANITAYHDSIMNPDYNVEFFKQFTMAMNALDNNAARNHVNRMCLAA 132

Query: 128 DVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDL 187
            +PL+ESGT G+LGQV+V  KG TECYECQPKP  KT+P CTI +TPS+ +HCIVWAK  
Sbjct: 133 GIPLIESGTAGYLGQVSVIKKGVTECYECQPKPTQKTFPGCTIRNTPSEPIHCIVWAK-Y 191

Query: 188 LFAKLFGDKNQENDLNVRSSD---------ASSSAHAEDVFVRRKDEDIDQYGR------ 232
           LF +LFG+++ + ++    +D         A+  A+A +V    K     Q+ +      
Sbjct: 192 LFNQLFGEEDADQEVAPDIADPEAAWDPTKAAERANASNVDGDIKRVSTKQWAKSTGYDP 251

Query: 233 -RIYDHVFGYNIEVASSNEETWKNRNRPKPIYSADVM-PENLTEQNGNVAKNCVVDTSSV 290
            ++++ +F  +I+   + +  W+ R  P P+  A +   EN +E         + + SS+
Sbjct: 252 IKLFNKLFRDDIKYLLTMDRLWRKRKPPIPLEWASLHNKENCSE---------IQNESSL 302

Query: 291 SAMASLGLKNPQDTWTLLESSRIFLEALKLFFAK-REKEIG-NLSFDKDDQLAVEFVTAA 348
                LGLK+ Q    +   +++F ++++    + REK  G  L +DKDD  A++FVTAA
Sbjct: 303 -----LGLKD-QKVLNVASYAQLFSKSVETLREQLREKGDGAELVWDKDDVPAMDFVTAA 356

Query: 349 ANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRMTYC 408
           AN+R   F +++ S F+ K +AGNI+ A+ATTNA+I+GLIV+E +K+L  +T++ R  + 
Sbjct: 357 ANLRMHIFSMNMKSKFDVKSMAGNIIPAIATTNAVISGLIVLEGLKILSGNTEQCRTVFL 416

Query: 409 LEHIT-KKMLLMPVEPYEPNKSCYVCSETP-LSLEINTSRSKLRDFVEKIVKAKLGINFP 466
            +    +K LL+P     PN SCYVC+  P +++++N  +  ++   +KI+K K  +  P
Sbjct: 417 NKQPNPRKKLLVPCSLDPPNPSCYVCAIKPEVTVKLNVHKVTVQMLQDKILKEKFAMVAP 476

The heterodimer acts as a E1 ligase for sumo1, sumo2, and sumo3. It mediates ATP-dependent activation of sumo proteins followed by formation of a thioester bond between a sumo protein and a conserved active site cysteine residue on uba2/sae2.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9NAN1|SAE2_CAEEL SUMO-activating enzyme subunit uba-2 OS=Caenorhabditis elegans GN=uba-2 PE=3 SV=3

 Score =  326 bits (836), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 193/525 (36%), Positives = 295/525 (56%), Gaps = 51/525 (9%)

Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
           E I  +K+L++GAGGIGCELLK LA++GF+ +H+ID+DTI++SNLNRQFLFR+ HV  SK
Sbjct: 9   EKIVQSKILVIGAGGIGCELLKNLAVTGFRKVHVIDLDTIDISNLNRQFLFRKEHVSSSK 68

Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA 127
           A  A   V +F PQ+ +T  H ++ + K+N+EFF+ +++VLN LDN  AR +VNR+C AA
Sbjct: 69  AATATQVVKQFCPQIELTFDHDSIFEKKYNMEFFQAYDIVLNALDNRAARNYVNRMCHAA 128

Query: 128 DVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPK-TYPVCTITSTPSKFVHCIVWAKD 186
           + PL++SG+ G+ GQV+V ++GKTECYEC  KP  + TYP CTI +TPS+ +HC VWAK 
Sbjct: 129 NRPLIDSGSGGYFGQVSVIMRGKTECYECVDKPVQQTTYPGCTIRNTPSEHIHCTVWAKH 188

Query: 187 LLFAKLFGDKNQENDLNVRSSDASSSAHAE----------------DVFVRRKDEDIDQY 230
            +F +LFG+ + ++D++    DA    + E                 V  R+  E +D  
Sbjct: 189 -VFNQLFGEVDIDDDVS-PDMDAVDPDNTEAVTTEKEKEAMKEEPAPVGTRQWAESVDYD 246

Query: 231 GRRIYDHVFGYNIEVASSNEETWKNRNRPKPI-----YSADVMPENLTEQNGNVAKNCVV 285
             +++D +F ++IE     E  WK R RP P+      S    P++L +   +       
Sbjct: 247 AAKVFDKLFLHDIEYLCKMEHLWKQRKRPSPLEFHTASSTGGEPQSLCDAQRD------- 299

Query: 286 DTSSVSAMASLGLKNPQDTWTLLESSRIFLEALKLFFAK-REKEIGNLSFDKDDQLAVEF 344
           DTS                WTL   +++F   ++    + R +    L+FDKD  + + F
Sbjct: 300 DTS---------------IWTLSTCAKVFSTCIQELLEQIRAEPDVKLAFDKDHAIIMSF 344

Query: 345 VTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYR 404
           V A ANIRA  FGI + S F+ K +AGNI+ A+A+TNAI+AG+IV EA++V+   T    
Sbjct: 345 VAACANIRAKIFGIPMKSQFDIKAMAGNIIPAIASTNAIVAGIIVTEAVRVIEGSTVICN 404

Query: 405 MTYCLEHITKKMLLMPVEPYE-PNKSCYVCSET-PLSLEINTSRSKLRDFVEKIVKAKLG 462
            +        +  +   +    PN  C+VCSE   + + +N     +    EK++K KL 
Sbjct: 405 SSIATTQSNPRGRIFGGDATNPPNPRCFVCSEKREVFIYVNPDTMTVGGLCEKVLKQKLN 464

Query: 463 INFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVKIQASSVTLC 507
           +  P +M  +     V  D D  ++      L +V I+  ++  C
Sbjct: 465 MLAPDVMDSATSRIIVSSDGDTDDL--LPKKLAEVSIEDGAILSC 507

The dimeric enzyme acts as a E1 ligase for smo-1. It mediates ATP-dependent activation of smo-1 and formation of a thioester with a conserved cysteine residue on uba-2.

Caenorhabditis elegans (taxid: 6239)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	563
449464696	641	PREDICTED: SUMO-activating enzyme subuni	0.934	0.820	0.796	0.0
449517032	641	PREDICTED: LOW QUALITY PROTEIN: SUMO-act	0.934	0.820	0.795	0.0
225428380	634	PREDICTED: SUMO-activating enzyme subuni	0.882	0.783	0.853	0.0
255543783	644	ubiquitin-activating enzyme E1b, putativ	0.882	0.771	0.842	0.0
30681414	625	SUMO-activating enzyme subunit 2 [Arabid	0.879	0.792	0.813	0.0
42570865	700	SUMO-activating enzyme subunit 2 [Arabid	0.941	0.757	0.769	0.0
356544157	636	PREDICTED: SUMO-activating enzyme subuni	0.902	0.798	0.804	0.0
356546382	638	PREDICTED: SUMO-activating enzyme subuni	0.902	0.796	0.808	0.0
297744435	618	unnamed protein product [Vitis vinifera]	0.854	0.778	0.861	0.0
334184353	628	SUMO-activating enzyme subunit 2 [Arabid	0.879	0.788	0.808	0.0

>gi|449464696|ref|XP_004150065.1| PREDICTED: SUMO-activating enzyme subunit 2-like [Cucumis sativus]

 Score =  879 bits (2271), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/532 (79%), Positives = 468/532 (87%), Gaps = 6/532 (1%)

Query: 1   MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQ 60
           M S++QL  IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFR+
Sbjct: 1   MASQQQLSVIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRK 60

Query: 61  SHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHV 120
           SHVG SKAKVARDAVL+FRPQ+SIT++HANVK+ +FNV+F KQF+VVLNGLDNLDARRHV
Sbjct: 61  SHVGLSKAKVARDAVLRFRPQVSITSYHANVKNQEFNVDFLKQFSVVLNGLDNLDARRHV 120

Query: 121 NRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHC 180
           NRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHC
Sbjct: 121 NRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHC 180

Query: 181 IVWAKDLLFAKLFGDKNQENDLNVRSSD-ASSSAHAEDVFVRRKDEDIDQYGRRIYDHVF 239
           IVWAKDLLF KLFGDKNQENDLNVRSSD ASSS HAED+F   KDE I+ YGRR++DHVF
Sbjct: 181 IVWAKDLLFTKLFGDKNQENDLNVRSSDPASSSDHAEDIFQLNKDETIEHYGRRVFDHVF 240

Query: 240 GYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSS-VSAMASLGL 298
           GYNIEVA SNE+TWKNRN+P+PIYS D++PE  T+QNGN  KNC  D  S +SAM SLG+
Sbjct: 241 GYNIEVALSNEDTWKNRNKPRPIYSRDILPEEPTKQNGNTDKNCATDDQSLISAMTSLGI 300

Query: 299 KNPQDTWTLLESSRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGI 358
           KNPQ+ W+L+E+SRIF+EA+KLFF KREK++GNL+FDKDDQLAVEFVTAAANIRA SFGI
Sbjct: 301 KNPQEIWSLMENSRIFIEAIKLFFTKREKDVGNLAFDKDDQLAVEFVTAAANIRAESFGI 360

Query: 359 SLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRMTYCLEHITKKMLL 418
            +HSLFE+KGIAGNIVHAVATTNAIIAGLIVIEAIKVL  D + YRMTYCLEH ++KMLL
Sbjct: 361 PMHSLFESKGIAGNIVHAVATTNAIIAGLIVIEAIKVLQNDANNYRMTYCLEHPSRKMLL 420

Query: 419 MPVEPYEPNKSCYVCSETPLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEV 478
           MPVEP+EPNKSCYVCSETPLSLEINT  +KLRDFVEKIVKAKLG+NFPLIMHG+ LLYEV
Sbjct: 421 MPVEPFEPNKSCYVCSETPLSLEINTHHAKLRDFVEKIVKAKLGMNFPLIMHGAALLYEV 480

Query: 479 GDDLDEVEVANYAANLEKVKIQASSVTLCSSPPDFCCSCNDADVLLFCFFNI 530
           GDDLDE  VANY ANLEKV  +  S  +  +      S  D    L C  NI
Sbjct: 481 GDDLDEDMVANYTANLEKVLSELPSPVVSGT----ILSVEDLQQELSCSINI 528

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517032|ref|XP_004165550.1| PREDICTED: LOW QUALITY PROTEIN: SUMO-activating enzyme subunit 2-like [Cucumis sativus]

 Score =  877 bits (2267), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/532 (79%), Positives = 467/532 (87%), Gaps = 6/532 (1%)

Query: 1   MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQ 60
           M S++QL  IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFR+
Sbjct: 1   MASQQQLSVIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRK 60

Query: 61  SHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHV 120
           SHVG SKAKVARDAVL+FRPQ+SIT++HANVK+ +FNV+F KQF+VVLNGLDNLDARRHV
Sbjct: 61  SHVGLSKAKVARDAVLRFRPQVSITSYHANVKNQEFNVDFLKQFSVVLNGLDNLDARRHV 120

Query: 121 NRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHC 180
           NRLCLAADVPLVESGTTGFLGQVTVHV GKTECYECQPKPAPKTYPVCTITSTPSKFVHC
Sbjct: 121 NRLCLAADVPLVESGTTGFLGQVTVHVXGKTECYECQPKPAPKTYPVCTITSTPSKFVHC 180

Query: 181 IVWAKDLLFAKLFGDKNQENDLNVRSSD-ASSSAHAEDVFVRRKDEDIDQYGRRIYDHVF 239
           IVWAKDLLF KLFGDKNQENDLNVRSSD ASSS HAED+F   KDE I+ YGRR++DHVF
Sbjct: 181 IVWAKDLLFTKLFGDKNQENDLNVRSSDPASSSDHAEDIFQLNKDETIEHYGRRVFDHVF 240

Query: 240 GYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSS-VSAMASLGL 298
           GYNIEVA SNE+TWKNRN+P+PIYS D++PE  T+QNGN  KNC  D  S +SAM SLG+
Sbjct: 241 GYNIEVALSNEDTWKNRNKPRPIYSRDILPEEPTKQNGNTDKNCATDDQSLISAMTSLGI 300

Query: 299 KNPQDTWTLLESSRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGI 358
           KNPQ+ W+L+E+SRIF+EA+KLFF KREK++GNL+FDKDDQLAVEFVTAAANIRA SFGI
Sbjct: 301 KNPQEIWSLMENSRIFIEAIKLFFTKREKDVGNLAFDKDDQLAVEFVTAAANIRAESFGI 360

Query: 359 SLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRMTYCLEHITKKMLL 418
            +HSLFE+KGIAGNIVHAVATTNAIIAGLIVIEAIKVL  D + YRMTYCLEH ++KMLL
Sbjct: 361 PMHSLFESKGIAGNIVHAVATTNAIIAGLIVIEAIKVLQNDANNYRMTYCLEHPSRKMLL 420

Query: 419 MPVEPYEPNKSCYVCSETPLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEV 478
           MPVEP+EPNKSCYVCSETPLSLEINT  +KLRDFVEKIVKAKLG+NFPLIMHG+ LLYEV
Sbjct: 421 MPVEPFEPNKSCYVCSETPLSLEINTHHAKLRDFVEKIVKAKLGMNFPLIMHGAALLYEV 480

Query: 479 GDDLDEVEVANYAANLEKVKIQASSVTLCSSPPDFCCSCNDADVLLFCFFNI 530
           GDDLDE  VANY ANLEKV  +  S  +  +      S  D    L C  NI
Sbjct: 481 GDDLDEDMVANYTANLEKVLSELPSPVVSGT----ILSVEDLQQELSCSINI 528

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428380|ref|XP_002283529.1| PREDICTED: SUMO-activating enzyme subunit 2-like [Vitis vinifera]

 Score =  868 bits (2242), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/499 (85%), Positives = 454/499 (90%), Gaps = 2/499 (0%)

Query: 1   MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQ 60
           M S ++  AIKGAKVLMVGAGGIGCELLKTLALSGF+DIHIIDMDTIEVSNLNRQFLFRQ
Sbjct: 1   MASHQRSPAIKGAKVLMVGAGGIGCELLKTLALSGFEDIHIIDMDTIEVSNLNRQFLFRQ 60

Query: 61  SHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHV 120
           SHVGQSKAKVARDAVL+FRP +SIT++HANVKDP FNV+FFKQFNVVLNGLDNLDARRHV
Sbjct: 61  SHVGQSKAKVARDAVLRFRPHISITSYHANVKDPDFNVDFFKQFNVVLNGLDNLDARRHV 120

Query: 121 NRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHC 180
           NRLCLA+DVPLVESGTTGFLGQVTVHVKGKTECYECQPKP PKTYPVCTITSTPSKFVHC
Sbjct: 121 NRLCLASDVPLVESGTTGFLGQVTVHVKGKTECYECQPKPTPKTYPVCTITSTPSKFVHC 180

Query: 181 IVWAKDLLFAKLFGDKNQENDL-NVRSSDASSSAHAEDVFVRRKDEDIDQYGRRIYDHVF 239
           IVWAKDLLFAKLFGDKNQENDL    S+ ASSS  AEDVF R+ DE ID+Y +RIYDHVF
Sbjct: 181 IVWAKDLLFAKLFGDKNQENDLNARSSNAASSSQQAEDVFERQNDEGIDEYAKRIYDHVF 240

Query: 240 GYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTS-SVSAMASLGL 298
           GYNI VA SNEETWKNRNRPKP+YS DV PE  ++QNGN+ KNC  D   SVSAMASLGL
Sbjct: 241 GYNIGVALSNEETWKNRNRPKPLYSRDVFPEEPSQQNGNMDKNCATDDPLSVSAMASLGL 300

Query: 299 KNPQDTWTLLESSRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGI 358
           KNPQD W+LLE+SRIFLEALKLFF KREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGI
Sbjct: 301 KNPQDIWSLLENSRIFLEALKLFFGKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGI 360

Query: 359 SLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRMTYCLEHITKKMLL 418
            LHSLFEAKGIAGNIVHAVATTNA+IAGLIVIEAIKVL +D + YRMTYCLEH ++KMLL
Sbjct: 361 PLHSLFEAKGIAGNIVHAVATTNAVIAGLIVIEAIKVLQRDANNYRMTYCLEHPSRKMLL 420

Query: 419 MPVEPYEPNKSCYVCSETPLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEV 478
           MPVEP+EPNKSCYVCSETPL LE+NT RSKLRDFVEKIVKAKLG+N PLIMHG  LLYEV
Sbjct: 421 MPVEPFEPNKSCYVCSETPLLLEVNTHRSKLRDFVEKIVKAKLGMNCPLIMHGPALLYEV 480

Query: 479 GDDLDEVEVANYAANLEKV 497
           GDDLD+   ANYAANLEKV
Sbjct: 481 GDDLDKDMAANYAANLEKV 499

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543783|ref|XP_002512954.1| ubiquitin-activating enzyme E1b, putative [Ricinus communis] gi|223547965|gb|EEF49457.1| ubiquitin-activating enzyme E1b, putative [Ricinus communis]

 Score =  865 bits (2235), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/500 (84%), Positives = 453/500 (90%), Gaps = 3/500 (0%)

Query: 9   AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKA 68
           A+KGAKVLMVGAGGIGCELLKTLALSGF+DIHIIDMDTIEVSNLNRQFLFR+SHVGQSKA
Sbjct: 9   AVKGAKVLMVGAGGIGCELLKTLALSGFEDIHIIDMDTIEVSNLNRQFLFRKSHVGQSKA 68

Query: 69  KVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAAD 128
           KVARDAVL+F+P + IT++HANVKD  FNV+FFKQF+ VLNGLDNLDARRHVNRLCLAA+
Sbjct: 69  KVARDAVLRFKPHIRITSYHANVKDSDFNVDFFKQFSAVLNGLDNLDARRHVNRLCLAAE 128

Query: 129 VPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLL 188
           VPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPK+YPVCTITSTPSKFVHCIVWAKDLL
Sbjct: 129 VPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKSYPVCTITSTPSKFVHCIVWAKDLL 188

Query: 189 FAKLFGDKNQENDLNVRSSDAS-SSAHAEDVFVRRKDEDIDQYGRRIYDHVFGYNIEVAS 247
           FAKLFGDKNQENDLNVRSSDAS SS HAEDVF R  +EDI+QYGRRIYDHVFGYNIE A 
Sbjct: 189 FAKLFGDKNQENDLNVRSSDASNSSEHAEDVFERGNNEDIEQYGRRIYDHVFGYNIETAL 248

Query: 248 SNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVV-DTSSVSAMASLGLKNPQDTWT 306
           SNEETWKNRNRP+PIYS DV+P+  ++QNG+V K     D SSVSAMASLGLKNPQ+ W+
Sbjct: 249 SNEETWKNRNRPRPIYSRDVLPDRPSQQNGSVDKGSASHDPSSVSAMASLGLKNPQEIWS 308

Query: 307 LLESSRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEA 366
           L E+SR+F EALKLFF  REKEIGNLSFDKDDQLAVE VTAAANIRAASFGI LHSLFEA
Sbjct: 309 LTENSRVFFEALKLFFVSREKEIGNLSFDKDDQLAVEIVTAAANIRAASFGIPLHSLFEA 368

Query: 367 KGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRMTYCLEHITKKMLLMPVEPYEP 426
           KGIAGNIVHAVATTNAIIAGLIVIEAIKVL KD D YRMTYCLEH ++KMLLMPVEP+EP
Sbjct: 369 KGIAGNIVHAVATTNAIIAGLIVIEAIKVLEKDADNYRMTYCLEHPSRKMLLMPVEPFEP 428

Query: 427 NKSCYVCSETPLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVE 486
           NKSC VCS++PLSLEIN  RSKLRDFVEKIVKAKLG+N PLIMHG  LLYEVGDDL+E  
Sbjct: 429 NKSCCVCSKSPLSLEINIHRSKLRDFVEKIVKAKLGMNSPLIMHGPTLLYEVGDDLEEDM 488

Query: 487 VANYAANLEKVKIQ-ASSVT 505
           VANY ANLEK   +  SSVT
Sbjct: 489 VANYNANLEKALSELPSSVT 508

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30681414|ref|NP_179742.2| SUMO-activating enzyme subunit 2 [Arabidopsis thaliana] gi|26450535|dbj|BAC42380.1| putative ubiquitin activating enzyme [Arabidopsis thaliana] gi|208879522|gb|ACI31306.1| At2g21470 [Arabidopsis thaliana] gi|330252087|gb|AEC07181.1| SUMO-activating enzyme subunit 2 [Arabidopsis thaliana]

 Score =  852 bits (2202), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/499 (81%), Positives = 455/499 (91%), Gaps = 4/499 (0%)

Query: 1   MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQ 60
           M +++Q  AIKGAKVLMVGAGGIGCELLKTLALSGF+DIHIIDMDTIEVSNLNRQFLFR+
Sbjct: 1   MATQQQQSAIKGAKVLMVGAGGIGCELLKTLALSGFEDIHIIDMDTIEVSNLNRQFLFRR 60

Query: 61  SHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHV 120
           SHVGQSKAKVARDAVL+FRP ++I ++HANVK+P+F+V+FFKQF+VVLNGLDNLDARRHV
Sbjct: 61  SHVGQSKAKVARDAVLRFRPNINIRSYHANVKNPEFDVDFFKQFDVVLNGLDNLDARRHV 120

Query: 121 NRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHC 180
           NRLCLAADVPLVESGTTGFLGQVTVH+KGKTECYECQ KPAPKTYPVCTITSTP+KFVHC
Sbjct: 121 NRLCLAADVPLVESGTTGFLGQVTVHIKGKTECYECQTKPAPKTYPVCTITSTPTKFVHC 180

Query: 181 IVWAKDLLFAKLFGDKNQENDLNVRSSD-ASSSAHAEDVFVRRKDEDIDQYGRRIYDHVF 239
           IVWAKDLLFAKLFGDKNQ+NDLNVRS++ ASSS   EDVF R +DEDI+QYGR+IYDHVF
Sbjct: 181 IVWAKDLLFAKLFGDKNQDNDLNVRSNNSASSSKETEDVFERSEDEDIEQYGRKIYDHVF 240

Query: 240 GYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSS--VSAMASLG 297
           G NIE A SNEETWKNR RP+PIYS DV+PE+LT+QNG+  +NC V      VSAM SLG
Sbjct: 241 GSNIEAALSNEETWKNRRRPRPIYSKDVLPESLTQQNGST-QNCSVTDGDLMVSAMPSLG 299

Query: 298 LKNPQDTWTLLESSRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFG 357
           LKNPQ+ W L ++S +F+EALKLFFAKR+KEIG+L+FDKDDQLAVEFVTAAANIRA SFG
Sbjct: 300 LKNPQELWGLTQNSLVFIEALKLFFAKRKKEIGHLTFDKDDQLAVEFVTAAANIRAESFG 359

Query: 358 ISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRMTYCLEHITKKML 417
           I LHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVL KD DK+RMTYCLEH +KK+L
Sbjct: 360 IPLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLKKDVDKFRMTYCLEHPSKKLL 419

Query: 418 LMPVEPYEPNKSCYVCSETPLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYE 477
           LMP+EPYEPN +CYVCSETPL LEINT +SKLRD V+KIVK KLG+N PLIMHG++LLYE
Sbjct: 420 LMPIEPYEPNPACYVCSETPLVLEINTRKSKLRDLVDKIVKTKLGMNLPLIMHGNSLLYE 479

Query: 478 VGDDLDEVEVANYAANLEK 496
           VGDDLD++ VANY ANLEK
Sbjct: 480 VGDDLDDIMVANYNANLEK 498

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42570865|ref|NP_973506.1| SUMO-activating enzyme subunit 2 [Arabidopsis thaliana] gi|75265963|sp|Q9SJT1.1|SAE2_ARATH RecName: Full=SUMO-activating enzyme subunit 2; AltName: Full=Protein EMBRYO DEFECTIVE 2764; AltName: Full=Ubiquitin-like 1-activating enzyme E1B gi|4567278|gb|AAD23691.1| putative ubiquitin activating enzyme [Arabidopsis thaliana] gi|330252088|gb|AEC07182.1| SUMO-activating enzyme subunit 2 [Arabidopsis thaliana]

 Score =  852 bits (2201), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/538 (76%), Positives = 467/538 (86%), Gaps = 8/538 (1%)

Query: 1   MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQ 60
           M +++Q  AIKGAKVLMVGAGGIGCELLKTLALSGF+DIHIIDMDTIEVSNLNRQFLFR+
Sbjct: 1   MATQQQQSAIKGAKVLMVGAGGIGCELLKTLALSGFEDIHIIDMDTIEVSNLNRQFLFRR 60

Query: 61  SHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHV 120
           SHVGQSKAKVARDAVL+FRP ++I ++HANVK+P+F+V+FFKQF+VVLNGLDNLDARRHV
Sbjct: 61  SHVGQSKAKVARDAVLRFRPNINIRSYHANVKNPEFDVDFFKQFDVVLNGLDNLDARRHV 120

Query: 121 NRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHC 180
           NRLCLAADVPLVESGTTGFLGQVTVH+KGKTECYECQ KPAPKTYPVCTITSTP+KFVHC
Sbjct: 121 NRLCLAADVPLVESGTTGFLGQVTVHIKGKTECYECQTKPAPKTYPVCTITSTPTKFVHC 180

Query: 181 IVWAKDLLFAKLFGDKNQENDLNVRSSD-ASSSAHAEDVFVRRKDEDIDQYGRRIYDHVF 239
           IVWAKDLLFAKLFGDKNQ+NDLNVRS++ ASSS   EDVF R +DEDI+QYGR+IYDHVF
Sbjct: 181 IVWAKDLLFAKLFGDKNQDNDLNVRSNNSASSSKETEDVFERSEDEDIEQYGRKIYDHVF 240

Query: 240 GYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSS--VSAMASLG 297
           G NIE A SNEETWKNR RP+PIYS DV+PE+LT+QNG+  +NC V      VSAM SLG
Sbjct: 241 GSNIEAALSNEETWKNRRRPRPIYSKDVLPESLTQQNGS-TQNCSVTDGDLMVSAMPSLG 299

Query: 298 LKNPQDTWTLLESSRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFG 357
           LKNPQ+ W L ++S +F+EALKLFFAKR+KEIG+L+FDKDDQLAVEFVTAAANIRA SFG
Sbjct: 300 LKNPQELWGLTQNSLVFIEALKLFFAKRKKEIGHLTFDKDDQLAVEFVTAAANIRAESFG 359

Query: 358 ISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRMTYCLEHITKKML 417
           I LHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVL KD DK+RMTYCLEH +KK+L
Sbjct: 360 IPLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLKKDVDKFRMTYCLEHPSKKLL 419

Query: 418 LMPVEPYEPNKSCYVCSETPLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYE 477
           LMP+EPYEPN +CYVCSETPL LEINT +SKLRD V+KIVK KLG+N PLIMHG++LLYE
Sbjct: 420 LMPIEPYEPNPACYVCSETPLVLEINTRKSKLRDLVDKIVKTKLGMNLPLIMHGNSLLYE 479

Query: 478 VGDDLDEVEVANYAANLEKVKIQASSVTLCSSPPDFCCSCNDADVLLFCFFNIFSLYF 535
           VGDDLD++ VANY ANLEK   +  S  L  S      +  D    L C  N+   +F
Sbjct: 480 VGDDLDDIMVANYNANLEKYLSELPSPILNGS----ILTVEDLQQELSCKINVKHRFF 533

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544157|ref|XP_003540521.1| PREDICTED: SUMO-activating enzyme subunit 2-like [Glycine max]

 Score =  852 bits (2200), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/517 (80%), Positives = 452/517 (87%), Gaps = 9/517 (1%)

Query: 10  IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAK 69
           IK AKVLMVGAGGIGCELLKTLALSGF DIHIIDMDTIEVSNLNRQFLFRQ HVGQSKAK
Sbjct: 9   IKDAKVLMVGAGGIGCELLKTLALSGFPDIHIIDMDTIEVSNLNRQFLFRQFHVGQSKAK 68

Query: 70  VARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADV 129
           VARDAVLKFRP ++IT +HANVKDP+FNV+FFKQFNVVLNGLDNLDARRHVNRLCLAA+V
Sbjct: 69  VARDAVLKFRPHINITPYHANVKDPEFNVDFFKQFNVVLNGLDNLDARRHVNRLCLAANV 128

Query: 130 PLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLF 189
           PLVESGTTGFLGQVTVHVKG+TECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLF
Sbjct: 129 PLVESGTTGFLGQVTVHVKGRTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLF 188

Query: 190 AKLFGDKNQENDLNVRSSDA-SSSAHAEDVFVRRKDEDIDQYGRRIYDHVFGYNIEVASS 248
           AKLFGDKNQ+NDLNVRSSDA SSS + EDVF RRKDEDIDQYGR+I+DHVFGYNIE+A S
Sbjct: 189 AKLFGDKNQDNDLNVRSSDAASSSKNVEDVFERRKDEDIDQYGRKIFDHVFGYNIELALS 248

Query: 249 NEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLL 308
           NEETWKNRNRPKPIYS D++ +   +QNGN+ K    D  SVSAMASLG+KNPQD W+L 
Sbjct: 249 NEETWKNRNRPKPIYSKDILSDEPAQQNGNLEKKYESDELSVSAMASLGMKNPQDIWSLK 308

Query: 309 ESSRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKG 368
           E+SRIFLEA +LFF KREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGI L +LFEAKG
Sbjct: 309 ENSRIFLEAFRLFFTKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGIPLQNLFEAKG 368

Query: 369 IAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRMTYCLEHITKKMLLMPVEPYEPNK 428
           IAGNIVHAVATTNA+IAGLIVIEAIKVL  D   YRMTYCLEH  + MLLMPVEP+EPNK
Sbjct: 369 IAGNIVHAVATTNAVIAGLIVIEAIKVLKNDIKNYRMTYCLEHPARNMLLMPVEPFEPNK 428

Query: 429 SCYVCSETPLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVA 488
           SCYVCSETPLSLEINT+RSKL+D VEKIVKAKLG+N PLIM  SNLLYE GD  D++ +A
Sbjct: 429 SCYVCSETPLSLEINTNRSKLKDLVEKIVKAKLGMNLPLIMCASNLLYEAGDVEDDM-IA 487

Query: 489 NYAANLEKVKIQASS-------VTLCSSPPDFCCSCN 518
            Y ANLEK   +  S       +T+     +F C+ N
Sbjct: 488 IYEANLEKALAELPSPVTGGTMLTVEDMQQEFVCNIN 524

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546382|ref|XP_003541605.1| PREDICTED: SUMO-activating enzyme subunit 2-like [Glycine max]

 Score =  850 bits (2197), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/517 (80%), Positives = 451/517 (87%), Gaps = 9/517 (1%)

Query: 10  IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAK 69
           IK AKVLMVGAGGIGCELLKTLALSGF DIHIIDMDTIEVSNLNRQFLFRQ HVGQSKAK
Sbjct: 11  IKDAKVLMVGAGGIGCELLKTLALSGFPDIHIIDMDTIEVSNLNRQFLFRQFHVGQSKAK 70

Query: 70  VARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADV 129
           VARDAVLKFRP ++IT +HANVKDP+FNV+FFKQFNVVLNGLDNLDARRHVNRLCLAA+V
Sbjct: 71  VARDAVLKFRPHINITPYHANVKDPEFNVDFFKQFNVVLNGLDNLDARRHVNRLCLAANV 130

Query: 130 PLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLF 189
           PLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLF
Sbjct: 131 PLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLF 190

Query: 190 AKLFGDKNQENDLNVRSSDA-SSSAHAEDVFVRRKDEDIDQYGRRIYDHVFGYNIEVASS 248
           AKLFGDKNQ+NDLNVRSSDA SSS + EDVF RRKDEDIDQYGR+I+DHVFGYNIE+A S
Sbjct: 191 AKLFGDKNQDNDLNVRSSDAASSSKNVEDVFERRKDEDIDQYGRKIFDHVFGYNIELALS 250

Query: 249 NEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLL 308
           NEETWKNRNRPKPIYS DV+ +   +QNGN+ K    D   VSAMASLG+KNPQD W+L 
Sbjct: 251 NEETWKNRNRPKPIYSKDVLSDEPAQQNGNLEKKYESDELPVSAMASLGMKNPQDIWSLK 310

Query: 309 ESSRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKG 368
           E+SRIFLEA +LFF KREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGI L +LFEAKG
Sbjct: 311 ENSRIFLEAFRLFFTKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGIPLQNLFEAKG 370

Query: 369 IAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRMTYCLEHITKKMLLMPVEPYEPNK 428
           IAGNIVHAVATTNA+IAGLIVIEAIKVL  D   YRMTYCLEH  + MLLMPVEP+EPNK
Sbjct: 371 IAGNIVHAVATTNAVIAGLIVIEAIKVLNNDIKNYRMTYCLEHPARNMLLMPVEPFEPNK 430

Query: 429 SCYVCSETPLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVA 488
           SCYVCSETPLSLEINT+RSKL+D VEKIVKAKLG+N PLIM  SNLLYE GD  D++ VA
Sbjct: 431 SCYVCSETPLSLEINTNRSKLKDLVEKIVKAKLGMNLPLIMCASNLLYEAGDVEDDM-VA 489

Query: 489 NYAANLEKVKIQASS-------VTLCSSPPDFCCSCN 518
            Y ANLEK   +  S       +T+     +F C+ N
Sbjct: 490 IYEANLEKALAELPSPVTGGTMLTVEDMQQEFVCNIN 526

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744435|emb|CBI37697.3| unnamed protein product [Vitis vinifera]

 Score =  850 bits (2196), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/483 (86%), Positives = 442/483 (91%), Gaps = 2/483 (0%)

Query: 17  MVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVL 76
           MVGAGGIGCELLKTLALSGF+DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVL
Sbjct: 1   MVGAGGIGCELLKTLALSGFEDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVL 60

Query: 77  KFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGT 136
           +FRP +SIT++HANVKDP FNV+FFKQFNVVLNGLDNLDARRHVNRLCLA+DVPLVESGT
Sbjct: 61  RFRPHISITSYHANVKDPDFNVDFFKQFNVVLNGLDNLDARRHVNRLCLASDVPLVESGT 120

Query: 137 TGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDK 196
           TGFLGQVTVHVKGKTECYECQPKP PKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDK
Sbjct: 121 TGFLGQVTVHVKGKTECYECQPKPTPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDK 180

Query: 197 NQENDL-NVRSSDASSSAHAEDVFVRRKDEDIDQYGRRIYDHVFGYNIEVASSNEETWKN 255
           NQENDL    S+ ASSS  AEDVF R+ DE ID+Y +RIYDHVFGYNI VA SNEETWKN
Sbjct: 181 NQENDLNARSSNAASSSQQAEDVFERQNDEGIDEYAKRIYDHVFGYNIGVALSNEETWKN 240

Query: 256 RNRPKPIYSADVMPENLTEQNGNVAKNCVVDTS-SVSAMASLGLKNPQDTWTLLESSRIF 314
           RNRPKP+YS DV PE  ++QNGN+ KNC  D   SVSAMASLGLKNPQD W+LLE+SRIF
Sbjct: 241 RNRPKPLYSRDVFPEEPSQQNGNMDKNCATDDPLSVSAMASLGLKNPQDIWSLLENSRIF 300

Query: 315 LEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIV 374
           LEALKLFF KREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGI LHSLFEAKGIAGNIV
Sbjct: 301 LEALKLFFGKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGIPLHSLFEAKGIAGNIV 360

Query: 375 HAVATTNAIIAGLIVIEAIKVLLKDTDKYRMTYCLEHITKKMLLMPVEPYEPNKSCYVCS 434
           HAVATTNA+IAGLIVIEAIKVL +D + YRMTYCLEH ++KMLLMPVEP+EPNKSCYVCS
Sbjct: 361 HAVATTNAVIAGLIVIEAIKVLQRDANNYRMTYCLEHPSRKMLLMPVEPFEPNKSCYVCS 420

Query: 435 ETPLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANL 494
           ETPL LE+NT RSKLRDFVEKIVKAKLG+N PLIMHG  LLYEVGDDLD+   ANYAANL
Sbjct: 421 ETPLLLEVNTHRSKLRDFVEKIVKAKLGMNCPLIMHGPALLYEVGDDLDKDMAANYAANL 480

Query: 495 EKV 497
           EKV
Sbjct: 481 EKV 483

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334184353|ref|NP_001189570.1| SUMO-activating enzyme subunit 2 [Arabidopsis thaliana] gi|330252089|gb|AEC07183.1| SUMO-activating enzyme subunit 2 [Arabidopsis thaliana]

 Score =  847 bits (2188), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/502 (80%), Positives = 455/502 (90%), Gaps = 7/502 (1%)

Query: 1   MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQ 60
           M +++Q  AIKGAKVLMVGAGGIGCELLKTLALSGF+DIHIIDMDTIEVSNLNRQFLFR+
Sbjct: 1   MATQQQQSAIKGAKVLMVGAGGIGCELLKTLALSGFEDIHIIDMDTIEVSNLNRQFLFRR 60

Query: 61  SHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHV 120
           SHVGQSKAKVARDAVL+FRP ++I ++HANVK+P+F+V+FFKQF+VVLNGLDNLDARRHV
Sbjct: 61  SHVGQSKAKVARDAVLRFRPNINIRSYHANVKNPEFDVDFFKQFDVVLNGLDNLDARRHV 120

Query: 121 NRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHC 180
           NRLCLAADVPLVESGTTGFLGQVTVH+KGKTECYECQ KPAPKTYPVCTITSTP+KFVHC
Sbjct: 121 NRLCLAADVPLVESGTTGFLGQVTVHIKGKTECYECQTKPAPKTYPVCTITSTPTKFVHC 180

Query: 181 IVWAKDLLFAKLFGDKNQENDLNVRSSD-ASSSAHAEDVFVRRKDEDIDQYGRRIYDHVF 239
           IVWAKDLLFAKLFGDKNQ+NDLNVRS++ ASSS   EDVF R +DEDI+QYGR+IYDHVF
Sbjct: 181 IVWAKDLLFAKLFGDKNQDNDLNVRSNNSASSSKETEDVFERSEDEDIEQYGRKIYDHVF 240

Query: 240 GYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSS--VSAMASLG 297
           G NIE A SNEETWKNR RP+PIYS DV+PE+LT+QNG+  +NC V      VSAM SLG
Sbjct: 241 GSNIEAALSNEETWKNRRRPRPIYSKDVLPESLTQQNGST-QNCSVTDGDLMVSAMPSLG 299

Query: 298 LKNPQDTWTLLESSRIFLEALKLFFAKREK---EIGNLSFDKDDQLAVEFVTAAANIRAA 354
           LKNPQ+ W L ++S +F+EALKLFFAKR+K   EIG+L+FDKDDQLAVEFVTAAANIRA 
Sbjct: 300 LKNPQELWGLTQNSLVFIEALKLFFAKRKKVCVEIGHLTFDKDDQLAVEFVTAAANIRAE 359

Query: 355 SFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRMTYCLEHITK 414
           SFGI LHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVL KD DK+RMTYCLEH +K
Sbjct: 360 SFGIPLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLKKDVDKFRMTYCLEHPSK 419

Query: 415 KMLLMPVEPYEPNKSCYVCSETPLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNL 474
           K+LLMP+EPYEPN +CYVCSETPL LEINT +SKLRD V+KIVK KLG+N PLIMHG++L
Sbjct: 420 KLLLMPIEPYEPNPACYVCSETPLVLEINTRKSKLRDLVDKIVKTKLGMNLPLIMHGNSL 479

Query: 475 LYEVGDDLDEVEVANYAANLEK 496
           LYEVGDDLD++ VANY ANLEK
Sbjct: 480 LYEVGDDLDDIMVANYNANLEK 501

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	563
TAIR|locus:2050069	700	SAE2 "SUMO-activating enzyme 2	0.902	0.725	0.789	5.7e-217
DICTYBASE|DDB_G0286919	661	uba2 "sumo-activating enzyme s	0.865	0.736	0.408	1.6e-102
ASPGD|ASPL0000050249	610	AN2450 [Emericella nidulans (t	0.769	0.709	0.438	5.4e-94
ZFIN|ZDB-GENE-040426-2681	651	uba2 "ubiquitin-like modifier	0.813	0.703	0.417	1e-93
UNIPROTKB|Q9UBT2	640	UBA2 "SUMO-activating enzyme s	0.834	0.734	0.422	1.3e-93
MGI|MGI:1858313	638	Uba2 "ubiquitin-like modifier	0.792	0.699	0.435	3.4e-93
UNIPROTKB|E2R837	640	UBA2 "Uncharacterized protein"	0.833	0.732	0.425	7e-93
UNIPROTKB|Q28GH3	641	uba2 "SUMO-activating enzyme s	0.850	0.747	0.411	7e-93
UNIPROTKB|Q7ZY60	641	uba2-b "SUMO-activating enzyme	0.849	0.745	0.410	1.5e-92
UNIPROTKB|A4FV12	640	UBA2 "UBA2 protein" [Bos tauru	0.833	0.732	0.423	2.4e-92

TAIR|locus:2050069 SAE2 "SUMO-activating enzyme 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 2096 (742.9 bits), Expect = 5.7e-217, P = 5.7e-217
 Identities = 404/512 (78%), Positives = 452/512 (88%)

Query:     1 MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQ 60
             M +++Q  AIKGAKVLMVGAGGIGCELLKTLALSGF+DIHIIDMDTIEVSNLNRQFLFR+
Sbjct:     1 MATQQQQSAIKGAKVLMVGAGGIGCELLKTLALSGFEDIHIIDMDTIEVSNLNRQFLFRR 60

Query:    61 SHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHV 120
             SHVGQSKAKVARDAVL+FRP ++I ++HANVK+P+F+V+FFKQF+VVLNGLDNLDARRHV
Sbjct:    61 SHVGQSKAKVARDAVLRFRPNINIRSYHANVKNPEFDVDFFKQFDVVLNGLDNLDARRHV 120

Query:   121 NRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHC 180
             NRLCLAADVPLVESGTTGFLGQVTVH+KGKTECYECQ KPAPKTYPVCTITSTP+KFVHC
Sbjct:   121 NRLCLAADVPLVESGTTGFLGQVTVHIKGKTECYECQTKPAPKTYPVCTITSTPTKFVHC 180

Query:   181 IVWAKDLLFAKLFGDKNQENDLNVRXXXXXXXXX-XEDVFVRRKDEDIDQYGRRIYDHVF 239
             IVWAKDLLFAKLFGDKNQ+NDLNVR           EDVF R +DEDI+QYGR+IYDHVF
Sbjct:   181 IVWAKDLLFAKLFGDKNQDNDLNVRSNNSASSSKETEDVFERSEDEDIEQYGRKIYDHVF 240

Query:   240 GYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSS--VSAMASLG 297
             G NIE A SNEETWKNR RP+PIYS DV+PE+LT+QNG+  +NC V      VSAM SLG
Sbjct:   241 GSNIEAALSNEETWKNRRRPRPIYSKDVLPESLTQQNGST-QNCSVTDGDLMVSAMPSLG 299

Query:   298 LKNPQDTWTLLESSRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFG 357
             LKNPQ+ W L ++S +F+EALKLFFAKR+KEIG+L+FDKDDQLAVEFVTAAANIRA SFG
Sbjct:   300 LKNPQELWGLTQNSLVFIEALKLFFAKRKKEIGHLTFDKDDQLAVEFVTAAANIRAESFG 359

Query:   358 ISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRMTYCLEHITKKML 417
             I LHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVL KD DK+RMTYCLEH +KK+L
Sbjct:   360 IPLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLKKDVDKFRMTYCLEHPSKKLL 419

Query:   418 LMPVEPYEPNKSCYVCSETPLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYE 477
             LMP+EPYEPN +CYVCSETPL LEINT +SKLRD V+KIVK KLG+N PLIMHG++LLYE
Sbjct:   420 LMPIEPYEPNPACYVCSETPLVLEINTRKSKLRDLVDKIVKTKLGMNLPLIMHGNSLLYE 479

Query:   478 VGDDLDEVEVANYAANLEKVKIQASSVTLCSS 509
             VGDDLD++ VANY ANLEK   +  S  L  S
Sbjct:   480 VGDDLDDIMVANYNANLEKYLSELPSPILNGS 511

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0016925 "protein sumoylation" evidence=ISS;IDA

GO:0019948 "SUMO activating enzyme activity" evidence=ISS;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

DICTYBASE|DDB_G0286919 uba2 "sumo-activating enzyme subunit 2" [Dictyostelium discoideum (taxid:44689)]

 Score = 1016 (362.7 bits), Expect = 1.6e-102, P = 1.6e-102
 Identities = 211/517 (40%), Positives = 325/517 (62%)

Query:     2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQS 61
             + +   + I+  K+L+VGAGGIGCELLK L L+GF++I IID+DTI++SNLNRQFLFR+ 
Sbjct:    12 LGQSTFDKIQTCKILVVGAGGIGCELLKNLVLTGFKNIDIIDLDTIDISNLNRQFLFRKQ 71

Query:    62 HVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVN 121
             H+G SKAK+A+++V+K+  Q++ITAHH +VK  +F  EFFKQF++V+N LDN+ ARRHVN
Sbjct:    72 HIGMSKAKIAKESVMKYNEQVNITAHHGDVKSSEFGSEFFKQFDLVMNALDNISARRHVN 131

Query:   122 RLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCI 181
             RLCL+ DVP++ESGT G+LGQV+V  KGKTEC+ECQP   PK + VCTI + PS  +HCI
Sbjct:   132 RLCLSVDVPMIESGTAGYLGQVSVIRKGKTECFECQPIAVPKQFAVCTIRTNPSAPIHCI 191

Query:   182 VWAKDLLFAKLFGDKNQE---NDLNVRXXXXXXXXXXEDVFVRRKDED--IDQ---YGRR 233
             VWAK +LF KLFG K+ +   +  ++           E++   ++DE   I++   + R 
Sbjct:   192 VWAK-MLFGKLFGPKDDDGGGDSSSLTDLDNNIIHGTEELGNIKRDEQLLIEKEKGFKRW 250

Query:   234 IYDHVFGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAM 293
             ++  +F  +IE      + WK++  P  +   +++      Q        +         
Sbjct:   251 VFHKIFHTDIETLIHMPDLWKDKQPPTSLKLDEILSSKEVSQAEEEGDQLI--------- 301

Query:   294 ASLGLKNP-QDTWTLLESSRIFLEALKLFFAKREKEIGN---LSFDKDDQLAVEFVTAAA 349
                  K P Q  WT  E+  +FL+ L+    K++ +  N   +++DKDD+LA+ FV +A+
Sbjct:   302 ----FKLPDQKQWTFKENVEVFLDCLEKL--KQQFDQSNSKPMTWDKDDELALSFVCSAS 355

Query:   350 NIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRMTYCL 409
             NIR+  FGI + S F+ K +AGNI+ A+ATTNA+I GLIV+EAIKV+    D+   TY  
Sbjct:   356 NIRSKIFGIPMKSRFDVKSMAGNIIPAIATTNAVIGGLIVMEAIKVVDGRFDQCLSTYLY 415

Query:   410 EHITKKMLLMPVEPYEPNKSCYVCSETPLSLEINTSRSKLRDFVEKIVKAKLGINFPLIM 469
             +  + K LLMP +    N  C+VC+ + +   +NT ++ +  F++ ++K  L +N P++ 
Sbjct:   416 QLPSGKRLLMPTQLEPQNPKCFVCNRSFIICRLNTEKTTISQFIDHVLKKSLAVNEPILT 475

Query:   470 HGSNLLYEVGD-DLDEVEVANYAANLEKVKIQASSVT 505
              G++++YE GD DL + E+    + +EK  +    +T
Sbjct:   476 VGNDIIYEGGDQDLSKEEIEQ-RSKIEKKTLATHRLT 511

GO:0008641 "small protein activating enzyme activity" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0031510 "SUMO activating enzyme complex" evidence=ISS

GO:0019948 "SUMO activating enzyme activity" evidence=ISS

GO:0016925 "protein sumoylation" evidence=IEA;ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

ASPGD|ASPL0000050249 AN2450 [Emericella nidulans (taxid:162425)]

 Score = 916 (327.5 bits), Expect = 5.4e-94, Sum P(2) = 5.4e-94
 Identities = 207/472 (43%), Positives = 285/472 (60%)

Query:     6 QLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQ 65
             Q   I+ ++VL+VGAGGIGCELLK L L+GF +IH+ID+DTI++SNLNRQFLFR  H+ +
Sbjct:    14 QANRIRESRVLLVGAGGIGCELLKNLLLTGFGEIHVIDLDTIDLSNLNRQFLFRHEHIKK 73

Query:    66 SKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL 125
              KA VA++   KF+P   I A+HAN+KD KF+V++F  FNVV N LDNLDARRHVN +CL
Sbjct:    74 PKAIVAKEVAQKFQPSARIEAYHANIKDSKFDVDWFATFNVVFNALDNLDARRHVNMMCL 133

Query:   126 AADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAK 185
             AADVPL+ESGTTGF GQV V  K  TECY+C  K  PK++PVCTI STPS+ +HCIVWAK
Sbjct:   134 AADVPLIESGTTGFNGQVQVIKKNVTECYDCNSKEVPKSFPVCTIRSTPSQPIHCIVWAK 193

Query:   186 DLLFAKLFGDKNQENDLNVRXXXXXXXXXXEDVFVRRKD---EDIDQ------YGRRIYD 236
               L  +LFG    E D              E   ++R+    ++I Q      + ++++D
Sbjct:   194 SYLLPELFG--TSETDTEEFDYSADADNVEEIENLQREARALKEIRQSMGSAEFAQKVFD 251

Query:   237 HVFGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASL 296
              VF  +I      E+ W +R  P+P+        +  E  G +        S+V    SL
Sbjct:   252 KVFKEDINRLRGMEDMWTSRKAPEPL--------DFKELEGTL--------STVEPEVSL 295

Query:   297 GLKNPQDTWTLLESSRIFLEAL----KLFFAKREKEIGN---LSFDKDDQLAVEFVTAAA 349
                  Q  WT+ E+  +F ++L    K     + +E G+   L FDKDD   ++FVTA+A
Sbjct:   296 ---KDQRVWTVSENLAVFKDSLDRLSKRLKTLQSEESGSPAVLVFDKDDVDTLDFVTASA 352

Query:   350 NIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRMTYCL 409
             N+RA  FGI   S F+ K +AGNI+ A+ATTNA+ AGL V++A+KVL  D D  +M +  
Sbjct:   353 NLRATIFGIEPKSKFDTKQMAGNIIPAIATTNAMTAGLCVLQALKVLKGDYDHAKMVFLE 412

Query:   410 EHITKKMLLMPVEPYEPNKSCYVCSETPLSLEINTSRSKLRDFVEKIVKAKL 461
                 + +    + P  PN  C VCS     +EI+ +R+ L D VE I++ +L
Sbjct:   413 RSGARAINSESLNP--PNPHCPVCSVAHARIEIDLTRATLNDLVENILRTQL 462

GO:0005634 "nucleus" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008641 "small protein activating enzyme activity" evidence=IEA

GO:0016925 "protein sumoylation" evidence=IEA

ZFIN|ZDB-GENE-040426-2681 uba2 "ubiquitin-like modifier activating enzyme 2" [Danio rerio (taxid:7955)]

 Score = 933 (333.5 bits), Expect = 1.0e-93, P = 1.0e-93
 Identities = 200/479 (41%), Positives = 313/479 (65%)

Query:     5 RQL-EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHV 63
             +QL +++   +VL+VGAGGIGCELLK L L+GF++I +ID+DTI+VSNLNRQFLF++ HV
Sbjct:    10 KQLADSLSSCRVLVVGAGGIGCELLKNLVLTGFKNIEVIDLDTIDVSNLNRQFLFQKKHV 69

Query:    64 GQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL 123
             G+SKA+VA+++VL+F P  +ITA+H ++ +P +NVEFF+ F +V+N LDN  AR HVNR+
Sbjct:    70 GKSKAQVAKESVLRFCPSANITAYHDSIMNPDYNVEFFRNFQLVMNALDNRAARNHVNRM 129

Query:   124 CLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVW 183
             CLAAD+PL+ESGT G+LGQVTV  KG+TECYECQPKP  KT+P CTI +TPS+ +HCIVW
Sbjct:   130 CLAADIPLIESGTAGYLGQVTVIKKGQTECYECQPKPTQKTFPGCTIRNTPSEPIHCIVW 189

Query:   184 AKDLLFAKLFGDKNQENDLNVRXXXXXXXXXXEDVFVRR----KDEDIDQYGRRIYDHVF 239
             AK  LF +LFG+++ + +++             D   R     +D DI +   + +    
Sbjct:   190 AK-YLFNQLFGEEDADQEVSPDTADPEAAWNPADAAARATASDQDGDIKRVSTKEWARST 248

Query:   240 GYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCV-VDTSSVSAMASL-- 296
             GY+  +   N+ +  ++  P  ++  D+M     ++     K  + ++   ++ +A    
Sbjct:   249 GYD-PIKLFNKVSALSQTSPY-LFKDDIMYLLTMDKLWKKRKAPLPLEWEEINQLAGSQE 306

Query:   297 -----GLKNPQDTWTLLESSRIFLEALKLFFAK-REKEIG-NLSFDKDDQLAVEFVTAAA 349
                  GLK+ Q    +   +++F  +++   ++ +EK  G  L +DKDD  A++FVTAA+
Sbjct:   307 QVIGSGLKD-QQVLGVQGYAQLFQHSVETLRSQLKEKGDGAELVWDKDDPPAMDFVTAAS 365

Query:   350 NIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRMTYCL 409
             N+R   F +++ S F+ K +AGNI+ A+ATTNA+IAGLIV+EA+K+L  D ++ R  +  
Sbjct:   366 NLRMNVFSMNMKSRFDVKSMAGNIIPAIATTNAVIAGLIVLEALKILNSDFEQCRTIFLN 425

Query:   410 EHIT-KKMLLMPVEPYEPNKSCYVCSETP-LSLEINTSRSKLRDFVEKIVKAKLGINFP 466
             +    +K LL+P     PN SCYVC+  P +++++N  ++ ++   +KI+K K G+  P
Sbjct:   426 KQPNPRKKLLVPCALDPPNASCYVCASKPEVTVKLNVHKTMVQALQDKILKEKFGMVAP 484

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0008641 "small protein activating enzyme activity" evidence=IEA

GO:0019948 "SUMO activating enzyme activity" evidence=ISS

GO:0016925 "protein sumoylation" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

UNIPROTKB|Q9UBT2 UBA2 "SUMO-activating enzyme subunit 2" [Homo sapiens (taxid:9606)]

 Score = 932 (333.1 bits), Expect = 1.3e-93, P = 1.3e-93
 Identities = 216/511 (42%), Positives = 315/511 (61%)

Query:     5 RQL-EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHV 63
             R+L EA+ G +VL+VGAGGIGCELLK L L+GF  I +ID+DTI+VSNLNRQFLF++ HV
Sbjct:     9 RELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHV 68

Query:    64 GQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL 123
             G+SKA+VA+++VL+F P+ +I A+H ++ +P +NVEFF+QF +V+N LDN  AR HVNR+
Sbjct:    69 GRSKAQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRM 128

Query:   124 CLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVW 183
             CLAADVPL+ESGT G+LGQVT   KG TECYEC PKP  +T+P CTI +TPS+ +HCIVW
Sbjct:   129 CLAADVPLIESGTAGYLGQVTTIKKGVTECYECHPKPTQRTFPGCTIRNTPSEPIHCIVW 188

Query:   184 AKDLLFAKLFGDKNQENDLNV-RXXXXXXXXXXE-DVFVRRKDEDID-------QYGRRI 234
             AK  LF +LFG+++ + +++  R          E +   R  +ED D       ++ +  
Sbjct:   189 AK-YLFNQLFGEEDADQEVSPDRADPEAAWEPTEAEARARASNEDGDIKRISTKEWAKST 247

Query:   235 -YDHV------FGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDT 287
              YD V      F  +I    + ++ W+ R  P P+  A+V  +   E N +  +N     
Sbjct:   248 GYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAEVQSQG-EETNASDQQN----- 301

Query:   288 SSVSAMASLGLKNPQDTWTLLESSRIF---LEALKLFFAKREKEIG-NLSFDKDDQLAVE 343
                     LGLK+ Q    +   +R+F   +E L++  A  EK  G  L +DKDD  A++
Sbjct:   302 -----EPQLGLKD-QQVLDVKSYARLFSKSIETLRVHLA--EKGDGAELIWDKDDPSAMD 353

Query:   344 FVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKY 403
             FVT+AAN+R   F +++ S F+ K +AGNI+ A+ATTNA+IAGLIV+E +K+L    D+ 
Sbjct:   354 FVTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKILSGKIDQC 413

Query:   404 RMTYCLEHIT-KKMLLMPVEPYEPNKSCYVCSETP-LSLEINTSRSKLRDFVEKIVKAKL 461
             R  +  +    +K LL+P     PN +CYVC+  P +++ +N  +  +    +KIVK K 
Sbjct:   414 RTIFLNKQPNPRKKLLVPCALDPPNPNCYVCASKPEVTVRLNVHKVTVLTLQDKIVKEKF 473

Query:   462 GINFP--LIMHGSNLLYEVGDDLDEVEVANY 490
              +  P   I  G   +  +  +  E E  N+
Sbjct:   474 AMVAPDVQIEDGKGTIL-ISSEEGETEANNH 503

GO:0005524 "ATP binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016925 "protein sumoylation" evidence=IEA;IDA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0019948 "SUMO activating enzyme activity" evidence=IDA

GO:0008047 "enzyme activator activity" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0043085 "positive regulation of catalytic activity" evidence=TAS

MGI|MGI:1858313 Uba2 "ubiquitin-like modifier activating enzyme 2" [Mus musculus (taxid:10090)]

 Score = 928 (331.7 bits), Expect = 3.4e-93, P = 3.4e-93
 Identities = 211/484 (43%), Positives = 301/484 (62%)

Query:     5 RQL-EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHV 63
             R+L EA+ G +VL+VGAGGIGCELLK L L+GF  I +ID+DTI+VSNLNRQFLF++ HV
Sbjct:     9 RELAEAVSGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHV 68

Query:    64 GQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL 123
             G+SKA+VA+++VL+F PQ +I AHH ++ +P +NVEFF+QF +V+N LDN  AR HVNR+
Sbjct:    69 GRSKAQVAKESVLQFHPQANIEAHHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRM 128

Query:   124 CLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVW 183
             CLAADVPL+ESGT G+LGQVT   KG TECYEC PKP  +T+P CTI +TPS+ +HCIVW
Sbjct:   129 CLAADVPLIESGTAGYLGQVTTIKKGVTECYECHPKPTQRTFPGCTIRNTPSEPIHCIVW 188

Query:   184 AKDLLFAKLFGDKNQENDLNV-RXXXXXXXXXXE-DVFVRRKDEDID-------QYGRRI 234
             AK  LF +LFG+++ + +++  R          E +   R  +ED D       ++ +  
Sbjct:   189 AK-YLFNQLFGEEDADQEVSPDRADPEAAWEPTEAEARARASNEDGDIKRISTKEWAKST 247

Query:   235 -YDHV------FGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDT 287
              YD V      F  +I    + ++ W+ R  P P+  A+V  +   E N +         
Sbjct:   248 GYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAEVQSQG--EANADQQNE----- 300

Query:   288 SSVSAMASLGLKNPQ--DTWTLLESSRIFLEALKLFFAKREKEIG-NLSFDKDDQLAVEF 344
                     LGLK+ Q  D  +        +E L++  A  EK  G  L +DKDD  A++F
Sbjct:   301 ------PQLGLKDQQVLDVKSYASLFSKSIETLRVHLA--EKGDGAELIWDKDDPPAMDF 352

Query:   345 VTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYR 404
             VT+AAN+R   F +++ S F+ K +AGNI+ A+ATTNA+IAGLIV+E +K+L    D+ R
Sbjct:   353 VTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKILSGKIDQCR 412

Query:   405 MTYCLEHIT-KKMLLMPVEPYEPNKSCYVCSETP-LSLEINTSRSKLRDFVEKIVKAKLG 462
               +  +    +K LL+P     PN +CYVC+  P +++ +N  +  +    +KIVK K  
Sbjct:   413 TIFLNKQPNPRKKLLVPCALDPPNTNCYVCASKPEVTVRLNVHKVTVLTLQDKIVKEKFA 472

Query:   463 INFP 466
             +  P
Sbjct:   473 MVAP 476

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IPI

GO:0008641 "small protein activating enzyme activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0016925 "protein sumoylation" evidence=ISO

GO:0019948 "SUMO activating enzyme activity" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=ISO

UNIPROTKB|E2R837 UBA2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 925 (330.7 bits), Expect = 7.0e-93, P = 7.0e-93
 Identities = 218/512 (42%), Positives = 315/512 (61%)

Query:     5 RQL-EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHV 63
             R+L EA+ G +VL+VGAGGIGCELLK L L+GF  I +ID+DTI+VSNLNRQFLF++ HV
Sbjct:     9 RELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHV 68

Query:    64 GQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL 123
             G+SKA+VA+++VL+F P+ +I A+H ++ +P +NVEFF+QF +V+N LDN  AR HVNR+
Sbjct:    69 GRSKAQVAKESVLQFYPKANIIAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRM 128

Query:   124 CLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVW 183
             CLAADVPL+ESGT G+LGQVT   KG TECYEC PKP  +T+P CTI +TPS+ +HCIVW
Sbjct:   129 CLAADVPLIESGTAGYLGQVTTIKKGVTECYECHPKPTQRTFPGCTIRNTPSEPIHCIVW 188

Query:   184 AKDLLFAKLFGDKNQENDLNV-RXXXXXXXXXXE-DVFVRRKDEDID-------QYGRRI 234
             AK  LF +LFG+++ + +++  R          E +   R  +ED D       ++ +  
Sbjct:   189 AK-YLFNQLFGEEDADQEVSPDRADPEASWEPMEAEARARASNEDGDIKRISTKEWAKST 247

Query:   235 -YDHV------FGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDT 287
              YD V      F  +I    + ++ W+ R  P P+  A+V  +   E N +  +N     
Sbjct:   248 GYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAEVQSQG-EETNASDQQN----- 301

Query:   288 SSVSAMASLGLKNPQ--D--TWTLLESSRIFLEALKLFFAKREKEIG-NLSFDKDDQLAV 342
                     LGLK+ Q  D  ++  L S  I  E L++  A  EK  G  L +DKDD  A+
Sbjct:   302 -----EPQLGLKDQQVLDVKSYACLFSKSI--ETLRVHLA--EKGDGAELIWDKDDPSAM 352

Query:   343 EFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDK 402
             +FVT+AAN+R   F +++ S F+ K +AGNI+ A+ATTNA+IAGLIV+E +K+L    D+
Sbjct:   353 DFVTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKILSGKIDQ 412

Query:   403 YRMTYCLEHIT-KKMLLMPVEPYEPNKSCYVCSETP-LSLEINTSRSKLRDFVEKIVKAK 460
              R  +  +    +K LL+P     PN +CYVC+  P +++ +N  +  +    +KIVK K
Sbjct:   413 CRTIFLNKQPNPRKKLLVPCALDRPNPNCYVCASKPEVTVRLNVHKVTVLTLQDKIVKEK 472

Query:   461 LGINFP--LIMHGSNLLYEVGDDLDEVEVANY 490
               +  P   I  G   +  +  +  E E  N+
Sbjct:   473 FAMVAPDVQIEDGKGTIL-ISSEEGETEANNH 503

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0019948 "SUMO activating enzyme activity" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

UNIPROTKB|Q28GH3 uba2 "SUMO-activating enzyme subunit 2" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 925 (330.7 bits), Expect = 7.0e-93, P = 7.0e-93
 Identities = 213/518 (41%), Positives = 324/518 (62%)

Query:     8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
             EA+  +++L+VGAGGIGCELLK L L+GF ++ +ID+DTI+VSNLNRQFLF++ HVG+SK
Sbjct:    13 EAVSTSRLLVVGAGGIGCELLKNLVLTGFINLDVIDLDTIDVSNLNRQFLFQKKHVGRSK 72

Query:    68 AKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA 127
             A+VA+++VL+F P+ +ITA+H ++ +P +NVEFFKQF +V+N LDN  AR HVNR+CLAA
Sbjct:    73 AQVAKESVLQFCPEANITAYHDSIMNPDYNVEFFKQFTMVMNALDNNAARNHVNRMCLAA 132

Query:   128 DVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDL 187
              +PL+ESGT G+LGQVTV  KG TECYECQPKP  KT+P CTI +TPS+ +HCIVWAK  
Sbjct:   133 GIPLIESGTAGYLGQVTVVKKGVTECYECQPKPTQKTFPGCTIRNTPSEPIHCIVWAK-Y 191

Query:   188 LFAKLFG--DKNQE--NDLNVRXXXXXXXXXXEDVFVRRKDEDID-----QYGR------ 232
             LF +LFG  D +QE   D+             E       D DI      Q+ +      
Sbjct:   192 LFNQLFGEEDADQEVAPDIADPEAAWDPTQAAERANASNVDGDIKRVSTKQWAKSTGYDP 251

Query:   233 -RIYDHVFGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVS 291
              ++++ +F  +I+   + +  W+ R  P P+  + +        N    +NC  +T + S
Sbjct:   252 IKLFNKLFRDDIKYLLTMDRLWRKRKPPVPLEWSSL-------HN---KENCS-ETQNES 300

Query:   292 AMASLGLKNPQDTWTLLESSRIFLEALKLFFAK-REKEIG-NLSFDKDDQLAVEFVTAAA 349
             ++   GLK+ Q    +   +++F ++++    + REK  G  L +DKDD  A++FVTAAA
Sbjct:   301 SLQ--GLKD-QKVLDVTSCAQLFSKSVETLREQLREKGNGAELVWDKDDPPAMDFVTAAA 357

Query:   350 NIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRMTYCL 409
             N+R   F +++ S F+ K +AGNI+ A+ATTNA+I+GLIV+E +K+L  +T++ R  +  
Sbjct:   358 NLRMHIFSMNMKSRFDVKSMAGNIIPAIATTNAVISGLIVLEGLKILSGNTEQCRTVFLN 417

Query:   410 EHIT-KKMLLMPVEPYEPNKSCYVCSETP-LSLEINTSRSKLRDFVEKIVKAKLGINFP- 466
             +    +K LL+P     PN SCYVC+  P +++++N  +  ++   +KI+K K  +  P 
Sbjct:   418 KQPNPRKKLLVPCSLDPPNPSCYVCAIKPEVTVKLNVHKVTVQMLQDKILKEKFAMVAPD 477

Query:   467 -LIMHGSNLLYEVGDDLDEVEVANYAANLEKVKIQASS 503
               I  G   +  +  +  E + AN    + +  I+ SS
Sbjct:   478 VQIEDGKGTIL-ISSEAGETD-ANNNRKISEFGIRNSS 513

GO:0016925 "protein sumoylation" evidence=ISS

GO:0019948 "SUMO activating enzyme activity" evidence=ISS

UNIPROTKB|Q7ZY60 uba2-b "SUMO-activating enzyme subunit 2-B" [Xenopus laevis (taxid:8355)]

 Score = 922 (329.6 bits), Expect = 1.5e-92, P = 1.5e-92
 Identities = 213/519 (41%), Positives = 322/519 (62%)

Query:     8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
             EA+  +++L+VGAGGIGCELLK L L+GF ++ +ID+DTI+VSNLNRQFLF++ HVG+SK
Sbjct:    13 EAVSASRLLVVGAGGIGCELLKNLVLTGFTNLDVIDLDTIDVSNLNRQFLFQKKHVGRSK 72

Query:    68 AKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA 127
             A+VA+++VL+F P  SITA+H ++ +P +NVEFFKQF + +N LDN  AR HVNR+CLAA
Sbjct:    73 AQVAKESVLQFCPDASITAYHDSIMNPDYNVEFFKQFTMAMNALDNNAARNHVNRMCLAA 132

Query:   128 DVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDL 187
              +PL+ESGT G+LGQV+V  KG TECYECQPKP  KT+P CTI +TPS+ +HCIVWAK  
Sbjct:   133 GIPLIESGTAGYLGQVSVIKKGVTECYECQPKPTQKTFPGCTIRNTPSEPIHCIVWAK-Y 191

Query:   188 LFAKLFG--DKNQE--NDLNVRXXXXXXXXXXEDVFVRRKDEDID-----QYGR------ 232
             LF +LFG  D +QE   D+             E       D DI      Q+ +      
Sbjct:   192 LFNQLFGEEDADQEVAPDIADPEAAWDPTKAAERANASNVDGDIKRVSTKQWAKSTGYDP 251

Query:   233 -RIYDHVFGYNIEVASSNEETWKNRNRPKPIYSADVM-PENLTEQNGNVAKNCVVDTSSV 290
              ++++ +F  +I+   + +  W+ R  P P+  A +   EN +E         + + SS+
Sbjct:   252 IKLFNKLFRDDIKYLLTMDRLWRKRKPPIPLEWASLHNKENCSE---------IQNESSL 302

Query:   291 SAMASLGLKNPQDTWTLLESSRIFLEALKLFFAK-REKEIG-NLSFDKDDQLAVEFVTAA 348
                  LGLK+ Q    +   +++F ++++    + REK  G  L +DKDD  A++FVTAA
Sbjct:   303 -----LGLKD-QKVLNVASYAQLFSKSVETLREQLREKGDGAELVWDKDDVPAMDFVTAA 356

Query:   349 ANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRMTYC 408
             AN+R   F +++ S F+ K +AGNI+ A+ATTNA+I+GLIV+E +K+L  +T++ R  + 
Sbjct:   357 ANLRMHIFSMNMKSKFDVKSMAGNIIPAIATTNAVISGLIVLEGLKILSGNTEQCRTVFL 416

Query:   409 LEHIT-KKMLLMPVEPYEPNKSCYVCSETP-LSLEINTSRSKLRDFVEKIVKAKLGINFP 466
              +    +K LL+P     PN SCYVC+  P +++++N  +  ++   +KI+K K  +  P
Sbjct:   417 NKQPNPRKKLLVPCSLDPPNPSCYVCAIKPEVTVKLNVHKVTVQMLQDKILKEKFAMVAP 476

Query:   467 --LIMHGSNLLYEVGDDLDEVEVANYAANLEKVKIQASS 503
                I  G   +  +  +  E +  N+   + +  I+ SS
Sbjct:   477 DVQIEDGKGTIL-ISSEAGETDANNHR-KISEFGIRNSS 513

GO:0016925 "protein sumoylation" evidence=ISS

GO:0019948 "SUMO activating enzyme activity" evidence=ISS

UNIPROTKB|A4FV12 UBA2 "UBA2 protein" [Bos taurus (taxid:9913)]

 Score = 920 (328.9 bits), Expect = 2.4e-92, P = 2.4e-92
 Identities = 217/512 (42%), Positives = 315/512 (61%)

Query:     5 RQL-EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHV 63
             R+L EA+ G +VL+VGAGGIGCELLK L L+GF  I +ID+DTI+VSNLNRQFLF++ HV
Sbjct:     9 RELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHV 68

Query:    64 GQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL 123
             G+SKA+VA+++VL+F P+ +I A+H ++ +P +NVEFF+QF +V+N LDN  AR HVNR+
Sbjct:    69 GRSKAQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRM 128

Query:   124 CLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVW 183
             CLAADVPL+ESGT G+LGQVT   KG TECYEC PKP  +T+P CTI +TPS+ +HCIVW
Sbjct:   129 CLAADVPLIESGTAGYLGQVTTIKKGVTECYECHPKPTQRTFPGCTIRNTPSEPIHCIVW 188

Query:   184 AKDLLFAKLFGDKNQENDLNV-RXXXXXXXXXXE-DVFVRRKDEDID-------QYGRRI 234
             AK  LF +LFG+++ + +++  R          E +   R  +ED D       ++ +  
Sbjct:   189 AK-YLFNQLFGEEDADQEVSPDRADPEASWEPMEAEARARASNEDGDIKRVSTKEWAKST 247

Query:   235 -YDHV------FGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDT 287
              YD V      F  +I    + ++ W+ R  P P+  A+V  +   E + +  +N     
Sbjct:   248 GYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAEVQSQG-EETSASDQQN----- 301

Query:   288 SSVSAMASLGLKNPQ--D--TWTLLESSRIFLEALKLFFAKREKEIG-NLSFDKDDQLAV 342
                     LGLK+ Q  D  ++  L S  I  E L++  A  EK  G  L +DKDD  A+
Sbjct:   302 -----EPQLGLKDQQVLDVKSYACLFSKSI--ETLRVHLA--EKGDGAELIWDKDDPSAM 352

Query:   343 EFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDK 402
             +FVT+AAN+R   F +++ S F+ K +AGNI+ A+ATTNA+IAGLIV+E +K+L    D+
Sbjct:   353 DFVTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKILSGKIDQ 412

Query:   403 YRMTYCLEHIT-KKMLLMPVEPYEPNKSCYVCSETP-LSLEINTSRSKLRDFVEKIVKAK 460
              R  +  +    +K LL+P     PN +CYVC+  P +++ +N  +  +    +KIVK K
Sbjct:   413 CRTIFLNKQPNPRKKLLVPCALDAPNPNCYVCASKPEVTVRLNVHKVTVLTLQDKIVKEK 472

Query:   461 LGINFP--LIMHGSNLLYEVGDDLDEVEVANY 490
               +  P   I  G   +  +  +  E E  N+
Sbjct:   473 FAMVAPDVQIEDGKGTIL-ISSEEGETEANNH 503

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0019948 "SUMO activating enzyme activity" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9NAN1	SAE2_CAEEL	6, ., 3, ., 2, ., -	0.3676	0.8419	0.8144	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	563
cd01489	312	cd01489, Uba2_SUMO, Ubiquitin activating enzyme (E	1e-136
cd01484	234	cd01484, E1-2_like, Ubiquitin activating enzyme (E	6e-74
cd01488	291	cd01488, Uba3_RUB, Ubiquitin activating enzyme (E1	5e-65
cd01490	435	cd01490, Ube1_repeat2, Ubiquitin activating enzyme	1e-58
TIGR01408	1008	TIGR01408, Ube1, ubiquitin-activating enzyme E1	8e-57
pfam00899	134	pfam00899, ThiF, ThiF family	1e-47
cd01489	312	cd01489, Uba2_SUMO, Ubiquitin activating enzyme (E	2e-47
COG0476	254	COG0476, ThiF, Dinucleotide-utilizing enzymes invo	9e-43
cd00757	228	cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA	3e-42
cd01483	143	cd01483, E1_enzyme_family, Superfamily of activati	5e-37
PRK05690	245	PRK05690, PRK05690, molybdopterin biosynthesis pro	1e-31
TIGR02355	240	TIGR02355, moeB, molybdopterin synthase sulfurylas	4e-29
TIGR02356	202	TIGR02356, adenyl_thiF, thiazole biosynthesis aden	6e-29
pfam02134	66	pfam02134, UBACT, Repeat in ubiquitin-activating (	1e-25
PRK08762	376	PRK08762, PRK08762, molybdopterin biosynthesis pro	1e-25
PRK07878	392	PRK07878, PRK07878, molybdopterin biosynthesis-lik	3e-25
PRK05600	370	PRK05600, PRK05600, thiamine biosynthesis protein	6e-24
pfam10585	44	pfam10585, UBA_e1_thiolCys, Ubiquitin-activating e	3e-21
cd00755	231	cd00755, YgdL_like, Family of activating enzymes (	3e-21
PRK05597	355	PRK05597, PRK05597, molybdopterin biosynthesis pro	1e-20
COG1179	263	COG1179, COG1179, Dinucleotide-utilizing enzymes i	2e-20
cd01492	197	cd01492, Aos1_SUMO, Ubiquitin activating enzyme (E	5e-18
PRK07411	390	PRK07411, PRK07411, hypothetical protein; Validate	1e-17
PRK08644	212	PRK08644, PRK08644, thiamine biosynthesis protein	2e-17
PRK08328	231	PRK08328, PRK08328, hypothetical protein; Provisio	6e-17
cd01490	435	cd01490, Ube1_repeat2, Ubiquitin activating enzyme	5e-15
cd01487	174	cd01487, E1_ThiF_like, E1_ThiF_like	6e-14
cd01485	198	cd01485, E1-1_like, Ubiquitin activating enzyme (E	6e-14
PRK08223	287	PRK08223, PRK08223, hypothetical protein; Validate	2e-13
PRK12475	338	PRK12475, PRK12475, thiamine/molybdopterin biosynt	2e-13
PRK15116	268	PRK15116, PRK15116, sulfur acceptor protein CsdL;	4e-12
PRK07688	339	PRK07688, PRK07688, thiamine/molybdopterin biosynt	1e-11
TIGR02354	200	TIGR02354, thiF_fam2, thiamine biosynthesis protei	1e-11
cd01484	234	cd01484, E1-2_like, Ubiquitin activating enzyme (E	2e-11
cd01491	286	cd01491, Ube1_repeat1, Ubiquitin activating enzyme	2e-10
PRK14851	679	PRK14851, PRK14851, hypothetical protein; Provisio	6e-10
cd01493	425	cd01493, APPBP1_RUB, Ubiquitin activating enzyme (	1e-09
cd01488	291	cd01488, Uba3_RUB, Ubiquitin activating enzyme (E1	2e-09
PRK14852	989	PRK14852, PRK14852, hypothetical protein; Provisio	4e-09
TIGR01408	1008	TIGR01408, Ube1, ubiquitin-activating enzyme E1	2e-07
TIGR01381	664	TIGR01381, E1_like_apg7, E1-like protein-activatin	7e-07
cd01486	307	cd01486, Apg7, Apg7 is an E1-like protein, that ac	7e-05
TIGR03736	244	TIGR03736, PRTRC_ThiF, PRTRC system ThiF family pr	1e-04
pfam01488	133	pfam01488, Shikimate_DH, Shikimate / quinate 5-deh	0.002

>gnl|CDD|238766 cd01489, Uba2_SUMO, Ubiquitin activating enzyme (E1) subunit UBA2

 Score =  397 bits (1021), Expect = e-136
 Identities = 144/254 (56%), Positives = 173/254 (68%), Gaps = 44/254 (17%)

Query: 14  KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARD 73
           KVL+VGAGGIGCELLK L L+GF +IHIID+DTI++SNLNRQFLFR+ HVG+SKA+VA++
Sbjct: 1   KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKE 60

Query: 74  AVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVE 133
           AVL F P + I A+HAN+KDP FNVEFFKQF++V N LDNL ARRHVN++CLAADVPL+E
Sbjct: 61  AVLSFNPNVKIVAYHANIKDPDFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIE 120

Query: 134 SGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLF 193
           SGTTGFLGQV V  KGKTECYECQPK  PKT+PVCTI STPS+ +HCIVWAK L F    
Sbjct: 121 SGTTGFLGQVQVIKKGKTECYECQPKETPKTFPVCTIRSTPSQPIHCIVWAKSLFF---- 176

Query: 194 GDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQYGRRIYDHVFGYNIEVASSNEETW 253
                                                   +++ VF  +IE   S EE W
Sbjct: 177 ----------------------------------------LFNKVFKDDIERLLSMEELW 196

Query: 254 KNRNRPKPIYSADV 267
           K R  P P+   ++
Sbjct: 197 KTRKPPVPLSWKEL 210

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. Length = 312

>gnl|CDD|238761 cd01484, E1-2_like, Ubiquitin activating enzyme (E1), repeat 2-like

 Score =  235 bits (600), Expect = 6e-74
 Identities = 93/177 (52%), Positives = 119/177 (67%), Gaps = 1/177 (0%)

Query: 14  KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARD 73
           KVL+VGAGGIGCELLK LAL GF  IH+IDMDTI+VSNLNRQFLFR   +G+ K++VA +
Sbjct: 1   KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAE 60

Query: 74  AVLKFRPQMSITAHHANVKDPK-FNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLV 132
           AV    P   +  +   V   + FN  FF+QF++++N LDN+ ARR+VN + +   VPL+
Sbjct: 61  AVNDRNPNCKVVPYQNKVGPEQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLI 120

Query: 133 ESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLF 189
           ESGT GF G   V + G TEC EC   P  K +P+CTI S P    HCI WA+ L +
Sbjct: 121 ESGTEGFKGNAQVILPGMTECIECTLYPPQKNFPMCTIASMPRLPEHCIEWARMLQW 177

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologous to the second repeat of Ub-E1. Length = 234

>gnl|CDD|238765 cd01488, Uba3_RUB, Ubiquitin activating enzyme (E1) subunit UBA3

 Score =  213 bits (545), Expect = 5e-65
 Identities = 90/198 (45%), Positives = 128/198 (64%), Gaps = 12/198 (6%)

Query: 14  KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARD 73
           K+L++GAGG+GCELLK LALSGF++IH+IDMDTI+VSNLNRQFLFR+  +G+ KA+VA  
Sbjct: 1   KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAK 60

Query: 74  AVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVN----RLCLAAD- 128
            V    P +++T H   ++D   + EF++QFN+++ GLD+++ARR +N     L L  D 
Sbjct: 61  FVNDRVPGVNVTPHFGKIQD--KDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDP 118

Query: 129 ---VPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPK--TYPVCTITSTPSKFVHCIVW 183
              +PL++ GT GF G   V + G T C EC     P   T+P+CTI +TP    HCI +
Sbjct: 119 ESIIPLIDGGTEGFKGHARVILPGITACIECSLDLFPPQVTFPLCTIANTPRLPEHCIEY 178

Query: 184 AKDLLFAKLFGDKNQEND 201
           A  + + K F     + D
Sbjct: 179 ASLIQWPKEFPFVPLDGD 196

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. Length = 291

>gnl|CDD|238767 cd01490, Ube1_repeat2, Ubiquitin activating enzyme (E1), repeat 2

 Score =  200 bits (512), Expect = 1e-58
 Identities = 87/197 (44%), Positives = 113/197 (57%), Gaps = 13/197 (6%)

Query: 14  KVLMVGAGGIGCELLKTLALSGFQ-----DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKA 68
           KV +VGAG IGCELLK  AL G       +I + DMD IE SNLNRQFLFR   VG+ K+
Sbjct: 1   KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKS 60

Query: 69  KVARDAVLKFRPQMSITAHHANVKDPK----FNVEFFKQFNVVLNGLDNLDARRHVNRLC 124
           +VA  AV    P + ITA    V  P+    FN EF+++ + V N LDN+DAR +V+R C
Sbjct: 61  EVAAAAVKAMNPDLKITALQNRV-GPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRC 119

Query: 125 LAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWA 184
           +    PL+ESGT G  G   V +   TE Y     P  K+ P+CT+ + P+   H I WA
Sbjct: 120 VYYRKPLLESGTLGTKGNTQVVIPHLTESYSSSRDPPEKSIPLCTLKNFPNAIEHTIQWA 179

Query: 185 KDL---LFAKLFGDKNQ 198
           +D    LF +   + NQ
Sbjct: 180 RDEFEGLFKQPPENVNQ 196

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1. Length = 435

>gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1

 Score =  205 bits (522), Expect = 8e-57
 Identities = 141/484 (29%), Positives = 205/484 (42%), Gaps = 99/484 (20%)

Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQ-----DIHIIDMDTIEVSNLNRQFLFRQSH 62
           + ++   + +VG G IGCE+LK  AL G        I + D D IE SNLNRQFLFR  H
Sbjct: 415 QKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHH 474

Query: 63  VGQSKAKVARDAVLKFRPQMSITAHHANV---KDPKFNVEFFKQFNVVLNGLDNLDARRH 119
           +G+ K+  A DA LK  PQ+ I AH   V    +  FN EF+++ +VV+N LDN++ARR+
Sbjct: 475 IGKPKSYTAADATLKINPQIKIDAHQNRVGPETETIFNDEFYEKLDVVINALDNVEARRY 534

Query: 120 VNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVH 179
           V+  CLA   PL+ESGT G  G   V V   TE Y     P  K  P CT+ S P+   H
Sbjct: 535 VDSRCLAFLKPLLESGTLGTKGNTQVVVPHLTESYGSSRDPPEKEIPFCTLKSFPAAIEH 594

Query: 180 CIVWAKDLLFAKLFGDKNQENDLNVRS-------SDASSSAHAEDV-------FVRRKDE 225
            I WA+D  F  LF  K    +  + S            S H+ +          + K  
Sbjct: 595 TIQWARD-KFEGLFSHKPSLVNKYLSSPSSAEEVLQKIQSGHSREGLEQIIKLLSKEKPR 653

Query: 226 DIDQ---YGRRIYDHVFGYNIE----------VASSNEETWKNRNR-PKPIYSADVMPEN 271
           +  Q   + R  ++  F                 S+    W +  R P P+      P +
Sbjct: 654 NFSQCVEWARLKFEKYFNNKALQLLHCFPLDIRTSTGSPFWSSPKRPPSPLKFDLNEPLH 713

Query: 272 LTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIFLEALKLF----FAKRE- 326
           L         + +   + + A    G+   +    L  S+   L  L       F  R  
Sbjct: 714 L---------SFIQAAAKLYAT-VYGIPFAE--EDL--SADALLNILSEVKIPEFKPRSN 759

Query: 327 --------------------KEIGNL-------------------SFDKDDQLA--VEFV 345
                                 I  L                   SF+KDD     ++F+
Sbjct: 760 KKIQTDETARKPDTAPEDDRNAIFQLEKAILSNEATKSDFRMAPLSFEKDDDHNGHIDFI 819

Query: 346 TAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVL--LKDTDKY 403
           TAA+N+RA ++ I     F+ K IAG I+ A+AT+ A ++GL+ +E IKV       + Y
Sbjct: 820 TAASNLRAKNYSIEPADRFKTKFIAGKIIPAIATSTATVSGLVCLELIKVTDGGYKFEVY 879

Query: 404 RMTY 407
           +  +
Sbjct: 880 KNCF 883

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. Length = 1008

>gnl|CDD|216180 pfam00899, ThiF, ThiF family

 Score =  161 bits (411), Expect = 1e-47
 Identities = 52/133 (39%), Positives = 84/133 (63%), Gaps = 1/133 (0%)

Query: 13  AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVAR 72
           ++VL+VGAGG+G    + LA +G   + ++D DT+E+SNLNRQ LF +S +G+ KA+VA+
Sbjct: 2   SRVLVVGAGGLGSPAAEYLARAGVGKLTLVDFDTVELSNLNRQILFTESDIGKPKAEVAK 61

Query: 73  DAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLV 132
           + +    P + + A+   +  P+   E  K  ++V++ LDN  AR  +N  C+   +PL+
Sbjct: 62  ERLRAINPDVEVEAYPERL-TPENLEELLKGVDLVVDALDNFAARYLLNDACVKRGIPLI 120

Query: 133 ESGTTGFLGQVTV 145
            +G  GF GQVTV
Sbjct: 121 SAGALGFDGQVTV 133

This family contains a repeated domain in ubiquitin activating enzyme E1 and members of the bacterial ThiF/MoeB/HesA family. Length = 134

>gnl|CDD|238766 cd01489, Uba2_SUMO, Ubiquitin activating enzyme (E1) subunit UBA2

 Score =  167 bits (425), Expect = 2e-47
 Identities = 56/103 (54%), Positives = 76/103 (73%), Gaps = 1/103 (0%)

Query: 332 LSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIE 391
           L+FDKDDQ A++FV AAAN+R+  FGI + S F+ K +AGNI+ A+ATTNAIIAGLIV+E
Sbjct: 210 LTFDKDDQDALDFVAAAANLRSHVFGIPMKSRFDIKQMAGNIIPAIATTNAIIAGLIVLE 269

Query: 392 AIKVLLKDTDKYRMTY-CLEHITKKMLLMPVEPYEPNKSCYVC 433
           A+KVL  D ++ R  +  L+   +K LL+P +   PN +CYVC
Sbjct: 270 ALKVLSGDKEQCRTVFLNLQPNRRKRLLVPCKLDPPNPNCYVC 312

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. Length = 312

>gnl|CDD|223552 COG0476, ThiF, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]

 Score =  153 bits (388), Expect = 9e-43
 Identities = 69/172 (40%), Positives = 97/172 (56%), Gaps = 2/172 (1%)

Query: 4   ERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHV 63
               + +K ++VL+VGAGG+G    K LAL+G   + I+D DT+E+SNL RQFLF ++ V
Sbjct: 22  GEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFLFTEADV 81

Query: 64  GQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL 123
           G+ KA+VA  A+ K  P + + A+   + D +   E   QF+VVL+  DN + R  +N  
Sbjct: 82  GKPKAEVAAKALRKLNPLVEVVAYLERL-DEENAEELIAQFDVVLDCTDNFETRYLINDA 140

Query: 124 CLAADVPLVESGTTGFLGQVTVHVKG-KTECYECQPKPAPKTYPVCTITSTP 174
           C+   +PLV  G  GF GQVTV + G KT CY C     P    V T     
Sbjct: 141 CVKLGIPLVHGGAIGFEGQVTVIIPGDKTPCYRCLFPEKPPPGLVPTSCDEA 192

Length = 254

>gnl|CDD|238386 cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA

 Score =  150 bits (382), Expect = 3e-42
 Identities = 61/168 (36%), Positives = 92/168 (54%), Gaps = 2/168 (1%)

Query: 2   VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQS 61
           + E   E +K A+VL+VGAGG+G    + LA +G   + ++D D +E+SNL RQ L  ++
Sbjct: 11  IGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEA 70

Query: 62  HVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVN 121
            VGQ KA+ A + +    P + I A++  + D +   E    +++VL+  DN   R  +N
Sbjct: 71  DVGQPKAEAAAERLRAINPDVEIEAYNERL-DAENAEELIAGYDLVLDCTDNFATRYLIN 129

Query: 122 RLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQ-PKPAPKTYPVC 168
             C+    PLV     GF GQVTV + G+  CY C  P+P P   P C
Sbjct: 130 DACVKLGKPLVSGAVLGFEGQVTVFIPGEGPCYRCLFPEPPPPGVPSC 177

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). . Length = 228

>gnl|CDD|238760 cd01483, E1_enzyme_family, Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

 Score =  133 bits (338), Expect = 5e-37
 Identities = 50/133 (37%), Positives = 82/133 (61%), Gaps = 1/133 (0%)

Query: 14  KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARD 73
           +VL+VG GG+G E+   LA SG   I +ID DT+E+SNLNRQFL RQ+ +G+ KA+VA  
Sbjct: 1   RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAAR 60

Query: 74  AVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVE 133
            + +  P +++TA    + +     +F    ++V++ +DN+  RR +NR C    +P+++
Sbjct: 61  RLNELNPGVNVTAVPEGISEDN-LDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVID 119

Query: 134 SGTTGFLGQVTVH 146
           +G  G  G + V 
Sbjct: 120 AGGLGLGGDIQVI 132

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. Length = 143

>gnl|CDD|180204 PRK05690, PRK05690, molybdopterin biosynthesis protein MoeB; Provisional

 Score =  122 bits (308), Expect = 1e-31
 Identities = 57/151 (37%), Positives = 83/151 (54%), Gaps = 4/151 (2%)

Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
           E +K A+VL+VG GG+GC   + LA +G   + ++D DT+ +SNL RQ L   + +GQ K
Sbjct: 28  EKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPK 87

Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA 127
            + AR A+ +  P ++I   +A + D +         ++VL+  DN+  R  +NR C AA
Sbjct: 88  VESARAALARINPHIAIETINARLDDDELA-ALIAGHDLVLDCTDNVATRNQLNRACFAA 146

Query: 128 DVPLVESGTTG-FLGQVTVHVKGKTE-CYEC 156
             PLV SG      GQVTV      E CY C
Sbjct: 147 KKPLV-SGAAIRMEGQVTVFTYQDDEPCYRC 176

Length = 245

>gnl|CDD|131408 TIGR02355, moeB, molybdopterin synthase sulfurylase MoeB

 Score =  115 bits (289), Expect = 4e-29
 Identities = 53/150 (35%), Positives = 88/150 (58%), Gaps = 2/150 (1%)

Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
           EA+K ++VL+VG GG+GC   + LA +G  ++ ++D DT+ +SNL RQ L   +++GQ K
Sbjct: 20  EALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPK 79

Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA 127
            + A+DA+ +  P ++I   +A + D +       + ++V++  DN++ R  +NR C AA
Sbjct: 80  VESAKDALTQINPHIAINPINAKLDDAELA-ALIAEHDIVVDCTDNVEVRNQLNRQCFAA 138

Query: 128 DVPLVESGTTGFLGQVTVHV-KGKTECYEC 156
            VPLV        GQV+V   +    CY C
Sbjct: 139 KVPLVSGAAIRMEGQVSVFTYQDGEPCYRC 168

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899) [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin]. Length = 240

>gnl|CDD|162820 TIGR02356, adenyl_thiF, thiazole biosynthesis adenylyltransferase ThiF, E

 Score =  113 bits (285), Expect = 6e-29
 Identities = 50/171 (29%), Positives = 79/171 (46%), Gaps = 2/171 (1%)

Query: 2   VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQS 61
           + E   + +  + VL++GAGG+G      LA +G   I I+D D +++SNL RQ LF + 
Sbjct: 11  IGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEE 70

Query: 62  HVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVN 121
            VG+ K +VA   + +    + +TA    V   +         ++VL+  DN   R  +N
Sbjct: 71  DVGRPKVEVAAQRLRELNSDIQVTALKERV-TAENLELLINNVDLVLDCTDNFATRYLIN 129

Query: 122 RLCLAADVPLVESGTTGFLGQV-TVHVKGKTECYECQPKPAPKTYPVCTIT 171
             C+A   PL+ +   GF GQ+      G+  C  C       T P C   
Sbjct: 130 DACVALGTPLISAAVVGFGGQLMVFDPGGEGPCLRCLFPDIADTGPSCATA 180

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]. Length = 202

>gnl|CDD|202124 pfam02134, UBACT, Repeat in ubiquitin-activating (UBA) protein

 Score = 99.5 bits (249), Expect = 1e-25
 Identities = 36/64 (56%), Positives = 50/64 (78%)

Query: 333 SFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEA 392
            FDKDD   ++FV AAAN+RA ++GI     F+ KGIAGNI+ A+ATTNAI+AG++V+E 
Sbjct: 1   EFDKDDDDHLDFVYAAANLRAQNYGIPPADRFDVKGIAGNIIPAIATTNAIVAGIVVLEL 60

Query: 393 IKVL 396
           +K+L
Sbjct: 61  LKIL 64

Length = 66

>gnl|CDD|236337 PRK08762, PRK08762, molybdopterin biosynthesis protein MoeB; Validated

 Score =  108 bits (271), Expect = 1e-25
 Identities = 56/164 (34%), Positives = 78/164 (47%), Gaps = 9/164 (5%)

Query: 13  AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVAR 72
           A+VL++GAGG+G      LA +G   + I+D D ++ SNL RQ L  +  VGQ K   A 
Sbjct: 136 ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAA 195

Query: 73  DAVLKFRPQMSITAHHANVKDPKFNVE-FFKQFNVVLNGLDNLDARRHVNRLCLAADVPL 131
             +    P + + A    V     NVE   +  +VV++G DN   R  +N  C+    PL
Sbjct: 196 QRLAALNPDVQVEAVQERVTSD--NVEALLQDVDVVVDGADNFPTRYLLNDACVKLGKPL 253

Query: 132 VESGTTGFLGQVTVHVKGKTE----CYECQ-PKPAPKTY-PVCT 169
           V      F GQV+V   G+      CY C  P+P P    P C 
Sbjct: 254 VYGAVFRFEGQVSVFDAGRQRGQAPCYRCLFPEPPPPELAPSCA 297

Length = 376

>gnl|CDD|181156 PRK07878, PRK07878, molybdopterin biosynthesis-like protein MoeZ; Validated

 Score =  107 bits (270), Expect = 3e-25
 Identities = 57/158 (36%), Positives = 87/158 (55%), Gaps = 6/158 (3%)

Query: 10  IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAK 69
           +K A+VL++GAGG+G   L  LA +G   + I++ D ++ SNL RQ +  QS VG+SKA+
Sbjct: 40  LKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQ 99

Query: 70  VARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADV 129
            ARD++++  P +++  H   + DP   VE F Q++++L+G DN   R  VN   + A  
Sbjct: 100 SARDSIVEINPLVNVRLHEFRL-DPSNAVELFSQYDLILDGTDNFATRYLVNDAAVLAGK 158

Query: 130 PLVESGTTGFLGQVTV----HVKGKTECYEC-QPKPAP 162
           P V      F GQ +V       G    Y    P+P P
Sbjct: 159 PYVWGSIYRFEGQASVFWEDAPDGLGLNYRDLYPEPPP 196

Length = 392

>gnl|CDD|235528 PRK05600, PRK05600, thiamine biosynthesis protein ThiF; Validated

 Score =  103 bits (258), Expect = 6e-24
 Identities = 48/147 (32%), Positives = 79/147 (53%), Gaps = 1/147 (0%)

Query: 6   QLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQ 65
           Q E +  A+VL++GAGG+GC  +++LA +G   I +ID DT++VSN++RQ LF  S VG+
Sbjct: 35  QQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGR 94

Query: 66  SKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL 125
            K +VA + + + +P + + A    +   +  VE     ++VL+G D+   +  V     
Sbjct: 95  PKVEVAAERLKEIQPDIRVNALRERL-TAENAVELLNGVDLVLDGSDSFATKFLVADAAE 153

Query: 126 AADVPLVESGTTGFLGQVTVHVKGKTE 152
               PLV      F G++ V   G   
Sbjct: 154 ITGTPLVWGTVLRFHGELAVFNSGPDH 180

Length = 370

>gnl|CDD|192635 pfam10585, UBA_e1_thiolCys, Ubiquitin-activating enzyme active site

 Score = 86.5 bits (215), Expect = 3e-21
 Identities = 27/45 (60%), Positives = 30/45 (66%), Gaps = 1/45 (2%)

Query: 150 KTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFG 194
            TECYEC P P  K+ PVCT+ S PS   HCI WA+D LF  LFG
Sbjct: 1   VTECYECSPDPPEKSIPVCTLRSFPSTPEHCIEWARD-LFEGLFG 44

Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin-conjugating enzymes (E2). This domain carries the last of five conserved cysteines that is part of the active site of the enzyme, responsible for ubiquitin thiolester complex formation, the active site being represented by the sequence motif PICTLKNFP. Length = 44

>gnl|CDD|238384 cd00755, YgdL_like, Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

 Score = 92.3 bits (230), Expect = 3e-21
 Identities = 37/132 (28%), Positives = 63/132 (47%)

Query: 7   LEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQS 66
           LE ++ A V +VG GG+G    + LA SG   + +ID D + VSNLNRQ     S VG+ 
Sbjct: 6   LEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKP 65

Query: 67  KAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA 126
           K +V  + +    P+  + A    +             + V++ +D++ A+  +   C  
Sbjct: 66  KVEVMAERIRDINPECEVDAVEEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRK 125

Query: 127 ADVPLVESGTTG 138
             +P++ S   G
Sbjct: 126 RKIPVISSMGAG 137

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. Length = 231

>gnl|CDD|235526 PRK05597, PRK05597, molybdopterin biosynthesis protein MoeB; Validated

 Score = 93.4 bits (232), Expect = 1e-20
 Identities = 57/166 (34%), Positives = 89/166 (53%), Gaps = 7/166 (4%)

Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
           +++  AKV ++GAGG+G   L  LA +G   I IID DT+++SNL+RQ +   + VGQ K
Sbjct: 24  QSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPK 83

Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA 127
           A+ AR+A+L   P + +T     +      ++  +  +V+L+G DN D  RH+     A 
Sbjct: 84  AESAREAMLALNPDVKVTVSVRRL-TWSNALDELRDADVILDGSDNFDT-RHLASWAAAR 141

Query: 128 -DVPLVESGTTGFLGQVTVHVKGKTECYE---CQPKPAPKTYPVCT 169
             +P V +   GF  Q++V   G    YE     P P P + P C+
Sbjct: 142 LGIPHVWASILGFDAQLSVFHAGHGPIYEDLFPTP-PPPGSVPSCS 186

Length = 355

>gnl|CDD|224100 COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

 Score = 90.4 bits (225), Expect = 2e-20
 Identities = 40/138 (28%), Positives = 72/138 (52%)

Query: 1   MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQ 60
           +  E  LE +K A V +VG GG+G   ++ LA SG   I +IDMD + V+N NRQ     
Sbjct: 19  LYGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALL 78

Query: 61  SHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHV 120
             +G+ K +V ++ + +  P+  +TA +  + +        K F+ V++ +D++ A+  +
Sbjct: 79  GDIGKPKVEVMKERIKQINPECEVTAINDFITEENLEDLLSKGFDYVIDAIDSVRAKVAL 138

Query: 121 NRLCLAADVPLVESGTTG 138
              C    +P++ S   G
Sbjct: 139 IAYCRRNKIPVISSMGAG 156

Length = 263

>gnl|CDD|238769 cd01492, Aos1_SUMO, Ubiquitin activating enzyme (E1) subunit Aos1

 Score = 82.0 bits (203), Expect = 5e-18
 Identities = 38/137 (27%), Positives = 70/137 (51%), Gaps = 4/137 (2%)

Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
           + ++ A++L++G  G+G E+ K L LSG   + I+D  T+   +L  QFL     +GQ++
Sbjct: 17  KRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNR 76

Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFN-VVLNGLDNLDARRHVNRLCLA 126
           A+ + + +    P++ ++    ++   +   EFF QF+ VV   L   +  + +N LC  
Sbjct: 77  AEASLERLRALNPRVKVSVDTDDIS--EKPEEFFSQFDVVVATELSRAELVK-INELCRK 133

Query: 127 ADVPLVESGTTGFLGQV 143
             V    +G  G  G V
Sbjct: 134 LGVKFYATGVHGLFGFV 150

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. Length = 197

>gnl|CDD|180967 PRK07411, PRK07411, hypothetical protein; Validated

 Score = 84.8 bits (210), Expect = 1e-17
 Identities = 49/154 (31%), Positives = 75/154 (48%), Gaps = 2/154 (1%)

Query: 10  IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAK 69
           +K A VL +G GG+G  LL  LA +G   I I+D D ++ SNL RQ +   S VG+ K +
Sbjct: 36  LKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIE 95

Query: 70  VARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADV 129
            A++ +L+  P   +  +   +      ++    ++VV++G DN   R  VN  C+  + 
Sbjct: 96  SAKNRILEINPYCQVDLYETRLSSEN-ALDILAPYDVVVDGTDNFPTRYLVNDACVLLNK 154

Query: 130 PLVESGTTGFLGQVTVHVKGKTECYEC-QPKPAP 162
           P V      F GQ TV        Y    P+P P
Sbjct: 155 PNVYGSIFRFEGQATVFNYEGGPNYRDLYPEPPP 188

Length = 390

>gnl|CDD|236320 PRK08644, PRK08644, thiamine biosynthesis protein ThiF; Provisional

 Score = 81.1 bits (201), Expect = 2e-17
 Identities = 48/139 (34%), Positives = 74/139 (53%), Gaps = 6/139 (4%)

Query: 4   ERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHV 63
            + LE +K AKV + GAGG+G  +   LA SG  ++ ++D D +E SNLNRQ  F  S +
Sbjct: 20  PKLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYF-ISQI 78

Query: 64  GQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNV-EFFKQFNVVLNGLDNLDARRH-VN 121
           G  K +  ++ +L+  P + I AH  N K  + N+ E FK  ++V+   DN + +   V 
Sbjct: 79  GMPKVEALKENLLEINPFVEIEAH--NEKIDEDNIEELFKDCDIVVEAFDNAETKAMLVE 136

Query: 122 RLCLAADVPLV-ESGTTGF 139
            +       LV  SG  G+
Sbjct: 137 TVLEHPGKKLVAASGMAGY 155

Length = 212

>gnl|CDD|169382 PRK08328, PRK08328, hypothetical protein; Provisional

 Score = 79.8 bits (197), Expect = 6e-17
 Identities = 60/191 (31%), Positives = 91/191 (47%), Gaps = 20/191 (10%)

Query: 1   MVSERQL---------------EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45
           M+SER+L               E +K AKV +VG GG+G  +   LA +G   I +ID  
Sbjct: 1   MLSERELERYDRQIMIFGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60

Query: 46  TIEVSNLNRQFLFRQSHVGQ-SKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQF 104
           T E+SNLNRQ L  +  +G+  K   A+  + +F   + I      + +   + E  K  
Sbjct: 61  TPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFVGRLSEENID-EVLKGV 119

Query: 105 NVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECY-ECQPKPAPK 163
           +V+++ LDN + R  ++       +PLV     G  GQVT  V GKT+   E  PK   K
Sbjct: 120 DVIVDCLDNFETRYLLDDYAHKKGIPLVHGAVEGTYGQVTTIVPGKTKRLREIFPKVKKK 179

Query: 164 T--YPVCTITS 172
              +P+   T+
Sbjct: 180 KGKFPILGATA 190

Length = 231

>gnl|CDD|238767 cd01490, Ube1_repeat2, Ubiquitin activating enzyme (E1), repeat 2

 Score = 76.9 bits (190), Expect = 5e-15
 Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 23/160 (14%)

Query: 330 GNLSFDKDDQ--LAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGL 387
           G   F+KDD     ++F+TAA+N+RA ++ I      + K IAG I+ A+ATT A + GL
Sbjct: 273 GIPGFEKDDDTNFHMDFITAASNLRARNYSIPPADRHKTKRIAGKIIPAIATTTAAVTGL 332

Query: 388 IVIEAIKVLL--KDTDKYRMTYCLEHITKKMLLMPV----EPYEPNKSCYVCSE--TP-- 437
           + +E  KV+   +  + Y+  +         L +P     EP    K  Y   E  T   
Sbjct: 333 VCLELYKVVDGKRPLEAYKNAFL-------NLALPFFAFSEPIPAPKVKYAYDEEWTIWD 385

Query: 438 -LSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLY 476
              ++   +   L++ +    K K G+   ++  G ++LY
Sbjct: 386 RFEVKGKQT---LQELLIDYFKEKYGLEVTMLSQGVSMLY 422

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1. Length = 435

>gnl|CDD|238764 cd01487, E1_ThiF_like, E1_ThiF_like

 Score = 69.7 bits (171), Expect = 6e-14
 Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 4/128 (3%)

Query: 14  KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARD 73
           KV + GAGG+G  +   LA SG  ++ ++D D +E SNLNRQ  +  S +G+ K +  ++
Sbjct: 1   KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQ-YFLSQIGEPKVEALKE 59

Query: 74  AVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHV-NRLCLAADVPLV 132
            + +  P + I A +  + D       F   ++V+   DN + +  +   L    + P+V
Sbjct: 60  NLREINPFVKIEAINIKI-DENNLEGLFGDCDIVVEAFDNAETKAMLAESLLGNKNKPVV 118

Query: 133 -ESGTTGF 139
             SG  GF
Sbjct: 119 CASGMAGF 126

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. Length = 174

>gnl|CDD|238762 cd01485, E1-1_like, Ubiquitin activating enzyme (E1), repeat 1-like

 Score = 70.5 bits (173), Expect = 6e-14
 Identities = 33/144 (22%), Positives = 66/144 (45%), Gaps = 11/144 (7%)

Query: 7   LEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHV--G 64
              ++ AKVL++GAG +G E+ K L L+G   I I+D   +   +L   F         G
Sbjct: 14  QNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSG 73

Query: 65  QSKAKVARDAVLKFRPQMSITAHHANVKDPKFNV-----EFFKQFNVVLNGLDNLDARRH 119
            ++A  + + + +  P + ++     V++   +      E+ ++F +V+   +N +    
Sbjct: 74  MNRAAASYEFLQELNPNVKLSI----VEEDSLSNDSNIEEYLQKFTLVIATEENYERTAK 129

Query: 120 VNRLCLAADVPLVESGTTGFLGQV 143
           VN +C    +P +   T G +G  
Sbjct: 130 VNDVCRKHHIPFISCATYGLIGYA 153

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologous to the first repeat of Ub-E1. Length = 198

>gnl|CDD|181302 PRK08223, PRK08223, hypothetical protein; Validated

 Score = 70.9 bits (174), Expect = 2e-13
 Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 3/146 (2%)

Query: 2   VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQS 61
           ++  + + ++ ++V + G GG+G   L TLA  G     I D D  E+ N NRQ     S
Sbjct: 17  ITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMS 76

Query: 62  HVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLD--NLDARRH 119
            +G+ KA+V  + V    P++ I A    +     +  F    +V ++GLD    DARR 
Sbjct: 77  TLGRPKAEVLAEMVRDINPELEIRAFPEGIGKENAD-AFLDGVDVYVDGLDFFEFDARRL 135

Query: 120 VNRLCLAADVPLVESGTTGFLGQVTV 145
           V   C    +P + +   G    + V
Sbjct: 136 VFAACQQRGIPALTAAPLGMGTALLV 161

Length = 287

>gnl|CDD|183547 PRK12475, PRK12475, thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

 Score = 71.3 bits (175), Expect = 2e-13
 Identities = 49/183 (26%), Positives = 79/183 (43%), Gaps = 3/183 (1%)

Query: 2   VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQS 61
           + E     I+   VL+VGAG +G    + L  +G   + I D D +E SNL RQ L+ + 
Sbjct: 14  IGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEE 73

Query: 62  HVGQS--KAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRH 119
              Q   KA  A++ + K   ++ I     +V   +   E  K+ +++++  DN D R  
Sbjct: 74  DAKQKKPKAIAAKEHLRKINSEVEIVPVVTDVTVEELE-ELVKEVDLIIDATDNFDTRLL 132

Query: 120 VNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVH 179
           +N L    ++P +  G  G  G     + GKT C  C  +  P     C         V 
Sbjct: 133 INDLSQKYNIPWIYGGCVGSYGVTYTIIPGKTPCLRCLMEHVPVGGATCDTAGIIQPAVQ 192

Query: 180 CIV 182
            +V
Sbjct: 193 IVV 195

Length = 338

>gnl|CDD|185071 PRK15116, PRK15116, sulfur acceptor protein CsdL; Provisional

 Score = 66.4 bits (162), Expect = 4e-12
 Identities = 43/144 (29%), Positives = 74/144 (51%), Gaps = 10/144 (6%)

Query: 4   ERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHV 63
           E+ L+    A + +VG GG+G    + LA +G   I +IDMD + V+N NRQ    + +V
Sbjct: 22  EKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNV 81

Query: 64  GQSKAKVARDAVLKFRPQMSITAHHANVKD---PKFNVEFFKQ-FNVVLNGLDNLDARRH 119
           G +KA+V  + + +  P+  +T     V D   P    E+    F+ V++ +D++  +  
Sbjct: 82  GLAKAEVMAERIRQINPECRVTV----VDDFITPDNVAEYMSAGFSYVIDAIDSVRPKAA 137

Query: 120 VNRLCLAADVPLVESGTTGFLGQV 143
           +   C    +PLV +G  G  GQ+
Sbjct: 138 LIAYCRRNKIPLVTTGGAG--GQI 159

Length = 268

>gnl|CDD|181084 PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

 Score = 66.2 bits (162), Expect = 1e-11
 Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 3/151 (1%)

Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQS- 66
           + ++   VL++GAG +G    + L  +G   + I+D D +E SNL RQ L+ +S V  + 
Sbjct: 20  QKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNL 79

Query: 67  -KAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL 125
            KA  A+  + +    + + A   +V   +   E     +++++  DN + R  VN    
Sbjct: 80  PKAVAAKKRLEEINSDVRVEAIVQDV-TAEELEELVTGVDLIIDATDNFETRFIVNDAAQ 138

Query: 126 AADVPLVESGTTGFLGQVTVHVKGKTECYEC 156
              +P +     G  G     + GKT C  C
Sbjct: 139 KYGIPWIYGACVGSYGLSYTIIPGKTPCLRC 169

Length = 339

>gnl|CDD|162819 TIGR02354, thiF_fam2, thiamine biosynthesis protein ThiF, family 2

 Score = 63.3 bits (154), Expect = 1e-11
 Identities = 32/115 (27%), Positives = 63/115 (54%), Gaps = 2/115 (1%)

Query: 3   SERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSH 62
           + + ++ ++ A V + G GG+G  +   LA +G   + ++D D +E SNLNRQ  ++ S 
Sbjct: 12  TPKIVQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQ-QYKASQ 70

Query: 63  VGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDAR 117
           VG+ K +  ++ + +  P   I A+   + +   + +FFK  ++V    DN +A+
Sbjct: 71  VGEPKTEALKENISEINPYTEIEAYDEKITEENID-KFFKDADIVCEAFDNAEAK 124

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]. Length = 200

>gnl|CDD|238761 cd01484, E1-2_like, Ubiquitin activating enzyme (E1), repeat 2-like

 Score = 63.8 bits (155), Expect = 2e-11
 Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 2/63 (3%)

Query: 331 NLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVI 390
            L +D  + +  +F+  A+N RA+ + I   + F  KG+AG I+ AVATTNA++AG+  +
Sbjct: 174 MLQWDDPEHI--QFIFQASNERASQYNIRGVTYFLTKGVAGRIIPAVATTNAVVAGVCAL 231

Query: 391 EAI 393
           E  
Sbjct: 232 EVF 234

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologous to the second repeat of Ub-E1. Length = 234

>gnl|CDD|238768 cd01491, Ube1_repeat1, Ubiquitin activating enzyme (E1), repeat 1

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 36/147 (24%), Positives = 71/147 (48%), Gaps = 13/147 (8%)

Query: 5   RQL-----EAIK---GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQF 56
           RQL     EA+K    + VL+ G GG+G E+ K L L+G + + + D      S+L+ QF
Sbjct: 4   RQLYVLGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQF 63

Query: 57  LFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDA 116
             R+  +G+++A+ ++  + +  P + +T             +   +F VV+    +L+ 
Sbjct: 64  YLREEDIGKNRAEASQARLAELNPYVPVTVSTG-----PLTTDELLKFQVVVLTDASLED 118

Query: 117 RRHVNRLCLAADVPLVESGTTGFLGQV 143
           +  +N  C +  +  + + T G  G +
Sbjct: 119 QLKINEFCHSPGIKFISADTRGLFGSI 145

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. Length = 286

>gnl|CDD|184853 PRK14851, PRK14851, hypothetical protein; Provisional

 Score = 61.8 bits (150), Expect = 6e-10
 Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 3/141 (2%)

Query: 1   MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQ 60
           + +  + E +  AKV + G GG+G   L T+  +G    HI D D  E  N+NRQF  R 
Sbjct: 32  LFTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARV 91

Query: 61  SHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLD--NLDARR 118
              G+ K  V ++  L   P + IT   A +     +  F    +VVL+GLD    + RR
Sbjct: 92  PSFGRPKLAVMKEQALSINPFLEITPFPAGINADNMDA-FLDGVDVVLDGLDFFQFEIRR 150

Query: 119 HVNRLCLAADVPLVESGTTGF 139
            +  +     +P++ +G  G+
Sbjct: 151 TLFNMAREKGIPVITAGPLGY 171

Length = 679

>gnl|CDD|238770 cd01493, APPBP1_RUB, Ubiquitin activating enzyme (E1) subunit APPBP1

 Score = 60.0 bits (146), Expect = 1e-09
 Identities = 37/158 (23%), Positives = 68/158 (43%), Gaps = 19/158 (12%)

Query: 5   RQL--------EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQF 56
           RQL         A++ A V ++ A   G E+LK L L G     I+D   ++  +L   F
Sbjct: 5   RQLRLWGEHGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNF 64

Query: 57  LFRQSHVGQSKAKVARDAVLKFRPQM--SITAHHANVKDPKF----NVEFFKQFNVVLNG 110
               S +G+S+A+    A  +   ++   +    A  + P+     +  FF QF VV+  
Sbjct: 65  FLDASSLGKSRAE----ATCELLQELNPDVNG-SAVEESPEALLDNDPSFFSQFTVVIAT 119

Query: 111 LDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVK 148
                    +  +  +A++PL+   + G  G + + +K
Sbjct: 120 NLPESTLLRLADVLWSANIPLLYVRSYGLYGYIRIQLK 157

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain. Length = 425

>gnl|CDD|238765 cd01488, Uba3_RUB, Ubiquitin activating enzyme (E1) subunit UBA3

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 8/112 (7%)

Query: 326 EKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIA 385
            KE   +  D DD   +E++   A  RAA F IS  +    +G+   I+ AVA+TNAIIA
Sbjct: 185 PKEFPFVPLDGDDPEHIEWLYQKALERAAQFNISGVTYSLTQGVVKRIIPAVASTNAIIA 244

Query: 386 GLIVIEAIKV---LLKDTDKYRMTYCLEHITKKMLLMPVEPYEPNKSCYVCS 434
               +EA+K+     ++ + Y M   ++             +E  + C VCS
Sbjct: 245 AACCLEALKIATDCYENLNNYLMYNGVDGC-----YTYTFEHERKEDCPVCS 291

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. Length = 291

>gnl|CDD|184854 PRK14852, PRK14852, hypothetical protein; Provisional

 Score = 59.3 bits (143), Expect = 4e-09
 Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 3/139 (2%)

Query: 13  AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVAR 72
           ++V + G GG+G   L TLA +G  + ++ D D     NLNRQ+    +  G+ K  V  
Sbjct: 333 SRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMT 392

Query: 73  DAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLD--NLDARRHVNRLCLAADVP 130
           +  L   P + I +    V     +  F K  +++++G+D   LD RR +    L   +P
Sbjct: 393 ERALSVNPFLDIRSFPEGVAAETIDA-FLKDVDLLVDGIDFFALDIRRRLFNRALELGIP 451

Query: 131 LVESGTTGFLGQVTVHVKG 149
           ++ +G  G+   + V + G
Sbjct: 452 VITAGPLGYSCALLVFMPG 470

Length = 989

>gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1

 Score = 53.4 bits (128), Expect = 2e-07
 Identities = 39/169 (23%), Positives = 76/169 (44%), Gaps = 8/169 (4%)

Query: 15  VLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDA 74
           VL+ G GG+G E+ K L L+G + + + D +  +  +L+  F   +  VG+++A+     
Sbjct: 27  VLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAVVKK 86

Query: 75  VLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPL--V 132
           + +  P +     H +     FN EF  +F  V+    +L  ++ +N  C +   P+  +
Sbjct: 87  LAELNPYV-----HVSSSSVPFNEEFLDKFQCVVLTEMSLPLQKEINDFCHSQCPPIAFI 141

Query: 133 ESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCI 181
            +   G  G +      + E  +   +  PKT  + +IT      V C+
Sbjct: 142 SADVRGLFGSLFCDFGDEFEVLDTDGE-EPKTGFIASITQANPGIVTCL 189

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. Length = 1008

>gnl|CDD|233388 TIGR01381, E1_like_apg7, E1-like protein-activating enzyme Gsa7p/Apg7p

 Score = 51.9 bits (124), Expect = 7e-07
 Identities = 40/144 (27%), Positives = 59/144 (40%), Gaps = 19/144 (13%)

Query: 4   ERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHV 63
           + QLE     KVL++GAG +GC + + L   G + I  +D   +  SN  RQ L      
Sbjct: 330 DLQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVRQSLSNFEDC 389

Query: 64  ---GQSKAKVARDAVLKFRPQMSITAHHANV----------------KDPKFNVEFFKQF 104
              G+ KA+ A+ A+ +  P +  T H   V                KD     +  K  
Sbjct: 390 LLGGRGKAETAQKALKRIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDH 449

Query: 105 NVVLNGLDNLDARRHVNRLCLAAD 128
           +VV   LD+ +AR     LC    
Sbjct: 450 DVVFLLLDSREARWLPTVLCSRHK 473

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. Length = 664

>gnl|CDD|238763 cd01486, Apg7, Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

 Score = 44.7 bits (106), Expect = 7e-05
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 2/76 (2%)

Query: 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHV--GQSKAKVA 71
          K L++GAG +GC + + L   G + I  +D   +  SN  RQ LF       G+ KA+ A
Sbjct: 1  KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAA 60

Query: 72 RDAVLKFRPQMSITAH 87
           + + +  P +  T  
Sbjct: 61 AERLKEIFPSIDATGI 76

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. Length = 307

>gnl|CDD|163448 TIGR03736, PRTRC_ThiF, PRTRC system ThiF family protein

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 26/120 (21%)

Query: 14  KVLMVGAGGIGCEL----------LKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHV 63
            V++VGAGG G ++          LK L   G   + + D DT+  +N+ RQ  F  + V
Sbjct: 13  SVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQ-AFYPADV 71

Query: 64  GQSKAKVARDAVLKFRPQMSI----TAHHANVKDPKFNVE-FFKQFNVVLNGLDNLDARR 118
           GQ+KA      VL  R   ++    TAH       +        + ++V+  +DN  AR 
Sbjct: 72  GQNKA-----IVLVNRLNQAMGTDWTAHPE-----RVERSSTLHRPDIVIGCVDNRAARL 121

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein. Length = 244

>gnl|CDD|216527 pfam01488, Shikimate_DH, Shikimate / quinate 5-dehydrogenase

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 4  ERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHII 42
          ++    +KG KVL++GAG +     K L   G + I I 
Sbjct: 4  KKIFGDLKGKKVLLIGAGEMARLAAKHLLSKGAKKITIA 42

This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyzes the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyzes the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate. Length = 133

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	563
KOG2013	603	consensus SMT3/SUMO-activating complex, catalytic	100.0
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	100.0
KOG2012	1013	consensus Ubiquitin activating enzyme UBA1 [Posttr	100.0
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	100.0
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	100.0
KOG2015	422	consensus NEDD8-activating complex, catalytic comp	100.0
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	100.0
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	100.0
PRK08223	287	hypothetical protein; Validated	100.0
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	100.0
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	100.0
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	100.0
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	100.0
PRK07411	390	hypothetical protein; Validated	100.0
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	100.0
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	100.0
PRK08328	231	hypothetical protein; Provisional	100.0
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	100.0
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	100.0
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	100.0
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	100.0
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	100.0
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	100.0
COG0476	254	ThiF Dinucleotide-utilizing enzymes involved in mo	99.98
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	99.97
cd01493	425	APPBP1_RUB Ubiquitin activating enzyme (E1) subuni	99.97
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	99.97
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	99.97
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	99.97
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	99.97
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	99.97
PRK14851	679	hypothetical protein; Provisional	99.97
PRK14852	989	hypothetical protein; Provisional	99.96
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	99.96
KOG2017	427	consensus Molybdopterin synthase sulfurylase [Coen	99.96
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	99.96
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	99.95
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	99.95
PRK15116	268	sulfur acceptor protein CsdL; Provisional	99.95
PRK07877	722	hypothetical protein; Provisional	99.95
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	99.94
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	99.94
TIGR03603	318	cyclo_dehy_ocin bacteriocin biosynthesis cyclodehy	99.93
PRK06153	393	hypothetical protein; Provisional	99.92
PF02134	67	UBACT: Repeat in ubiquitin-activating (UBA) protei	99.91
KOG2336	422	consensus Molybdopterin biosynthesis-related prote	99.89
KOG2014	331	consensus SMT3/SUMO-activating complex, AOS1/RAD31	99.87
PTZ00245	287	ubiquitin activating enzyme; Provisional	99.87
KOG2012	1013	consensus Ubiquitin activating enzyme UBA1 [Posttr	99.85
KOG2018	430	consensus Predicted dinucleotide-utilizing enzyme	99.8
KOG2016	523	consensus NEDD8-activating complex, APP-BP1/UBA5 c	99.79
KOG2337	669	consensus Ubiquitin activating E1 enzyme-like prot	99.74
PF10585	45	UBA_e1_thiolCys: Ubiquitin-activating enzyme activ	99.52
TIGR03693	637	ocin_ThiF_like putative thiazole-containing bacter	99.51
PF14732	87	UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquiti	99.28
PF09358	125	UBA_e1_C: Ubiquitin-activating enzyme e1 C-termina	99.13
PF08825	84	E2_bind: E2 binding domain; InterPro: IPR014929 E1	98.36
TIGR03882	193	cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydr	98.04
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.84
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	97.73
COG4015	217	Predicted dinucleotide-utilizing enzyme of the Thi	97.66
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.62
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.61
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.5
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.35
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.22
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	97.02
PRK06719	157	precorrin-2 dehydrogenase; Validated	97.02
PRK05562	223	precorrin-2 dehydrogenase; Provisional	96.86
PRK12548	289	shikimate 5-dehydrogenase; Provisional	96.63
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	96.52
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	96.5
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	96.42
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	96.28
PRK13940	414	glutamyl-tRNA reductase; Provisional	96.21
PRK04148	134	hypothetical protein; Provisional	96.19
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.16
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	96.02
COG0569	225	TrkA K+ transport systems, NAD-binding component [	95.99
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	95.87
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	95.83
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.82
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.73
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.61
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.57
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	95.53
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	95.52
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	95.44
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	95.39
PRK10637	457	cysG siroheme synthase; Provisional	95.34
KOG4169	261	consensus 15-hydroxyprostaglandin dehydrogenase an	95.25
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	95.24
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	95.01
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	94.97
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	94.93
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	94.79
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	94.78
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	94.73
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	94.72
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	94.71
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	94.61
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	94.55
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.54
PTZ00082	321	L-lactate dehydrogenase; Provisional	94.52
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	94.43
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	94.23
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	94.17
PLN00203	519	glutamyl-tRNA reductase	94.11
PRK07063	260	short chain dehydrogenase; Provisional	94.11
PRK06197	306	short chain dehydrogenase; Provisional	94.01
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	93.9
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	93.89
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	93.79
PLN03209	576	translocon at the inner envelope of chloroplast su	93.78
PRK05854	313	short chain dehydrogenase; Provisional	93.78
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	93.76
PRK09242	257	tropinone reductase; Provisional	93.7
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.63
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.63
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	93.62
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.62
PRK00048	257	dihydrodipicolinate reductase; Provisional	93.56
PLN02240	352	UDP-glucose 4-epimerase	93.52
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	93.52
PF05237	84	MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 T	93.51
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	93.49
PRK09496	453	trkA potassium transporter peripheral membrane com	93.44
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	93.38
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	93.24
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	93.23
PLN02427	386	UDP-apiose/xylose synthase	93.21
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	93.18
PRK08251	248	short chain dehydrogenase; Provisional	93.15
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	93.11
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.08
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	93.06
PLN02602	350	lactate dehydrogenase	93.04
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	92.97
PRK13403	335	ketol-acid reductoisomerase; Provisional	92.97
PRK08618	325	ornithine cyclodeaminase; Validated	92.91
PRK14982	340	acyl-ACP reductase; Provisional	92.86
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	92.85
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	92.8
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	92.77
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	92.74
PRK07523	255	gluconate 5-dehydrogenase; Provisional	92.72
PRK07831	262	short chain dehydrogenase; Provisional	92.7
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	92.7
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.67
PRK05875	276	short chain dehydrogenase; Provisional	92.64
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	92.54
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	92.47
PRK07062	265	short chain dehydrogenase; Provisional	92.44
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	92.4
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	92.38
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	92.31
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	92.14
PRK06141	314	ornithine cyclodeaminase; Validated	92.13
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	92.07
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	91.98
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	91.96
PRK05867	253	short chain dehydrogenase; Provisional	91.92
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	91.9
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	91.87
PRK05866	293	short chain dehydrogenase; Provisional	91.87
PRK09186	256	flagellin modification protein A; Provisional	91.85
PRK07340	304	ornithine cyclodeaminase; Validated	91.83
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	91.82
PRK08339	263	short chain dehydrogenase; Provisional	91.75
PRK06194	287	hypothetical protein; Provisional	91.64
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	91.59
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	91.55
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	91.55
PRK07576	264	short chain dehydrogenase; Provisional	91.46
PRK07417	279	arogenate dehydrogenase; Reviewed	91.44
PRK08655	437	prephenate dehydrogenase; Provisional	91.41
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	91.39
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	91.33
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	91.3
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	91.2
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	91.15
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	91.09
PRK11730	715	fadB multifunctional fatty acid oxidation complex	91.07
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	91.04
COG0300	265	DltE Short-chain dehydrogenases of various substra	91.02
PRK09496	453	trkA potassium transporter peripheral membrane com	90.98
PRK08291	330	ectoine utilization protein EutC; Validated	90.92
PLN02206	442	UDP-glucuronate decarboxylase	90.88
PTZ00325	321	malate dehydrogenase; Provisional	90.86
PRK06223	307	malate dehydrogenase; Reviewed	90.85
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	90.84
PTZ00117	319	malate dehydrogenase; Provisional	90.83
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	90.83
CHL00194	317	ycf39 Ycf39; Provisional	90.79
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	90.76
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	90.76
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	90.75
PLN02253	280	xanthoxin dehydrogenase	90.73
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	90.71
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	90.67
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	90.6
PRK06940	275	short chain dehydrogenase; Provisional	90.59
PRK07478	254	short chain dehydrogenase; Provisional	90.58
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	90.56
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	90.56
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	90.46
PRK07814	263	short chain dehydrogenase; Provisional	90.42
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	90.4
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	90.37
PRK06181	263	short chain dehydrogenase; Provisional	90.37
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	90.33
PRK10675	338	UDP-galactose-4-epimerase; Provisional	90.26
PRK07453	322	protochlorophyllide oxidoreductase; Validated	90.2
PRK06138	252	short chain dehydrogenase; Provisional	90.02
PRK12939	250	short chain dehydrogenase; Provisional	89.98
PLN02653	340	GDP-mannose 4,6-dehydratase	89.97
PRK08277	278	D-mannonate oxidoreductase; Provisional	89.93
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	89.9
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	89.9
PLN02695	370	GDP-D-mannose-3',5'-epimerase	89.89
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	89.87
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	89.82
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	89.82
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.78
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	89.72
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	89.68
PRK06172	253	short chain dehydrogenase; Provisional	89.67
PLN02214	342	cinnamoyl-CoA reductase	89.67
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	89.66
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	89.64
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	89.64
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	89.57
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	89.57
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	89.53
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	89.51
PRK07024	257	short chain dehydrogenase; Provisional	89.49
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	89.45
PRK07680	273	late competence protein ComER; Validated	89.34
PRK12829	264	short chain dehydrogenase; Provisional	89.27
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	89.25
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	89.24
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	89.23
PRK05876	275	short chain dehydrogenase; Provisional	89.22
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	89.19
PRK03562	621	glutathione-regulated potassium-efflux system prot	89.06
PRK07326	237	short chain dehydrogenase; Provisional	89.01
PLN02572	442	UDP-sulfoquinovose synthase	88.98
PRK05872	296	short chain dehydrogenase; Provisional	88.91
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	88.9
PLN02166	436	dTDP-glucose 4,6-dehydratase	88.85
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	88.85
PLN02650	351	dihydroflavonol-4-reductase	88.81
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	88.8
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	88.73
PRK13304	265	L-aspartate dehydrogenase; Reviewed	88.72
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	88.7
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	88.7
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	88.63
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	88.61
PRK12367	245	short chain dehydrogenase; Provisional	88.54
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	88.41
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	88.4
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	88.37
PRK07035	252	short chain dehydrogenase; Provisional	88.26
PRK12744	257	short chain dehydrogenase; Provisional	88.25
PRK03659	601	glutathione-regulated potassium-efflux system prot	88.2
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	88.17
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	88.13
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	88.11
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	88.09
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	88.07
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	88.06
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	88.06
PRK06949	258	short chain dehydrogenase; Provisional	88.02
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	88.0
PRK06196	315	oxidoreductase; Provisional	87.98
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	87.97
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	87.92
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	87.9
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	87.89
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	87.85
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	87.83
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	87.8
PLN02896	353	cinnamyl-alcohol dehydrogenase	87.79
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	87.75
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	87.67
PRK06545	359	prephenate dehydrogenase; Validated	87.63
PRK08265	261	short chain dehydrogenase; Provisional	87.51
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	87.48
PRK06125	259	short chain dehydrogenase; Provisional	87.44
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	87.4
PRK08213	259	gluconate 5-dehydrogenase; Provisional	87.36
PRK05855	582	short chain dehydrogenase; Validated	87.35
PRK07074	257	short chain dehydrogenase; Provisional	87.34
PRK07774	250	short chain dehydrogenase; Provisional	87.33
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	87.33
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	87.31
PRK06124	256	gluconate 5-dehydrogenase; Provisional	87.3
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	87.29
PRK12827	249	short chain dehydrogenase; Provisional	87.25
PRK07102	243	short chain dehydrogenase; Provisional	87.25
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	87.22
PRK07109	334	short chain dehydrogenase; Provisional	87.2
PLN02780	320	ketoreductase/ oxidoreductase	87.19
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	87.18
PRK06139	330	short chain dehydrogenase; Provisional	87.16
PTZ00431	260	pyrroline carboxylate reductase; Provisional	87.14
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	87.12
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	87.11
PRK09072	263	short chain dehydrogenase; Provisional	87.06
PRK07806	248	short chain dehydrogenase; Provisional	87.04
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	87.02
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	86.99
PRK13018	378	cell division protein FtsZ; Provisional	86.94
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	86.94
PRK08643	256	acetoin reductase; Validated	86.91
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	86.89
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	86.86
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	86.86
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	86.78
PRK06523	260	short chain dehydrogenase; Provisional	86.78
PRK08589	272	short chain dehydrogenase; Validated	86.7
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	86.67
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	86.62
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	86.56
PRK06114	254	short chain dehydrogenase; Provisional	86.55
PRK06198	260	short chain dehydrogenase; Provisional	86.54
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	86.32
PRK10538	248	malonic semialdehyde reductase; Provisional	86.32
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	86.27
PRK08324	681	short chain dehydrogenase; Validated	86.25
PLN02688	266	pyrroline-5-carboxylate reductase	86.17
PRK08306	296	dipicolinate synthase subunit A; Reviewed	86.16
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	86.15
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	86.12
PRK08226	263	short chain dehydrogenase; Provisional	86.1
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	86.08
PRK07677	252	short chain dehydrogenase; Provisional	86.08
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	86.0
PRK10669	558	putative cation:proton antiport protein; Provision	86.0
PRK07097	265	gluconate 5-dehydrogenase; Provisional	85.96
PRK07856	252	short chain dehydrogenase; Provisional	85.89
PLN00198	338	anthocyanidin reductase; Provisional	85.74
PRK08085	254	gluconate 5-dehydrogenase; Provisional	85.73
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	85.68
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	85.65
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	85.63
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	85.62
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	85.6
PRK05717	255	oxidoreductase; Validated	85.48
PRK09330	384	cell division protein FtsZ; Validated	85.47
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	85.41
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	85.34
PRK13243	333	glyoxylate reductase; Reviewed	85.32
TIGR00065	349	ftsZ cell division protein FtsZ. This family consi	85.21
PRK06567	1028	putative bifunctional glutamate synthase subunit b	85.2
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	85.2
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	85.19
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	85.17
PRK07890	258	short chain dehydrogenase; Provisional	85.15
PLN02503	605	fatty acyl-CoA reductase 2	85.12
PRK08278	273	short chain dehydrogenase; Provisional	85.05
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	84.96
PRK08340	259	glucose-1-dehydrogenase; Provisional	84.92
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	84.82
TIGR00036	266	dapB dihydrodipicolinate reductase.	84.81
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	84.79
PLN02852	491	ferredoxin-NADP+ reductase	84.76
PRK08818	370	prephenate dehydrogenase; Provisional	84.76
PRK12480	330	D-lactate dehydrogenase; Provisional	84.73
PRK15076	431	alpha-galactosidase; Provisional	84.71
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	84.66
PRK06914	280	short chain dehydrogenase; Provisional	84.65
PRK05479	330	ketol-acid reductoisomerase; Provisional	84.64
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	84.6
PLN02383	344	aspartate semialdehyde dehydrogenase	84.59
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	84.58
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	84.56
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	84.49
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	84.48
PRK06128	300	oxidoreductase; Provisional	84.34
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	84.32
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	84.29
PRK07067	257	sorbitol dehydrogenase; Provisional	84.24
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	83.97
PRK08374	336	homoserine dehydrogenase; Provisional	83.93
PLN02928	347	oxidoreductase family protein	83.91
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	83.9
cd02201	304	FtsZ_type1 FtsZ is a GTPase that is similar to the	83.89
PRK07454	241	short chain dehydrogenase; Provisional	83.88
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	83.86
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	83.83
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	83.82
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	83.79
PLN00016	378	RNA-binding protein; Provisional	83.76
PRK05884	223	short chain dehydrogenase; Provisional	83.7
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	83.61
PRK00811	283	spermidine synthase; Provisional	83.59
PRK10537	393	voltage-gated potassium channel; Provisional	83.56
PRK12862	763	malic enzyme; Reviewed	83.54
TIGR01746	367	Thioester-redct thioester reductase domain. It has	83.52
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	83.51
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	83.49
PRK15059	292	tartronate semialdehyde reductase; Provisional	83.46
COG0281	432	SfcA Malic enzyme [Energy production and conversio	83.43
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	83.35
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	83.35
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	83.35
PRK08267	260	short chain dehydrogenase; Provisional	83.3
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	83.25
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	83.23
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	83.21
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	83.16
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	83.15
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	83.13
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	83.12
PLN02256	304	arogenate dehydrogenase	83.07
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	82.98
PRK08936	261	glucose-1-dehydrogenase; Provisional	82.92
PRK12746	254	short chain dehydrogenase; Provisional	82.85
PRK12937	245	short chain dehydrogenase; Provisional	82.8
PRK06182	273	short chain dehydrogenase; Validated	82.76
PLN02494	477	adenosylhomocysteinase	82.71
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	82.7
PRK09291	257	short chain dehydrogenase; Provisional	82.66
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	82.6
PRK08862	227	short chain dehydrogenase; Provisional	82.59
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	82.59
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	82.59
PRK06701	290	short chain dehydrogenase; Provisional	82.58
PRK06057	255	short chain dehydrogenase; Provisional	82.51
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	82.49
TIGR03603	318	cyclo_dehy_ocin bacteriocin biosynthesis cyclodehy	82.47
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	82.41
PRK08300	302	acetaldehyde dehydrogenase; Validated	82.37
PRK06046	326	alanine dehydrogenase; Validated	82.3
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	82.29
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	82.22
PRK08264	238	short chain dehydrogenase; Validated	82.14
PRK07904	253	short chain dehydrogenase; Provisional	82.12
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	82.01
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	81.94
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	81.9
PRK06720	169	hypothetical protein; Provisional	81.88
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	81.87
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	81.85
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	81.76
PRK06841	255	short chain dehydrogenase; Provisional	81.75
PTZ00075	476	Adenosylhomocysteinase; Provisional	81.73
PRK06398	258	aldose dehydrogenase; Validated	81.7
PRK08303	305	short chain dehydrogenase; Provisional	81.65
PRK05650	270	short chain dehydrogenase; Provisional	81.64
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	81.57
PLN00106	323	malate dehydrogenase	81.57
PRK07791	286	short chain dehydrogenase; Provisional	81.4
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	81.36
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	81.3
TIGR02415	254	23BDH acetoin reductases. One member of this famil	81.29
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	81.25
PF11543	80	UN_NPL4: Nuclear pore localisation protein NPL4; I	81.21
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	81.19
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	81.17
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	81.16
PRK06270	341	homoserine dehydrogenase; Provisional	81.08
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	81.04
PRK07201	657	short chain dehydrogenase; Provisional	81.0
PRK13303	265	L-aspartate dehydrogenase; Provisional	80.66
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	80.62
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	80.56
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	80.4
PRK08628	258	short chain dehydrogenase; Provisional	80.31
PRK07574	385	formate dehydrogenase; Provisional	80.27
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	80.26
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	80.15
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	80.08
PRK12859	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	80.08
PRK06487	317	glycerate dehydrogenase; Provisional	80.05
PRK12814	652	putative NADPH-dependent glutamate synthase small	80.03

>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.1e-117  Score=913.95  Aligned_cols=488  Identities=51%  Similarity=0.819  Sum_probs=423.3

Q ss_pred             CCCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC
Q 008516            1 MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP   80 (563)
Q Consensus         1 ~~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np   80 (563)
                      |.+.+.++.+.++|||||||||||||++|+|+++|+++|||||+|||++||||||||||.+|||++||.+|++.++++||
T Consensus         1 ~~~~~~~eai~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnp   80 (603)
T KOG2013|consen    1 MSPREKHEAIKSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNP   80 (603)
T ss_pred             CchHHHHHHhccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCC
Confidence            67888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCCCccccccCCC
Q 008516           81 QMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKP  160 (563)
Q Consensus        81 ~v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~Cy~C~~~~  160 (563)
                      ++++.+++.+|++..|+.+||++||+|++|+||.+||+|+|++|..+++|+|++||.||.|||+++++|.|+||+|.++|
T Consensus        81 n~~l~~yhanI~e~~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C~~a~vPLIesGt~Gf~GQv~~ii~GkTECyeC~pK~  160 (603)
T KOG2013|consen   81 NIKLVPYHANIKEPKFNVEFFRQFDIVLNALDNLAARRYVNRMCLAASVPLIESGTGGFLGQVQVIIKGKTECYECIPKP  160 (603)
T ss_pred             CCceEeccccccCcchHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCceecCcccccceEEEEecCCcceecccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCceeeccCCCCchhHHHHHHHHHHHHHhCCCCcccccccCCccc--c---------chhhhhhhhhcCCchhHHH
Q 008516          161 APKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDA--S---------SSAHAEDVFVRRKDEDIDQ  229 (563)
Q Consensus       161 ~~~~~p~cti~~~p~~~~hci~~a~~~lf~~lf~~~~~~~~~~~~~~~~--~---------~~~~~~~~~~~~~~~~~~~  229 (563)
                      +|++||+|||||+|++++|||+|||+++|+++|++.....+.....++.  .         .....+++.+++  ++..+
T Consensus       161 ~~kTypvCTIRstPS~~iHCIVWAK~~lF~qlF~~d~~~q~~~~d~~d~d~~e~~t~~~~~~~~et~d~~Er~--~~i~~  238 (603)
T KOG2013|consen  161 VPKTYPVCTIRSTPSEPIHCIVWAKHYLFNQLFGEDDDDQYGRHDNADPDNCEDMTEEEAEAFRETEDLKERR--ESIVE  238 (603)
T ss_pred             CCCcCCceEeecCCCCceeeeeehHhHHHHHHhccccccccccccccCchhhhccChhhhhhhccchHHHHHH--HHHHH
Confidence            9999999999999999999999999989999999754432111111111  0         011112222222  23344


Q ss_pred             HH-------HHHhhhhhhccHHHHhcCCcccCCCCCCCccccCCCCCcchhhhcccccccccccchhhhHHhhcCCCCCC
Q 008516          230 YG-------RRIYDHVFGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQ  302 (563)
Q Consensus       230 ~a-------~~~f~~~F~~~I~~ll~~~~~W~~~~~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (563)
                      |.       ..+|+++|.+||++|+.|+..|+.|++|.||+|.+.........+..           .. +.--...++|
T Consensus       239 ~~~~~~~~~~~i~~klF~~dI~yl~~~e~~wk~r~~p~pl~~~~~i~~~~~t~ns~-----------~q-~~~~a~~~~~  306 (603)
T KOG2013|consen  239 IDKNLDFGPFKIFNKLFIYDIEYLLGMEALWKPRSRPVPLSIAEVISTSLETINSI-----------VQ-SITSAQLNDQ  306 (603)
T ss_pred             HhhccCCChhhhhhHHHHHHHHHHHhhhhhccCCCCCCCcchhhccCCccccccch-----------hh-hccccccCCc
Confidence            43       56899999999999999999999999999999986654433221110           00 0111235689


Q ss_pred             CccccccchHHHHHHHHHHHHhhhhccCC--cccCCCcHhHHHHHHHHHHHHHHHcCCCCCCHHHHHhhhcccccchhhH
Q 008516          303 DTWTLLESSRIFLEALKLFFAKREKEIGN--LSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATT  380 (563)
Q Consensus       303 ~~~s~~e~~~~f~~~~~~l~~~~~~~~~~--l~FdKDDd~h~dFV~AasNLRA~~f~I~~~s~~~~K~iAGnIIPAIATT  380 (563)
                      .+|+++++..+|..+++.+..+..+....  +.|||||.+.|+||+||||+||+.|+||++|.|++|+||||||||||||
T Consensus       307 ~v~~v~~~~~vf~~~i~~l~~~~~~~~~h~~l~fdKdd~~~~~FVaaaaNiRa~if~ipmkS~Fdik~mAgnIipaIAtT  386 (603)
T KOG2013|consen  307 NVWTVDEGAVVFRLSIQALDLRCPKESDHWYLIFDKDDASTMEFVAAAANIRAHIFGIPMKSLFDIKQMAGNIIPAIATT  386 (603)
T ss_pred             ceeeeccccHHHHHHHHHhcccCCccCCCceEEEcCCcHHHHHHHHHHhhhhhhhhccchhhhhchHhHhcccchhhhhh
Confidence            99999999999999999986665554454  8999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCccccceeeecccc-cccccccccCCCCCCCCcccCCCccEEEEEcCCCCCHHHHHHHHHHH
Q 008516          381 NAIIAGLIVIEAIKVLLKDTDKYRMTYCLEHI-TKKMLLMPVEPYEPNKSCYVCSETPLSLEINTSRSKLRDFVEKIVKA  459 (563)
Q Consensus       381 nAiVAGl~vlE~~K~l~~~~~~~r~~f~~~~~-~~~~~~~p~~~~~pn~~C~vC~~~~~~l~i~~~~~TL~~li~~~lk~  459 (563)
                      ||||||++|+|++|+|+|....++++|+..++ .+++++.|..+.||||+||||+...+.++++...+||++|+|.++|.
T Consensus       387 NAiIagliv~eaiKvl~~~~~~~~~~f~~~~~n~r~r~l~~~~~~~PNp~C~vCs~~~~~l~ln~~~~~~~~L~D~ivk~  466 (603)
T KOG2013|consen  387 NAIIAGLIVTEAIKVLGGDFDDCNMIFLAKRPNPRKRVLLPWALRPPNPNCPVCSEVPLVLELNTRKSTLRDLVDKIVKT  466 (603)
T ss_pred             hhHHHHHHHHHHHHHhccchhcceeeEEccCCCccceeecccccCCCCCCCccccccceEEEeccccchHHHHHHHHHHH
Confidence            99999999999999999999999999998883 37889999999999999999999889999999999999999999999


Q ss_pred             hcCCCcCeEEe-cCeEEEeeCCCchHHHHHHhhhhhhcchhhhcCcccCCCcceeec
Q 008516          460 KLGINFPLIMH-GSNLLYEVGDDLDEVEVANYAANLEKVKIQASSVTLCSSPPDFCC  515 (563)
Q Consensus       460 ~~~l~~~~i~~-g~~~LY~~~~~~~~~~~~~~~~nl~k~L~el~~gv~~g~~~~~~~  515 (563)
                      +++| .|.|+. ...++|+.          .|++|++|+|+||  |+.+|++..+..
T Consensus       467 r~~~-~pdvsll~~~Li~~~----------d~e~n~~k~lsel--~i~ngsli~~~~  510 (603)
T KOG2013|consen  467 RLGY-LPDVSLLDDDLIDDM----------DFEDNLDKTLSEL--GILNGSLINVKD  510 (603)
T ss_pred             Hhcc-Ccccchhhhhhcccc----------cchhhhhhhHHhh--CCCCCceEeeec
Confidence            9999 777765 34566654          2789999999999  899999765554

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=100.00  E-value=3.2e-101  Score=891.81  Aligned_cols=514  Identities=29%  Similarity=0.414  Sum_probs=410.0

Q ss_pred             CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCC-----CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHH
Q 008516            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGF-----QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVL   76 (563)
Q Consensus         2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gv-----g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~   76 (563)
                      +++++|++|+++||+||||||+|||++|+|+++||     |+|+|+|+|+|+.|||||||||+.+|||++||++|+++++
T Consensus       409 ~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk~Ka~vaa~~l~  488 (1008)
T TIGR01408       409 FGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIGKPKSYTAADATL  488 (1008)
T ss_pred             cCHHHHHHHhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHcCcHHHHHHHHHHH
Confidence            67899999999999999999999999999999999     8999999999999999999999999999999999999999


Q ss_pred             hhCCCceEEEeccCCCC---CcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCCCcc
Q 008516           77 KFRPQMSITAHHANVKD---PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTEC  153 (563)
Q Consensus        77 ~~np~v~I~~~~~~i~~---~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~C  153 (563)
                      ++||+++|+++..++..   ..++.+||+++|+|++|+||.++|.++|++|+.+++|+|++|+.|++|++++++|+.|+|
T Consensus       489 ~~Np~v~I~~~~~~v~~~~e~i~~~~f~~~~dvVi~alDn~~aR~~vn~~c~~~~iPli~~gt~G~~G~v~v~ip~~te~  568 (1008)
T TIGR01408       489 KINPQIKIDAHQNRVGPETETIFNDEFYEKLDVVINALDNVEARRYVDSRCLAFLKPLLESGTLGTKGNTQVVVPHLTES  568 (1008)
T ss_pred             HHCCCCEEEEEEeecChhhhhhhhHHHhhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccCceeeEEEEeCCCcCC
Confidence            99999999999999843   356788999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCCCCceeeccCCCCchhHHHHHHHHHHHHHhCCCCccc-ccccCC------------ccc-cchhhhhhhh
Q 008516          154 YECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQEN-DLNVRS------------SDA-SSSAHAEDVF  219 (563)
Q Consensus       154 y~C~~~~~~~~~p~cti~~~p~~~~hci~~a~~~lf~~lf~~~~~~~-~~~~~~------------~~~-~~~~~~~~~~  219 (563)
                      |+|.++|+++++|+|||+++|+.++|||+||++ +|+.+|++..+.. .+...+            ... ..++.+.+.+
T Consensus       569 y~~~~d~~~~~~P~Ctl~~~P~~~~h~i~wa~~-~f~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l  647 (1008)
T TIGR01408       569 YGSSRDPPEKEIPFCTLKSFPAAIEHTIQWARD-KFEGLFSHKPSLVNKYLSSPSSAEEVLQKIQSGHSREGLEQIIKLL  647 (1008)
T ss_pred             CCCCCCCCCCCCCcccccCCCCCchHHHHHHHH-HHHHHHHhhHHHHHHHhhChHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            999999999999999999999999999999999 8999999765532 111111            000 0123333333


Q ss_pred             ---hcCCchhHHHHHHHHhhhhhhccHHHHhcC----------CcccCC-CCCCCccccCCC--CCcchhhhcccccccc
Q 008516          220 ---VRRKDEDIDQYGRRIYDHVFGYNIEVASSN----------EETWKN-RNRPKPIYSADV--MPENLTEQNGNVAKNC  283 (563)
Q Consensus       220 ---~~~~~~~~~~~a~~~f~~~F~~~I~~ll~~----------~~~W~~-~~~P~pl~~~~~--~~~~~~~~~~~~~~~~  283 (563)
                         .+.++++|++||+.+|+++|+++|+|||.+          ++||++ ||+|+||.|+..  +|..+....++|.+..
T Consensus       648 ~~~~p~~~~~cv~~a~~~f~~~F~~~I~qLl~~fP~d~~~~~G~~fWs~~kr~P~pl~Fd~~~~~h~~Fi~aaanL~A~~  727 (1008)
T TIGR01408       648 SKEKPRNFSQCVEWARLKFEKYFNNKALQLLHCFPLDIRTSTGSPFWSSPKRPPSPLKFDLNEPLHLSFIQAAAKLYATV  727 (1008)
T ss_pred             hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCccccCCCCCCCceeeCCCCHHHHHHHHHHHHHHHHH
Confidence               245899999999999999999999999987          899995 999999999943  4445555555554331


Q ss_pred             ---cc---cchhhhHHh---hcCC-----CCCCCcccccc------chHHHHHHHHHHHHhhh--------hccCCcccC
Q 008516          284 ---VV---DTSSVSAMA---SLGL-----KNPQDTWTLLE------SSRIFLEALKLFFAKRE--------KEIGNLSFD  335 (563)
Q Consensus       284 ---~~---~~~~~~~~~---~~~~-----~~~~~~~s~~e------~~~~f~~~~~~l~~~~~--------~~~~~l~Fd  335 (563)
                         ..   +.......+   ...+     +..+++|+.+.      +...+.+++.++..+..        ..+.|++||
T Consensus       728 ygi~~~~~~~~~~~~~~~~~~~~vp~f~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~p~~Fe  807 (1008)
T TIGR01408       728 YGIPFAEEDLSADALLNILSEVKIPEFKPRSNKKIQTDETARKPDTAPEDDRNAIFQLEKAILSNEATKSDFRMAPLSFE  807 (1008)
T ss_pred             hCCCCccccchHHHHHHHHhcCCCCCCCCCcCceeecChhhhcccccccchHHHHHHHHHHhhccccccCCCCCCceeec
Confidence               11   110011111   1111     12234454211      11123344554443321        237899999


Q ss_pred             CCcHh--HHHHHHHHHHHHHHHcCCCCCCHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHhcC--ccccceeeeccc
Q 008516          336 KDDQL--AVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKD--TDKYRMTYCLEH  411 (563)
Q Consensus       336 KDDd~--h~dFV~AasNLRA~~f~I~~~s~~~~K~iAGnIIPAIATTnAiVAGl~vlE~~K~l~~~--~~~~r~~f~~~~  411 (563)
                      ||||+  |||||+|||||||+||+||++|||++|+||||||||||||||+||||+|+|+||+++|+  .+.|||+|+|++
T Consensus       808 KDDd~n~HidFI~AasNLRA~nY~I~~~d~~~~K~iAG~IIPAiATTTA~vaGLv~lEl~Kv~~~~~~i~~~kn~f~nla  887 (1008)
T TIGR01408       808 KDDDHNGHIDFITAASNLRAKNYSIEPADRFKTKFIAGKIIPAIATSTATVSGLVCLELIKVTDGGYKFEVYKNCFLNLA  887 (1008)
T ss_pred             cCCCcchHHHHHHHHHhhHHHhcCCCcccHHHHHHHhccccchhhhHHHHHHHHHHHHHHHHHhccccHHHHhHHHHhhc
Confidence            99998  99999999999999999999999999999999999999999999999999999999986  489999999998


Q ss_pred             ccccccccccCCCCCCCCcccCCCc-cEEEEEcC-CCCCHHHHHHHHHHHhcCCCcCeEEecCeEEEeeCCCchHHHHHH
Q 008516          412 ITKKMLLMPVEPYEPNKSCYVCSET-PLSLEINT-SRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVAN  489 (563)
Q Consensus       412 ~~~~~~~~p~~~~~pn~~C~vC~~~-~~~l~i~~-~~~TL~~li~~~lk~~~~l~~~~i~~g~~~LY~~~~~~~~~~~~~  489 (563)
                      .+.   +...+|.+|.+.|+....| ++|-++.. .++||++|+++ ++++||+++.||++|+++||+.++.       .
T Consensus       888 lp~---~~~seP~~~~~~~~~~~~~~t~WDr~~i~~~~Tl~~~i~~-~~~~~~~~v~~is~g~~~lY~~~~~-------~  956 (1008)
T TIGR01408       888 IPL---FVFTEPTEVRKTKIRNGISFTIWDRWTLHGDFTLLEFINA-VKEKYGLEPTMVSQGVKLLYVPVMP-------G  956 (1008)
T ss_pred             ccc---ccccCCCCCCceeecCceeccceEEEEecCCCcHHHHHHH-HHHHhCCeeEEEEcCceEEEeccch-------h
Confidence            443   3334455555666554455 56544432 48999999999 6889999999999999999999863       2


Q ss_pred             hhhhhhcchhhhcCcccCCCc--------ceeeccCC---CccceeeEE
Q 008516          490 YAANLEKVKIQASSVTLCSSP--------PDFCCSCN---DADVLLFCF  527 (563)
Q Consensus       490 ~~~nl~k~L~el~~gv~~g~~--------~~~~~~~~---~~d~~~~~~  527 (563)
                      .+++|+|+|+||..-+....+        ++++|+.+   |+|+|+...
T Consensus       957 ~~erl~~~l~el~~~~~k~~~~~~~~~l~~~~~~~d~~~~dv~~P~v~~ 1005 (1008)
T TIGR01408       957 HAERLKLKMHKLVKPTTKKKLPPYRVHLTVSFACDDDGDEDVPGPPVRI 1005 (1008)
T ss_pred             hHHhcCCCHHHHHHHhccCCCCCCceEEEEEEEeecCCCCcccCCeEEE
Confidence            468899999999754544433        46666653   466887764

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.8e-100  Score=823.64  Aligned_cols=510  Identities=30%  Similarity=0.453  Sum_probs=402.6

Q ss_pred             CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCC-----eEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHH
Q 008516            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQ-----DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVL   76 (563)
Q Consensus         2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg-----~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~   76 (563)
                      ||...|+||.++++++||||+||||++||++++|+|     +|+++|||.||.||||||||||+.||||+||++|+++++
T Consensus       420 fG~~fqeKL~~~~~FlVGaGAIGCE~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNLnRQFLFR~~dVgk~KSe~AA~A~~  499 (1013)
T KOG2012|consen  420 FGAKFQEKLADQKVFLVGAGAIGCELLKNFALMGVGCGNSGKITVTDMDHIEKSNLNRQFLFRPWDVGKPKSEVAAAAAR  499 (1013)
T ss_pred             hchHHHHHHhhCcEEEEccchhhHHHHHhhhheeeccCCCCceEEeccchhhhccccceeeccccccCchHHHHHHHHHH
Confidence            678899999999999999999999999999999994     799999999999999999999999999999999999999


Q ss_pred             hhCCCceEEEeccCC---CCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCCCcc
Q 008516           77 KFRPQMSITAHHANV---KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTEC  153 (563)
Q Consensus        77 ~~np~v~I~~~~~~i---~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~C  153 (563)
                      .+||+++|+++..++   +|..|+++||.+.|+|.+|+||++||+|+++.|+.+.+|++++||.|++|+++|++|+.|+.
T Consensus       500 ~mNp~l~I~a~~~rvgpeTE~If~D~Ff~~ld~VanALDNVdAR~YvD~RCv~~~kPLLESGTlGTKGntQVvvPhlTEs  579 (1013)
T KOG2012|consen  500 GMNPDLNIIALQNRVGPETEHIFNDEFFENLDGVANALDNVDARRYVDRRCVYYRKPLLESGTLGTKGNTQVVVPHLTES  579 (1013)
T ss_pred             hcCCCceeeehhhccCcccccccchhHHhhhHHHHHhhcchhhhhhhhhhhhhhccchhhccCcCCccceeEEecccccc
Confidence            999999999999998   77899999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCCCCceeeccCCCCchhHHHHHHHHHHHHHhCCCCcccc--cc-cC--------Ccccc---chhhhhhhh
Q 008516          154 YECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQEND--LN-VR--------SSDAS---SSAHAEDVF  219 (563)
Q Consensus       154 y~C~~~~~~~~~p~cti~~~p~~~~hci~~a~~~lf~~lf~~~~~~~~--~~-~~--------~~~~~---~~~~~~~~~  219 (563)
                      |..+.+|+++++|+||++|+|+.++|||+|||+ .|+.+|.+..+..+  +. +.        ..+..   .++.+.+.+
T Consensus       580 Y~SS~DPPEksiP~CTlknFPn~IeHTiqWAR~-eFEg~F~~~~e~vN~yls~p~f~e~sl~~~~~~~~~~~l~~v~~~l  658 (1013)
T KOG2012|consen  580 YGSSRDPPEKSIPVCTLKSFPNAIEHTIQWARD-EFEGLFKQSAENVNKYLSDPVFYETSLKLIGEPQSLETLERVVDCL  658 (1013)
T ss_pred             ccccCCCcccCCceeeeccCchHHHHHHHHHHH-HHHHHhhCCHHHHHHHhcCchHHHHHHhhccCcchhHHHHHHHHHh
Confidence            999999999999999999999999999999999 89999987655321  11 10        00011   122222333


Q ss_pred             --hcCCchhHHHHHHHHhhhhhhccHHHHhcC----------CcccCC-CCCCCccccCCCCCc--chhhhcccccccc-
Q 008516          220 --VRRKDEDIDQYGRRIYDHVFGYNIEVASSN----------EETWKN-RNRPKPIYSADVMPE--NLTEQNGNVAKNC-  283 (563)
Q Consensus       220 --~~~~~~~~~~~a~~~f~~~F~~~I~~ll~~----------~~~W~~-~~~P~pl~~~~~~~~--~~~~~~~~~~~~~-  283 (563)
                        .+.++++|++||+..|+++|+++|+|||..          .+||++ ||+|.||+||...+.  .+....+++++.. 
T Consensus       659 ~~rp~~~~dCv~warl~f~~~f~~~ikqLl~~FP~d~~t~~G~pFWs~pKr~P~pl~Fd~n~~~hl~fv~Aaa~l~a~~~  738 (1013)
T KOG2012|consen  659 SERPQNWQDCVEWARLHFEKYFHNRIKQLLHNFPPDAKTSDGAPFWSGPKRCPRPLEFDVNDPLHLNFVQAAANLRAEVY  738 (1013)
T ss_pred             hcCCccHHHHHHHHHHHHHHHhhHHHHHhhcCCCcccccCCCCcCCCCCCCCCCceeecCCCchhHHHHHHHHHHHHHhc
Confidence              346799999999999999999999999975          799985 889999999954443  3444444443211 


Q ss_pred             --cccchhhhHH---hhcCC---CCCCC--c-----------cccccchHHHHHHHHHHHHhhh----hccCCcccCCCc
Q 008516          284 --VVDTSSVSAM---ASLGL---KNPQD--T-----------WTLLESSRIFLEALKLFFAKRE----KEIGNLSFDKDD  338 (563)
Q Consensus       284 --~~~~~~~~~~---~~~~~---~~~~~--~-----------~s~~e~~~~f~~~~~~l~~~~~----~~~~~l~FdKDD  338 (563)
                        +...+.....   .....   .+.+.  +           -++.+..  -++.++..+.+..    ..+.|+.|||||
T Consensus       739 gi~~~~d~~~~~~~~~~v~~p~f~P~~~~~i~~~~~~~~~~~~s~d~~~--~i~~l~~~l~~~~~~~~~~~~p~~FEKDD  816 (1013)
T KOG2012|consen  739 GIPGSQDREALAELLERVIVPEFEPKQKVKIVVEEAELAASSASVDDSA--AIDQLNKALPSPSVLPSFKMKPLDFEKDD  816 (1013)
T ss_pred             CCCcccCHHHhhhhHhhcCCCccccccCCeecccccccccccccCCchH--HHHHHhhcccccccCCCCceeeeeecccc
Confidence              0000000000   00000   00000  0           0111111  1222222222211    247899999999


Q ss_pred             Hh--HHHHHHHHHHHHHHHcCCCCCCHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHhcC--ccccceeeecccccc
Q 008516          339 QL--AVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKD--TDKYRMTYCLEHITK  414 (563)
Q Consensus       339 d~--h~dFV~AasNLRA~~f~I~~~s~~~~K~iAGnIIPAIATTnAiVAGl~vlE~~K~l~~~--~~~~r~~f~~~~~~~  414 (563)
                      |.  |||||+|||||||.||+||++||+++|+|||+||||||||||+|+||+|+|+||++.|+  .+.|||+|+|++.+.
T Consensus       817 DsN~H~dfi~aasnlRA~nY~I~~adr~k~K~IaGkIIPAIATtTa~v~Glv~LElyKv~~G~~~~e~~Kn~flnLAlp~  896 (1013)
T KOG2012|consen  817 DSNFHMDFITAASNLRAQNYSIPPADRLKTKRIAGKIIPAIATTTAAVSGLVCLELYKVVDGKRPVEAYKNTFLNLALPF  896 (1013)
T ss_pred             ccccchHHHHHHhhhhhhccCCCccchhhhheeeeeEEEEEeehhHHHHHHHHhhhhhhccCCCchHHhhhhhhcccccc
Confidence            97  99999999999999999999999999999999999999999999999999999999995  489999999999544


Q ss_pred             cccccccCCCCCCCCcccCC-CccEEEEEcC-CCCCHHHHHHHHHHHhcCCCcCeEEecCeEEEeeCCCchHHHHHHhhh
Q 008516          415 KMLLMPVEPYEPNKSCYVCS-ETPLSLEINT-SRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAA  492 (563)
Q Consensus       415 ~~~~~p~~~~~pn~~C~vC~-~~~~~l~i~~-~~~TL~~li~~~lk~~~~l~~~~i~~g~~~LY~~~~~~~~~~~~~~~~  492 (563)
                      ..+.   +|.++.+.-+.-. .|++|.+... .++||++|+++ +++++|+++.||+.|+++||..+++       ...+
T Consensus       897 f~~~---ep~~~pk~~~~~~~~~tlWdR~~v~g~~tL~~~L~~-~~~~~gl~i~mls~G~~lly~~~~~-------k~~e  965 (1013)
T KOG2012|consen  897 FSFA---EPLAAPKVQYHNDLSWTLWDRWEVKGEPTLREFLDH-LEEQHGLEITMLSQGVSLLYASFMP-------KHAE  965 (1013)
T ss_pred             eeec---ccCCCcceeeecccceeeeEEEEecCCCCHHHHHHH-HhhhcCceEEEEeccceeehhhhhh-------HHHH
Confidence            3333   3333223333333 6788766653 47999999999 6889999999999999999999876       4688


Q ss_pred             hhhcchhhhcCcccC---C-----CcceeeccC---CCccceee
Q 008516          493 NLEKVKIQASSVTLC---S-----SPPDFCCSC---NDADVLLF  525 (563)
Q Consensus       493 nl~k~L~el~~gv~~---g-----~~~~~~~~~---~~~d~~~~  525 (563)
                      +|+++..||+..+..   .     -+|+++|+.   +|.++|+.
T Consensus       966 rl~~~v~elv~~~~k~~~~~~~~~lvle~~~~d~~~eDve~P~v 1009 (1013)
T KOG2012|consen  966 RLPLRVTELVRDVTKKKLPPHVRHLVLEVACEDDDDEDVEVPPV 1009 (1013)
T ss_pred             hcCCcHHHHHHHHhcccCCCcceEEEEEEecCCCCCCcCCCCce
Confidence            999999999652222   1     235777777   77777764

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=100.00  E-value=1.3e-95  Score=776.54  Aligned_cols=401  Identities=34%  Similarity=0.552  Sum_probs=347.4

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCC-----CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516           14 KVLMVGAGGIGCELLKTLALSGF-----QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        14 ~VlvvGaGgiG~ellknLal~Gv-----g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      ||+||||||+|||++|+|+++||     |+|+|+|+|+||.|||||||||+++|||++||++|+++++++||+++|+++.
T Consensus         1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~   80 (435)
T cd01490           1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ   80 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence            69999999999999999999999     9999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCC---CcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCCCccccccCCCCCCCC
Q 008516           89 ANVKD---PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTY  165 (563)
Q Consensus        89 ~~i~~---~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~Cy~C~~~~~~~~~  165 (563)
                      .++.+   ..++.+||+++|+|++|+||.++|.++|++|+.+++|+|++|+.|+.|++++++|+.|+||+|..+|+++++
T Consensus        81 ~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~gt~G~~G~v~v~iP~~te~y~~~~~p~~~~~  160 (435)
T cd01490          81 NRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVYYRKPLLESGTLGTKGNTQVVIPHLTESYSSSRDPPEKSI  160 (435)
T ss_pred             cccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEecccceeEEEEEeCCCCCCccCCCCCCCCCC
Confidence            98853   356789999999999999999999999999999999999999999999999999999999999998889999


Q ss_pred             CceeeccCCCCchhHHHHHHHHHHHHHhCCCCcccccccCCccccchhhhhhhhhcCCchhHHHHHHHHhhhhhhccHHH
Q 008516          166 PVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQYGRRIYDHVFGYNIEV  245 (563)
Q Consensus       166 p~cti~~~p~~~~hci~~a~~~lf~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~F~~~I~~  245 (563)
                      |+||++++|+.++|||+||++ +|+.+|++..+.               .+.+.    +++|++||+.+|+++|+++|++
T Consensus       161 P~Ctl~~~P~~~eHcI~wA~~-~F~~lF~~~~~~---------------~~~~~----~~~c~~~a~~~f~~~F~~~I~~  220 (435)
T cd01490         161 PLCTLKNFPNAIEHTIQWARD-EFEGLFKQPPEN---------------VNQYL----FEDCVRWARLLFEKYFNNNIKQ  220 (435)
T ss_pred             CCccccCCCCCchHHHHHHHH-HHHHHhccchHH---------------HHHhh----HHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999 899999864321               11111    6899999999999999999999


Q ss_pred             HhcC----------CcccCC-CCCCCccccCCCCCcchhhhcccccccccccchhhhHHhhcCCCCCCCccccccchHHH
Q 008516          246 ASSN----------EETWKN-RNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIF  314 (563)
Q Consensus       246 ll~~----------~~~W~~-~~~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~f  314 (563)
                      ||++          ++||++ ||+|+|++|+...+.+                                        ..|
T Consensus       221 ll~~~p~d~~~~~g~~fw~~~kr~P~p~~fd~~~~~h----------------------------------------~~f  260 (435)
T cd01490         221 LLHNFPPDAVTSDGAPFWSGPKRCPTPLEFDVNNPLH----------------------------------------LDF  260 (435)
T ss_pred             HHHhCccccccccccccccCCCCCCCCCCCCCCCHHH----------------------------------------HHH
Confidence            9986          899985 8899999988432211                                        234


Q ss_pred             HHHHHHHHHhhhhccCCcccCCCcHh--HHHHHHHHHHHHHHHcCCCCCCHHHHHhhhcccccchhhHHHHHHHHHHHHH
Q 008516          315 LEALKLFFAKREKEIGNLSFDKDDQL--AVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEA  392 (563)
Q Consensus       315 ~~~~~~l~~~~~~~~~~l~FdKDDd~--h~dFV~AasNLRA~~f~I~~~s~~~~K~iAGnIIPAIATTnAiVAGl~vlE~  392 (563)
                      +.+...+..+.-   +-..||||||+  |||||+|||||||+||+|++.|++++|+|||||||||||||||||||+++|+
T Consensus       261 v~~~a~l~a~~~---~~~~FeKDdd~n~h~~fi~a~snlRa~~y~I~~~~~~~~k~iag~IIPAiaTT~aivagl~~~e~  337 (435)
T cd01490         261 VLAAANLYAEVY---GIPGFEKDDDTNFHMDFITAASNLRARNYSIPPADRHKTKRIAGKIIPAIATTTAAVTGLVCLEL  337 (435)
T ss_pred             HHHHHHHHHHhc---CCCccccCCchhHHHHHHHHhhhhHHHHcCCCccCHHHHHHHhhCCCCchhhHHHHHHHHHHHHH
Confidence            444444433221   11239999997  9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcC--ccccceeeecccccccccccccCCCCCCCCcccCCCccEE--EEEcCCCCCHHHHH-HHHHHHhcCCCcCe
Q 008516          393 IKVLLKD--TDKYRMTYCLEHITKKMLLMPVEPYEPNKSCYVCSETPLS--LEINTSRSKLRDFV-EKIVKAKLGINFPL  467 (563)
Q Consensus       393 ~K~l~~~--~~~~r~~f~~~~~~~~~~~~p~~~~~pn~~C~vC~~~~~~--l~i~~~~~TL~~li-~~~lk~~~~l~~~~  467 (563)
                      +|+++++  .+.|||+|+|++.+.  +..+.+..+|+.+|..-..|++|  ++++ .++|+++|+ ++ +++++|+++.|
T Consensus       338 ~K~~~~~~~~~~~~n~~~nla~p~--~~~~~p~~~~~~~~~~~~~~t~Wdr~~v~-~~~t~~~~~~~~-~~~~~~~~v~~  413 (435)
T cd01490         338 YKVVDGKRPLEAYKNAFLNLALPF--FAFSEPIPAPKVKYAYDEEWTIWDRFEVK-GKQTLQELLIDY-FKEKYGLEVTM  413 (435)
T ss_pred             HHHHhCCccHHHcchHhhhccCCc--cccccCCCCCccccCCCCEEeeEeEEEEc-CCCcHHHHHHHH-HHHHhCCeEEE
Confidence            9999986  588999999998443  33333344556665222346665  4444 589999999 98 69999999999


Q ss_pred             EEecCeEEEeeCCC
Q 008516          468 IMHGSNLLYEVGDD  481 (563)
Q Consensus       468 i~~g~~~LY~~~~~  481 (563)
                      |++|+++||..+++
T Consensus       414 i~~g~~~ly~~~~~  427 (435)
T cd01490         414 LSQGVSMLYSSFMP  427 (435)
T ss_pred             EEeCCeEEEeecCC
Confidence            99999999999875

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=100.00  E-value=6.1e-89  Score=701.32  Aligned_cols=311  Identities=64%  Similarity=1.056  Sum_probs=297.8

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCCC
Q 008516           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD   93 (563)
Q Consensus        14 ~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~~   93 (563)
                      ||+|||+||+|||++|||+++|||+|+|+|+|+||.|||+|||||+++|||++||++++++++++||+++|+++..++++
T Consensus         1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~   80 (312)
T cd01489           1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD   80 (312)
T ss_pred             CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCCCccccccCCCCCCCCCceeeccC
Q 008516           94 PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITST  173 (563)
Q Consensus        94 ~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~Cy~C~~~~~~~~~p~cti~~~  173 (563)
                      ..++.+|++++|+||+|+||.++|.++|++|+.+++|+|++|+.|+.|++++++|+.++||+|.++++++++|+|||+++
T Consensus        81 ~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~gt~G~~G~v~vi~p~~t~c~~c~~~~~~~~~pictI~~~  160 (312)
T cd01489          81 PDFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIESGTTGFLGQVQVIKKGKTECYECQPKETPKTFPVCTIRST  160 (312)
T ss_pred             ccchHHHHhcCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEecCcceeEEEEEcCCCCCccCCCCCCCCCcCCcceecCC
Confidence            66778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHHHHHhCCCCcccccccCCccccchhhhhhhhhcCCchhHHHHHHHHhhhhhhccHHHHhcCCccc
Q 008516          174 PSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQYGRRIYDHVFGYNIEVASSNEETW  253 (563)
Q Consensus       174 p~~~~hci~~a~~~lf~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~F~~~I~~ll~~~~~W  253 (563)
                      |+.++|||+||++ +|+                                           +|+++|+++|++|+++++||
T Consensus       161 p~~~~hci~~a~~-~f~-------------------------------------------~~~~~f~~~i~~l~~~~~~w  196 (312)
T cd01489         161 PSQPIHCIVWAKS-LFF-------------------------------------------LFNKVFKDDIERLLSMEELW  196 (312)
T ss_pred             CCCCEeehhHHHH-HHH-------------------------------------------HHHHHHHHHHHHHHhhhhhh
Confidence            9999999999998 554                                           57889999999999999999


Q ss_pred             CCCCCCCccccCCCCCcchhhhcccccccccccchhhhHHhhcCCCCCCCccccccchHHHHHHHHHHHHhhhhccCCcc
Q 008516          254 KNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIFLEALKLFFAKREKEIGNLS  333 (563)
Q Consensus       254 ~~~~~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~f~~~~~~l~~~~~~~~~~l~  333 (563)
                      +++++|.|+.|+.                                                                 ++
T Consensus       197 ~~~~~p~p~~~~~-----------------------------------------------------------------~~  211 (312)
T cd01489         197 KTRKPPVPLSWKE-----------------------------------------------------------------LT  211 (312)
T ss_pred             cCCCCCCCCCCCC-----------------------------------------------------------------cC
Confidence            9988999996541                                                                 26


Q ss_pred             cCCCcHhHHHHHHHHHHHHHHHcCCCCCCHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHhcCccccceeeeccc-c
Q 008516          334 FDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRMTYCLEH-I  412 (563)
Q Consensus       334 FdKDDd~h~dFV~AasNLRA~~f~I~~~s~~~~K~iAGnIIPAIATTnAiVAGl~vlE~~K~l~~~~~~~r~~f~~~~-~  412 (563)
                      |||||++||+||+|+|||||++|+|+..|++++|+||||||||||||||||||++++|++|++++..+.+|++|+++. +
T Consensus       212 fdkDd~~~~~~v~~~a~lRa~~f~I~~~~~~~~k~i~g~IiPaiatTnaivag~~~~e~~k~~~~~~~~~~~~~~~~~~~  291 (312)
T cd01489         212 FDKDDQDALDFVAAAANLRSHVFGIPMKSRFDIKQMAGNIIPAIATTNAIIAGLIVLEALKVLSGDKEQCRTVFLNLQPN  291 (312)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhhhHHHhhhHhhhcccC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999876 5


Q ss_pred             cccccccccCCCCCCCCcccC
Q 008516          413 TKKMLLMPVEPYEPNKSCYVC  433 (563)
Q Consensus       413 ~~~~~~~p~~~~~pn~~C~vC  433 (563)
                      .+++++.|..+.+|||+|++|
T Consensus       292 ~~~~~~~~~~~~~~n~~c~~c  312 (312)
T cd01489         292 RRKRLLVPCKLDPPNPNCYVC  312 (312)
T ss_pred             CCCcEecCCCCCCcCCCCCCC
Confidence            667899999999999999999

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.4e-70  Score=540.86  Aligned_cols=366  Identities=34%  Similarity=0.558  Sum_probs=315.8

Q ss_pred             CHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCc
Q 008516            3 SERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQM   82 (563)
Q Consensus         3 ~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v   82 (563)
                      ++|..+.+.+.+|+|+||||+|||++|||+++||+.+++||+|+|+.|||||||||+++|||++||++||+.+.+..|+.
T Consensus        31 ~~e~l~~l~~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~~  110 (422)
T KOG2015|consen   31 SEENLEFLQDCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPGC  110 (422)
T ss_pred             CHHHHHHHhhCcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHhhCCCc
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHh---cC-------CCEEEeccccceeeEEEEeCCCCc
Q 008516           83 SITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA---AD-------VPLVESGTTGFLGQVTVHVKGKTE  152 (563)
Q Consensus        83 ~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~---~~-------~pli~~gt~G~~G~v~v~~~~~t~  152 (563)
                      .|.+|..++++  ++.+|+++|++||+++|++++|++||.+..+   .+       +|+||+|+.|++|++.+++|+.|.
T Consensus       111 ~v~~h~~kIqd--~~~~FYk~F~~iicGLDsIeaRRwIN~mL~~l~~~g~~d~~~iiPlIDGGtEG~KG~arvI~Pg~Ta  188 (422)
T KOG2015|consen  111 VVVPHRQKIQD--KPISFYKRFDLIICGLDSIEARRWINGMLVRLKLEGNYDISSIIPLIDGGTEGFKGHARVIYPGITA  188 (422)
T ss_pred             EEeeeecchhc--CCHHHHhhhceEEecccchhHHHHHHHHHHHHHhccCCCccceeeeeecCcccccceeEEEecCccH
Confidence            99999999964  5789999999999999999999999998654   22       699999999999999999999999


Q ss_pred             cccccCC--CCCCCCCceeeccCCCCchhHHHHHHHHHHHHHhCCCCcccccccCCccccchhhhhhhhhcCCchhHHHH
Q 008516          153 CYECQPK--PAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQY  230 (563)
Q Consensus       153 Cy~C~~~--~~~~~~p~cti~~~p~~~~hci~~a~~~lf~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (563)
                      |++|..+  |++.+||+|||.|+|+.|+|||+|++-..|.+++.+                                   
T Consensus       189 CieCtldlyppqvs~P~CTiAntPRlpEHciEyv~liqwpe~~~~-----------------------------------  233 (422)
T KOG2015|consen  189 CIECTLDLYPPQVSYPMCTIANTPRLPEHCIEYVKLIQWPELNPF-----------------------------------  233 (422)
T ss_pred             HHHhHHhhcCcccCcccceecCCCCCchHhhhhhhhhcchhhCcc-----------------------------------
Confidence            9999954  677889999999999999999999986433322110                                   


Q ss_pred             HHHHhhhhhhccHHHHhcCCcccCCCCCCCccccCCCCCcchhhhcccccccccccchhhhHHhhcCCCCCCCccccccc
Q 008516          231 GRRIYDHVFGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLES  310 (563)
Q Consensus       231 a~~~f~~~F~~~I~~ll~~~~~W~~~~~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~  310 (563)
                                                                                                      
T Consensus       234 --------------------------------------------------------------------------------  233 (422)
T KOG2015|consen  234 --------------------------------------------------------------------------------  233 (422)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hHHHHHHHHHHHHhhhhccCCcccCCCcHhHHHHHHHHHHHHHHHcCCCCCCHHHHHhhhcccccchhhHHHHHHHHHHH
Q 008516          311 SRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVI  390 (563)
Q Consensus       311 ~~~f~~~~~~l~~~~~~~~~~l~FdKDDd~h~dFV~AasNLRA~~f~I~~~s~~~~K~iAGnIIPAIATTnAiVAGl~vl  390 (563)
                                          ...+|.||+.||+||.--+|.||..|+|+..+++.+.++..+||||+|||||+||+.++.
T Consensus       234 --------------------g~~~~gdd~~hI~wi~er~~eRA~ef~I~gv~~~lvtGvvK~IIPaVasTNA~IAA~Ca~  293 (422)
T KOG2015|consen  234 --------------------GVPLDGDDPEHIEWIVERSNERANEFNITGVTRRLVTGVVKRIIPAVASTNAVIAAVCAT  293 (422)
T ss_pred             --------------------CCCCCCCCHHHHHHHHHHHHHHhhhcccccchHHhhhhhHHhhcchhhhhhHHHHHHHHH
Confidence                                014899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCccccceeeecccccccccccccCCCCCCCCcccCCCccEEEEEcCCCCCHHHHHHHHHHHhcCCCcCeEEe
Q 008516          391 EAIKVLLKDTDKYRMTYCLEHITKKMLLMPVEPYEPNKSCYVCSETPLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMH  470 (563)
Q Consensus       391 E~~K~l~~~~~~~r~~f~~~~~~~~~~~~p~~~~~pn~~C~vC~~~~~~l~i~~~~~TL~~li~~~lk~~~~l~~~~i~~  470 (563)
                      |++|++..... +-+.|++..- -...+...-..+..++|.+|+.....+.+.+ ..||++++++ +.+.|+|..|.++.
T Consensus       294 ea~Kl~t~~~~-~~~Nym~~n~-~eG~ytytf~~er~~nC~vCS~~~~~~~isp-t~tl~~vl~~-ls~~~~lk~p~~tt  369 (422)
T KOG2015|consen  294 EALKLLTATDD-PLDNYMNYNA-EEGIYTYTFLLERDKNCPVCSNLVQNYDISP-TVTLEDVLNH-LSKSFQLKSPALTT  369 (422)
T ss_pred             HHHHHHHhcch-hhhhheeeec-ccceeEEEeeeccCCCCccccCCCcccccCC-cccHHHHHHH-hhhhhccCCchhhh
Confidence            99999986532 2233443331 1123333334466799999998777777774 8999999999 67899999999865


Q ss_pred             c-CeEEEeeCCCchHHHHHHhhhhhhcchhhhcCcccCCCcceeecc
Q 008516          471 G-SNLLYEVGDDLDEVEVANYAANLEKVKIQASSVTLCSSPPDFCCS  516 (563)
Q Consensus       471 g-~~~LY~~~~~~~~~~~~~~~~nl~k~L~el~~gv~~g~~~~~~~~  516 (563)
                      - .+.||.++.+   ..++++++||.++|.||    .+|..+.+++-
T Consensus       370 ~~~~~ly~~~~~---~~e~~t~~nl~~~l~~l----~dg~~l~vtd~  409 (422)
T KOG2015|consen  370 AAGRTLYLSSVP---SIEEATRKNLSQSLKEL----SDGQELVVTDK  409 (422)
T ss_pred             hhcceEeecCCc---HHHHHhhhhhhhhHHHh----cCCceEEEecc
Confidence            3 4789998876   55568999999999998    47777766653

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=100.00  E-value=2.8e-69  Score=536.43  Aligned_cols=233  Identities=50%  Similarity=0.828  Sum_probs=223.0

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCCC
Q 008516           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD   93 (563)
Q Consensus        14 ~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~~   93 (563)
                      ||+|||+||+|||++|+|+++|||+|+|+|+|+|+.|||||||||+++|||++||++++++++++||+++|+++..++.+
T Consensus         1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~   80 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP   80 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCCh
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999854


Q ss_pred             -CcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCCCccccccCCCCCCCCCceeecc
Q 008516           94 -PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITS  172 (563)
Q Consensus        94 -~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~Cy~C~~~~~~~~~p~cti~~  172 (563)
                       ..++.+|++++|+|++|+||.++|+++|++|+..++|+|++|+.|+.|++++++|+.++||+|..+++++++|+||+++
T Consensus        81 ~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g~~G~~G~v~vi~p~~t~c~~C~~~~~~~~~p~Cti~~  160 (234)
T cd01484          81 EQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLIESGTEGFKGNAQVILPGMTECIECTLYPPQKNFPMCTIAS  160 (234)
T ss_pred             hhhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcccCCceEEEEEcCCCCCCcccCCCCCCCCCCccccCC
Confidence             3467889999999999999999999999999999999999999999999999999999999999988889999999999


Q ss_pred             CCCCchhHHHHHHHHHHHHHhCCCCcccccccCCccccchhhhhhhhhcCCchhHHHHHHHHhhhhhhccHHHHhcCCcc
Q 008516          173 TPSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQYGRRIYDHVFGYNIEVASSNEET  252 (563)
Q Consensus       173 ~p~~~~hci~~a~~~lf~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~F~~~I~~ll~~~~~  252 (563)
                      +|+.|+|||+||+++ |                                                               
T Consensus       161 ~P~~~~hci~~a~~~-~---------------------------------------------------------------  176 (234)
T cd01484         161 MPRLPEHCIEWARML-Q---------------------------------------------------------------  176 (234)
T ss_pred             CCCCchHHHHHHHHH-H---------------------------------------------------------------
Confidence            999999999999983 1                                                               


Q ss_pred             cCCCCCCCccccCCCCCcchhhhcccccccccccchhhhHHhhcCCCCCCCccccccchHHHHHHHHHHHHhhhhccCCc
Q 008516          253 WKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIFLEALKLFFAKREKEIGNL  332 (563)
Q Consensus       253 W~~~~~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~f~~~~~~l~~~~~~~~~~l  332 (563)
                                                                                                      
T Consensus       177 --------------------------------------------------------------------------------  176 (234)
T cd01484         177 --------------------------------------------------------------------------------  176 (234)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCcHhHHHHHHHHHHHHHHHcCCCCCCHHHHHhhhcccccchhhHHHHHHHHHHHHHH
Q 008516          333 SFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAI  393 (563)
Q Consensus       333 ~FdKDDd~h~dFV~AasNLRA~~f~I~~~s~~~~K~iAGnIIPAIATTnAiVAGl~vlE~~  393 (563)
                       |  ||+.||+||+++||+||++|+|++.|++++|+||||||||||||||||||++++|++
T Consensus       177 -~--d~~~~~~~i~~~a~~ra~~~~i~~~~~~~~~~i~~~iipai~tTnaiia~~~~~e~~  234 (234)
T cd01484         177 -W--DDPEHIQFIFQASNERASQYNIRGVTYFLTKGVAGRIIPAVATTNAVVAGVCALEVF  234 (234)
T ss_pred             -h--CCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhcCeecchhhHHHHHHHHHHHhhC
Confidence             1  667799999999999999999999999999999999999999999999999999984

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=100.00  E-value=2e-68  Score=543.87  Aligned_cols=281  Identities=41%  Similarity=0.685  Sum_probs=247.2

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCCC
Q 008516           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD   93 (563)
Q Consensus        14 ~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~~   93 (563)
                      ||+|||+||+|||++|+|+++|||+|+|+|+|+|+.|||||||||+.+|||++||++|+++++++||+++|+++..++.+
T Consensus         1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~   80 (291)
T cd01488           1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD   80 (291)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999864


Q ss_pred             CcchHhhcccccEEEEccCCHHHHHHHHHHHHhc--------CCCEEEeccccceeeEEEEeCCCCccccccCC--CCCC
Q 008516           94 PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA--------DVPLVESGTTGFLGQVTVHVKGKTECYECQPK--PAPK  163 (563)
Q Consensus        94 ~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~--------~~pli~~gt~G~~G~v~v~~~~~t~Cy~C~~~--~~~~  163 (563)
                        ++.+|+++||+||+|+||.++|+++|+.|...        ++|+|++|+.|+.|++++++|+.|+||+|..+  |+++
T Consensus        81 --~~~~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G~~G~v~vi~P~~t~C~~C~~d~~p~~~  158 (291)
T cd01488          81 --KDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTEGFKGHARVILPGITACIECSLDLFPPQV  158 (291)
T ss_pred             --hhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhccccccccCccEEEEEEcccEEEEEEEcCCCCCccccCCCCCCCCC
Confidence              46799999999999999999999999998664        49999999999999999999999999999876  6678


Q ss_pred             CCCceeeccCCCCchhHHHHHHHHHHHHHhCCCCcccccccCCccccchhhhhhhhhcCCchhHHHHHHHHhhhhhhccH
Q 008516          164 TYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQYGRRIYDHVFGYNI  243 (563)
Q Consensus       164 ~~p~cti~~~p~~~~hci~~a~~~lf~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~F~~~I  243 (563)
                      ++|+|||+++|+.++|||+||+.++|+                                                     
T Consensus       159 ~~p~Cti~~~P~~~~hci~~a~~~~~~-----------------------------------------------------  185 (291)
T cd01488         159 TFPLCTIANTPRLPEHCIEYASLIQWP-----------------------------------------------------  185 (291)
T ss_pred             CCCcccccCCCCCcchheeeeeeeecc-----------------------------------------------------
Confidence            999999999999999999999984222                                                     


Q ss_pred             HHHhcCCcccCCCCCCCccccCCCCCcchhhhcccccccccccchhhhHHhhcCCCCCCCccccccchHHHHHHHHHHHH
Q 008516          244 EVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIFLEALKLFFA  323 (563)
Q Consensus       244 ~~ll~~~~~W~~~~~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~f~~~~~~l~~  323 (563)
                                 ..+ |                                                                
T Consensus       186 -----------~~~-~----------------------------------------------------------------  189 (291)
T cd01488         186 -----------KEF-P----------------------------------------------------------------  189 (291)
T ss_pred             -----------ccc-C----------------------------------------------------------------
Confidence                       100 0                                                                


Q ss_pred             hhhhccCCcccCCCcHhHHHHHHHHHHHHHHHcCCCCCCHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHhcCcccc
Q 008516          324 KREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKY  403 (563)
Q Consensus       324 ~~~~~~~~l~FdKDDd~h~dFV~AasNLRA~~f~I~~~s~~~~K~iAGnIIPAIATTnAiVAGl~vlE~~K~l~~~~~~~  403 (563)
                             ...||+||++||+||+..|+.||.+|||+..+++.+++|+||||||||||||||||+++.|++|++++.....
T Consensus       190 -------~~~~~~d~~~~~~~i~~~a~~ra~~f~i~~~~~~~~~~v~~~iiPai~stnaiia~~~~~~~~k~~~~~~~~~  262 (291)
T cd01488         190 -------FVPLDGDDPEHIEWLYQKALERAAQFNISGVTYSLTQGVVKRIIPAVASTNAIIAAACCLEALKIATDCYENL  262 (291)
T ss_pred             -------CCcCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHhhhHheeeCccCchHHHHHHHHHHHHHHHHhccccCC
Confidence                   0159999999999999999999999999999999999999999999999999999999999999999865433


Q ss_pred             ceeeecccccccccccccCCCCCCCCcccCC
Q 008516          404 RMTYCLEHITKKMLLMPVEPYEPNKSCYVCS  434 (563)
Q Consensus       404 r~~f~~~~~~~~~~~~p~~~~~pn~~C~vC~  434 (563)
                      .| |+...... ....-.-..+++|.|.+|+
T Consensus       263 ~n-~~~~~g~~-g~~~~~~~~~~~~~c~~c~  291 (291)
T cd01488         263 NN-YLMYNGVD-GCYTYTFEHERKEDCPVCS  291 (291)
T ss_pred             Cc-eEEEecCC-ceEEEEEEEeeCCCCCCCC
Confidence            22 33222111 2333334457799999996

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK08223 hypothetical protein; Validated

Probab=100.00  E-value=7.4e-36  Score=303.02  Aligned_cols=156  Identities=27%  Similarity=0.419  Sum_probs=148.4

Q ss_pred             CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (563)
Q Consensus         2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~   81 (563)
                      +++++|++|++++|+||||||+||+++++|+++|||+|+|+|.|+||.||||||++|+.+|||++|+++++++++++||.
T Consensus        17 iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~   96 (287)
T PRK08223         17 ITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPE   96 (287)
T ss_pred             cCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeccCCCCCcchHhhcccccEEEEccCCH--HHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCCCccccccCC
Q 008516           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNL--DARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPK  159 (563)
Q Consensus        82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~--~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~Cy~C~~~  159 (563)
                      ++|+++...+++++ ..++++++|+||+|+||+  ++|.++|+.|+.+++|+|.+++.|+.|++.++.|+ ++||+|..+
T Consensus        97 v~V~~~~~~l~~~n-~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g~~gqv~v~~p~-~p~~~~~f~  174 (287)
T PRK08223         97 LEIRAFPEGIGKEN-ADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLGMGTALLVFDPG-GMSFDDYFD  174 (287)
T ss_pred             CEEEEEecccCccC-HHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccCCeEEEEEEcCC-CCchhhhcC
Confidence            99999999997654 468899999999999986  89999999999999999999999999999999885 899999854

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=100.00  E-value=6.9e-36  Score=292.08  Aligned_cols=170  Identities=30%  Similarity=0.521  Sum_probs=158.0

Q ss_pred             CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (563)
Q Consensus         2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~   81 (563)
                      ++++.|++|++++|+|+|+||+|++++++|+++|+++|+++|.|.|+.+||+|||||+++|+|++||++++++++++||+
T Consensus        11 ~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~   90 (202)
T TIGR02356        11 IGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSD   90 (202)
T ss_pred             cCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCC-CCccccccCCC
Q 008516           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKG-KTECYECQPKP  160 (563)
Q Consensus        82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~-~t~Cy~C~~~~  160 (563)
                      ++++++...+++.. ..++++++|+||+|+||.++|.++|++|+++++|+|.+++.|+.|++.++.|+ .++||+|..+.
T Consensus        91 v~i~~~~~~i~~~~-~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~~~g~~G~~~~~~p~~~~~c~~c~~~~  169 (202)
T TIGR02356        91 IQVTALKERVTAEN-LELLINNVDLVLDCTDNFATRYLINDACVALGTPLISAAVVGFGGQLMVFDPGGEGPCLRCLFPD  169 (202)
T ss_pred             CEEEEehhcCCHHH-HHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCeEEEEEEeCCCCCCChhhcCCC
Confidence            99999998886532 35688999999999999999999999999999999999999999999999988 79999999876


Q ss_pred             CCCCCCceeecc
Q 008516          161 APKTYPVCTITS  172 (563)
Q Consensus       161 ~~~~~p~cti~~  172 (563)
                      .+...|.|+...
T Consensus       170 ~~~~~~~~~~~~  181 (202)
T TIGR02356       170 IADTGPSCATAG  181 (202)
T ss_pred             CcccCCCCccCC
Confidence            555667786554

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=100.00  E-value=8.4e-36  Score=303.96  Aligned_cols=178  Identities=20%  Similarity=0.456  Sum_probs=163.9

Q ss_pred             CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (563)
Q Consensus         2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~   81 (563)
                      +++++|+||++++|+|+|+||+|+|++|||+++|||+|+|+|.|.|+.+||+|||+|+++|||++||++++++++++||.
T Consensus         9 ~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~   88 (286)
T cd01491           9 LGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPY   88 (286)
T ss_pred             cCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCCCccccccCCCC
Q 008516           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPA  161 (563)
Q Consensus        82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~Cy~C~~~~~  161 (563)
                      ++|+++...+     +.+++++||+||++.|+.++|.++|++|+++++|+|.+++.|+.|++++.++....|+++ +.++
T Consensus        89 V~V~~~~~~~-----~~~~l~~fdvVV~~~~~~~~~~~in~~c~~~~ipfI~a~~~G~~G~vf~dfg~~f~~~d~-~ge~  162 (286)
T cd01491          89 VPVTVSTGPL-----TTDELLKFQVVVLTDASLEDQLKINEFCHSPGIKFISADTRGLFGSIFCDFGDEFTVYDP-NGEE  162 (286)
T ss_pred             CEEEEEeccC-----CHHHHhcCCEEEEecCCHHHHHHHHHHHHHcCCEEEEEeccccEEEEEecCCCeEEEeCC-CCCc
Confidence            9999998764     457899999999999999999999999999999999999999999999987755555542 2467


Q ss_pred             CCCCCceeeccCCCCchhHHHHHH
Q 008516          162 PKTYPVCTITSTPSKFVHCIVWAK  185 (563)
Q Consensus       162 ~~~~p~cti~~~p~~~~hci~~a~  185 (563)
                      |+++++|+|.+.+...+||+.-.+
T Consensus       163 p~~~~i~~I~~~~~g~V~~~~~~~  186 (286)
T cd01491         163 PKSGMISSISKDNPGVVTCLDETR  186 (286)
T ss_pred             CCccceeeeecCCceEEEEECCcc
Confidence            899999999999999999975443

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=100.00  E-value=1.2e-34  Score=288.56  Aligned_cols=159  Identities=35%  Similarity=0.594  Sum_probs=150.3

Q ss_pred             CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (563)
Q Consensus         2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~   81 (563)
                      ++++.|++|++++|+|+|+||+||+++++|+++|||+|+|+|.|.|+.+||+|||||+++|+|++||++++++++++||+
T Consensus        11 ~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~   90 (228)
T cd00757          11 IGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPD   90 (228)
T ss_pred             cCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCCCccccccCCCC
Q 008516           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPA  161 (563)
Q Consensus        82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~Cy~C~~~~~  161 (563)
                      ++|+.+...++.. ...++++++|+||+|+||.++|.++++.|+++++|+|++|+.|+.|++.++.|+.++||.|.....
T Consensus        91 ~~i~~~~~~i~~~-~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g~~g~~g~v~~~~p~~~~c~~c~~~~~  169 (228)
T cd00757          91 VEIEAYNERLDAE-NAEELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVSGAVLGFEGQVTVFIPGEGPCYRCLFPEP  169 (228)
T ss_pred             CEEEEecceeCHH-HHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEEEEECCCCCCCccccCCCC
Confidence            9999999888543 235788999999999999999999999999999999999999999999999999999999986543

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=100.00  E-value=6.9e-35  Score=292.99  Aligned_cols=160  Identities=34%  Similarity=0.590  Sum_probs=149.8

Q ss_pred             CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (563)
Q Consensus         2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~   81 (563)
                      +++++|++|++++|+|+|+||+||+++++|+++|||+|+|+|.|+|+.|||+||+||+++|||++|+++++++++++||+
T Consensus        22 ~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~  101 (245)
T PRK05690         22 FDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPH  101 (245)
T ss_pred             cCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCC-CccccccCCC
Q 008516           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGK-TECYECQPKP  160 (563)
Q Consensus        82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~-t~Cy~C~~~~  160 (563)
                      ++|+++...+++.. ..++++++|+||+|+||.++|.++|++|+++++|+|.+++.|+.|++.++.|+. ++||+|....
T Consensus       102 v~i~~~~~~i~~~~-~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G~v~~~~~~~~~~c~~c~~~~  180 (245)
T PRK05690        102 IAIETINARLDDDE-LAALIAGHDLVLDCTDNVATRNQLNRACFAAKKPLVSGAAIRMEGQVTVFTYQDDEPCYRCLSRL  180 (245)
T ss_pred             CEEEEEeccCCHHH-HHHHHhcCCEEEecCCCHHHHHHHHHHHHHhCCEEEEeeeccCCceEEEEecCCCCceeeeccCC
Confidence            99999998886532 357899999999999999999999999999999999999999999999998765 8999998654


Q ss_pred             CC
Q 008516          161 AP  162 (563)
Q Consensus       161 ~~  162 (563)
                      .+
T Consensus       181 ~~  182 (245)
T PRK05690        181 FG  182 (245)
T ss_pred             CC
Confidence            33

>PRK07411 hypothetical protein; Validated

Probab=100.00  E-value=1.2e-34  Score=309.46  Aligned_cols=170  Identities=29%  Similarity=0.465  Sum_probs=156.7

Q ss_pred             CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (563)
Q Consensus         2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~   81 (563)
                      +++++|++|++++|+||||||+||+++++|+++|||+|+|+|.|+|+.|||+|||||+.+|||++||++++++++++||.
T Consensus        28 ~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~  107 (390)
T PRK07411         28 VGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPY  107 (390)
T ss_pred             cCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCC
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCCCccccccCCC-
Q 008516           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKP-  160 (563)
Q Consensus        82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~Cy~C~~~~-  160 (563)
                      ++|+++..+++.. ...++++++|+||+|+||.++|.++|++|+..++|+|.+++.|+.|++.++.++.++||+|..+. 
T Consensus       108 v~v~~~~~~~~~~-~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~g~~~v~~~~~~~c~~c~~~~~  186 (390)
T PRK07411        108 CQVDLYETRLSSE-NALDILAPYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGSIFRFEGQATVFNYEGGPNYRDLYPEP  186 (390)
T ss_pred             CeEEEEecccCHH-hHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEccCEEEEEEECCCCCCChHHhcCCC
Confidence            9999999988754 34678999999999999999999999999999999999999999999999887889999999652 


Q ss_pred             -CCCCCCceeecc
Q 008516          161 -APKTYPVCTITS  172 (563)
Q Consensus       161 -~~~~~p~cti~~  172 (563)
                       ++...|.|....
T Consensus       187 ~~~~~~~~c~~~g  199 (390)
T PRK07411        187 PPPGMVPSCAEGG  199 (390)
T ss_pred             CCcccCCCCccCC
Confidence             334567777543

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=100.00  E-value=3.3e-34  Score=302.57  Aligned_cols=191  Identities=29%  Similarity=0.432  Sum_probs=165.3

Q ss_pred             CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (563)
Q Consensus         2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~   81 (563)
                      +++++|++|++++|+|+|+||+||+++++|+++|||+|+|+|.|+|+.|||+|||||+++|+|++||++++++++++||.
T Consensus        18 ~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~   97 (355)
T PRK05597         18 IGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPD   97 (355)
T ss_pred             cCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCC
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCCCccccccCCC-
Q 008516           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKP-  160 (563)
Q Consensus        82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~Cy~C~~~~-  160 (563)
                      ++|+++...++.. ...++++++|+||+|+||.++|..+|+.|+++++|+|.+++.|+.|++.++.|+.++||+|..+. 
T Consensus        98 v~v~~~~~~i~~~-~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~~~g~~g~v~~~~~~~~~~~~~~~~~~  176 (355)
T PRK05597         98 VKVTVSVRRLTWS-NALDELRDADVILDGSDNFDTRHLASWAAARLGIPHVWASILGFDAQLSVFHAGHGPIYEDLFPTP  176 (355)
T ss_pred             cEEEEEEeecCHH-HHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCeEEEEEEcCCCCCCHHHhCCCC
Confidence            9999999888643 23578999999999999999999999999999999999999999999999988899999998643 


Q ss_pred             -CCCCCCceeeccCCCC--chhHHHHHHHHHHHHHhC
Q 008516          161 -APKTYPVCTITSTPSK--FVHCIVWAKDLLFAKLFG  194 (563)
Q Consensus       161 -~~~~~p~cti~~~p~~--~~hci~~a~~~lf~~lf~  194 (563)
                       ++...|.|+.......  ......-|.+ ..+.+.|
T Consensus       177 ~~~~~~~~c~~~gv~g~~~~~~g~~~a~e-~ik~l~g  212 (355)
T PRK05597        177 PPPGSVPSCSQAGVLGPVVGVVGSAMAME-ALKLITG  212 (355)
T ss_pred             CCccCCCCccccCcchhHHHHHHHHHHHH-HHHHHhC
Confidence             3346778875544321  1222223445 4555555

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=100.00  E-value=7.1e-34  Score=284.65  Aligned_cols=157  Identities=34%  Similarity=0.647  Sum_probs=146.6

Q ss_pred             CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (563)
Q Consensus         2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~   81 (563)
                      +++++|++|++++|+|+|+||+|++++++|+++|||+|+|+|.|.|+.|||+||+||.++|||++||++++++++++||+
T Consensus        14 ~g~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~   93 (240)
T TIGR02355        14 FDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPH   93 (240)
T ss_pred             CCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCC
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEe-CCCCccccccCC
Q 008516           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHV-KGKTECYECQPK  159 (563)
Q Consensus        82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~-~~~t~Cy~C~~~  159 (563)
                      ++|+++...+++. ...++++++|+||+|+||.++|.++|++|+++++|+|.+++.|+.|++.++. +..++||+|...
T Consensus        94 v~i~~~~~~i~~~-~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G~v~~~~~~~~~~c~~C~~~  171 (240)
T TIGR02355        94 IAINPINAKLDDA-ELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGAAIRMEGQVSVFTYQDGEPCYRCLSR  171 (240)
T ss_pred             cEEEEEeccCCHH-HHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccEeEEEEEecCCCCCccccccc
Confidence            9999999888653 2457899999999999999999999999999999999999999999998765 556899999854

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK08328 hypothetical protein; Provisional

Probab=100.00  E-value=5.6e-34  Score=284.09  Aligned_cols=158  Identities=31%  Similarity=0.434  Sum_probs=149.6

Q ss_pred             CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCc-hHHHHHHHHHHhhCC
Q 008516            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQ-SKAKVARDAVLKFRP   80 (563)
Q Consensus         2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk-~Ka~va~~~l~~~np   80 (563)
                      +++++|++|++++|+|+|+||+||+++++|+++|||+|+|+|.|.|+.|||+||++|+++|+|+ +|+++++++++++||
T Consensus        17 ~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np   96 (231)
T PRK08328         17 FGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNS   96 (231)
T ss_pred             cCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCC
Confidence            6789999999999999999999999999999999999999999999999999999999999999 699999999999999


Q ss_pred             CceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCCCccccccCCC
Q 008516           81 QMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKP  160 (563)
Q Consensus        81 ~v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~Cy~C~~~~  160 (563)
                      +++|+++...+++.. ..++++++|+||+|+||.++|..++++|+++++|+|.+++.|+.|++.++.|+.++||+|..+.
T Consensus        97 ~v~v~~~~~~~~~~~-~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~~~g~~G~v~~~~p~~~~c~~~~~~~  175 (231)
T PRK08328         97 DIKIETFVGRLSEEN-IDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLVHGAVEGTYGQVTTIVPGKTKRLREIFPK  175 (231)
T ss_pred             CCEEEEEeccCCHHH-HHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeeccCEEEEEEECCCCCCCHHHhCCC
Confidence            999999998886543 3568999999999999999999999999999999999999999999999999999999998654

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=100.00  E-value=2.1e-33  Score=300.28  Aligned_cols=169  Identities=33%  Similarity=0.525  Sum_probs=154.3

Q ss_pred             CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (563)
Q Consensus         2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~   81 (563)
                      +++++|++|++++|+|||+||+||+++++|+++|||+|+|+|.|+|+.|||+|||||+.+|||++||++++++++++||+
T Consensus        32 ~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~  111 (392)
T PRK07878         32 VGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPL  111 (392)
T ss_pred             cCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCC
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeC----CCCcccccc
Q 008516           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVK----GKTECYECQ  157 (563)
Q Consensus        82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~----~~t~Cy~C~  157 (563)
                      ++|+++..+++.. ...++++++|+||+|+||.++|.++|++|+.+++|+|.+++.|+.|++.++.+    +.++||+|.
T Consensus       112 v~i~~~~~~i~~~-~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~G~v~~~~~~~~~~~~~c~~c~  190 (392)
T PRK07878        112 VNVRLHEFRLDPS-NAVELFSQYDLILDGTDNFATRYLVNDAAVLAGKPYVWGSIYRFEGQASVFWEDAPDGLGLNYRDL  190 (392)
T ss_pred             cEEEEEeccCChh-HHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEEEEEecCCCCCCCCeeeee
Confidence            9999999888654 34678999999999999999999999999999999999999999999998864    378999998


Q ss_pred             CCCC--CCCCCceeec
Q 008516          158 PKPA--PKTYPVCTIT  171 (563)
Q Consensus       158 ~~~~--~~~~p~cti~  171 (563)
                      .+..  +...|.|.-.
T Consensus       191 ~~~~~~~~~~~~~~~~  206 (392)
T PRK07878        191 YPEPPPPGMVPSCAEG  206 (392)
T ss_pred             cCCCCCccCCCCCccC
Confidence            6533  3445677543

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=100.00  E-value=5.7e-33  Score=270.38  Aligned_cols=144  Identities=26%  Similarity=0.491  Sum_probs=137.6

Q ss_pred             CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (563)
Q Consensus         2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~   81 (563)
                      +++++|++|++++|+|+|+||+|||++|+|+++|||+|+++|.|.|+.+||+|||||+.+|+|++||++++++++++||+
T Consensus        11 ~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~   90 (197)
T cd01492          11 WGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPR   90 (197)
T ss_pred             hCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEe
Q 008516           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHV  147 (563)
Q Consensus        82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~  147 (563)
                      ++|+++...+++  ...++++++|+||++.|+.++|.++|+.|+++++|+|.+++.|+.|++++.+
T Consensus        91 v~i~~~~~~~~~--~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~~d~  154 (197)
T cd01492          91 VKVSVDTDDISE--KPEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYATGVHGLFGFVFADL  154 (197)
T ss_pred             CEEEEEecCccc--cHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecCCEEEEEEec
Confidence            999999988863  3578999999999999999999999999999999999999999999998653

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=100.00  E-value=1.2e-32  Score=288.67  Aligned_cols=158  Identities=28%  Similarity=0.458  Sum_probs=149.1

Q ss_pred             CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCC--chHHHHHHHHHHhhC
Q 008516            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVG--QSKAKVARDAVLKFR   79 (563)
Q Consensus         2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diG--k~Ka~va~~~l~~~n   79 (563)
                      +++++|++|++++|+|||+||+|++++++|+++|||+|+|+|.|.||.|||+||+||+++|+|  ++||++++++++++|
T Consensus        14 ~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~in   93 (338)
T PRK12475         14 IGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKIN   93 (338)
T ss_pred             cCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHC
Confidence            589999999999999999999999999999999999999999999999999999999999985  899999999999999


Q ss_pred             CCceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCCCccccccCC
Q 008516           80 PQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPK  159 (563)
Q Consensus        80 p~v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~Cy~C~~~  159 (563)
                      |+++|+++..+++.. ...++++++|+||+|+||.++|..+|++|+++++|+|.+++.|+.|++.++.|+.++||+|..+
T Consensus        94 p~v~i~~~~~~~~~~-~~~~~~~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~~~g~~G~~~~~~P~~tpC~~Cl~~  172 (338)
T PRK12475         94 SEVEIVPVVTDVTVE-ELEELVKEVDLIIDATDNFDTRLLINDLSQKYNIPWIYGGCVGSYGVTYTIIPGKTPCLRCLME  172 (338)
T ss_pred             CCcEEEEEeccCCHH-HHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccEEEEEEECCCCCCCHHHhcC
Confidence            999999998887643 2356789999999999999999999999999999999999999999999999999999999964


Q ss_pred             C
Q 008516          160 P  160 (563)
Q Consensus       160 ~  160 (563)
                      .
T Consensus       173 ~  173 (338)
T PRK12475        173 H  173 (338)
T ss_pred             C
Confidence            3

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=100.00  E-value=1.8e-32  Score=267.11  Aligned_cols=146  Identities=23%  Similarity=0.489  Sum_probs=137.6

Q ss_pred             CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCC--CCCCchHHHHHHHHHHhhC
Q 008516            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQ--SHVGQSKAKVARDAVLKFR   79 (563)
Q Consensus         2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~--~diGk~Ka~va~~~l~~~n   79 (563)
                      +++++|++|++++|+|+|+||+|||++|||+++|||+|+++|.|.|+.+||+|||||++  +|+|++||++++++++++|
T Consensus         9 ~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lN   88 (198)
T cd01485           9 WGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELN   88 (198)
T ss_pred             cCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHC
Confidence            68999999999999999999999999999999999999999999999999999999998  8999999999999999999


Q ss_pred             CCceEEEeccCCCC-CcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEe
Q 008516           80 PQMSITAHHANVKD-PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHV  147 (563)
Q Consensus        80 p~v~I~~~~~~i~~-~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~  147 (563)
                      |+++|+++...+.+ .....++++++|+||+|.|+.++|.++|++|+++++|+|.+++.|+.|++++..
T Consensus        89 p~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~~~~  157 (198)
T cd01485          89 PNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHHIPFISCATYGLIGYAFFDF  157 (198)
T ss_pred             CCCEEEEEecccccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEEEEch
Confidence            99999999887742 234578999999999999999999999999999999999999999999998653

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=100.00  E-value=1.6e-32  Score=290.70  Aligned_cols=169  Identities=30%  Similarity=0.504  Sum_probs=153.8

Q ss_pred             CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (563)
Q Consensus         2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~   81 (563)
                      +++++|++|++++|+|+|+||+|++++++|+++|+|+|+|+|.|.|+.|||+||+||+++|||++||++++++++++||+
T Consensus        31 ~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~  110 (370)
T PRK05600         31 FGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPD  110 (370)
T ss_pred             hCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCC---CCccccccC
Q 008516           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKG---KTECYECQP  158 (563)
Q Consensus        82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~---~t~Cy~C~~  158 (563)
                      ++|+++...+++.. ..++++++|+||+|+||.++|.++|+.|+.+++|+|.+++.|+.|++.++.++   .++||+|..
T Consensus       111 v~i~~~~~~i~~~~-~~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~~~g~~G~v~v~~~~~~~~~~~~~~l~  189 (370)
T PRK05600        111 IRVNALRERLTAEN-AVELLNGVDLVLDGSDSFATKFLVADAAEITGTPLVWGTVLRFHGELAVFNSGPDHRGVGLRDLF  189 (370)
T ss_pred             CeeEEeeeecCHHH-HHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCEEEEEEEecCCCCCCCCcHhhC
Confidence            99999999886443 45789999999999999999999999999999999999999999999998765   378999996


Q ss_pred             CCC--CCCCCceeec
Q 008516          159 KPA--PKTYPVCTIT  171 (563)
Q Consensus       159 ~~~--~~~~p~cti~  171 (563)
                      +..  ....|.|...
T Consensus       190 ~~~~~~~~~~~c~~~  204 (370)
T PRK05600        190 PEQPSGDSIPDCATA  204 (370)
T ss_pred             CCCCccccCCCCccC
Confidence            532  2345667433

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=100.00  E-value=2.4e-32  Score=286.37  Aligned_cols=160  Identities=26%  Similarity=0.435  Sum_probs=149.7

Q ss_pred             CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCC--chHHHHHHHHHHhhC
Q 008516            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVG--QSKAKVARDAVLKFR   79 (563)
Q Consensus         2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diG--k~Ka~va~~~l~~~n   79 (563)
                      +++++|++|++++|+||||||+||+++++|+++|||+|+|+|.|.|+.|||+||+||+++|+|  ++|+++++++++++|
T Consensus        14 ~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~in   93 (339)
T PRK07688         14 IGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEIN   93 (339)
T ss_pred             cCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHC
Confidence            689999999999999999999999999999999999999999999999999999999999995  599999999999999


Q ss_pred             CCceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCCCccccccCC
Q 008516           80 PQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPK  159 (563)
Q Consensus        80 p~v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~Cy~C~~~  159 (563)
                      |.++|+++..++++.. ..++++++|+||+|+||.++|.++|+.|+++++|+|.+++.|+.|++.++.|+.++||+|...
T Consensus        94 p~v~v~~~~~~~~~~~-~~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~~~g~~G~~~~~~p~~~pC~~Cl~~  172 (339)
T PRK07688         94 SDVRVEAIVQDVTAEE-LEELVTGVDLIIDATDNFETRFIVNDAAQKYGIPWIYGACVGSYGLSYTIIPGKTPCLRCLLQ  172 (339)
T ss_pred             CCcEEEEEeccCCHHH-HHHHHcCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeeeeeeeEEEEECCCCCCCeEeecC
Confidence            9999999998886543 356789999999999999999999999999999999999999999999999999999999865


Q ss_pred             CCC
Q 008516          160 PAP  162 (563)
Q Consensus       160 ~~~  162 (563)
                      ..+
T Consensus       173 ~~~  175 (339)
T PRK07688        173 SIP  175 (339)
T ss_pred             CCC
Confidence            433

>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]

Probab=99.98  E-value=1.1e-31  Score=271.34  Aligned_cols=160  Identities=41%  Similarity=0.709  Sum_probs=151.6

Q ss_pred             CHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCc
Q 008516            3 SERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQM   82 (563)
Q Consensus         3 ~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v   82 (563)
                      +.++|++|+++||+|+|+||+||+++++|+++|+|+++|+|.|+|+.|||+||++|+..|+|++|++++++.++++||.+
T Consensus        21 ~~~~q~~l~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~v~~snL~rq~~~~~~dig~~Ka~~a~~~l~~ln~~v  100 (254)
T COG0476          21 GGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFLFTEADVGKPKAEVAAKALRKLNPLV  100 (254)
T ss_pred             CHHHHHHHhhCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCcccccccCceeeecccccCCcHHHHHHHHHHHhCCCC
Confidence            45669999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCC-CCccccccCCCC
Q 008516           83 SITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKG-KTECYECQPKPA  161 (563)
Q Consensus        83 ~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~-~t~Cy~C~~~~~  161 (563)
                      +++++...++.... .++++++|+|++++||.++|..+|+.|+..++|++++++.|+.|++.++.|+ .++||+|..+..
T Consensus       101 ~v~~~~~~l~~~~~-~~~~~~~d~v~d~~dn~~~r~~iN~~~~~~~~pli~~~~~~~~g~~~~~~~~~~~~c~~~~~~~~  179 (254)
T COG0476         101 EVVAYLERLDEENA-EELIAQFDVVLDCTDNFETRYLINDACVKLGIPLVHGGAIGFEGQVTVIIPGDKTPCYRCLFPEK  179 (254)
T ss_pred             eEEEeecccChhhH-HHHhccCCEEEECCCCHHHHHHHHHHHHHhCCCeEeeeeccceEEEEEEecCCCCCcccccCCCC
Confidence            99999999876655 7899999999999999999999999999999999999999999999999999 599999997654


Q ss_pred             CC
Q 008516          162 PK  163 (563)
Q Consensus       162 ~~  163 (563)
                      +.
T Consensus       180 ~~  181 (254)
T COG0476         180 PP  181 (254)
T ss_pred             CC
Confidence            43

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=99.97  E-value=4.4e-31  Score=289.60  Aligned_cols=191  Identities=27%  Similarity=0.391  Sum_probs=161.2

Q ss_pred             CCCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCC---CchHHHHHHHHHHh
Q 008516            1 MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHV---GQSKAKVARDAVLK   77 (563)
Q Consensus         1 ~~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~di---Gk~Ka~va~~~l~~   77 (563)
                      ++|+-+.++|+++||+||||||+||+++++|+++|||+|++||.|+|+.|||+||+||+.+|+   |++||++|++++++
T Consensus       327 llP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~  406 (664)
T TIGR01381       327 LHPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKR  406 (664)
T ss_pred             cCChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHH
Confidence            478888999999999999999999999999999999999999999999999999999999999   99999999999999


Q ss_pred             hCCCceEEEeccCC-------CCC---------cchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEecccccee
Q 008516           78 FRPQMSITAHHANV-------KDP---------KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLG  141 (563)
Q Consensus        78 ~np~v~I~~~~~~i-------~~~---------~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G  141 (563)
                      +||+++|+++..++       ++.         ..-.++++++|+|++|+||.++|..++.+|..+++|+|+++ .|+.|
T Consensus       407 InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~esR~L~n~~c~~~~kplI~aA-lGfdg  485 (664)
T TIGR01381       407 IFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSREARWLPTVLCSRHKKIAISAA-LGFDS  485 (664)
T ss_pred             HCCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEE-eccce
Confidence            99999999998774       221         11246889999999999999999999999999999999985 89999


Q ss_pred             eEEEEeC------------------CCCccccccC---CCCCCCC----CceeeccCCCCchhHHHHHHHHHHHHHhC
Q 008516          142 QVTVHVK------------------GKTECYECQP---KPAPKTY----PVCTITSTPSKFVHCIVWAKDLLFAKLFG  194 (563)
Q Consensus       142 ~v~v~~~------------------~~t~Cy~C~~---~~~~~~~----p~cti~~~p~~~~hci~~a~~~lf~~lf~  194 (563)
                      ++.+..+                  ...+||.|..   +..+...    +.||+.. |......-..|.| ++..+..
T Consensus       486 ~lvmrhG~~~~~~~~~~~~~~~~~~~~~gCYfC~Dv~aP~~s~~~rtlDqqCtVtr-Pgv~~ias~~AvE-ll~~llq  561 (664)
T TIGR01381       486 YVVMRHGIGRSESVSDVSSSDSVPYSRLGCYFCNDVTAPGDSTTDRTLDQQCTVTR-PGTAMIASGLAVE-LLVSVLQ  561 (664)
T ss_pred             EEEEEecccccccccccccccccCCCCCCccccCCCCCCCcccccccccccceEec-chHHHHHHHHHHH-HHHHHhc
Confidence            9988622                  2588999993   2222233    6899654 5544445567788 4555544

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1

Probab=99.97  E-value=5.2e-30  Score=274.82  Aligned_cols=158  Identities=23%  Similarity=0.391  Sum_probs=146.0

Q ss_pred             CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (563)
Q Consensus         2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~   81 (563)
                      .++++|++|++++|+|||+||+|||++|||+++|||+|+|+|.|.|+.+||+|||+++.+|+|++||+++++.++++||+
T Consensus        10 wG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~L~eLNp~   89 (425)
T cd01493          10 WGEHGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQELNPD   89 (425)
T ss_pred             hHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHHHHHHHHCCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeccCCCCC-cchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCCCccccccCCC
Q 008516           82 MSITAHHANVKDP-KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKP  160 (563)
Q Consensus        82 v~I~~~~~~i~~~-~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~Cy~C~~~~  160 (563)
                      ++++.+...+.+. ..+.+||++||+||.+.++...+..++++|+..++|+|.+++.|+.|++++..+. +.+.++.+++
T Consensus        90 V~i~~~~e~~~~ll~~~~~f~~~fdiVI~t~~~~~~~~~L~~~c~~~~iPlI~~~s~G~~G~v~v~~~~-h~i~et~p~~  168 (425)
T cd01493          90 VNGSAVEESPEALLDNDPSFFSQFTVVIATNLPESTLLRLADVLWSANIPLLYVRSYGLYGYIRIQLKE-HTIVESHPDN  168 (425)
T ss_pred             CEEEEEecccchhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEecccCEEEEEEEECC-eEEEECCCCC
Confidence            9999998877432 2357899999999999999999999999999999999999999999999999984 5577776553

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=99.97  E-value=3.7e-31  Score=281.86  Aligned_cols=169  Identities=31%  Similarity=0.547  Sum_probs=153.1

Q ss_pred             CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (563)
Q Consensus         2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~   81 (563)
                      ++.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|.|.|+.|||+||+||+++|||++||++++++++++||.
T Consensus       125 ~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~  204 (376)
T PRK08762        125 VGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPD  204 (376)
T ss_pred             cCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCC
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCC----Ccccccc
Q 008516           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGK----TECYECQ  157 (563)
Q Consensus        82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~----t~Cy~C~  157 (563)
                      ++|+++...+++.. ..++++++|+||+|+||.++|.++|++|+++++|+|.+++.|+.|++.++.|+.    ++||+|.
T Consensus       205 v~v~~~~~~~~~~~-~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~~~~g~~g~v~~~~p~~~~~~~~c~~c~  283 (376)
T PRK08762        205 VQVEAVQERVTSDN-VEALLQDVDVVVDGADNFPTRYLLNDACVKLGKPLVYGAVFRFEGQVSVFDAGRQRGQAPCYRCL  283 (376)
T ss_pred             CEEEEEeccCChHH-HHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEEEEEeCCCCCCCCCCHhhc
Confidence            99999988876432 356789999999999999999999999999999999999999999999998876    8999998


Q ss_pred             CCC--CCCCCCceeec
Q 008516          158 PKP--APKTYPVCTIT  171 (563)
Q Consensus       158 ~~~--~~~~~p~cti~  171 (563)
                      ...  .+...|.|...
T Consensus       284 ~~~~~~~~~~~~~~~~  299 (376)
T PRK08762        284 FPEPPPPELAPSCAEA  299 (376)
T ss_pred             CCCCCCcccCCCCccC
Confidence            532  22334566543

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=99.97  E-value=1.2e-30  Score=260.26  Aligned_cols=178  Identities=25%  Similarity=0.352  Sum_probs=150.2

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCC-----C-----eEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGF-----Q-----DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR   79 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gv-----g-----~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~n   79 (563)
                      -+..+|+||||||+||+++++|+++|+     |     +|+|+|+|+|++|||||| +|...|||++||+++++++.+++
T Consensus         9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQ-lf~~~dVG~~Ka~v~~~ri~~~~   87 (244)
T TIGR03736         9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQ-AFYPADVGQNKAIVLVNRLNQAM   87 (244)
T ss_pred             hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcc-cCChhHCCcHHHHHHHHHHHhcc
Confidence            478999999999999999999999973     4     899999999999999999 58889999999999999999988


Q ss_pred             CCceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHh--c-CCCEEEecc--------ccc-----eeeE
Q 008516           80 PQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA--A-DVPLVESGT--------TGF-----LGQV  143 (563)
Q Consensus        80 p~v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~--~-~~pli~~gt--------~G~-----~G~v  143 (563)
                       +++|+++...+.+    .+++.++|+||+|+||.++|.++++.|.+  . ++||+++|+        .|.     +|+.
T Consensus        88 -~~~i~a~~~~~~~----~~~~~~~DiVi~avDn~~aR~~l~~~~~~~~~~~~~~ld~Gn~~~~gqv~~g~i~~~~k~~~  162 (244)
T TIGR03736        88 -GTDWTAHPERVER----SSTLHRPDIVIGCVDNRAARLAILRAFEGGYSGYAYWLDLGNRADDGQVILGQVPSRAKGEN  162 (244)
T ss_pred             -CceEEEEEeeeCc----hhhhcCCCEEEECCCCHHHHHHHHHHHHHhcccccceecccCCCCCCcEEEEecccccccCC
Confidence             8999999988864    23467899999999999999999999988  3 489999999        555     6777


Q ss_pred             EEEeCCCCccccccCCC---CCCCCCceeeccCCCC---c--hhHHHHHHHHHHHHHh
Q 008516          144 TVHVKGKTECYECQPKP---APKTYPVCTITSTPSK---F--VHCIVWAKDLLFAKLF  193 (563)
Q Consensus       144 ~v~~~~~t~Cy~C~~~~---~~~~~p~cti~~~p~~---~--~hci~~a~~~lf~~lf  193 (563)
                      ++++|+.|+||.|..++   ++.+.|+||+...-..   .  .-....|..+||+.+.
T Consensus       163 ~~~lP~vte~y~~~~d~~~~~~~~~PsCsla~al~~Q~l~iN~~~a~~~~~~L~~lf~  220 (244)
T TIGR03736       163 RLRLPHVGELFPELIDPSVDPDDDRPSCSLAEALAKQSLFINQAIAVFAMNLLWKLFR  220 (244)
T ss_pred             ceecCCchhhCcccccCccCCCCCCCCchHHHHhcCchhHHHHHHHHHHHHHHHHHHh
Confidence            88899999999998776   6679999998753221   1  1224566777777544

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=99.97  E-value=2.4e-30  Score=236.93  Aligned_cols=134  Identities=36%  Similarity=0.707  Sum_probs=123.1

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      +++||+|+|+||+|++++++|+++|+++|+|+|.|.|+.+||+||+||+.+|+|++|+++++++++++||.++++++..+
T Consensus         1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~   80 (135)
T PF00899_consen    1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK   80 (135)
T ss_dssp             HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEE
Q 008516           91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTV  145 (563)
Q Consensus        91 i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v  145 (563)
                      +++. ...++++++|+||+|+|+.++|.+++++|+.+++|+|++|+.|+.|++..
T Consensus        81 ~~~~-~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~g~~G~~~~  134 (135)
T PF00899_consen   81 IDEE-NIEELLKDYDIVIDCVDSLAARLLLNEICREYGIPFIDAGVNGFYGQVVM  134 (135)
T ss_dssp             CSHH-HHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEEEETTEEEEEE
T ss_pred             cccc-cccccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEEEE
Confidence            8543 34677899999999999999999999999999999999999999999864

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=99.97  E-value=8.6e-30  Score=258.78  Aligned_cols=177  Identities=27%  Similarity=0.394  Sum_probs=148.1

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCC--CCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSH--VGQSKAKVARDAVLKFRPQMSITAHHANV   91 (563)
Q Consensus        14 ~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~d--iGk~Ka~va~~~l~~~np~v~I~~~~~~i   91 (563)
                      ||+|+|+||+||+++++|+++|||+|+|+|.|+|+.|||+||+||+.+|  +|++||++++++++++||+++|+++...+
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I   80 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI   80 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence            6999999999999999999999999999999999999999999999999  99999999999999999999999987665


Q ss_pred             C----------------CCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCC------
Q 008516           92 K----------------DPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKG------  149 (563)
Q Consensus        92 ~----------------~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~------  149 (563)
                      .                +...-.++++++|+|++++||.++|..++.+|..+++|+|++ ..|+.|++....+.      
T Consensus        81 pmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tDn~esR~L~~~~~~~~~k~~I~a-alGfdg~lvmrhg~~~~~~~  159 (307)
T cd01486          81 PMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTDSRESRWLPTLLSAAKNKLVINA-ALGFDSYLVMRHGAGPQSQS  159 (307)
T ss_pred             cccccccccccccccccCHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCcEEEE-EeccceEEEEEeCCCccccc
Confidence            1                011135788999999999999999999999999999999985 67999998876432      


Q ss_pred             -------------CCccccccCCCCCC------C-CCceeeccCCCCchhHHHHHHHHHHHHHh
Q 008516          150 -------------KTECYECQPKPAPK------T-YPVCTITSTPSKFVHCIVWAKDLLFAKLF  193 (563)
Q Consensus       150 -------------~t~Cy~C~~~~~~~------~-~p~cti~~~p~~~~hci~~a~~~lf~~lf  193 (563)
                                   .-.||.|..--.|.      + =..||+.. |...-.+-..|.|+ +-.+.
T Consensus       160 ~~~~~~~~~~~~~~lgCYfCnDv~ap~~s~~drtlDqqctvtr-pG~a~ias~~avEl-~~s~l  221 (307)
T cd01486         160 GSGDSSSDSIPGSRLGCYFCNDVVAPGDSLKDRTLDQQCTVTR-PGLSMIASSIAVEL-LVSLL  221 (307)
T ss_pred             ccccccccccCCCCcceeeeCCEecCCCCCCCcccCcccceec-CchHHHHHHHHHHH-HHHHH
Confidence                         47899998643332      1 25799876 55555556788884 44444

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=99.97  E-value=6.3e-30  Score=254.22  Aligned_cols=139  Identities=27%  Similarity=0.396  Sum_probs=129.1

Q ss_pred             CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (563)
Q Consensus         2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~   81 (563)
                      +++++|++|++++|+|+|+||+|++++++|+++|||+|+|+|.|.|+.||||||+++..+|||++|+++++++++++||+
T Consensus         1 ~G~e~~~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~   80 (231)
T cd00755           1 YGEEGLEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPE   80 (231)
T ss_pred             CCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCC
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccce
Q 008516           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFL  140 (563)
Q Consensus        82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~  140 (563)
                      ++|+++...++.+....-+..++|+||+|.|+.+++..++++|+.+++|+|.++..|.+
T Consensus        81 ~~V~~~~~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g~g~~  139 (231)
T cd00755          81 CEVDAVEEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMGAGGK  139 (231)
T ss_pred             cEEEEeeeecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeCCcCC
Confidence            99999999887554444444679999999999999999999999999999999877654

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK14851 hypothetical protein; Provisional

Probab=99.97  E-value=7.1e-30  Score=287.43  Aligned_cols=157  Identities=27%  Similarity=0.439  Sum_probs=147.4

Q ss_pred             CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (563)
Q Consensus         2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~   81 (563)
                      ++++.|++|++++|+|||+||+||+++++|+++|||+|+|+|.|+|++||||||++|+.+|||++|+++++++++++||.
T Consensus        33 ~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~  112 (679)
T PRK14851         33 FTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPF  112 (679)
T ss_pred             cCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeccCCCCCcchHhhcccccEEEEccCC--HHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCCCccccccCC
Q 008516           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDN--LDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPK  159 (563)
Q Consensus        82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn--~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~Cy~C~~~  159 (563)
                      ++|+++...+++.+ ..+|++++|+||+|+||  .++|.++++.|+.+++|+|.+|+.|+.|++.++.|+ +.|++|..+
T Consensus       113 ~~I~~~~~~i~~~n-~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G~~g~~~~~~p~-~~~~~~~~~  190 (679)
T PRK14851        113 LEITPFPAGINADN-MDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLGYSSAMLVFTPQ-GMGFDDYFN  190 (679)
T ss_pred             CeEEEEecCCChHH-HHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeecccccceEEEEcCC-CCCHhHhcc
Confidence            99999999997543 36789999999999997  568999999999999999999999999999999886 788888765


Q ss_pred             C
Q 008516          160 P  160 (563)
Q Consensus       160 ~  160 (563)
                      -
T Consensus       191 ~  191 (679)
T PRK14851        191 I  191 (679)
T ss_pred             C
Confidence            4

>PRK14852 hypothetical protein; Provisional

Probab=99.96  E-value=1.2e-29  Score=289.52  Aligned_cols=157  Identities=24%  Similarity=0.405  Sum_probs=146.9

Q ss_pred             CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (563)
Q Consensus         2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~   81 (563)
                      ++.++|+||++++|+|||+||+|++++++|+++|||+|+|+|.|+|+.|||||||+++.+|||++|+++++++++++||.
T Consensus       322 ig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~  401 (989)
T PRK14852        322 VDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPF  401 (989)
T ss_pred             cCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCC
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeccCCCCCcchHhhcccccEEEEccCCH--HHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCCCccccccCC
Q 008516           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNL--DARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPK  159 (563)
Q Consensus        82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~--~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~Cy~C~~~  159 (563)
                      ++|+++...+++++ ..+|++++|+||+|+|+.  ++|+++++.|+++++|+|.+|+.|+.|++.++.|+. .|++|..+
T Consensus       402 v~I~~~~~~I~~en-~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G~~g~v~v~~p~~-~~~~~~f~  479 (989)
T PRK14852        402 LDIRSFPEGVAAET-IDAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLGYSCALLVFMPGG-MNFDSYFG  479 (989)
T ss_pred             CeEEEEecCCCHHH-HHHHhhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccccCeeEEEEcCCC-CCHHHhCC
Confidence            99999999986643 468999999999999984  578899999999999999999999999999998764 99999865


Q ss_pred             C
Q 008516          160 P  160 (563)
Q Consensus       160 ~  160 (563)
                      -
T Consensus       480 ~  480 (989)
T PRK14852        480 I  480 (989)
T ss_pred             C
Confidence            3

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=99.96  E-value=3.7e-29  Score=231.15  Aligned_cols=133  Identities=38%  Similarity=0.682  Sum_probs=126.6

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCCC
Q 008516           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD   93 (563)
Q Consensus        14 ~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~~   93 (563)
                      +|+|+|+||+|++++++|+++|+++|+|+|.|.|+++||+||++++.+|+|++|+++++++++++||+++++.+...+.+
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~   80 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE   80 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999988754


Q ss_pred             CcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEe
Q 008516           94 PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHV  147 (563)
Q Consensus        94 ~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~  147 (563)
                      .. ..++++++|+||+|.|+.++|.+++++|+++++|+|++|+.|+.|+++++.
T Consensus        81 ~~-~~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~~g~~g~~~~~~  133 (143)
T cd01483          81 DN-LDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGLGLGGDIQVID  133 (143)
T ss_pred             hh-HHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCCcEEEEEEEE
Confidence            43 267899999999999999999999999999999999999999999999886

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]

Probab=99.96  E-value=3e-30  Score=260.10  Aligned_cols=167  Identities=29%  Similarity=0.529  Sum_probs=153.7

Q ss_pred             CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (563)
Q Consensus         2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~   81 (563)
                      ++-.+|.+|++++||||||||+||..+..|+.+|+|+|-|||.|.||.|||.||.++.+..+|++||+.|++.++++||+
T Consensus        56 ~gV~GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvVe~sNlhRQVlh~ea~vg~~Ka~sA~~~lr~lNs~  135 (427)
T KOG2017|consen   56 FGVHGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVVELSNLHRQVLHTEARVGMHKAESAAAFLRRLNSH  135 (427)
T ss_pred             cccccccccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccceeehhhHHHHHhhhhhhhhhHHHHHHHHHHHhcCCC
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCCCccccccCCC-
Q 008516           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKP-  160 (563)
Q Consensus        82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~Cy~C~~~~-  160 (563)
                      ++|+.|...+..++ ..+.++++|+|++|+||+..|..+++.|+..++|+|.+...++.||+.+..-...+||+|..+. 
T Consensus       136 v~v~~y~~~L~~sN-a~~Ii~~YdvVlDCTDN~~TRYLisD~CVlLgkpLVSgSaLr~EGQLtvYny~~GPCYRClFP~P  214 (427)
T KOG2017|consen  136 VEVQTYNEFLSSSN-AFDIIKQYDVVLDCTDNVPTRYLISDVCVLLGKPLVSGSALRWEGQLTVYNYNNGPCYRCLFPNP  214 (427)
T ss_pred             ceeeechhhccchh-HHHHhhccceEEEcCCCccchhhhhhHHHHcCCcccccccccccceeEEeecCCCceeeecCCCC
Confidence            99999999886543 4688999999999999999999999999999999999999999999999988999999999543 


Q ss_pred             -CCCCCCcee
Q 008516          161 -APKTYPVCT  169 (563)
Q Consensus       161 -~~~~~p~ct  169 (563)
                       +|.....|.
T Consensus       215 pp~~~vt~C~  224 (427)
T KOG2017|consen  215 PPPEAVTNCA  224 (427)
T ss_pred             cChHHhcccc
Confidence             233555564

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=99.96  E-value=4.4e-29  Score=245.73  Aligned_cols=153  Identities=29%  Similarity=0.481  Sum_probs=136.0

Q ss_pred             CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (563)
Q Consensus         2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~   81 (563)
                      +++++|++|++++|+|+|+||+||+++++|+++|+++|+|+|.|.|+.+||+||+++ .+|+|++|+++++++++++||+
T Consensus        18 ~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~-~~dvG~~Ka~~a~~~l~~lnp~   96 (212)
T PRK08644         18 HTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYF-ISQIGMPKVEALKENLLEINPF   96 (212)
T ss_pred             cCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEee-hhhCCChHHHHHHHHHHHHCCC
Confidence            688999999999999999999999999999999999999999999999999999976 7899999999999999999999


Q ss_pred             ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhc-CCCEEEeccccceeeEEEEeCCC--Cccccc
Q 008516           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA-DVPLVESGTTGFLGQVTVHVKGK--TECYEC  156 (563)
Q Consensus        82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~-~~pli~~gt~G~~G~v~v~~~~~--t~Cy~C  156 (563)
                      ++|+++...+++.. ..++++++|+||+|+||.++|..+++.|+++ ++|+|.++..|..|++..+.+..  ..||.|
T Consensus        97 v~v~~~~~~i~~~~-~~~~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (212)
T PRK08644         97 VEIEAHNEKIDEDN-IEELFKDCDIVVEAFDNAETKAMLVETVLEHPGKKLVAASGMAGYGDSNSIKTRRIGKNFYIV  173 (212)
T ss_pred             CEEEEEeeecCHHH-HHHHHcCCCEEEECCCCHHHHHHHHHHHHHhCCCCEEEeehhhccCCceEEEecCCCCCeeEC
Confidence            99999998886532 3478999999999999999999999999998 99999986666667766554433  455544

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=99.95  E-value=5.2e-28  Score=281.86  Aligned_cols=149  Identities=19%  Similarity=0.473  Sum_probs=140.4

Q ss_pred             CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (563)
Q Consensus         2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~   81 (563)
                      +|.++|+||++++|+|+|+||+|+|++|||+++|||+|+|+|.|.|+.+||+||||++++|||++||++++++++++||.
T Consensus        14 ~G~eaq~kL~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea~~~~L~eLNp~   93 (1008)
T TIGR01408        14 LGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAVVKKLAELNPY   93 (1008)
T ss_pred             cCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHcCchHHHHHHHHHHHHCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcC--CCEEEeccccceeeEEEEeCCCCcccc
Q 008516           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAAD--VPLVESGTTGFLGQVTVHVKGKTECYE  155 (563)
Q Consensus        82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~--~pli~~gt~G~~G~v~v~~~~~t~Cy~  155 (563)
                      ++|+++...+     +.+++++||+||+|.++.+.+..+|++|+.++  +|+|.+++.|+.|++++.++....|.+
T Consensus        94 V~V~~~~~~l-----~~e~l~~fdvVV~t~~~~~~~~~in~~cr~~~~~I~fI~~~~~G~~G~vf~D~g~~f~~~d  164 (1008)
T TIGR01408        94 VHVSSSSVPF-----NEEFLDKFQCVVLTEMSLPLQKEINDFCHSQCPPIAFISADVRGLFGSLFCDFGDEFEVLD  164 (1008)
T ss_pred             ceEEEecccC-----CHHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCCeEEEEEeecceEEEEEecCCCceEEEe
Confidence            9999998766     35789999999999999999999999999999  899999999999999998765555544

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=99.95  E-value=1.1e-27  Score=228.82  Aligned_cols=142  Identities=26%  Similarity=0.437  Sum_probs=129.1

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCCC
Q 008516           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD   93 (563)
Q Consensus        14 ~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~~   93 (563)
                      ||+|+|+||+|++++++|+++|+++|+|+|.|.|+.+||+||++ ..+|+|++|+++++++++++||+++++++...+++
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~-~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~   79 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQY-FLSQIGEPKVEALKENLREINPFVKIEAINIKIDE   79 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccc-cHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence            69999999999999999999999999999999999999999995 56899999999999999999999999999988865


Q ss_pred             CcchHhhcccccEEEEccCCHHHHHHHHHHHHhc-CCCEEEeccccceeeEEEEeCCC--Ccccccc
Q 008516           94 PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA-DVPLVESGTTGFLGQVTVHVKGK--TECYECQ  157 (563)
Q Consensus        94 ~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~-~~pli~~gt~G~~G~v~v~~~~~--t~Cy~C~  157 (563)
                      . ...++++++|+||+|+||.++|..+++.|.+. ++|+|.++..|..|++..+.++.  .+||+|.
T Consensus        80 ~-~~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (174)
T cd01487          80 N-NLEGLFGDCDIVVEAFDNAETKAMLAESLLGNKNKPVVCASGMAGFGDSNNIKTKKISDNFYICG  145 (174)
T ss_pred             h-hHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEehhhccCCeEEEEecCCCCCeEEee
Confidence            3 24578999999999999999999888877776 99999998889999998876654  5799998

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=99.95  E-value=8.4e-28  Score=243.19  Aligned_cols=137  Identities=27%  Similarity=0.468  Sum_probs=125.8

Q ss_pred             CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (563)
Q Consensus         2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~   81 (563)
                      +++++|++|++++|+|+|+||+||+++++|+++|||+|+|+|+|.|+.||+|||+++..+|||++|++++++++.++||+
T Consensus        20 ~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~   99 (268)
T PRK15116         20 YGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPE   99 (268)
T ss_pred             hCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEecccc
Q 008516           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTG  138 (563)
Q Consensus        82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G  138 (563)
                      ++|+++...++.+.....+..++|+||+|.|+..++..++++|+.+++|+|.+|..|
T Consensus       100 ~~V~~i~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGag  156 (268)
T PRK15116        100 CRVTVVDDFITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAG  156 (268)
T ss_pred             cEEEEEecccChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCcc
Confidence            999999877764433333335799999999999999999999999999999997555

>PRK07877 hypothetical protein; Provisional

Probab=99.95  E-value=2.4e-27  Score=267.66  Aligned_cols=162  Identities=20%  Similarity=0.323  Sum_probs=143.6

Q ss_pred             CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCC-CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC
Q 008516            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP   80 (563)
Q Consensus         2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gv-g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np   80 (563)
                      +++++|++|++++|+|||+| +||.++.+|+++|| |+|+|+|.|+||.|||||| +|+..|+|++|+++++++++++||
T Consensus        97 ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq-~~~~~diG~~Kv~~a~~~l~~inp  174 (722)
T PRK07877         97 ITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRV-PAGVFDLGVNKAVVAARRIAELDP  174 (722)
T ss_pred             CCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccc-cCChhhcccHHHHHHHHHHHHHCC
Confidence            78999999999999999997 99999999999996 9999999999999999999 589999999999999999999999


Q ss_pred             CceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEE---EEeCCCCcccccc
Q 008516           81 QMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVT---VHVKGKTECYECQ  157 (563)
Q Consensus        81 ~v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~---v~~~~~t~Cy~C~  157 (563)
                      +++|+++...+++++ -.++++++|+|++|+||.++|..+|+.|+++++|+|.++..+  |++.   ..+...++||.|.
T Consensus       175 ~i~v~~~~~~i~~~n-~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~~~~--g~~~~e~~~~~p~~pc~~cl  251 (722)
T PRK07877        175 YLPVEVFTDGLTEDN-VDAFLDGLDVVVEECDSLDVKVLLREAARARRIPVLMATSDR--GLLDVERFDLEPDRPILHGL  251 (722)
T ss_pred             CCEEEEEeccCCHHH-HHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCC--CCcCcceeeeCCCCceeecc
Confidence            999999999997543 467899999999999999999999999999999999998555  7773   2234589999999


Q ss_pred             CCCCC-CCCCce
Q 008516          158 PKPAP-KTYPVC  168 (563)
Q Consensus       158 ~~~~~-~~~p~c  168 (563)
                      .+..+ ..++.+
T Consensus       252 ~~~~~~~~~~~~  263 (722)
T PRK07877        252 LGDIDAAKLAGL  263 (722)
T ss_pred             CCCCChhhhccC
Confidence            75433 334433

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=99.94  E-value=5.3e-26  Score=221.90  Aligned_cols=153  Identities=25%  Similarity=0.439  Sum_probs=127.0

Q ss_pred             CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (563)
Q Consensus         2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~   81 (563)
                      ++++.|++|++++|+|+|+||+|++++++|+++|+++++|+|.|.|+.+||+||+ |..+|+|++|++++++.++++||.
T Consensus        11 ~~~~~q~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~-~~~~~iG~~Ka~~~~~~l~~inp~   89 (200)
T TIGR02354        11 HTPKIVQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQ-YKASQVGEPKTEALKENISEINPY   89 (200)
T ss_pred             cCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEccccccccc-CChhhCCCHHHHHHHHHHHHHCCC
Confidence            5789999999999999999999999999999999999999999999999999997 567899999999999999999999


Q ss_pred             ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHH-HhcC-CCEEEeccccceeeE--EEE-e-CCCCcccc
Q 008516           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLC-LAAD-VPLVESGTTGFLGQV--TVH-V-KGKTECYE  155 (563)
Q Consensus        82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c-~~~~-~pli~~gt~G~~G~v--~v~-~-~~~t~Cy~  155 (563)
                      ++++++..++++.. ..++++++|+||+|+||.++|..+++.| ...+ .+++.+  .|..|+.  ..+ . +....||.
T Consensus        90 ~~i~~~~~~i~~~~-~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~~--~g~~g~~~~~~~~~~~~~~~~~~  166 (200)
T TIGR02354        90 TEIEAYDEKITEEN-IDKFFKDADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIAA--SGLAGYDDANSIKTRKISKHFYL  166 (200)
T ss_pred             CEEEEeeeeCCHhH-HHHHhcCCCEEEECCCCHHHHHHHHHHHHHHcCCCcEEEE--eccccCCCCceEEecccCCCEEE
Confidence            99999999886543 3567899999999999999998876555 4444 444442  3444444  223 2 23457899


Q ss_pred             ccC
Q 008516          156 CQP  158 (563)
Q Consensus       156 C~~  158 (563)
                      |..
T Consensus       167 ~~~  169 (200)
T TIGR02354       167 CGD  169 (200)
T ss_pred             cCC
Confidence            943

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=99.94  E-value=2e-26  Score=224.40  Aligned_cols=137  Identities=29%  Similarity=0.491  Sum_probs=128.9

Q ss_pred             CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (563)
Q Consensus         2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~   81 (563)
                      +++++.++|++++|+|+|+||+|+.++..|+++|+|+|+|||+|.|+.+|+|||.--...+||++|+++++++++.+||.
T Consensus        20 ~G~~~lekl~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~   99 (263)
T COG1179          20 YGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPE   99 (263)
T ss_pred             cChhHHHHHhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCC
Confidence            68999999999999999999999999999999999999999999999999999976667899999999999999999999


Q ss_pred             ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEecccc
Q 008516           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTG  138 (563)
Q Consensus        82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G  138 (563)
                      ++|.++...+++++..+-+..+||+||+|.|++.+...+-.+|+.+++|+|.+|-.|
T Consensus       100 c~V~~~~~f~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Gag  156 (263)
T COG1179         100 CEVTAINDFITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGAG  156 (263)
T ss_pred             ceEeehHhhhCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHHcCCCEEeecccc
Confidence            999999999998877666677899999999999999999999999999999997544

>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family

Probab=99.93  E-value=6.4e-26  Score=235.70  Aligned_cols=139  Identities=16%  Similarity=0.230  Sum_probs=131.7

Q ss_pred             HHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCce
Q 008516            4 ERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMS   83 (563)
Q Consensus         4 ~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~   83 (563)
                      +++|++|++++|+   +||+|+.++..|+. |||+|+|+|.|.|+.|||+  +||+++|||++|+++|++++.++||.++
T Consensus        68 ~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GVg~L~ivD~D~Ve~SNL~--~L~~~~diG~~K~~~a~~~L~~lnp~v~  141 (318)
T TIGR03603        68 EDYQKHLKKSKVL---LGKFGANIAYNLCN-NVGALFISDKTYFQETAEI--DLYSKEFILKKDIRDLTSNLDALELTKN  141 (318)
T ss_pred             HHHHHHHhhCeee---cccchHHHHHHHhC-CCCEEEEEcCCEechhhHH--HHhChhhcCcHHHHHHHHHHHHhCCCCE
Confidence            5589999999999   99999999999999 9999999999999999999  8999999999999999999999999999


Q ss_pred             EEEeccCCCCCcchHhhcccccEEEEccCCHHHHHH--HHHHHHhcCCCEEEeccccceeeEEEEeCCCCccccccC
Q 008516           84 ITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRH--VNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQP  158 (563)
Q Consensus        84 I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~--in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~Cy~C~~  158 (563)
                      |+..          .++++++|+|++|+||+..|..  +|+.|++.++|+|.++..|+.|++.++.|+.++||+|..
T Consensus       142 i~~~----------~~li~~~DlVid~tDn~~~r~L~~iN~ac~~~~~PlV~gav~g~~Gqv~~~~P~~t~C~~Cl~  208 (318)
T TIGR03603       142 VDEL----------KDLLKDYNYIIICTEHSNISLLRGLNKLSKETKKPNTIAFIDGPFVFITCTLPPETGCFECLE  208 (318)
T ss_pred             EeeH----------HHHhCCCCEEEECCCCccHhHHHHHHHHHHHHCCCEEEEEEccCEEEEEEEeCCCCCcHHHcc
Confidence            9763          3578999999999999999955  999999999999999999999999999999999999984

Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.

>PRK06153 hypothetical protein; Provisional

Probab=99.92  E-value=4.7e-25  Score=230.65  Aligned_cols=147  Identities=18%  Similarity=0.283  Sum_probs=126.1

Q ss_pred             HHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCcccc-CCCCCCCCc--hHHHHHHHHHHhhCCC
Q 008516            5 RQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQF-LFRQSHVGQ--SKAKVARDAVLKFRPQ   81 (563)
Q Consensus         5 ~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqf-Lf~~~diGk--~Ka~va~~~l~~~np~   81 (563)
                      +.|++|++++|+||||||+||.++..|+++||++|+|+|.|.|+.|||+||+ +|+.+|+|+  +|++++++++.++|| 
T Consensus       169 ~~q~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~-  247 (393)
T PRK06153        169 ALSAKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRR-  247 (393)
T ss_pred             HHHHHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCC-
Confidence            5699999999999999999999999999999999999999999999999998 678999999  999999999999998 


Q ss_pred             ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCCCccccccCCC
Q 008516           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKP  160 (563)
Q Consensus        82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~Cy~C~~~~  160 (563)
                       .|+++...+++.  +.+.+.++|+||+|+|+.++|..++++|..+++|+|++|+.     +.+.-.....|.+|+...
T Consensus       248 -~I~~~~~~I~~~--n~~~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~~-----l~~~~g~l~G~~Rvt~~~  318 (393)
T PRK06153        248 -GIVPHPEYIDED--NVDELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGMG-----LELSNGSLGGILRVTLST  318 (393)
T ss_pred             -eEEEEeecCCHH--HHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeeec-----ceecCCCcCcEEEEEEec
Confidence             567777777543  34578999999999999999999999999999999999853     111111124577776533

>PF02134 UBACT: Repeat in ubiquitin-activating (UBA) protein; InterPro: IPR000127 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]

Probab=99.91  E-value=1.1e-24  Score=175.40  Aligned_cols=67  Identities=52%  Similarity=0.681  Sum_probs=56.4

Q ss_pred             ccCCCcHhHHHHHHHHHHHHHHHcCCCCCCHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHhcC
Q 008516          333 SFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKD  399 (563)
Q Consensus       333 ~FdKDDd~h~dFV~AasNLRA~~f~I~~~s~~~~K~iAGnIIPAIATTnAiVAGl~vlE~~K~l~~~  399 (563)
                      +|||||++|++||+|+|||||++||||+.|++++++++|+||||++||||||||++++|++|+++++
T Consensus         1 ~Fd~dd~~h~~fI~a~anLrA~~f~I~~~~~~~~~~i~~~iIP~~~~t~~iva~~~~~e~~k~~~~~   67 (67)
T PF02134_consen    1 EFDKDDPLHLDFIYAAANLRAQNFGIPPLDREEIKKIAGNIIPAFAPTNAIVAGIAVNELYKLLQNC   67 (67)
T ss_dssp             ---TTSHHHHHHHHHHHHHHHHHTT---S-HHHHHHHHTTEE-B-HHHHHHHHHHHHHHHHHHHTT-
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHhcCcCCCcCCchhHHHHHHHHHHHHHHhcC
Confidence            5999999999999999999999999999999999999999999999999999999999999999863

Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme is responsible for activating ubiquitin, the first step in ubiquitinylation. The E1 enzyme hydrolyses ATP and adenylates the C-terminal glycine residue of ubiquitin, and then links this residue to the active site cysteine of E1, yielding a ubiquitin-thioester and free AMP. To be fully active, E1 must non-covalently bind to and adenylate a second ubiquitin molecule. The E1 enzyme can then transfer the thioester-linked ubiquitin molecule to a cysteine residue on the ubiquitin-conjugating enzyme, E2, in an ATP-dependent reaction. This domain is found 2 times in each member of the ubiquitin activating enzymes and is located downstream of the active site cysteine [].; GO: 0005524 ATP binding, 0008641 small protein activating enzyme activity, 0006464 protein modification process; PDB: 1Z7L_A 3CMM_A 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H ....

>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]

Probab=99.89  E-value=4.9e-23  Score=202.64  Aligned_cols=153  Identities=31%  Similarity=0.611  Sum_probs=139.9

Q ss_pred             HHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceE
Q 008516            5 RQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSI   84 (563)
Q Consensus         5 ~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I   84 (563)
                      ...+||+...|.|||.||+|+-.+..|.++|+|++.+.|.|+||..|+||-| |+++..|.+|+++|.+.+..+||++.|
T Consensus        75 ~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDYDkVElANMNRLF-f~P~QaGlsKv~AA~~TL~~iNPDV~i  153 (422)
T KOG2336|consen   75 DDYERIREFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLF-FQPDQAGLSKVDAAVQTLAEINPDVVI  153 (422)
T ss_pred             hhHHHHhhheeEEEecCchhHHHHHHHHhcCcceEEEeecchhhhhcccccc-cCcccccchHHHHHHHHHHhcCCCeEE
Confidence            4578999999999999999999999999999999999999999999999997 899999999999999999999999999


Q ss_pred             EEeccCCCC-CcchHhhc-----------ccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccc--cceeeEEEEeCCC
Q 008516           85 TAHHANVKD-PKFNVEFF-----------KQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT--GFLGQVTVHVKGK  150 (563)
Q Consensus        85 ~~~~~~i~~-~~~~~~~~-----------~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~--G~~G~v~v~~~~~  150 (563)
                      +.|.-+|+. ..|+ .|.           +..|+|+.|+||.+||..+|..|-..+.-|+++|..  ...||++.+.||.
T Consensus       154 E~hn~NITTvenFd-~F~~~is~g~~~~gkpvDLVLSCVDNfEARMavN~ACNE~~q~WmESGVSEnAVSGHIQ~i~PGe  232 (422)
T KOG2336|consen  154 EVHNYNITTVENFD-TFTDRISNGSLCPGKPVDLVLSCVDNFEARMAVNQACNELNQTWMESGVSENAVSGHIQLIVPGE  232 (422)
T ss_pred             EEeecceeeehhHH-HHHHHhhcCCCCCCCcceEEeeehhhHHHHHHHHHHHHHhhhHHHHccCccccccceeEEecCCc
Confidence            999999853 2222 222           358999999999999999999999999999999976  5779999999999


Q ss_pred             CccccccCC
Q 008516          151 TECYECQPK  159 (563)
Q Consensus       151 t~Cy~C~~~  159 (563)
                      |.|+.|.|+
T Consensus       233 tACFACaPP  241 (422)
T KOG2336|consen  233 TACFACAPP  241 (422)
T ss_pred             cceecccCc
Confidence            999999976

>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=3e-22  Score=199.73  Aligned_cols=146  Identities=21%  Similarity=0.473  Sum_probs=138.5

Q ss_pred             CHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCc
Q 008516            3 SERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQM   82 (563)
Q Consensus         3 ~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v   82 (563)
                      +-++|++|+++||||+|.+|+|.|++|||+++|||++++.|.-.|...+++-|||.+.+++|+.||++..++++.+||.|
T Consensus        22 G~~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV~~ltlLD~~~Vt~Ed~~~qFli~~~~vg~~raeas~erl~~LNPmV  101 (331)
T KOG2014|consen   22 GLEAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGVGSLTLLDDRLVTEEDVGAQFLISASSVGQTRAEASLERLQDLNPMV  101 (331)
T ss_pred             cHHHHHhhhhceEEEecCchHHHHHHHHhhhcccceeEEeeccccchhcCCceeEEchhhhchHHHHHHHHHHHhcCCce
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCC
Q 008516           83 SITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGK  150 (563)
Q Consensus        83 ~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~  150 (563)
                      +|....+++.+.  +++||.+||+||..--+.+.+..+|.+|++.+++++.++..|+.|+++..+.++
T Consensus       102 ~v~~d~edl~ek--~eeff~qFdlVV~~~~s~e~~~kvn~icrk~~i~F~a~d~~g~~Gy~F~dL~~h  167 (331)
T KOG2014|consen  102 DVSVDKEDLSEK--DEEFFTQFDLVVATDQSREEKCKVNEICRKLNIAFYAGDCFGLCGYAFADLQEH  167 (331)
T ss_pred             EEEechhhhhhc--chhhhhceeEEEEeccchhhhhhHHHHHHhcCceEEeccccceeeeeeeehhhh
Confidence            999999988653  589999999999988889999999999999999999999999999999987654

>PTZ00245 ubiquitin activating enzyme; Provisional

Probab=99.87  E-value=6.5e-22  Score=194.76  Aligned_cols=106  Identities=15%  Similarity=0.283  Sum_probs=97.8

Q ss_pred             CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (563)
Q Consensus         2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~   81 (563)
                      ++.++|+||++++|+|+|+||+|+|++|||+++|||+|+|+|.|.|+.+||+|||+++. ++|++|+++++++++++||.
T Consensus        16 wG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve~SNL~RQfl~~~-dvGk~KAeaAa~~L~eLNP~   94 (287)
T PTZ00245         16 WGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADVCTNYLMQG-EAGGTRGARALGALQRLNPH   94 (287)
T ss_pred             hCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccchhhhcccccccc-ccCCcHHHHHHHHHHHHCCC
Confidence            68899999999999999999999999999999999999999999999999999999987 68999999999999999999


Q ss_pred             ceEEEeccCCCCCcchHhhcccccEEEEccCCHH
Q 008516           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLD  115 (563)
Q Consensus        82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~  115 (563)
                      ++|+++..+++.       -.+|++||.+.-+.+
T Consensus        95 V~V~~i~~rld~-------~n~fqvvV~~~~~le  121 (287)
T PTZ00245         95 VSVYDAVTKLDG-------SSGTRVTMAAVITEE  121 (287)
T ss_pred             cEEEEcccccCC-------cCCceEEEEEcccHH
Confidence            999999887754       348899998876543

>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=7.9e-22  Score=216.64  Aligned_cols=179  Identities=20%  Similarity=0.442  Sum_probs=164.6

Q ss_pred             CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (563)
Q Consensus         2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~   81 (563)
                      +|+++.+||+.++|||.|+||+|.|+||||+++||+++||.|...+..++|+.||+++++|||+++|++..+++.++|+.
T Consensus        27 lG~eAM~~m~~S~VLisGl~GLGvEIAKNliLaGVksvTlhD~~~~~~~DLssqf~L~E~DigknRA~as~~~LaeLN~y  106 (1013)
T KOG2012|consen   27 LGHEAMRRMQGSNVLISGLQGLGVEIAKNLILAGVKSVTLHDPRPVQLSDLSSQFYLSEEDIGKNRAEASVEKLAELNNY  106 (1013)
T ss_pred             ccHHHHHHHhhCcEEEecCCcccHHHHhhHhhhccceEEeeCCCcccHHhhccceeeeHHhcCCchHHHHHHHHHHhhcc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCCCccccccCCCC
Q 008516           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPA  161 (563)
Q Consensus        82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~Cy~C~~~~~  161 (563)
                      |.|..+.+..     +.+|+++|++||-+--..+....||++|+++++.+|.+.+.|..|+++..++....|++ ..+..
T Consensus       107 V~V~v~t~~~-----~~e~L~~FqvVVlt~~~le~q~~i~~fch~~~i~fi~ad~RGLfg~lFCDFG~eF~v~D-~tGee  180 (1013)
T KOG2012|consen  107 VPVVVLTGPL-----TEEFLSDFQVVVLTDASLEEQLKINDFCHSHGIAFIAADTRGLFGQLFCDFGEEFTVLD-PTGEE  180 (1013)
T ss_pred             eeeEEecCcc-----cHHHHhCCcEEEEecCchHHHHHHHHHHHhcCeEEEEeccchhhhhhhccCCCceEEeC-CCCCc
Confidence            9999998766     47899999999998888899999999999999999999999999999999999988887 45667


Q ss_pred             CCCCCceeeccCCCCchhHHHHHHH
Q 008516          162 PKTYPVCTITSTPSKFVHCIVWAKD  186 (563)
Q Consensus       162 ~~~~p~cti~~~p~~~~hci~~a~~  186 (563)
                      |.+.-+-.|...-...+.|+.-+++
T Consensus       181 P~t~mI~~Is~d~pGvvT~ld~~rH  205 (1013)
T KOG2012|consen  181 PLTGMIASISQDNPGVVTCLDGARH  205 (1013)
T ss_pred             chhhHHhhccCCCCceEEEecCccc
Confidence            7777777777665577888877765

>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=9.7e-20  Score=182.05  Aligned_cols=136  Identities=25%  Similarity=0.379  Sum_probs=126.3

Q ss_pred             CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (563)
Q Consensus         2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~   81 (563)
                      |+|++++||+++-|+||||||+|+.++..|+++|+++|.|||.|.|..|-||||---...|||.||+.+++++++++.|.
T Consensus        64 fGee~m~kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~skiaPw  143 (430)
T KOG2018|consen   64 FGEEGMEKLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHFSKIAPW  143 (430)
T ss_pred             hhhhHHHHhcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHHHHHHHhhCcc
Confidence            78999999999999999999999999999999999999999999999999999998889999999999999999999999


Q ss_pred             ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccc
Q 008516           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT  137 (563)
Q Consensus        82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~  137 (563)
                      ++|++...-++.+.-.+-.+.+.|+|++|.||.+...-+-++|..+++++|.+.-.
T Consensus       144 ~eIdar~~l~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss~Ga  199 (430)
T KOG2018|consen  144 CEIDARNMLWTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISSTGA  199 (430)
T ss_pred             ceecHHHhhcCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEeccCc
Confidence            99999887776655445566789999999999999999999999999999987533

>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=1.9e-19  Score=187.03  Aligned_cols=157  Identities=24%  Similarity=0.386  Sum_probs=139.2

Q ss_pred             CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (563)
Q Consensus         2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~   81 (563)
                      -++++|..|..++|+++|||++|||++|||++.|+|.++++|...|+.++++.+|+...+++||+||++..+.++++||+
T Consensus        17 wge~gQ~~le~a~vCll~~~~~g~e~lKnLvl~Gigs~tvvd~~~v~~~d~g~nF~~~~~~~GksrA~a~~e~LqeLN~~   96 (523)
T KOG2016|consen   17 WGEEGQAALESASVCLLNATPLGSEALKNLVLPGIGSFTVVDGSKVEQGDLGNNFFLDAKSIGKSRAEATLEFLQELNPS   96 (523)
T ss_pred             HHHHhHhhhhhceEEEecCChhHHHHHHhhcccccccEEEEecceeeecchhhHHHHHHHhhchhHHHHHHHHHHHhChh
Confidence            36899999999999999999999999999999999999999999999999999999899999999999999999999999


Q ss_pred             ceEEEeccCCCC-CcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCCCccccccCC
Q 008516           82 MSITAHHANVKD-PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPK  159 (563)
Q Consensus        82 v~I~~~~~~i~~-~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~Cy~C~~~  159 (563)
                      |+-.......+. ...+.+||.+|++|+.+--+.+....+.+.|+.+++|++.+.+.|+.|.++..+..+ .-.+.+|+
T Consensus        97 V~~~~vee~p~~Li~~~p~ff~qFtvViatnl~E~~~~kl~~~l~~~~vpll~~rs~Gl~G~iRI~ikEH-~iieshPD  174 (523)
T KOG2016|consen   97 VSGSFVEESPDFLIDNDPSFFSQFTVVIATNLNEQTLLKLAEILREANVPLLLTRSYGLAGTIRISIKEH-TIIESHPD  174 (523)
T ss_pred             hhcCccccChhhhhhcCchhhheeeeeeccccchhhhhhhHHHHHhcCCceEEEeeecceEEEEEEeeec-cccccCCC
Confidence            987776655421 133578999999999998888888899999999999999999999999999998763 33343443

>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]

Probab=99.74  E-value=6.4e-18  Score=178.27  Aligned_cols=191  Identities=25%  Similarity=0.370  Sum_probs=151.7

Q ss_pred             CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCC---CchHHHHHHHHHHhh
Q 008516            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHV---GQSKAKVARDAVLKF   78 (563)
Q Consensus         2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~di---Gk~Ka~va~~~l~~~   78 (563)
                      +|.-..+++.+.|+|+.|||.+||.++++|...||+|||.+|..+|..||-.||.||..+|.   |++||++|+++++++
T Consensus       330 vPdLnLd~is~~KcLLLGAGTLGC~VAR~Ll~WGvRhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rLk~I  409 (669)
T KOG2337|consen  330 VPDLNLDIISQTKCLLLGAGTLGCNVARNLLGWGVRHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRLKEI  409 (669)
T ss_pred             cCccchhhhhcceeEEecCcccchHHHHHHHhhccceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHHHHh
Confidence            57778899999999999999999999999999999999999999999999999999999997   599999999999999


Q ss_pred             CCCceEEEeccCC-------CCC---------cchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceee
Q 008516           79 RPQMSITAHHANV-------KDP---------KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQ  142 (563)
Q Consensus        79 np~v~I~~~~~~i-------~~~---------~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~  142 (563)
                      +|.++-+.+.-.|       .+.         .--+.+++..|+|+-.+|+.++|..-.-+|...++-+|++. .|+..+
T Consensus       410 fP~m~atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsRESRWLPtll~a~~~KivINaA-LGFDsy  488 (669)
T KOG2337|consen  410 FPSMEATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSRESRWLPTLLAAAKNKIVINAA-LGFDSY  488 (669)
T ss_pred             CccccccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccchhhhhHHHHHhhhcceEeeee-ccccee
Confidence            9999887776555       111         01134688999999999999999999999999998888875 466655


Q ss_pred             EEEE--------------------eCCCCccccccCCCCCCC-------CCceeeccCCCCchhHHHHHHHHHHHHHhC
Q 008516          143 VTVH--------------------VKGKTECYECQPKPAPKT-------YPVCTITSTPSKFVHCIVWAKDLLFAKLFG  194 (563)
Q Consensus       143 v~v~--------------------~~~~t~Cy~C~~~~~~~~-------~p~cti~~~p~~~~hci~~a~~~lf~~lf~  194 (563)
                      +..-                    -+.+-.||.|..--+|..       =..||+.. |....-.-..|.|++-..+.+
T Consensus       489 lVMRHG~~~~~~~~d~q~s~~~~i~~~qLGCYFCnDV~AP~nSl~DRTLDQqCTVtR-PG~a~IA~alAVELlvslLQh  566 (669)
T KOG2337|consen  489 LVMRHGTGRKEASDDGQSSDLKCINGDQLGCYFCNDVVAPGNSLTDRTLDQQCTVTR-PGVANIASALAVELLVSLLQH  566 (669)
T ss_pred             EEEecCCCCcccccccccccccccCcccceeEeEcceecCCCcccccchhheeeccC-CchhHHHHHHHHHHHHHHHhC
Confidence            5433                    123567999986544321       25799875 555444567888844444443

>PF10585 UBA_e1_thiolCys: Ubiquitin-activating enzyme active site ; InterPro: IPR019572 Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=99.52  E-value=2.7e-15  Score=110.88  Aligned_cols=45  Identities=62%  Similarity=1.249  Sum_probs=39.8

Q ss_pred             CCCccccccCCCCCCCCCceeeccCCCCchhHHHHHHHHHHHHHhC
Q 008516          149 GKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFG  194 (563)
Q Consensus       149 ~~t~Cy~C~~~~~~~~~p~cti~~~p~~~~hci~~a~~~lf~~lf~  194 (563)
                      +.|+||+|.+++.++++|+|||||+|+.++|||+||++ +|+.+|+
T Consensus         1 ~~Tecy~c~~~~~~~~~P~CTir~~P~~~~HcI~wAk~-~f~~~F~   45 (45)
T PF10585_consen    1 HVTECYECSPDPPEKSYPVCTIRNFPRTPEHCIEWAKD-LFEELFG   45 (45)
T ss_dssp             TTS--TTCSGGGSSSSEEHHHHHTS-SSHHHHHHHHHH-HHHHHHT
T ss_pred             CccccccCCCCCCCCCCCcchhhcCCCCchHHHHHHHH-HHHHHhC
Confidence            47999999999999999999999999999999999997 8999996

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin-conjugating enzymes (E2) []. This domain carries the last of five conserved cysteines that is part of the active site of the enzyme, responsible for ubiquitin thiolester complex formation, the active site being represented by the sequence motif PICTLKNFP []. Not all proteins in this entry contain a functional active site.; PDB: 3CMM_A 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B 2PX9_A 1Z7L_A 3GZN_D 3DBL_F 1R4N_H ....

>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein

Probab=99.51  E-value=4.8e-14  Score=154.51  Aligned_cols=136  Identities=24%  Similarity=0.384  Sum_probs=115.1

Q ss_pred             HHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCce
Q 008516            4 ERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMS   83 (563)
Q Consensus         4 ~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~   83 (563)
                      ....++-+++||+|+|.||+|+.++.+|+.+|+++|+.+|.|.+ .||++|        ||+. ++.|++    +||+++
T Consensus       121 ~~rF~~qR~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v-~SNlnR--------IgEl-~e~A~~----~n~~v~  186 (637)
T TIGR03693       121 ALKFELSRNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAE-EHALDR--------IHEL-AEIAEE----TDDALL  186 (637)
T ss_pred             hhhhhhhhcccEEEEecCchHHHHHHHHHhcCCCcEEEEecccc-chhhhH--------HHHH-HHHHHH----hCCCCc
Confidence            44556669999999999999999999999999999999999999 999999        8876 666555    999999


Q ss_pred             EEEeccCCCCCcchHhhcccccEEEEccCC--HHHHHHHHHHHHhcC---CCEEEeccccceeeEEEEeCCCCcccccc
Q 008516           84 ITAHHANVKDPKFNVEFFKQFNVVLNGLDN--LDARRHVNRLCLAAD---VPLVESGTTGFLGQVTVHVKGKTECYECQ  157 (563)
Q Consensus        84 I~~~~~~i~~~~~~~~~~~~~dvVi~alDn--~~ar~~in~~c~~~~---~pli~~gt~G~~G~v~v~~~~~t~Cy~C~  157 (563)
                      |+.+..  +....-.+.++++|+|+...|+  ..-.+++|+.|++.+   +|++-+|..++.|-++.  |+.++|++|.
T Consensus       187 v~~i~~--~~~~dl~ev~~~~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~~G~~~liGPlft--PgkTGCWeCa  261 (637)
T TIGR03693       187 VQEIDF--AEDQHLHEAFEPADWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAICLKQVGLAGPVFQ--QHGDECFEAA  261 (637)
T ss_pred             eEeccC--CcchhHHHhhcCCcEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEEcccceeecceEC--CCCCcHHHHH
Confidence            999875  2233346778999999999995  445678999999999   56677788888887766  9999999994

Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.

>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B

Probab=99.28  E-value=2.4e-12  Score=109.12  Aligned_cols=77  Identities=27%  Similarity=0.401  Sum_probs=60.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHhcCCCcCeEEecCeEEEeeCCCchHHHHHHhhhhhhcchhhhcCcccCCCcceeeccCC
Q 008516          439 SLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVKIQASSVTLCSSPPDFCCSCN  518 (563)
Q Consensus       439 ~l~i~~~~~TL~~li~~~lk~~~~l~~~~i~~g~~~LY~~~~~~~~~~~~~~~~nl~k~L~el~~gv~~g~~~~~~~~~~  518 (563)
                      ++.+|.+++||++|++.|+|+++||..|.|+.++++||++++.       .+++|++|+|++|  |+++|++|.+.+...
T Consensus         1 tv~~d~~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~-------~~~~~l~k~L~el--gi~~gs~L~v~D~~q   71 (87)
T PF14732_consen    1 TVKVDTKKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEE-------EYDDNLPKKLSEL--GIVNGSILTVDDFDQ   71 (87)
T ss_dssp             EEEE-TTT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSS-------SSTTCTTSBGGGG--T--TT-EEEEEETTT
T ss_pred             CEEEechhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcc-------hhhhcccCChhHc--CCCCCCEEEEEEcCC
Confidence            4678899999999999999999999999999999999999862       4789999999999  999999999999988


Q ss_pred             Ccccee
Q 008516          519 DADVLL  524 (563)
Q Consensus       519 ~~d~~~  524 (563)
                      ++.+-+
T Consensus        72 ~~~~~i   77 (87)
T PF14732_consen   72 DFNLEI   77 (87)
T ss_dssp             TEEEEE
T ss_pred             CcEEEE
Confidence            765544

>PF09358 UBA_e1_C: Ubiquitin-activating enzyme e1 C-terminal domain; InterPro: IPR018965 This presumed domain found at the C terminus of Ubiquitin-activating enzyme e1 proteins is functionally uncharacterised

Probab=99.13  E-value=1.5e-11  Score=111.18  Aligned_cols=90  Identities=20%  Similarity=0.281  Sum_probs=59.6

Q ss_pred             cceeeecccccccccccccCCCCCCCCcccCCCccE--EEEEcCCCCCHHHHHHHHHHHhcCCCcCeEEecCeEEEeeCC
Q 008516          403 YRMTYCLEHITKKMLLMPVEPYEPNKSCYVCSETPL--SLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGD  480 (563)
Q Consensus       403 ~r~~f~~~~~~~~~~~~p~~~~~pn~~C~vC~~~~~--~l~i~~~~~TL~~li~~~lk~~~~l~~~~i~~g~~~LY~~~~  480 (563)
                      |||+|+|++.+...+..|.+   |....+.-..+++  +++++. ++||++|+++ ++++||+++.||++|+++||+.+ 
T Consensus         1 yrN~F~NLAlP~~~fsEP~~---~~k~k~~~~~~T~WDr~~v~~-~~Tl~~li~~-~~~~~~lev~ml~~g~~~LY~~f-   74 (125)
T PF09358_consen    1 YRNSFLNLALPFFSFSEPIP---APKTKYNDKEWTLWDRIEVNG-DMTLQELIDY-FKEKYGLEVTMLSQGVSLLYSSF-   74 (125)
T ss_dssp             --EEEEETTTTEEEEE---B-----EEEETTEEETTT-EEEEES---BHHHHHHH-HHHTTS-EEEEEEETTEEEEETT-
T ss_pred             CccEEEEcCccceeeeeccC---CCceEecCccccceeEEEEcC-CCCHHHHHHH-HHHHhCceEEEEEeCCEEEEecC-
Confidence            79999999965545555443   3333331113444  456664 7999999999 79999999999999999999988 


Q ss_pred             CchHHHHHHhhhhhhcchhhhcC
Q 008516          481 DLDEVEVANYAANLEKVKIQASS  503 (563)
Q Consensus       481 ~~~~~~~~~~~~nl~k~L~el~~  503 (563)
                      +.+     ..+++|++++++|..
T Consensus        75 ~~~-----~~~~rl~~~i~elv~   92 (125)
T PF09358_consen   75 PPP-----KHKERLKMPISELVE   92 (125)
T ss_dssp             -HH-----HHHHHTTSBHHHHHH
T ss_pred             Chh-----hhHHHhCCcHHHHHH
Confidence            322     357899999999954

; PDB: 3CMM_A.

>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades

Probab=98.36  E-value=3.8e-07  Score=76.73  Aligned_cols=69  Identities=14%  Similarity=0.147  Sum_probs=56.0

Q ss_pred             EEEcCCCCCHHHHHHHHHHHh--cCCCcCeEEecCeEEEeeCCCchHHHHHHhhhhhhcchhhhcCcccCCCcceeecc
Q 008516          440 LEINTSRSKLRDFVEKIVKAK--LGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVKIQASSVTLCSSPPDFCCS  516 (563)
Q Consensus       440 l~i~~~~~TL~~li~~~lk~~--~~l~~~~i~~g~~~LY~~~~~~~~~~~~~~~~nl~k~L~el~~gv~~g~~~~~~~~  516 (563)
                      ++++ .++||++||+. +.++  +.|..|+|+.+++.||....   ++.+++++.||.|+|.||   +.+|..+.|++.
T Consensus         1 i~v~-~~~TL~~lid~-L~~~~~~qlk~PSlt~~~k~LYm~~p---p~Lee~Tr~NL~k~l~eL---~~~g~ei~VtD~   71 (84)
T PF08825_consen    1 IEVS-PSWTLQDLIDS-LCEKPEFQLKKPSLTTANKTLYMQSP---PSLEEATRPNLSKKLKEL---LSDGEEITVTDP   71 (84)
T ss_dssp             EEES-TTSBSHHHHHH-HHHSTTT--SS-EEESSEEEEEESSS---HHHHHHTGGGGSSBTTTT---HHSSEEEEEEET
T ss_pred             CCcC-ccchHHHHHHH-HHhChhhhcCCCcccCCCceEEEeCC---HHHHHHhhhhhhhhHHHH---hcCCCEEEEECC
Confidence            3555 57999999999 5555  89999999999999998864   577889999999999999   789998888654

This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....

>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain

Probab=98.04  E-value=4.7e-06  Score=81.19  Aligned_cols=96  Identities=24%  Similarity=0.288  Sum_probs=75.0

Q ss_pred             CHHHHHHHcCCcEEEECCcHHHHH-HHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516            3 SERQLEAIKGAKVLMVGAGGIGCE-LLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (563)
Q Consensus         3 ~~~~q~kL~~~~VlvvGaGgiG~e-llknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~   81 (563)
                      +.+.++++++.+|.|+|.|+.|++ ++..|+.+|++.+.                  +                   .+ 
T Consensus        96 ~~~a~~~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~------------------~-------------------~a-  137 (193)
T TIGR03882        96 PAAALERLRQLTVTVLSFGEGGAAALAAALAAAGIRIAP------------------S-------------------EA-  137 (193)
T ss_pred             HHHHHHHHhcCcEEEEecCCCcHHHHHHHHHHcCCCccC------------------C-------------------CC-
Confidence            456799999999999999999999 99999999998654                  0                   01 


Q ss_pred             ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEE-eCCCCcccccc
Q 008516           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVH-VKGKTECYECQ  157 (563)
Q Consensus        82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~-~~~~t~Cy~C~  157 (563)
                                           ..++|+.......-...+|+..++.++|++-....|..+.+.+. .|+.|+|+.|.
T Consensus       138 ---------------------~l~vVl~~Dyl~p~L~~~n~~~l~~~~~~l~v~~~~~~~~~gp~~~p~~~~c~~c~  193 (193)
T TIGR03882       138 ---------------------DLTVVLTDDYLDPELAAINQRALAAGRPWLLVKPGGVQPWIGPLFKPGKTGCWHCL  193 (193)
T ss_pred             ---------------------CEEEEEeCCCCChHHHHHHHHHHHcCCceEEEEeCCceEEECCeecCCCCcccccC
Confidence                                 12334433222233456899999999999999999999999875 69999999995

This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.84  E-value=7.4e-05  Score=79.85  Aligned_cols=101  Identities=23%  Similarity=0.399  Sum_probs=74.9

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK   92 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~   92 (563)
                      .+|+|+|||++|+.++.+|++.|.++|++.|...                   .|+.    ++...... ++++..-++.
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~-------------------~~~~----~i~~~~~~-~v~~~~vD~~   57 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK-------------------EKCA----RIAELIGG-KVEALQVDAA   57 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH-------------------HHHH----HHHhhccc-cceeEEeccc
Confidence            5899999999999999999999999999987211                   1222    22222111 6777776665


Q ss_pred             CCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEecccc
Q 008516           93 DPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTG  138 (563)
Q Consensus        93 ~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G  138 (563)
                      +..-..+.++++|+||++..-.-.+ .+-+.|.+.++++++.....
T Consensus        58 d~~al~~li~~~d~VIn~~p~~~~~-~i~ka~i~~gv~yvDts~~~  102 (389)
T COG1748          58 DVDALVALIKDFDLVINAAPPFVDL-TILKACIKTGVDYVDTSYYE  102 (389)
T ss_pred             ChHHHHHHHhcCCEEEEeCCchhhH-HHHHHHHHhCCCEEEcccCC
Confidence            5444568899999999998865544 67788999999999987543

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=97.73  E-value=4.2e-05  Score=83.00  Aligned_cols=32  Identities=41%  Similarity=0.581  Sum_probs=30.3

Q ss_pred             cCCcccCCCcHhHHHHHHHHHHHHHHHcCCCC
Q 008516          329 IGNLSFDKDDQLAVEFVTAAANIRAASFGISL  360 (563)
Q Consensus       329 ~~~l~FdKDDd~h~dFV~AasNLRA~~f~I~~  360 (563)
                      ..|++||.+|+.|++||.++|||||.+|+|+.
T Consensus       245 P~p~~fd~~~~~h~~fv~~~a~l~a~~~~~~~  276 (435)
T cd01490         245 PTPLEFDVNNPLHLDFVLAAANLYAEVYGIPG  276 (435)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc
Confidence            56899999999999999999999999999986

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]

Probab=97.66  E-value=0.0003  Score=65.59  Aligned_cols=117  Identities=15%  Similarity=0.252  Sum_probs=92.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHH---HhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516           12 GAKVLMVGAGGIGCELLKTLA---LSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLa---l~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      ...|.++|||.+|--++-+|.   +.|..+|.++|...|+..++---  ---..+|.+|++-++ ++.+-.+.-.|++..
T Consensus        18 rGeV~l~G~GRLG~Rval~Lle~HRGGperi~v~Dgqrve~dDiihr--r~Ga~~GEyKv~Fi~-rl~~~~f~r~V~a~p   94 (217)
T COG4015          18 RGEVSLIGCGRLGVRVALDLLEVHRGGPERIYVFDGQRVEEDDIIHR--RLGAKVGEYKVDFIK-RLGRVHFGRRVEAFP   94 (217)
T ss_pred             CceEEEEeccchhHHHHHHHHHHhcCCCeEEEEecCcccCchhhHHH--HhCCCcchhHHHHHH-HhCcCCCCceeeccc
Confidence            345999999999999999997   56888999999999999998311  113579999999765 456677888999999


Q ss_pred             cCCCCCcchHhhcccccEEEEc---cCCHHHHHHHHHHHHhcCCCEEEe
Q 008516           89 ANVKDPKFNVEFFKQFNVVLNG---LDNLDARRHVNRLCLAADVPLVES  134 (563)
Q Consensus        89 ~~i~~~~~~~~~~~~~dvVi~a---lDn~~ar~~in~~c~~~~~pli~~  134 (563)
                      +++++++  ...+++ |+|+.+   -|+...-..+-+.|++.++.-|..
T Consensus        95 E~it~dN--lhll~g-DVvvi~IAGGdT~PvTaaii~ya~~rG~~TisT  140 (217)
T COG4015          95 ENITKDN--LHLLKG-DVVVICIAGGDTIPVTAAIINYAKERGIKTIST  140 (217)
T ss_pred             ccccccc--hhhhcC-CEEEEEecCCCcchhHHHHHHHHHHcCceEeec
Confidence            9997653  456666 776554   577788888889999999876654

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.62  E-value=0.00021  Score=73.86  Aligned_cols=77  Identities=21%  Similarity=0.316  Sum_probs=60.1

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      ++.++|+|+|+||.|..++..|+..|+++|+|+|.+                   ..|++.+++.+.+..+.+.+.... 
T Consensus       125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~-------------------~~ka~~la~~l~~~~~~~~~~~~~-  184 (284)
T PRK12549        125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD-------------------PARAAALADELNARFPAARATAGS-  184 (284)
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC-------------------HHHHHHHHHHHHhhCCCeEEEecc-
Confidence            566799999999999999999999999999999754                   268888888887777765543321 


Q ss_pred             CCCCCcchHhhcccccEEEEccC
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGLD  112 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~alD  112 (563)
                      ++      .+.+.++|+||+|+.
T Consensus       185 ~~------~~~~~~aDiVInaTp  201 (284)
T PRK12549        185 DL------AAALAAADGLVHATP  201 (284)
T ss_pred             ch------HhhhCCCCEEEECCc
Confidence            11      234578999999964

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.61  E-value=0.00017  Score=66.09  Aligned_cols=80  Identities=26%  Similarity=0.426  Sum_probs=57.9

Q ss_pred             HHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEE
Q 008516            7 LEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITA   86 (563)
Q Consensus         7 q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~   86 (563)
                      ...+.+++++|+|+||.|..+++.|...|+++|+|+.          |.         ..|++.+++.+    +..++..
T Consensus         7 ~~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~n----------Rt---------~~ra~~l~~~~----~~~~~~~   63 (135)
T PF01488_consen    7 FGDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVN----------RT---------PERAEALAEEF----GGVNIEA   63 (135)
T ss_dssp             HSTGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEE----------SS---------HHHHHHHHHHH----TGCSEEE
T ss_pred             cCCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEE----------CC---------HHHHHHHHHHc----Cccccce
Confidence            3468999999999999999999999999999999975          32         25677666666    3333433


Q ss_pred             eccCCCCCcchHhhcccccEEEEccCCH
Q 008516           87 HHANVKDPKFNVEFFKQFNVVLNGLDNL  114 (563)
Q Consensus        87 ~~~~i~~~~~~~~~~~~~dvVi~alDn~  114 (563)
                      ..-.  +   -.+.+.++|+||+|+...
T Consensus        64 ~~~~--~---~~~~~~~~DivI~aT~~~   86 (135)
T PF01488_consen   64 IPLE--D---LEEALQEADIVINATPSG   86 (135)
T ss_dssp             EEGG--G---HCHHHHTESEEEE-SSTT
T ss_pred             eeHH--H---HHHHHhhCCeEEEecCCC
Confidence            3211  0   125678999999998754

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.50  E-value=0.00093  Score=65.63  Aligned_cols=93  Identities=15%  Similarity=0.164  Sum_probs=64.8

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      .|.+++|+|||.|.+|...++.|...| .+|++++.+.      .+               .+.+..    +.-.+....
T Consensus         7 ~l~~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~~~------~~---------------~l~~l~----~~~~i~~~~   60 (202)
T PRK06718          7 DLSNKRVVIVGGGKVAGRRAITLLKYG-AHIVVISPEL------TE---------------NLVKLV----EEGKIRWKQ   60 (202)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEcCCC------CH---------------HHHHHH----hCCCEEEEe
Confidence            378999999999999999999999999 6899986421      00               011111    111233322


Q ss_pred             cCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEE
Q 008516           89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVE  133 (563)
Q Consensus        89 ~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~  133 (563)
                      ..     +....+.++|+||.|+++.+.-..+.+.| ..++++-.
T Consensus        61 ~~-----~~~~~l~~adlViaaT~d~elN~~i~~~a-~~~~lvn~   99 (202)
T PRK06718         61 KE-----FEPSDIVDAFLVIAATNDPRVNEQVKEDL-PENALFNV   99 (202)
T ss_pred             cC-----CChhhcCCceEEEEcCCCHHHHHHHHHHH-HhCCcEEE
Confidence            22     33455789999999999999999998899 45665433

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.35  E-value=0.0005  Score=60.06  Aligned_cols=89  Identities=18%  Similarity=0.291  Sum_probs=63.8

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      .|++.+|+|||.|.+|..=++.|..+| .+++++..+. +.                     +.       ..++  .+.
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~g-A~v~vis~~~-~~---------------------~~-------~~i~--~~~   51 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAG-AKVTVISPEI-EF---------------------SE-------GLIQ--LIR   51 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCT-BEEEEEESSE-HH---------------------HH-------TSCE--EEE
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEECCch-hh---------------------hh-------hHHH--HHh
Confidence            478999999999999999999999999 5899998665 00                     00       1122  222


Q ss_pred             cCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEec
Q 008516           89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG  135 (563)
Q Consensus        89 ~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~g  135 (563)
                      ..     +. +.+.++++|+.|+++.+....+.+.|++.++|+-.+.
T Consensus        52 ~~-----~~-~~l~~~~lV~~at~d~~~n~~i~~~a~~~~i~vn~~D   92 (103)
T PF13241_consen   52 RE-----FE-EDLDGADLVFAATDDPELNEAIYADARARGILVNVVD   92 (103)
T ss_dssp             SS------G-GGCTTESEEEE-SS-HHHHHHHHHHHHHTTSEEEETT
T ss_pred             hh-----HH-HHHhhheEEEecCCCHHHHHHHHHHHhhCCEEEEECC
Confidence            22     22 4578899999999999999999999999999765543

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.22  E-value=0.0043  Score=61.10  Aligned_cols=96  Identities=19%  Similarity=0.240  Sum_probs=71.1

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      |++++|+|||.|.+|..-++.|...|. ++++++.+.-                     ..+.+ +.+.   -+|+.+..
T Consensus         7 l~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~---------------------~~l~~-l~~~---~~i~~~~~   60 (205)
T TIGR01470         7 LEGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELE---------------------SELTL-LAEQ---GGITWLAR   60 (205)
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCC---------------------HHHHH-HHHc---CCEEEEeC
Confidence            678999999999999999999999995 7999986421                     00111 1111   14555544


Q ss_pred             CCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEecc
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGT  136 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt  136 (563)
                      ..     ....+.++++||.|+++.+....+-..|+..++|+-.++-
T Consensus        61 ~~-----~~~dl~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~  102 (205)
T TIGR01470        61 CF-----DADILEGAFLVIAATDDEELNRRVAHAARARGVPVNVVDD  102 (205)
T ss_pred             CC-----CHHHhCCcEEEEECCCCHHHHHHHHHHHHHcCCEEEECCC
Confidence            43     3455789999999999988888999999999998855543

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=97.02  E-value=0.0019  Score=69.34  Aligned_cols=96  Identities=26%  Similarity=0.454  Sum_probs=65.9

Q ss_pred             EEEECCcHHHHHHHHHHHHhCC-CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCCC
Q 008516           15 VLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD   93 (563)
Q Consensus        15 VlvvGaGgiG~ellknLal~Gv-g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~~   93 (563)
                      |+|+|+|.+|..+++.|+..+- .++++.|.+.                   .|++.+++.+    ...++....-++.+
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~-------------------~~~~~~~~~~----~~~~~~~~~~d~~~   57 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNP-------------------EKAERLAEKL----LGDRVEAVQVDVND   57 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSH-------------------HHHHHHHT------TTTTEEEEE--TTT
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCH-------------------HHHHHHHhhc----cccceeEEEEecCC
Confidence            7899999999999999999884 4899987332                   2333333322    34467777766755


Q ss_pred             CcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEe
Q 008516           94 PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVES  134 (563)
Q Consensus        94 ~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~  134 (563)
                      ...-.+++++.|+||+|+... ....+-+.|.+.+++++|.
T Consensus        58 ~~~l~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g~~yvD~   97 (386)
T PF03435_consen   58 PESLAELLRGCDVVINCAGPF-FGEPVARACIEAGVHYVDT   97 (386)
T ss_dssp             HHHHHHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT-EEEES
T ss_pred             HHHHHHHHhcCCEEEECCccc-hhHHHHHHHHHhCCCeecc
Confidence            443467899999999999765 5667889999999999994

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=97.02  E-value=0.0066  Score=57.22  Aligned_cols=85  Identities=14%  Similarity=0.231  Sum_probs=61.3

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      .|++.+|+|||.|.+|...++.|...|. ++++|+.+..+                         .+.++ +.  ++...
T Consensus        10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIsp~~~~-------------------------~l~~l-~~--i~~~~   60 (157)
T PRK06719         10 NLHNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVSPEICK-------------------------EMKEL-PY--ITWKQ   60 (157)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCccCH-------------------------HHHhc-cC--cEEEe
Confidence            4789999999999999999999999996 78998654211                         01111 11  22222


Q ss_pred             cCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhc
Q 008516           89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA  127 (563)
Q Consensus        89 ~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~  127 (563)
                      .     .+....+.++|+|+.|+|+.+.-..+.+.|...
T Consensus        61 ~-----~~~~~dl~~a~lViaaT~d~e~N~~i~~~a~~~   94 (157)
T PRK06719         61 K-----TFSNDDIKDAHLIYAATNQHAVNMMVKQAAHDF   94 (157)
T ss_pred             c-----ccChhcCCCceEEEECCCCHHHHHHHHHHHHHC
Confidence            2     233455789999999999999888888888764

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=96.86  E-value=0.011  Score=58.81  Aligned_cols=96  Identities=18%  Similarity=0.245  Sum_probs=69.7

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      +++.+|+|||.|.+|..=++.|...|. +||||-++.-+                  .   +.+ +.+ ++  +|+.+..
T Consensus        23 ~~~~~VLVVGGG~VA~RK~~~Ll~~gA-~VtVVap~i~~------------------e---l~~-l~~-~~--~i~~~~r   76 (223)
T PRK05562         23 SNKIKVLIIGGGKAAFIKGKTFLKKGC-YVYILSKKFSK------------------E---FLD-LKK-YG--NLKLIKG   76 (223)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCCCH------------------H---HHH-HHh-CC--CEEEEeC
Confidence            567899999999999999999999994 79998654210                  0   001 111 22  3444443


Q ss_pred             CCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEecc
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGT  136 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt  136 (563)
                      .     |....+.++++||.|+|+.+.-..+.+.|...++++..+..
T Consensus        77 ~-----~~~~dl~g~~LViaATdD~~vN~~I~~~a~~~~~lvn~vd~  118 (223)
T PRK05562         77 N-----YDKEFIKDKHLIVIATDDEKLNNKIRKHCDRLYKLYIDCSD  118 (223)
T ss_pred             C-----CChHHhCCCcEEEECCCCHHHHHHHHHHHHHcCCeEEEcCC
Confidence            3     34556789999999999999999999999999988776543

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=96.63  E-value=0.0081  Score=62.23  Aligned_cols=85  Identities=19%  Similarity=0.302  Sum_probs=55.0

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      +++++++|+|+||+|..++..|+..|+.+|+|++.+.                -...|++.+++.+.+..+.+.+...  
T Consensus       124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~----------------~~~~~a~~l~~~l~~~~~~~~~~~~--  185 (289)
T PRK12548        124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD----------------DFYERAEQTAEKIKQEVPECIVNVY--  185 (289)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc----------------hHHHHHHHHHHHHhhcCCCceeEEe--
Confidence            4567899999999999999999999999999986321                0123566666666555454444322  


Q ss_pred             CCCCCcchHhhcccccEEEEccC
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGLD  112 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~alD  112 (563)
                      ++.+...-.+.+..+|+|||++-
T Consensus       186 d~~~~~~~~~~~~~~DilINaTp  208 (289)
T PRK12548        186 DLNDTEKLKAEIASSDILVNATL  208 (289)
T ss_pred             chhhhhHHHhhhccCCEEEEeCC
Confidence            22211111234566788888763

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=96.52  E-value=0.0077  Score=62.16  Aligned_cols=77  Identities=23%  Similarity=0.304  Sum_probs=52.6

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      +++++|+|+|+||.|..++..|+..|+++|+|++.+                   ..|++.+++.+....   .+.....
T Consensus       123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt-------------------~~ka~~La~~~~~~~---~~~~~~~  180 (282)
T TIGR01809       123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRN-------------------PDKLSRLVDLGVQVG---VITRLEG  180 (282)
T ss_pred             cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC-------------------HHHHHHHHHHhhhcC---cceeccc
Confidence            467899999999999999999999999999998532                   247777766654321   1211110


Q ss_pred             CCCCCcchHhhcccccEEEEccC
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGLD  112 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~alD  112 (563)
                       . + . ......++|+||+|+-
T Consensus       181 -~-~-~-~~~~~~~~DiVInaTp  199 (282)
T TIGR01809       181 -D-S-G-GLAIEKAAEVLVSTVP  199 (282)
T ss_pred             -h-h-h-hhhcccCCCEEEECCC
Confidence             0 0 0 0133467999999975

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=96.50  E-value=0.0093  Score=61.65  Aligned_cols=79  Identities=23%  Similarity=0.352  Sum_probs=54.4

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      +.+++++|+|+||.|..++-.|+..|+.+|+|+|.+                   ..|++.+++.+....+...+.... 
T Consensus       125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~-------------------~~ka~~La~~~~~~~~~~~~~~~~-  184 (283)
T PRK14027        125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD-------------------TSRAQALADVINNAVGREAVVGVD-  184 (283)
T ss_pred             cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC-------------------HHHHHHHHHHHhhccCcceEEecC-
Confidence            456789999999999999999999999999998633                   247777777765443332222211 


Q ss_pred             CCCCCcchHhhcccccEEEEccC
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGLD  112 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~alD  112 (563)
                       ..  .. .+...++|+||||+.
T Consensus       185 -~~--~~-~~~~~~~divINaTp  203 (283)
T PRK14027        185 -AR--GI-EDVIAAADGVVNATP  203 (283)
T ss_pred             -Hh--HH-HHHHhhcCEEEEcCC
Confidence             10  00 123467899999874

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=96.42  E-value=0.0064  Score=65.66  Aligned_cols=77  Identities=27%  Similarity=0.347  Sum_probs=59.1

Q ss_pred             HHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516            8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus         8 ~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      ..|.+++|+|||+|-+|.-++++|...|+.+|+|.          ||++         .||+-+++.+.     .++...
T Consensus       174 ~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~Ia----------NRT~---------erA~~La~~~~-----~~~~~l  229 (414)
T COG0373         174 GSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIA----------NRTL---------ERAEELAKKLG-----AEAVAL  229 (414)
T ss_pred             cccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEE----------cCCH---------HHHHHHHHHhC-----CeeecH
Confidence            34788899999999999999999999999999995          6764         47777777664     222222


Q ss_pred             ccCCCCCcchHhhcccccEEEEccCCHH
Q 008516           88 HANVKDPKFNVEFFKQFNVVLNGLDNLD  115 (563)
Q Consensus        88 ~~~i~~~~~~~~~~~~~dvVi~alDn~~  115 (563)
                      .       .-.+++..+|+||.++..+.
T Consensus       230 ~-------el~~~l~~~DvVissTsa~~  250 (414)
T COG0373         230 E-------ELLEALAEADVVISSTSAPH  250 (414)
T ss_pred             H-------HHHHhhhhCCEEEEecCCCc
Confidence            1       12467899999999987644

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=96.28  E-value=0.015  Score=59.80  Aligned_cols=74  Identities=20%  Similarity=0.373  Sum_probs=52.1

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      +.+++|+|+|+||+|..+++.|...|+.+|++++.+                   ..|++.+++.+....+ +.+   ..
T Consensus       121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~-------------------~~~a~~l~~~~~~~~~-~~~---~~  177 (278)
T PRK00258        121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRT-------------------VERAEELAKLFGALGK-AEL---DL  177 (278)
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC-------------------HHHHHHHHHHhhhccc-eee---cc
Confidence            567899999999999999999999999999998632                   2356656655543221 121   10


Q ss_pred             CCCCCcchHhhcccccEEEEccC
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGLD  112 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~alD  112 (563)
                      .      ..+.+.++|+||+|+-
T Consensus       178 ~------~~~~~~~~DivInaTp  194 (278)
T PRK00258        178 E------LQEELADFDLIINATS  194 (278)
T ss_pred             c------chhccccCCEEEECCc
Confidence            1      1244678999999975

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=96.21  E-value=0.0089  Score=65.05  Aligned_cols=76  Identities=21%  Similarity=0.293  Sum_probs=54.1

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      .+.+++|+|+|+|+.|..++++|+..|+.+|+|+.          |.         ..|++.+++.+.    ...+..+.
T Consensus       178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~n----------Rt---------~~ra~~La~~~~----~~~~~~~~  234 (414)
T PRK13940        178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLAN----------RT---------IEKAQKITSAFR----NASAHYLS  234 (414)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEC----------CC---------HHHHHHHHHHhc----CCeEecHH
Confidence            46789999999999999999999999999999973          32         135555555432    12222111


Q ss_pred             cCCCCCcchHhhcccccEEEEccCCH
Q 008516           89 ANVKDPKFNVEFFKQFNVVLNGLDNL  114 (563)
Q Consensus        89 ~~i~~~~~~~~~~~~~dvVi~alDn~  114 (563)
                             ...+.+.++|+||+|+..+
T Consensus       235 -------~l~~~l~~aDiVI~aT~a~  253 (414)
T PRK13940        235 -------ELPQLIKKADIIIAAVNVL  253 (414)
T ss_pred             -------HHHHHhccCCEEEECcCCC
Confidence                   1146688999999998754

>PRK04148 hypothetical protein; Provisional

Probab=96.19  E-value=0.057  Score=49.59  Aligned_cols=96  Identities=24%  Similarity=0.416  Sum_probs=73.0

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      ++.++++||+| -|..+++.|+..|. .++.+|.+.                   ...+.+++    .    .+++..++
T Consensus        16 ~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~-------------------~aV~~a~~----~----~~~~v~dD   66 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINE-------------------KAVEKAKK----L----GLNAFVDD   66 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCH-------------------HHHHHHHH----h----CCeEEECc
Confidence            34679999999 99999999999996 788888332                   12222222    2    24566677


Q ss_pred             CCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccc
Q 008516           91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT  137 (563)
Q Consensus        91 i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~  137 (563)
                      +.+.  +.++++++|+|....-.++....+-+++.+.+.+++-.-..
T Consensus        67 lf~p--~~~~y~~a~liysirpp~el~~~~~~la~~~~~~~~i~~l~  111 (134)
T PRK04148         67 LFNP--NLEIYKNAKLIYSIRPPRDLQPFILELAKKINVPLIIKPLS  111 (134)
T ss_pred             CCCC--CHHHHhcCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence            7654  46789999999999999999999999999999988765433

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.16  E-value=0.04  Score=58.00  Aligned_cols=165  Identities=13%  Similarity=0.137  Sum_probs=93.7

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK   92 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~   92 (563)
                      ++|.|||+|-+|+.++..++..|. .++++|.+.=....+            +.+.....+.+.+..+.  -.....++.
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~------------~~~i~~~~~~~~~~~~~--~~~~~~~i~   72 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAAL------------RANVANAWPALERQGLA--PGASPARLR   72 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHH------------HHHHHHHHHHHHHcCCC--hhhHHhhce
Confidence            579999999999999999999997 688988554211110            01111111111111110  001111221


Q ss_pred             CCcchHhhcccccEEEEcc-CCHHHHHHHHHHHHhcCC--CEEEeccccceee-EEEEeCCCCccccccCCCCCCCCCce
Q 008516           93 DPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLAADV--PLVESGTTGFLGQ-VTVHVKGKTECYECQPKPAPKTYPVC  168 (563)
Q Consensus        93 ~~~~~~~~~~~~dvVi~al-Dn~~ar~~in~~c~~~~~--pli~~gt~G~~G~-v~v~~~~~t~Cy~C~~~~~~~~~p~c  168 (563)
                      -...-.+.++++|+|+.++ .+.+.+..+-+.....-.  .+|.+.|.|..-. +.-...+..-|...++-.++...|.-
T Consensus        73 ~~~~l~~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLV  152 (321)
T PRK07066         73 FVATIEACVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLV  152 (321)
T ss_pred             ecCCHHHHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceE
Confidence            1111235678999999986 456666554433322211  3788887765321 11112233345555565666677888


Q ss_pred             eeccCCCCchhHHHHHHHHHHHHHhC
Q 008516          169 TITSTPSKFVHCIVWAKDLLFAKLFG  194 (563)
Q Consensus       169 ti~~~p~~~~hci~~a~~~lf~~lf~  194 (563)
                      .|...+.+..-.+.++.+ ++.. .|
T Consensus       153 EVv~g~~T~~e~~~~~~~-f~~~-lG  176 (321)
T PRK07066        153 EVLGGERTAPEAVDAAMG-IYRA-LG  176 (321)
T ss_pred             EEeCCCCCCHHHHHHHHH-HHHH-cC
Confidence            888888888888999998 4554 44

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=96.02  E-value=0.024  Score=58.83  Aligned_cols=84  Identities=21%  Similarity=0.298  Sum_probs=54.1

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      +++++++|+|+||.+..++-.|+..|+++|+|++.+.                -...|++.+++.+....+ ..+.... 
T Consensus       122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~----------------~~~~ka~~la~~~~~~~~-~~~~~~~-  183 (288)
T PRK12749        122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD----------------EFFDKALAFAQRVNENTD-CVVTVTD-  183 (288)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc----------------cHHHHHHHHHHHhhhccC-ceEEEec-
Confidence            4667899999999999999999999999999986221                124577777777654322 2222221 


Q ss_pred             CCCCCcchHhhcccccEEEEccC
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGLD  112 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~alD  112 (563)
                       ..+...-.+-..++|+||||+-
T Consensus       184 -~~~~~~l~~~~~~aDivINaTp  205 (288)
T PRK12749        184 -LADQQAFAEALASADILTNGTK  205 (288)
T ss_pred             -hhhhhhhhhhcccCCEEEECCC
Confidence             1100000123467899999863

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=95.99  E-value=0.049  Score=54.37  Aligned_cols=99  Identities=18%  Similarity=0.279  Sum_probs=65.8

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK   92 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~   92 (563)
                      ++++|+|+|.+|..++++|+..|- .+++||.|.-                      .+.+.+.   ......++..+.+
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~----------------------~~~~~~~---~~~~~~~v~gd~t   54 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEE----------------------RVEEFLA---DELDTHVVIGDAT   54 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHH----------------------HHHHHhh---hhcceEEEEecCC
Confidence            479999999999999999999997 5777775431                      1112121   1223444544444


Q ss_pred             CCcch-HhhcccccEEEEccCCHHHHHHHHHHHHh-cCCCEEEeccc
Q 008516           93 DPKFN-VEFFKQFNVVLNGLDNLDARRHVNRLCLA-ADVPLVESGTT  137 (563)
Q Consensus        93 ~~~~~-~~~~~~~dvVi~alDn~~ar~~in~~c~~-~~~pli~~gt~  137 (563)
                      +...- ..-+.++|+++.++++...-..+-.++.+ .++|-+.+-+.
T Consensus        55 ~~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~  101 (225)
T COG0569          55 DEDVLEEAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARAR  101 (225)
T ss_pred             CHHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEec
Confidence            32211 22367899999999987777777677655 78988877543

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=95.87  E-value=0.021  Score=52.75  Aligned_cols=35  Identities=40%  Similarity=0.587  Sum_probs=30.8

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +.+++|+|+|+|++|..+++.|...|...++++|.
T Consensus        17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r   51 (155)
T cd01065          17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNR   51 (155)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcC
Confidence            45789999999999999999999998667888873

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=95.83  E-value=0.035  Score=57.39  Aligned_cols=75  Identities=23%  Similarity=0.383  Sum_probs=53.7

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      ..++++|+|+||.+-.++..|+..|+.+|+|++          |.         ..|++.+++...+..+.+....... 
T Consensus       125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~N----------Rt---------~~ra~~La~~~~~~~~~~~~~~~~~-  184 (283)
T COG0169         125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVN----------RT---------RERAEELADLFGELGAAVEAAALAD-  184 (283)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEe----------CC---------HHHHHHHHHHhhhcccccccccccc-
Confidence            358899999999999999999999999999974          32         3578888888877765222211110 


Q ss_pred             CCCCcchHhhcccccEEEEccC
Q 008516           91 VKDPKFNVEFFKQFNVVLNGLD  112 (563)
Q Consensus        91 i~~~~~~~~~~~~~dvVi~alD  112 (563)
                             .+-..++|+||||+.
T Consensus       185 -------~~~~~~~dliINaTp  199 (283)
T COG0169         185 -------LEGLEEADLLINATP  199 (283)
T ss_pred             -------cccccccCEEEECCC
Confidence                   011117899999975

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.82  E-value=0.04  Score=57.01  Aligned_cols=165  Identities=15%  Similarity=0.205  Sum_probs=88.2

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCc---cccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLN---RQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLn---RqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      .+|.|||+|.+|+.++.+|++.|. .++++|.+.=......   ++.+=+...-|+-..+.+.+.+.++.    +     
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~----~-----   75 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR----F-----   75 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE----e-----
Confidence            489999999999999999999997 6999985533222100   00000001112222221222222211    1     


Q ss_pred             CCCCCcchHhhcccccEEEEcc-CCHHHHHHHHHHHHh----cCCCEEEeccccce-eeEEEEeCCCCccccccCCCCCC
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLA----ADVPLVESGTTGFL-GQVTVHVKGKTECYECQPKPAPK  163 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~al-Dn~~ar~~in~~c~~----~~~pli~~gt~G~~-G~v~v~~~~~t~Cy~C~~~~~~~  163 (563)
                        . ..+  +-++++|+|+.|+ ++.+.+..+-.....    .+. ++-+.|.+.. ..+.........+...+.-.++.
T Consensus        76 --~-~~~--~~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~-il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~  149 (286)
T PRK07819         76 --T-TDL--GDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDA-VLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVP  149 (286)
T ss_pred             --e-CCH--HHhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCc-EEEECCCCCCHHHHHhhcCCCccEEEEecCCCcc
Confidence              1 111  3368999999986 556666655433332    233 3444443321 11111112222233444434444


Q ss_pred             CCCceeeccCCCCchhHHHHHHHHHHHHHhC
Q 008516          164 TYPVCTITSTPSKFVHCIVWAKDLLFAKLFG  194 (563)
Q Consensus       164 ~~p~cti~~~p~~~~hci~~a~~~lf~~lf~  194 (563)
                      ..|..++...+.+....+++++. ++....+
T Consensus       150 ~~~lvElv~~~~T~~~~~~~~~~-~~~~~lg  179 (286)
T PRK07819        150 VLPLVELVPTLVTSEATVARAEE-FASDVLG  179 (286)
T ss_pred             cCceEEEeCCCCCCHHHHHHHHH-HHHHhCC
Confidence            55777888888888999999998 4454454

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.73  E-value=0.037  Score=57.04  Aligned_cols=32  Identities=34%  Similarity=0.636  Sum_probs=28.9

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .+|.|+|+|.+|..++..|+..|. +++++|.+
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~   35 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDIS   35 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCC
Confidence            579999999999999999999997 69999854

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.61  E-value=0.13  Score=53.43  Aligned_cols=159  Identities=13%  Similarity=0.140  Sum_probs=79.5

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCc---eEE-Eec
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQM---SIT-AHH   88 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v---~I~-~~~   88 (563)
                      ++|.|||+|.+|+.++..|+..|. +++++|.+.=.                   .+.+.+.+.+.....   .+. ...
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~   64 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVMEGA-------------------LERARGVIERALGVYAPLGIASAGM   64 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHH-------------------HHHHHHHHHHHHHHhhhcccHHHHh
Confidence            479999999999999999999997 68888854311                   111211111000000   000 000


Q ss_pred             cCCCCCcchHhhcccccEEEEccCCHH-H-HHHHHHHHHh-cCCCEEEecccccee-eEEEEeCCCCccccccCCCCCCC
Q 008516           89 ANVKDPKFNVEFFKQFNVVLNGLDNLD-A-RRHVNRLCLA-ADVPLVESGTTGFLG-QVTVHVKGKTECYECQPKPAPKT  164 (563)
Q Consensus        89 ~~i~~~~~~~~~~~~~dvVi~alDn~~-a-r~~in~~c~~-~~~pli~~gt~G~~G-~v~v~~~~~t~Cy~C~~~~~~~~  164 (563)
                      .++.-.....+..+++|+||.|+-... . +..+.++... .+..+|.+.+.|..- .+.-..+....+..+++-.++..
T Consensus        65 ~~i~~~~~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~~p~~~  144 (311)
T PRK06130         65 GRIRMEAGLAAAVSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFFTPADV  144 (311)
T ss_pred             hceEEeCCHHHHhccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccCCCCcc
Confidence            001000112345788999999985432 2 3333333221 223356666665321 11111222233444444434433


Q ss_pred             CCceeeccCCCCchhHHHHHHHHHHHHH
Q 008516          165 YPVCTITSTPSKFVHCIVWAKDLLFAKL  192 (563)
Q Consensus       165 ~p~cti~~~p~~~~hci~~a~~~lf~~l  192 (563)
                      .+..++...+......+.++++ +|+.+
T Consensus       145 ~~l~~i~~g~~t~~~~~~~v~~-l~~~~  171 (311)
T PRK06130        145 IPLVEVVRGDKTSPQTVATTMA-LLRSI  171 (311)
T ss_pred             CceEEEeCCCCCCHHHHHHHHH-HHHHc
Confidence            4455555555555666788887 56654

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.57  E-value=0.049  Score=59.56  Aligned_cols=95  Identities=22%  Similarity=0.229  Sum_probs=60.3

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      +++++|+|+|+|++|-++++.|+..|. +++++|.+.-+                  ..+-..+.+.+.    .+..+..
T Consensus         3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~~~------------------~~~~~~~~l~~~----~~~~~~~   59 (450)
T PRK14106          3 LKGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKEED------------------QLKEALEELGEL----GIELVLG   59 (450)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchH------------------HHHHHHHHHHhc----CCEEEeC
Confidence            578999999999999999999999997 69998865310                  111111223222    2333333


Q ss_pred             CCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEE
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVE  133 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~  133 (563)
                      +..     .+...++|+||.+...... .-.-..|++.++|++.
T Consensus        60 ~~~-----~~~~~~~d~vv~~~g~~~~-~~~~~~a~~~~i~~~~   97 (450)
T PRK14106         60 EYP-----EEFLEGVDLVVVSPGVPLD-SPPVVQAHKKGIEVIG   97 (450)
T ss_pred             Ccc-----hhHhhcCCEEEECCCCCCC-CHHHHHHHHCCCcEEe
Confidence            332     2446789999997654222 2244566777888764

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=95.53  E-value=0.028  Score=53.67  Aligned_cols=35  Identities=26%  Similarity=0.367  Sum_probs=30.8

Q ss_pred             HHcCCcEEEECCcHH-HHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVGAGGI-GCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvGaGgi-G~ellknLal~Gvg~I~iiD~   44 (563)
                      .|.+++|+|||+|.+ |..++++|...|+ ++++++.
T Consensus        41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r   76 (168)
T cd01080          41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHS   76 (168)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEEC
Confidence            478899999999985 8889999999998 6888873

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=95.52  E-value=0.056  Score=56.55  Aligned_cols=82  Identities=26%  Similarity=0.352  Sum_probs=55.6

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      +.+.+|+|+|+|.+|..+++.|...|..+++++|.+.                   .|+..+++.+.     ..+.... 
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~-------------------~ra~~la~~~g-----~~~~~~~-  230 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTY-------------------ERAEELAKELG-----GNAVPLD-  230 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH-------------------HHHHHHHHHcC-----CeEEeHH-
Confidence            5789999999999999999999998999999987432                   34444444331     1221111 


Q ss_pred             CCCCCcchHhhcccccEEEEccCCHHHHHHHHH
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNR  122 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~  122 (563)
                      .      ..+.+.++|+||.|+.+......+..
T Consensus       231 ~------~~~~l~~aDvVi~at~~~~~~~~~~~  257 (311)
T cd05213         231 E------LLELLNEADVVISATGAPHYAKIVER  257 (311)
T ss_pred             H------HHHHHhcCCEEEECCCCCchHHHHHH
Confidence            0      13456789999999987766333333

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=95.44  E-value=0.054  Score=53.57  Aligned_cols=97  Identities=16%  Similarity=0.269  Sum_probs=69.2

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      +|.+++|+|||.|.+|.-=++.|..+|. +++++-.+. +                 +.   .+..+. .+   ++....
T Consensus         9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga-~v~Vvs~~~-~-----------------~e---l~~~~~-~~---~i~~~~   62 (210)
T COG1648           9 DLEGKKVLVVGGGSVALRKARLLLKAGA-DVTVVSPEF-E-----------------PE---LKALIE-EG---KIKWIE   62 (210)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhcCC-EEEEEcCCc-c-----------------HH---HHHHHH-hc---Ccchhh
Confidence            4678999999999999999999999996 688874433 1                 11   111111 11   132222


Q ss_pred             cCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEecc
Q 008516           89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGT  136 (563)
Q Consensus        89 ~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt  136 (563)
                           ..|+.+.+..+++|+.|+||.+.-..+.+.|..+++|.-.+.-
T Consensus        63 -----~~~~~~~~~~~~lviaAt~d~~ln~~i~~~a~~~~i~vNv~D~  105 (210)
T COG1648          63 -----REFDAEDLDDAFLVIAATDDEELNERIAKAARERRILVNVVDD  105 (210)
T ss_pred             -----cccChhhhcCceEEEEeCCCHHHHHHHHHHHHHhCCceeccCC
Confidence                 2345566777999999999999999999999999997655543

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=95.39  E-value=0.12  Score=46.27  Aligned_cols=96  Identities=22%  Similarity=0.294  Sum_probs=58.1

Q ss_pred             cEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCC-CCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516           14 KVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSH-VGQSKAKVARDAVLKFRPQMSITAHHANV   91 (563)
Q Consensus        14 ~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~d-iGk~Ka~va~~~l~~~np~v~I~~~~~~i   91 (563)
                      ||.||| .|-+|.++++.|...---++..               ++..+. .|+.=+....    ......++....   
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~---------------~~~~~~~~g~~~~~~~~----~~~~~~~~~~~~---   58 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVA---------------LVSSSRSAGKPLSEVFP----HPKGFEDLSVED---   58 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEE---------------EEESTTTTTSBHHHTTG----GGTTTEEEBEEE---
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEE---------------eeeeccccCCeeehhcc----ccccccceeEee---
Confidence            799999 8999999999999843222222               122233 5654333221    111111222211   


Q ss_pred             CCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEecc
Q 008516           92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGT  136 (563)
Q Consensus        92 ~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt  136 (563)
                          .+.+-+.+.|+|+.|+++..++.+..+. ...++++||.+.
T Consensus        59 ----~~~~~~~~~Dvvf~a~~~~~~~~~~~~~-~~~g~~ViD~s~   98 (121)
T PF01118_consen   59 ----ADPEELSDVDVVFLALPHGASKELAPKL-LKAGIKVIDLSG   98 (121)
T ss_dssp             ----TSGHHHTTESEEEE-SCHHHHHHHHHHH-HHTTSEEEESSS
T ss_pred             ----cchhHhhcCCEEEecCchhHHHHHHHHH-hhCCcEEEeCCH
Confidence                1234469999999999987776666555 888999998653

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK10637 cysG siroheme synthase; Provisional

Probab=95.34  E-value=0.09  Score=58.06  Aligned_cols=95  Identities=12%  Similarity=0.147  Sum_probs=69.2

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      .|++.+|+|||.|.+|..=++.|...|. +|++|-.+.            .             +.++++-..-+|+.+.
T Consensus         9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga-~v~visp~~------------~-------------~~~~~l~~~~~i~~~~   62 (457)
T PRK10637          9 QLRDRDCLLVGGGDVAERKARLLLDAGA-RLTVNALAF------------I-------------PQFTAWADAGMLTLVE   62 (457)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCC------------C-------------HHHHHHHhCCCEEEEe
Confidence            4789999999999999999999999996 788874331            1             0111111122344444


Q ss_pred             cCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEe
Q 008516           89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVES  134 (563)
Q Consensus        89 ~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~  134 (563)
                      ..     |..+.++++++|+.|+|+.+.-..+.+.|...++++-.+
T Consensus        63 ~~-----~~~~dl~~~~lv~~at~d~~~n~~i~~~a~~~~~lvN~~  103 (457)
T PRK10637         63 GP-----FDESLLDTCWLAIAATDDDAVNQRVSEAAEARRIFCNVV  103 (457)
T ss_pred             CC-----CChHHhCCCEEEEECCCCHHHhHHHHHHHHHcCcEEEEC
Confidence            33     345668899999999999999999999999998865434

>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]

Probab=95.25  E-value=0.048  Score=54.17  Aligned_cols=80  Identities=25%  Similarity=0.386  Sum_probs=59.9

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      +.+++++++| +||||-+++|.|..-|+..+.|.|               +.+.      -.+...++++||.+++..+.
T Consensus         3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~---------------~~En------~~a~akL~ai~p~~~v~F~~   61 (261)
T KOG4169|consen    3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDD---------------SEEN------PEAIAKLQAINPSVSVIFIK   61 (261)
T ss_pred             ccCceEEEecCCchhhHHHHHHHHHcCchheeehh---------------hhhC------HHHHHHHhccCCCceEEEEE
Confidence            4577888885 999999999999999998877754               1111      23556789999999999999


Q ss_pred             cCCCCCcchH-------hhcccccEEEEc
Q 008516           89 ANVKDPKFNV-------EFFKQFNVVLNG  110 (563)
Q Consensus        89 ~~i~~~~~~~-------~~~~~~dvVi~a  110 (563)
                      .++++...-.       .-|...|++||.
T Consensus        62 ~DVt~~~~~~~~f~ki~~~fg~iDIlINg   90 (261)
T KOG4169|consen   62 CDVTNRGDLEAAFDKILATFGTIDILING   90 (261)
T ss_pred             eccccHHHHHHHHHHHHHHhCceEEEEcc
Confidence            9986532111       235677999994

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=95.24  E-value=0.073  Score=55.54  Aligned_cols=73  Identities=22%  Similarity=0.337  Sum_probs=50.0

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCC-eEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC----CCceEEEe
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQ-DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR----PQMSITAH   87 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg-~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~n----p~v~I~~~   87 (563)
                      +||.|+|+|++|+.++..|+..|+. +|.++|.+                   ..|++..+..+.+..    ..+++.. 
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~-------------------~~~~~~~a~dL~~~~~~~~~~~~i~~-   60 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDIN-------------------EEKAEGEALDLEDALAFLPSPVKIKA-   60 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------cchhhHhHhhHHHHhhccCCCeEEEc-
Confidence            3799999999999999999999985 89999843                   234444455554332    1222321 


Q ss_pred             ccCCCCCcchHhhcccccEEEEccCC
Q 008516           88 HANVKDPKFNVEFFKQFNVVLNGLDN  113 (563)
Q Consensus        88 ~~~i~~~~~~~~~~~~~dvVi~alDn  113 (563)
                       .       +.+-++++|+||++...
T Consensus        61 -~-------~~~~l~~aDIVIitag~   78 (306)
T cd05291          61 -G-------DYSDCKDADIVVITAGA   78 (306)
T ss_pred             -C-------CHHHhCCCCEEEEccCC
Confidence             1       12336899999998764

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=95.01  E-value=0.075  Score=51.39  Aligned_cols=83  Identities=20%  Similarity=0.239  Sum_probs=54.1

Q ss_pred             HHcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516            9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus         9 kL~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      .+++++++|+|+ |++|..+++.|+..| .++++++.+                   ..|++.+++.+.+.. ...+...
T Consensus        25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g-~~V~l~~R~-------------------~~~~~~l~~~l~~~~-~~~~~~~   83 (194)
T cd01078          25 DLKGKTAVVLGGTGPVGQRAAVLLAREG-ARVVLVGRD-------------------LERAQKAADSLRARF-GEGVGAV   83 (194)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCC-------------------HHHHHHHHHHHHhhc-CCcEEEe
Confidence            457789999996 999999999999988 488887532                   245555666554322 2333332


Q ss_pred             ccCCCCCcchHhhcccccEEEEccCCH
Q 008516           88 HANVKDPKFNVEFFKQFNVVLNGLDNL  114 (563)
Q Consensus        88 ~~~i~~~~~~~~~~~~~dvVi~alDn~  114 (563)
                        ...+.....+.++++|+||+++...
T Consensus        84 --~~~~~~~~~~~~~~~diVi~at~~g  108 (194)
T cd01078          84 --ETSDDAARAAAIKGADVVFAAGAAG  108 (194)
T ss_pred             --eCCCHHHHHHHHhcCCEEEECCCCC
Confidence              1111111235678899999987643

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=94.97  E-value=0.098  Score=62.82  Aligned_cols=99  Identities=21%  Similarity=0.278  Sum_probs=63.2

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCC-------------eEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHh
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQ-------------DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLK   77 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg-------------~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~   77 (563)
                      +.+||+|+|||.+|..+++.|+..+--             .+++.|.+                   ..+++.+++.   
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~-------------------~~~a~~la~~---  625 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLY-------------------LKDAKETVEG---  625 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCC-------------------HHHHHHHHHh---
Confidence            467999999999999999999976432             24444422                   2334433332   


Q ss_pred             hCCCceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEec
Q 008516           78 FRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG  135 (563)
Q Consensus        78 ~np~v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~g  135 (563)
                       .|+++  +..-++.+...-.+++++.|+||+|+-+ ..=..+.+.|.++++.+++..
T Consensus       626 -~~~~~--~v~lDv~D~e~L~~~v~~~DaVIsalP~-~~H~~VAkaAieaGkHvv~ek  679 (1042)
T PLN02819        626 -IENAE--AVQLDVSDSESLLKYVSQVDVVISLLPA-SCHAVVAKACIELKKHLVTAS  679 (1042)
T ss_pred             -cCCCc--eEEeecCCHHHHHHhhcCCCEEEECCCc-hhhHHHHHHHHHcCCCEEECc
Confidence             24332  2232233222223455789999999976 334557888999999998764

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=94.93  E-value=0.033  Score=55.64  Aligned_cols=37  Identities=27%  Similarity=0.532  Sum_probs=34.7

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCC--eEEEEeCC
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQ--DIHIIDMD   45 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg--~I~iiD~D   45 (563)
                      .+++.||+|+|+|+.|..+++.|+..|++  +|+|+|.+
T Consensus        22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~   60 (226)
T cd05311          22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK   60 (226)
T ss_pred             CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence            47889999999999999999999999999  99999976

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=94.79  E-value=0.12  Score=54.18  Aligned_cols=75  Identities=21%  Similarity=0.274  Sum_probs=50.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCC-eEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCc-eEEEecc
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQ-DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQM-SITAHHA   89 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg-~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v-~I~~~~~   89 (563)
                      ..||.|+|+|.+|+.++-.|+..|+. +|.|+|-                   -+.|+...+.-+.+..|.. ++....+
T Consensus         6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~-------------------~~~~~~g~~~Dl~~~~~~~~~~~i~~~   66 (315)
T PRK00066          6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDI-------------------NKEKAEGDAMDLSHAVPFTSPTKIYAG   66 (315)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CCchhHHHHHHHHhhccccCCeEEEeC
Confidence            46899999999999999999999985 7999883                   2334444455555554321 2222211


Q ss_pred             CCCCCcchHhhcccccEEEEccC
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGLD  112 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~alD  112 (563)
                             +.+-++++|+||.+..
T Consensus        67 -------~~~~~~~adivIitag   82 (315)
T PRK00066         67 -------DYSDCKDADLVVITAG   82 (315)
T ss_pred             -------CHHHhCCCCEEEEecC
Confidence                   1234799999988654

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=94.78  E-value=0.14  Score=57.15  Aligned_cols=88  Identities=19%  Similarity=0.263  Sum_probs=67.3

Q ss_pred             HHHHHHHcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCc
Q 008516            4 ERQLEAIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQM   82 (563)
Q Consensus         4 ~~~q~kL~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v   82 (563)
                      ++....+.+++|+|-|+ |++|+|+++.++..+.++|.++|.|.                   .|-..+...+++..|..
T Consensus       242 ~~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E-------------------~~~~~i~~el~~~~~~~  302 (588)
T COG1086         242 ELIGAMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDE-------------------YKLYLIDMELREKFPEL  302 (588)
T ss_pred             HHHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCch-------------------HHHHHHHHHHHhhCCCc
Confidence            34567789999999985 56899999999999999999987554                   44455677778888888


Q ss_pred             eEEEeccCCCCCcchHhhccc--ccEEEEc
Q 008516           83 SITAHHANVKDPKFNVEFFKQ--FNVVLNG  110 (563)
Q Consensus        83 ~I~~~~~~i~~~~~~~~~~~~--~dvVi~a  110 (563)
                      ++..+-+++.+..--...+++  .|+|+-|
T Consensus       303 ~~~~~igdVrD~~~~~~~~~~~kvd~VfHA  332 (588)
T COG1086         303 KLRFYIGDVRDRDRVERAMEGHKVDIVFHA  332 (588)
T ss_pred             ceEEEecccccHHHHHHHHhcCCCceEEEh
Confidence            888888888654333455565  6777765

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=94.73  E-value=0.11  Score=48.08  Aligned_cols=75  Identities=24%  Similarity=0.352  Sum_probs=52.0

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCCC-eEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC--ceEEEec
Q 008516           13 AKVLMVGA-GGIGCELLKTLALSGFQ-DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ--MSITAHH   88 (563)
Q Consensus        13 ~~VlvvGa-GgiG~ellknLal~Gvg-~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~--v~I~~~~   88 (563)
                      .||.|||+ |.+|+.++-.|+..|+. +|.|+|.+                   ..|++.-+.-+.+..+.  ..+....
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~-------------------~~~~~g~a~Dl~~~~~~~~~~~~i~~   61 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDIN-------------------EDKAEGEALDLSHASAPLPSPVRITS   61 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESS-------------------HHHHHHHHHHHHHHHHGSTEEEEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccC-------------------cccceeeehhhhhhhhhccccccccc
Confidence            48999999 99999999999999985 59999832                   23555555555544322  2333333


Q ss_pred             cCCCCCcchHhhcccccEEEEccCC
Q 008516           89 ANVKDPKFNVEFFKQFNVVLNGLDN  113 (563)
Q Consensus        89 ~~i~~~~~~~~~~~~~dvVi~alDn  113 (563)
                      +       +.+-+++.|+||.+...
T Consensus        62 ~-------~~~~~~~aDivvitag~   79 (141)
T PF00056_consen   62 G-------DYEALKDADIVVITAGV   79 (141)
T ss_dssp             S-------SGGGGTTESEEEETTST
T ss_pred             c-------cccccccccEEEEeccc
Confidence            2       23457899999997543

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=94.72  E-value=0.036  Score=53.36  Aligned_cols=163  Identities=15%  Similarity=0.266  Sum_probs=83.0

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCcccc---CCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQF---LFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        14 ~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqf---Lf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      +|.|||+|.+|.-++-.+++.|. +++++|.+.-.....-+..   |=+..+-|+...+.+.+.+.++.    +   ..+
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~----~---~~d   72 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS----F---TTD   72 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE----E---ESS
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc----c---ccC
Confidence            68999999999999999999997 7999997554322211110   00001112222233333333322    1   111


Q ss_pred             CCCCcchHhhcccccEEEEcc-CCHHHHHHHHHHHHhc--CCCEEEeccccce-eeEEEEeCCCCccccccCCCCCCCCC
Q 008516           91 VKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLAA--DVPLVESGTTGFL-GQVTVHVKGKTECYECQPKPAPKTYP  166 (563)
Q Consensus        91 i~~~~~~~~~~~~~dvVi~al-Dn~~ar~~in~~c~~~--~~pli~~gt~G~~-G~v~v~~~~~t~Cy~C~~~~~~~~~p  166 (563)
                      +      .+. .++|+||.|. .+.+.++.+-+.....  .-.++.+.|.++. ..+....+...-+...+.-.++..-|
T Consensus        73 l------~~~-~~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~  145 (180)
T PF02737_consen   73 L------EEA-VDADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMP  145 (180)
T ss_dssp             G------GGG-CTESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT--
T ss_pred             H------HHH-hhhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCc
Confidence            1      233 3999999986 5666666554443332  2235555555432 11100011222233444444556678


Q ss_pred             ceeeccCCCCchhHHHHHHHHHHHHH
Q 008516          167 VCTITSTPSKFVHCIVWAKDLLFAKL  192 (563)
Q Consensus       167 ~cti~~~p~~~~hci~~a~~~lf~~l  192 (563)
                      ...|...|.+..-++.++.+ +...+
T Consensus       146 lVEvv~~~~T~~~~~~~~~~-~~~~~  170 (180)
T PF02737_consen  146 LVEVVPGPKTSPETVDRVRA-LLRSL  170 (180)
T ss_dssp             EEEEEE-TTS-HHHHHHHHH-HHHHT
T ss_pred             eEEEeCCCCCCHHHHHHHHH-HHHHC
Confidence            88888889888889999998 45544

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=94.71  E-value=0.16  Score=45.70  Aligned_cols=98  Identities=29%  Similarity=0.322  Sum_probs=60.2

Q ss_pred             cEEEECC-cHHHHHHHHHHHH-hCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516           14 KVLMVGA-GGIGCELLKTLAL-SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (563)
Q Consensus        14 ~VlvvGa-GgiG~ellknLal-~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i   91 (563)
                      ||.|+|+ |-+|.++++.+.. .|+.-.-.+|...   |.      +-.+|+|.        .+......+.+.      
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~---~~------~~g~d~g~--------~~~~~~~~~~v~------   58 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKP---SA------KVGKDVGE--------LAGIGPLGVPVT------   58 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTT---ST------TTTSBCHH--------HCTSST-SSBEB------
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCC---cc------cccchhhh--------hhCcCCcccccc------
Confidence            7999999 9999999999998 6665555555333   00      11234431        111111122221      


Q ss_pred             CCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccc
Q 008516           92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGF  139 (563)
Q Consensus        92 ~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~  139 (563)
                         ..-.+.+..+|+||+.+ ++++-...-+.|.++++|+|-+ |+|+
T Consensus        59 ---~~l~~~~~~~DVvIDfT-~p~~~~~~~~~~~~~g~~~ViG-TTG~  101 (124)
T PF01113_consen   59 ---DDLEELLEEADVVIDFT-NPDAVYDNLEYALKHGVPLVIG-TTGF  101 (124)
T ss_dssp             ---S-HHHHTTH-SEEEEES--HHHHHHHHHHHHHHT-EEEEE--SSS
T ss_pred             ---hhHHHhcccCCEEEEcC-ChHHhHHHHHHHHhCCCCEEEE-CCCC
Confidence               11256677799999998 6787777888899999998865 4454

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=94.61  E-value=0.063  Score=44.19  Aligned_cols=54  Identities=26%  Similarity=0.377  Sum_probs=39.1

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC
Q 008516           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR   79 (563)
Q Consensus        14 ~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~n   79 (563)
                      ||+|||+|.+|+|++..|+..|. ++++++...-          +. ...+..=+..+.+.+++.+
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~~----------~~-~~~~~~~~~~~~~~l~~~g   54 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSDR----------LL-PGFDPDAAKILEEYLRKRG   54 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSSS----------SS-TTSSHHHHHHHHHHHHHTT
T ss_pred             CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccch----------hh-hhcCHHHHHHHHHHHHHCC
Confidence            68999999999999999999995 7898874332          11 2334444556667776663

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=94.55  E-value=0.43  Score=49.28  Aligned_cols=164  Identities=16%  Similarity=0.204  Sum_probs=79.7

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCce--EEEeccC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMS--ITAHHAN   90 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~--I~~~~~~   90 (563)
                      ++|.|||+|.+|+.++..|+..|. +++++|.+.=.   +.+         ++...+-..+.+.+...-..  .......
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~---~~~---------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   71 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDPAA---LSR---------GLDSISSSLARLVKKGKMSQEEADATLGR   71 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHH---HHH---------HHHHHHHHHHHHHHcCCCCHHHHHHHHhc
Confidence            579999999999999999999996 78888854311   110         00000001111111100000  0000000


Q ss_pred             CCCCcchHhhcccccEEEEccC-CHHHHHHHHHHHHh--cCCCEEEeccccce-eeEEEEeCCCCccccccCCCCCCCCC
Q 008516           91 VKDPKFNVEFFKQFNVVLNGLD-NLDARRHVNRLCLA--ADVPLVESGTTGFL-GQVTVHVKGKTECYECQPKPAPKTYP  166 (563)
Q Consensus        91 i~~~~~~~~~~~~~dvVi~alD-n~~ar~~in~~c~~--~~~pli~~gt~G~~-G~v~v~~~~~t~Cy~C~~~~~~~~~p  166 (563)
                      +.-. .+.+-++++|+||.|+- +.+....+-+....  ..-.+|-+.+.|.. ..+.-.......+...++-.++...+
T Consensus        72 ~~~~-~~~~~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~  150 (295)
T PLN02545         72 IRCT-TNLEELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMK  150 (295)
T ss_pred             eEee-CCHHHhCCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCc
Confidence            0000 01234689999999875 34444443332222  11234544444432 11111122223344444444555566


Q ss_pred             ceeeccCCCCchhHHHHHHHHHHHH
Q 008516          167 VCTITSTPSKFVHCIVWAKDLLFAK  191 (563)
Q Consensus       167 ~cti~~~p~~~~hci~~a~~~lf~~  191 (563)
                      ...+...+......+..+++ +|+.
T Consensus       151 lveiv~g~~t~~e~~~~~~~-ll~~  174 (295)
T PLN02545        151 LVEIIRGADTSDEVFDATKA-LAER  174 (295)
T ss_pred             eEEEeCCCCCCHHHHHHHHH-HHHH
Confidence            76776666666666777777 5664

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.54  E-value=0.32  Score=49.88  Aligned_cols=157  Identities=17%  Similarity=0.231  Sum_probs=81.3

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC---------ce
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ---------MS   83 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~---------v~   83 (563)
                      .+|.|||+|-+|+.++..|+..|. +++++|.+.=.   +.+         ++...+...+.+.+...-         .+
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~---~~~---------~~~~i~~~l~~~~~~g~~~~~~~~~~~~~   70 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAA---VDR---------GLATITKSLDRLVKKGKMTEADKEAALAR   70 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHH---HHH---------HHHHHHHHHHHHHHcCCCCHHHHHHHHhC
Confidence            479999999999999999999997 78888854321   111         111111111111111000         01


Q ss_pred             EEEeccCCCCCcchHhhcccccEEEEcc-CCHHHHH-HHHHHHHhc-CCCEEEeccccceee-EEEEeCCCCccccccCC
Q 008516           84 ITAHHANVKDPKFNVEFFKQFNVVLNGL-DNLDARR-HVNRLCLAA-DVPLVESGTTGFLGQ-VTVHVKGKTECYECQPK  159 (563)
Q Consensus        84 I~~~~~~i~~~~~~~~~~~~~dvVi~al-Dn~~ar~-~in~~c~~~-~~pli~~gt~G~~G~-v~v~~~~~t~Cy~C~~~  159 (563)
                      +...     . .  .+-.+++|+||.|+ .+..... .+.++.... .-.++.+.+.|..-. +.-..+....+...++-
T Consensus        71 l~~~-----~-~--~~~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~  142 (282)
T PRK05808         71 ITGT-----T-D--LDDLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFF  142 (282)
T ss_pred             eEEe-----C-C--HHHhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeecc
Confidence            2111     1 1  12368899999987 4555443 333332221 123555666554322 11112222334444444


Q ss_pred             CCCCCCCceeeccCCCCchhHHHHHHHHHHHH
Q 008516          160 PAPKTYPVCTITSTPSKFVHCIVWAKDLLFAK  191 (563)
Q Consensus       160 ~~~~~~p~cti~~~p~~~~hci~~a~~~lf~~  191 (563)
                      .+...-|..++...+......+..++. ++..
T Consensus       143 ~P~~~~~~vev~~g~~t~~e~~~~~~~-l~~~  173 (282)
T PRK05808        143 NPVPVMKLVEIIRGLATSDATHEAVEA-LAKK  173 (282)
T ss_pred             CCcccCccEEEeCCCCCCHHHHHHHHH-HHHH
Confidence            333334555666666666667777777 4553

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=94.52  E-value=0.17  Score=53.37  Aligned_cols=35  Identities=29%  Similarity=0.577  Sum_probs=31.6

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ++..||.|||+|.+|+.++-.++..|+..+.++|-
T Consensus         4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi   38 (321)
T PTZ00082          4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDI   38 (321)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeC
Confidence            45689999999999999999999999867999984

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=94.43  E-value=0.16  Score=53.13  Aligned_cols=71  Identities=17%  Similarity=0.281  Sum_probs=49.2

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCC-CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC-----CceEEEe
Q 008516           14 KVLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP-----QMSITAH   87 (563)
Q Consensus        14 ~VlvvGaGgiG~ellknLal~Gv-g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np-----~v~I~~~   87 (563)
                      ||.|||+|.+|+.++-.|+..|+ ++|.|+|-                   -+.|++.-+.-+.+..+     +++|.  
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di-------------------~~~~a~g~a~DL~~~~~~~~~~~~~i~--   59 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDV-------------------NEGVAEGEALDFHHATALTYSTNTKIR--   59 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CcchhhHHHHHHHhhhccCCCCCEEEE--
Confidence            68999999999999999999998 57999982                   23345444445554332     23333  


Q ss_pred             ccCCCCCcchHhhcccccEEEEccC
Q 008516           88 HANVKDPKFNVEFFKQFNVVLNGLD  112 (563)
Q Consensus        88 ~~~i~~~~~~~~~~~~~dvVi~alD  112 (563)
                      .+       +.+-++++|+||.+..
T Consensus        60 ~~-------~y~~~~~aDivvitaG   77 (307)
T cd05290          60 AG-------DYDDCADADIIVITAG   77 (307)
T ss_pred             EC-------CHHHhCCCCEEEECCC
Confidence            22       1355899999988654

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=94.23  E-value=0.24  Score=51.18  Aligned_cols=33  Identities=27%  Similarity=0.589  Sum_probs=29.8

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~   46 (563)
                      .+|.|+|+|.+|+.++..|+..|. +++++|.+.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~   36 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSE   36 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence            579999999999999999999998 699998654

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=94.17  E-value=0.08  Score=54.86  Aligned_cols=77  Identities=26%  Similarity=0.441  Sum_probs=46.5

Q ss_pred             EEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC--Cc--eEEEecc
Q 008516           15 VLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP--QM--SITAHHA   89 (563)
Q Consensus        15 VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np--~v--~I~~~~~   89 (563)
                      |||-| +|.||+|+++.|+..|..+|.++|.|--...++.+.                   +++..|  .+  .+.+...
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~-------------------l~~~~~~~~v~~~~~~vig   61 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERE-------------------LRSRFPDPKVRFEIVPVIG   61 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHH-------------------CHHHC--TTCEEEEE--CT
T ss_pred             CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHH-------------------HhhcccccCcccccCceee
Confidence            67886 788999999999999999999999776555444444                   333222  23  2344555


Q ss_pred             CCCCCcchHhhcc--cccEEEEc
Q 008516           90 NVKDPKFNVEFFK--QFNVVLNG  110 (563)
Q Consensus        90 ~i~~~~~~~~~~~--~~dvVi~a  110 (563)
                      ++.+...-...++  +.|+|+.|
T Consensus        62 Dvrd~~~l~~~~~~~~pdiVfHa   84 (293)
T PF02719_consen   62 DVRDKERLNRIFEEYKPDIVFHA   84 (293)
T ss_dssp             SCCHHHHHHHHTT--T-SEEEE-
T ss_pred             cccCHHHHHHHHhhcCCCEEEEC
Confidence            6644333334455  67777775

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>PLN00203 glutamyl-tRNA reductase

Probab=94.11  E-value=0.12  Score=57.83  Aligned_cols=78  Identities=21%  Similarity=0.342  Sum_probs=52.6

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      |.+.+|+|||+|.+|..++++|...|+.+|++++.+                   ..|++.+++.+    +++.+.....
T Consensus       264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs-------------------~era~~La~~~----~g~~i~~~~~  320 (519)
T PLN00203        264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRS-------------------EERVAALREEF----PDVEIIYKPL  320 (519)
T ss_pred             CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCC-------------------HHHHHHHHHHh----CCCceEeecH
Confidence            557999999999999999999999999999997522                   13444444433    2333322111


Q ss_pred             CCCCCcchHhhcccccEEEEccCCHH
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGLDNLD  115 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~alDn~~  115 (563)
                        .   ...+.+.++|+||.|+....
T Consensus       321 --~---dl~~al~~aDVVIsAT~s~~  341 (519)
T PLN00203        321 --D---EMLACAAEADVVFTSTSSET  341 (519)
T ss_pred             --h---hHHHHHhcCCEEEEccCCCC
Confidence              0   12356789999999975433

>PRK07063 short chain dehydrogenase; Provisional

Probab=94.11  E-value=0.23  Score=49.67  Aligned_cols=64  Identities=27%  Similarity=0.394  Sum_probs=43.9

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      ++.+++++|.| .||||.++++.|+..|. ++.++|.+                   ..+.+.+++.+...++..++..+
T Consensus         4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~   63 (260)
T PRK07063          4 RLAGKVALVTGAAQGIGAAIARAFAREGA-AVALADLD-------------------AALAERAAAAIARDVAGARVLAV   63 (260)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHhccCCceEEEE
Confidence            46788999998 58999999999999997 57776621                   23444455555544445556666


Q ss_pred             ccCCC
Q 008516           88 HANVK   92 (563)
Q Consensus        88 ~~~i~   92 (563)
                      ..+++
T Consensus        64 ~~Dl~   68 (260)
T PRK07063         64 PADVT   68 (260)
T ss_pred             EccCC
Confidence            55554

>PRK06197 short chain dehydrogenase; Provisional

Probab=94.01  E-value=0.22  Score=51.40  Aligned_cols=36  Identities=22%  Similarity=0.332  Sum_probs=29.9

Q ss_pred             HHHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         8 ~kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ..+.+++|+|.| .||||.++++.|+..|. ++.+++.
T Consensus        12 ~~~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r   48 (306)
T PRK06197         12 PDQSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVR   48 (306)
T ss_pred             ccCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence            356788899998 59999999999999997 5767653

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=93.90  E-value=0.22  Score=50.89  Aligned_cols=73  Identities=19%  Similarity=0.332  Sum_probs=48.3

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      .+++++|+|+||+|..++..|+..|. +++++|.+                   ..|++.+++.+... +.  +....  
T Consensus       116 ~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~-------------------~~~~~~la~~~~~~-~~--~~~~~--  170 (270)
T TIGR00507       116 PNQRVLIIGAGGAARAVALPLLKADC-NVIIANRT-------------------VSKAEELAERFQRY-GE--IQAFS--  170 (270)
T ss_pred             cCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHhhc-Cc--eEEec--
Confidence            46789999999999999999999996 88887632                   24566566655432 11  11111  


Q ss_pred             CCCCcchHhhcccccEEEEccCC
Q 008516           91 VKDPKFNVEFFKQFNVVLNGLDN  113 (563)
Q Consensus        91 i~~~~~~~~~~~~~dvVi~alDn  113 (563)
                      .     +.....++|+||+++-.
T Consensus       171 ~-----~~~~~~~~DivInatp~  188 (270)
T TIGR00507       171 M-----DELPLHRVDLIINATSA  188 (270)
T ss_pred             h-----hhhcccCccEEEECCCC
Confidence            1     11123578999998753

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=93.89  E-value=0.52  Score=47.76  Aligned_cols=79  Identities=19%  Similarity=0.265  Sum_probs=49.0

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCC--CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGF--QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gv--g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      .+|.|||+|.+|..++..|...|.  ..+.++|.+.                   .+++.+++.   +  ++.+      
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~-------------------~~~~~~~~~---~--g~~~------   52 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSP-------------------EKRAALAEE---Y--GVRA------   52 (267)
T ss_pred             CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCH-------------------HHHHHHHHh---c--CCee------
Confidence            579999999999999999999984  3566655221                   122222221   1  1221      


Q ss_pred             CCCCcchHhhcccccEEEEccCCHHHHHHHHHHH
Q 008516           91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLC  124 (563)
Q Consensus        91 i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c  124 (563)
                       ..  ...+...++|+|+.|+-....+..+.++.
T Consensus        53 -~~--~~~~~~~~advVil~v~~~~~~~v~~~l~   83 (267)
T PRK11880         53 -AT--DNQEAAQEADVVVLAVKPQVMEEVLSELK   83 (267)
T ss_pred             -cC--ChHHHHhcCCEEEEEcCHHHHHHHHHHHH
Confidence             11  12345678999999987665666555543

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=93.79  E-value=0.13  Score=48.43  Aligned_cols=116  Identities=17%  Similarity=0.288  Sum_probs=59.5

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC--
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN--   90 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~--   90 (563)
                      ++|.+||+|..|+.++++|+..|+ .+++.|.+.-....+..+        |-..+...++.+++-  ++-+......  
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~--------g~~~~~s~~e~~~~~--dvvi~~v~~~~~   70 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEA--------GAEVADSPAEAAEQA--DVVILCVPDDDA   70 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHT--------TEEEESSHHHHHHHB--SEEEE-SSSHHH
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHh--------hhhhhhhhhhHhhcc--cceEeecccchh
Confidence            479999999999999999999998 588877442111111100        111111122222222  2222222211  


Q ss_pred             CCCCcc---hHhhcccccEEEE-ccCCHHHHHHHHHHHHhcCCCEEEeccccc
Q 008516           91 VKDPKF---NVEFFKQFNVVLN-GLDNLDARRHVNRLCLAADVPLVESGTTGF  139 (563)
Q Consensus        91 i~~~~~---~~~~~~~~dvVi~-alDn~~ar~~in~~c~~~~~pli~~gt~G~  139 (563)
                      +.+-.+   -......=.++|+ ++-+++.-+.+.+.+...++.++++...|.
T Consensus        71 v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg  123 (163)
T PF03446_consen   71 VEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGG  123 (163)
T ss_dssp             HHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESH
T ss_pred             hhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecc
Confidence            000000   1122334456666 445566677778888888888888887764

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=93.78  E-value=0.54  Score=53.15  Aligned_cols=82  Identities=16%  Similarity=0.245  Sum_probs=50.5

Q ss_pred             HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhh-------CCC
Q 008516           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKF-------RPQ   81 (563)
Q Consensus        10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~-------np~   81 (563)
                      -.++.|+|.|+ |+||..+++.|+..|. ++++++.+.                   .|.+.+.+.+.++       .+.
T Consensus        78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~-------------------ekl~~l~~~l~~~~L~~~Ga~~~  137 (576)
T PLN03209         78 KDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSA-------------------QRAESLVQSVKQMKLDVEGTQPV  137 (576)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCH-------------------HHHHHHHHHhhhhcccccccccc
Confidence            35567889985 9999999999999996 566654321                   2233333332221       112


Q ss_pred             ceEEEeccCCCCCcchHhhcccccEEEEcc
Q 008516           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGL  111 (563)
Q Consensus        82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~al  111 (563)
                      .+++.+..++.+...-.+.+.+.|+||++.
T Consensus       138 ~~v~iV~gDLtD~esI~~aLggiDiVVn~A  167 (576)
T PLN03209        138 EKLEIVECDLEKPDQIGPALGNASVVICCI  167 (576)
T ss_pred             CceEEEEecCCCHHHHHHHhcCCCEEEEcc
Confidence            245666667754332345578899999875

>PRK05854 short chain dehydrogenase; Provisional

Probab=93.78  E-value=0.24  Score=51.52  Aligned_cols=63  Identities=19%  Similarity=0.394  Sum_probs=42.8

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      .|++++++|.| .||||.++++.|+..|. ++.+++.+                   ..|.+.+.+.+.+.+|+.++..+
T Consensus        11 ~l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~-------------------~~~~~~~~~~l~~~~~~~~v~~~   70 (313)
T PRK05854         11 DLSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRN-------------------RAKGEAAVAAIRTAVPDAKLSLR   70 (313)
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHHhCCCCceEEE
Confidence            46778899998 68999999999999996 67776532                   13444455555555555555555


Q ss_pred             ccCC
Q 008516           88 HANV   91 (563)
Q Consensus        88 ~~~i   91 (563)
                      ..++
T Consensus        71 ~~Dl   74 (313)
T PRK05854         71 ALDL   74 (313)
T ss_pred             EecC
Confidence            4444

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=93.76  E-value=0.67  Score=51.76  Aligned_cols=164  Identities=17%  Similarity=0.209  Sum_probs=82.7

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK   92 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~   92 (563)
                      ++|.|||+|.+|+.++.+|+..|+ .+++.|.+.=....+.+            ....+.+.+..+.. .... ...++.
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~-~V~v~D~~~~~~~~~~~------------~~~~~~~~~~~l~~-~~~~-~~g~i~   69 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGI-DVAVFDPHPEAERIIGE------------VLANAERAYAMLTD-APLP-PEGRLT   69 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHH------------HHHHHHHHHhhhcc-chhh-hhhceE
Confidence            479999999999999999999998 68898864322111100            00000111111100 0000 000110


Q ss_pred             CCcchHhhcccccEEEEccCC-HHHHHHH-HHHHHh-cCCCEEEecccccee-eEEEEeCCCCccccccCCCCCCCCCce
Q 008516           93 DPKFNVEFFKQFNVVLNGLDN-LDARRHV-NRLCLA-ADVPLVESGTTGFLG-QVTVHVKGKTECYECQPKPAPKTYPVC  168 (563)
Q Consensus        93 ~~~~~~~~~~~~dvVi~alDn-~~ar~~i-n~~c~~-~~~pli~~gt~G~~G-~v~v~~~~~t~Cy~C~~~~~~~~~p~c  168 (563)
                      -.....+.++++|+|+.++-. .+.+..+ .++... ..-.+|.+.|.|..- .+.-.......++..++-.++...|.-
T Consensus        70 ~~~~~~ea~~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lv  149 (495)
T PRK07531         70 FCASLAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLV  149 (495)
T ss_pred             eeCCHHHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCceE
Confidence            001123567899999998744 3334332 332211 222478888877431 111112233344444443334444555


Q ss_pred             eeccCCCCchhHHHHHHHHHHHHH
Q 008516          169 TITSTPSKFVHCIVWAKDLLFAKL  192 (563)
Q Consensus       169 ti~~~p~~~~hci~~a~~~lf~~l  192 (563)
                      .+...+......+..+++ +++.+
T Consensus       150 evv~g~~t~~e~~~~~~~-~~~~l  172 (495)
T PRK07531        150 ELVGGGKTSPETIRRAKE-ILREI  172 (495)
T ss_pred             EEcCCCCCCHHHHHHHHH-HHHHc
Confidence            565655555666888887 46543

>PRK09242 tropinone reductase; Provisional

Probab=93.70  E-value=0.27  Score=49.04  Aligned_cols=65  Identities=28%  Similarity=0.424  Sum_probs=46.8

Q ss_pred             HHcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516            9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus         9 kL~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      ++++++++|+|+ ||||.++++.|+..|. ++.+++.+                   ..+.+.+.+.+...+|+.++..+
T Consensus         6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~   65 (257)
T PRK09242          6 RLDGQTALITGASKGIGLAIAREFLGLGA-DVLIVARD-------------------ADALAQARDELAEEFPEREVHGL   65 (257)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC-------------------HHHHHHHHHHHHhhCCCCeEEEE
Confidence            367889999985 8999999999999997 57777632                   12344455566666677777777


Q ss_pred             ccCCCC
Q 008516           88 HANVKD   93 (563)
Q Consensus        88 ~~~i~~   93 (563)
                      ..++.+
T Consensus        66 ~~Dl~~   71 (257)
T PRK09242         66 AADVSD   71 (257)
T ss_pred             ECCCCC
Confidence            766643

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.63  E-value=0.14  Score=52.95  Aligned_cols=34  Identities=18%  Similarity=0.333  Sum_probs=31.0

Q ss_pred             HHcCCcEEEECCcH-HHHHHHHHHHHhCCCeEEEEe
Q 008516            9 AIKGAKVLMVGAGG-IGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus         9 kL~~~~VlvvGaGg-iG~ellknLal~Gvg~I~iiD   43 (563)
                      .+++++|+|+|+|+ +|..++..|...|. .+++.+
T Consensus       156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~  190 (283)
T PRK14192        156 ELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICH  190 (283)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEe
Confidence            36788999999999 99999999999998 899886

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.63  E-value=0.57  Score=48.34  Aligned_cols=33  Identities=33%  Similarity=0.563  Sum_probs=29.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      -++|.|||+|.+|..++.+|+..|. .++++|.+
T Consensus         4 ~~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~   36 (292)
T PRK07530          4 IKKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVS   36 (292)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            3689999999999999999999997 68888854

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.62  E-value=0.33  Score=50.57  Aligned_cols=33  Identities=18%  Similarity=0.354  Sum_probs=29.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .++|.|+|+|.+|+.+++.|+..|. .+++.|.+
T Consensus         4 ~m~I~iiG~G~~G~~lA~~l~~~G~-~V~~~~r~   36 (308)
T PRK14619          4 PKTIAILGAGAWGSTLAGLASANGH-RVRVWSRR   36 (308)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            4689999999999999999999996 68888865

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.62  E-value=0.39  Score=49.48  Aligned_cols=33  Identities=33%  Similarity=0.660  Sum_probs=29.3

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~   46 (563)
                      ++|.|||+|.+|..++.+|+..|. +++++|.+.
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~   34 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQ   34 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCH
Confidence            479999999999999999999997 688988654

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=93.56  E-value=0.58  Score=47.63  Aligned_cols=133  Identities=21%  Similarity=0.247  Sum_probs=76.4

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHh-CCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           13 AKVLMVGA-GGIGCELLKTLALS-GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        13 ~~VlvvGa-GgiG~ellknLal~-Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      .||.|+|+ |.+|..+++.+... ++.-..++|.+.-   ...+   +                     ....+.. .. 
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~---~~~~---~---------------------~~~~i~~-~~-   52 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGS---PLVG---Q---------------------GALGVAI-TD-   52 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCc---cccc---c---------------------CCCCccc-cC-
Confidence            48999999 99999999988764 5554555664421   1100   0                     0011111 01 


Q ss_pred             CCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCCCccccccCCCCCCCCCceee
Q 008516           91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTI  170 (563)
Q Consensus        91 i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~Cy~C~~~~~~~~~p~cti  170 (563)
                          . -.+.+..+|+|++++ +++.-..+-..|.++++|++-+ ++|+.-.         .+ +-... ..+..|+.-.
T Consensus        53 ----d-l~~ll~~~DvVid~t-~p~~~~~~~~~al~~G~~vvig-ttG~s~~---------~~-~~l~~-aa~~~~v~~s  114 (257)
T PRK00048         53 ----D-LEAVLADADVLIDFT-TPEATLENLEFALEHGKPLVIG-TTGFTEE---------QL-AELEE-AAKKIPVVIA  114 (257)
T ss_pred             ----C-HHHhccCCCEEEECC-CHHHHHHHHHHHHHcCCCEEEE-CCCCCHH---------HH-HHHHH-HhcCCCEEEE
Confidence                1 134456799999988 4555577788999999999944 6675421         11 00111 1244555555


Q ss_pred             ccCCCCchhHHHHHHHHHHHHHhC
Q 008516          171 TSTPSKFVHCIVWAKDLLFAKLFG  194 (563)
Q Consensus       171 ~~~p~~~~hci~~a~~~lf~~lf~  194 (563)
                      .|+-..+.--...++.  ....|+
T Consensus       115 ~n~s~g~~~~~~l~~~--aa~~l~  136 (257)
T PRK00048        115 PNFSIGVNLLMKLAEK--AAKYLG  136 (257)
T ss_pred             CcchHHHHHHHHHHHH--HHHhcC
Confidence            5655555555566665  235665

>PLN02240 UDP-glucose 4-epimerase

Probab=93.52  E-value=0.52  Score=49.34  Aligned_cols=33  Identities=33%  Similarity=0.691  Sum_probs=28.5

Q ss_pred             HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEe
Q 008516           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD   43 (563)
                      |++++|+|.|+ |.+|..+++.|+..|. +++++|
T Consensus         3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~   36 (352)
T PLN02240          3 LMGRTILVTGGAGYIGSHTVLQLLLAGY-KVVVID   36 (352)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEe
Confidence            56789999985 9999999999999985 677776

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=93.52  E-value=0.69  Score=48.37  Aligned_cols=78  Identities=17%  Similarity=0.264  Sum_probs=48.8

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhC-CCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSG-FQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~G-vg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      +++++|+|.| +|+||..+++.|+..| ..+++++|.+.-                   +...+.+.+    +.-+++.+
T Consensus         2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~-------------------~~~~~~~~~----~~~~~~~v   58 (324)
T TIGR03589         2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDEL-------------------KQWEMQQKF----PAPCLRFF   58 (324)
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChh-------------------HHHHHHHHh----CCCcEEEE
Confidence            3567899998 5899999999999987 457888774321                   111111111    11245556


Q ss_pred             ccCCCCCcchHhhcccccEEEEc
Q 008516           88 HANVKDPKFNVEFFKQFNVVLNG  110 (563)
Q Consensus        88 ~~~i~~~~~~~~~~~~~dvVi~a  110 (563)
                      ..++.+...-.+.++++|+||.+
T Consensus        59 ~~Dl~d~~~l~~~~~~iD~Vih~   81 (324)
T TIGR03589        59 IGDVRDKERLTRALRGVDYVVHA   81 (324)
T ss_pred             EccCCCHHHHHHHHhcCCEEEEC
Confidence            66665443334566778888884

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein

Probab=93.51  E-value=0.11  Score=43.60  Aligned_cols=58  Identities=22%  Similarity=0.249  Sum_probs=30.3

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHhcCccc--cceeeecccccccccccccCCCCCCCCcccCCC
Q 008516          374 VHAVATTNAIIAGLIVIEAIKVLLKDTDK--YRMTYCLEHITKKMLLMPVEPYEPNKSCYVCSE  435 (563)
Q Consensus       374 IPAIATTnAiVAGl~vlE~~K~l~~~~~~--~r~~f~~~~~~~~~~~~p~~~~~pn~~C~vC~~  435 (563)
                      +.-+.++.++|+++++.|++|+|.|..+.  .+-.+++.....   +.... ..++|+|.+|+.
T Consensus        23 ~GVlg~~~giigslqA~eaik~l~g~~~~l~~~l~~~D~~~~~---~~~i~-~~k~~~C~~C~~   82 (84)
T PF05237_consen   23 AGVLGPVVGIIGSLQANEAIKLLLGIGEPLSGKLLTIDLLNMS---FRSIR-IKKNPDCPVCGP   82 (84)
T ss_dssp             S-B-HHHHHHHHHHHHHHHHHHHCT-S---BTEEEEEETTTTE---EEEEE-----TT-TTT--
T ss_pred             cccccchHHHHHHHHHHHHHHHHHhcCCchhhheeeEECCCCe---EEEEe-cCCCccCcCcCc
Confidence            35678888999999999999999975322  233333322111   11111 236899999985

The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=93.49  E-value=0.29  Score=53.48  Aligned_cols=36  Identities=25%  Similarity=0.410  Sum_probs=32.3

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~   46 (563)
                      +.+++|+|+|+|.+|..+++.|...|. +++++|.|.
T Consensus       210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp  245 (425)
T PRK05476        210 IAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDP  245 (425)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCc
Confidence            578899999999999999999999999 798888554

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=93.44  E-value=0.49  Score=51.65  Aligned_cols=91  Identities=19%  Similarity=0.317  Sum_probs=57.9

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK   92 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~   92 (563)
                      ++|+|+|+|.+|..+++.|...|. .++++|.+.                   .+.+.++    +   ...+..+.++.+
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~-~v~vid~~~-------------------~~~~~~~----~---~~~~~~~~gd~~   53 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENN-DVTVIDTDE-------------------ERLRRLQ----D---RLDVRTVVGNGS   53 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-cEEEEECCH-------------------HHHHHHH----h---hcCEEEEEeCCC
Confidence            379999999999999999999987 577887432                   1122211    1   112344444443


Q ss_pred             CCcchHh-hcccccEEEEccCCHHHHHHHHHHHHhc-CCC
Q 008516           93 DPKFNVE-FFKQFNVVLNGLDNLDARRHVNRLCLAA-DVP  130 (563)
Q Consensus        93 ~~~~~~~-~~~~~dvVi~alDn~~ar~~in~~c~~~-~~p  130 (563)
                      +...-.+ -++++|.|+.++++...-..+-..++.. +.+
T Consensus        54 ~~~~l~~~~~~~a~~vi~~~~~~~~n~~~~~~~r~~~~~~   93 (453)
T PRK09496         54 SPDVLREAGAEDADLLIAVTDSDETNMVACQIAKSLFGAP   93 (453)
T ss_pred             CHHHHHHcCCCcCCEEEEecCChHHHHHHHHHHHHhcCCC
Confidence            3221122 2678999999998877666666667664 444

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=93.38  E-value=0.51  Score=44.44  Aligned_cols=94  Identities=26%  Similarity=0.359  Sum_probs=59.6

Q ss_pred             EEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCCC
Q 008516           15 VLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD   93 (563)
Q Consensus        15 VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~~   93 (563)
                      |+|+|+ |.+|..+++.|...| .+++.+=               |.    ..|.+.        .+  +++....++.+
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~---------------R~----~~~~~~--------~~--~~~~~~~d~~d   50 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRG-HEVTALV---------------RS----PSKAED--------SP--GVEIIQGDLFD   50 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTT-SEEEEEE---------------SS----GGGHHH--------CT--TEEEEESCTTC
T ss_pred             eEEECCCChHHHHHHHHHHHCC-CEEEEEe---------------cC----chhccc--------cc--ccccceeeehh
Confidence            789997 999999999999999 4666631               21    112222        34  45556666654


Q ss_pred             CcchHhhcccccEEEEccCC----HHHHHHHHHHHHhcCCCE-EEecccc
Q 008516           94 PKFNVEFFKQFNVVLNGLDN----LDARRHVNRLCLAADVPL-VESGTTG  138 (563)
Q Consensus        94 ~~~~~~~~~~~dvVi~alDn----~~ar~~in~~c~~~~~pl-i~~gt~G  138 (563)
                      ...-.+.++++|.|+.+...    ...-..+-+.|...+++- +..++.|
T Consensus        51 ~~~~~~al~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~s~~~  100 (183)
T PF13460_consen   51 PDSVKAALKGADAVIHAAGPPPKDVDAAKNIIEAAKKAGVKRVVYLSSAG  100 (183)
T ss_dssp             HHHHHHHHTTSSEEEECCHSTTTHHHHHHHHHHHHHHTTSSEEEEEEETT
T ss_pred             hhhhhhhhhhcchhhhhhhhhcccccccccccccccccccccceeeeccc
Confidence            43335567899999998752    333445666677777653 3334344

...

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=93.24  E-value=0.24  Score=46.43  Aligned_cols=97  Identities=15%  Similarity=0.279  Sum_probs=55.9

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHH--hhCCCceEEEeccCC
Q 008516           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVL--KFRPQMSITAHHANV   91 (563)
Q Consensus        14 ~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~--~~np~v~I~~~~~~i   91 (563)
                      ||.|+|+|..|+.++..|+..| .++++...|.=                   ..+.+.+.=.  ..-|+.++.. .-.+
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~~-------------------~~~~i~~~~~n~~~~~~~~l~~-~i~~   59 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNG-HEVTLWGRDEE-------------------QIEEINETRQNPKYLPGIKLPE-NIKA   59 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCT-EEEEEETSCHH-------------------HHHHHHHHTSETTTSTTSBEET-TEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHcC-CEEEEEeccHH-------------------HHHHHHHhCCCCCCCCCcccCc-cccc
Confidence            6899999999999999999999 57887765541                   1111111100  1113322221 1111


Q ss_pred             CCCcchHhhcccccEEEEccCCHHHHHHHHHHHH--hcCCCEEE
Q 008516           92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL--AADVPLVE  133 (563)
Q Consensus        92 ~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~--~~~~pli~  133 (563)
                      +.  ...+.+++.|+|+.++-....|..+.++..  ..+.+++.
T Consensus        60 t~--dl~~a~~~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~  101 (157)
T PF01210_consen   60 TT--DLEEALEDADIIIIAVPSQAHREVLEQLAPYLKKGQIIIS  101 (157)
T ss_dssp             ES--SHHHHHTT-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEE
T ss_pred             cc--CHHHHhCcccEEEecccHHHHHHHHHHHhhccCCCCEEEE
Confidence            21  124678999999999998887877777643  34455554

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=93.23  E-value=0.82  Score=48.03  Aligned_cols=103  Identities=21%  Similarity=0.249  Sum_probs=58.5

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516           13 AKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (563)
Q Consensus        13 ~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i   91 (563)
                      ++|+|.|+ |-+|+.+++.|...|=-+++.+|...-.   +                       .+..+.-.++.+..++
T Consensus         2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~---~-----------------------~~~~~~~~~~~~~~Dl   55 (347)
T PRK11908          2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDR---L-----------------------GDLVNHPRMHFFEGDI   55 (347)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHH---H-----------------------HHhccCCCeEEEeCCC
Confidence            47999996 9999999999987631367777643210   0                       0111112344445555


Q ss_pred             C-CCcchHhhcccccEEEEcc--C---------------CHHHHHHHHHHHHhcCCCEEEecccccee
Q 008516           92 K-DPKFNVEFFKQFNVVLNGL--D---------------NLDARRHVNRLCLAADVPLVESGTTGFLG  141 (563)
Q Consensus        92 ~-~~~~~~~~~~~~dvVi~al--D---------------n~~ar~~in~~c~~~~~pli~~gt~G~~G  141 (563)
                      . +...-.+.++++|+||.+.  .               |...-..+-+.|++.+..+|..++.+.+|
T Consensus        56 ~~~~~~~~~~~~~~d~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~~~~v~~SS~~vyg  123 (347)
T PRK11908         56 TINKEWIEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTSEVYG  123 (347)
T ss_pred             CCCHHHHHHHHcCCCEEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcCCeEEEEecceeec
Confidence            3 2111123455677777531  1               11222344556777778899888766554

>PLN02427 UDP-apiose/xylose synthase

Probab=93.21  E-value=0.43  Score=51.03  Aligned_cols=114  Identities=19%  Similarity=0.271  Sum_probs=64.2

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      +++.+||+|.| +|-||+.+++.|+..|--++..+|...-   .+ ++ +..   .|.          ....+  +++.+
T Consensus        11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~---~~-~~-l~~---~~~----------~~~~~--~~~~~   70 (386)
T PLN02427         11 PIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYND---KI-KH-LLE---PDT----------VPWSG--RIQFH   70 (386)
T ss_pred             cccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCch---hh-hh-hhc---ccc----------ccCCC--CeEEE
Confidence            56678999999 5999999999999885236777774311   00 00 000   000          00111  35555


Q ss_pred             ccCCCCCcchHhhcccccEEEEccC---------C--------HHHHHHHHHHHHhcCCCEEEeccccceee
Q 008516           88 HANVKDPKFNVEFFKQFNVVLNGLD---------N--------LDARRHVNRLCLAADVPLVESGTTGFLGQ  142 (563)
Q Consensus        88 ~~~i~~~~~~~~~~~~~dvVi~alD---------n--------~~ar~~in~~c~~~~~pli~~gt~G~~G~  142 (563)
                      ..++.+...-.+.++++|+||.+..         +        ...-..+-+.|++.++.+|..++.+.+|.
T Consensus        71 ~~Dl~d~~~l~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~~r~v~~SS~~vYg~  142 (386)
T PLN02427         71 RINIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGK  142 (386)
T ss_pred             EcCCCChHHHHHHhhcCCEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeeeCC
Confidence            5566443222345667888887431         0        00111223456667788998888776664

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=93.18  E-value=0.58  Score=50.96  Aligned_cols=36  Identities=22%  Similarity=0.417  Sum_probs=31.6

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~   46 (563)
                      +.+.+|+|+|+|.+|..+++.+...|. +++++|.|.
T Consensus       200 l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~  235 (413)
T cd00401         200 IAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDP  235 (413)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCh
Confidence            467899999999999999999999999 688887543

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK08251 short chain dehydrogenase; Provisional

Probab=93.15  E-value=0.51  Score=46.63  Aligned_cols=62  Identities=21%  Similarity=0.426  Sum_probs=43.9

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        12 ~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      +++++|.| .||||.++++.|+..|. ++.+++.+.                   .+.+.+.+.+.+.+|..+++.+..+
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~D   61 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRT-------------------DRLEELKAELLARYPGIKVAVAALD   61 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCH-------------------HHHHHHHHHHHhhCCCceEEEEEcC
Confidence            56788987 89999999999999995 677776431                   2333444555566677777777766


Q ss_pred             CCC
Q 008516           91 VKD   93 (563)
Q Consensus        91 i~~   93 (563)
                      +++
T Consensus        62 ~~~   64 (248)
T PRK08251         62 VND   64 (248)
T ss_pred             CCC
Confidence            643

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=93.11  E-value=0.38  Score=52.52  Aligned_cols=108  Identities=22%  Similarity=0.275  Sum_probs=74.9

Q ss_pred             CcEEEECCcHHHH-HHHHHHHH----hCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516           13 AKVLMVGAGGIGC-ELLKTLAL----SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus        13 ~~VlvvGaGgiG~-ellknLal----~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      .||.|||+|+.-+ ++.+.|+.    .++++|.++|-|.  ...|+.-            ...+++.+.+..+.++|+..
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~--~~rl~~v------------~~~~~~~~~~~~~~~~v~~t   66 (419)
T cd05296           1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDE--EEKLEIV------------GALAKRMVKKAGLPIKVHLT   66 (419)
T ss_pred             CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCCh--HHHHHHH------------HHHHHHHHHhhCCCeEEEEe
Confidence            4799999999855 77888776    4678999999764  3333221            23456666777778888776


Q ss_pred             ccCCCCCcchHhhcccccEEEEcc--CCHHHHHHHHHHHHhcCCCEEEeccccceeeE
Q 008516           88 HANVKDPKFNVEFFKQFNVVLNGL--DNLDARRHVNRLCLAADVPLVESGTTGFLGQV  143 (563)
Q Consensus        88 ~~~i~~~~~~~~~~~~~dvVi~al--Dn~~ar~~in~~c~~~~~pli~~gt~G~~G~v  143 (563)
                      .+.       .+-++++|+||++.  ...++|..-.+...++|+-  -..|.|..|-.
T Consensus        67 ~d~-------~~al~gadfVi~~~~vg~~~~r~~de~i~~~~Gi~--gqET~G~GG~~  115 (419)
T cd05296          67 TDR-------REALEGADFVFTQIRVGGLEARALDERIPLKHGVI--GQETTGAGGFA  115 (419)
T ss_pred             CCH-------HHHhCCCCEEEEEEeeCCcchhhhhhhhHHHcCCc--cccCCCcchHH
Confidence            542       46688999999963  4456777777778888763  35677766643

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.08  E-value=0.28  Score=48.33  Aligned_cols=35  Identities=26%  Similarity=0.552  Sum_probs=29.9

Q ss_pred             HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +++++++|.|+ |++|.++++.|+..|.. +++++.+
T Consensus         3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~-V~~~~r~   38 (251)
T PRK07231          3 LEGKVAIVTGASSGIGEGIARRFAAEGAR-VVVTDRN   38 (251)
T ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCC
Confidence            56789999995 89999999999999975 8887644

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=93.06  E-value=0.36  Score=50.65  Aligned_cols=74  Identities=19%  Similarity=0.220  Sum_probs=50.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCC-eEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC---ceEEEe
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQ-DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ---MSITAH   87 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg-~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~---v~I~~~   87 (563)
                      ..||.|||+|.+|+.++-.|+..|.. +|.|+|..                   +.|++..+.-+....|.   .+|...
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~-------------------~~~~~g~a~Dl~~~~~~~~~~~v~~~   63 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVV-------------------EDKLKGEAMDLQHGSAFLKNPKIEAD   63 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------ccHHHHHHHHHHHhhccCCCCEEEEC
Confidence            46899999999999999999999985 69999832                   23444444555544432   233321


Q ss_pred             ccCCCCCcchHhhcccccEEEEccC
Q 008516           88 HANVKDPKFNVEFFKQFNVVLNGLD  112 (563)
Q Consensus        88 ~~~i~~~~~~~~~~~~~dvVi~alD  112 (563)
                       .       +.+-++++|+||.+..
T Consensus        64 -~-------dy~~~~~adivvitaG   80 (312)
T cd05293          64 -K-------DYSVTANSKVVIVTAG   80 (312)
T ss_pred             -C-------CHHHhCCCCEEEECCC
Confidence             1       1234799999988644

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02602 lactate dehydrogenase

Probab=93.04  E-value=0.32  Score=51.86  Aligned_cols=73  Identities=15%  Similarity=0.260  Sum_probs=49.7

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCC-CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC---CceEEEec
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP---QMSITAHH   88 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gv-g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np---~v~I~~~~   88 (563)
                      .||.|||+|.+|+.++-.|+..|+ ++|.|+|-                   .+.|++..+.-+....|   .++|... 
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi-------------------~~~~~~g~a~DL~~~~~~~~~~~i~~~-   97 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDV-------------------NPDKLRGEMLDLQHAAAFLPRTKILAS-   97 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeC-------------------CCchhhHHHHHHHhhhhcCCCCEEEeC-
Confidence            699999999999999999999998 57999983                   22344444444444332   2344321 


Q ss_pred             cCCCCCcchHhhcccccEEEEccC
Q 008516           89 ANVKDPKFNVEFFKQFNVVLNGLD  112 (563)
Q Consensus        89 ~~i~~~~~~~~~~~~~dvVi~alD  112 (563)
                      .       +.+.++++|+||.+..
T Consensus        98 ~-------dy~~~~daDiVVitAG  114 (350)
T PLN02602         98 T-------DYAVTAGSDLCIVTAG  114 (350)
T ss_pred             C-------CHHHhCCCCEEEECCC
Confidence            1       1344899999998754

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=92.97  E-value=0.2  Score=42.41  Aligned_cols=89  Identities=21%  Similarity=0.266  Sum_probs=54.4

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCC--CeEEEE-eCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           14 KVLMVGAGGIGCELLKTLALSGF--QDIHII-DMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        14 ~VlvvGaGgiG~ellknLal~Gv--g~I~ii-D~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      ||.++|+|.+|..+++.|+..|+  .++.++ +.                   ...|+..+++    ..+ +.+..    
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r-------------------~~~~~~~~~~----~~~-~~~~~----   52 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSR-------------------SPEKAAELAK----EYG-VQATA----   52 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES-------------------SHHHHHHHHH----HCT-TEEES----
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccC-------------------cHHHHHHHHH----hhc-ccccc----
Confidence            68899999999999999999995  345543 31                   1123222222    222 22211    


Q ss_pred             CCCCcchHhhcccccEEEEccCCHHHHHHHHHH-HHhcCCCEEEe
Q 008516           91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL-CLAADVPLVES  134 (563)
Q Consensus        91 i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~-c~~~~~pli~~  134 (563)
                          ....+..+..|+|+.|+........+.++ ....++-+|+.
T Consensus        53 ----~~~~~~~~~advvilav~p~~~~~v~~~i~~~~~~~~vis~   93 (96)
T PF03807_consen   53 ----DDNEEAAQEADVVILAVKPQQLPEVLSEIPHLLKGKLVISI   93 (96)
T ss_dssp             ----EEHHHHHHHTSEEEE-S-GGGHHHHHHHHHHHHTTSEEEEE
T ss_pred             ----CChHHhhccCCEEEEEECHHHHHHHHHHHhhccCCCEEEEe
Confidence                01356788999999999877777766666 34455555554

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=92.97  E-value=0.5  Score=49.73  Aligned_cols=81  Identities=19%  Similarity=0.204  Sum_probs=54.7

Q ss_pred             HHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEE
Q 008516            6 QLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSIT   85 (563)
Q Consensus         6 ~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~   85 (563)
                      ..+.|++++|.|||.|.+|..+++||..+|+ ++++.|..                  +  ++...++   .  .+..+.
T Consensus        10 ~~~~LkgKtVGIIG~GsIG~amA~nL~d~G~-~ViV~~r~------------------~--~s~~~A~---~--~G~~v~   63 (335)
T PRK13403         10 NVELLQGKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGVRP------------------G--KSFEVAK---A--DGFEVM   63 (335)
T ss_pred             ChhhhCcCEEEEEeEcHHHHHHHHHHHHCcC-EEEEEECc------------------c--hhhHHHH---H--cCCEEC
Confidence            4678999999999999999999999999998 56665411                  1  1111011   1  122211


Q ss_pred             EeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHH
Q 008516           86 AHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNR  122 (563)
Q Consensus        86 ~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~  122 (563)
                          .      -.+.+++.|+|+..+-+...+..++.
T Consensus        64 ----s------l~Eaak~ADVV~llLPd~~t~~V~~~   90 (335)
T PRK13403         64 ----S------VSEAVRTAQVVQMLLPDEQQAHVYKA   90 (335)
T ss_pred             ----C------HHHHHhcCCEEEEeCCChHHHHHHHH
Confidence                1      25778999999998877666665554

>PRK08618 ornithine cyclodeaminase; Validated

Probab=92.91  E-value=0.5  Score=49.74  Aligned_cols=77  Identities=10%  Similarity=0.170  Sum_probs=54.2

Q ss_pred             cCCcEEEECCcHHHHHHHHHHH-HhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           11 KGAKVLMVGAGGIGCELLKTLA-LSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLa-l~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      ...+++|+|+|+.|-..+..+. ..|+.++.++|.+                   ..|++..++.++... .+++..+..
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~-------------------~~~a~~~~~~~~~~~-~~~~~~~~~  185 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRT-------------------FEKAYAFAQEIQSKF-NTEIYVVNS  185 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCC-------------------HHHHHHHHHHHHHhc-CCcEEEeCC
Confidence            4678999999999999988875 5689999998633                   346777777665432 233333211


Q ss_pred             CCCCCcchHhhcccccEEEEccCCH
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGLDNL  114 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~alDn~  114 (563)
                             ..+.+++.|+|++|+.+.
T Consensus       186 -------~~~~~~~aDiVi~aT~s~  203 (325)
T PRK08618        186 -------ADEAIEEADIIVTVTNAK  203 (325)
T ss_pred             -------HHHHHhcCCEEEEccCCC
Confidence                   145668999999999765

>PRK14982 acyl-ACP reductase; Provisional

Probab=92.86  E-value=0.45  Score=50.50  Aligned_cols=36  Identities=28%  Similarity=0.511  Sum_probs=31.4

Q ss_pred             HHcCCcEEEECC-cHHHHHHHHHHHH-hCCCeEEEEeC
Q 008516            9 AIKGAKVLMVGA-GGIGCELLKTLAL-SGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvGa-GgiG~ellknLal-~Gvg~I~iiD~   44 (563)
                      .|++++|+|+|+ |.+|+++++.|+. .|+.++++++.
T Consensus       152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R  189 (340)
T PRK14982        152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVAR  189 (340)
T ss_pred             CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcC
Confidence            467899999998 8999999999985 58899998764

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=92.85  E-value=0.13  Score=51.99  Aligned_cols=57  Identities=21%  Similarity=0.201  Sum_probs=37.5

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHhcCccc--cceeeecccccccccccccCCCCCCCCcccC
Q 008516          373 IVHAVATTNAIIAGLIVIEAIKVLLKDTDK--YRMTYCLEHITKKMLLMPVEPYEPNKSCYVC  433 (563)
Q Consensus       373 IIPAIATTnAiVAGl~vlE~~K~l~~~~~~--~r~~f~~~~~~~~~~~~p~~~~~pn~~C~vC  433 (563)
                      ..+.++.++++||++++.|++|+|.|..+.  .|-..++......    ....-+++|+|++|
T Consensus       182 ~~gv~~p~~~~~~~~~a~e~ik~l~g~~~~l~g~ll~~d~~~~~~----~~~~~~~~~~C~~C  240 (240)
T TIGR02355       182 EAGVMAPVVGVVGSLQAMEAIKVLAGIGKPLSGKILMIDAMTMSF----REMKLPKNPTCPVC  240 (240)
T ss_pred             ccCccchHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCEE----EEEeccCCccCCCC
Confidence            456788899999999999999999975433  2333343321111    11223568999998

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=92.80  E-value=0.45  Score=46.83  Aligned_cols=35  Identities=31%  Similarity=0.577  Sum_probs=29.8

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +++++|+|.| .|++|..+++.|+..|. ++.+++.+
T Consensus         4 ~~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~   39 (251)
T PRK12826          4 LEGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDIC   39 (251)
T ss_pred             CCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5678899998 69999999999999997 67777654

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=92.77  E-value=0.19  Score=42.13  Aligned_cols=35  Identities=34%  Similarity=0.545  Sum_probs=32.8

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +..++++|+|+|+.|..++..|...|..++++.|.
T Consensus        21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            67899999999999999999999998889999987

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=92.74  E-value=1.1  Score=46.60  Aligned_cols=33  Identities=30%  Similarity=0.506  Sum_probs=29.5

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~   46 (563)
                      .+|.|||+|.+|+.++.+|+..|. +++++|.+.
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~   35 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGH-EVRLWDADP   35 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCC-eeEEEeCCH
Confidence            379999999999999999999997 699998664

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=92.72  E-value=0.49  Score=47.08  Aligned_cols=35  Identities=29%  Similarity=0.529  Sum_probs=29.7

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .+.+++|+|.| .|++|.++++.|+..|. ++.++|.
T Consensus         7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r   42 (255)
T PRK07523          7 DLTGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGR   42 (255)
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeC
Confidence            36788999998 59999999999999997 5777664

>PRK07831 short chain dehydrogenase; Provisional

Probab=92.70  E-value=0.48  Score=47.43  Aligned_cols=34  Identities=32%  Similarity=0.494  Sum_probs=28.5

Q ss_pred             HHcCCcEEEECC-c-HHHHHHHHHHHHhCCCeEEEEe
Q 008516            9 AIKGAKVLMVGA-G-GIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus         9 kL~~~~VlvvGa-G-giG~ellknLal~Gvg~I~iiD   43 (563)
                      .+.+++++|.|+ | |||..+++.|+..|.. +.++|
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~-V~~~~   49 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGAR-VVISD   49 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCCE-EEEEe
Confidence            456789999997 6 8999999999999974 77765

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=92.70  E-value=0.8  Score=47.20  Aligned_cols=106  Identities=18%  Similarity=0.275  Sum_probs=67.6

Q ss_pred             HHHcCCcEEEECCcHHHHHHHHHHHHh----CC------CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHh
Q 008516            8 EAIKGAKVLMVGAGGIGCELLKTLALS----GF------QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLK   77 (563)
Q Consensus         8 ~kL~~~~VlvvGaGgiG~ellknLal~----Gv------g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~   77 (563)
                      .+|.+.||+++|+|+-|.-+++.|...    |+      ++|.++|.+-+=..+  |      .|.-..|..-++    .
T Consensus        21 ~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~--r------~~l~~~~~~~a~----~   88 (279)
T cd05312          21 KPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKD--R------KDLTPFKKPFAR----K   88 (279)
T ss_pred             CChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCC--C------CcchHHHHHHHh----h
Confidence            468899999999999999999999988    99      699999977542211  1      123333333222    2


Q ss_pred             hCCCceEEEeccCCCCCcchHhhcc--cccEEEEccC--CHHHHHHHHHHHHhcCCCEEEecc
Q 008516           78 FRPQMSITAHHANVKDPKFNVEFFK--QFNVVLNGLD--NLDARRHVNRLCLAADVPLVESGT  136 (563)
Q Consensus        78 ~np~v~I~~~~~~i~~~~~~~~~~~--~~dvVi~alD--n~~ar~~in~~c~~~~~pli~~gt  136 (563)
                      .++        ...   ..-.+.++  +.|++|.+..  ..=.+..|-.|+.....|+|..-+
T Consensus        89 ~~~--------~~~---~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLS  140 (279)
T cd05312          89 DEE--------KEG---KSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALS  140 (279)
T ss_pred             cCc--------ccC---CCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECC
Confidence            222        000   11245566  6788777542  333466777777777788887654

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.67  E-value=0.46  Score=52.56  Aligned_cols=35  Identities=23%  Similarity=0.371  Sum_probs=31.0

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +...+|+|+|+|++|.+++..|...|. +++++|..
T Consensus        14 ~~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~   48 (480)
T PRK01438         14 WQGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDG   48 (480)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            457799999999999999999999997 59998854

>PRK05875 short chain dehydrogenase; Provisional

Probab=92.64  E-value=0.54  Score=47.37  Aligned_cols=35  Identities=23%  Similarity=0.413  Sum_probs=29.8

Q ss_pred             HHcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .+++++++|.|+ |+||.++++.|+..|. ++.+++.
T Consensus         4 ~~~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r   39 (276)
T PRK05875          4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGR   39 (276)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeC
Confidence            367889999996 8999999999999998 6777653

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=92.54  E-value=0.83  Score=48.09  Aligned_cols=35  Identities=31%  Similarity=0.292  Sum_probs=29.2

Q ss_pred             HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +++++|+|.|+ |.||+.+++.|+..|. +++++|.+
T Consensus         2 ~~~k~ilItGatG~IG~~l~~~L~~~G~-~V~~~~r~   37 (349)
T TIGR02622         2 WQGKKVLVTGHTGFKGSWLSLWLLELGA-EVYGYSLD   37 (349)
T ss_pred             cCCCEEEEECCCChhHHHHHHHHHHCCC-EEEEEeCC
Confidence            45789999995 8899999999999995 57777654

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=92.47  E-value=0.69  Score=50.82  Aligned_cols=107  Identities=18%  Similarity=0.259  Sum_probs=75.0

Q ss_pred             CcEEEECCcHH-HHHHHHHHHHh----CCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516           13 AKVLMVGAGGI-GCELLKTLALS----GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus        13 ~~VlvvGaGgi-G~ellknLal~----Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      .||.|||+|+. +-++++.|+..    ++++|+++|-|.   ..|.+            =...+++.+++..+.++|++.
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~---~rl~~------------v~~l~~~~~~~~g~~~~v~~T   65 (437)
T cd05298           1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDA---ERQEK------------VAEAVKILFKENYPEIKFVYT   65 (437)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCH---HHHHH------------HHHHHHHHHHhhCCCeEEEEE
Confidence            48999999987 34677777644    467999999554   22222            123455556667778888876


Q ss_pred             ccCCCCCcchHhhcccccEEEEc--cCCHHHHHHHHHHHHhcCCCEEEeccccceeeE
Q 008516           88 HANVKDPKFNVEFFKQFNVVLNG--LDNLDARRHVNRLCLAADVPLVESGTTGFLGQV  143 (563)
Q Consensus        88 ~~~i~~~~~~~~~~~~~dvVi~a--lDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v  143 (563)
                      .+.       .+-++++|+||++  ....++|..--+...++|+  +-..|.|..|-.
T Consensus        66 tdr-------~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGi--~gqET~G~GG~~  114 (437)
T cd05298          66 TDP-------EEAFTDADFVFAQIRVGGYAMREQDEKIPLKHGV--VGQETCGPGGFA  114 (437)
T ss_pred             CCH-------HHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcCc--ceecCccHHHHH
Confidence            543       4668999999996  4666888888888999996  544676776643

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>PRK07062 short chain dehydrogenase; Provisional

Probab=92.44  E-value=0.52  Score=47.22  Aligned_cols=64  Identities=22%  Similarity=0.335  Sum_probs=44.7

Q ss_pred             HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      ++++.++|.|+ ||||.++++.|+..|. ++.+++.+.                   .+.+.+.+.+.+..|..++..+.
T Consensus         6 l~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~   65 (265)
T PRK07062          6 LEGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDE-------------------ERLASAEARLREKFPGARLLAAR   65 (265)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCH-------------------HHHHHHHHHHHhhCCCceEEEEE
Confidence            66788999985 7999999999999998 477766431                   23444455555556666666666


Q ss_pred             cCCCC
Q 008516           89 ANVKD   93 (563)
Q Consensus        89 ~~i~~   93 (563)
                      .++++
T Consensus        66 ~D~~~   70 (265)
T PRK07062         66 CDVLD   70 (265)
T ss_pred             ecCCC
Confidence            56543

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=92.40  E-value=0.96  Score=47.46  Aligned_cols=90  Identities=19%  Similarity=0.266  Sum_probs=57.3

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      .+..++|.|||.|.||.++++.|...|+ ++..+|...        +     ..                 +.+.  ...
T Consensus       133 ~l~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~~~--------~-----~~-----------------~~~~--~~~  179 (312)
T PRK15469        133 HREDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSRSR--------K-----SW-----------------PGVQ--SFA  179 (312)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCC--------C-----CC-----------------CCce--eec
Confidence            4778999999999999999999998887 566766321        0     00                 0000  000


Q ss_pred             cCCCCCcchHhhcccccEEEEcc-CCHHHHHHHHHHHHh---cCCCEEEec
Q 008516           89 ANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLA---ADVPLVESG  135 (563)
Q Consensus        89 ~~i~~~~~~~~~~~~~dvVi~al-Dn~~ar~~in~~c~~---~~~pli~~g  135 (563)
                      . .   ..-.+++++.|+|+.++ .+.+.+..+|+--..   .+.-+|+.|
T Consensus       180 ~-~---~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~a  226 (312)
T PRK15469        180 G-R---EELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLA  226 (312)
T ss_pred             c-c---ccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECC
Confidence            0 0   11257789999999976 456677777754332   334456655

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=92.38  E-value=0.33  Score=49.97  Aligned_cols=33  Identities=27%  Similarity=0.417  Sum_probs=30.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +++++|+|+||.|..++-.|...|+++|+|++.
T Consensus       122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR  154 (272)
T PRK12550        122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVAR  154 (272)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence            358999999999999999999999999999863

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=92.31  E-value=0.63  Score=47.84  Aligned_cols=32  Identities=25%  Similarity=0.468  Sum_probs=27.2

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        13 ~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ++|+|.| +|.+|..+++.|+..|. +++.+|..
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~-~V~~~~r~   33 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGE-EVRVLVRP   33 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCC-EEEEEEec
Confidence            3689998 59999999999999995 68888754

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=92.14  E-value=0.77  Score=48.43  Aligned_cols=36  Identities=28%  Similarity=0.318  Sum_probs=30.0

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +++.++|+|.| +|=||+.+++.|...|. +++.+|..
T Consensus        12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~-~V~~~d~~   48 (348)
T PRK15181         12 VLAPKRWLITGVAGFIGSGLLEELLFLNQ-TVIGLDNF   48 (348)
T ss_pred             cccCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            35569999999 49999999999999985 67788754

>PRK06141 ornithine cyclodeaminase; Validated

Probab=92.13  E-value=0.57  Score=49.12  Aligned_cols=77  Identities=12%  Similarity=0.104  Sum_probs=54.3

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHH-hCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLAL-SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal-~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      +-..++|+|+|+|+.|...++.+.+ .|+.+|++.+.                   ...|++..++.+++..  ..+...
T Consensus       122 ~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~R-------------------s~~~a~~~a~~~~~~g--~~~~~~  180 (314)
T PRK06141        122 RKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGR-------------------DPAKAEALAAELRAQG--FDAEVV  180 (314)
T ss_pred             CCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcC-------------------CHHHHHHHHHHHHhcC--CceEEe
Confidence            3456889999999999999997765 68888998752                   2467777777776542  223321


Q ss_pred             ccCCCCCcchHhhcccccEEEEccCC
Q 008516           88 HANVKDPKFNVEFFKQFNVVLNGLDN  113 (563)
Q Consensus        88 ~~~i~~~~~~~~~~~~~dvVi~alDn  113 (563)
                      .       ...+...++|+|++++..
T Consensus       181 ~-------~~~~av~~aDIVi~aT~s  199 (314)
T PRK06141        181 T-------DLEAAVRQADIISCATLS  199 (314)
T ss_pred             C-------CHHHHHhcCCEEEEeeCC
Confidence            1       124567899999999874

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=92.07  E-value=0.57  Score=48.74  Aligned_cols=33  Identities=27%  Similarity=0.387  Sum_probs=28.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCC-CeEEEEeC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGF-QDIHIIDM   44 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gv-g~I~iiD~   44 (563)
                      ..+|.|||+|.+|..+++.|...|. .+++++|.
T Consensus         6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr   39 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADR   39 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEEC
Confidence            4689999999999999999999997 47888774

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=91.98  E-value=0.61  Score=48.57  Aligned_cols=72  Identities=17%  Similarity=0.262  Sum_probs=50.0

Q ss_pred             EEEECCcHHHHHHHHHHHHhCC-CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC---ceEEEeccC
Q 008516           15 VLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ---MSITAHHAN   90 (563)
Q Consensus        15 VlvvGaGgiG~ellknLal~Gv-g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~---v~I~~~~~~   90 (563)
                      |.|||+|++|+.++-.|+..|+ .+|+++|.+                   +.|++..+.-+.+..+.   +++... . 
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~-------------------~~~~~g~~~DL~~~~~~~~~~~i~~~-~-   59 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVN-------------------EEKAKGDALDLSHASAFLATGTIVRG-G-   59 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------ccHHHHHHHhHHHhccccCCCeEEEC-C-
Confidence            5799999999999999999997 569999832                   34555555566655543   222211 1 


Q ss_pred             CCCCcchHhhcccccEEEEccCC
Q 008516           91 VKDPKFNVEFFKQFNVVLNGLDN  113 (563)
Q Consensus        91 i~~~~~~~~~~~~~dvVi~alDn  113 (563)
                            +.+-++++|+||.+...
T Consensus        60 ------~~~~l~~aDiVIitag~   76 (300)
T cd00300          60 ------DYADAADADIVVITAGA   76 (300)
T ss_pred             ------CHHHhCCCCEEEEcCCC
Confidence                  13468899999998654

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=91.96  E-value=0.65  Score=48.61  Aligned_cols=84  Identities=25%  Similarity=0.354  Sum_probs=50.4

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC-
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV-   91 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i-   91 (563)
                      +||+|+|+|++||.++-.|++.| ..++++-               |      ++-   .+++++-  +..|.....+. 
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~---------------R------~~~---~~~l~~~--GL~i~~~~~~~~   53 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAG-HDVTLLV---------------R------SRR---LEALKKK--GLRIEDEGGNFT   53 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCC-CeEEEEe---------------c------HHH---HHHHHhC--CeEEecCCCccc
Confidence            48999999999999999999999 7666642               1      111   1222222  34444433311 


Q ss_pred             --CCCcchHhhcccccEEEEccCCHHHHHHHHHH
Q 008516           92 --KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL  123 (563)
Q Consensus        92 --~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~  123 (563)
                        .....+.+....+|+||.++-+......+..+
T Consensus        54 ~~~~~~~~~~~~~~~Dlviv~vKa~q~~~al~~l   87 (307)
T COG1893          54 TPVVAATDAEALGPADLVIVTVKAYQLEEALPSL   87 (307)
T ss_pred             cccccccChhhcCCCCEEEEEeccccHHHHHHHh
Confidence              11122345566899999987655544444443

>PRK05867 short chain dehydrogenase; Provisional

Probab=91.92  E-value=0.71  Score=45.95  Aligned_cols=33  Identities=27%  Similarity=0.501  Sum_probs=28.1

Q ss_pred             HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEe
Q 008516           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD   43 (563)
                      +++++++|.|+ ||||.++++.|+..|. ++.+++
T Consensus         7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~   40 (253)
T PRK05867          7 LHGKRALITGASTGIGKRVALAYVEAGA-QVAIAA   40 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEc
Confidence            56788999996 8999999999999997 566654

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=91.90  E-value=1.4  Score=43.90  Aligned_cols=82  Identities=12%  Similarity=0.244  Sum_probs=49.7

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCC---CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGF---QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gv---g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      +..||.|+|+|.+|..+++.|...|.   ..+.+++..                  ...|++.+++   ++  ++.+  .
T Consensus         3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~------------------~~~~~~~~~~---~~--~~~~--~   57 (245)
T PRK07634          3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRS------------------NVEKLDQLQA---RY--NVST--T   57 (245)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCC------------------CHHHHHHHHH---Hc--CcEE--e
Confidence            45789999999999999999998873   224333210                  0122222222   22  1221  1


Q ss_pred             ccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHH
Q 008516           88 HANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLC  124 (563)
Q Consensus        88 ~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c  124 (563)
                      . +      ..+.+++.|+|+.++-+...+..+.++.
T Consensus        58 ~-~------~~~~~~~~DiViiavp~~~~~~v~~~l~   87 (245)
T PRK07634         58 T-D------WKQHVTSVDTIVLAMPPSAHEELLAELS   87 (245)
T ss_pred             C-C------hHHHHhcCCEEEEecCHHHHHHHHHHHH
Confidence            1 1      2345688999999998766666665543

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=91.87  E-value=0.79  Score=48.33  Aligned_cols=75  Identities=15%  Similarity=0.173  Sum_probs=54.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHH-HhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           12 GAKVLMVGAGGIGCELLKTLA-LSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLa-l~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      .++++|+|+|+.|-..++.|. ..|+.+++|.+.                   ...|++..++.+.+.. .+++.... +
T Consensus       129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R-------------------~~~~a~~~a~~~~~~~-g~~v~~~~-~  187 (326)
T TIGR02992       129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWAR-------------------DSAKAEALALQLSSLL-GIDVTAAT-D  187 (326)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECC-------------------CHHHHHHHHHHHHhhc-CceEEEeC-C
Confidence            468999999999999999997 578889998742                   2357777777776433 24443321 1


Q ss_pred             CCCCcchHhhcccccEEEEccCC
Q 008516           91 VKDPKFNVEFFKQFNVVLNGLDN  113 (563)
Q Consensus        91 i~~~~~~~~~~~~~dvVi~alDn  113 (563)
                            ..+.+.++|+|++|+..
T Consensus       188 ------~~~av~~aDiVvtaT~s  204 (326)
T TIGR02992       188 ------PRAAMSGADIIVTTTPS  204 (326)
T ss_pred             ------HHHHhccCCEEEEecCC
Confidence                  24557899999999865

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK05866 short chain dehydrogenase; Provisional

Probab=91.87  E-value=0.69  Score=47.64  Aligned_cols=36  Identities=25%  Similarity=0.460  Sum_probs=29.7

Q ss_pred             HHHcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            8 EAIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         8 ~kL~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ..+.+++++|.|+ ||||.++++.|+..|. ++.++|.
T Consensus        36 ~~~~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R   72 (293)
T PRK05866         36 VDLTGKRILLTGASSGIGEAAAEQFARRGA-TVVAVAR   72 (293)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence            3456788999985 9999999999999996 6777663

>PRK09186 flagellin modification protein A; Provisional

Probab=91.85  E-value=0.66  Score=46.01  Aligned_cols=33  Identities=36%  Similarity=0.555  Sum_probs=27.2

Q ss_pred             HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEe
Q 008516           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD   43 (563)
                      +.+++|+|.|+ |+||.++++.|+..|. ++.+++
T Consensus         2 ~~~k~vlItGas~giG~~~a~~l~~~g~-~v~~~~   35 (256)
T PRK09186          2 LKGKTILITGAGGLIGSALVKAILEAGG-IVIAAD   35 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEe
Confidence            45788999985 8999999999999997 466654

>PRK07340 ornithine cyclodeaminase; Validated

Probab=91.83  E-value=0.58  Score=48.89  Aligned_cols=76  Identities=11%  Similarity=0.134  Sum_probs=55.2

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHH-hCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLAL-SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal-~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      ....+++|+|+|+.|...++.+.. .|+.++.+.|.                   ...|++..++.+++..+  .+.  .
T Consensus       123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r-------------------~~~~a~~~a~~~~~~~~--~~~--~  179 (304)
T PRK07340        123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGR-------------------TAASAAAFCAHARALGP--TAE--P  179 (304)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcC-------------------CHHHHHHHHHHHHhcCC--eeE--E
Confidence            456889999999999999999974 68888888753                   24678888888765422  222  1


Q ss_pred             cCCCCCcchHhhcccccEEEEccCCH
Q 008516           89 ANVKDPKFNVEFFKQFNVVLNGLDNL  114 (563)
Q Consensus        89 ~~i~~~~~~~~~~~~~dvVi~alDn~  114 (563)
                      .+      ..+.+.++|+|++|+-+.
T Consensus       180 ~~------~~~av~~aDiVitaT~s~  199 (304)
T PRK07340        180 LD------GEAIPEAVDLVVTATTSR  199 (304)
T ss_pred             CC------HHHHhhcCCEEEEccCCC
Confidence            11      245678999999998753

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=91.82  E-value=0.87  Score=47.92  Aligned_cols=90  Identities=22%  Similarity=0.344  Sum_probs=53.2

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK   92 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~   92 (563)
                      .+|.|+|+|+.|+.+++.|+..| ..+++...|.-....++..-                 .-.+.-|++..   +.++.
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng-~~V~lw~r~~~~~~~i~~~~-----------------~N~~yLp~i~l---p~~l~   60 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNG-HEVRLWGRDEEIVAEINETR-----------------ENPKYLPGILL---PPNLK   60 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcC-CeeEEEecCHHHHHHHHhcC-----------------cCccccCCccC---Ccccc
Confidence            68999999999999999999999 45665543321111111100                 00011122221   11111


Q ss_pred             CCcchHhhcccccEEEEccCCHHHHHHHHHH
Q 008516           93 DPKFNVEFFKQFNVVLNGLDNLDARRHVNRL  123 (563)
Q Consensus        93 ~~~~~~~~~~~~dvVi~alDn~~ar~~in~~  123 (563)
                      -...-.+..+++|+|+-++-+...|..+.++
T Consensus        61 at~Dl~~a~~~ad~iv~avPs~~~r~v~~~l   91 (329)
T COG0240          61 ATTDLAEALDGADIIVIAVPSQALREVLRQL   91 (329)
T ss_pred             cccCHHHHHhcCCEEEEECChHHHHHHHHHH
Confidence            1112245677899999999988888877776

>PRK08339 short chain dehydrogenase; Provisional

Probab=91.75  E-value=0.76  Score=46.35  Aligned_cols=34  Identities=24%  Similarity=0.467  Sum_probs=28.7

Q ss_pred             HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      |+++.++|.|+ ||||.++++.|+..|. ++.++|.
T Consensus         6 l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r   40 (263)
T PRK08339          6 LSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSR   40 (263)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence            56778899985 7999999999999997 5777763

>PRK06194 hypothetical protein; Provisional

Probab=91.64  E-value=0.76  Score=46.62  Aligned_cols=34  Identities=24%  Similarity=0.462  Sum_probs=28.9

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +++++++|.| +||||.++++.|+..|. +++++|.
T Consensus         4 ~~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r   38 (287)
T PRK06194          4 FAGKVAVITGAASGFGLAFARIGAALGM-KLVLADV   38 (287)
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeC
Confidence            4567899998 58999999999999997 6888774

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=91.59  E-value=0.45  Score=49.45  Aligned_cols=117  Identities=20%  Similarity=0.315  Sum_probs=65.0

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhh-CCCceEEEeccC-C
Q 008516           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKF-RPQMSITAHHAN-V   91 (563)
Q Consensus        14 ~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~-np~v~I~~~~~~-i   91 (563)
                      +|.+||+|.+|..++++|+..|. ++++.|.+.-....+.        +.|-.-+....+.+... ++++-+...... .
T Consensus         2 ~Ig~IGlG~MG~~mA~~L~~~g~-~v~v~dr~~~~~~~~~--------~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~   72 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRLLRGGH-EVVGYDRNPEAVEALA--------EEGATGADSLEELVAKLPAPRVVWLMVPAGEI   72 (301)
T ss_pred             EEEEEcccHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHH--------HCCCeecCCHHHHHhhcCCCCEEEEEecCCcH
Confidence            79999999999999999999996 5888886532111110        01211111122222222 344444444332 1


Q ss_pred             CCCcch--HhhcccccEEEEc-cCCHHHHHHHHHHHHhcCCCEEEeccccc
Q 008516           92 KDPKFN--VEFFKQFNVVLNG-LDNLDARRHVNRLCLAADVPLVESGTTGF  139 (563)
Q Consensus        92 ~~~~~~--~~~~~~~dvVi~a-lDn~~ar~~in~~c~~~~~pli~~gt~G~  139 (563)
                      .+....  ...++.-++||++ +-++..-..+.+.+...++.++++...|.
T Consensus        73 ~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~  123 (301)
T PRK09599         73 TDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGG  123 (301)
T ss_pred             HHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcC
Confidence            011000  1123444677775 33444455566778888888888877764

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=91.55  E-value=1.5  Score=44.72  Aligned_cols=31  Identities=19%  Similarity=0.456  Sum_probs=25.0

Q ss_pred             cEEEECC-cHHHHHHHHHHHHhCC-CeEEEEeC
Q 008516           14 KVLMVGA-GGIGCELLKTLALSGF-QDIHIIDM   44 (563)
Q Consensus        14 ~VlvvGa-GgiG~ellknLal~Gv-g~I~iiD~   44 (563)
                      +|+|.|+ |.+|..+++.|...|- .+++++|.
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~   33 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDK   33 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecC
Confidence            5899985 9999999999998873 36776653

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=91.55  E-value=0.66  Score=47.87  Aligned_cols=105  Identities=21%  Similarity=0.266  Sum_probs=59.1

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516           13 AKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (563)
Q Consensus        13 ~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i   91 (563)
                      +||||.|+ |-||+.+++.|...|  +++.+|...-          +...|+-.  .+.+.+.+....|++-|+.  .-.
T Consensus         1 m~iLVtG~~GfiGs~l~~~L~~~g--~V~~~~~~~~----------~~~~Dl~d--~~~~~~~~~~~~~D~Vih~--Aa~   64 (299)
T PRK09987          1 MNILLFGKTGQVGWELQRALAPLG--NLIALDVHST----------DYCGDFSN--PEGVAETVRKIRPDVIVNA--AAH   64 (299)
T ss_pred             CeEEEECCCCHHHHHHHHHhhccC--CEEEeccccc----------cccCCCCC--HHHHHHHHHhcCCCEEEEC--Ccc
Confidence            37999995 999999999999888  5777774310          11234433  2334455555556544332  111


Q ss_pred             CCCc---chHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEecccccee
Q 008516           92 KDPK---FNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLG  141 (563)
Q Consensus        92 ~~~~---~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G  141 (563)
                      ....   .+.+..        -..|..+-..+-+.|...++++|..++...+|
T Consensus        65 ~~~~~~~~~~~~~--------~~~N~~~~~~l~~aa~~~g~~~v~~Ss~~Vy~  109 (299)
T PRK09987         65 TAVDKAESEPEFA--------QLLNATSVEAIAKAANEVGAWVVHYSTDYVFP  109 (299)
T ss_pred             CCcchhhcCHHHH--------HHHHHHHHHHHHHHHHHcCCeEEEEccceEEC
Confidence            1000   000000        01234444566778888899999887765443

>PRK07576 short chain dehydrogenase; Provisional

Probab=91.46  E-value=0.59  Score=47.06  Aligned_cols=37  Identities=22%  Similarity=0.426  Sum_probs=30.8

Q ss_pred             HHHcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            8 EAIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         8 ~kL~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .++.+++++|.|+ ||||.++++.|+..|. ++.++|.+
T Consensus         5 ~~~~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~   42 (264)
T PRK07576          5 FDFAGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRS   42 (264)
T ss_pred             ccCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            3577889999986 8999999999999986 47777754

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=91.44  E-value=1.4  Score=45.31  Aligned_cols=31  Identities=29%  Similarity=0.275  Sum_probs=27.6

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        14 ~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +|.|||+|.+|..+++.|...|. +++++|.+
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~   32 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRR   32 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCC-EEEEEECC
Confidence            79999999999999999999986 68888753

>PRK08655 prephenate dehydrogenase; Provisional

Probab=91.41  E-value=0.71  Score=50.75  Aligned_cols=90  Identities=17%  Similarity=0.270  Sum_probs=55.6

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (563)
Q Consensus        13 ~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i   91 (563)
                      ++|.|+| +|++|..+++.|...|. +++++|.+.                   .++...+   .+.  ++.+   ..  
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~-~V~v~~r~~-------------------~~~~~~a---~~~--gv~~---~~--   50 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGF-EVIVTGRDP-------------------KKGKEVA---KEL--GVEY---AN--   50 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCC-EEEEEECCh-------------------HHHHHHH---HHc--CCee---cc--
Confidence            3799997 89999999999999996 678777431                   1111111   111  1111   00  


Q ss_pred             CCCcchHhhcccccEEEEccCCHHHHHHHHHHHH--hcCCCEEEecc
Q 008516           92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL--AADVPLVESGT  136 (563)
Q Consensus        92 ~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~--~~~~pli~~gt  136 (563)
                          ...+...++|+||.|+-.......+.++..  ..+..+++.++
T Consensus        51 ----~~~e~~~~aDvVIlavp~~~~~~vl~~l~~~l~~~~iViDvsS   93 (437)
T PRK08655         51 ----DNIDAAKDADIVIISVPINVTEDVIKEVAPHVKEGSLLMDVTS   93 (437)
T ss_pred             ----CHHHHhccCCEEEEecCHHHHHHHHHHHHhhCCCCCEEEEccc
Confidence                123456789999999876555555555543  23556777775

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=91.39  E-value=0.73  Score=45.35  Aligned_cols=34  Identities=26%  Similarity=0.571  Sum_probs=29.4

Q ss_pred             HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +++.+++|.|+ |+||..+++.|+..|. ++.++|.
T Consensus         3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r   37 (253)
T PRK08217          3 LKDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDL   37 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            56789999997 9999999999999997 5777763

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=91.33  E-value=0.25  Score=53.93  Aligned_cols=36  Identities=36%  Similarity=0.564  Sum_probs=32.9

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .+.+.+|+|+|+|.+|..+++.|...|+.+++++|.
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~r  212 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANR  212 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeC
Confidence            367899999999999999999999999999999864

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=91.30  E-value=0.35  Score=56.37  Aligned_cols=160  Identities=16%  Similarity=0.225  Sum_probs=90.4

Q ss_pred             CcEEEECCcHHHHHHHHHHH-HhCCCeEEEEeCCccCcccCcccc--C---C-CCCCCCchHHHHHHHHHHhhCCCceEE
Q 008516           13 AKVLMVGAGGIGCELLKTLA-LSGFQDIHIIDMDTIEVSNLNRQF--L---F-RQSHVGQSKAKVARDAVLKFRPQMSIT   85 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLa-l~Gvg~I~iiD~D~Ve~sNLnRqf--L---f-~~~diGk~Ka~va~~~l~~~np~v~I~   85 (563)
                      ++|.|||+|.+|+.++-.++ ..|+ .++++|.+.   ..+.|-.  +   + ..-.-|+-..+.+.+.+.      +|+
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~---~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------~i~  379 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINP---QGINHALKYSWDLLDKKVKRRHLKPSERDKQMA------LIS  379 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHh------cEE
Confidence            57999999999999999999 8897 689998653   2221110  0   0 000011111111111111      121


Q ss_pred             EeccCCCCCcchHhhcccccEEEEcc-CCHHHHHHHHHHHHhcCC--CEEEeccccce-eeEEEEeCCCCccccccCCCC
Q 008516           86 AHHANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLAADV--PLVESGTTGFL-GQVTVHVKGKTECYECQPKPA  161 (563)
Q Consensus        86 ~~~~~i~~~~~~~~~~~~~dvVi~al-Dn~~ar~~in~~c~~~~~--pli~~gt~G~~-G~v~v~~~~~t~Cy~C~~~~~  161 (563)
                      ...        +.+-++++|+||.|. .+.+..+.+-+..-..-.  .++.+.|.+.. ..+.-......-+...+.-.+
T Consensus       380 ~~~--------~~~~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P  451 (708)
T PRK11154        380 GTT--------DYRGFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSP  451 (708)
T ss_pred             EeC--------ChHHhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCc
Confidence            111        113368999999985 667777666555444322  46666666532 111111122223444445556


Q ss_pred             CCCCCceeeccCCCCchhHHHHHHHHHHHH
Q 008516          162 PKTYPVCTITSTPSKFVHCIVWAKDLLFAK  191 (563)
Q Consensus       162 ~~~~p~cti~~~p~~~~hci~~a~~~lf~~  191 (563)
                      +..-|...|...|.+....+..+.+ +...
T Consensus       452 ~~~~~lVEvv~g~~Ts~~~~~~~~~-~~~~  480 (708)
T PRK11154        452 VEKMPLVEVIPHAKTSAETIATTVA-LAKK  480 (708)
T ss_pred             cccCceEEEECCCCCCHHHHHHHHH-HHHH
Confidence            6667889998888888888998887 3443

>TIGR00936 ahcY adenosylhomocysteinase

Probab=91.20  E-value=0.83  Score=49.68  Aligned_cols=36  Identities=22%  Similarity=0.322  Sum_probs=31.9

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~   46 (563)
                      +.+++|+|+|+|.+|.-+++.+...|. +++++|.|.
T Consensus       193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp  228 (406)
T TIGR00936       193 IAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDP  228 (406)
T ss_pred             CCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCCh
Confidence            578899999999999999999999998 588888554

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=91.15  E-value=0.42  Score=49.65  Aligned_cols=32  Identities=28%  Similarity=0.506  Sum_probs=27.5

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (563)
Q Consensus        14 ~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~   46 (563)
                      +|.|||+|.+|..++.+|+..|. ++.+.|.+.
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~   33 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQ   33 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            79999999999999999999996 577777543

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=91.09  E-value=1.4  Score=38.39  Aligned_cols=84  Identities=20%  Similarity=0.277  Sum_probs=54.9

Q ss_pred             EEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCCCC
Q 008516           15 VLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDP   94 (563)
Q Consensus        15 VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~~~   94 (563)
                      |+|+|.|.+|-++++.|...| -.++++|.|.-.                       .+.+++..    +..+.++.++.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~-~~vvvid~d~~~-----------------------~~~~~~~~----~~~i~gd~~~~   52 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGG-IDVVVIDRDPER-----------------------VEELREEG----VEVIYGDATDP   52 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTT-SEEEEEESSHHH-----------------------HHHHHHTT----SEEEES-TTSH
T ss_pred             eEEEcCCHHHHHHHHHHHhCC-CEEEEEECCcHH-----------------------HHHHHhcc----cccccccchhh
Confidence            689999999999999999954 579999866421                       11222221    23444555332


Q ss_pred             -cchHhhcccccEEEEccCCHHHHHHHHHHHHh
Q 008516           95 -KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA  126 (563)
Q Consensus        95 -~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~  126 (563)
                       .+...-+++++.|+.++++...-..+-..++.
T Consensus        53 ~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~   85 (116)
T PF02254_consen   53 EVLERAGIEKADAVVILTDDDEENLLIALLARE   85 (116)
T ss_dssp             HHHHHTTGGCESEEEEESSSHHHHHHHHHHHHH
T ss_pred             hHHhhcCccccCEEEEccCCHHHHHHHHHHHHH
Confidence             12233467889999999888777777777776

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=91.07  E-value=0.43  Score=55.73  Aligned_cols=163  Identities=13%  Similarity=0.125  Sum_probs=89.2

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCccc----CccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSN----LNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sN----LnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      .+|.|||+|.+|+.++-.++..|. .++++|.+.=....    +.+. |=+.-.-|+-..+.+.+.+.++      +...
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~-l~~~~~~g~~~~~~~~~~~~~i------~~~~  385 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLGMTEAAKL-LNKQVERGKIDGAKMAGVLSSI------RPTL  385 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHH-HHHHHHcCCCChhhHHHHHhCe------EEeC
Confidence            479999999999999999999997 79999955322111    0000 0000011222222222222222      1111


Q ss_pred             cCCCCCcchHhhcccccEEEEcc-CCHHHHHHHHHHHHhcCC--CEEEeccccce-eeEEEEeCCCCccccccCCCCCCC
Q 008516           89 ANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLAADV--PLVESGTTGFL-GQVTVHVKGKTECYECQPKPAPKT  164 (563)
Q Consensus        89 ~~i~~~~~~~~~~~~~dvVi~al-Dn~~ar~~in~~c~~~~~--pli~~gt~G~~-G~v~v~~~~~t~Cy~C~~~~~~~~  164 (563)
                            .  .+-++++|+||.|. .+.+..+.+-+..-..-.  .++.+.|.+.. ..+.-......-+..-+.-.++..
T Consensus       386 ------~--~~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~  457 (715)
T PRK11730        386 ------D--YAGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHR  457 (715)
T ss_pred             ------C--HHHhcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccc
Confidence                  1  13368999999985 667776665544433222  46666665532 111111122222334344445555


Q ss_pred             CCceeeccCCCCchhHHHHHHHHHHHHH
Q 008516          165 YPVCTITSTPSKFVHCIVWAKDLLFAKL  192 (563)
Q Consensus       165 ~p~cti~~~p~~~~hci~~a~~~lf~~l  192 (563)
                      -|...|...+.+...++..+.+ +...+
T Consensus       458 ~~lVEvv~g~~T~~~~~~~~~~-~~~~l  484 (715)
T PRK11730        458 MPLVEVIRGEKTSDETIATVVA-YASKM  484 (715)
T ss_pred             cceEEeeCCCCCCHHHHHHHHH-HHHHh
Confidence            6777787778888888998888 44443

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=91.04  E-value=3.1  Score=41.09  Aligned_cols=83  Identities=27%  Similarity=0.232  Sum_probs=50.3

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC--Cc--eEEEe
Q 008516           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP--QM--SITAH   87 (563)
Q Consensus        13 ~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np--~v--~I~~~   87 (563)
                      ++|.|+| +|.+|+.+++.|+..| .++++.|.+                   ..|++.+++.......  ..  ++...
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G-~~V~v~~r~-------------------~~~~~~l~~~~~~~~~~~g~~~~~~~~   60 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAG-NKIIIGSRD-------------------LEKAEEAAAKALEELGHGGSDIKVTGA   60 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCC-CEEEEEEcC-------------------HHHHHHHHHHHHhhccccCCCceEEEe
Confidence            3799997 8999999999999999 467776532                   2233333322211111  11  11111


Q ss_pred             ccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHH
Q 008516           88 HANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL  123 (563)
Q Consensus        88 ~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~  123 (563)
                              ...+..+++|+||.|+-....+..+.++
T Consensus        61 --------~~~ea~~~aDvVilavp~~~~~~~l~~l   88 (219)
T TIGR01915        61 --------DNAEAAKRADVVILAVPWDHVLKTLESL   88 (219)
T ss_pred             --------ChHHHHhcCCEEEEECCHHHHHHHHHHH
Confidence                    1234577899999998876666665554

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=91.02  E-value=1.2  Score=45.78  Aligned_cols=64  Identities=28%  Similarity=0.529  Sum_probs=49.8

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      ++.++++|-| .+|||-|+++.|++-|. ++.++-               |    -+.|-+.+++.+++.+ .++++.+.
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~-~liLva---------------R----~~~kL~~la~~l~~~~-~v~v~vi~   62 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGY-NLILVA---------------R----REDKLEALAKELEDKT-GVEVEVIP   62 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEe---------------C----cHHHHHHHHHHHHHhh-CceEEEEE
Confidence            4677899999 58999999999999997 466652               1    2356778888888877 78888888


Q ss_pred             cCCCCC
Q 008516           89 ANVKDP   94 (563)
Q Consensus        89 ~~i~~~   94 (563)
                      .++++.
T Consensus        63 ~DLs~~   68 (265)
T COG0300          63 ADLSDP   68 (265)
T ss_pred             CcCCCh
Confidence            887543

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=90.98  E-value=1.4  Score=48.01  Aligned_cols=94  Identities=20%  Similarity=0.275  Sum_probs=59.1

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      ...+++|+|+|.+|..+++.|...|. .++++|.|.=                   +.+    .+++..+++.  .+.++
T Consensus       230 ~~~~iiIiG~G~~g~~l~~~L~~~~~-~v~vid~~~~-------------------~~~----~~~~~~~~~~--~i~gd  283 (453)
T PRK09496        230 PVKRVMIVGGGNIGYYLAKLLEKEGY-SVKLIERDPE-------------------RAE----ELAEELPNTL--VLHGD  283 (453)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHH-------------------HHH----HHHHHCCCCe--EEECC
Confidence            36889999999999999999999887 5888874431                   111    1222222332  23334


Q ss_pred             CCCC-cchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCC
Q 008516           91 VKDP-KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVP  130 (563)
Q Consensus        91 i~~~-~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~p  130 (563)
                      .++. .+...-++++|.|+.++++...-..+...++..+.+
T Consensus       284 ~~~~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~~  324 (453)
T PRK09496        284 GTDQELLEEEGIDEADAFIALTNDDEANILSSLLAKRLGAK  324 (453)
T ss_pred             CCCHHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhCCC
Confidence            3321 122234678999999988766665665666665543

>PRK08291 ectoine utilization protein EutC; Validated

Probab=90.92  E-value=1.2  Score=47.10  Aligned_cols=75  Identities=13%  Similarity=0.189  Sum_probs=53.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHHH-hCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           12 GAKVLMVGAGGIGCELLKTLAL-SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal-~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      .++++|+|+|+.|...+..|.. .|+.+++|++.                   ...|++..++.+++.. .+++..... 
T Consensus       132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R-------------------~~~~a~~l~~~~~~~~-g~~v~~~~d-  190 (330)
T PRK08291        132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWAR-------------------DAAKAEAYAADLRAEL-GIPVTVARD-  190 (330)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcC-------------------CHHHHHHHHHHHhhcc-CceEEEeCC-
Confidence            4689999999999999999985 57889999742                   2347777777765432 234433211 


Q ss_pred             CCCCcchHhhcccccEEEEccCC
Q 008516           91 VKDPKFNVEFFKQFNVVLNGLDN  113 (563)
Q Consensus        91 i~~~~~~~~~~~~~dvVi~alDn  113 (563)
                            ..+.+.++|+|++|+..
T Consensus       191 ------~~~al~~aDiVi~aT~s  207 (330)
T PRK08291        191 ------VHEAVAGADIIVTTTPS  207 (330)
T ss_pred             ------HHHHHccCCEEEEeeCC
Confidence                  13557889999999865

>PLN02206 UDP-glucuronate decarboxylase

Probab=90.88  E-value=1.5  Score=48.29  Aligned_cols=104  Identities=18%  Similarity=0.247  Sum_probs=60.8

Q ss_pred             cCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        11 ~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      +++||+|.| .|-||+.+++.|...|. ++..+|.....                . +... ....  .++  +++.+..
T Consensus       118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~-~V~~ld~~~~~----------------~-~~~~-~~~~--~~~--~~~~i~~  174 (442)
T PLN02206        118 KGLRVVVTGGAGFVGSHLVDRLMARGD-SVIVVDNFFTG----------------R-KENV-MHHF--SNP--NFELIRH  174 (442)
T ss_pred             CCCEEEEECcccHHHHHHHHHHHHCcC-EEEEEeCCCcc----------------c-hhhh-hhhc--cCC--ceEEEEC
Confidence            568999999 59999999999999996 56666642210                0 0000 0000  122  2333444


Q ss_pred             CCCCCcchHhhcccccEEEEccC---------CHH--------HHHHHHHHHHhcCCCEEEeccccceee
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGLD---------NLD--------ARRHVNRLCLAADVPLVESGTTGFLGQ  142 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~alD---------n~~--------ar~~in~~c~~~~~pli~~gt~G~~G~  142 (563)
                      ++.+     ..+.++|+||.+..         ++.        .-..+-+.|+..++++|..++...+|.
T Consensus       175 D~~~-----~~l~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V~~SS~~VYg~  239 (442)
T PLN02206        175 DVVE-----PILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGD  239 (442)
T ss_pred             CccC-----hhhcCCCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECChHHhCC
Confidence            4422     23457898888431         111        113445677788888998888765553

>PTZ00325 malate dehydrogenase; Provisional

Probab=90.86  E-value=0.6  Score=49.23  Aligned_cols=35  Identities=34%  Similarity=0.493  Sum_probs=30.2

Q ss_pred             HcCCcEEEECC-cHHHHHHHHHHHHhCCC-eEEEEeC
Q 008516           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQ-DIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvGa-GgiG~ellknLal~Gvg-~I~iiD~   44 (563)
                      ++-.||.|+|+ |.+|+.++-.|+..|.. +|.++|-
T Consensus         6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di   42 (321)
T PTZ00325          6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI   42 (321)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence            44569999998 99999999999988874 7999985

>PRK06223 malate dehydrogenase; Reviewed

Probab=90.85  E-value=1  Score=46.75  Aligned_cols=32  Identities=34%  Similarity=0.678  Sum_probs=29.5

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .||.|+|+|.+|..++..++..|.+++.++|.
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~   34 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDI   34 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEEC
Confidence            58999999999999999999998769999985

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=90.84  E-value=0.62  Score=49.99  Aligned_cols=96  Identities=13%  Similarity=0.194  Sum_probs=56.0

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCC-----C-eEEEEeCCccCcccCccccCCCCCCC-CchHHHHHHHHHH--hhCCC
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGF-----Q-DIHIIDMDTIEVSNLNRQFLFRQSHV-GQSKAKVARDAVL--KFRPQ   81 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gv-----g-~I~iiD~D~Ve~sNLnRqfLf~~~di-Gk~Ka~va~~~l~--~~np~   81 (563)
                      ...+|.|+|+|+.|+.++..|+..|.     + ++++...|.               ++ |+.-++.+.+.=.  +.-|+
T Consensus        10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~---------------~~~~~~~~~~in~~~~N~~ylp~   74 (365)
T PTZ00345         10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEE---------------IVEGEKLSDIINTKHENVKYLPG   74 (365)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecc---------------cccchHHHHHHHhcCCCcccCCC
Confidence            45689999999999999999999873     3 566653322               21 2222222211100  11133


Q ss_pred             ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHH
Q 008516           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLC  124 (563)
Q Consensus        82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c  124 (563)
                      +++   +.++.-.....+..++.|+|+.|+-....|..+.++.
T Consensus        75 ~~L---p~ni~~tsdl~eav~~aDiIvlAVPsq~l~~vl~~l~  114 (365)
T PTZ00345         75 IKL---PDNIVAVSDLKEAVEDADLLIFVIPHQFLESVLSQIK  114 (365)
T ss_pred             CcC---CCceEEecCHHHHHhcCCEEEEEcChHHHHHHHHHhc
Confidence            322   2222111112356789999999999888787777764

>PTZ00117 malate dehydrogenase; Provisional

Probab=90.83  E-value=0.32  Score=51.18  Aligned_cols=36  Identities=28%  Similarity=0.471  Sum_probs=32.3

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .++.||.|||+|.+|..++-.|++.|+..+.|+|-+
T Consensus         3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~   38 (319)
T PTZ00117          3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVI   38 (319)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECC
Confidence            357899999999999999999999998889999953

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=90.83  E-value=0.35  Score=46.30  Aligned_cols=36  Identities=25%  Similarity=0.414  Sum_probs=30.8

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .|.+++|.|+|.|.||.++++-|...|. ++..+|..
T Consensus        33 ~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~   68 (178)
T PF02826_consen   33 ELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRS   68 (178)
T ss_dssp             -STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESS
T ss_pred             ccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEeccc
Confidence            5789999999999999999999999998 78887743

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>CHL00194 ycf39 Ycf39; Provisional

Probab=90.79  E-value=1.3  Score=46.04  Aligned_cols=98  Identities=14%  Similarity=0.219  Sum_probs=58.7

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516           13 AKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (563)
Q Consensus        13 ~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i   91 (563)
                      ++|+|.|+ |-+|..+++.|...|. +++.++.+.                   .++.    .+..  +  .++....++
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~R~~-------------------~~~~----~l~~--~--~v~~v~~Dl   52 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGY-QVRCLVRNL-------------------RKAS----FLKE--W--GAELVYGDL   52 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC-eEEEEEcCh-------------------HHhh----hHhh--c--CCEEEECCC
Confidence            37999995 9999999999999996 576665321                   1111    1111  1  344555666


Q ss_pred             CCCcchHhhcccccEEEEccCC------------HHHHHHHHHHHHhcCC-CEEEecccc
Q 008516           92 KDPKFNVEFFKQFNVVLNGLDN------------LDARRHVNRLCLAADV-PLVESGTTG  138 (563)
Q Consensus        92 ~~~~~~~~~~~~~dvVi~alDn------------~~ar~~in~~c~~~~~-pli~~gt~G  138 (563)
                      ++...-.+.++++|+|+++...            ...-..+-+.|...++ .+|..++.|
T Consensus        53 ~d~~~l~~al~g~d~Vi~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~~  112 (317)
T CHL00194         53 SLPETLPPSFKGVTAIIDASTSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSILN  112 (317)
T ss_pred             CCHHHHHHHHCCCCEEEECCCCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEecccc
Confidence            5443334567888998886421            1222345566777775 566665543

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=90.76  E-value=0.45  Score=53.60  Aligned_cols=34  Identities=26%  Similarity=0.417  Sum_probs=30.6

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +++++++|+|+||+|..+++.|+..|+ +|++++.
T Consensus       377 ~~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR  410 (529)
T PLN02520        377 LAGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANR  410 (529)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcC
Confidence            567889999999999999999999999 8988763

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=90.76  E-value=0.98  Score=44.26  Aligned_cols=32  Identities=34%  Similarity=0.595  Sum_probs=26.7

Q ss_pred             HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEE
Q 008516           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHII   42 (563)
Q Consensus        10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~ii   42 (563)
                      |++++++|.|+ |++|.++++.|+..|.. +.++
T Consensus         3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~-v~~~   35 (247)
T PRK05565          3 LMGKVAIVTGASGGIGRAIAELLAKEGAK-VVIA   35 (247)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEE
Confidence            66789999985 99999999999999975 4444

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=90.75  E-value=1.4  Score=48.40  Aligned_cols=108  Identities=19%  Similarity=0.254  Sum_probs=75.3

Q ss_pred             CcEEEECCcHH-HHHHHHHHHHh----CCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516           13 AKVLMVGAGGI-GCELLKTLALS----GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus        13 ~~VlvvGaGgi-G~ellknLal~----Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      .||.|||+|+. +-++++.|+..    .+++|.++|-|.   ..|.+            =...+++.+++..+.++|+..
T Consensus         1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~---~Rl~~------------v~~l~~~~~~~~g~~~~v~~t   65 (425)
T cd05197           1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDE---ERLDI------------ILTIAKRYVEEVGADIKFEKT   65 (425)
T ss_pred             CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCH---HHHHH------------HHHHHHHHHHhhCCCeEEEEe
Confidence            37999999996 45778888744    458999999553   22211            123455666677788888876


Q ss_pred             ccCCCCCcchHhhcccccEEEEc--cCCHHHHHHHHHHHHhcCCCEEEeccccceeeEE
Q 008516           88 HANVKDPKFNVEFFKQFNVVLNG--LDNLDARRHVNRLCLAADVPLVESGTTGFLGQVT  144 (563)
Q Consensus        88 ~~~i~~~~~~~~~~~~~dvVi~a--lDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~  144 (563)
                      .+.       .+-++++|+||++  ....++|..--+...++|+-  -..|.|..|-..
T Consensus        66 tD~-------~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~~--gqeT~G~GG~~~  115 (425)
T cd05197          66 MDL-------EDAIIDADFVINQFRVGGLTYREKDEQIPLKYGVI--GQETVGPGGTFS  115 (425)
T ss_pred             CCH-------HHHhCCCCEEEEeeecCChHHHHHHHhHHHHcCcc--cccccCcchhhh
Confidence            543       4668999999996  46678888777888898863  366777766443

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>PLN02253 xanthoxin dehydrogenase

Probab=90.73  E-value=0.83  Score=46.21  Aligned_cols=35  Identities=29%  Similarity=0.560  Sum_probs=29.4

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ++.+++++|.| .||||.++++.|+..|. ++.++|.
T Consensus        15 ~l~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~   50 (280)
T PLN02253         15 RLLGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDL   50 (280)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence            46778899998 68999999999999996 5777763

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=90.71  E-value=1.4  Score=46.78  Aligned_cols=91  Identities=18%  Similarity=0.199  Sum_probs=55.6

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc-CCC
Q 008516           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA-NVK   92 (563)
Q Consensus        14 ~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~-~i~   92 (563)
                      +|+|+|+|.||.-.+..+...|.+.|.++|.+.                   .|-+.|++...    .-.+..... ...
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~-------------------~Rl~~A~~~~g----~~~~~~~~~~~~~  227 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP-------------------ERLELAKEAGG----ADVVVNPSEDDAG  227 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH-------------------HHHHHHHHhCC----CeEeecCccccHH
Confidence            799999999999999999999999999987432                   23333333211    000100000 000


Q ss_pred             CCcchHhhc--ccccEEEEccCCHHHHHHHHHHHHhcCC
Q 008516           93 DPKFNVEFF--KQFNVVLNGLDNLDARRHVNRLCLAADV  129 (563)
Q Consensus        93 ~~~~~~~~~--~~~dvVi~alDn~~ar~~in~~c~~~~~  129 (563)
                        ....+.-  ..+|+|+.|+.+..+.....++++..+.
T Consensus       228 --~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~gG~  264 (350)
T COG1063         228 --AEILELTGGRGADVVIEAVGSPPALDQALEALRPGGT  264 (350)
T ss_pred             --HHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhcCCCE
Confidence              0001111  4699999999988766666666655544

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=90.67  E-value=0.84  Score=47.40  Aligned_cols=33  Identities=33%  Similarity=0.523  Sum_probs=28.7

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~   46 (563)
                      .+|.|+|+|.+|+.++..|+..|. +++++|.+.
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~~   34 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLARNGH-DVTLWARDP   34 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCH
Confidence            379999999999999999999997 588887543

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=90.60  E-value=0.9  Score=49.06  Aligned_cols=99  Identities=19%  Similarity=0.268  Sum_probs=61.8

Q ss_pred             cCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           11 KGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        11 ~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      +..||.|+|+ |.+|.|+++.|......+|+.+-.               ....|+.-        ...+|.+.-... .
T Consensus        37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s---------------~~saG~~i--------~~~~~~l~~~~~-~   92 (381)
T PLN02968         37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTA---------------DRKAGQSF--------GSVFPHLITQDL-P   92 (381)
T ss_pred             cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEC---------------hhhcCCCc--------hhhCccccCccc-c
Confidence            4569999996 899999999999886667777532               22233321        111222111000 0


Q ss_pred             CCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccc
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT  137 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~  137 (563)
                      ++.  ..+.+-+++.|+|+.|+.+..++.++..+  ..+.++|+.++.
T Consensus        93 ~~~--~~~~~~~~~~DvVf~Alp~~~s~~i~~~~--~~g~~VIDlSs~  136 (381)
T PLN02968         93 NLV--AVKDADFSDVDAVFCCLPHGTTQEIIKAL--PKDLKIVDLSAD  136 (381)
T ss_pred             cee--cCCHHHhcCCCEEEEcCCHHHHHHHHHHH--hCCCEEEEcCch
Confidence            011  11222248899999999998888888875  467888887654

>PRK06940 short chain dehydrogenase; Provisional

Probab=90.59  E-value=1  Score=45.74  Aligned_cols=31  Identities=29%  Similarity=0.608  Sum_probs=25.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ++.++|.|+||||.++++.|+ .|. ++.++|.
T Consensus         2 ~k~~lItGa~gIG~~la~~l~-~G~-~Vv~~~r   32 (275)
T PRK06940          2 KEVVVVIGAGGIGQAIARRVG-AGK-KVLLADY   32 (275)
T ss_pred             CCEEEEECCChHHHHHHHHHh-CCC-EEEEEeC
Confidence            567889999999999999996 774 6777764

>PRK07478 short chain dehydrogenase; Provisional

Probab=90.58  E-value=1.1  Score=44.43  Aligned_cols=34  Identities=24%  Similarity=0.403  Sum_probs=28.3

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +++++++|.| .||||.++++.|+..|. ++.+++.
T Consensus         4 ~~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r   38 (254)
T PRK07478          4 LNGKVAIITGASSGIGRAAAKLFAREGA-KVVVGAR   38 (254)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence            5677899998 58999999999999998 5777653

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=90.56  E-value=1  Score=50.36  Aligned_cols=162  Identities=12%  Similarity=0.182  Sum_probs=78.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCccc----CccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSN----LNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sN----LnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      -++|.|||+|..|+.++.+|+..|. .++++|.+.=....    +.+.+ =+...-|+...+.+.+.+.++      +..
T Consensus         5 ~~kV~VIGaG~MG~gIA~~la~aG~-~V~l~d~~~e~l~~~~~~i~~~l-~~~~~~G~~~~~~~~~~~~~i------~~~   76 (503)
T TIGR02279         5 VVTVAVIGAGAMGAGIAQVAASAGH-QVLLYDIRAEALARAIAGIEARL-NSLVTKGKLTAEECERTLKRL------IPV   76 (503)
T ss_pred             ccEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHH-HHHHhcCCCCHHHHHHHHhcc------EEe
Confidence            4579999999999999999999997 58888754321111    00000 000111322222222222222      111


Q ss_pred             ccCCCCCcchHhhcccccEEEEcc-CCHHHHHHHHHHHHhc--CCCEEEeccccceee-EEEEeCCCCccccccCC-CCC
Q 008516           88 HANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLAA--DVPLVESGTTGFLGQ-VTVHVKGKTECYECQPK-PAP  162 (563)
Q Consensus        88 ~~~i~~~~~~~~~~~~~dvVi~al-Dn~~ar~~in~~c~~~--~~pli~~gt~G~~G~-v~v~~~~~t~Cy~C~~~-~~~  162 (563)
                           . .  .+-+.++|+||.|+ ++.+.+..+-+.....  .-.++.+.|....-. +.-.......+...+.- |++
T Consensus        77 -----~-~--~~~l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Pap  148 (503)
T TIGR02279        77 -----T-D--LHALADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAP  148 (503)
T ss_pred             -----C-C--HHHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccc
Confidence                 1 1  12257899999986 4455555543322221  123455444432211 00001111112222322 233


Q ss_pred             CCCCceeeccCCCCchhHHHHHHHHHHHH
Q 008516          163 KTYPVCTITSTPSKFVHCIVWAKDLLFAK  191 (563)
Q Consensus       163 ~~~p~cti~~~p~~~~hci~~a~~~lf~~  191 (563)
                      . -+.-.+...+.+....+..+++ +++.
T Consensus       149 v-~~LvEvv~g~~Ts~e~~~~~~~-l~~~  175 (503)
T TIGR02279       149 V-MALVEVVSGLATAAEVAEQLYE-TALA  175 (503)
T ss_pred             c-CceEEEeCCCCCCHHHHHHHHH-HHHH
Confidence            3 2555666666667777887777 4544

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=90.56  E-value=1.2  Score=44.33  Aligned_cols=33  Identities=21%  Similarity=0.479  Sum_probs=27.3

Q ss_pred             CCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           12 GAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        12 ~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +++|+|.|+ |+||.++++.|+..|. ++.++|.+
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r~   35 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADIN   35 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            467999985 7999999999999996 67777743

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=90.46  E-value=0.97  Score=41.61  Aligned_cols=61  Identities=21%  Similarity=0.252  Sum_probs=42.3

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (563)
Q Consensus        13 ~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i   91 (563)
                      +.++|.| .||||-++++.|+..|-.++.+++.+                 ....+.+.+.+.+...  +.++.....++
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~-----------------~~~~~~~~l~~~l~~~--~~~~~~~~~D~   61 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRS-----------------EDSEGAQELIQELKAP--GAKITFIECDL   61 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS-----------------CHHHHHHHHHHHHHHT--TSEEEEEESET
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeec-----------------cccccccccccccccc--ccccccccccc
Confidence            3578887 89999999999999998888887643                 1123444445555533  36777776665


Q ss_pred             C
Q 008516           92 K   92 (563)
Q Consensus        92 ~   92 (563)
                      .
T Consensus        62 ~   62 (167)
T PF00106_consen   62 S   62 (167)
T ss_dssp             T
T ss_pred             c
Confidence            4

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK07814 short chain dehydrogenase; Provisional

Probab=90.42  E-value=1.2  Score=44.65  Aligned_cols=35  Identities=20%  Similarity=0.399  Sum_probs=29.5

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +.+++++|.| .||||.++++.|+..|. ++.++|.+
T Consensus         8 ~~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~   43 (263)
T PRK07814          8 LDDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAART   43 (263)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5678899998 55899999999999998 78887754

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=90.40  E-value=1  Score=44.42  Aligned_cols=33  Identities=33%  Similarity=0.448  Sum_probs=28.7

Q ss_pred             HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEe
Q 008516           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD   43 (563)
                      |++++++|.|+ |+||..+++.|+..|. ++.+++
T Consensus         3 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~   36 (248)
T TIGR01832         3 LEGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAG   36 (248)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEc
Confidence            57789999996 8999999999999997 577765

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=90.37  E-value=0.77  Score=48.53  Aligned_cols=92  Identities=18%  Similarity=0.195  Sum_probs=57.3

Q ss_pred             HHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516            8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus         8 ~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      +.+..++|.|+|+|+||.++++.|...| ..|.-                 ....-..++.  +    .+.+..      
T Consensus       158 ~~~~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y-----------------~~r~~~~~~~--~----~~~~~~------  207 (336)
T KOG0069|consen  158 YDLEGKTVGILGLGRIGKAIAKRLKPFG-CVILY-----------------HSRTQLPPEE--A----YEYYAE------  207 (336)
T ss_pred             ccccCCEEEEecCcHHHHHHHHhhhhcc-ceeee-----------------ecccCCchhh--H----HHhccc------
Confidence            4678899999999999999999999855 33332                 1111111111  1    111111      


Q ss_pred             ccCCCCCcchHhhcccccEEEE-ccCCHHHHHHHHHHHHhc---CCCEEEec
Q 008516           88 HANVKDPKFNVEFFKQFNVVLN-GLDNLDARRHVNRLCLAA---DVPLVESG  135 (563)
Q Consensus        88 ~~~i~~~~~~~~~~~~~dvVi~-alDn~~ar~~in~~c~~~---~~pli~~g  135 (563)
                            ....++++.++|+|+. +-.+.+.+..+|+....+   +.-+|+.+
T Consensus       208 ------~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~a  253 (336)
T KOG0069|consen  208 ------FVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTA  253 (336)
T ss_pred             ------ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEecc
Confidence                  1123678899997655 668899999999875443   33455554

>PRK06181 short chain dehydrogenase; Provisional

Probab=90.37  E-value=1.4  Score=44.00  Aligned_cols=31  Identities=32%  Similarity=0.453  Sum_probs=26.5

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           13 AKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        13 ~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ++|+|.|+ |++|.++++.|+..|. +++++|.
T Consensus         2 ~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r   33 (263)
T PRK06181          2 KVVIITGASEGIGRALAVRLARAGA-QLVLAAR   33 (263)
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            57899986 9999999999999996 7877764

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=90.33  E-value=1.9  Score=44.21  Aligned_cols=80  Identities=18%  Similarity=0.286  Sum_probs=50.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCC---CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGF---QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gv---g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      +.+|.+||+|-+|..+++.|...|.   .+|.+.|.+                   +.+++.+++   ++  ++++  ..
T Consensus         2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~-------------------~~~~~~l~~---~~--g~~~--~~   55 (272)
T PRK12491          2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLN-------------------VSNLKNASD---KY--GITI--TT   55 (272)
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCC-------------------HHHHHHHHH---hc--CcEE--eC
Confidence            5689999999999999999999985   246654421                   123222222   12  2222  11


Q ss_pred             cCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHH
Q 008516           89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLC  124 (563)
Q Consensus        89 ~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c  124 (563)
                             ...+..++.|+||-|+-....+..+.++.
T Consensus        56 -------~~~e~~~~aDiIiLavkP~~~~~vl~~l~   84 (272)
T PRK12491         56 -------NNNEVANSADILILSIKPDLYSSVINQIK   84 (272)
T ss_pred             -------CcHHHHhhCCEEEEEeChHHHHHHHHHHH
Confidence                   12345678999999998666666666654

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=90.26  E-value=2.7  Score=43.69  Aligned_cols=30  Identities=37%  Similarity=0.598  Sum_probs=25.3

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEe
Q 008516           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        13 ~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      ++|+|.| .|.||..+++.|+..|. +++++|
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~   31 (338)
T PRK10675          1 MRVLVTGGSGYIGSHTCVQLLQNGH-DVVILD   31 (338)
T ss_pred             CeEEEECCCChHHHHHHHHHHHCCC-eEEEEe
Confidence            3799999 59999999999999986 466665

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=90.20  E-value=1  Score=46.75  Aligned_cols=34  Identities=24%  Similarity=0.374  Sum_probs=28.0

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +.+++++|.| .||||.++++.|+..|. ++.+++.
T Consensus         4 ~~~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r   38 (322)
T PRK07453          4 DAKGTVIITGASSGVGLYAAKALAKRGW-HVIMACR   38 (322)
T ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEEC
Confidence            3467899998 59999999999999995 6777763

>PRK06138 short chain dehydrogenase; Provisional

Probab=90.02  E-value=1.2  Score=44.00  Aligned_cols=34  Identities=26%  Similarity=0.451  Sum_probs=28.2

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      |++++++|.| .|++|..+++.|+..|. ++.+++.
T Consensus         3 ~~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r   37 (252)
T PRK06138          3 LAGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADR   37 (252)
T ss_pred             CCCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecC
Confidence            5678899998 58999999999999996 5777653

>PRK12939 short chain dehydrogenase; Provisional

Probab=89.98  E-value=1.5  Score=43.14  Aligned_cols=33  Identities=30%  Similarity=0.589  Sum_probs=27.5

Q ss_pred             HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEe
Q 008516           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD   43 (563)
                      +.+++++|.|+ |+||.++++.|+..|. ++.+++
T Consensus         5 ~~~~~vlItGa~g~iG~~la~~l~~~G~-~v~~~~   38 (250)
T PRK12939          5 LAGKRALVTGAARGLGAAFAEALAEAGA-TVAFND   38 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHcCC-EEEEEe
Confidence            56788999995 8999999999999997 466654

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=89.97  E-value=1.5  Score=45.86  Aligned_cols=35  Identities=26%  Similarity=0.303  Sum_probs=29.0

Q ss_pred             HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +.+++|+|.|+ |+||+++++.|+..|. +++++|.+
T Consensus         4 ~~~~~vlVTGatGfiG~~l~~~L~~~G~-~V~~~~r~   39 (340)
T PLN02653          4 PPRKVALITGITGQDGSYLTEFLLSKGY-EVHGIIRR   39 (340)
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEEecc
Confidence            45688999995 8999999999999997 57777643

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=89.93  E-value=1.5  Score=44.24  Aligned_cols=35  Identities=31%  Similarity=0.579  Sum_probs=29.6

Q ss_pred             HHcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .+++++++|.|+ ||||.++++.|+..|. ++.++|.
T Consensus         7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r   42 (278)
T PRK08277          7 SLKGKVAVITGGGGVLGGAMAKELARAGA-KVAILDR   42 (278)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            467788999985 8999999999999998 5777764

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=89.90  E-value=2.2  Score=42.63  Aligned_cols=39  Identities=31%  Similarity=0.502  Sum_probs=31.2

Q ss_pred             CHHHHHHHcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEE
Q 008516            3 SERQLEAIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHII   42 (563)
Q Consensus         3 ~~~~q~kL~~~~VlvvGa-GgiG~ellknLal~Gvg~I~ii   42 (563)
                      .||.-+....++|+|+|+ |++|..+++.|+..|. +++.+
T Consensus         8 ~~~~~~~~~~~~ilItGasG~iG~~l~~~L~~~g~-~V~~~   47 (251)
T PLN00141          8 SEEDAENVKTKTVFVAGATGRTGKRIVEQLLAKGF-AVKAG   47 (251)
T ss_pred             cccccccccCCeEEEECCCcHHHHHHHHHHHhCCC-EEEEE
Confidence            455666777899999995 9999999999999886 35443

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=89.90  E-value=0.44  Score=46.65  Aligned_cols=36  Identities=25%  Similarity=0.519  Sum_probs=31.6

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .|++++|.|+|.|.+|..+++.|...|. +++++|.+
T Consensus        25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~   60 (200)
T cd01075          25 SLEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADIN   60 (200)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            3678899999999999999999999997 67787754

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=89.89  E-value=1.7  Score=46.43  Aligned_cols=33  Identities=24%  Similarity=0.349  Sum_probs=28.4

Q ss_pred             cCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           11 KGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        11 ~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .+++|+|.|+ |-||+.+++.|...|. +++.+|.
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~-~V~~v~r   53 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAEGH-YIIASDW   53 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhCCC-EEEEEEe
Confidence            4678999996 9999999999999985 6888774

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=89.87  E-value=0.69  Score=51.32  Aligned_cols=122  Identities=12%  Similarity=0.226  Sum_probs=67.3

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCch--HHHHHHHHHHhh-CCCceEEEec-
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQS--KAKVARDAVLKF-RPQMSITAHH-   88 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~--Ka~va~~~l~~~-np~v~I~~~~-   88 (563)
                      ++|.|||+|..|..++.||+..|+ ++++.|.+.=....+...-    ..-|..  -+...++.+..+ .|++-+.... 
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~-~V~v~dr~~~~~~~l~~~~----~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~   76 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGF-KISVYNRTYEKTEEFVKKA----KEGNTRVKGYHTLEELVNSLKKPRKVILLIKA   76 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhh----hhcCCcceecCCHHHHHhcCCCCCEEEEEeCC
Confidence            579999999999999999999998 6888886443222221100    000100  122233444433 2443333211 


Q ss_pred             cCCCCCcc--hHhhcccccEEEEccCC-HHHHHHHHHHHHhcCCCEEEeccccc
Q 008516           89 ANVKDPKF--NVEFFKQFNVVLNGLDN-LDARRHVNRLCLAADVPLVESGTTGF  139 (563)
Q Consensus        89 ~~i~~~~~--~~~~~~~~dvVi~alDn-~~ar~~in~~c~~~~~pli~~gt~G~  139 (563)
                      ....+...  -...++.-|+||++... .+.-....+.+...++.++++++.|-
T Consensus        77 ~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG  130 (470)
T PTZ00142         77 GEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGG  130 (470)
T ss_pred             hHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCC
Confidence            11111100  12234556899996543 33333334677788999999998873

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=89.82  E-value=2.3  Score=44.56  Aligned_cols=32  Identities=25%  Similarity=0.464  Sum_probs=26.7

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           13 AKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        13 ~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ++|+|.|+ |.||+.+++.|...|...+.++|.
T Consensus         2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~   34 (355)
T PRK10217          2 RKILITGGAGFIGSALVRYIINETSDAVVVVDK   34 (355)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEec
Confidence            47999985 889999999999999766666663

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=89.82  E-value=1.9  Score=46.47  Aligned_cols=33  Identities=33%  Similarity=0.552  Sum_probs=27.1

Q ss_pred             cCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           11 KGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        11 ~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ...+|+|.|+ |.||..+++.|...|. ++++++.
T Consensus        59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~-~V~~l~R   92 (390)
T PLN02657         59 KDVTVLVVGATGYIGKFVVRELVRRGY-NVVAVAR   92 (390)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEe
Confidence            3568999985 9999999999999996 5666653

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.78  E-value=1.8  Score=47.65  Aligned_cols=40  Identities=30%  Similarity=0.315  Sum_probs=34.1

Q ss_pred             HHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            5 RQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         5 ~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      |...-+.++||+|+|.|+.|..+++.|...|. .+++.|.+
T Consensus         7 ~~~~~~~~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~   46 (458)
T PRK01710          7 EFKKFIKNKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKK   46 (458)
T ss_pred             HHhhhhcCCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCC
Confidence            34456778899999999999999999999997 68888854

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=89.72  E-value=0.41  Score=50.71  Aligned_cols=35  Identities=23%  Similarity=0.329  Sum_probs=32.5

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEe
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      .|.+++|+|||+|-+|..++++|...|+++|+++.
T Consensus       171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~n  205 (338)
T PRK00676        171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCS  205 (338)
T ss_pred             CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEc
Confidence            47889999999999999999999999999999973

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=89.68  E-value=0.99  Score=47.24  Aligned_cols=154  Identities=17%  Similarity=0.253  Sum_probs=81.7

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccC--------cccCccccCCCCCCCCchHHHHHHHHHHhhCCCceE
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIE--------VSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSI   84 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve--------~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I   84 (563)
                      ++|.|||+|-.|+-++..++..|+ .+++.|...=.        ..+|.|+.     .-|+-+.+.+.+.+.++.|... 
T Consensus         4 ~kv~ViGaG~MG~gIA~~~A~~G~-~V~l~D~~~~~~~~~~~~i~~~l~k~~-----~~g~l~~~~~~~~l~~i~~~~~-   76 (307)
T COG1250           4 KKVAVIGAGVMGAGIAAVFALAGY-DVVLKDISPEALERALAYIEKNLEKLV-----EKGKLTEEEADAALARITPTTD-   76 (307)
T ss_pred             cEEEEEcccchhHHHHHHHhhcCC-ceEEEeCCHHHHHHHHHHHHHHHHHHH-----hcCCCChhhHHHHHhhccccCc-
Confidence            589999999999999999999666 68888865111        11233321     1144444444444444443222 


Q ss_pred             EEeccCCCCCcchHhhcccccEEEEcc-CCHHHHHHHHHHHHhcCC--CEEEeccccceeeE-EEEeCCCCccccccCCC
Q 008516           85 TAHHANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLAADV--PLVESGTTGFLGQV-TVHVKGKTECYECQPKP  160 (563)
Q Consensus        85 ~~~~~~i~~~~~~~~~~~~~dvVi~al-Dn~~ar~~in~~c~~~~~--pli~~gt~G~~G~v-~v~~~~~t~Cy~C~~~~  160 (563)
                                   ..-++++|+||-|. -|.+..+.+-+..-..-.  .++.+.|++....- .-......-|..=+.-.
T Consensus        77 -------------~~~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfN  143 (307)
T COG1250          77 -------------LAALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFN  143 (307)
T ss_pred             -------------hhHhccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccC
Confidence                         12478999999975 667766655444333322  36777776543110 00001111122222233


Q ss_pred             CCCCCCceeeccCCCCchhHHHHHHH
Q 008516          161 APKTYPVCTITSTPSKFVHCIVWAKD  186 (563)
Q Consensus       161 ~~~~~p~cti~~~p~~~~hci~~a~~  186 (563)
                      ++.--|.-.+-....+..-++.-+.+
T Consensus       144 P~~~m~LVEvI~g~~T~~e~~~~~~~  169 (307)
T COG1250         144 PVPLMPLVEVIRGEKTSDETVERVVE  169 (307)
T ss_pred             CCCcceeEEEecCCCCCHHHHHHHHH
Confidence            33444554544445555555555554

>PRK06172 short chain dehydrogenase; Provisional

Probab=89.67  E-value=1.2  Score=44.05  Aligned_cols=34  Identities=29%  Similarity=0.446  Sum_probs=28.7

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +.+++++|.| .|+||.++++.|+..|. ++.+++.
T Consensus         5 l~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r   39 (253)
T PRK06172          5 FSGKVALVTGGAAGIGRATALAFAREGA-KVVVADR   39 (253)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence            5678999998 58999999999999996 5777764

>PLN02214 cinnamoyl-CoA reductase

Probab=89.67  E-value=3  Score=43.95  Aligned_cols=107  Identities=17%  Similarity=0.169  Sum_probs=61.5

Q ss_pred             HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      +++++|+|.|+ |.||+.+++.|+..|. +++.++.+.   ++.              +.. ..+.+...  .-+++.+.
T Consensus         8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~-~V~~~~r~~---~~~--------------~~~-~~~~~~~~--~~~~~~~~   66 (342)
T PLN02214          8 PAGKTVCVTGAGGYIASWIVKILLERGY-TVKGTVRNP---DDP--------------KNT-HLRELEGG--KERLILCK   66 (342)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCc---hhh--------------hHH-HHHHhhCC--CCcEEEEe
Confidence            46788999996 9999999999999996 466554321   000              000 01111111  11355556


Q ss_pred             cCCCCCcchHhhcccccEEEEcc----CC--------HHHHHHHHHHHHhcCC-CEEEeccc
Q 008516           89 ANVKDPKFNVEFFKQFNVVLNGL----DN--------LDARRHVNRLCLAADV-PLVESGTT  137 (563)
Q Consensus        89 ~~i~~~~~~~~~~~~~dvVi~al----Dn--------~~ar~~in~~c~~~~~-pli~~gt~  137 (563)
                      .++++...-.+.++++|+||.+.    ++        ...-..+-+.|++.++ .+|..++.
T Consensus        67 ~Dl~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS~  128 (342)
T PLN02214         67 ADLQDYEALKAAIDGCDGVFHTASPVTDDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSSI  128 (342)
T ss_pred             cCcCChHHHHHHHhcCCEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccc
Confidence            66654333345667889888853    11        2222344556677775 47776654

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=89.66  E-value=0.48  Score=50.32  Aligned_cols=59  Identities=19%  Similarity=0.292  Sum_probs=34.6

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHhcCccccc--eeeecccccccccccccCCCCCCCCcccCCC
Q 008516          375 HAVATTNAIIAGLIVIEAIKVLLKDTDKYR--MTYCLEHITKKMLLMPVEPYEPNKSCYVCSE  435 (563)
Q Consensus       375 PAIATTnAiVAGl~vlE~~K~l~~~~~~~r--~~f~~~~~~~~~~~~p~~~~~pn~~C~vC~~  435 (563)
                      +.++++.+++|++++.|++|+|.|..+...  ...+...... ....... .-++|+|++|+.
T Consensus       185 Gvl~p~v~~iaslqa~EalK~L~g~~~~l~~~Ll~~D~~~~~-~~~~~~~-~~k~p~Cp~Cg~  245 (338)
T PRK12475        185 GIIQPAVQIVVAYQVTEALKILVEDFEALRETFLSFDIWNNQ-NMSIKVN-KQKKDTCPSCGL  245 (338)
T ss_pred             CcCchHHHHHHHHHHHHHHHHHhCCCCCCcCeEEEEECCCCe-EEEEEec-cCCCCCCCcCCC
Confidence            445556689999999999999998654332  2222222110 0111111 124799999984

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=89.64  E-value=0.44  Score=52.06  Aligned_cols=35  Identities=37%  Similarity=0.619  Sum_probs=32.3

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +.+.+|+|+|+|++|..+++.|...|+.+++++|.
T Consensus       180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r  214 (423)
T PRK00045        180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANR  214 (423)
T ss_pred             ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeC
Confidence            67899999999999999999999999999999864

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=89.64  E-value=1.9  Score=45.26  Aligned_cols=34  Identities=29%  Similarity=0.622  Sum_probs=30.0

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ...+|+|.|+|++|...+..+..+|..++.++|.
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~  202 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADV  202 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeC
Confidence            4678999999999999999998999988888763

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=89.57  E-value=1.5  Score=43.03  Aligned_cols=35  Identities=26%  Similarity=0.542  Sum_probs=29.8

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +.+.+++|.| .|++|..+++.|+..|. ++.+++.+
T Consensus         5 ~~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~   40 (239)
T PRK07666          5 LQGKNALITGAGRGIGRAVAIALAKEGV-NVGLLART   40 (239)
T ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5677899998 67999999999999998 78888744

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=89.57  E-value=0.43  Score=49.75  Aligned_cols=33  Identities=27%  Similarity=0.406  Sum_probs=29.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ..||+|+|+||+|+.++-.|+++|. .+++++..
T Consensus         2 ~m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~   34 (305)
T PRK05708          2 SMTWHILGAGSLGSLWACRLARAGL-PVRLILRD   34 (305)
T ss_pred             CceEEEECCCHHHHHHHHHHHhCCC-CeEEEEec
Confidence            5689999999999999999999995 68888754

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=89.53  E-value=1.5  Score=43.58  Aligned_cols=34  Identities=35%  Similarity=0.613  Sum_probs=28.9

Q ss_pred             HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +++++++|.|+ |+||..+++.|+..|. ++.+++.
T Consensus         5 ~~~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r   39 (262)
T PRK13394          5 LNGKTAVVTGAASGIGKEIALELARAGA-AVAIADL   39 (262)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeC
Confidence            56788999996 9999999999999998 5777764

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=89.51  E-value=0.49  Score=48.12  Aligned_cols=107  Identities=15%  Similarity=0.252  Sum_probs=63.5

Q ss_pred             HHHcCCcEEEECCcHHHHHHHHHHHHh----CC------CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHh
Q 008516            8 EAIKGAKVLMVGAGGIGCELLKTLALS----GF------QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLK   77 (563)
Q Consensus         8 ~kL~~~~VlvvGaGgiG~ellknLal~----Gv------g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~   77 (563)
                      .+|.+.||+++|+|+-|.-+++.|+..    |+      ++|.++|.+-+=..+        .+|.-..|    +...+.
T Consensus        21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~--------r~~l~~~~----~~~a~~   88 (255)
T PF03949_consen   21 KKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDD--------REDLNPHK----KPFARK   88 (255)
T ss_dssp             S-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTT--------TSSHSHHH----HHHHBS
T ss_pred             CCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEecc--------CccCChhh----hhhhcc
Confidence            368999999999999999999999999    99      899999977542111        11221112    223333


Q ss_pred             hCCCceEEEeccCCCCCcchHhhcccc--cEEEEccC--CHHHHHHHHHHHHhcCCCEEEecc
Q 008516           78 FRPQMSITAHHANVKDPKFNVEFFKQF--NVVLNGLD--NLDARRHVNRLCLAADVPLVESGT  136 (563)
Q Consensus        78 ~np~v~I~~~~~~i~~~~~~~~~~~~~--dvVi~alD--n~~ar~~in~~c~~~~~pli~~gt  136 (563)
                      .+|.-..          ..-.+.+++.  |++|.+..  +.=....+-.|+.....|+|..-+
T Consensus        89 ~~~~~~~----------~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LS  141 (255)
T PF03949_consen   89 TNPEKDW----------GSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLS  141 (255)
T ss_dssp             SSTTT------------SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-S
T ss_pred             Ccccccc----------cCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECC
Confidence            3332111          0123455555  77777542  222466777778777888887654

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>PRK07024 short chain dehydrogenase; Provisional

Probab=89.49  E-value=1.3  Score=44.34  Aligned_cols=33  Identities=27%  Similarity=0.469  Sum_probs=28.0

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        12 ~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .++|+|.| .||||.++++.|+..|. ++.++|.+
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~-~v~~~~r~   35 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGA-TLGLVARR   35 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            45788987 78999999999999997 68887753

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=89.45  E-value=0.96  Score=52.73  Aligned_cols=162  Identities=15%  Similarity=0.199  Sum_probs=89.6

Q ss_pred             CcEEEECCcHHHHHHHHHHH-HhCCCeEEEEeCCccCcccCcccc--C---CC-CCCCCchHHHHHHHHHHhhCCCceEE
Q 008516           13 AKVLMVGAGGIGCELLKTLA-LSGFQDIHIIDMDTIEVSNLNRQF--L---FR-QSHVGQSKAKVARDAVLKFRPQMSIT   85 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLa-l~Gvg~I~iiD~D~Ve~sNLnRqf--L---f~-~~diGk~Ka~va~~~l~~~np~v~I~   85 (563)
                      ++|.|||+|.+|+.++-.++ .+|+ .++++|.+.=   .+.|-.  .   +. ...-|+...+...+.+.      +|+
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~-~V~l~d~~~~---~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------~i~  374 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGI-PVRIKDINPQ---GINNALKYAWKLLDKGVKRRHMTPAERDNQMA------LIT  374 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCC-eEEEEeCCHH---HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHc------CeE
Confidence            47999999999999999998 4897 6899986532   121110  0   00 00001100111111111      122


Q ss_pred             EeccCCCCCcchHhhcccccEEEEcc-CCHHHHHHHHHHHHhcCC--CEEEecccccee-eEEEEeCCCCccccccCCCC
Q 008516           86 AHHANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLAADV--PLVESGTTGFLG-QVTVHVKGKTECYECQPKPA  161 (563)
Q Consensus        86 ~~~~~i~~~~~~~~~~~~~dvVi~al-Dn~~ar~~in~~c~~~~~--pli~~gt~G~~G-~v~v~~~~~t~Cy~C~~~~~  161 (563)
                      ...        +.+-++++|+||.|. .+.+..+.+-+.....-.  .++.+.|.+..= .+.-......-+...+.-.+
T Consensus       375 ~~~--------~~~~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP  446 (699)
T TIGR02440       375 GTT--------DYRGFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSP  446 (699)
T ss_pred             EeC--------ChHHhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCc
Confidence            111        123468999999975 566766665544433322  356666665321 11111122233444455555


Q ss_pred             CCCCCceeeccCCCCchhHHHHHHHHHHHHHhC
Q 008516          162 PKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFG  194 (563)
Q Consensus       162 ~~~~p~cti~~~p~~~~hci~~a~~~lf~~lf~  194 (563)
                      +..-|...|...+.+...++.++.+ +... .|
T Consensus       447 ~~~~~lVEvv~g~~T~~~~~~~~~~-~~~~-~g  477 (699)
T TIGR02440       447 VEKMPLVEVIPHAGTSEQTIATTVA-LAKK-QG  477 (699)
T ss_pred             cccCceEEEeCCCCCCHHHHHHHHH-HHHH-cC
Confidence            6667888888888888999999988 4554 44

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK07680 late competence protein ComER; Validated

Probab=89.34  E-value=1.4  Score=45.04  Aligned_cols=78  Identities=19%  Similarity=0.318  Sum_probs=49.0

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCC---CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           14 KVLMVGAGGIGCELLKTLALSGF---QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        14 ~VlvvGaGgiG~ellknLal~Gv---g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      +|.|||+|.+|..+++.|...|+   ..++++|.+.                   .+++.    +.+..+++++.  .  
T Consensus         2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~-------------------~~~~~----~~~~~~g~~~~--~--   54 (273)
T PRK07680          2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTP-------------------AKAYH----IKERYPGIHVA--K--   54 (273)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCH-------------------HHHHH----HHHHcCCeEEE--C--
Confidence            69999999999999999999985   3566655321                   12222    22222333221  1  


Q ss_pred             CCCCcchHhhcccccEEEEccCCHHHHHHHHHH
Q 008516           91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL  123 (563)
Q Consensus        91 i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~  123 (563)
                           ...+...+.|+||.++-....+..+.++
T Consensus        55 -----~~~~~~~~aDiVilav~p~~~~~vl~~l   82 (273)
T PRK07680         55 -----TIEEVISQSDLIFICVKPLDIYPLLQKL   82 (273)
T ss_pred             -----CHHHHHHhCCEEEEecCHHHHHHHHHHH
Confidence                 1234567899999998655555555554

>PRK12829 short chain dehydrogenase; Provisional

Probab=89.27  E-value=0.96  Score=44.96  Aligned_cols=38  Identities=34%  Similarity=0.669  Sum_probs=31.7

Q ss_pred             HHHHHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            6 QLEAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         6 ~q~kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ....+++++++|.| .|++|..+++.|+..|. ++.+++.
T Consensus         5 ~~~~~~~~~vlItGa~g~iG~~~a~~L~~~g~-~V~~~~r   43 (264)
T PRK12829          5 LLKPLDGLRVLVTGGASGIGRAIAEAFAEAGA-RVHVCDV   43 (264)
T ss_pred             HhhccCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence            34457889999998 59999999999999998 4788763

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=89.25  E-value=0.5  Score=48.95  Aligned_cols=35  Identities=23%  Similarity=0.462  Sum_probs=31.4

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .|.+++|+|+|+|++|..+++.|...|. +++++|.
T Consensus       148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R  182 (287)
T TIGR02853       148 TIHGSNVMVLGFGRTGMTIARTFSALGA-RVFVGAR  182 (287)
T ss_pred             CCCCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeC
Confidence            4678999999999999999999999997 8888764

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=89.24  E-value=1.5  Score=43.23  Aligned_cols=34  Identities=41%  Similarity=0.648  Sum_probs=28.2

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +++++|+|.| .|++|.++++.|+..|. ++.++|.
T Consensus         2 ~~~~~vlItG~sg~iG~~la~~l~~~g~-~v~~~~r   36 (258)
T PRK12429          2 LKGKVALVTGAASGIGLEIALALAKEGA-KVVIADL   36 (258)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeC
Confidence            4567899998 69999999999999987 5666653

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=89.23  E-value=0.88  Score=47.13  Aligned_cols=77  Identities=14%  Similarity=0.345  Sum_probs=55.0

Q ss_pred             HHcCCcEEEECCcH-HHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516            9 AIKGAKVLMVGAGG-IGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus         9 kL~~~~VlvvGaGg-iG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      .|++++|+|||.|. +|..+++.|...|. .+++.+..+                                         
T Consensus       155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~ga-tVtv~~s~t-----------------------------------------  192 (286)
T PRK14175        155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNA-SVTILHSRS-----------------------------------------  192 (286)
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCc-----------------------------------------
Confidence            37899999999999 99999999998885 677776321                                         


Q ss_pred             ccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccc
Q 008516           88 HANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT  137 (563)
Q Consensus        88 ~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~  137 (563)
                       .+      -.+..+++|+||.|+....   .+..--.+.+.-+||.|+.
T Consensus       193 -~~------l~~~~~~ADIVIsAvg~p~---~i~~~~vk~gavVIDvGi~  232 (286)
T PRK14175        193 -KD------MASYLKDADVIVSAVGKPG---LVTKDVVKEGAVIIDVGNT  232 (286)
T ss_pred             -hh------HHHHHhhCCEEEECCCCCc---ccCHHHcCCCcEEEEcCCC
Confidence             00      1355788999999987543   2322224556678888864

>PRK05876 short chain dehydrogenase; Provisional

Probab=89.22  E-value=1.4  Score=44.75  Aligned_cols=35  Identities=29%  Similarity=0.434  Sum_probs=29.0

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +.+++++|.| .||||.++++.|+..|. ++.++|.+
T Consensus         4 ~~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~   39 (275)
T PRK05876          4 FPGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVD   39 (275)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5677899997 78999999999999998 57777633

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=89.19  E-value=2.9  Score=48.36  Aligned_cols=38  Identities=26%  Similarity=0.382  Sum_probs=29.3

Q ss_pred             HHHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         8 ~kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ..-++++|+|.| +|-||+.+++.|...|=-+++.+|..
T Consensus       311 ~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~  349 (660)
T PRK08125        311 SAKRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIG  349 (660)
T ss_pred             hhhcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCC
Confidence            345678899999 59999999999998632367777753

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=89.06  E-value=0.59  Score=53.66  Aligned_cols=88  Identities=17%  Similarity=0.258  Sum_probs=62.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i   91 (563)
                      +.+|+|+|+|.+|..+++.|...|+ +++++|.|.-                   +++.+    ++.  +  ...+.++.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~-------------------~v~~~----~~~--g--~~v~~GDa  451 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPD-------------------HIETL----RKF--G--MKVFYGDA  451 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHH-------------------HHHHH----Hhc--C--CeEEEEeC
Confidence            4689999999999999999999998 5889997752                   22222    221  2  23455555


Q ss_pred             CCCc-chHhhcccccEEEEccCCHHHHHHHHHHHHhc
Q 008516           92 KDPK-FNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA  127 (563)
Q Consensus        92 ~~~~-~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~  127 (563)
                      ++.. ....-.++++.||.++||.+....+-..+++.
T Consensus       452 t~~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~  488 (621)
T PRK03562        452 TRMDLLESAGAAKAEVLINAIDDPQTSLQLVELVKEH  488 (621)
T ss_pred             CCHHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHHHh
Confidence            4321 11233568999999999988888877777765

>PRK07326 short chain dehydrogenase; Provisional

Probab=89.01  E-value=1.5  Score=42.92  Aligned_cols=34  Identities=29%  Similarity=0.595  Sum_probs=27.7

Q ss_pred             HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +.+.+|+|.|+ |++|..+++.|+..|. ++.+++.
T Consensus         4 ~~~~~ilItGatg~iG~~la~~l~~~g~-~V~~~~r   38 (237)
T PRK07326          4 LKGKVALITGGSKGIGFAIAEALLAEGY-KVAITAR   38 (237)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEeeC
Confidence            34678999985 8999999999999987 4777653

>PLN02572 UDP-sulfoquinovose synthase

Probab=88.98  E-value=4  Score=44.83  Aligned_cols=35  Identities=29%  Similarity=0.503  Sum_probs=30.4

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ++++++|+|.| +|.||+.+++.|+..|. +++++|.
T Consensus        44 ~~~~k~VLVTGatGfIGs~Lv~~L~~~G~-~V~~~d~   79 (442)
T PLN02572         44 SSKKKKVMVIGGDGYCGWATALHLSKRGY-EVAIVDN   79 (442)
T ss_pred             cccCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEec
Confidence            56778999998 59999999999999996 6888884

>PRK05872 short chain dehydrogenase; Provisional

Probab=88.91  E-value=1.5  Score=45.01  Aligned_cols=34  Identities=35%  Similarity=0.689  Sum_probs=29.2

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +.+++++|.| .||||.++++.|+..|. ++.+++.
T Consensus         7 l~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r   41 (296)
T PRK05872          7 LAGKVVVVTGAARGIGAELARRLHARGA-KLALVDL   41 (296)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            5678899998 58999999999999997 6777764

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=88.90  E-value=2.4  Score=43.48  Aligned_cols=91  Identities=14%  Similarity=0.237  Sum_probs=55.2

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCC---CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGF---QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gv---g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      ...+|.+||+|.+|..+++.|...|+   .++++.|          |..        ..+++.+++   ..  ++++.  
T Consensus         2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~----------r~~--------~~~~~~l~~---~~--g~~~~--   56 (279)
T PRK07679          2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSN----------RSN--------ETRLQELHQ---KY--GVKGT--   56 (279)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEEC----------CCC--------HHHHHHHHH---hc--CceEe--
Confidence            45689999999999999999999983   2344432          110        112222222   11  23221  


Q ss_pred             ccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHh--cCCCEEE
Q 008516           88 HANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA--ADVPLVE  133 (563)
Q Consensus        88 ~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~--~~~pli~  133 (563)
                      .       ...+..++.|+||.|+-+...+..+..+...  .+..+|+
T Consensus        57 ~-------~~~e~~~~aDvVilav~p~~~~~vl~~l~~~~~~~~liIs   97 (279)
T PRK07679         57 H-------NKKELLTDANILFLAMKPKDVAEALIPFKEYIHNNQLIIS   97 (279)
T ss_pred             C-------CHHHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEE
Confidence            1       1234567899999999888887777766432  3344555

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=88.85  E-value=2.6  Score=46.25  Aligned_cols=104  Identities=16%  Similarity=0.232  Sum_probs=60.6

Q ss_pred             cCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        11 ~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      +.+||+|.| .|-||+.+++.|...|. +++.+|.+...     ++            ... . .+. -++  .++....
T Consensus       119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~-~V~~ldr~~~~-----~~------------~~~-~-~~~-~~~--~~~~~~~  175 (436)
T PLN02166        119 KRLRIVVTGGAGFVGSHLVDKLIGRGD-EVIVIDNFFTG-----RK------------ENL-V-HLF-GNP--RFELIRH  175 (436)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCCCc-----cH------------hHh-h-hhc-cCC--ceEEEEC
Confidence            346899998 68999999999999986 67777743211     00            000 0 000 012  2333333


Q ss_pred             CCCCCcchHhhcccccEEEEccC-----------------CHHHHHHHHHHHHhcCCCEEEeccccceee
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGLD-----------------NLDARRHVNRLCLAADVPLVESGTTGFLGQ  142 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~alD-----------------n~~ar~~in~~c~~~~~pli~~gt~G~~G~  142 (563)
                      ++.+     ..+.++|+||.+..                 |...-..+-+.|..+++.+|..++.+.+|.
T Consensus       176 Di~~-----~~~~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~r~V~~SS~~VYg~  240 (436)
T PLN02166        176 DVVE-----PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTSTSEVYGD  240 (436)
T ss_pred             cccc-----ccccCCCEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECcHHHhCC
Confidence            3322     22457888888431                 111123445667777888998888776653

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=88.85  E-value=2.7  Score=46.88  Aligned_cols=122  Identities=18%  Similarity=0.265  Sum_probs=69.0

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCch---HHHHHHHHHHhh-CCCceEEEec
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQS---KAKVARDAVLKF-RPQMSITAHH   88 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~---Ka~va~~~l~~~-np~v~I~~~~   88 (563)
                      .+|-+||+|..|..+++||+..|+ ++++.|.+.=....+...    ...-|..   -+...++.+..+ .|++-+....
T Consensus         7 ~~IG~IGLG~MG~~mA~nL~~~G~-~V~V~NRt~~k~~~l~~~----~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~   81 (493)
T PLN02350          7 SRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVER----AKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVK   81 (493)
T ss_pred             CCEEEEeeHHHHHHHHHHHHhCCC-eEEEECCCHHHHHHHHHh----hhhcCCcccccCCCHHHHHhcCCCCCEEEEECC
Confidence            479999999999999999999998 688877542211111100    0000211   122233444332 2444444332


Q ss_pred             cCC-CCCcch--HhhcccccEEEEccC-CHHHHHHHHHHHHhcCCCEEEeccccc
Q 008516           89 ANV-KDPKFN--VEFFKQFNVVLNGLD-NLDARRHVNRLCLAADVPLVESGTTGF  139 (563)
Q Consensus        89 ~~i-~~~~~~--~~~~~~~dvVi~alD-n~~ar~~in~~c~~~~~pli~~gt~G~  139 (563)
                      ..- .+..++  ...++.=|+||++.- +++.-+.+.+.+.+.++.+++++..|.
T Consensus        82 ~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG  136 (493)
T PLN02350         82 AGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGG  136 (493)
T ss_pred             CcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCC
Confidence            221 001110  122445688998643 355555557788888999999998874

>PLN02650 dihydroflavonol-4-reductase

Probab=88.81  E-value=4.5  Score=42.52  Aligned_cols=33  Identities=24%  Similarity=0.334  Sum_probs=26.9

Q ss_pred             cCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        11 ~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .+++|+|.| +|.||+.+++.|+..|. ++++++.
T Consensus         4 ~~k~iLVTGatGfIGs~l~~~L~~~G~-~V~~~~r   37 (351)
T PLN02650          4 QKETVCVTGASGFIGSWLVMRLLERGY-TVRATVR   37 (351)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHHHHCCC-EEEEEEc
Confidence            356899998 59999999999999987 5665553

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=88.80  E-value=1  Score=49.97  Aligned_cols=119  Identities=17%  Similarity=0.271  Sum_probs=67.1

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCc--hHHHHHHHHHHhh-CCCceEEEecc-
Q 008516           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQ--SKAKVARDAVLKF-RPQMSITAHHA-   89 (563)
Q Consensus        14 ~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk--~Ka~va~~~l~~~-np~v~I~~~~~-   89 (563)
                      .|.+||+|..|..++.||+..|+ ++++.|.+.-....+..++     ..|+  .-+...++.+..+ .|++-+..... 
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~G~-~V~v~drt~~~~~~l~~~~-----~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~   74 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADHGF-TVSVYNRTPEKTDEFLAEH-----AKGKKIVGAYSIEEFVQSLERPRKIMLMVKAG   74 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHhhc-----cCCCCceecCCHHHHHhhcCCCCEEEEECCCc
Confidence            47899999999999999999998 6888886543332222110     0010  0111223333333 35544444332 


Q ss_pred             CCCCCcc--hHhhcccccEEEEccC-CHH-HHHHHHHHHHhcCCCEEEeccccc
Q 008516           90 NVKDPKF--NVEFFKQFNVVLNGLD-NLD-ARRHVNRLCLAADVPLVESGTTGF  139 (563)
Q Consensus        90 ~i~~~~~--~~~~~~~~dvVi~alD-n~~-ar~~in~~c~~~~~pli~~gt~G~  139 (563)
                      ...+...  -...++.=|+||++.. ++. +++. .+.+...++.++++++.|-
T Consensus        75 ~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~-~~~l~~~gi~fvdapVsGG  127 (467)
T TIGR00873        75 APVDAVINQLLPLLEKGDIIIDGGNSHYPDTERR-YKELKAKGILFVGSGVSGG  127 (467)
T ss_pred             HHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHH-HHHHHhcCCEEEcCCCCCC
Confidence            1111111  0123455689999753 333 3444 4557788999999998873

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=88.73  E-value=1.9  Score=45.89  Aligned_cols=89  Identities=18%  Similarity=0.267  Sum_probs=52.4

Q ss_pred             cEEEECCcHHHHHHHHHHHHhC------C-CeEEEEeCCccCcccCccccCCCCCCC-CchHHHHHHHHHHhh--C----
Q 008516           14 KVLMVGAGGIGCELLKTLALSG------F-QDIHIIDMDTIEVSNLNRQFLFRQSHV-GQSKAKVARDAVLKF--R----   79 (563)
Q Consensus        14 ~VlvvGaGgiG~ellknLal~G------v-g~I~iiD~D~Ve~sNLnRqfLf~~~di-Gk~Ka~va~~~l~~~--n----   79 (563)
                      ||.|+|+|+.|+.++..|+..|      | .++++...+               +++ +..    ..+.+.+-  |    
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~---------------~~~~~~~----~~~~in~~~~n~~yl   61 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFE---------------EEIEGRN----LTEIINTTHENVKYL   61 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEec---------------cccCCHH----HHHHHHhcCCCcccc
Confidence            6899999999999999999988      2 356665431               112 111    12222211  1    


Q ss_pred             CCceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHH
Q 008516           80 PQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLC  124 (563)
Q Consensus        80 p~v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c  124 (563)
                      |+++.   ..++.-.....+.+++.|+|+.++-+...|..+.++.
T Consensus        62 pgi~L---p~~i~at~dl~eal~~ADiIIlAVPs~~i~~vl~~l~  103 (342)
T TIGR03376        62 PGIKL---PANLVAVPDLVEAAKGADILVFVIPHQFLEGICKQLK  103 (342)
T ss_pred             CCCcC---CCCeEEECCHHHHHhcCCEEEEECChHHHHHHHHHHH
Confidence            22211   1111100112456789999999998877777776663

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=88.72  E-value=3.2  Score=42.37  Aligned_cols=88  Identities=18%  Similarity=0.127  Sum_probs=52.0

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhC--CCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSG--FQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~G--vg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      .||.|||+|.+|..+++.|...+  +.-+.++|.+                   ..|++.+++   ...  +.  .+.  
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~-------------------~~~a~~~a~---~~~--~~--~~~--   53 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRN-------------------LEKAENLAS---KTG--AK--ACL--   53 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCC-------------------HHHHHHHHH---hcC--Ce--eEC--
Confidence            48999999999999999998764  3233344432                   223333322   211  11  111  


Q ss_pred             CCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEe
Q 008516           91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVES  134 (563)
Q Consensus        91 i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~  134 (563)
                          . ..+++.+.|+|+.|+... +...+-..+.++++.++..
T Consensus        54 ----~-~~ell~~~DvVvi~a~~~-~~~~~~~~al~~Gk~Vvv~   91 (265)
T PRK13304         54 ----S-IDELVEDVDLVVECASVN-AVEEVVPKSLENGKDVIIM   91 (265)
T ss_pred             ----C-HHHHhcCCCEEEEcCChH-HHHHHHHHHHHcCCCEEEE
Confidence                1 134457899999987643 3333444556678877664

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=88.70  E-value=1.7  Score=45.10  Aligned_cols=31  Identities=32%  Similarity=0.668  Sum_probs=28.2

Q ss_pred             EEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           15 VLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        15 VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      |.|||+|.+|.-++-.|+..|.++++++|.+
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~   31 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIV   31 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCC
Confidence            5799999999999999999887699999976

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=88.70  E-value=4.7  Score=41.45  Aligned_cols=79  Identities=19%  Similarity=0.221  Sum_probs=47.3

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC-CCceEEEecc
Q 008516           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR-PQMSITAHHA   89 (563)
Q Consensus        12 ~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~n-p~v~I~~~~~   89 (563)
                      +++|+|.| +|.||+.+++.|...|. ++++++.+.-..              +  +.    ..+.... ..-+++.+..
T Consensus         4 ~~~ilVtGatGfIG~~l~~~L~~~g~-~V~~~~r~~~~~--------------~--~~----~~~~~~~~~~~~~~~~~~   62 (322)
T PLN02662          4 GKVVCVTGASGYIASWLVKLLLQRGY-TVKATVRDPNDP--------------K--KT----EHLLALDGAKERLHLFKA   62 (322)
T ss_pred             CCEEEEECChHHHHHHHHHHHHHCCC-EEEEEEcCCCch--------------h--hH----HHHHhccCCCCceEEEec
Confidence            57899999 69999999999999987 566655432110              0  00    0111110 0124555666


Q ss_pred             CCCCCcchHhhcccccEEEEcc
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGL  111 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~al  111 (563)
                      ++.+...-...++++|+||.+.
T Consensus        63 Dl~~~~~~~~~~~~~d~Vih~A   84 (322)
T PLN02662         63 NLLEEGSFDSVVDGCEGVFHTA   84 (322)
T ss_pred             cccCcchHHHHHcCCCEEEEeC
Confidence            6654433345677889888853

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=88.63  E-value=0.59  Score=46.45  Aligned_cols=38  Identities=32%  Similarity=0.460  Sum_probs=34.5

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~   46 (563)
                      .|+.++|+|.|.|.+|..+++.|...|...+.+.|.+-
T Consensus        20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g   57 (217)
T cd05211          20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG   57 (217)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence            46789999999999999999999999998999998654

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=88.61  E-value=1.9  Score=45.82  Aligned_cols=98  Identities=24%  Similarity=0.276  Sum_probs=57.9

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCCCeEE-EEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           13 AKVLMVGA-GGIGCELLKTLALSGFQDIH-IIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        13 ~~VlvvGa-GgiG~ellknLal~Gvg~I~-iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      .||.|+|+ |.+|.++++.|...-.-++. +++.+.               ..|+.=        .+..|.+.... ...
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~---------------sagk~~--------~~~~~~l~~~~-~~~   56 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRE---------------SAGKPV--------SEVHPHLRGLV-DLN   56 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccch---------------hcCCCh--------HHhCccccccC-Cce
Confidence            37999998 99999999999966333444 444331               123221        11122211100 001


Q ss_pred             CCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEecc
Q 008516           91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGT  136 (563)
Q Consensus        91 i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt  136 (563)
                      +.+. ...++.++.|+|+.|+.+..++.++.++ ...++.+||.++
T Consensus        57 ~~~~-~~~~~~~~~DvVf~alP~~~s~~~~~~~-~~~G~~VIDlS~  100 (346)
T TIGR01850        57 LEPI-DEEEIAEDADVVFLALPHGVSAELAPEL-LAAGVKVIDLSA  100 (346)
T ss_pred             eecC-CHHHhhcCCCEEEECCCchHHHHHHHHH-HhCCCEEEeCCh
Confidence            1111 1134446899999999998777777665 457888888764

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK12367 short chain dehydrogenase; Provisional

Probab=88.54  E-value=0.9  Score=45.65  Aligned_cols=42  Identities=19%  Similarity=0.317  Sum_probs=35.9

Q ss_pred             CHHHHHHHcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            3 SERQLEAIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         3 ~~~~q~kL~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ..-.|+++++++++|.|+ ||||.++++.|+..|. ++.++|.+
T Consensus         5 ~~~~~~~l~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~   47 (245)
T PRK12367          5 DPMAQSTWQGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHS   47 (245)
T ss_pred             chhhHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            456799999999999985 8999999999999997 67777654

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=88.41  E-value=2.3  Score=43.76  Aligned_cols=32  Identities=28%  Similarity=0.483  Sum_probs=27.3

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .+|.|||+|.+|..++++|+..|. ++.+.|.+
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~-~v~~~d~~   34 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVYDRN   34 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence            479999999999999999999996 46676643

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=88.40  E-value=2.9  Score=43.83  Aligned_cols=32  Identities=25%  Similarity=0.351  Sum_probs=26.3

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           13 AKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        13 ~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ++|+|.|+ |.||+.+++.|...|. +++.+|..
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~-~V~~~~r~   33 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGY-EVHGLIRR   33 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCC-EEEEEecC
Confidence            47899985 8899999999999997 57776643

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=88.37  E-value=0.58  Score=50.32  Aligned_cols=57  Identities=25%  Similarity=0.336  Sum_probs=36.3

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHhcCcccc--ceeeecccccccccccccCCCCCCCCcccCCC
Q 008516          375 HAVATTNAIIAGLIVIEAIKVLLKDTDKY--RMTYCLEHITKKMLLMPVEPYEPNKSCYVCSE  435 (563)
Q Consensus       375 PAIATTnAiVAGl~vlE~~K~l~~~~~~~--r~~f~~~~~~~~~~~~p~~~~~pn~~C~vC~~  435 (563)
                      +.+.+|+++||++++.|++|+|.|..+..  |-..++.....   +... .-+++|.|.+|+.
T Consensus       300 gv~g~~~~~~~~~~a~e~~k~l~g~~~~~~~~~~~~d~~~~~---~~~~-~~~~~~~C~~C~~  358 (376)
T PRK08762        300 GVLGVLPGVIGLLQATEAIKLLLGIGDPLTGRLLTFDALAMR---FREL-RLPPDPHCPVCAP  358 (376)
T ss_pred             CcchhhHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCe---EEEE-eccCCCCCCCCCC
Confidence            35677999999999999999999864332  22222221111   1111 2246899999985

>PRK07035 short chain dehydrogenase; Provisional

Probab=88.26  E-value=2.6  Score=41.74  Aligned_cols=36  Identities=28%  Similarity=0.446  Sum_probs=30.5

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .+++++|+|.| .|+||.++++.|+..|. ++.++|.+
T Consensus         5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~   41 (252)
T PRK07035          5 DLTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRK   41 (252)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            36778899998 78999999999999997 78888753

>PRK12744 short chain dehydrogenase; Provisional

Probab=88.25  E-value=2.1  Score=42.57  Aligned_cols=32  Identities=34%  Similarity=0.572  Sum_probs=26.5

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEE
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHI   41 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~i   41 (563)
                      |++++++|.| .||||.++++.|+..|...+.+
T Consensus         6 l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i   38 (257)
T PRK12744          6 LKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAI   38 (257)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCCcEEEE
Confidence            5678899998 7899999999999999863433

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=88.20  E-value=1.7  Score=49.76  Aligned_cols=89  Identities=12%  Similarity=0.217  Sum_probs=61.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i   91 (563)
                      +.+|+|+|.|.+|..+++.|...|. +++++|.|.-                   +++.    +++.    ....+.++.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~-------------------~v~~----~~~~----g~~v~~GDa  451 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKM-RITVLERDIS-------------------AVNL----MRKY----GYKVYYGDA  451 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHH-------------------HHHH----HHhC----CCeEEEeeC
Confidence            4689999999999999999999998 5899997652                   2222    2221    223455555


Q ss_pred             CCCc-chHhhcccccEEEEccCCHHHHHHHHHHHHhcC
Q 008516           92 KDPK-FNVEFFKQFNVVLNGLDNLDARRHVNRLCLAAD  128 (563)
Q Consensus        92 ~~~~-~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~  128 (563)
                      ++.. ....-.+++|.|+.++||.+.-..+-..+++.+
T Consensus       452 t~~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~  489 (601)
T PRK03659        452 TQLELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHF  489 (601)
T ss_pred             CCHHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHC
Confidence            4321 122336789999999999888777777777653

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=88.17  E-value=0.66  Score=47.66  Aligned_cols=32  Identities=31%  Similarity=0.541  Sum_probs=28.3

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .+|+|+|+|++|+.++..|+..|. +++++|.+
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~   32 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQAGH-DVTLVARR   32 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            379999999999999999999994 78998853

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=88.13  E-value=2  Score=45.11  Aligned_cols=35  Identities=40%  Similarity=0.491  Sum_probs=31.2

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ..++|||.|||.||--.....-.+|.++|.++|..
T Consensus       169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~  203 (354)
T KOG0024|consen  169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLV  203 (354)
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecC
Confidence            36799999999999999999999999999999843

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=88.11  E-value=2.2  Score=45.31  Aligned_cols=92  Identities=14%  Similarity=0.188  Sum_probs=59.6

Q ss_pred             cCCcEEEECC-cHHHHHHHHHHHH--hCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516           11 KGAKVLMVGA-GGIGCELLKTLAL--SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus        11 ~~~~VlvvGa-GgiG~ellknLal--~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      ++.+|.|||+ |-+|.|+++.|..  ..+.+|..+-.+               +..|+.=.      +.  ..++.++  
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~---------------~saG~~~~------~~--~~~~~v~--   57 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASE---------------ESAGETLR------FG--GKSVTVQ--   57 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEcc---------------CcCCceEE------EC--CcceEEE--
Confidence            4678999996 8899999999998  456666665322               23333211      00  1123333  


Q ss_pred             ccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEec
Q 008516           88 HANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG  135 (563)
Q Consensus        88 ~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~g  135 (563)
                        .+     +..-|+++|+|+.|+.+-.++.+..+. ...+.++||-+
T Consensus        58 --~~-----~~~~~~~~Dvvf~a~p~~~s~~~~~~~-~~~g~~VIDlS   97 (336)
T PRK08040         58 --DA-----AEFDWSQAQLAFFVAGREASAAYAEEA-TNAGCLVIDSS   97 (336)
T ss_pred             --eC-----chhhccCCCEEEECCCHHHHHHHHHHH-HHCCCEEEECC
Confidence              12     112347899999999987777776665 56788899865

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=88.09  E-value=1.2  Score=46.18  Aligned_cols=31  Identities=23%  Similarity=0.460  Sum_probs=27.4

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        14 ~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +|.+||+|.+|..++++|+..|. .+++.|.+
T Consensus         2 ~Ig~IGlG~mG~~mA~~L~~~g~-~v~v~dr~   32 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERLREDGH-EVVGYDVN   32 (299)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCC-EEEEEECC
Confidence            69999999999999999999996 57787754

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=88.07  E-value=2  Score=36.74  Aligned_cols=92  Identities=22%  Similarity=0.382  Sum_probs=54.7

Q ss_pred             cCCcEEEECCcHHHHHHHH-HHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           11 KGAKVLMVGAGGIGCELLK-TLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellk-nLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      ++.+|+|+|+|++|..++. .+...|++-..+.|.|.              +.+|+.-           . ++.|-.   
T Consensus         2 k~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~--------------~~~G~~i-----------~-gipV~~---   52 (96)
T PF02629_consen    2 KKTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDP--------------EKIGKEI-----------G-GIPVYG---   52 (96)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECT--------------TTTTSEE-----------T-TEEEES---
T ss_pred             CCCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCC--------------CccCcEE-----------C-CEEeec---
Confidence            3568999999999998864 44577888888888332              2333211           0 222221   


Q ss_pred             CCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEecc
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGT  136 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt  136 (563)
                      .+.   .-.++. +.|+.+.++....++..+.+++. .++..|..-+
T Consensus        53 ~~~---~l~~~~-~i~iaii~VP~~~a~~~~~~~~~-~gIk~i~nft   94 (96)
T PF02629_consen   53 SMD---ELEEFI-EIDIAIITVPAEAAQEVADELVE-AGIKGIVNFT   94 (96)
T ss_dssp             SHH---HHHHHC-TTSEEEEES-HHHHHHHHHHHHH-TT-SEEEEES
T ss_pred             cHH---Hhhhhh-CCCEEEEEcCHHHHHHHHHHHHH-cCCCEEEEeC
Confidence            110   112333 48999999877677776666654 7777665543

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=88.06  E-value=1.2  Score=46.87  Aligned_cols=31  Identities=35%  Similarity=0.602  Sum_probs=27.6

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCC-C-----eEEEEe
Q 008516           13 AKVLMVGA-GGIGCELLKTLALSGF-Q-----DIHIID   43 (563)
Q Consensus        13 ~~VlvvGa-GgiG~ellknLal~Gv-g-----~I~iiD   43 (563)
                      .||.|||+ |.+|+.++-.|+..|+ +     +|.|+|
T Consensus         4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~D   41 (323)
T TIGR01759         4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLD   41 (323)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEe
Confidence            48999998 9999999999999987 4     688887

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=88.06  E-value=1.2  Score=46.79  Aligned_cols=33  Identities=36%  Similarity=0.581  Sum_probs=29.4

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCC-CeEEEEeCC
Q 008516           13 AKVLMVGA-GGIGCELLKTLALSGF-QDIHIIDMD   45 (563)
Q Consensus        13 ~~VlvvGa-GgiG~ellknLal~Gv-g~I~iiD~D   45 (563)
                      .||.|||+ |.+|+.++-.|+..|+ .+|.|+|-.
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~   35 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV   35 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC
Confidence            38999999 9999999999999997 579999954

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06949 short chain dehydrogenase; Provisional

Probab=88.02  E-value=2.3  Score=42.16  Aligned_cols=34  Identities=26%  Similarity=0.544  Sum_probs=28.8

Q ss_pred             HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +.+++|+|.|+ |+||..+++.|+..|. ++++++.
T Consensus         7 ~~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r   41 (258)
T PRK06949          7 LEGKVALVTGASSGLGARFAQVLAQAGA-KVVLASR   41 (258)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            56789999985 9999999999999998 5777654

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=88.00  E-value=1.9  Score=44.56  Aligned_cols=34  Identities=24%  Similarity=0.238  Sum_probs=29.1

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +..+|+|+|+|++|...+..+..+|...+.++|.
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~  177 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWET  177 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence            4568999999999999998888899988877753

>PRK06196 oxidoreductase; Provisional

Probab=87.98  E-value=1.7  Score=44.98  Aligned_cols=36  Identities=22%  Similarity=0.458  Sum_probs=29.4

Q ss_pred             HHcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         9 kL~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .+.+++|+|.|+ ||||.++++.|+..|. ++.+++.+
T Consensus        23 ~l~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R~   59 (315)
T PRK06196         23 DLSGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPARR   59 (315)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            356778999985 8999999999999997 57777643

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=87.97  E-value=1.4  Score=51.59  Aligned_cols=162  Identities=13%  Similarity=0.099  Sum_probs=87.5

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCccc----CccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSN----LNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sN----LnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      .+|.|||+|.+|+.++-.++..|+ .++++|.+.=....    +.+. +=..-.-|+...+.+.+.+.++.      ...
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~i~------~~~  385 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQHSLDLGLTEAAKL-LNKQVERGRITPAKMAGVLNGIT------PTL  385 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHH-HHHHHHcCCCChhhHHHHHhCeE------EeC
Confidence            469999999999999999999998 68999865432211    1110 00000112222222222222221      111


Q ss_pred             cCCCCCcchHhhcccccEEEEcc-CCHHHHHHHHHHHHhcCC--CEEEecccccee-eEEEEeCCCCccccccCCCCCCC
Q 008516           89 ANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLAADV--PLVESGTTGFLG-QVTVHVKGKTECYECQPKPAPKT  164 (563)
Q Consensus        89 ~~i~~~~~~~~~~~~~dvVi~al-Dn~~ar~~in~~c~~~~~--pli~~gt~G~~G-~v~v~~~~~t~Cy~C~~~~~~~~  164 (563)
                              +.+-++++|+||.|. .+.+..+.+-+..-..-.  .++.+.|.+..- .+.-..+...-+..-+.-.++..
T Consensus       386 --------~~~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~  457 (714)
T TIGR02437       386 --------SYAGFDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHR  457 (714)
T ss_pred             --------CHHHhcCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCccc
Confidence                    123368999999985 566666665444433322  356666655321 00001111222333333344455


Q ss_pred             CCceeeccCCCCchhHHHHHHHHHHHH
Q 008516          165 YPVCTITSTPSKFVHCIVWAKDLLFAK  191 (563)
Q Consensus       165 ~p~cti~~~p~~~~hci~~a~~~lf~~  191 (563)
                      -|.-.|...+.+...++..+.+ +...
T Consensus       458 ~~lvEvv~g~~Ts~~~~~~~~~-~~~~  483 (714)
T TIGR02437       458 MPLVEVIRGEKSSDETIATVVA-YASK  483 (714)
T ss_pred             CceEeecCCCCCCHHHHHHHHH-HHHH
Confidence            6777777777788888888887 3443

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=87.92  E-value=2.3  Score=43.73  Aligned_cols=91  Identities=16%  Similarity=0.122  Sum_probs=53.3

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHh--CCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALS--GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~--Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      +...||.|||+|.+|..++++|...  |+.-..+.|.+                   ..|++.+++   +.+ ....   
T Consensus         4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~-------------------~~~a~~~a~---~~g-~~~~---   57 (271)
T PRK13302          4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRD-------------------PQRHADFIW---GLR-RPPP---   57 (271)
T ss_pred             CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCC-------------------HHHHHHHHH---hcC-CCcc---
Confidence            3457899999999999999999864  43222233321                   123333222   221 0000   


Q ss_pred             ccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEE
Q 008516           88 HANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVE  133 (563)
Q Consensus        88 ~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~  133 (563)
                         .+  . .++++.+.|+|+.++.+...+ .+...+.+++++++.
T Consensus        58 ---~~--~-~eell~~~D~Vvi~tp~~~h~-e~~~~aL~aGk~Vi~   96 (271)
T PRK13302         58 ---VV--P-LDQLATHADIVVEAAPASVLR-AIVEPVLAAGKKAIV   96 (271)
T ss_pred             ---cC--C-HHHHhcCCCEEEECCCcHHHH-HHHHHHHHcCCcEEE
Confidence               01  1 234567789999998765444 444666778888764

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=87.90  E-value=2.5  Score=43.73  Aligned_cols=86  Identities=23%  Similarity=0.329  Sum_probs=58.0

Q ss_pred             HHHHHHcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCce
Q 008516            5 RQLEAIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMS   83 (563)
Q Consensus         5 ~~q~kL~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~   83 (563)
                      ...++++++.|+|-|| .|||-++|+.|+..|..-+.++=               +     ..+-+..++.+++.-|.-+
T Consensus         5 ~~~e~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar---------------~-----~rrl~~v~~~l~~~~~~~~   64 (282)
T KOG1205|consen    5 LFMERLAGKVVLITGASSGIGEALAYELAKRGAKLVLVAR---------------R-----ARRLERVAEELRKLGSLEK   64 (282)
T ss_pred             ccHHHhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeeh---------------h-----hhhHHHHHHHHHHhCCcCc
Confidence            4567899999999995 79999999999999997555430               1     1223444455554444337


Q ss_pred             EEEeccCCCCCcchH-------hhcccccEEEEc
Q 008516           84 ITAHHANVKDPKFNV-------EFFKQFNVVLNG  110 (563)
Q Consensus        84 I~~~~~~i~~~~~~~-------~~~~~~dvVi~a  110 (563)
                      +..+..++++...-.       .-|.+.|++||.
T Consensus        65 v~~~~~Dvs~~~~~~~~~~~~~~~fg~vDvLVNN   98 (282)
T KOG1205|consen   65 VLVLQLDVSDEESVKKFVEWAIRHFGRVDVLVNN   98 (282)
T ss_pred             cEEEeCccCCHHHHHHHHHHHHHhcCCCCEEEec
Confidence            888888886543333       235677888873

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=87.89  E-value=0.49  Score=48.08  Aligned_cols=107  Identities=12%  Similarity=0.121  Sum_probs=64.6

Q ss_pred             HHHcCCcEEEECCcHHHHHHHHHHHHhCCC----------eEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHh
Q 008516            8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQ----------DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLK   77 (563)
Q Consensus         8 ~kL~~~~VlvvGaGgiG~ellknLal~Gvg----------~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~   77 (563)
                      .+|.+.||+++|+|+-|.-+++.|...|+.          +|.++|..-+=..+-        .+.-..|... ++..  
T Consensus        21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r--------~~l~~~~~~~-~~~~--   89 (254)
T cd00762          21 KKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNR--------KETCPNEYHL-ARFA--   89 (254)
T ss_pred             CChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCC--------CccCHHHHHH-HHHc--
Confidence            368899999999999999999999999987          899999775422111        1122222221 1111  


Q ss_pred             hCCCceEEEeccCCCCCcchHhhcc--cccEEEEccC--CHHHHHHHHHHHHhcCCCEEEecc
Q 008516           78 FRPQMSITAHHANVKDPKFNVEFFK--QFNVVLNGLD--NLDARRHVNRLCLAADVPLVESGT  136 (563)
Q Consensus        78 ~np~v~I~~~~~~i~~~~~~~~~~~--~~dvVi~alD--n~~ar~~in~~c~~~~~pli~~gt  136 (563)
                       |+.-.    ..      .-.+.++  +.|++|-...  +.=.+..+..|+.....|+|.+-+
T Consensus        90 -~~~~~----~~------~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLS  141 (254)
T cd00762          90 -NPERE----SG------DLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALS  141 (254)
T ss_pred             -Ccccc----cC------CHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECC
Confidence             11100    00      1134455  6677766432  223456677777777788887654

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=87.85  E-value=1.9  Score=45.57  Aligned_cols=89  Identities=20%  Similarity=0.264  Sum_probs=57.0

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCC-eEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQ-DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg-~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      .+.++++.|+|.|.||..+++.+.  ||| +|...|...-                  ++.+.      ..+    ... 
T Consensus       143 ~l~gktvGIiG~GrIG~avA~r~~--~Fgm~v~y~~~~~~------------------~~~~~------~~~----~~y-  191 (324)
T COG1052         143 DLRGKTLGIIGLGRIGQAVARRLK--GFGMKVLYYDRSPN------------------PEAEK------ELG----ARY-  191 (324)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHh--cCCCEEEEECCCCC------------------hHHHh------hcC----cee-
Confidence            478999999999999999999999  776 4444432110                  11110      000    000 


Q ss_pred             ccCCCCCcchHhhcccccEEEE-ccCCHHHHHHHHHHHHhcCC---CEEEec
Q 008516           88 HANVKDPKFNVEFFKQFNVVLN-GLDNLDARRHVNRLCLAADV---PLVESG  135 (563)
Q Consensus        88 ~~~i~~~~~~~~~~~~~dvVi~-alDn~~ar~~in~~c~~~~~---pli~~g  135 (563)
                         +   . -++.+++.|+|+. +-.+.+.+..||+.-.+.-+   -+|+.+
T Consensus       192 ---~---~-l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNta  236 (324)
T COG1052         192 ---V---D-LDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTA  236 (324)
T ss_pred             ---c---c-HHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECC
Confidence               1   1 3678899998866 55778889999887665433   355554

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=87.83  E-value=2.7  Score=44.51  Aligned_cols=91  Identities=18%  Similarity=0.212  Sum_probs=51.2

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK   92 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~   92 (563)
                      .||.|+|+|++|+.++..|+..|  +++++..+.-....+++.- .+....+..         .++.+.  +.+     +
T Consensus         8 mkI~IiGaGa~G~alA~~La~~g--~v~l~~~~~~~~~~i~~~~-~~~~~l~~~---------~~l~~~--i~~-----t   68 (341)
T PRK12439          8 PKVVVLGGGSWGTTVASICARRG--PTLQWVRSAETADDINDNH-RNSRYLGND---------VVLSDT--LRA-----T   68 (341)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCC--CEEEEeCCHHHHHHHHhcC-CCcccCCCC---------cccCCC--eEE-----E
Confidence            68999999999999999999998  4555543332221122110 000111100         001111  111     1


Q ss_pred             CCcchHhhcccccEEEEccCCHHHHHHHHHHH
Q 008516           93 DPKFNVEFFKQFNVVLNGLDNLDARRHVNRLC  124 (563)
Q Consensus        93 ~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c  124 (563)
                      . . ..+.++++|+|+.++-....+..+.++.
T Consensus        69 ~-d-~~~a~~~aDlVilavps~~~~~vl~~i~   98 (341)
T PRK12439         69 T-D-FAEAANCADVVVMGVPSHGFRGVLTELA   98 (341)
T ss_pred             C-C-HHHHHhcCCEEEEEeCHHHHHHHHHHHH
Confidence            1 1 1244688999999998777777777664

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=87.80  E-value=1.7  Score=46.79  Aligned_cols=32  Identities=38%  Similarity=0.727  Sum_probs=28.5

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        13 ~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .+|.||| +|.+|..+++.|...|. .++++|.+
T Consensus        99 ~~I~IiGG~GlmG~slA~~l~~~G~-~V~~~d~~  131 (374)
T PRK11199         99 RPVVIVGGKGQLGRLFAKMLTLSGY-QVRILEQD  131 (374)
T ss_pred             ceEEEEcCCChhhHHHHHHHHHCCC-eEEEeCCC
Confidence            6799998 99999999999999995 58888864

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=87.79  E-value=5  Score=42.22  Aligned_cols=32  Identities=28%  Similarity=0.401  Sum_probs=26.6

Q ss_pred             cCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEe
Q 008516           11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        11 ~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      ++++|+|.| +|.||+.+++.|+..|. ++++++
T Consensus         9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~-~V~~~~   41 (353)
T PLN02896          9 ATGTYCVTGATGYIGSWLVKLLLQRGY-TVHATL   41 (353)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEe
Confidence            467899999 58999999999999996 455554

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=87.75  E-value=3.5  Score=45.30  Aligned_cols=34  Identities=26%  Similarity=0.406  Sum_probs=30.4

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ...+|+|||+|..|.+.+..|++.|. +++|+|..
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~~G~-~V~vie~~  165 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAKAGH-SVTVFEAL  165 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEecC
Confidence            45689999999999999999999997 69999864

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=87.67  E-value=2.4  Score=43.82  Aligned_cols=36  Identities=25%  Similarity=0.378  Sum_probs=29.6

Q ss_pred             HHHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         8 ~kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ..+++++++|.| .||||.++++.|+..|. ++.++|.
T Consensus         8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~   44 (306)
T PRK07792          8 TDLSGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDV   44 (306)
T ss_pred             cCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecC
Confidence            457788999998 57999999999999997 5666653

>PRK06545 prephenate dehydrogenase; Validated

Probab=87.63  E-value=3.1  Score=44.44  Aligned_cols=93  Identities=24%  Similarity=0.300  Sum_probs=54.9

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK   92 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~   92 (563)
                      .+|.|||+|.+|..+++.|...|. .++++|.|.-                   +...+. . ...    .+.  . ...
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~-~v~i~~~~~~-------------------~~~~~~-a-~~~----~~~--~-~~~   51 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGP-DVFIIGYDPS-------------------AAQLAR-A-LGF----GVI--D-ELA   51 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCC-CeEEEEeCCC-------------------HHHHHH-H-hcC----CCC--c-ccc
Confidence            379999999999999999999997 5677764321                   111111 0 000    100  0 011


Q ss_pred             CCcchHhhcccccEEEEccCCHHHHHHHHHHHH---hcCCCEEEecc
Q 008516           93 DPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL---AADVPLVESGT  136 (563)
Q Consensus        93 ~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~---~~~~pli~~gt  136 (563)
                      .  ...+..+++|+||.|+-....+..+.++..   ..+..+.+.++
T Consensus        52 ~--~~~~~~~~aDlVilavP~~~~~~vl~~l~~~~l~~~~ivtDv~S   96 (359)
T PRK06545         52 A--DLQRAAAEADLIVLAVPVDATAALLAELADLELKPGVIVTDVGS   96 (359)
T ss_pred             c--CHHHHhcCCCEEEEeCCHHHHHHHHHHHhhcCCCCCcEEEeCcc
Confidence            0  123457889999999877666666666652   22344445543

>PRK08265 short chain dehydrogenase; Provisional

Probab=87.51  E-value=1.8  Score=43.42  Aligned_cols=35  Identities=26%  Similarity=0.546  Sum_probs=30.0

Q ss_pred             HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +++++++|.|+ ||||.++++.|+..|. ++.++|.+
T Consensus         4 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~   39 (261)
T PRK08265          4 LAGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDID   39 (261)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            56789999985 9999999999999997 78887643

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=87.48  E-value=2.8  Score=43.32  Aligned_cols=80  Identities=18%  Similarity=0.165  Sum_probs=46.2

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        12 ~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      +++|+|.| +|+||+.+++.|+..|. ++.+++.|.-..                   ..............+++.+..+
T Consensus         5 ~k~vlVtG~~G~IG~~l~~~L~~~G~-~V~~~~r~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~D   64 (325)
T PLN02989          5 GKVVCVTGASGYIASWIVKLLLFRGY-TINATVRDPKDR-------------------KKTDHLLALDGAKERLKLFKAD   64 (325)
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCC-EEEEEEcCCcch-------------------hhHHHHHhccCCCCceEEEeCC
Confidence            46899998 59999999999999997 465554332110                   0001111000011245556666


Q ss_pred             CCCCcchHhhcccccEEEEcc
Q 008516           91 VKDPKFNVEFFKQFNVVLNGL  111 (563)
Q Consensus        91 i~~~~~~~~~~~~~dvVi~al  111 (563)
                      +++...-.+++++.|+||.+.
T Consensus        65 ~~d~~~~~~~~~~~d~vih~A   85 (325)
T PLN02989         65 LLDEGSFELAIDGCETVFHTA   85 (325)
T ss_pred             CCCchHHHHHHcCCCEEEEeC
Confidence            655433345677788888753

>PRK06125 short chain dehydrogenase; Provisional

Probab=87.44  E-value=2.6  Score=42.05  Aligned_cols=34  Identities=32%  Similarity=0.672  Sum_probs=29.5

Q ss_pred             HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +.+++++|.|+ ||+|.++++.|+..|. ++.++|.
T Consensus         5 ~~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r   39 (259)
T PRK06125          5 LAGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVAR   39 (259)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence            56788999996 7999999999999998 7888764

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=87.40  E-value=3  Score=42.78  Aligned_cols=81  Identities=12%  Similarity=0.194  Sum_probs=50.4

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCC---CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGF---QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gv---g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      .+|.|||+|.+|..+++.|...|.   .++.++|.+.                  ..|.+.    +....+.+.+.    
T Consensus         2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~------------------~~~~~~----l~~~~~~~~~~----   55 (277)
T PRK06928          2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSK------------------NEHFNQ----LYDKYPTVELA----   55 (277)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCc------------------HHHHHH----HHHHcCCeEEe----
Confidence            369999999999999999999983   4577665421                  011111    12222222211    


Q ss_pred             CCCCCcchHhhcccccEEEEccCCHHHHHHHHHHH
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLC  124 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c  124 (563)
                         .  ...+..+++|+||.|+-....+..+.++.
T Consensus        56 ---~--~~~e~~~~aDvVilavpp~~~~~vl~~l~   85 (277)
T PRK06928         56 ---D--NEAEIFTKCDHSFICVPPLAVLPLLKDCA   85 (277)
T ss_pred             ---C--CHHHHHhhCCEEEEecCHHHHHHHHHHHH
Confidence               1  12345678999999988666666666553

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=87.36  E-value=2.7  Score=41.84  Aligned_cols=37  Identities=22%  Similarity=0.433  Sum_probs=31.0

Q ss_pred             HHHHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            7 LEAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         7 q~kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ..++.+++++|.| .|+||..+++.|+..|. ++.++|.
T Consensus         7 ~~~~~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r   44 (259)
T PRK08213          7 LFDLSGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSAR   44 (259)
T ss_pred             hhCcCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence            3457789999998 69999999999999997 5777663

>PRK05855 short chain dehydrogenase; Validated

Probab=87.35  E-value=1.4  Score=49.05  Aligned_cols=36  Identities=31%  Similarity=0.460  Sum_probs=30.1

Q ss_pred             HHHcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            8 EAIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         8 ~kL~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ..+++.+++|+|+ ||||.++++.|+..|.. +.+++.
T Consensus       311 ~~~~~~~~lv~G~s~giG~~~a~~l~~~G~~-v~~~~r  347 (582)
T PRK05855        311 GPFSGKLVVVTGAGSGIGRETALAFAREGAE-VVASDI  347 (582)
T ss_pred             ccCCCCEEEEECCcCHHHHHHHHHHHHCCCE-EEEEeC
Confidence            4567788999985 99999999999999985 777663

>PRK07074 short chain dehydrogenase; Provisional

Probab=87.34  E-value=2.4  Score=42.14  Aligned_cols=33  Identities=33%  Similarity=0.580  Sum_probs=27.6

Q ss_pred             CCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           12 GAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        12 ~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +++++|.|+ |+||.++++.|+..|. ++.++|.+
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~-~v~~~~r~   35 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGD-RVLALDID   35 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            467999996 8999999999999996 68887643

>PRK07774 short chain dehydrogenase; Provisional

Probab=87.33  E-value=2.8  Score=41.26  Aligned_cols=34  Identities=29%  Similarity=0.538  Sum_probs=28.8

Q ss_pred             HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +++++++|.|+ |++|..+++.|+..|. ++.++|.
T Consensus         4 ~~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r   38 (250)
T PRK07774          4 FDDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADI   38 (250)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            56788999996 9999999999999996 5777663

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=87.33  E-value=0.76  Score=50.27  Aligned_cols=34  Identities=29%  Similarity=0.373  Sum_probs=30.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~   46 (563)
                      ..+|+|||+|-+||++|-.|++.|+ +++|+|+..
T Consensus         2 ~~dVvVIGGGlAGleAAlaLAr~Gl-~V~LiE~rp   35 (436)
T PRK05335          2 MKPVNVIGAGLAGSEAAWQLAKRGV-PVELYEMRP   35 (436)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC-cEEEEEccC
Confidence            4689999999999999999999997 589998644

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=87.31  E-value=3.1  Score=48.12  Aligned_cols=34  Identities=26%  Similarity=0.458  Sum_probs=30.5

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .+.+|+|||+|..|-..+..|++.|.. ++|+|.+
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~-V~V~E~~  359 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVA-VTVYDRH  359 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEecC
Confidence            467999999999999999999999984 9999864

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=87.30  E-value=2.2  Score=42.38  Aligned_cols=36  Identities=28%  Similarity=0.515  Sum_probs=30.5

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ++.+++++|.| .|+||..+++.|+..|. ++.++|.+
T Consensus         8 ~~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~   44 (256)
T PRK06124          8 SLAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRN   44 (256)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCC
Confidence            36788999998 58999999999999997 68887754

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=87.29  E-value=2.6  Score=43.31  Aligned_cols=31  Identities=29%  Similarity=0.582  Sum_probs=26.8

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        14 ~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +|.|||+|.+|..++++|+..|. +++++|.+
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~   31 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIG   31 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCC
Confidence            58999999999999999999996 67777643

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK12827 short chain dehydrogenase; Provisional

Probab=87.25  E-value=3.1  Score=40.71  Aligned_cols=33  Identities=33%  Similarity=0.704  Sum_probs=28.2

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEe
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      +++++++|.| .|+||.++++.|+..|. ++++++
T Consensus         4 ~~~~~ilItGasg~iG~~la~~l~~~g~-~v~~~~   37 (249)
T PRK12827          4 LDSRRVLITGGSGGLGRAIAVRLAADGA-DVIVLD   37 (249)
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEc
Confidence            4678899998 69999999999999997 467766

>PRK07102 short chain dehydrogenase; Provisional

Probab=87.25  E-value=3  Score=41.04  Aligned_cols=32  Identities=22%  Similarity=0.386  Sum_probs=26.7

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        13 ~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ++++|.| .||||.++++.|+..|. +++++|.+
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~-~Vi~~~r~   34 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGA-RLYLAARD   34 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCC
Confidence            4788998 69999999999999996 57777643

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=87.22  E-value=0.79  Score=47.83  Aligned_cols=34  Identities=29%  Similarity=0.502  Sum_probs=29.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~   46 (563)
                      +.+|+|+|+|++|+.++..|+..|. .++++..+.
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~   38 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSD   38 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCC
Confidence            4689999999999999999999994 688876543

>PRK07109 short chain dehydrogenase; Provisional

Probab=87.20  E-value=2.4  Score=44.61  Aligned_cols=35  Identities=23%  Similarity=0.419  Sum_probs=29.1

Q ss_pred             HHcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .+.+++|+|.|+ ||||.++++.|+..|. ++.+++.
T Consensus         5 ~l~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R   40 (334)
T PRK07109          5 PIGRQVVVITGASAGVGRATARAFARRGA-KVVLLAR   40 (334)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            356788999985 9999999999999997 6777763

>PLN02780 ketoreductase/ oxidoreductase

Probab=87.19  E-value=3.5  Score=43.18  Aligned_cols=62  Identities=21%  Similarity=0.312  Sum_probs=43.2

Q ss_pred             cCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        11 ~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      .++.++|.| .||||.++++.|+..|. ++.+++.+                   ..|.+.+++.+++..+..++..+..
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~-------------------~~~l~~~~~~l~~~~~~~~~~~~~~  111 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARN-------------------PDKLKDVSDSIQSKYSKTQIKTVVV  111 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECC-------------------HHHHHHHHHHHHHHCCCcEEEEEEE
Confidence            467888998 58999999999999998 58777632                   1344555566666555556655554


Q ss_pred             CCC
Q 008516           90 NVK   92 (563)
Q Consensus        90 ~i~   92 (563)
                      +++
T Consensus       112 Dl~  114 (320)
T PLN02780        112 DFS  114 (320)
T ss_pred             ECC
Confidence            443

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=87.18  E-value=1.3  Score=44.96  Aligned_cols=32  Identities=28%  Similarity=0.504  Sum_probs=27.4

Q ss_pred             EEEECC-cHHHHHHHHHHHHhC--C-CeEEEEeCCc
Q 008516           15 VLMVGA-GGIGCELLKTLALSG--F-QDIHIIDMDT   46 (563)
Q Consensus        15 VlvvGa-GgiG~ellknLal~G--v-g~I~iiD~D~   46 (563)
                      |.|||+ |.+|..++-.|+..|  . .+|.++|.+.
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~   36 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDE   36 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCc
Confidence            579999 999999999999999  4 5899998443

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PRK06139 short chain dehydrogenase; Provisional

Probab=87.16  E-value=2  Score=45.29  Aligned_cols=35  Identities=29%  Similarity=0.468  Sum_probs=29.4

Q ss_pred             HHcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .+.+++|+|.|+ ||||.++++.|+..|. ++.+++.
T Consensus         4 ~l~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R   39 (330)
T PRK06139          4 PLHGAVVVITGASSGIGQATAEAFARRGA-RLVLAAR   39 (330)
T ss_pred             CCCCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            366789999996 8999999999999997 5777653

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=87.14  E-value=3.1  Score=42.23  Aligned_cols=74  Identities=15%  Similarity=0.157  Sum_probs=49.2

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCC---CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGF---QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gv---g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      ++.+|.++|+|.+|+.+++.|...|.   .++.+.|.+.-              ..+                   +...
T Consensus         2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~--------------~~~-------------------~~~~   48 (260)
T PTZ00431          2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKK--------------NTP-------------------FVYL   48 (260)
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChh--------------cCC-------------------eEEe
Confidence            45789999999999999999999884   23666553220              000                   0111


Q ss_pred             ccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHH
Q 008516           88 HANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLC  124 (563)
Q Consensus        88 ~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c  124 (563)
                          .   .+.+..+++|+||-|+.....+..+.++.
T Consensus        49 ----~---~~~~~~~~~D~Vilavkp~~~~~vl~~i~   78 (260)
T PTZ00431         49 ----Q---SNEELAKTCDIIVLAVKPDLAGKVLLEIK   78 (260)
T ss_pred             ----C---ChHHHHHhCCEEEEEeCHHHHHHHHHHHH
Confidence                1   12344678899999988777777666653

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=87.12  E-value=1.9  Score=42.85  Aligned_cols=34  Identities=29%  Similarity=0.542  Sum_probs=28.9

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEe
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      ++.+++|+|.| .|+||..+++.|+..|. ++.++|
T Consensus         8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~-~vv~~~   42 (255)
T PRK06113          8 RLDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSD   42 (255)
T ss_pred             CcCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEe
Confidence            57789999998 78999999999999997 466655

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=87.11  E-value=1.6  Score=44.67  Aligned_cols=115  Identities=14%  Similarity=0.196  Sum_probs=61.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEE---EEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIH---IIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~---iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      ..||.|||||+||..+++.|..-+...+.   +.|.+.-...++          .+..++-.--+.+....|++-|++-+
T Consensus         2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~----------~~~~~~~~~l~~ll~~~~DlVVE~A~   71 (267)
T PRK13301          2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPAL----------AGRVALLDGLPGLLAWRPDLVVEAAG   71 (267)
T ss_pred             ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHh----------hccCcccCCHHHHhhcCCCEEEECCC
Confidence            46899999999999999998654433232   333222000011          01111111122233445666666433


Q ss_pred             cCCCCCcchHhhcc-cccEEEE---ccCCHHHHHHHHHHHHhcCC-CEEEeccc
Q 008516           89 ANVKDPKFNVEFFK-QFNVVLN---GLDNLDARRHVNRLCLAADV-PLVESGTT  137 (563)
Q Consensus        89 ~~i~~~~~~~~~~~-~~dvVi~---alDn~~ar~~in~~c~~~~~-pli~~gt~  137 (563)
                      ...- ..+...+++ +.|+|+.   |+-+.+.+..+.+.|++.+. -+|-+|..
T Consensus        72 ~~av-~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSGAi  124 (267)
T PRK13301         72 QQAI-AEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGAI  124 (267)
T ss_pred             HHHH-HHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeChHH
Confidence            3221 123455565 6788876   45556677777888877664 34455543

>PRK09072 short chain dehydrogenase; Provisional

Probab=87.06  E-value=2.2  Score=42.59  Aligned_cols=35  Identities=34%  Similarity=0.667  Sum_probs=29.4

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +++++++|.| .|++|.++++.|+..|. ++.+++.+
T Consensus         3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~   38 (263)
T PRK09072          3 LKDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRN   38 (263)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECC
Confidence            4678899998 59999999999999996 58887743

>PRK07806 short chain dehydrogenase; Provisional

Probab=87.04  E-value=2.5  Score=41.69  Aligned_cols=33  Identities=30%  Similarity=0.484  Sum_probs=27.5

Q ss_pred             HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEe
Q 008516           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD   43 (563)
                      +.+++++|.|+ |+||..+++.|+..|. ++.+++
T Consensus         4 ~~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~   37 (248)
T PRK07806          4 LPGKTALVTGSSRGIGADTAKILAGAGA-HVVVNY   37 (248)
T ss_pred             CCCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEe
Confidence            56788999995 9999999999999996 465554

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=87.02  E-value=2.5  Score=42.73  Aligned_cols=30  Identities=30%  Similarity=0.558  Sum_probs=25.5

Q ss_pred             cEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           14 KVLMVGA-GGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        14 ~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ||+|.|+ |.+|..+++.|...|. ++++++.
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~-~v~~~~r   31 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGR-VVVALTS   31 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCC-EEEEeCC
Confidence            6899995 9999999999999985 6777764

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=86.99  E-value=1.9  Score=43.56  Aligned_cols=88  Identities=18%  Similarity=0.208  Sum_probs=50.4

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCC--eEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516           14 KVLMVGAGGIGCELLKTLALSGFQ--DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (563)
Q Consensus        14 ~VlvvGaGgiG~ellknLal~Gvg--~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i   91 (563)
                      +|.+||+|.+|..+++.|...|..  .+.+.|          |         ...|++.+++    ..+.+.+.  .   
T Consensus         2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~----------r---------~~~~~~~l~~----~~~~~~~~--~---   53 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSP----------R---------NAQIAARLAE----RFPKVRIA--K---   53 (258)
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCChheEEEEC----------C---------CHHHHHHHHH----HcCCceEe--C---
Confidence            699999999999999999998853  233322          1         1223332222    22322221  1   


Q ss_pred             CCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEE
Q 008516           92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVE  133 (563)
Q Consensus        92 ~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~  133 (563)
                          ...+..++.|+|+.|+-.......+.......+.-+|+
T Consensus        54 ----~~~~~~~~aDvVilav~p~~~~~vl~~l~~~~~~~vis   91 (258)
T PRK06476         54 ----DNQAVVDRSDVVFLAVRPQIAEEVLRALRFRPGQTVIS   91 (258)
T ss_pred             ----CHHHHHHhCCEEEEEeCHHHHHHHHHHhccCCCCEEEE
Confidence                12345678999999988544555554432223333444

>PRK13018 cell division protein FtsZ; Provisional

Probab=86.94  E-value=3.5  Score=44.43  Aligned_cols=38  Identities=26%  Similarity=0.489  Sum_probs=32.5

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCC--eEEEEeCCcc
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQ--DIHIIDMDTI   47 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg--~I~iiD~D~V   47 (563)
                      ..+.+|.|||+||-||-++.+|...|+.  .+..++.|.-
T Consensus        26 ~~~~~I~ViGvGGaG~N~v~~m~~~~~~~v~~iaiNTD~q   65 (378)
T PRK13018         26 FGNPKIVVVGCGGAGNNTINRLYEIGIEGAETIAINTDAQ   65 (378)
T ss_pred             cCCCeEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHH
Confidence            3568999999999999999999999976  5677788773

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=86.94  E-value=1.2  Score=38.96  Aligned_cols=85  Identities=21%  Similarity=0.359  Sum_probs=52.4

Q ss_pred             cEEEECCcHHHHHHHHHHHHhC--CCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516           14 KVLMVGAGGIGCELLKTLALSG--FQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (563)
Q Consensus        14 ~VlvvGaGgiG~ellknLal~G--vg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i   91 (563)
                      ||.|||+|.+|...+..+...+  +.-..++|.+                   ..+++.+++   +.  ++.  .+.+  
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~-------------------~~~~~~~~~---~~--~~~--~~~~--   53 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPD-------------------PERAEAFAE---KY--GIP--VYTD--   53 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSS-------------------HHHHHHHHH---HT--TSE--EESS--
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCC-------------------HHHHHHHHH---Hh--ccc--chhH--
Confidence            7999999999999999999883  3223344432                   233333322   22  222  2211  


Q ss_pred             CCCcchHhhcc--cccEEEEccCCHHHHHHHHHHHHhcCCCEE
Q 008516           92 KDPKFNVEFFK--QFNVVLNGLDNLDARRHVNRLCLAADVPLV  132 (563)
Q Consensus        92 ~~~~~~~~~~~--~~dvVi~alDn~~ar~~in~~c~~~~~pli  132 (563)
                           -.++++  +.|+|+.++.+ .....+-..|.++|++++
T Consensus        54 -----~~~ll~~~~~D~V~I~tp~-~~h~~~~~~~l~~g~~v~   90 (120)
T PF01408_consen   54 -----LEELLADEDVDAVIIATPP-SSHAEIAKKALEAGKHVL   90 (120)
T ss_dssp             -----HHHHHHHTTESEEEEESSG-GGHHHHHHHHHHTTSEEE
T ss_pred             -----HHHHHHhhcCCEEEEecCC-cchHHHHHHHHHcCCEEE
Confidence                 134454  78999998876 446666777778877544

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK08643 acetoin reductase; Validated

Probab=86.91  E-value=3.5  Score=40.92  Aligned_cols=32  Identities=34%  Similarity=0.635  Sum_probs=26.7

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        12 ~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +++++|.| .|+||.++++.|+..|. ++.++|.
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~r   34 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDY   34 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence            46788887 78999999999999997 6777763

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=86.89  E-value=0.96  Score=48.04  Aligned_cols=58  Identities=22%  Similarity=0.275  Sum_probs=34.5

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHhcCcccc--ceeeeccc-ccccccccccCCCCCCCCcccCCC
Q 008516          375 HAVATTNAIIAGLIVIEAIKVLLKDTDKY--RMTYCLEH-ITKKMLLMPVEPYEPNKSCYVCSE  435 (563)
Q Consensus       375 PAIATTnAiVAGl~vlE~~K~l~~~~~~~--r~~f~~~~-~~~~~~~~p~~~~~pn~~C~vC~~  435 (563)
                      +.++.+.++||++++.|++|+|.|..+..  |...++.. .....  ... ....+|+|++|+.
T Consensus       185 gv~~p~~~~i~~~~a~ealk~l~g~~~~l~~~l~~~d~~~~~~~~--~~~-~~~~~~~Cp~Cg~  245 (339)
T PRK07688        185 GIISPAVQIVASYQVTEALKLLVGDYEALRDGLVSFDVWKNEYSC--MNV-QKLKKDNCPSCGE  245 (339)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCeEEE--EEe-cCCCCCCCCCCCC
Confidence            34555778999999999999999864332  22222221 11111  111 1134689999985

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=86.86  E-value=0.88  Score=44.09  Aligned_cols=106  Identities=24%  Similarity=0.275  Sum_probs=64.0

Q ss_pred             cEEEECCcHHHHH-HHHHHHHh----CCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516           14 KVLMVGAGGIGCE-LLKTLALS----GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        14 ~VlvvGaGgiG~e-llknLal~----Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      ||.+||+|+.-.. .+..+...    +.++|.++|-|.   ..|..            =...+++.+++.++.++|+...
T Consensus         1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~---~RL~~------------~~~~~~~~~~~~~~~~~v~~tt   65 (183)
T PF02056_consen    1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDE---ERLEI------------VERLARRMVEEAGADLKVEATT   65 (183)
T ss_dssp             EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCH---HHHHH------------HHHHHHHHHHHCTTSSEEEEES
T ss_pred             CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCH---HHHHH------------HHHHHHHHHHhcCCCeEEEEeC
Confidence            6899999987554 33333322    235888888554   11111            0234555666788888988765


Q ss_pred             cCCCCCcchHhhcccccEEEEcc--CCHHHHHHHHHHHHhcCCCEEEecccccee
Q 008516           89 ANVKDPKFNVEFFKQFNVVLNGL--DNLDARRHVNRLCLAADVPLVESGTTGFLG  141 (563)
Q Consensus        89 ~~i~~~~~~~~~~~~~dvVi~al--Dn~~ar~~in~~c~~~~~pli~~gt~G~~G  141 (563)
                      +.       .+-++++|+||++.  ...++|..=-+...++|+.-....|.|..|
T Consensus        66 d~-------~eAl~gADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG  113 (183)
T PF02056_consen   66 DR-------REALEGADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGG  113 (183)
T ss_dssp             SH-------HHHHTTESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHH
T ss_pred             CH-------HHHhCCCCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccH
Confidence            43       46688999999964  555666665566777776554455555444

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=86.86  E-value=0.96  Score=53.00  Aligned_cols=163  Identities=12%  Similarity=0.096  Sum_probs=86.9

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCc---cccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLN---RQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLn---RqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      .+|.|||+|-+|+-++-.++..|+ .++++|.+.=......   ++.+=..-.-|+-..+...+.+.+      |+... 
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~------i~~~~-  407 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSN------LTPTL-  407 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCC-cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhC------eEEeC-
Confidence            479999999999999999999998 6888885542211100   000000001111111111122211      11111 


Q ss_pred             CCCCCcchHhhcccccEEEEcc-CCHHHHHHHHHHHHhcCC--CEEEecccccee-eEEEEeCCCCccccccCCCCCCCC
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLAADV--PLVESGTTGFLG-QVTVHVKGKTECYECQPKPAPKTY  165 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~al-Dn~~ar~~in~~c~~~~~--pli~~gt~G~~G-~v~v~~~~~t~Cy~C~~~~~~~~~  165 (563)
                             +.+-++++|+||.|. .+.+....+-+..-..-.  .++.+.|.+..- .+.-......-+..-+.-.++..-
T Consensus       408 -------~~~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m  480 (737)
T TIGR02441       408 -------DYSGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKM  480 (737)
T ss_pred             -------CHHHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccC
Confidence                   113468999999975 667766666554443322  355555554321 010011111223333333445556


Q ss_pred             CceeeccCCCCchhHHHHHHHHHHHH
Q 008516          166 PVCTITSTPSKFVHCIVWAKDLLFAK  191 (563)
Q Consensus       166 p~cti~~~p~~~~hci~~a~~~lf~~  191 (563)
                      |...|...+.+...++..+.+ +...
T Consensus       481 ~LvEvv~g~~Ts~~~~~~~~~-~~~~  505 (737)
T TIGR02441       481 QLLEIITHDGTSKDTLASAVA-VGLK  505 (737)
T ss_pred             ceEEEeCCCCCCHHHHHHHHH-HHHH
Confidence            788888888888888998887 3443

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=86.78  E-value=2.9  Score=41.14  Aligned_cols=34  Identities=26%  Similarity=0.583  Sum_probs=28.3

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      |++++++|.| .|++|.++++.|+..|. ++.++|.
T Consensus         1 ~~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r   35 (250)
T TIGR03206         1 LKDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDL   35 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecC
Confidence            4578899998 58999999999999987 5777653

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK06523 short chain dehydrogenase; Provisional

Probab=86.78  E-value=2  Score=42.78  Aligned_cols=55  Identities=18%  Similarity=0.330  Sum_probs=38.5

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCch
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQS   66 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~   66 (563)
                      ++++++++|.| .||||.++++.|+..|. ++.+++.+.-+  ++.....+-.-|+...
T Consensus         6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~r~~~~--~~~~~~~~~~~D~~~~   61 (260)
T PRK06523          6 ELAGKRALVTGGTKGIGAATVARLLEAGA-RVVTTARSRPD--DLPEGVEFVAADLTTA   61 (260)
T ss_pred             CCCCCEEEEECCCCchhHHHHHHHHHCCC-EEEEEeCChhh--hcCCceeEEecCCCCH
Confidence            46788999999 58999999999999997 58888765422  2222232334566554

>PRK08589 short chain dehydrogenase; Validated

Probab=86.70  E-value=2.3  Score=42.94  Aligned_cols=34  Identities=26%  Similarity=0.381  Sum_probs=28.6

Q ss_pred             HHcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEe
Q 008516            9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus         9 kL~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD   43 (563)
                      ++.+++++|.|+ ||||.++++.|+..|. ++.++|
T Consensus         3 ~l~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~   37 (272)
T PRK08589          3 RLENKVAVITGASTGIGQASAIALAQEGA-YVLAVD   37 (272)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEe
Confidence            366788999985 8999999999999996 566665

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=86.67  E-value=3  Score=43.25  Aligned_cols=32  Identities=22%  Similarity=0.578  Sum_probs=27.9

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .+|.+||+|.+|..++.+|+..|. .++++|.+
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~-~V~v~d~~   33 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGH-QLQVFDVN   33 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence            379999999999999999999996 68887753

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=86.62  E-value=4.5  Score=43.00  Aligned_cols=95  Identities=23%  Similarity=0.253  Sum_probs=54.2

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCCCeEE-EEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           13 AKVLMVGA-GGIGCELLKTLALSGFQDIH-IIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        13 ~~VlvvGa-GgiG~ellknLal~Gvg~I~-iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      .||+|+|+ |.+|.++++.|....--++. +.|.                ...|+.        +.+..|..... ....
T Consensus         3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~----------------~~~g~~--------l~~~~~~~~~~-~~~~   57 (343)
T PRK00436          3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSR----------------SSAGKP--------LSDVHPHLRGL-VDLV   57 (343)
T ss_pred             eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECc----------------cccCcc--------hHHhCcccccc-cCce
Confidence            68999998 88999999999976433443 3331                112221        11111211100 0001


Q ss_pred             CCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEec
Q 008516           91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG  135 (563)
Q Consensus        91 i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~g  135 (563)
                      +.+  .+...+.+.|+|+.|+.+.....++.. +.+.++++||.+
T Consensus        58 ~~~--~~~~~~~~vD~Vf~alP~~~~~~~v~~-a~~aG~~VID~S   99 (343)
T PRK00436         58 LEP--LDPEILAGADVVFLALPHGVSMDLAPQ-LLEAGVKVIDLS   99 (343)
T ss_pred             eec--CCHHHhcCCCEEEECCCcHHHHHHHHH-HHhCCCEEEECC
Confidence            111  112245789999999998666655544 566889999865

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=86.56  E-value=2.6  Score=41.03  Aligned_cols=35  Identities=31%  Similarity=0.560  Sum_probs=29.2

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +.+++|+|.| .|++|.++++.|+..|.. +.+++.+
T Consensus         3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~-v~~~~r~   38 (246)
T PRK05653          3 LQGKTALVTGASRGIGRAIALRLAADGAK-VVIYDSN   38 (246)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCC
Confidence            4567899998 499999999999999986 7777654

>PRK06114 short chain dehydrogenase; Provisional

Probab=86.55  E-value=2.7  Score=41.79  Aligned_cols=35  Identities=29%  Similarity=0.582  Sum_probs=29.1

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ++.+++++|.| .||||.++++.|+..|. ++.++|.
T Consensus         5 ~~~~k~~lVtG~s~gIG~~ia~~l~~~G~-~v~~~~r   40 (254)
T PRK06114          5 DLDGQVAFVTGAGSGIGQRIAIGLAQAGA-DVALFDL   40 (254)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            36678899997 77999999999999997 6777764

>PRK06198 short chain dehydrogenase; Provisional

Probab=86.54  E-value=3  Score=41.43  Aligned_cols=37  Identities=22%  Similarity=0.454  Sum_probs=31.4

Q ss_pred             HHcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         9 kL~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .+.+++++|.|+ |+||..+++.|+..|..++.++|.+
T Consensus         3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~   40 (260)
T PRK06198          3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRN   40 (260)
T ss_pred             CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCC
Confidence            367788999984 8999999999999998778888754

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=86.32  E-value=2.7  Score=41.45  Aligned_cols=28  Identities=32%  Similarity=0.573  Sum_probs=23.9

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQ   37 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg   37 (563)
                      +.+++++|.| .|+||.++++.|+..|..
T Consensus         2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~   30 (250)
T PRK08063          2 FSGKVALVTGSSRGIGKAIALRLAEEGYD   30 (250)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCE
Confidence            4567899998 589999999999999864

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=86.32  E-value=2.9  Score=41.46  Aligned_cols=32  Identities=19%  Similarity=0.319  Sum_probs=26.6

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        13 ~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ++|+|.| .|++|.++++.|+..|. ++.++|.+
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~   33 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQGH-KVIATGRR   33 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC-EEEEEECC
Confidence            3689998 59999999999999997 57777643

>cd08230 glucose_DH Glucose dehydrogenase

Probab=86.27  E-value=3.7  Score=43.19  Aligned_cols=33  Identities=30%  Similarity=0.547  Sum_probs=28.7

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .+.+|+|.|+|++|...+..+..+|. +++++|.
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~  204 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNR  204 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEec
Confidence            56899999999999999999989998 5777764

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK08324 short chain dehydrogenase; Validated

Probab=86.25  E-value=4.4  Score=47.07  Aligned_cols=34  Identities=41%  Similarity=0.609  Sum_probs=29.0

Q ss_pred             cCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        11 ~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .+++|+|.| .|+||..+++.|+..|. ++.++|.+
T Consensus       421 ~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~  455 (681)
T PRK08324        421 AGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLD  455 (681)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCC
Confidence            457899999 59999999999999997 68888743

>PLN02688 pyrroline-5-carboxylate reductase

Probab=86.17  E-value=3.2  Score=41.94  Aligned_cols=78  Identities=21%  Similarity=0.299  Sum_probs=48.1

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCC---CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGF---QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gv---g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      .||.+||+|.+|..++++|...|.   ..|++++         +|         ...|++.+    .+.  ++.+..   
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~---------~r---------~~~~~~~~----~~~--g~~~~~---   53 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTAD---------DS---------NPARRDVF----QSL--GVKTAA---   53 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEe---------CC---------CHHHHHHH----HHc--CCEEeC---
Confidence            479999999999999999999985   2455541         11         11232222    222  233211   


Q ss_pred             CCCCCcchHhhcccccEEEEccCCHHHHHHHHHH
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL  123 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~  123 (563)
                            ...+..++.|+||.++.....+..+..+
T Consensus        54 ------~~~e~~~~aDvVil~v~~~~~~~vl~~l   81 (266)
T PLN02688         54 ------SNTEVVKSSDVIILAVKPQVVKDVLTEL   81 (266)
T ss_pred             ------ChHHHHhcCCEEEEEECcHHHHHHHHHH
Confidence                  1234567899999999765556665554

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=86.16  E-value=1  Score=46.88  Aligned_cols=35  Identities=31%  Similarity=0.510  Sum_probs=31.6

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +.+++|+|+|+|++|..+++.|...|. +++++|.+
T Consensus       150 l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~  184 (296)
T PRK08306        150 IHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARK  184 (296)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            568999999999999999999999997 89998744

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=86.15  E-value=1.2  Score=40.59  Aligned_cols=83  Identities=17%  Similarity=0.285  Sum_probs=45.0

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      -...||-|||+|-+|..+++.|...|. .|.-+               +.     +  +...++.+..+-+...+..   
T Consensus         8 ~~~l~I~iIGaGrVG~~La~aL~~ag~-~v~~v---------------~s-----r--s~~sa~~a~~~~~~~~~~~---   61 (127)
T PF10727_consen    8 AARLKIGIIGAGRVGTALARALARAGH-EVVGV---------------YS-----R--SPASAERAAAFIGAGAILD---   61 (127)
T ss_dssp             ----EEEEECTSCCCCHHHHHHHHTTS-EEEEE---------------SS-----C--HH-HHHHHHC--TT--------
T ss_pred             CCccEEEEECCCHHHHHHHHHHHHCCC-eEEEE---------------Ee-----C--Ccccccccccccccccccc---
Confidence            346789999999999999999999996 34332               21     1  1223344444444433221   


Q ss_pred             CCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHH
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL  125 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~  125 (563)
                             ..+...++|+|+.++-+........+++.
T Consensus        62 -------~~~~~~~aDlv~iavpDdaI~~va~~La~   90 (127)
T PF10727_consen   62 -------LEEILRDADLVFIAVPDDAIAEVAEQLAQ   90 (127)
T ss_dssp             -------TTGGGCC-SEEEE-S-CCHHHHHHHHHHC
T ss_pred             -------cccccccCCEEEEEechHHHHHHHHHHHH
Confidence                   13557889999998865555555555543

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=86.12  E-value=3.5  Score=45.11  Aligned_cols=35  Identities=26%  Similarity=0.555  Sum_probs=30.6

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +.+++|+|+|.|+.|..+++.|+..|. ++++.|.+
T Consensus         3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~-~v~~~d~~   37 (445)
T PRK04308          3 FQNKKILVAGLGGTGISMIAYLRKNGA-EVAAYDAE   37 (445)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            457899999999999999999999997 68888854

>PRK08226 short chain dehydrogenase; Provisional

Probab=86.10  E-value=2.7  Score=41.87  Aligned_cols=35  Identities=26%  Similarity=0.566  Sum_probs=29.4

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ++.+++++|.| .|+||..+++.|+..|. ++.+++.
T Consensus         3 ~~~~~~~lItG~s~giG~~la~~l~~~G~-~Vv~~~r   38 (263)
T PRK08226          3 KLTGKTALITGALQGIGEGIARVFARHGA-NLILLDI   38 (263)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecC
Confidence            46678899998 78999999999999997 4777753

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=86.08  E-value=4.6  Score=42.26  Aligned_cols=30  Identities=23%  Similarity=0.454  Sum_probs=24.9

Q ss_pred             cEEEECC-cHHHHHHHHHHHHhCCCeEEEEe
Q 008516           14 KVLMVGA-GGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        14 ~VlvvGa-GgiG~ellknLal~Gvg~I~iiD   43 (563)
                      ||+|.|+ |.||..+++.|...|...+..+|
T Consensus         2 kilITGgtG~iG~~l~~~L~~~g~~~v~~~~   32 (352)
T PRK10084          2 KILVTGGAGFIGSAVVRHIINNTQDSVVNVD   32 (352)
T ss_pred             eEEEECCCcHHhHHHHHHHHHhCCCeEEEec
Confidence            7999985 99999999999999875555555

>PRK07677 short chain dehydrogenase; Provisional

Probab=86.08  E-value=2.9  Score=41.50  Aligned_cols=33  Identities=24%  Similarity=0.431  Sum_probs=27.2

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        12 ~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +++++|.| .||||..+++.|+..|. ++.++|.+
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~   34 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRT   34 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            35788888 57899999999999998 68887644

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=86.00  E-value=2.5  Score=44.92  Aligned_cols=91  Identities=19%  Similarity=0.320  Sum_probs=56.4

Q ss_pred             cEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCC
Q 008516           14 KVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK   92 (563)
Q Consensus        14 ~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~   92 (563)
                      +|+||| .|.+|.|+++.|...|...+.++=             +.+..+.|+.=.         + .+..+  ...++.
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~-------------~as~~~~g~~~~---------~-~~~~~--~~~~~~   55 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVL-------------LASDRSAGRKVT---------F-KGKEL--EVNEAK   55 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEE-------------EeccccCCCeee---------e-CCeeE--EEEeCC
Confidence            689999 789999999999987765443321             123334444211         0 11111  111121


Q ss_pred             CCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEec
Q 008516           93 DPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG  135 (563)
Q Consensus        93 ~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~g  135 (563)
                           .+-+++.|+|+.|+.+..++.+..+. ...|..+||..
T Consensus        56 -----~~~~~~~D~v~~a~g~~~s~~~a~~~-~~~G~~VID~s   92 (339)
T TIGR01296        56 -----IESFEGIDIALFSAGGSVSKEFAPKA-AKCGAIVIDNT   92 (339)
T ss_pred             -----hHHhcCCCEEEECCCHHHHHHHHHHH-HHCCCEEEECC
Confidence                 22348999999999988888776554 55677788765

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=86.00  E-value=2.4  Score=48.00  Aligned_cols=77  Identities=18%  Similarity=0.224  Sum_probs=50.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i   91 (563)
                      +.+++|+|+|.+|..+++.|...|. .++++|.|.-                   |++.+    ++.    ......++.
T Consensus       417 ~~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~-------------------~~~~~----~~~----g~~~i~GD~  468 (558)
T PRK10669        417 CNHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRT-------------------RVDEL----RER----GIRAVLGNA  468 (558)
T ss_pred             CCCEEEECCChHHHHHHHHHHHCCC-CEEEEECCHH-------------------HHHHH----HHC----CCeEEEcCC
Confidence            4789999999999999999999997 5889986642                   22222    221    233455555


Q ss_pred             CCCc-chHhhcccccEEEEccCCHHH
Q 008516           92 KDPK-FNVEFFKQFNVVLNGLDNLDA  116 (563)
Q Consensus        92 ~~~~-~~~~~~~~~dvVi~alDn~~a  116 (563)
                      ++.. ....-.+++|.|+.+++|...
T Consensus       469 ~~~~~L~~a~i~~a~~viv~~~~~~~  494 (558)
T PRK10669        469 ANEEIMQLAHLDCARWLLLTIPNGYE  494 (558)
T ss_pred             CCHHHHHhcCccccCEEEEEcCChHH
Confidence            4321 122335788988887765443

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=85.96  E-value=2.7  Score=42.14  Aligned_cols=34  Identities=35%  Similarity=0.529  Sum_probs=28.2

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEe
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      ++.+++++|.| .|+||.++++.|+..|.. +.++|
T Consensus         7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~-vv~~~   41 (265)
T PRK07097          7 SLKGKIALITGASYGIGFAIAKAYAKAGAT-IVFND   41 (265)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEe
Confidence            45678899998 589999999999999974 66665

>PRK07856 short chain dehydrogenase; Provisional

Probab=85.89  E-value=1.6  Score=43.28  Aligned_cols=36  Identities=22%  Similarity=0.473  Sum_probs=30.4

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDT   46 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~   46 (563)
                      +.+++++|.| .||||.++++.|+..|. ++.++|.+.
T Consensus         4 ~~~k~~lItGas~gIG~~la~~l~~~g~-~v~~~~r~~   40 (252)
T PRK07856          4 LTGRVVLVTGGTRGIGAGIARAFLAAGA-TVVVCGRRA   40 (252)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCh
Confidence            5678899998 58999999999999997 688887653

>PLN00198 anthocyanidin reductase; Provisional

Probab=85.74  E-value=9.1  Score=39.89  Aligned_cols=35  Identities=20%  Similarity=0.325  Sum_probs=28.3

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +++++|+|.| +|.||+.+++.|...|. ++++++.|
T Consensus         7 ~~~~~vlItG~~GfIG~~l~~~L~~~g~-~V~~~~r~   42 (338)
T PLN00198          7 TGKKTACVIGGTGFLASLLIKLLLQKGY-AVNTTVRD   42 (338)
T ss_pred             CCCCeEEEECCchHHHHHHHHHHHHCCC-EEEEEECC
Confidence            3567899998 78899999999999996 56655543

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=85.73  E-value=3.6  Score=40.78  Aligned_cols=34  Identities=41%  Similarity=0.588  Sum_probs=28.4

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEe
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      .|.+++++|.| .||||..+++.|+..|. ++.++|
T Consensus         6 ~l~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~   40 (254)
T PRK08085          6 SLAGKNILITGSAQGIGFLLATGLAEYGA-EIIIND   40 (254)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEc
Confidence            36678899998 68999999999999996 566665

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=85.68  E-value=2.9  Score=40.86  Aligned_cols=34  Identities=26%  Similarity=0.429  Sum_probs=28.7

Q ss_pred             HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +++++|+|.|+ |++|..+++.|+..|. ++.+++.
T Consensus         3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r   37 (238)
T PRK05786          3 LKGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSR   37 (238)
T ss_pred             cCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            56789999985 7899999999999998 5777654

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=85.65  E-value=1.3  Score=47.52  Aligned_cols=39  Identities=23%  Similarity=0.390  Sum_probs=33.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHh-CCCeEEEEeCCccCcc
Q 008516           12 GAKVLMVGAGGIGCELLKTLALS-GFQDIHIIDMDTIEVS   50 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~-Gvg~I~iiD~D~Ve~s   50 (563)
                      ...|+|||+|-+|+.+|-.|++. |..+++|+|.+.+-..
T Consensus        30 ~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~g   69 (407)
T TIGR01373        30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGG   69 (407)
T ss_pred             cCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCc
Confidence            34699999999999999999985 8778999998876543

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=85.63  E-value=3.9  Score=43.40  Aligned_cols=92  Identities=20%  Similarity=0.298  Sum_probs=55.4

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516           13 AKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (563)
Q Consensus        13 ~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i   91 (563)
                      .||.|+|+ |-+|.|+++.|...+.-...+.=             +...+..|++=        . + .+....     +
T Consensus         5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~-------------v~s~~~aG~~l--------~-~-~~~~l~-----~   56 (336)
T PRK05671          5 LDIAVVGATGTVGEALVQILEERDFPVGTLHL-------------LASSESAGHSV--------P-F-AGKNLR-----V   56 (336)
T ss_pred             CEEEEEccCCHHHHHHHHHHhhCCCCceEEEE-------------EECcccCCCee--------c-c-CCcceE-----E
Confidence            68999996 88999999999976654333221             11223345431        1 1 111111     1


Q ss_pred             CCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEec
Q 008516           92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG  135 (563)
Q Consensus        92 ~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~g  135 (563)
                      .+.. ..+ ++++|+|+.|+.+-.++.++.+. .+.++.+||.+
T Consensus        57 ~~~~-~~~-~~~vD~vFla~p~~~s~~~v~~~-~~~G~~VIDlS   97 (336)
T PRK05671         57 REVD-SFD-FSQVQLAFFAAGAAVSRSFAEKA-RAAGCSVIDLS   97 (336)
T ss_pred             eeCC-hHH-hcCCCEEEEcCCHHHHHHHHHHH-HHCCCeEEECc
Confidence            1111 123 48899999999976666665554 66788899865

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=85.62  E-value=1.3  Score=40.50  Aligned_cols=28  Identities=36%  Similarity=0.729  Sum_probs=24.7

Q ss_pred             EEEECCcHHHHHHHHHHHHhCCCeEEEEe
Q 008516           15 VLMVGAGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        15 VlvvGaGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      |+|+|+|++|+.++-.|...|. ++++++
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~   28 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGH-DVTLVS   28 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CEEECcCHHHHHHHHHHHHCCC-ceEEEE
Confidence            7899999999999999999776 577765

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=85.60  E-value=4.7  Score=44.61  Aligned_cols=34  Identities=32%  Similarity=0.537  Sum_probs=30.0

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .+.+|+|||+|..|.+.+..|++.|.. ++|+|..
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~-V~i~e~~  173 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQ-VVVFDRH  173 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCe-EEEEecC
Confidence            457899999999999999999999984 8888754

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK05717 oxidoreductase; Validated

Probab=85.48  E-value=2.6  Score=41.96  Aligned_cols=35  Identities=31%  Similarity=0.551  Sum_probs=29.5

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +++++++|.| .|+||.++++.|+..|. ++.++|.+
T Consensus         8 ~~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~   43 (255)
T PRK05717          8 HNGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLD   43 (255)
T ss_pred             cCCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCC
Confidence            5678899998 58999999999999996 68887743

>PRK09330 cell division protein FtsZ; Validated

Probab=85.47  E-value=3.4  Score=44.62  Aligned_cols=39  Identities=26%  Similarity=0.462  Sum_probs=31.9

Q ss_pred             HHHcCCcEEEECCcHHHHHHHHHHHHhCCC--eEEEEeCCc
Q 008516            8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQ--DIHIIDMDT   46 (563)
Q Consensus         8 ~kL~~~~VlvvGaGgiG~ellknLal~Gvg--~I~iiD~D~   46 (563)
                      ..-...+|-|||.||-||-++.+|...|+.  .+..++.|.
T Consensus         9 ~~~~~~~IkViGvGG~G~Nav~~m~~~~~~~v~fia~NTD~   49 (384)
T PRK09330          9 EENQGAVIKVIGVGGGGGNAVNRMIEEGIQGVEFIAANTDA   49 (384)
T ss_pred             ccccCCeEEEEEECCcHHHHHHHHHHcCCCCceEEEEeCcH
Confidence            344578999999999999999999999986  456666665

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=85.41  E-value=4.2  Score=41.73  Aligned_cols=31  Identities=35%  Similarity=0.611  Sum_probs=26.6

Q ss_pred             EEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           15 VLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        15 VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      |+|.| +|-||+++++.|+..|...+.++|..
T Consensus         2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~   33 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNL   33 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHhCCCceEEEecCC
Confidence            67887 69999999999999998778888754

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=85.34  E-value=1  Score=47.24  Aligned_cols=32  Identities=38%  Similarity=0.685  Sum_probs=29.7

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCC-eEEEEeC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQ-DIHIIDM   44 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg-~I~iiD~   44 (563)
                      .||.|+|+|++|+.++-.|+.-+++ .+.|+|-
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi   33 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDI   33 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEEc
Confidence            4899999999999999999999999 9999983

>PRK13243 glyoxylate reductase; Reviewed

Probab=85.32  E-value=1.1  Score=47.54  Aligned_cols=92  Identities=14%  Similarity=0.147  Sum_probs=57.9

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      .|.+++|.|||.|.||.++++.|...|. ++..+|...-                   + ...    ...  .+.     
T Consensus       147 ~L~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~-------------------~-~~~----~~~--~~~-----  194 (333)
T PRK13243        147 DVYGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRTRK-------------------P-EAE----KEL--GAE-----  194 (333)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCC-------------------h-hhH----HHc--CCE-----
Confidence            5889999999999999999999998887 5777764210                   0 000    001  111     


Q ss_pred             cCCCCCcchHhhcccccEEEEcc-CCHHHHHHHHHHHHh---cCCCEEEeccc
Q 008516           89 ANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLA---ADVPLVESGTT  137 (563)
Q Consensus        89 ~~i~~~~~~~~~~~~~dvVi~al-Dn~~ar~~in~~c~~---~~~pli~~gt~  137 (563)
                        ..   .-.+.+++.|+|+.++ .+.+.+..+++-...   .+.-+|+.+..
T Consensus       195 --~~---~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg  242 (333)
T PRK13243        195 --YR---PLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARG  242 (333)
T ss_pred             --ec---CHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCc
Confidence              00   1246788999998876 445667777654333   33446666543

>TIGR00065 ftsZ cell division protein FtsZ

Probab=85.21  E-value=3.7  Score=43.82  Aligned_cols=41  Identities=22%  Similarity=0.394  Sum_probs=32.7

Q ss_pred             HHHcCCcEEEECCcHHHHHHHHHHHHhCCCe--EEEEeCCccC
Q 008516            8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQD--IHIIDMDTIE   48 (563)
Q Consensus         8 ~kL~~~~VlvvGaGgiG~ellknLal~Gvg~--I~iiD~D~Ve   48 (563)
                      +--.+.+|.|||.||-||-++..|.+.|+..  +..+|.|.-.
T Consensus        13 ~~~~~~~i~viGvGg~G~n~v~~l~~~~~~~~~~iainTD~~~   55 (349)
T TIGR00065        13 QPSNKAKIKVIGVGGGGNNTVNRMLEEGVEGVEFIAINTDAQH   55 (349)
T ss_pred             CcccCCeEEEEEeCCcHHHHHHHHHHcCCCceEEEEEECCHHH
Confidence            3335679999999999999999999999864  4557877633

This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=85.20  E-value=2.4  Score=50.81  Aligned_cols=40  Identities=28%  Similarity=0.325  Sum_probs=34.4

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCccc
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSN   51 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sN   51 (563)
                      ..+||+|||+|.-|-+.|..|++.|. +++++|...++.-|
T Consensus       382 tgKKVaVVGaGPAGLsAA~~La~~Gh-~Vtv~E~~~i~gl~  421 (1028)
T PRK06567        382 TNYNILVTGLGPAGFSLSYYLLRSGH-NVTAIDGLKITLLP  421 (1028)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCC-eEEEEccccccccc
Confidence            56799999999999999999999997 69999987665444

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=85.20  E-value=2.3  Score=43.85  Aligned_cols=101  Identities=19%  Similarity=0.329  Sum_probs=55.7

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc-C
Q 008516           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA-N   90 (563)
Q Consensus        13 ~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~-~   90 (563)
                      +||||+| .|-+|..+.+.|...|.. +.-++..              .-|+.  ..+.+.+.+.+..|++-|..-.- +
T Consensus         1 MriLI~GasG~lG~~l~~~l~~~~~~-v~~~~r~--------------~~dl~--d~~~~~~~~~~~~pd~Vin~aa~~~   63 (286)
T PF04321_consen    1 MRILITGASGFLGSALARALKERGYE-VIATSRS--------------DLDLT--DPEAVAKLLEAFKPDVVINCAAYTN   63 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTTSEE-EEEESTT--------------CS-TT--SHHHHHHHHHHH--SEEEE------
T ss_pred             CEEEEECCCCHHHHHHHHHHhhCCCE-EEEeCch--------------hcCCC--CHHHHHHHHHHhCCCeEeccceeec
Confidence            4899999 599999999999987753 3333333              11222  34566777777777755543210 0


Q ss_pred             CCCCc-chHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccc
Q 008516           91 VKDPK-FNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGF  139 (563)
Q Consensus        91 i~~~~-~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~  139 (563)
                      +..-. .....+         .-|..+-..+.+.|...+.++|.-.|...
T Consensus        64 ~~~ce~~p~~a~---------~iN~~~~~~la~~~~~~~~~li~~STd~V  104 (286)
T PF04321_consen   64 VDACEKNPEEAY---------AINVDATKNLAEACKERGARLIHISTDYV  104 (286)
T ss_dssp             HHHHHHSHHHHH---------HHHTHHHHHHHHHHHHCT-EEEEEEEGGG
T ss_pred             HHhhhhChhhhH---------HHhhHHHHHHHHHHHHcCCcEEEeeccEE
Confidence            10000 000000         01334445777899999999998877653

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=85.19  E-value=2.8  Score=44.60  Aligned_cols=100  Identities=16%  Similarity=0.233  Sum_probs=57.7

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHH----HHhhCCCceEEE
Q 008516           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDA----VLKFRPQMSITA   86 (563)
Q Consensus        12 ~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~----l~~~np~v~I~~   86 (563)
                      ..||+|+| .|-+|.++++.|.....-+|+.+...              .++.|++-..+..-.    +..-...+.+..
T Consensus         3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s--------------~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~   68 (349)
T PRK08664          3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAAS--------------ERSAGKTYGEAVRWQLDGPIPEEVADMEVVS   68 (349)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcC--------------hhhcCCcccccccccccccccccccceEEEe
Confidence            47999998 79999999999997666677765211              223343321110000    000000011211


Q ss_pred             eccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEec
Q 008516           87 HHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG  135 (563)
Q Consensus        87 ~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~g  135 (563)
                      .         +.+-+.+.|+|+.|+..-.+..++ ......++.+|+.+
T Consensus        69 ~---------~~~~~~~~DvVf~a~p~~~s~~~~-~~~~~~G~~vIDls  107 (349)
T PRK08664         69 T---------DPEAVDDVDIVFSALPSDVAGEVE-EEFAKAGKPVFSNA  107 (349)
T ss_pred             C---------CHHHhcCCCEEEEeCChhHHHHHH-HHHHHCCCEEEECC
Confidence            1         122347899999999886666666 44466788887754

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=85.17  E-value=0.99  Score=50.04  Aligned_cols=41  Identities=27%  Similarity=0.318  Sum_probs=36.0

Q ss_pred             CHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            3 SERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         3 ~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      |-+....+..++|+|+|+|+.|..+++.|...|. .+++.|.
T Consensus         6 ~~~~~~~~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~   46 (473)
T PRK00141          6 PLSALPQELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADD   46 (473)
T ss_pred             hhhhcccccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECC
Confidence            4556677888999999999999999999999998 8888874

>PRK07890 short chain dehydrogenase; Provisional

Probab=85.15  E-value=3.3  Score=41.01  Aligned_cols=34  Identities=29%  Similarity=0.458  Sum_probs=29.0

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      |.+++++|.| .|+||..+++.|+.-|. ++.++|.
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r   37 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAAR   37 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeC
Confidence            5678899998 58999999999999997 6778763

>PLN02503 fatty acyl-CoA reductase 2

Probab=85.12  E-value=6.8  Score=44.92  Aligned_cols=132  Identities=17%  Similarity=0.186  Sum_probs=75.1

Q ss_pred             HHHHHHcCCcEEEECC-cHHHHHHHHHHHHhC--CCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC-
Q 008516            5 RQLEAIKGAKVLMVGA-GGIGCELLKTLALSG--FQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP-   80 (563)
Q Consensus         5 ~~q~kL~~~~VlvvGa-GgiG~ellknLal~G--vg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np-   80 (563)
                      ..++-+++++|+|-|+ |-+|..+++.|.+.+  +++|.++....=..+-..|..    ..+   +...+-+.+++.+| 
T Consensus       112 ~I~~f~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~----~~l---~~~~lf~~l~~~~g~  184 (605)
T PLN02503        112 GIAEFLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLK----NEV---IDAELFKCLQETHGK  184 (605)
T ss_pred             chhhhhcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHH----HHH---hhhhhHHHHHHhcCc
Confidence            3567789999999996 889999999999764  678887642211111111100    000   00011233444444 


Q ss_pred             ------CceEEEeccCCCCCcc------hHhhcccccEEEEccCC------HH--------HHHHHHHHHHhcC--CCEE
Q 008516           81 ------QMSITAHHANVKDPKF------NVEFFKQFNVVLNGLDN------LD--------ARRHVNRLCLAAD--VPLV  132 (563)
Q Consensus        81 ------~v~I~~~~~~i~~~~~------~~~~~~~~dvVi~alDn------~~--------ar~~in~~c~~~~--~pli  132 (563)
                            .-+|+++.+++++..+      -..+.++.|+||.+...      .+        .-..+-++|...+  ..++
T Consensus       185 ~~~~~~~~Ki~~v~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~f~~~~~~a~~vNV~GT~nLLelA~~~~~lk~fV  264 (605)
T PLN02503        185 SYQSFMLSKLVPVVGNVCESNLGLEPDLADEIAKEVDVIINSAANTTFDERYDVAIDINTRGPCHLMSFAKKCKKLKLFL  264 (605)
T ss_pred             cccccccccEEEEEeeCCCcccCCCHHHHHHHHhcCCEEEECccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCCeEE
Confidence                  2478888888876532      12345679999996322      11        1233445555543  4678


Q ss_pred             EeccccceeeE
Q 008516          133 ESGTTGFLGQV  143 (563)
Q Consensus       133 ~~gt~G~~G~v  143 (563)
                      ..+|...+|..
T Consensus       265 ~vSTayVyG~~  275 (605)
T PLN02503        265 QVSTAYVNGQR  275 (605)
T ss_pred             EccCceeecCC
Confidence            88776555543

>PRK08278 short chain dehydrogenase; Provisional

Probab=85.05  E-value=4  Score=41.29  Aligned_cols=35  Identities=26%  Similarity=0.446  Sum_probs=29.5

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +++++++|.| .||||.++++.|+..|. ++.++|..
T Consensus         4 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~   39 (273)
T PRK08278          4 LSGKTLFITGASRGIGLAIALRAARDGA-NIVIAAKT   39 (273)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecc
Confidence            5677899998 69999999999999997 67777644

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=84.96  E-value=1.3  Score=46.28  Aligned_cols=32  Identities=38%  Similarity=0.624  Sum_probs=29.0

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCC-CeEEEEeC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGF-QDIHIIDM   44 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gv-g~I~iiD~   44 (563)
                      .||.|||+|.+|+.++-.|+..|+ .++.++|.
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~   33 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDI   33 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEEC
Confidence            379999999999999999999996 67999984

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=84.92  E-value=3.6  Score=41.04  Aligned_cols=31  Identities=26%  Similarity=0.400  Sum_probs=26.0

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        13 ~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ++++|.| .||||.++++.|+..|. ++.++|.
T Consensus         1 m~vlItGas~gIG~aia~~l~~~G~-~V~~~~r   32 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLKKGA-RVVISSR   32 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeC
Confidence            3789998 58999999999999997 5777663

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=84.82  E-value=2.4  Score=41.87  Aligned_cols=36  Identities=25%  Similarity=0.365  Sum_probs=30.3

Q ss_pred             HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDT   46 (563)
Q Consensus        10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~   46 (563)
                      +.+++++|.|+ |++|..+++.|+..|. ++.++|.+.
T Consensus         6 ~~~k~vlItGas~~iG~~la~~l~~~G~-~v~~~~~~~   42 (252)
T PRK08220          6 FSGKTVWVTGAAQGIGYAVALAFVEAGA-KVIGFDQAF   42 (252)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecch
Confidence            66788999985 7899999999999996 677777654

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=84.81  E-value=4.7  Score=41.24  Aligned_cols=97  Identities=22%  Similarity=0.296  Sum_probs=58.5

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHH-hCCCeEEEEe-CCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC-CceEEEec
Q 008516           13 AKVLMVG-AGGIGCELLKTLAL-SGFQDIHIID-MDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP-QMSITAHH   88 (563)
Q Consensus        13 ~~VlvvG-aGgiG~ellknLal-~Gvg~I~iiD-~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np-~v~I~~~~   88 (563)
                      .||.|+| +|.+|..+++.+.. .++.-+-++| .+.-.              +|+.    +++ +....+ .+.+  + 
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~--------------~~~~----~~~-~~~~~~~gv~~--~-   59 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSL--------------QGTD----AGE-LAGIGKVGVPV--T-   59 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccc--------------cCCC----HHH-hcCcCcCCcee--e-
Confidence            4899999 59999999999985 4665556666 22100              1211    111 111111 1111  1 


Q ss_pred             cCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccc
Q 008516           89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGF  139 (563)
Q Consensus        89 ~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~  139 (563)
                      .++      ++....+|+||+++ ++++-...-..|.++++|++-+-+ |+
T Consensus        60 ~d~------~~l~~~~DvVIdfT-~p~~~~~~~~~al~~g~~vVigtt-g~  102 (266)
T TIGR00036        60 DDL------EAVETDPDVLIDFT-TPEGVLNHLKFALEHGVRLVVGTT-GF  102 (266)
T ss_pred             CCH------HHhcCCCCEEEECC-ChHHHHHHHHHHHHCCCCEEEECC-CC
Confidence            111      12234689999998 567777778889999999997665 54

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=84.79  E-value=3.5  Score=47.94  Aligned_cols=33  Identities=33%  Similarity=0.555  Sum_probs=27.8

Q ss_pred             cCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        11 ~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .+++++|.| .||||.++++.|+..|. ++.++|.
T Consensus       413 ~gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r  446 (676)
T TIGR02632       413 ARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADL  446 (676)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeC
Confidence            457788988 58999999999999997 6777764

>PLN02852 ferredoxin-NADP+ reductase

Probab=84.76  E-value=4.8  Score=44.97  Aligned_cols=42  Identities=26%  Similarity=0.279  Sum_probs=33.0

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHH--hCCCeEEEEeCCccCcccCcc
Q 008516           11 KGAKVLMVGAGGIGCELLKTLAL--SGFQDIHIIDMDTIEVSNLNR   54 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal--~Gvg~I~iiD~D~Ve~sNLnR   54 (563)
                      ...+|+|||+|.-|.+.+..|++  .|. +++|+|... .+-.+.|
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~-~Vtv~E~~p-~pgGlvr   68 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGA-RVDIIERLP-TPFGLVR   68 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCC-eEEEEecCC-CCcceEe
Confidence            35789999999999999999997  564 799999665 2344545

>PRK08818 prephenate dehydrogenase; Provisional

Probab=84.76  E-value=3.7  Score=44.15  Aligned_cols=35  Identities=26%  Similarity=0.164  Sum_probs=28.2

Q ss_pred             HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +.+.+|.|||. |.+|..+++.|....-.+|+.+|.
T Consensus         2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~   37 (370)
T PRK08818          2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDP   37 (370)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence            45789999999 999999999998653336777775

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=84.73  E-value=1.3  Score=46.90  Aligned_cols=88  Identities=22%  Similarity=0.237  Sum_probs=57.1

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      .|++++|.|||+|.+|..+++.|...|. ++..+|...-                   +..   ..+       .     
T Consensus       143 ~l~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~~~~-------------------~~~---~~~-------~-----  187 (330)
T PRK12480        143 PVKNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDAYPN-------------------KDL---DFL-------T-----  187 (330)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCChh-------------------Hhh---hhh-------h-----
Confidence            5788999999999999999999998887 6788774320                   000   000       0     


Q ss_pred             cCCCCCcchHhhcccccEEEEccCC-HHHHHHHHHHHHh---cCCCEEEec
Q 008516           89 ANVKDPKFNVEFFKQFNVVLNGLDN-LDARRHVNRLCLA---ADVPLVESG  135 (563)
Q Consensus        89 ~~i~~~~~~~~~~~~~dvVi~alDn-~~ar~~in~~c~~---~~~pli~~g  135 (563)
                        ...  .-.+.++++|+|+.++-. .+.+..+++-...   .+..+|+++
T Consensus       188 --~~~--~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~a  234 (330)
T PRK12480        188 --YKD--SVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAA  234 (330)
T ss_pred             --ccC--CHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcC
Confidence              010  124678899999998754 3456666654433   244556654

>PRK15076 alpha-galactosidase; Provisional

Probab=84.71  E-value=3  Score=45.82  Aligned_cols=108  Identities=18%  Similarity=0.260  Sum_probs=60.8

Q ss_pred             CcEEEECCcHHHHHHHH--HHH-HhCC--CeEEEEeCCccCcccCccccCCCCCCCCchHHHH-HHHHHHhhCCCceEEE
Q 008516           13 AKVLMVGAGGIGCELLK--TLA-LSGF--QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKV-ARDAVLKFRPQMSITA   86 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellk--nLa-l~Gv--g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~v-a~~~l~~~np~v~I~~   86 (563)
                      .||.|||+|++|...+-  .++ ..++  ..++++|-|.      .|+          .++.+ +.+.+....+..+|+.
T Consensus         2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~------er~----------~~~~~l~~~~~~~~~~~~~i~~   65 (431)
T PRK15076          2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDP------ERL----------EESEIVARKLAESLGASAKITA   65 (431)
T ss_pred             cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCH------HHH----------HHHHHHHHHHHHhcCCCeEEEE
Confidence            48999999999855443  665 3333  3799998443      010          00121 3333444455566664


Q ss_pred             eccCCCCCcchHhhcccccEEEEccCC--HHHHHHHH-HHHHhcCCCEEEeccccceeeE
Q 008516           87 HHANVKDPKFNVEFFKQFNVVLNGLDN--LDARRHVN-RLCLAADVPLVESGTTGFLGQV  143 (563)
Q Consensus        87 ~~~~i~~~~~~~~~~~~~dvVi~alDn--~~ar~~in-~~c~~~~~pli~~gt~G~~G~v  143 (563)
                      ..+.       .+-++++|+|+.+.-.  .++++..+ ++..++|+----.-+.|..|-.
T Consensus        66 ttD~-------~eal~dADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~  118 (431)
T PRK15076         66 TTDR-------REALQGADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIM  118 (431)
T ss_pred             ECCH-------HHHhCCCCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchh
Confidence            3221       3557899999997644  34455344 5677888741112455655533

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=84.66  E-value=1.1  Score=47.21  Aligned_cols=35  Identities=23%  Similarity=0.262  Sum_probs=31.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTI   47 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~V   47 (563)
                      ...|+|||+|.+|+.+|..|++.|. +++|+|.+..
T Consensus         3 ~~dv~IIGgGi~G~s~A~~L~~~g~-~V~lie~~~~   37 (376)
T PRK11259          3 RYDVIVIGLGSMGSAAGYYLARRGL-RVLGLDRFMP   37 (376)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-eEEEEecccC
Confidence            4579999999999999999999996 7999998764

>PRK06914 short chain dehydrogenase; Provisional

Probab=84.65  E-value=3.6  Score=41.45  Aligned_cols=34  Identities=18%  Similarity=0.237  Sum_probs=27.2

Q ss_pred             cCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        11 ~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ++++++|.| .|++|..+++.|+..|. ++.+++.+
T Consensus         2 ~~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~   36 (280)
T PRK06914          2 NKKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRN   36 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCC
Confidence            456788888 58999999999999986 56776644

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=84.64  E-value=1.3  Score=46.76  Aligned_cols=36  Identities=36%  Similarity=0.429  Sum_probs=31.2

Q ss_pred             HHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEe
Q 008516            7 LEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus         7 q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      .+.|++++|.|||+|.+|..++++|..+|+ ++.+.+
T Consensus        12 ~~~L~gktIgIIG~GsmG~AlA~~L~~sG~-~Vvv~~   47 (330)
T PRK05479         12 LSLIKGKKVAIIGYGSQGHAHALNLRDSGV-DVVVGL   47 (330)
T ss_pred             hhhhCCCEEEEEeeHHHHHHHHHHHHHCCC-EEEEEE
Confidence            567899999999999999999999999998 455543

>TIGR00518 alaDH alanine dehydrogenase

Probab=84.60  E-value=1.2  Score=47.75  Aligned_cols=35  Identities=23%  Similarity=0.452  Sum_probs=31.4

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +...+|+|+|+|++|..+++.+..+|. +++++|.+
T Consensus       165 l~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~  199 (370)
T TIGR00518       165 VEPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDIN  199 (370)
T ss_pred             CCCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence            466889999999999999999999998 69999854

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=84.59  E-value=5  Score=42.73  Aligned_cols=92  Identities=15%  Similarity=0.295  Sum_probs=57.3

Q ss_pred             cCCcEEEEC-CcHHHHHHHHHHHHhCCC--eEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516           11 KGAKVLMVG-AGGIGCELLKTLALSGFQ--DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus        11 ~~~~VlvvG-aGgiG~ellknLal~Gvg--~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      ...||.|+| .|.+|.|+++.|...+.-  ++..+.               ..+..|+.=..        ...++.+.  
T Consensus         6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~la---------------s~rsaGk~~~~--------~~~~~~v~--   60 (344)
T PLN02383          6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLA---------------SARSAGKKVTF--------EGRDYTVE--   60 (344)
T ss_pred             CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEE---------------ccCCCCCeeee--------cCceeEEE--
Confidence            356899999 578899999999986654  444432               22233432211        01111111  


Q ss_pred             ccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEec
Q 008516           88 HANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG  135 (563)
Q Consensus        88 ~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~g  135 (563)
                        .+     +.+-+.++|+|+.|+.+-.++.+.-+. .+.+..+||.+
T Consensus        61 --~~-----~~~~~~~~D~vf~a~p~~~s~~~~~~~-~~~g~~VIDlS  100 (344)
T PLN02383         61 --EL-----TEDSFDGVDIALFSAGGSISKKFGPIA-VDKGAVVVDNS  100 (344)
T ss_pred             --eC-----CHHHHcCCCEEEECCCcHHHHHHHHHH-HhCCCEEEECC
Confidence              11     122347899999999988777777654 45788899865

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=84.58  E-value=4.3  Score=43.17  Aligned_cols=39  Identities=13%  Similarity=0.204  Sum_probs=29.4

Q ss_pred             HhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccc
Q 008516           98 VEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT  137 (563)
Q Consensus        98 ~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~  137 (563)
                      .+.+.+.|+|++++.....+.. ...+.++|+++|+.+..
T Consensus        73 ~el~~~vDVVIdaT~~~~~~e~-a~~~~~aGk~VI~~~~~  111 (341)
T PRK04207         73 EDLLEKADIVVDATPGGVGAKN-KELYEKAGVKAIFQGGE  111 (341)
T ss_pred             hHhhccCCEEEECCCchhhHHH-HHHHHHCCCEEEEcCCC
Confidence            3456789999999987655554 45778889999998753

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=84.56  E-value=6.8  Score=39.93  Aligned_cols=29  Identities=38%  Similarity=0.700  Sum_probs=24.4

Q ss_pred             cEEEEC-CcHHHHHHHHHHHHhCCCeEEEEe
Q 008516           14 KVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        14 ~VlvvG-aGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      +|+|.| .|.+|..+++.|...|. +++++|
T Consensus         1 kvlV~GatG~iG~~l~~~l~~~g~-~V~~~~   30 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLESGH-EVVVLD   30 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHhCCC-eEEEEe
Confidence            688997 69999999999999997 466665

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=84.49  E-value=2.7  Score=43.83  Aligned_cols=68  Identities=21%  Similarity=0.293  Sum_probs=45.5

Q ss_pred             EECCcHHHHHHHHHHHHhCC-CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC----CCceEEEeccCC
Q 008516           17 MVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR----PQMSITAHHANV   91 (563)
Q Consensus        17 vvGaGgiG~ellknLal~Gv-g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~n----p~v~I~~~~~~i   91 (563)
                      |||+|.+|+.++-.|++.|+ ++|.|+|-                   -+.|++..+.-+.+..    .+++|..  +  
T Consensus         1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di-------------------~~~~~~g~a~Dl~~~~~~~~~~~~i~~--~--   57 (299)
T TIGR01771         1 IIGAGNVGSSTAFALLNQGIADEIVLIDI-------------------NKDKAEGEAMDLQHAASFLPTPKKIRS--G--   57 (299)
T ss_pred             CCCcCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CCChhhHHHHHHHHhhcccCCCeEEec--C--
Confidence            68999999999999999998 57999873                   2234444444444432    2233331  1  


Q ss_pred             CCCcchHhhcccccEEEEccC
Q 008516           92 KDPKFNVEFFKQFNVVLNGLD  112 (563)
Q Consensus        92 ~~~~~~~~~~~~~dvVi~alD  112 (563)
                           +.+-++++|+||.+..
T Consensus        58 -----~~~~~~daDivVitag   73 (299)
T TIGR01771        58 -----DYSDCKDADLVVITAG   73 (299)
T ss_pred             -----CHHHHCCCCEEEECCC
Confidence                 2356899999998654

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=84.48  E-value=3.4  Score=43.29  Aligned_cols=33  Identities=30%  Similarity=0.445  Sum_probs=29.4

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCCC-eEEEEeCC
Q 008516           13 AKVLMVGA-GGIGCELLKTLALSGFQ-DIHIIDMD   45 (563)
Q Consensus        13 ~~VlvvGa-GgiG~ellknLal~Gvg-~I~iiD~D   45 (563)
                      .||.|+|+ |.+|..++..|+..|.. +++++|.+
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~   35 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRP   35 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECc
Confidence            48999998 99999999999999974 79999963

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PRK06128 oxidoreductase; Provisional

Probab=84.34  E-value=4.2  Score=41.76  Aligned_cols=34  Identities=32%  Similarity=0.481  Sum_probs=28.3

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEe
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      +|++++++|.| .||||.++++.|+..|. ++.+++
T Consensus        52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~   86 (300)
T PRK06128         52 RLQGRKALITGADSGIGRATAIAFAREGA-DIALNY   86 (300)
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEe
Confidence            57788999998 59999999999999997 455543

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=84.32  E-value=8.6  Score=40.16  Aligned_cols=114  Identities=18%  Similarity=0.310  Sum_probs=65.2

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCC------CCCCCchHHHHHHHHHHhhCCCceEE
Q 008516           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFR------QSHVGQSKAKVARDAVLKFRPQMSIT   85 (563)
Q Consensus        13 ~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~------~~diGk~Ka~va~~~l~~~np~v~I~   85 (563)
                      ++|||.| +|=|||..++.|...|. .+.++|+    .+|=+|..+-+      ..|+.-  .+.+.+.+.+.+|+.-|+
T Consensus         1 ~~iLVtGGAGYIGSHtv~~Ll~~G~-~vvV~DN----L~~g~~~~v~~~~~~f~~gDi~D--~~~L~~vf~~~~idaViH   73 (329)
T COG1087           1 MKVLVTGGAGYIGSHTVRQLLKTGH-EVVVLDN----LSNGHKIALLKLQFKFYEGDLLD--RALLTAVFEENKIDAVVH   73 (329)
T ss_pred             CeEEEecCcchhHHHHHHHHHHCCC-eEEEEec----CCCCCHHHhhhccCceEEecccc--HHHHHHHHHhcCCCEEEE
Confidence            4788885 99999999999999997 5777773    34444444332      223332  234555555666654443


Q ss_pred             Eecc-CCCCC-cchHhhcccccEEEEccCCHHHHHHHHHHHHhcCC-CEEEeccccceee
Q 008516           86 AHHA-NVKDP-KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADV-PLVESGTTGFLGQ  142 (563)
Q Consensus        86 ~~~~-~i~~~-~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~-pli~~gt~G~~G~  142 (563)
                      .--. .+.|+ ....+++.+         |+---.-+-+.|+++++ .+|.|.|...+|.
T Consensus        74 FAa~~~VgESv~~Pl~Yy~N---------Nv~gTl~Ll~am~~~gv~~~vFSStAavYG~  124 (329)
T COG1087          74 FAASISVGESVQNPLKYYDN---------NVVGTLNLIEAMLQTGVKKFIFSSTAAVYGE  124 (329)
T ss_pred             CccccccchhhhCHHHHHhh---------chHhHHHHHHHHHHhCCCEEEEecchhhcCC
Confidence            2111 11111 112334432         33333334455666665 6888988888775

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=84.29  E-value=2.8  Score=45.71  Aligned_cols=35  Identities=26%  Similarity=0.322  Sum_probs=30.6

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +++++|+|+|.|++|-.+++.|+..|. .+++.|.+
T Consensus         3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~-~V~~~d~~   37 (447)
T PRK02472          3 YQNKKVLVLGLAKSGYAAAKLLHKLGA-NVTVNDGK   37 (447)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            467889999999999999999999997 68887744

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=84.24  E-value=2.2  Score=42.37  Aligned_cols=36  Identities=28%  Similarity=0.508  Sum_probs=30.5

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDT   46 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~   46 (563)
                      +.+++++|.| .|+||.++++.|+..|. ++.++|.+.
T Consensus         4 l~~~~vlItGas~~iG~~ia~~l~~~G~-~v~~~~r~~   40 (257)
T PRK07067          4 LQGKVALLTGAASGIGEAVAERYLAEGA-RVVIADIKP   40 (257)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEcCCH
Confidence            5678899998 59999999999999997 577877654

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=83.97  E-value=3.6  Score=46.59  Aligned_cols=34  Identities=24%  Similarity=0.429  Sum_probs=30.4

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .+.+|+|||+|.+|-..+..|++.|. +++++|..
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~  169 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAG  169 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecC
Confidence            46789999999999999999999998 59999854

>PRK08374 homoserine dehydrogenase; Provisional

Probab=83.93  E-value=6.4  Score=41.77  Aligned_cols=109  Identities=17%  Similarity=0.226  Sum_probs=60.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHHH--------hCCC--eEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516           12 GAKVLMVGAGGIGCELLKTLAL--------SGFQ--DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal--------~Gvg--~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~   81 (563)
                      ..+|.|+|+|.+|..+++.|..        .|+.  -+.+.|.+         -.+|.++.+.-.+.   .+..++... 
T Consensus         2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~---------~~~~~~~Gid~~~l---~~~~~~~~~-   68 (336)
T PRK08374          2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTS---------GTIWLPEDIDLREA---KEVKENFGK-   68 (336)
T ss_pred             eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCC---------ccccCCCCCChHHH---HHhhhccCc-
Confidence            4689999999999999999876        6743  23344532         12344444433332   222222111 


Q ss_pred             ceEEEeccCCC-CCcchHhhc--ccccEEEEccCCHHHHHHHHHHHHhcCCCEEEecc
Q 008516           82 MSITAHHANVK-DPKFNVEFF--KQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGT  136 (563)
Q Consensus        82 v~I~~~~~~i~-~~~~~~~~~--~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt  136 (563)
                        +..+..+.. .....++++  ...|+||+++....++.+ -..+...++++|-+..
T Consensus        69 --~~~~~~~~~~~~~~~~ell~~~~~DVvVd~t~~~~a~~~-~~~al~~G~~VVtanK  123 (336)
T PRK08374         69 --LSNWGNDYEVYNFSPEEIVEEIDADIVVDVTNDKNAHEW-HLEALKEGKSVVTSNK  123 (336)
T ss_pred             --hhhccccccccCCCHHHHHhcCCCCEEEECCCcHHHHHH-HHHHHhhCCcEEECCH
Confidence              111110000 001123555  478999999976555544 4566788999887653

>PLN02928 oxidoreductase family protein

Probab=83.91  E-value=1.2  Score=47.35  Aligned_cols=35  Identities=31%  Similarity=0.472  Sum_probs=30.9

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .|.+++|.|||.|.||.++++.|...|. ++..+|.
T Consensus       156 ~l~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr  190 (347)
T PLN02928        156 TLFGKTVFILGYGAIGIELAKRLRPFGV-KLLATRR  190 (347)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECC
Confidence            4788999999999999999999998887 6777764

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=83.90  E-value=3.9  Score=40.73  Aligned_cols=35  Identities=29%  Similarity=0.452  Sum_probs=29.0

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ++.+++|+|.| .||||..+++.|+..|. ++.+++.
T Consensus        12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~   47 (258)
T PRK06935         12 SLDGKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTH   47 (258)
T ss_pred             cCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            46788999998 58999999999999997 4666654

>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes

Probab=83.89  E-value=5.9  Score=41.34  Aligned_cols=39  Identities=23%  Similarity=0.460  Sum_probs=31.2

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCC--eEEEEeCCccCccc
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQ--DIHIIDMDTIEVSN   51 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg--~I~iiD~D~Ve~sN   51 (563)
                      .+|.|||.||-||-++..|.+.|+.  .+..+|.|.-.+..
T Consensus         1 ~~i~viGvGg~G~n~v~~l~~~~~~~~~~~a~ntD~~~L~~   41 (304)
T cd02201           1 AKIKVIGVGGGGGNAVNRMIESGLEGVEFIAANTDAQALAK   41 (304)
T ss_pred             CeEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHHHHhc
Confidence            3789999999999999999999986  45667777644443

FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.

>PRK07454 short chain dehydrogenase; Provisional

Probab=83.88  E-value=5.2  Score=39.27  Aligned_cols=32  Identities=28%  Similarity=0.523  Sum_probs=26.9

Q ss_pred             CCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           12 GAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        12 ~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .++++|.|+ |++|..+++.|+..|. ++.++|.
T Consensus         6 ~k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r   38 (241)
T PRK07454          6 MPRALITGASSGIGKATALAFAKAGW-DLALVAR   38 (241)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            357889984 9999999999999997 6887764

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=83.86  E-value=4  Score=40.98  Aligned_cols=33  Identities=15%  Similarity=0.338  Sum_probs=28.2

Q ss_pred             HcCCcEEEECC---cHHHHHHHHHHHHhCCCeEEEEe
Q 008516           10 IKGAKVLMVGA---GGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        10 L~~~~VlvvGa---GgiG~ellknLal~Gvg~I~iiD   43 (563)
                      +.++.++|.|+   +|||.++++.|+..|. ++.+++
T Consensus         5 ~~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~   40 (257)
T PRK08594          5 LEGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTY   40 (257)
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEec
Confidence            56788999997   5999999999999997 576665

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=83.83  E-value=1.6  Score=45.05  Aligned_cols=35  Identities=26%  Similarity=0.429  Sum_probs=31.4

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCc
Q 008516           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEV   49 (563)
Q Consensus        14 ~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~   49 (563)
                      .|+|||+|-+|+.+|-.|++.|. +++|+|.+.+.-
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G~-~V~l~e~~~~~~   35 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRGH-SVTLLERGDIGS   35 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTTS-EEEEEESSSTTS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-eEEEEeeccccc
Confidence            48999999999999999999999 899999885543

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=83.82  E-value=14  Score=36.24  Aligned_cols=94  Identities=20%  Similarity=0.335  Sum_probs=57.9

Q ss_pred             EEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCCC
Q 008516           15 VLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD   93 (563)
Q Consensus        15 VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~~   93 (563)
                      |+|+|+ |.+|..++..|...|+. ++++               .|..     ++. ..+.++.  +++++.  ..+..+
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~-V~~l---------------~R~~-----~~~-~~~~l~~--~g~~vv--~~d~~~   54 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFS-VRAL---------------VRDP-----SSD-RAQQLQA--LGAEVV--EADYDD   54 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGC-EEEE---------------ESSS-----HHH-HHHHHHH--TTTEEE--ES-TT-
T ss_pred             CEEECCccHHHHHHHHHHHhCCCC-cEEE---------------Eecc-----chh-hhhhhhc--ccceEe--ecccCC
Confidence            789996 99999999999997764 5543               2222     111 2233333  355553  444443


Q ss_pred             CcchHhhcccccEEEEccC---C--HHHHHHHHHHHHhcCCCEEEe
Q 008516           94 PKFNVEFFKQFNVVLNGLD---N--LDARRHVNRLCLAADVPLVES  134 (563)
Q Consensus        94 ~~~~~~~~~~~dvVi~alD---n--~~ar~~in~~c~~~~~pli~~  134 (563)
                      ...-.+.+++.|.|+.++.   .  .+....+-+.|.+.++..+--
T Consensus        55 ~~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~  100 (233)
T PF05368_consen   55 PESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVP  100 (233)
T ss_dssp             HHHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEE
T ss_pred             HHHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEEE
Confidence            3334567899999999887   2  334455677788888876643

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=83.79  E-value=3.7  Score=40.99  Aligned_cols=35  Identities=23%  Similarity=0.548  Sum_probs=29.2

Q ss_pred             HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +++++++|.|+ ||||.++++.|+..|. ++.++|.+
T Consensus         4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~   39 (263)
T PRK06200          4 LHGQVALITGGGSGIGRALVERFLAEGA-RVAVLERS   39 (263)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            56788999985 7999999999999997 57777643

>PLN00016 RNA-binding protein; Provisional

Probab=83.76  E-value=4.7  Score=43.06  Aligned_cols=115  Identities=17%  Similarity=0.254  Sum_probs=64.6

Q ss_pred             HHHcCCcEEEE----CC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCc
Q 008516            8 EAIKGAKVLMV----GA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQM   82 (563)
Q Consensus         8 ~kL~~~~Vlvv----Ga-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v   82 (563)
                      .....++|+|+    |+ |-+|..+++.|...|. ++++++.+.-....+.     . ...     .-. ..+.  .++ 
T Consensus        48 ~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~-~V~~l~R~~~~~~~~~-----~-~~~-----~~~-~~l~--~~~-  111 (378)
T PLN00016         48 AAVEKKKVLIVNTNSGGHAFIGFYLAKELVKAGH-EVTLFTRGKEPSQKMK-----K-EPF-----SRF-SELS--SAG-  111 (378)
T ss_pred             cccccceEEEEeccCCCceeEhHHHHHHHHHCCC-EEEEEecCCcchhhhc-----c-Cch-----hhh-hHhh--hcC-
Confidence            34566789999    75 8899999999999995 6888775432110000     0 000     000 0111  112 


Q ss_pred             eEEEeccCCCCCcchHhhc--ccccEEEEccC-CHHHHHHHHHHHHhcCC-CEEEeccccceee
Q 008516           83 SITAHHANVKDPKFNVEFF--KQFNVVLNGLD-NLDARRHVNRLCLAADV-PLVESGTTGFLGQ  142 (563)
Q Consensus        83 ~I~~~~~~i~~~~~~~~~~--~~~dvVi~alD-n~~ar~~in~~c~~~~~-pli~~gt~G~~G~  142 (563)
                       ++....++.+   -.+.+  .++|+|+++.. +...-..+-+.|.+.++ .+|..++.|.+|.
T Consensus       112 -v~~v~~D~~d---~~~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~SS~~vyg~  171 (378)
T PLN00016        112 -VKTVWGDPAD---VKSKVAGAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCSSAGVYKK  171 (378)
T ss_pred             -ceEEEecHHH---HHhhhccCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEccHhhcCC
Confidence             3333334422   11222  46899998643 23344455667777776 5888887776553

>PRK05884 short chain dehydrogenase; Provisional

Probab=83.70  E-value=3.3  Score=40.68  Aligned_cols=30  Identities=17%  Similarity=0.436  Sum_probs=25.6

Q ss_pred             cEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           14 KVLMVGA-GGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        14 ~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      |++|.|+ ||+|.++++.|+..|. ++.++|.
T Consensus         2 ~vlItGas~giG~~ia~~l~~~g~-~v~~~~r   32 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRNDGH-KVTLVGA   32 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            6899985 8999999999999997 6777664

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=83.61  E-value=1.5  Score=47.26  Aligned_cols=33  Identities=24%  Similarity=0.492  Sum_probs=30.2

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~   46 (563)
                      ++|+|||+|-+|+.+|..|++.|. +++|+|.+.
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~-~V~vle~~~   34 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGY-QVTVFDRHR   34 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence            489999999999999999999996 799999775

>PRK00811 spermidine synthase; Provisional

Probab=83.59  E-value=4.1  Score=42.08  Aligned_cols=35  Identities=26%  Similarity=0.572  Sum_probs=24.1

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~   46 (563)
                      ...+||++|+|+ |.-....|...|+.+++.+|.|.
T Consensus        76 ~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~  110 (283)
T PRK00811         76 NPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDE  110 (283)
T ss_pred             CCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCH
Confidence            357899999875 33333334445899999998665

>PRK10537 voltage-gated potassium channel; Provisional

Probab=83.56  E-value=4.3  Score=44.08  Aligned_cols=88  Identities=11%  Similarity=0.054  Sum_probs=56.0

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      ++.+++|+|.|.+|.++++.|...|. .++++|.|.++      +.                     ...+.  ....++
T Consensus       239 ~k~HvII~G~g~lg~~v~~~L~~~g~-~vvVId~d~~~------~~---------------------~~~g~--~vI~GD  288 (393)
T PRK10537        239 RKDHFIICGHSPLAINTYLGLRQRGQ-AVTVIVPLGLE------HR---------------------LPDDA--DLIPGD  288 (393)
T ss_pred             cCCeEEEECCChHHHHHHHHHHHCCC-CEEEEECchhh------hh---------------------ccCCC--cEEEeC
Confidence            46789999999999999999998886 68888876321      00                     00111  123334


Q ss_pred             CCCC-cchHhhcccccEEEEccCCHHHHHHHHHHHHhcC
Q 008516           91 VKDP-KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAAD  128 (563)
Q Consensus        91 i~~~-~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~  128 (563)
                      .++. .....-.++++.|+.+++|.+.-..+-..+++.+
T Consensus       289 ~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~ivL~ar~l~  327 (393)
T PRK10537        289 SSDSAVLKKAGAARARAILALRDNDADNAFVVLAAKEMS  327 (393)
T ss_pred             CCCHHHHHhcCcccCCEEEEcCCChHHHHHHHHHHHHhC
Confidence            3321 1122235688899998888766666655666554

>PRK12862 malic enzyme; Reviewed

Probab=83.54  E-value=2.1  Score=50.26  Aligned_cols=40  Identities=25%  Similarity=0.444  Sum_probs=35.8

Q ss_pred             HHHcCCcEEEECCcHHHHHHHHHHHHhCCC--eEEEEeCCcc
Q 008516            8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQ--DIHIIDMDTI   47 (563)
Q Consensus         8 ~kL~~~~VlvvGaGgiG~ellknLal~Gvg--~I~iiD~D~V   47 (563)
                      .+|.+.||++.|+|+-|..+++.|...|+.  +|.++|..-+
T Consensus       189 ~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~  230 (763)
T PRK12862        189 KDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGV  230 (763)
T ss_pred             CChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCCe
Confidence            367889999999999999999999999995  8999996654

>TIGR01746 Thioester-redct thioester reductase domain

Probab=83.52  E-value=13  Score=38.46  Aligned_cols=30  Identities=30%  Similarity=0.397  Sum_probs=24.3

Q ss_pred             cEEEECC-cHHHHHHHHHHHHhCC-CeEEEEe
Q 008516           14 KVLMVGA-GGIGCELLKTLALSGF-QDIHIID   43 (563)
Q Consensus        14 ~VlvvGa-GgiG~ellknLal~Gv-g~I~iiD   43 (563)
                      +|+|.|+ |.+|..+++.|...|- .++..+.
T Consensus         1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~   32 (367)
T TIGR01746         1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLV   32 (367)
T ss_pred             CEEEeccchHHHHHHHHHHHhCCCCCEEEEEE
Confidence            5889996 9999999999999984 3566654

It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=83.51  E-value=10  Score=40.33  Aligned_cols=72  Identities=18%  Similarity=0.271  Sum_probs=47.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i   91 (563)
                      ..+|+|+|+||+|.-.++....+| .+++.+|                   ++..|.+.|++.-.    +.-|.....+ 
T Consensus       167 G~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~-------------------~~~~K~e~a~~lGA----d~~i~~~~~~-  221 (339)
T COG1064         167 GKWVAVVGAGGLGHMAVQYAKAMG-AEVIAIT-------------------RSEEKLELAKKLGA----DHVINSSDSD-  221 (339)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcC-CeEEEEe-------------------CChHHHHHHHHhCC----cEEEEcCCch-
Confidence            578999999999999999999899 6777765                   56677766655422    2222221111 


Q ss_pred             CCCcchHhhcccccEEEEccC
Q 008516           92 KDPKFNVEFFKQFNVVLNGLD  112 (563)
Q Consensus        92 ~~~~~~~~~~~~~dvVi~alD  112 (563)
                          .....-+.+|+|+++..
T Consensus       222 ----~~~~~~~~~d~ii~tv~  238 (339)
T COG1064         222 ----ALEAVKEIADAIIDTVG  238 (339)
T ss_pred             ----hhHHhHhhCcEEEECCC
Confidence                11222233999999887

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=83.49  E-value=4.7  Score=40.26  Aligned_cols=34  Identities=29%  Similarity=0.560  Sum_probs=27.9

Q ss_pred             HHHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEE
Q 008516            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHII   42 (563)
Q Consensus         8 ~kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~ii   42 (563)
                      ..|++++++|.| .||||.++++.|+..|.. +.++
T Consensus         4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~   38 (260)
T PRK08416          4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGVN-IAFT   38 (260)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEE
Confidence            346788999998 589999999999999984 5554

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=83.46  E-value=5  Score=41.62  Aligned_cols=31  Identities=26%  Similarity=0.512  Sum_probs=27.5

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        14 ~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +|.+||+|-+|..++++|...|. ++++.|.+
T Consensus         2 ~Ig~IGlG~MG~~ma~~L~~~G~-~v~v~~~~   32 (292)
T PRK15059          2 KLGFIGLGIMGTPMAINLARAGH-QLHVTTIG   32 (292)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            69999999999999999999997 67787754

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=83.43  E-value=1.1  Score=48.35  Aligned_cols=100  Identities=17%  Similarity=0.241  Sum_probs=66.3

Q ss_pred             HHHcCCcEEEECCcHHHHHHHHHHHHhCCC--eEEEEeCCccCcccCccccCCCC-CC--CCchHHHHHHHHHHhhCCCc
Q 008516            8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQ--DIHIIDMDTIEVSNLNRQFLFRQ-SH--VGQSKAKVARDAVLKFRPQM   82 (563)
Q Consensus         8 ~kL~~~~VlvvGaGgiG~ellknLal~Gvg--~I~iiD~D~Ve~sNLnRqfLf~~-~d--iGk~Ka~va~~~l~~~np~v   82 (563)
                      ++|++.||++.|+|+-|+.+++.|..+|+.  +|.++|.--+         ++.. +|  .++.|.+.+.+......   
T Consensus       195 k~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~---------l~~~r~~~~~~~~k~~~a~~~~~~~~---  262 (432)
T COG0281         195 KKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGL---------LYDGREDLTMNQKKYAKAIEDTGERT---  262 (432)
T ss_pred             CCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCc---------ccCCCcccccchHHHHHHHhhhcccc---
Confidence            468899999999999999999999999998  9999996543         3322 23  46777766554332222   


Q ss_pred             eEEEeccCCCCCcchHhhcccccEEEEccCC-HHHHHHHHHHHHhcCCCEEEecc
Q 008516           83 SITAHHANVKDPKFNVEFFKQFNVVLNGLDN-LDARRHVNRLCLAADVPLVESGT  136 (563)
Q Consensus        83 ~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn-~~ar~~in~~c~~~~~pli~~gt  136 (563)
                      .              ..-+.+.|+.|.+... .=...++.+|+..   |+|.+-+
T Consensus       263 ~--------------~~~~~~adv~iG~S~~G~~t~e~V~~Ma~~---PiIfala  300 (432)
T COG0281         263 L--------------DLALAGADVLIGVSGVGAFTEEMVKEMAKH---PIIFALA  300 (432)
T ss_pred             c--------------cccccCCCEEEEcCCCCCcCHHHHHHhccC---CEEeecC
Confidence            0              1135677888776543 2234455666543   7776654

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=83.35  E-value=1.4  Score=46.30  Aligned_cols=32  Identities=41%  Similarity=0.696  Sum_probs=28.6

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .||.|||+|++|+.++..|+..|. +++++|.+
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~-~V~~~~r~   34 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGA-DVTLIGRA   34 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCC-cEEEEecH
Confidence            589999999999999999999996 68888753

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=83.35  E-value=2.6  Score=46.46  Aligned_cols=38  Identities=26%  Similarity=0.413  Sum_probs=33.1

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccC
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIE   48 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve   48 (563)
                      ..+++|+|+|.|..|..+++.|...| ..+++.|.+.-.
T Consensus         5 ~~~~kv~V~GLG~sG~a~a~~L~~~G-~~v~v~D~~~~~   42 (448)
T COG0771           5 FQGKKVLVLGLGKSGLAAARFLLKLG-AEVTVSDDRPAP   42 (448)
T ss_pred             ccCCEEEEEecccccHHHHHHHHHCC-CeEEEEcCCCCc
Confidence            44899999999999999999999999 479998866554

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=83.35  E-value=2.9  Score=43.66  Aligned_cols=77  Identities=10%  Similarity=0.242  Sum_probs=55.5

Q ss_pred             HHcCCcEEEECCc-HHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516            9 AIKGAKVLMVGAG-GIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus         9 kL~~~~VlvvGaG-giG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      .+.+++|.|||.| -+|..++.+|...|. .+++.+..+-                                        
T Consensus       156 ~l~Gk~V~vIG~s~ivG~PmA~~L~~~ga-tVtv~~~~t~----------------------------------------  194 (301)
T PRK14194        156 DLTGKHAVVIGRSNIVGKPMAALLLQAHC-SVTVVHSRST----------------------------------------  194 (301)
T ss_pred             CCCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEECCCCC----------------------------------------
Confidence            4788999999996 899999999999996 6777653320                                        


Q ss_pred             ccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccc
Q 008516           88 HANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT  137 (563)
Q Consensus        88 ~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~  137 (563)
                              ...+..+++|+||.++.....   +..-..+.|.-+||.|+.
T Consensus       195 --------~l~e~~~~ADIVIsavg~~~~---v~~~~ik~GaiVIDvgin  233 (301)
T PRK14194        195 --------DAKALCRQADIVVAAVGRPRL---IDADWLKPGAVVIDVGIN  233 (301)
T ss_pred             --------CHHHHHhcCCEEEEecCChhc---ccHhhccCCcEEEEeccc
Confidence                    023556788999999876542   223335667778888865

>PRK08267 short chain dehydrogenase; Provisional

Probab=83.30  E-value=3.9  Score=40.73  Aligned_cols=31  Identities=26%  Similarity=0.501  Sum_probs=25.8

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        13 ~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ++++|.| .|+||.++++.|+..|. ++.++|.
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~-~V~~~~r   33 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGW-RVGAYDI   33 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeC
Confidence            4689998 68999999999999996 5777653

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=83.25  E-value=4.6  Score=43.06  Aligned_cols=90  Identities=18%  Similarity=0.442  Sum_probs=57.2

Q ss_pred             CCcEEEECC-cHHHHHHHHHHHH-hCC--CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC-CCceEEE
Q 008516           12 GAKVLMVGA-GGIGCELLKTLAL-SGF--QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR-PQMSITA   86 (563)
Q Consensus        12 ~~~VlvvGa-GgiG~ellknLal-~Gv--g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~n-p~v~I~~   86 (563)
                      +.||.|||+ |.+|.|+++.|.. ..+  +++.++.               ..+..|+.=         .+. .++.++.
T Consensus         5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~a---------------S~~saGk~~---------~~~~~~l~v~~   60 (347)
T PRK06728          5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLS---------------SKRSAGKTV---------QFKGREIIIQE   60 (347)
T ss_pred             CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEE---------------CcccCCCCe---------eeCCcceEEEe
Confidence            468999996 8899999999994 554  3455543               223445431         111 1122221


Q ss_pred             eccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEec
Q 008516           87 HHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG  135 (563)
Q Consensus        87 ~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~g  135 (563)
                      .         +.+-|++.|+|+.|+.+-.++.+.... .+.+.++||.+
T Consensus        61 ~---------~~~~~~~~Divf~a~~~~~s~~~~~~~-~~~G~~VID~S   99 (347)
T PRK06728         61 A---------KINSFEGVDIAFFSAGGEVSRQFVNQA-VSSGAIVIDNT   99 (347)
T ss_pred             C---------CHHHhcCCCEEEECCChHHHHHHHHHH-HHCCCEEEECc
Confidence            1         223358899999999887777666554 56788899865

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=83.23  E-value=5.5  Score=43.12  Aligned_cols=76  Identities=17%  Similarity=0.128  Sum_probs=49.5

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCCCe------EEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC-CCc-e
Q 008516           13 AKVLMVGA-GGIGCELLKTLALSGFQD------IHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR-PQM-S   83 (563)
Q Consensus        13 ~~VlvvGa-GgiG~ellknLal~Gvg~------I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~n-p~v-~   83 (563)
                      .||.|+|+ |.+|+.++-.|+..|+-.      |+|+|.                 |+-+.|++.-+--+.+-. |.. +
T Consensus        45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~di-----------------D~~~~~a~g~a~DL~d~a~~~~~~  107 (387)
T TIGR01757        45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGS-----------------ERSKEALEGVAMELEDSLYPLLRE  107 (387)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEecc-----------------CccchhhhHHHHHHHHhhhhhcCc
Confidence            47999999 999999999999999843      666653                 344455555454444433 322 2


Q ss_pred             EEEeccCCCCCcchHhhcccccEEEEccC
Q 008516           84 ITAHHANVKDPKFNVEFFKQFNVVLNGLD  112 (563)
Q Consensus        84 I~~~~~~i~~~~~~~~~~~~~dvVi~alD  112 (563)
                      +....+       +.+-+++.|+||.+..
T Consensus       108 v~i~~~-------~y~~~kdaDIVVitAG  129 (387)
T TIGR01757       108 VSIGID-------PYEVFEDADWALLIGA  129 (387)
T ss_pred             eEEecC-------CHHHhCCCCEEEECCC
Confidence            221111       2356899999998654

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=83.21  E-value=1.8  Score=45.83  Aligned_cols=41  Identities=20%  Similarity=0.298  Sum_probs=36.1

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccC
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNL   52 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNL   52 (563)
                      .+.+|+|||+|-+|+..+-.|++.|. +++++|.+.+...+-
T Consensus         3 ~~~~vvVIGgGi~Gls~A~~La~~G~-~V~vie~~~~~~g~s   43 (387)
T COG0665           3 MKMDVVIIGGGIVGLSAAYYLAERGA-DVTVLEAGEAGGGAA   43 (387)
T ss_pred             CcceEEEECCcHHHHHHHHHHHHcCC-EEEEEecCccCCcch
Confidence            46789999999999999999999999 999999888865433

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=83.16  E-value=4.6  Score=40.43  Aligned_cols=85  Identities=26%  Similarity=0.368  Sum_probs=46.6

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhC---CCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           13 AKVLMVGAGGIGCELLKTLALSG---FQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~G---vg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      .+|.|||||+||..+++.+- -|   +.-+.+.|                   -+..|+..+.+.+...-    +    .
T Consensus         1 l~vgiVGcGaIG~~l~e~v~-~~~~~~e~v~v~D-------------------~~~ek~~~~~~~~~~~~----~----s   52 (255)
T COG1712           1 LKVGIVGCGAIGKFLLELVR-DGRVDFELVAVYD-------------------RDEEKAKELEASVGRRC----V----S   52 (255)
T ss_pred             CeEEEEeccHHHHHHHHHHh-cCCcceeEEEEec-------------------CCHHHHHHHHhhcCCCc----c----c
Confidence            37899999999999997654 44   43444444                   33445444443332211    1    1


Q ss_pred             CCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEE
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLV  132 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli  132 (563)
                      +      -+++....|+|+.|-.-...|.|+-+ .++.++.+|
T Consensus        53 ~------ide~~~~~DlvVEaAS~~Av~e~~~~-~L~~g~d~i   88 (255)
T COG1712          53 D------IDELIAEVDLVVEAASPEAVREYVPK-ILKAGIDVI   88 (255)
T ss_pred             c------HHHHhhccceeeeeCCHHHHHHHhHH-HHhcCCCEE
Confidence            1      13445677777777654444444333 345555554

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=83.15  E-value=1.5  Score=48.72  Aligned_cols=33  Identities=33%  Similarity=0.568  Sum_probs=29.9

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEe
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      +.+++++|+|+||+|..+++.|+..|. +++++|
T Consensus       330 ~~~k~vlIiGaGgiG~aia~~L~~~G~-~V~i~~  362 (477)
T PRK09310        330 LNNQHVAIVGAGGAAKAIATTLARAGA-ELLIFN  362 (477)
T ss_pred             cCCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEe
Confidence            567899999999999999999999998 888875

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=83.13  E-value=6.7  Score=33.50  Aligned_cols=77  Identities=21%  Similarity=0.299  Sum_probs=49.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i   91 (563)
                      +.+|+-+|||. |......+.+.+-.+++-+|.+.                   .-.+.+++++.+....-+|+.+..++
T Consensus         2 ~~~vLDlGcG~-G~~~~~l~~~~~~~~v~gvD~s~-------------------~~~~~a~~~~~~~~~~~~i~~~~~d~   61 (112)
T PF12847_consen    2 GGRVLDLGCGT-GRLSIALARLFPGARVVGVDISP-------------------EMLEIARERAAEEGLSDRITFVQGDA   61 (112)
T ss_dssp             TCEEEEETTTT-SHHHHHHHHHHTTSEEEEEESSH-------------------HHHHHHHHHHHHTTTTTTEEEEESCC
T ss_pred             CCEEEEEcCcC-CHHHHHHHhcCCCCEEEEEeCCH-------------------HHHHHHHHHHHhcCCCCCeEEEECcc
Confidence            67899999865 44444333344556799888432                   22445666665555566777777776


Q ss_pred             CCCcchHhhcccccEEEEcc
Q 008516           92 KDPKFNVEFFKQFNVVLNGL  111 (563)
Q Consensus        92 ~~~~~~~~~~~~~dvVi~al  111 (563)
                         ....++..+||+|+...
T Consensus        62 ---~~~~~~~~~~D~v~~~~   78 (112)
T PF12847_consen   62 ---EFDPDFLEPFDLVICSG   78 (112)
T ss_dssp             ---HGGTTTSSCEEEEEECS
T ss_pred             ---ccCcccCCCCCEEEECC
Confidence               23345667899999865

...

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=83.12  E-value=5.8  Score=43.51  Aligned_cols=32  Identities=22%  Similarity=0.418  Sum_probs=28.4

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +||+|+|+|+.|...++.|...|. .+++.|..
T Consensus         1 ~~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~   32 (459)
T PRK02705          1 AIAHVIGLGRSGIAAARLLKAQGW-EVVVSDRN   32 (459)
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            479999999999999999999997 68888744

>PLN02256 arogenate dehydrogenase

Probab=83.07  E-value=1.6  Score=45.71  Aligned_cols=93  Identities=22%  Similarity=0.219  Sum_probs=57.4

Q ss_pred             HHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516            8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus         8 ~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      .+-+..+|.|||+|.+|..+++.|...|. +++++|.+.                   .+ +.+    .+.  ++.  ..
T Consensus        32 ~~~~~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~~~-------------------~~-~~a----~~~--gv~--~~   82 (304)
T PLN02256         32 EKSRKLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSRSD-------------------YS-DIA----AEL--GVS--FF   82 (304)
T ss_pred             ccCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECcc-------------------HH-HHH----HHc--CCe--ee
Confidence            34466789999999999999999999885 677777321                   01 111    111  111  11


Q ss_pred             ccCCCCCcchHhhc-ccccEEEEccCCHHHHHHHHHHH---HhcCCCEEEecc
Q 008516           88 HANVKDPKFNVEFF-KQFNVVLNGLDNLDARRHVNRLC---LAADVPLVESGT  136 (563)
Q Consensus        88 ~~~i~~~~~~~~~~-~~~dvVi~alDn~~ar~~in~~c---~~~~~pli~~gt  136 (563)
                          .   ...+.. .+.|+|+.|+-.......+.++.   ...+..+++.++
T Consensus        83 ----~---~~~e~~~~~aDvVilavp~~~~~~vl~~l~~~~l~~~~iviDv~S  128 (304)
T PLN02256         83 ----R---DPDDFCEEHPDVVLLCTSILSTEAVLRSLPLQRLKRSTLFVDVLS  128 (304)
T ss_pred             ----C---CHHHHhhCCCCEEEEecCHHHHHHHHHhhhhhccCCCCEEEecCC
Confidence                1   112333 46899999987666666666653   233455777776

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=82.98  E-value=5.6  Score=42.11  Aligned_cols=92  Identities=17%  Similarity=0.272  Sum_probs=55.9

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (563)
Q Consensus        13 ~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i   91 (563)
                      .||+|+| .|.+|.++++.|...|...+.+.=             +.+..+.|+.=.         ++ +.++...  ++
T Consensus         2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~-------------l~s~~~~g~~l~---------~~-g~~i~v~--d~   56 (334)
T PRK14874          2 YNVAVVGATGAVGREMLNILEERNFPVDKLRL-------------LASARSAGKELS---------FK-GKELKVE--DL   56 (334)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcceEEE-------------EEccccCCCeee---------eC-CceeEEe--eC
Confidence            5899999 588999999999987765433220             122233343211         11 1122211  12


Q ss_pred             CCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEec
Q 008516           92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG  135 (563)
Q Consensus        92 ~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~g  135 (563)
                      .     ..-|++.|+||.|+....++.+..+. ...+..+||.+
T Consensus        57 ~-----~~~~~~vDvVf~A~g~g~s~~~~~~~-~~~G~~VIDlS   94 (334)
T PRK14874         57 T-----TFDFSGVDIALFSAGGSVSKKYAPKA-AAAGAVVIDNS   94 (334)
T ss_pred             C-----HHHHcCCCEEEECCChHHHHHHHHHH-HhCCCEEEECC
Confidence            1     12347899999999988888877665 45677777754

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=82.92  E-value=5.4  Score=39.75  Aligned_cols=32  Identities=19%  Similarity=0.379  Sum_probs=26.9

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEE
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHII   42 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~ii   42 (563)
                      +++++++|.| .|+||.++++.|+..|. ++.++
T Consensus         5 ~~~k~~lItGa~~gIG~~ia~~l~~~G~-~vvi~   37 (261)
T PRK08936          5 LEGKVVVITGGSTGLGRAMAVRFGKEKA-KVVIN   37 (261)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEE
Confidence            6788999998 78999999999999996 45454

>PRK12746 short chain dehydrogenase; Provisional

Probab=82.85  E-value=3.7  Score=40.58  Aligned_cols=32  Identities=31%  Similarity=0.499  Sum_probs=26.4

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEE
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHI   41 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~i   41 (563)
                      ++++++++|.| .|+||.++++.|+..|.. +.+
T Consensus         3 ~~~~~~ilItGasg~iG~~la~~l~~~G~~-v~i   35 (254)
T PRK12746          3 NLDGKVALVTGASRGIGRAIAMRLANDGAL-VAI   35 (254)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEE
Confidence            36678999998 789999999999998863 444

>PRK12937 short chain dehydrogenase; Provisional

Probab=82.80  E-value=5.5  Score=38.99  Aligned_cols=32  Identities=25%  Similarity=0.583  Sum_probs=26.6

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEE
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHII   42 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~ii   42 (563)
                      +++++++|.| .|+||..+++.|+..|.. +.++
T Consensus         3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~-v~~~   35 (245)
T PRK12937          3 LSNKVAIVTGASRGIGAAIARRLAADGFA-VAVN   35 (245)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEe
Confidence            4578899998 599999999999999984 4444

>PRK06182 short chain dehydrogenase; Validated

Probab=82.76  E-value=2.7  Score=42.28  Aligned_cols=33  Identities=27%  Similarity=0.390  Sum_probs=27.0

Q ss_pred             cCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           11 KGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        11 ~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ++++++|.|+ ||+|.++++.|+..|. ++.+++.
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r   35 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGY-TVYGAAR   35 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence            4678999995 8999999999999986 5666654

>PLN02494 adenosylhomocysteinase

Probab=82.71  E-value=1.7  Score=48.07  Aligned_cols=36  Identities=19%  Similarity=0.435  Sum_probs=31.9

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~   46 (563)
                      +.+++|+|+|+|.+|..+++.+...|. ++.++|.|.
T Consensus       252 LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp  287 (477)
T PLN02494        252 IAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDP  287 (477)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            578899999999999999999999998 688887654

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=82.70  E-value=6.7  Score=38.70  Aligned_cols=31  Identities=39%  Similarity=0.652  Sum_probs=25.8

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEe
Q 008516           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        12 ~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      ++.++|.| .|+||.++++.|+..|. ++.++|
T Consensus         2 ~k~vlItG~sg~iG~~la~~L~~~g~-~vi~~~   33 (256)
T PRK12745          2 RPVALVTGGRRGIGLGIARALAAAGF-DLAIND   33 (256)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCC-EEEEEe
Confidence            45688887 69999999999999997 566665

>PRK09291 short chain dehydrogenase; Provisional

Probab=82.66  E-value=6.3  Score=38.93  Aligned_cols=31  Identities=29%  Similarity=0.417  Sum_probs=25.1

Q ss_pred             CCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEe
Q 008516           12 GAKVLMVGA-GGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        12 ~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD   43 (563)
                      +++|+|.|+ |+||..+++.|+..|. ++.+++
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~-~v~~~~   33 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGH-NVIAGV   33 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEe
Confidence            457999985 8999999999999996 455544

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=82.60  E-value=2.1  Score=42.35  Aligned_cols=37  Identities=27%  Similarity=0.421  Sum_probs=31.5

Q ss_pred             HHHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         8 ~kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ..+++++|+|.| .|++|..+++.|+..|. ++.++|.+
T Consensus         8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~   45 (247)
T PRK08945          8 DLLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRT   45 (247)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCC
Confidence            467788999997 78899999999999987 77888765

>PRK08862 short chain dehydrogenase; Provisional

Probab=82.59  E-value=4.9  Score=39.71  Aligned_cols=33  Identities=21%  Similarity=0.308  Sum_probs=27.2

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEe
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      +++++++|.| .+|||-++++.|+..|. ++.+++
T Consensus         3 ~~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~   36 (227)
T PRK08862          3 IKSSIILITSAGSVLGRTISCHFARLGA-TLILCD   36 (227)
T ss_pred             CCCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEc
Confidence            5678899998 56799999999999997 466654

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=82.59  E-value=1.7  Score=45.46  Aligned_cols=32  Identities=19%  Similarity=0.426  Sum_probs=27.7

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (563)
Q Consensus        14 ~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~   46 (563)
                      +|.|+|+|++|+.++..|+..|. ++++++.+.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~-~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKI-SVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCC-eEEEEecCH
Confidence            69999999999999999999984 578887543

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=82.59  E-value=3.2  Score=43.30  Aligned_cols=77  Identities=10%  Similarity=0.237  Sum_probs=55.7

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      .+.+++|+||| .|.+|..++.+|...|. .+++.+..+-              +                         
T Consensus       155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~-tVtv~~~rT~--------------~-------------------------  194 (296)
T PRK14188        155 DLSGLNAVVIGRSNLVGKPMAQLLLAANA-TVTIAHSRTR--------------D-------------------------  194 (296)
T ss_pred             CCCCCEEEEEcCCcchHHHHHHHHHhCCC-EEEEECCCCC--------------C-------------------------
Confidence            36889999999 89999999999999886 5777642211              0                         


Q ss_pred             ccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccc
Q 008516           88 HANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT  137 (563)
Q Consensus        88 ~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~  137 (563)
                               -.+..+++|+|+.|+.+..   .+.....+.|.-+|+.|+.
T Consensus       195 ---------l~e~~~~ADIVIsavg~~~---~v~~~~lk~GavVIDvGin  232 (296)
T PRK14188        195 ---------LPAVCRRADILVAAVGRPE---MVKGDWIKPGATVIDVGIN  232 (296)
T ss_pred             ---------HHHHHhcCCEEEEecCChh---hcchheecCCCEEEEcCCc
Confidence                     1345678999999998765   3444445667778888864

>PRK06701 short chain dehydrogenase; Provisional

Probab=82.58  E-value=5.8  Score=40.65  Aligned_cols=36  Identities=33%  Similarity=0.529  Sum_probs=29.5

Q ss_pred             HHHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         8 ~kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ..+++++++|.| .|+||..+++.|+..|. ++.+++.
T Consensus        42 ~~~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r   78 (290)
T PRK06701         42 GKLKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYL   78 (290)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            356678999998 58999999999999997 5667653

>PRK06057 short chain dehydrogenase; Provisional

Probab=82.51  E-value=1.6  Score=43.49  Aligned_cols=36  Identities=28%  Similarity=0.510  Sum_probs=30.7

Q ss_pred             HHcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         9 kL~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +|.+++|+|+|+ |+||..+++.|+..|. ++.++|.+
T Consensus         4 ~~~~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~r~   40 (255)
T PRK06057          4 RLAGRVAVITGGGSGIGLATARRLAAEGA-TVVVGDID   40 (255)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence            477899999996 9999999999999996 57777643

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=82.49  E-value=4.9  Score=39.13  Aligned_cols=28  Identities=32%  Similarity=0.513  Sum_probs=24.3

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQ   37 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg   37 (563)
                      ++.++|+|.| .|++|.++++.|+..|..
T Consensus         4 ~~~~~vlItGasg~iG~~l~~~l~~~g~~   32 (249)
T PRK12825          4 LMGRVALVTGAARGLGRAIALRLARAGAD   32 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCe
Confidence            3457899998 699999999999999985

>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family

Probab=82.47  E-value=2.4  Score=44.66  Aligned_cols=75  Identities=13%  Similarity=0.150  Sum_probs=44.0

Q ss_pred             chhhHHHHHHHHHHHHHHHHHhcCcc---ccceeeecccccccccccccCCCCCCCCcccCCCccEEEEEcCCCCCHHHH
Q 008516          376 AVATTNAIIAGLIVIEAIKVLLKDTD---KYRMTYCLEHITKKMLLMPVEPYEPNKSCYVCSETPLSLEINTSRSKLRDF  452 (563)
Q Consensus       376 AIATTnAiVAGl~vlE~~K~l~~~~~---~~r~~f~~~~~~~~~~~~p~~~~~pn~~C~vC~~~~~~l~i~~~~~TL~~l  452 (563)
                      ++..++++++++++.|++ ++.|..+   .-|-.-++. +....-.   .+-.++|.|++|+.. .++..+...+.-+++
T Consensus       239 v~gp~~giigsl~a~Eai-~i~g~g~~~l~g~ll~id~-~t~~~~~---~~l~k~p~Cp~CG~~-~~~~~~~~~~~~~~~  312 (318)
T TIGR03603       239 LIFPLLNIKKNLVVSEIF-AIGSLGTSKFEGRLLSINL-PTLEIQF---QDILKQSCCSTCGTF-NKIKFEEQNISTRNI  312 (318)
T ss_pred             eehhHHHHHHHHHHHHHH-HHhCCCCcccCCeEEEEEC-CCCeEEE---EecCCCCCCcccCCc-cccchhhhhhhHHHH
Confidence            344577899999999999 8887432   122222221 1111111   122568999999743 234444456777888


Q ss_pred             HHHH
Q 008516          453 VEKI  456 (563)
Q Consensus       453 i~~~  456 (563)
                      ++.+
T Consensus       313 ~~~~  316 (318)
T TIGR03603       313 VKEL  316 (318)
T ss_pred             HHHH
Confidence            7774

Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=82.41  E-value=1.7  Score=45.91  Aligned_cols=33  Identities=30%  Similarity=0.463  Sum_probs=29.9

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 008516           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTI   47 (563)
Q Consensus        14 ~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~V   47 (563)
                      .|+|||+|-+|+.+|..|++.|. +++|+|...+
T Consensus         2 dvvIIGaGi~G~s~A~~La~~g~-~V~l~e~~~~   34 (380)
T TIGR01377         2 DVIVVGAGIMGCFAAYHLAKHGK-KTLLLEQFDL   34 (380)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence            58999999999999999999996 6999998654

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=82.37  E-value=7  Score=40.90  Aligned_cols=100  Identities=13%  Similarity=0.241  Sum_probs=55.5

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhC-CCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSG-FQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~G-vg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      ++.||.|||+|.+|...+..+..+. +.-.-++|.|.                   .+.  ..+..+++  ++.  ....
T Consensus         3 ~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~-------------------es~--gla~A~~~--Gi~--~~~~   57 (302)
T PRK08300          3 SKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDP-------------------ESD--GLARARRL--GVA--TSAE   57 (302)
T ss_pred             CCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCCh-------------------hhH--HHHHHHHc--CCC--cccC
Confidence            4678999999999999888887653 32233444321                   000  00111122  111  1111


Q ss_pred             CCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccc
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT  137 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~  137 (563)
                      .+.+ .....-|.+.|+|++++.+. +-......+..+|+.+|+-...
T Consensus        58 ~ie~-LL~~~~~~dIDiVf~AT~a~-~H~e~a~~a~eaGk~VID~sPA  103 (302)
T PRK08300         58 GIDG-LLAMPEFDDIDIVFDATSAG-AHVRHAAKLREAGIRAIDLTPA  103 (302)
T ss_pred             CHHH-HHhCcCCCCCCEEEECCCHH-HHHHHHHHHHHcCCeEEECCcc
Confidence            1100 00111246799999999874 4455577788999999886544

>PRK06046 alanine dehydrogenase; Validated

Probab=82.30  E-value=6.8  Score=41.27  Aligned_cols=74  Identities=15%  Similarity=0.235  Sum_probs=50.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHH-HhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           12 GAKVLMVGAGGIGCELLKTLA-LSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLa-l~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      ..++.|+|+|+.|...+..|. ..++..+.+.|.+                   ..+++.+++.+++.. .+++.... +
T Consensus       129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~-------------------~~~~~~~~~~~~~~~-~~~v~~~~-~  187 (326)
T PRK06046        129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRT-------------------KSSAEKFVERMSSVV-GCDVTVAE-D  187 (326)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCC-------------------HHHHHHHHHHHHhhc-CceEEEeC-C
Confidence            567999999999999999998 4578888887633                   345666666665432 23443322 1


Q ss_pred             CCCCcchHhhcccccEEEEccCC
Q 008516           91 VKDPKFNVEFFKQFNVVLNGLDN  113 (563)
Q Consensus        91 i~~~~~~~~~~~~~dvVi~alDn  113 (563)
                      +      .+... .|+|++|+-+
T Consensus       188 ~------~~~l~-aDiVv~aTps  203 (326)
T PRK06046        188 I------EEACD-CDILVTTTPS  203 (326)
T ss_pred             H------HHHhh-CCEEEEecCC
Confidence            1      34455 9999999875

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=82.29  E-value=2.6  Score=41.98  Aligned_cols=35  Identities=31%  Similarity=0.496  Sum_probs=29.3

Q ss_pred             HcCCcEEEECCc---HHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           10 IKGAKVLMVGAG---GIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        10 L~~~~VlvvGaG---giG~ellknLal~Gvg~I~iiD~D   45 (563)
                      |+.++|+|.|++   |||..+++.|+..|. ++.+++..
T Consensus         3 l~~k~vlItGas~~~giG~~la~~l~~~G~-~vi~~~r~   40 (256)
T PRK12748          3 LMKKIALVTGASRLNGIGAAVCRRLAAKGI-DIFFTYWS   40 (256)
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHHcCC-cEEEEcCC
Confidence            466789999984   799999999999997 67777643

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=82.22  E-value=1.7  Score=44.67  Aligned_cols=31  Identities=26%  Similarity=0.432  Sum_probs=27.1

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .||+|+|+|++|+.++..|+..|. .+++++.
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r   31 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR   31 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCC-ceEEEec
Confidence            379999999999999999999985 5788763

>PRK08264 short chain dehydrogenase; Validated

Probab=82.14  E-value=1.9  Score=42.16  Aligned_cols=36  Identities=33%  Similarity=0.501  Sum_probs=31.2

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +.+++++|.| .|++|.++++.|+..|..++.+++.+
T Consensus         4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~   40 (238)
T PRK08264          4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARD   40 (238)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecC
Confidence            5678899998 59999999999999998778888754

>PRK07904 short chain dehydrogenase; Provisional

Probab=82.12  E-value=7.9  Score=38.72  Aligned_cols=33  Identities=12%  Similarity=0.280  Sum_probs=25.7

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        12 ~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .++|+|.| .||||.++++.|+..|--++.+++.
T Consensus         8 ~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r   41 (253)
T PRK07904          8 PQTILLLGGTSEIGLAICERYLKNAPARVVLAAL   41 (253)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeC
Confidence            34577877 7899999999999986347777653

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=82.01  E-value=1.8  Score=47.51  Aligned_cols=32  Identities=28%  Similarity=0.425  Sum_probs=28.5

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .+|+|||+|-.|||+|..|++.|+ +++|+++.
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~-~V~LiE~r   32 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGV-PVILYEMR   32 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-cEEEEecc
Confidence            379999999999999999999997 68888854

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=81.94  E-value=5.7  Score=42.52  Aligned_cols=103  Identities=19%  Similarity=0.225  Sum_probs=59.7

Q ss_pred             EEEECCcHHHHHHHHHH--HHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCC
Q 008516           15 VLMVGAGGIGCELLKTL--ALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK   92 (563)
Q Consensus        15 VlvvGaGgiG~ellknL--al~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~   92 (563)
                      |+|||+|.-|..+|..|  +..|. ++.|||...--.-.-+|-..|-..+++.     ..+.+.+..+...|........
T Consensus         2 viIvGaGpAGlslA~~l~~~~~g~-~Vllid~~~~~~~~~~~tW~~~~~~~~~-----~~~~v~~~w~~~~v~~~~~~~~   75 (374)
T PF05834_consen    2 VIIVGAGPAGLSLARRLADARPGL-SVLLIDPKPKPPWPNDRTWCFWEKDLGP-----LDSLVSHRWSGWRVYFPDGSRI   75 (374)
T ss_pred             EEEECCcHHHHHHHHHHHhcCCCC-EEEEEcCCccccccCCcccccccccccc-----hHHHHheecCceEEEeCCCceE
Confidence            78999999999999999  66665 7999997654422333333444555555     3444555555666654333221


Q ss_pred             CCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEE
Q 008516           93 DPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVE  133 (563)
Q Consensus        93 ~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~  133 (563)
                              ......  ..++......++-+.|...++-++.
T Consensus        76 --------~~~~~Y--~~i~~~~f~~~l~~~~~~~~~~~~~  106 (374)
T PF05834_consen   76 --------LIDYPY--CMIDRADFYEFLLERAAAGGVIRLN  106 (374)
T ss_pred             --------Ecccce--EEEEHHHHHHHHHHHhhhCCeEEEc
Confidence                    011121  2345555666666666655554443

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=81.90  E-value=9  Score=44.20  Aligned_cols=35  Identities=29%  Similarity=0.495  Sum_probs=31.0

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~   46 (563)
                      ...+|+|||+|..|-..+..|++.|. +++|+|...
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~  343 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHP  343 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCC
Confidence            47899999999999999999999998 589988543

>PRK06720 hypothetical protein; Provisional

Probab=81.88  E-value=5.9  Score=37.59  Aligned_cols=36  Identities=28%  Similarity=0.447  Sum_probs=29.6

Q ss_pred             HHcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         9 kL~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ++.++.++|.|+ ||||.++++.|+..|. ++.++|.+
T Consensus        13 ~l~gk~~lVTGa~~GIG~aia~~l~~~G~-~V~l~~r~   49 (169)
T PRK06720         13 KLAGKVAIVTGGGIGIGRNTALLLAKQGA-KVIVTDID   49 (169)
T ss_pred             ccCCCEEEEecCCChHHHHHHHHHHHCCC-EEEEEECC
Confidence            467788999986 5799999999999995 68887744

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=81.87  E-value=5.9  Score=39.45  Aligned_cols=33  Identities=27%  Similarity=0.456  Sum_probs=27.5

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEe
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      +.+++++|.| .||||.++++.|+..|. ++.+++
T Consensus         6 l~~k~~lItGas~gIG~aia~~l~~~G~-~vv~~~   39 (251)
T PRK12481          6 LNGKVAIITGCNTGLGQGMAIGLAKAGA-DIVGVG   39 (251)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEec
Confidence            5678889998 78999999999999998 465554

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=81.85  E-value=1.9  Score=44.32  Aligned_cols=33  Identities=33%  Similarity=0.468  Sum_probs=27.3

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~   46 (563)
                      .+|+|||+|..|+.+|..|++.|+. ++|+|.+.
T Consensus         2 ~dV~IvGaG~aGl~~A~~L~~~G~~-v~i~E~~~   34 (356)
T PF01494_consen    2 YDVAIVGAGPAGLAAALALARAGID-VTIIERRP   34 (356)
T ss_dssp             EEEEEE--SHHHHHHHHHHHHTTCE-EEEEESSS
T ss_pred             ceEEEECCCHHHHHHHHHHHhcccc-cccchhcc
Confidence            4799999999999999999999985 88888654

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=81.76  E-value=1.8  Score=46.73  Aligned_cols=35  Identities=26%  Similarity=0.408  Sum_probs=30.6

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .|.+++|.|||+|.||..+++.|...|+ ++...|.
T Consensus       113 ~L~gktvGIIG~G~IG~~vA~~l~a~G~-~V~~~dp  147 (378)
T PRK15438        113 SLHDRTVGIVGVGNVGRRLQARLEALGI-KTLLCDP  147 (378)
T ss_pred             CcCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECC
Confidence            4789999999999999999999999998 5666664

>PRK06841 short chain dehydrogenase; Provisional

Probab=81.75  E-value=2  Score=42.55  Aligned_cols=34  Identities=24%  Similarity=0.530  Sum_probs=29.1

Q ss_pred             HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +.+++|+|.|+ |+||.++++.|+..|. ++.+++.
T Consensus        13 ~~~k~vlItGas~~IG~~la~~l~~~G~-~Vi~~~r   47 (255)
T PRK06841         13 LSGKVAVVTGGASGIGHAIAELFAAKGA-RVALLDR   47 (255)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence            56889999995 9999999999999997 5777664

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=81.73  E-value=1.9  Score=47.67  Aligned_cols=37  Identities=24%  Similarity=0.419  Sum_probs=32.4

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~   46 (563)
                      .|.+++|+|+|.|.+|..+++.|...|. +++++|.|.
T Consensus       251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp  287 (476)
T PTZ00075        251 MIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDP  287 (476)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            3688999999999999999999999998 688887554

>PRK06398 aldose dehydrogenase; Validated

Probab=81.70  E-value=5.2  Score=40.00  Aligned_cols=74  Identities=16%  Similarity=0.253  Sum_probs=45.7

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHH-HHHHHHHHhhCCCceEEE
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKA-KVARDAVLKFRPQMSITA   86 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka-~va~~~l~~~np~v~I~~   86 (563)
                      .|++++++|.| .||||.++++.|+..|. ++.++|.+.-+..    +..+-.-|+..+.+ +.+.+.+.+....+.+-.
T Consensus         3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~-~Vi~~~r~~~~~~----~~~~~~~D~~~~~~i~~~~~~~~~~~~~id~li   77 (258)
T PRK06398          3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGS-NVINFDIKEPSYN----DVDYFKVDVSNKEQVIKGIDYVISKYGRIDILV   77 (258)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCccccC----ceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            36778999998 57999999999999997 6777776542211    12233457766543 233444444333444443


Q ss_pred             e
Q 008516           87 H   87 (563)
Q Consensus        87 ~   87 (563)
                      +
T Consensus        78 ~   78 (258)
T PRK06398         78 N   78 (258)
T ss_pred             E
Confidence            3

>PRK08303 short chain dehydrogenase; Provisional

Probab=81.65  E-value=6.7  Score=40.72  Aligned_cols=35  Identities=23%  Similarity=0.420  Sum_probs=29.6

Q ss_pred             HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      |+++.++|.|+ +|||.++++.|+..|. ++.+++.+
T Consensus         6 l~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~   41 (305)
T PRK08303          6 LRGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRS   41 (305)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecc
Confidence            67788999986 6999999999999997 67777654

>PRK05650 short chain dehydrogenase; Provisional

Probab=81.64  E-value=6.5  Score=39.46  Aligned_cols=30  Identities=27%  Similarity=0.598  Sum_probs=25.1

Q ss_pred             cEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           14 KVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        14 ~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +|+|.| .||||.++++.|+..|. ++.++|.
T Consensus         2 ~vlVtGasggIG~~la~~l~~~g~-~V~~~~r   32 (270)
T PRK05650          2 RVMITGAASGLGRAIALRWAREGW-RLALADV   32 (270)
T ss_pred             EEEEecCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence            688988 58999999999999997 4666653

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=81.57  E-value=6.3  Score=40.24  Aligned_cols=30  Identities=40%  Similarity=0.699  Sum_probs=25.2

Q ss_pred             EEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           15 VLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        15 VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      |+|.| .|.+|+.+++.|...|...+.++|.
T Consensus         1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~   31 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNERGITDILVVDN   31 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHcCCceEEEEec
Confidence            57887 6999999999999999767777764

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>PLN00106 malate dehydrogenase

Probab=81.57  E-value=2.2  Score=45.01  Aligned_cols=36  Identities=33%  Similarity=0.636  Sum_probs=31.2

Q ss_pred             cCCcEEEECC-cHHHHHHHHHHHHhCC-CeEEEEeCCc
Q 008516           11 KGAKVLMVGA-GGIGCELLKTLALSGF-QDIHIIDMDT   46 (563)
Q Consensus        11 ~~~~VlvvGa-GgiG~ellknLal~Gv-g~I~iiD~D~   46 (563)
                      ...||.|+|+ |.+|+.++-.|++.|. ++|.++|-+.
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~   54 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN   54 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence            3568999999 9999999999999887 5799999644

>PRK07791 short chain dehydrogenase; Provisional

Probab=81.40  E-value=5.2  Score=40.88  Aligned_cols=35  Identities=29%  Similarity=0.518  Sum_probs=28.9

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .+.+++++|.| .||||.++++.|+..|. ++.++|.
T Consensus         3 ~l~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~   38 (286)
T PRK07791          3 LLDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDI   38 (286)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeC
Confidence            46778889998 68999999999999997 5666663

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=81.36  E-value=2.1  Score=44.77  Aligned_cols=32  Identities=28%  Similarity=0.471  Sum_probs=29.7

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .||.|||+|-+|+-++-.|+..|.+++.++|.
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi   33 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDV   33 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence            58999999999999999999999878999995

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=81.30  E-value=6.7  Score=38.81  Aligned_cols=131  Identities=17%  Similarity=0.144  Sum_probs=76.5

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEE--------------------------------------------------
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHII--------------------------------------------------   42 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~ii--------------------------------------------------   42 (563)
                      +++.|+|.|-+|..++..|+..|. +++|-                                                  
T Consensus         2 ~~~~i~GtGniG~alA~~~a~ag~-eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~~v~~~l   80 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLAKAGH-EVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIPDVLAEL   80 (211)
T ss_pred             cEEEEeccChHHHHHHHHHHhCCC-eEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHHHhHHHHH
Confidence            478999999999999999999985 23332                                                  


Q ss_pred             -----eCCccCcccCccccCCCCCCCCc-hHHHHHHHHHHhhCCCceEEEeccCCCCCcchHhhc--ccccEEEEccCCH
Q 008516           43 -----DMDTIEVSNLNRQFLFRQSHVGQ-SKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFF--KQFNVVLNGLDNL  114 (563)
Q Consensus        43 -----D~D~Ve~sNLnRqfLf~~~diGk-~Ka~va~~~l~~~np~v~I~~~~~~i~~~~~~~~~~--~~~dvVi~alDn~  114 (563)
                           |-=.|+.+|---- .++..+.+. +-...+++.+.+.-|+.+|..-...+....+...--  .+.| |..|.|+.
T Consensus        81 ~~~~~~KIvID~tnp~~~-~~~~~~~~~~~~~~saae~va~~lp~akVVkAFn~i~a~~l~~~~~~~~~~~-v~vagDD~  158 (211)
T COG2085          81 RDALGGKIVIDATNPIEV-NGEPGDLYLVPSEGSAAEIVAKLLPGAKVVKAFNTIPAAVLADLAKPGGRRD-VLVAGDDA  158 (211)
T ss_pred             HHHhCCeEEEecCCCccc-cCCccccccCCCCCcHHHHHHHHCCCcchhhhhcccCHHHhccCCCcCCcee-EEEecCcH
Confidence                 0111223332000 234444433 223345667777777776543222221111100001  1233 44466778


Q ss_pred             HHHHHHHHHHHhcCCCEEEeccccceeeEEEE
Q 008516          115 DARRHVNRLCLAADVPLVESGTTGFLGQVTVH  146 (563)
Q Consensus       115 ~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~  146 (563)
                      +|+..+-+++.+.|.--+++|..-....+...
T Consensus       159 ~Ak~~v~~L~~~iG~~~ld~G~L~~a~~le~~  190 (211)
T COG2085         159 EAKAVVAELAEDIGFRPLDAGPLENARILEPG  190 (211)
T ss_pred             HHHHHHHHHHHhcCcceeeccccccccccccc
Confidence            99999999999999988999987655554443

>TIGR02415 23BDH acetoin reductases

Probab=81.29  E-value=6.7  Score=38.67  Aligned_cols=31  Identities=35%  Similarity=0.624  Sum_probs=25.8

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        13 ~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ++++|.| .|+||..+++.|+..|. ++.+++.
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r   32 (254)
T TIGR02415         1 KVALVTGGAQGIGKGIAERLAKDGF-AVAVADL   32 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            3688888 69999999999999997 5777763

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=81.25  E-value=4.9  Score=43.79  Aligned_cols=33  Identities=36%  Similarity=0.590  Sum_probs=27.9

Q ss_pred             HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEe
Q 008516           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD   43 (563)
                      +++++|+|.|+ ||||.++++.|+..|. ++.++|
T Consensus       176 l~gK~VLITGASgGIG~aLA~~La~~G~-~Vi~l~  209 (406)
T PRK07424        176 LKGKTVAVTGASGTLGQALLKELHQQGA-KVVALT  209 (406)
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEe
Confidence            56788999985 9999999999999997 566665

>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway

Probab=81.21  E-value=1.2  Score=37.21  Aligned_cols=62  Identities=16%  Similarity=0.054  Sum_probs=31.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHhcCCCcCeEEecCeEEEeeCCCchHHHHHHhhhhhhcchhhhcCcccCCCcce
Q 008516          437 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVKIQASSVTLCSSPPD  512 (563)
Q Consensus       437 ~~~l~i~~~~~TL~~li~~~lk~~~~l~~~~i~~g~~~LY~~~~~~~~~~~~~~~~nl~k~L~el~~gv~~g~~~~  512 (563)
                      ..+++++. .-|+.+|.++ +.+.+++.....     .||......     +....+..++|+++  |++||++|-
T Consensus        15 ~~Rie~~~-~~t~~~L~~k-I~~~l~~~~~~~-----~L~~~~~~~-----~~l~s~~~~tl~~l--glkHGdmly   76 (80)
T PF11543_consen   15 MKRIEVSP-SSTLSDLKEK-ISEQLSIPDSSQ-----SLSKDRNNK-----EELKSSDSKTLSSL--GLKHGDMLY   76 (80)
T ss_dssp             EEEEEE-T-TSBHHHHHHH-HHHHS---TTT--------BSSGGGG-----GCSSS-TT-CCCCT-----TT-EEE
T ss_pred             CEEEEcCC-cccHHHHHHH-HHHHcCCCCcce-----EEEecCCCC-----cccccCCcCCHHHc--CCCCccEEE
Confidence            45677774 6699999999 577888775532     334221110     01223457899999  999998763

Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=81.19  E-value=2.1  Score=46.02  Aligned_cols=33  Identities=30%  Similarity=0.530  Sum_probs=29.7

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~   46 (563)
                      ++|+|||+|-+|+.+|..|+..|. +++|+|.+.
T Consensus         1 ~~v~IVG~Gi~Gls~A~~l~~~g~-~V~vle~~~   33 (416)
T PRK00711          1 MRVVVLGSGVIGVTSAWYLAQAGH-EVTVIDRQP   33 (416)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence            379999999999999999999996 699999873

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=81.17  E-value=1.9  Score=46.56  Aligned_cols=35  Identities=26%  Similarity=0.422  Sum_probs=30.9

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .|++++|.|||+|.+|..+++.|...|+ ++...|.
T Consensus       113 ~l~gktvGIIG~G~IG~~va~~l~a~G~-~V~~~Dp  147 (381)
T PRK00257        113 DLAERTYGVVGAGHVGGRLVRVLRGLGW-KVLVCDP  147 (381)
T ss_pred             CcCcCEEEEECCCHHHHHHHHHHHHCCC-EEEEECC
Confidence            4788999999999999999999999998 5677764

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=81.16  E-value=7.3  Score=39.53  Aligned_cols=76  Identities=18%  Similarity=0.243  Sum_probs=44.5

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCC-CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gv-g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      .+.+|+.+|||+ |..........|. ++++.+|..                   ..+.+.+++...+.... +++....
T Consensus        77 ~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s-------------------~~~l~~A~~~~~~~g~~-~v~~~~~  135 (272)
T PRK11873         77 PGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMT-------------------PEMLAKARANARKAGYT-NVEFRLG  135 (272)
T ss_pred             CCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCC-------------------HHHHHHHHHHHHHcCCC-CEEEEEc
Confidence            467999999998 8765544445565 478888743                   23445555555544321 4555555


Q ss_pred             CCCCCcchHhhcccccEEEEc
Q 008516           90 NVKDPKFNVEFFKQFNVVLNG  110 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~a  110 (563)
                      ++.+..+.   -..||+|+..
T Consensus       136 d~~~l~~~---~~~fD~Vi~~  153 (272)
T PRK11873        136 EIEALPVA---DNSVDVIISN  153 (272)
T ss_pred             chhhCCCC---CCceeEEEEc
Confidence            55322111   1368999864

>PRK06270 homoserine dehydrogenase; Provisional

Probab=81.08  E-value=9.8  Score=40.37  Aligned_cols=23  Identities=30%  Similarity=0.547  Sum_probs=20.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHh
Q 008516           12 GAKVLMVGAGGIGCELLKTLALS   34 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~   34 (563)
                      ..||.|+|+|.+|..+++.|...
T Consensus         2 ~i~V~IiG~G~VG~~~~~~L~~~   24 (341)
T PRK06270          2 EMKIALIGFGGVGQGVAELLAEK   24 (341)
T ss_pred             eEEEEEECCCHHHHHHHHHHHHh
Confidence            35899999999999999999765

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=81.04  E-value=6.4  Score=40.89  Aligned_cols=33  Identities=27%  Similarity=0.391  Sum_probs=27.2

Q ss_pred             cCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEe
Q 008516           11 KGAKVLMVGA-GGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        11 ~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD   43 (563)
                      ++++++|.|+ +|||.++++.|+..|..++.+++
T Consensus         2 ~~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~   35 (314)
T TIGR01289         2 QKPTVIITGASSGLGLYAAKALAATGEWHVIMAC   35 (314)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCCEEEEEe
Confidence            4678899985 79999999999999954677765

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PRK07201 short chain dehydrogenase; Provisional

Probab=81.00  E-value=5.3  Score=45.71  Aligned_cols=35  Identities=26%  Similarity=0.459  Sum_probs=29.3

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .+++++++|.| .||||.++++.|+..|. ++.+++.
T Consensus       368 ~~~~k~vlItGas~giG~~la~~l~~~G~-~V~~~~r  403 (657)
T PRK07201        368 PLVGKVVLITGASSGIGRATAIKVAEAGA-TVFLVAR  403 (657)
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            45677899998 58999999999999997 6777763

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=80.66  E-value=8.7  Score=39.23  Aligned_cols=22  Identities=41%  Similarity=0.650  Sum_probs=20.2

Q ss_pred             CcEEEECCcHHHHHHHHHHHHh
Q 008516           13 AKVLMVGAGGIGCELLKTLALS   34 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~   34 (563)
                      .||.|+|+|.+|..+++.|...
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~   23 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHD   23 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhC
Confidence            4899999999999999999876

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=80.62  E-value=2.3  Score=44.66  Aligned_cols=32  Identities=25%  Similarity=0.370  Sum_probs=28.1

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .+|.|+|+|.+|+.++..|+..|. +++++|.+
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r~   36 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGV-PVRLWARR   36 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            589999999999999999999996 58887754

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=80.56  E-value=2.2  Score=42.71  Aligned_cols=37  Identities=27%  Similarity=0.482  Sum_probs=32.7

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .|+.+||+|.|.|.+|..+++.|...|..-+.+.|.+
T Consensus        28 ~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~   64 (227)
T cd01076          28 GLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSD   64 (227)
T ss_pred             CccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            4788999999999999999999999998766688754

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=80.40  E-value=7.7  Score=37.74  Aligned_cols=32  Identities=31%  Similarity=0.534  Sum_probs=26.2

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEE
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHII   42 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~ii   42 (563)
                      +.+++++|.| .|++|.++++.|+..|.. +.++
T Consensus         3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~~-v~~~   35 (248)
T PRK05557          3 LEGKVALVTGASRGIGRAIAERLAAQGAN-VVIN   35 (248)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEE
Confidence            4567899998 589999999999999975 4443

>PRK08628 short chain dehydrogenase; Provisional

Probab=80.31  E-value=6.6  Score=38.93  Aligned_cols=34  Identities=32%  Similarity=0.416  Sum_probs=28.2

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      |++++++|.| .||||.++++.|+..|.. +.+++.
T Consensus         5 l~~~~ilItGasggiG~~la~~l~~~G~~-v~~~~r   39 (258)
T PRK08628          5 LKDKVVIVTGGASGIGAAISLRLAEEGAI-PVIFGR   39 (258)
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHcCCc-EEEEcC
Confidence            6788999998 579999999999999974 555543

>PRK07574 formate dehydrogenase; Provisional

Probab=80.27  E-value=2.1  Score=46.25  Aligned_cols=92  Identities=22%  Similarity=0.256  Sum_probs=57.6

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      .|.+++|.|||.|.||.++++.|...|+ +++.+|....                   +.+..    ...  +  ++.+.
T Consensus       189 ~L~gktVGIvG~G~IG~~vA~~l~~fG~-~V~~~dr~~~-------------------~~~~~----~~~--g--~~~~~  240 (385)
T PRK07574        189 DLEGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDRHRL-------------------PEEVE----QEL--G--LTYHV  240 (385)
T ss_pred             ecCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCCCC-------------------chhhH----hhc--C--ceecC
Confidence            4888999999999999999999998888 5777663210                   00000    001  1  11110


Q ss_pred             cCCCCCcchHhhcccccEEEEcc-CCHHHHHHHHHHHHh---cCCCEEEec
Q 008516           89 ANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLA---ADVPLVESG  135 (563)
Q Consensus        89 ~~i~~~~~~~~~~~~~dvVi~al-Dn~~ar~~in~~c~~---~~~pli~~g  135 (563)
                             .-+++++++|+|+.++ .+.+.+..+|+-...   .+.-+|+.+
T Consensus       241 -------~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~a  284 (385)
T PRK07574        241 -------SFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTA  284 (385)
T ss_pred             -------CHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECC
Confidence                   1256788999998865 456677777654332   344466655

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=80.26  E-value=2.4  Score=40.24  Aligned_cols=89  Identities=19%  Similarity=0.393  Sum_probs=51.8

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      .|..++++|+|.|-+|.-+|+.|..+|. +++++|-|.+.                      +.++..   -.-++..  
T Consensus        20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga-~V~V~e~DPi~----------------------alqA~~---dGf~v~~--   71 (162)
T PF00670_consen   20 MLAGKRVVVIGYGKVGKGIARALRGLGA-RVTVTEIDPIR----------------------ALQAAM---DGFEVMT--   71 (162)
T ss_dssp             --TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHHH----------------------HHHHHH---TT-EEE---
T ss_pred             eeCCCEEEEeCCCcccHHHHHHHhhCCC-EEEEEECChHH----------------------HHHhhh---cCcEecC--
Confidence            4678899999999999999999999995 79999877642                      111111   2223322  


Q ss_pred             cCCCCCcchHhhcccccEEEEccCCHHH--HHHHHHHHHhcCCCEEEec
Q 008516           89 ANVKDPKFNVEFFKQFNVVLNGLDNLDA--RRHVNRLCLAADVPLVESG  135 (563)
Q Consensus        89 ~~i~~~~~~~~~~~~~dvVi~alDn~~a--r~~in~~c~~~~~pli~~g  135 (563)
                              -++.....|++|.++.+...  ..++.++  +.+.-+.+.|
T Consensus        72 --------~~~a~~~adi~vtaTG~~~vi~~e~~~~m--kdgail~n~G  110 (162)
T PF00670_consen   72 --------LEEALRDADIFVTATGNKDVITGEHFRQM--KDGAILANAG  110 (162)
T ss_dssp             --------HHHHTTT-SEEEE-SSSSSSB-HHHHHHS---TTEEEEESS
T ss_pred             --------HHHHHhhCCEEEECCCCccccCHHHHHHh--cCCeEEeccC
Confidence                    13456788999999888653  4455443  3444444444

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=80.15  E-value=6.4  Score=39.12  Aligned_cols=34  Identities=29%  Similarity=0.475  Sum_probs=27.3

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEe
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      .+.++.++|.| .||||.++++.|+..|. ++.++|
T Consensus         7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G~-~vv~~~   41 (253)
T PRK08993          7 SLEGKVAVVTGCDTGLGQGMALGLAEAGC-DIVGIN   41 (253)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEec
Confidence            36678899998 67899999999999997 455554

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=80.08  E-value=6.9  Score=41.25  Aligned_cols=33  Identities=33%  Similarity=0.635  Sum_probs=28.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +.+|+|.|+|++|..++......|..++..+|.
T Consensus       177 g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~  209 (358)
T TIGR03451       177 GDSVAVIGCGGVGDAAIAGAALAGASKIIAVDI  209 (358)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence            578999999999999998888899887887763

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=80.08  E-value=7.8  Score=38.63  Aligned_cols=34  Identities=32%  Similarity=0.511  Sum_probs=29.1

Q ss_pred             HHcCCcEEEECCc---HHHHHHHHHHHHhCCCeEEEEe
Q 008516            9 AIKGAKVLMVGAG---GIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus         9 kL~~~~VlvvGaG---giG~ellknLal~Gvg~I~iiD   43 (563)
                      +|.+++++|.|++   |||.++++.|+..|. ++.+++
T Consensus         3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~-~vi~~~   39 (256)
T PRK12859          3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGA-DIFFTY   39 (256)
T ss_pred             CcCCcEEEEECCCCCCChHHHHHHHHHHCCC-eEEEEe
Confidence            5788999999985   899999999999997 466654

>PRK06487 glycerate dehydrogenase; Provisional

Probab=80.05  E-value=2.1  Score=44.95  Aligned_cols=34  Identities=18%  Similarity=0.370  Sum_probs=29.4

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEe
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      .|.+++|.|||.|.||.++++-|...|. ++..+|
T Consensus       145 ~l~gktvgIiG~G~IG~~vA~~l~~fgm-~V~~~~  178 (317)
T PRK06487        145 ELEGKTLGLLGHGELGGAVARLAEAFGM-RVLIGQ  178 (317)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEEC
Confidence            5889999999999999999999987776 566655

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=80.03  E-value=11  Score=43.62  Aligned_cols=34  Identities=35%  Similarity=0.540  Sum_probs=30.1

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ..++|+|||+|..|...+..|++.|. +++|+|..
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~-~Vtv~e~~  225 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGH-DVTIFDAN  225 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-cEEEEecC
Confidence            35689999999999999999999997 59999854

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	563
3kyc_B	660	Human Sumo E1 Complex With A Sumo1-Amp Mimic Length		1e-102
3kyd_B	551	Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mi		1e-102
1y8q_B	640	Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex		1e-101
4ii2_A	1001	Crystal Structure Of Ubiquitin Activating Enzyme 1		1e-43
2nvu_B	805	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		4e-40
1tt5_B	434	Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 I		5e-40
1tt5_B	434	Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 I		7e-04
3gzn_B	463	Structure Of Nedd8-Activating Enzyme In Complex Wit		6e-40
3gzn_B	463	Structure Of Nedd8-Activating Enzyme In Complex Wit		7e-04
1yov_B	444	Insights Into The Ubiquitin Transfer Cascade From T		6e-40
1yov_B	444	Insights Into The Ubiquitin Transfer Cascade From T		6e-04
3dbh_B	434	Structural Dissection Of A Gating Mechanism Prevent		4e-39
3dbh_B	434	Structural Dissection Of A Gating Mechanism Prevent		8e-04
3dbr_B	434	Structural Dissection Of A Gating Mechanism Prevent		5e-39
3dbr_B	434	Structural Dissection Of A Gating Mechanism Prevent		8e-04
3dbl_B	434	Structural Dissection Of A Gating Mechanism Prevent		5e-39
3dbl_B	434	Structural Dissection Of A Gating Mechanism Prevent		7e-04
1r4m_B	431	Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Com		6e-39
1r4m_B	431	Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Com		7e-04
3cmm_A	1015	Crystal Structure Of The Uba1-Ubiquitin Complex Len		4e-34
3cmm_A	1015	Crystal Structure Of The Uba1-Ubiquitin Complex Len		7e-07
1jwb_B	249	Structure Of The Covalent Acyl-Adenylate Form Of Th		8e-23
2px9_A	217	The Intrinsic Affinity Between E2 And The Cys Domai		2e-17
3h5a_A	358	Crystal Structure Of E. Coli Mccb Length = 358		2e-16
3h5n_A	353	Crystal Structure Of E. Coli Mccb + Atp Length = 35		3e-16
1zfn_A	253	Structural Analysis Of Escherichia Coli Thif Length		1e-14
1zud_1	251	Structure Of This-Thif Protein Complex Length = 251		1e-14
3guc_A	292	Human Ubiquitin-Activating Enzyme 5 In Complex With		9e-08
1y8q_A	346	Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex		1e-07
4gsk_A	615	Crystal Structure Of An Atg7-Atg10 Crosslinked Comp		3e-07
3vh1_A	598	Crystal Structure Of Saccharomyces Cerevisiae Atg7		3e-07
3vh2_A	616	Crystal Structure Of Saccharomyces Cerevisiae Atg7		4e-07
4gsl_A	615	Crystal Structure Of An Atg7-Atg3 Crosslinked Compl		4e-07
3t7e_A	344	Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E		7e-07
3vh3_A	340	Crystal Structure Of Atg7ctd-Atg8 Complex Length =		7e-07
3rui_A	340	Crystal Structure Of Atg7c-Atg8 Complex Length = 34		3e-06
3gzn_A	534	Structure Of Nedd8-Activating Enzyme In Complex Wit		2e-05
1r4m_A	529	Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Com		2e-05
1tt5_A	531	Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 I		2e-05
2nvu_A	536	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		2e-05
1yov_A	537	Insights Into The Ubiquitin Transfer Cascade From T		3e-05

>pdb|3KYC|B Chain B, Human Sumo E1 Complex With A Sumo1-Amp Mimic Length = 660

Iteration: 1
 Score =  369 bits (946), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 202/480 (42%), Positives = 299/480 (62%), Gaps = 35/480 (7%)
Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
           EA+ G +VL+VGAGGIGCELLK L L+GF  I +ID+DTI+VSNLNRQFLF++ HVG+SK
Sbjct: 33  EAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSK 92
Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA 127
           A+VA+++VL+F P+ +I A+H ++ +P +NVEFF+QF +V+N LDN  AR HVNR+CLAA
Sbjct: 93  AQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMCLAA 152
Query: 128 DVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDL 187
           DVPL+ESGT G+LGQVT   KG TECYEC PKP  +T+P CTI +TPS+ +HCIVWAK  
Sbjct: 153 DVPLIESGTAGYLGQVTTIKKGVTECYECHPKPTQRTFPGCTIRNTPSEPIHCIVWAK-Y 211
Query: 188 LFAKLFGDKNQENDLNVRXXXXXXXXXXEDVFVRRK----DEDIDQYGRRIYDHVFGY-- 241
           LF +LFG+++ + +++             +   R +    D DI +   + +    GY  
Sbjct: 212 LFNQLFGEEDADQEVSPDRADPEAAWEPTEAEARARACNEDGDIKRISTKEWAKSTGYDP 271
Query: 242 ----------NIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVS 291
                     +I    + ++ W+ R  P P+  A+V  +   E N +  +N         
Sbjct: 272 VKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAEVQSQG-EETNASDQQN--------- 321
Query: 292 AMASLGLKNPQDTWTLLESSRIF---LEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAA 348
               LGLK+ Q    +   +R+F   +E L++  A++  +   L +DKDD  A++FVT+A
Sbjct: 322 -EPQLGLKD-QQVLDVKSYARLFSKSIETLRVHLAEK-GDGAELIWDKDDPSAMDFVTSA 378
Query: 349 ANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRMTYC 408
           AN+R   F +++ S F+ K +AGNI+ A+ATTNA+IAGLIV+E +K+L    D+ R  + 
Sbjct: 379 ANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKILSGKIDQCRTIFL 438
Query: 409 LEHIT-KKMLLMPVEPYEPNKSCYVCSETP-LSLEINTSRSKLRDFVEKIVKAKLGINFP 466
            +    +K LL+P     PN +CYVC+  P +++ +N  +  +    +KIVK K  +  P
Sbjct: 439 NKQPNPRKKLLVPCALDPPNPNCYVCASKPEVTVRLNVHKVTVLTLQDKIVKEKFAMVAP 498

>pdb|3KYD|B Chain B, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic Length = 551

Iteration: 1
 Score =  368 bits (945), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 202/480 (42%), Positives = 299/480 (62%), Gaps = 35/480 (7%)
Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
           EA+ G +VL+VGAGGIGCELLK L L+GF  I +ID+DTI+VSNLNRQFLF++ HVG+SK
Sbjct: 15  EAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSK 74
Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA 127
           A+VA+++VL+F P+ +I A+H ++ +P +NVEFF+QF +V+N LDN  AR HVNR+CLAA
Sbjct: 75  AQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMCLAA 134
Query: 128 DVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDL 187
           DVPL+ESGT G+LGQVT   KG TECYEC PKP  +T+P CTI +TPS+ +HCIVWAK  
Sbjct: 135 DVPLIESGTAGYLGQVTTIKKGVTECYECHPKPTQRTFPGCTIRNTPSEPIHCIVWAK-Y 193
Query: 188 LFAKLFGDKNQENDLNVRXXXXXXXXXXEDVFVRRK----DEDIDQYGRRIYDHVFGY-- 241
           LF +LFG+++ + +++             +   R +    D DI +   + +    GY  
Sbjct: 194 LFNQLFGEEDADQEVSPDRADPEAAWEPTEAEARARACNEDGDIKRISTKEWAKSTGYDP 253
Query: 242 ----------NIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVS 291
                     +I    + ++ W+ R  P P+  A+V  +   E N +  +N         
Sbjct: 254 VKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAEVQSQG-EETNASDQQN--------- 303
Query: 292 AMASLGLKNPQDTWTLLESSRIF---LEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAA 348
               LGLK+ Q    +   +R+F   +E L++  A++  +   L +DKDD  A++FVT+A
Sbjct: 304 -EPQLGLKD-QQVLDVKSYARLFSKSIETLRVHLAEK-GDGAELIWDKDDPSAMDFVTSA 360
Query: 349 ANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRMTYC 408
           AN+R   F +++ S F+ K +AGNI+ A+ATTNA+IAGLIV+E +K+L    D+ R  + 
Sbjct: 361 ANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKILSGKIDQCRTIFL 420
Query: 409 LEHIT-KKMLLMPVEPYEPNKSCYVCSETP-LSLEINTSRSKLRDFVEKIVKAKLGINFP 466
            +    +K LL+P     PN +CYVC+  P +++ +N  +  +    +KIVK K  +  P
Sbjct: 421 NKQPNPRKKLLVPCALDPPNPNCYVCASKPEVTVRLNVHKVTVLTLQDKIVKEKFAMVAP 480

>pdb|1Y8Q|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex Length = 640

Iteration: 1
 Score =  366 bits (939), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/484 (42%), Positives = 302/484 (62%), Gaps = 36/484 (7%)
Query: 5   RQL-EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHV 63
           R+L EA+ G +VL+VGAGGIGCELLK L L+GF  I +ID+DTI+VSNLNRQFLF++ HV
Sbjct: 9   RELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHV 68
Query: 64  GQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL 123
           G+SKA+VA+++VL+F P+ +I A+H ++ +P +NVEFF+QF +V+N LDN  AR HVNR+
Sbjct: 69  GRSKAQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRM 128
Query: 124 CLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVW 183
           CLAADVPL+ESGT G+LGQVT   KG TECYEC PKP  +T+P  TI +TPS+ +HCIVW
Sbjct: 129 CLAADVPLIESGTAGYLGQVTTIKKGVTECYECHPKPTQRTFPGATIRNTPSEPIHCIVW 188
Query: 184 AKDLLFAKLFGDKNQENDLNVRXXXXXXXXXXEDVFVRRKDEDIDQYGRRI--------- 234
           AK  LF +LFG+++ + +++             +   R +  + D   +RI         
Sbjct: 189 AK-YLFNQLFGEEDADQEVSPDRADPEAAWEPTEAEARARASNEDGDIKRISTKEWAKST 247
Query: 235 -YDHV------FGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDT 287
            YD V      F  +I    + ++ W+ R  P P+  A+V  +   E N +  +N     
Sbjct: 248 GYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAEVQSQG-EETNASDQQN----- 301
Query: 288 SSVSAMASLGLKNPQDTWTLLESSRIF---LEALKLFFAKREKEIGNLSFDKDDQLAVEF 344
                   LGLK+ Q    +   +R+F   +E L++  A++  +   L +DKDD  A++F
Sbjct: 302 -----EPQLGLKD-QQVLDVKSYARLFSKSIETLRVHLAEK-GDGAELIWDKDDPSAMDF 354
Query: 345 VTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYR 404
           VT+AAN+R   F +++ S F+ K +AGNI+ A+ATTNA+IAGLIV+E +K+L    D+ R
Sbjct: 355 VTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKILSGKIDQCR 414
Query: 405 MTYCLEHIT-KKMLLMPVEPYEPNKSCYVCSETP-LSLEINTSRSKLRDFVEKIVKAKLG 462
             +  +    +K LL+P     PN +CYVC+  P +++ +N  +  +    +KIVK K  
Sbjct: 415 TIFLNKQPNPRKKLLVPCALDPPNPNCYVCASKPEVTVRLNVHKVTVLTLQDKIVKEKFA 474
Query: 463 INFP 466
           +  P
Sbjct: 475 MVAP 478

>pdb|4II2|A Chain A, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 1001

Iteration: 1
 Score =  174 bits (441), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 133/452 (29%), Positives = 210/452 (46%), Gaps = 63/452 (13%)
Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQD-----IHIIDMDTIEVSNLNRQFLFRQSH 62
           E I      +VGAG IGCE+LK  A+ G        I + DMD+IE SNLNRQFLFR   
Sbjct: 412 EKIASLSTFLVGAGAIGCEMLKNWAMMGVATGESGHISVTDMDSIEKSNLNRQFLFRPRD 471
Query: 63  VGQSKAKVARDAVLKFRPQMS--ITAHHANV---KDPKFNVEFFKQFNVVLNGLDNLDAR 117
           VG+ K++ A  AV    P ++  IT++   V    +  F  EFF++ ++V N LDN++AR
Sbjct: 472 VGKLKSECASTAVSIMNPSLTGKITSYQERVGPESEGIFGDEFFEKLSLVTNALDNVEAR 531
Query: 118 RHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKF 177
            +V+R C+  + PL+ESGT G  G   V V   TE Y     P  K++P+CT+ + P++ 
Sbjct: 532 MYVDRRCVFFEKPLLESGTLGTKGNTQVVVPHLTESYGSSQDPPEKSFPICTLKNFPNRI 591
Query: 178 VHCIVWAKDL---LFAKLFGDKNQ--------ENDLNVRXXXXXXXXXXEDVFVRRKD-- 224
            H I WA+DL   LF +   + N         E  L              D  V  K   
Sbjct: 592 EHTIAWARDLFEGLFKQPIDNVNMYLSSPNFLETSLKTSSNPREVLENIRDYLVTEKPLS 651
Query: 225 -EDIDQYGRRIYDHVFGYNIE----------VASSNEETWKNRNR-PKP----------- 261
            E+   + R  +D  F  NI+          V S+ +  W    R P P           
Sbjct: 652 FEECIMWARLQFDKFFNNNIQQLLFNFPKDSVTSTGQPFWSGPKRAPTPLSFDIHNREHF 711
Query: 262 ---IYSADVMPENL---TEQNGNVAKNCVVDTSSVSAMASLGLK-----NPQDTWTLLES 310
              + +A +   N    +E +  + +  +   +        G+K     N +   T    
Sbjct: 712 DFIVAAASLYAFNYGLKSETDPAIYERVLAGYNPPPFAPKSGIKIQVNENEEAPETAANK 771
Query: 311 SRIFLEALKLFFAKREKEIG----NLSFDKDDQL--AVEFVTAAANIRAASFGISLHSLF 364
            +  L+++          +G       F+KDD     ++F+TAA+N+RA ++ I+    F
Sbjct: 772 DKQELKSIADSLPPPSSLVGFRLTPAEFEKDDDSNHHIDFITAASNLRAMNYDITPADRF 831
Query: 365 EAKGIAGNIVHAVATTNAIIAGLIVIEAIKVL 396
           + K +AG IV A+ T+ A+++GL+ +E +K++
Sbjct: 832 KTKFVAGKIVPAMCTSTAVVSGLVCLELVKLV 863

>pdb|2NVU|B Chain B, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 805

Iteration: 1
 Score =  162 bits (410), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 84/192 (43%), Positives = 121/192 (63%), Gaps = 16/192 (8%)
Query: 14  KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARD 73
           KVL++GAGG+GCELLK LALSGF+ IH+IDMDTI+VSNLNRQFLFR   +G+ KA+VA +
Sbjct: 413 KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE 472
Query: 74  AVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL-------- 125
            +    P  ++  H   ++D  FN  F++QF++++ GLD++ ARR +N + +        
Sbjct: 473 FLNDRVPNCNVVPHFNKIQD--FNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDG 530
Query: 126 ----AADVPLVESGTTGFLGQVTVHVKGKTECYEC--QPKPAPKTYPVCTITSTPSKFVH 179
               ++ VPL++ GT GF G   V + G T C EC  +  P    +P+CTI S P    H
Sbjct: 531 VLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEH 590
Query: 180 CIVWAKDLLFAK 191
           CI + + L + K
Sbjct: 591 CIEYVRMLQWPK 602

>pdb|1TT5|B Chain B, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 Interaction Required For Optimal Conjugation Of The Ubiquitin-Like Protein Nedd8 Length = 434

Iteration: 1
 Score =  162 bits (409), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 84/192 (43%), Positives = 121/192 (63%), Gaps = 16/192 (8%)
Query: 14  KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARD 73
           KVL++GAGG+GCELLK LALSGF+ IH+IDMDTI+VSNLNRQFLFR   +G+ KA+VA +
Sbjct: 42  KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE 101
Query: 74  AVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL-------- 125
            +    P  ++  H   ++D  FN  F++QF++++ GLD++ ARR +N + +        
Sbjct: 102 FLNDRVPNCNVVPHFNKIQD--FNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDG 159
Query: 126 ----AADVPLVESGTTGFLGQVTVHVKGKTECYEC--QPKPAPKTYPVCTITSTPSKFVH 179
               ++ VPL++ GT GF G   V + G T C EC  +  P    +P+CTI S P    H
Sbjct: 160 VLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEH 219
Query: 180 CIVWAKDLLFAK 191
           CI + + L + K
Sbjct: 220 CIEYVRMLQWPK 231

>pdb|1TT5|B Chain B, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 Interaction Required For Optimal Conjugation Of The Ubiquitin-Like Protein Nedd8 Length = 434

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 78/176 (44%), Gaps = 32/176 (18%)
Query: 315 LEALKLFFAKREKEIG-NLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNI 373
           +E +++    +E+  G  +  D DD   ++++   +  RA+ + I   +    +G+   I
Sbjct: 221 IEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRI 280
Query: 374 VHAVATTNAIIAGLIVIEAIKV------------LLKDTDKYRMTYCLEHITKKMLLMPV 421
           + AVA+TNA+IA +   E  K+            +  D D    TY  E           
Sbjct: 281 IPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGL-YTYTFEA---------- 329
Query: 422 EPYEPNKSCYVCSETPLSLEINTSRSKLRDFVEKIV-KAKLGINFPLI---MHGSN 473
              E  ++C  CS+ P +++ + S +KL++ ++ +   A L +  P I   + G N
Sbjct: 330 ---ERKENCPACSQLPQNIQFSPS-AKLQEVLDYLTNSASLQMKSPAITATLEGKN 381

>pdb|3GZN|B Chain B, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8 And Mln4924 Length = 463

Iteration: 1
 Score =  162 bits (409), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 84/192 (43%), Positives = 121/192 (63%), Gaps = 16/192 (8%)
Query: 14  KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARD 73
           KVL++GAGG+GCELLK LALSGF+ IH+IDMDTI+VSNLNRQFLFR   +G+ KA+VA +
Sbjct: 71  KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE 130
Query: 74  AVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL-------- 125
            +    P  ++  H   ++D  FN  F++QF++++ GLD++ ARR +N + +        
Sbjct: 131 FLNDRVPNCNVVPHFNKIQD--FNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDG 188
Query: 126 ----AADVPLVESGTTGFLGQVTVHVKGKTECYEC--QPKPAPKTYPVCTITSTPSKFVH 179
               ++ VPL++ GT GF G   V + G T C EC  +  P    +P+CTI S P    H
Sbjct: 189 VLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEH 248
Query: 180 CIVWAKDLLFAK 191
           CI + + L + K
Sbjct: 249 CIEYVRMLQWPK 260

>pdb|3GZN|B Chain B, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8 And Mln4924 Length = 463

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 78/176 (44%), Gaps = 32/176 (18%)
Query: 315 LEALKLFFAKREKEIG-NLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNI 373
           +E +++    +E+  G  +  D DD   ++++   +  RA+ + I   +    +G+   I
Sbjct: 250 IEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRI 309
Query: 374 VHAVATTNAIIAGLIVIEAIKV------------LLKDTDKYRMTYCLEHITKKMLLMPV 421
           + AVA+TNA+IA +   E  K+            +  D D    TY  E           
Sbjct: 310 IPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGL-YTYTFEA---------- 358
Query: 422 EPYEPNKSCYVCSETPLSLEINTSRSKLRDFVEKIV-KAKLGINFPLI---MHGSN 473
              E  ++C  CS+ P +++ + S +KL++ ++ +   A L +  P I   + G N
Sbjct: 359 ---ERKENCPACSQLPQNIQFSPS-AKLQEVLDYLTNSASLQMKSPAITATLEGKN 410

>pdb|1YOV|B Chain B, Insights Into The Ubiquitin Transfer Cascade From The Refined Structure Of The Activating Enzyme For Nedd8 Length = 444

Iteration: 1
 Score =  162 bits (409), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 84/192 (43%), Positives = 121/192 (63%), Gaps = 16/192 (8%)
Query: 14  KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARD 73
           KVL++GAGG+GCELLK LALSGF+ IH+IDMDTI+VSNLNRQFLFR   +G+ KA+VA +
Sbjct: 52  KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE 111
Query: 74  AVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL-------- 125
            +    P  ++  H   ++D  FN  F++QF++++ GLD++ ARR +N + +        
Sbjct: 112 FLNDRVPNCNVVPHFNKIQD--FNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDG 169
Query: 126 ----AADVPLVESGTTGFLGQVTVHVKGKTECYEC--QPKPAPKTYPVCTITSTPSKFVH 179
               ++ VPL++ GT GF G   V + G T C EC  +  P    +P+CTI S P    H
Sbjct: 170 VLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEH 229
Query: 180 CIVWAKDLLFAK 191
           CI + + L + K
Sbjct: 230 CIEYVRMLQWPK 241

>pdb|1YOV|B Chain B, Insights Into The Ubiquitin Transfer Cascade From The Refined Structure Of The Activating Enzyme For Nedd8 Length = 444

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 78/176 (44%), Gaps = 32/176 (18%)
Query: 315 LEALKLFFAKREKEIG-NLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNI 373
           +E +++    +E+  G  +  D DD   ++++   +  RA+ + I   +    +G+   I
Sbjct: 231 IEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRI 290
Query: 374 VHAVATTNAIIAGLIVIEAIKV------------LLKDTDKYRMTYCLEHITKKMLLMPV 421
           + AVA+TNA+IA +   E  K+            +  D D    TY  E           
Sbjct: 291 IPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGL-YTYTFEA---------- 339
Query: 422 EPYEPNKSCYVCSETPLSLEINTSRSKLRDFVEKIV-KAKLGINFPLI---MHGSN 473
              E  ++C  CS+ P +++ + S +KL++ ++ +   A L +  P I   + G N
Sbjct: 340 ---ERKENCPACSQLPQNIQFSPS-AKLQEVLDYLTNSASLQMKSPAITATLEGKN 391

>pdb|3DBH|B Chain B, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190ala-Nedd8ala72arg) Length = 434

Iteration: 1
 Score =  159 bits (402), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 83/192 (43%), Positives = 120/192 (62%), Gaps = 16/192 (8%)
Query: 14  KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARD 73
           KVL++GAGG+GCELLK LALSGF+ IH+IDMDTI+VSNLNRQFLFR   +G+ KA+VA +
Sbjct: 42  KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE 101
Query: 74  AVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL-------- 125
            +    P  ++  H   ++D  FN  F++QF++++ GLD++ ARR +N + +        
Sbjct: 102 FLNDRVPNCNVVPHFNKIQD--FNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDG 159
Query: 126 ----AADVPLVESGTTGFLGQVTVHVKGKTECYEC--QPKPAPKTYPVCTITSTPSKFVH 179
               ++ VPL++ GT GF G   V + G T C EC  +  P    +P+ TI S P    H
Sbjct: 160 VLDPSSIVPLIDGGTEGFKGNAAVILPGMTACIECTLELYPPQVNFPMATIASMPRLPEH 219
Query: 180 CIVWAKDLLFAK 191
           CI + + L + K
Sbjct: 220 CIEYVRMLQWPK 231

>pdb|3DBH|B Chain B, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190ala-Nedd8ala72arg) Length = 434

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 78/176 (44%), Gaps = 32/176 (18%)
Query: 315 LEALKLFFAKREKEIG-NLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNI 373
           +E +++    +E+  G  +  D DD   ++++   +  RA+ + I   +    +G+   I
Sbjct: 221 IEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRI 280
Query: 374 VHAVATTNAIIAGLIVIEAIKV------------LLKDTDKYRMTYCLEHITKKMLLMPV 421
           + AVA+TNA+IA +   E  K+            +  D D    TY  E           
Sbjct: 281 IPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGL-YTYTFEA---------- 329
Query: 422 EPYEPNKSCYVCSETPLSLEINTSRSKLRDFVEKIV-KAKLGINFPLI---MHGSN 473
              E  ++C  CS+ P +++ + S +KL++ ++ +   A L +  P I   + G N
Sbjct: 330 ---ERKENCPACSQLPQNIQFSPS-AKLQEVLDYLTNSASLQMKSPAITATLEGKN 381

>pdb|3DBR|B Chain B, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190gln-Nedd8ala72arg) Length = 434

Iteration: 1
 Score =  159 bits (401), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 83/192 (43%), Positives = 120/192 (62%), Gaps = 16/192 (8%)
Query: 14  KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARD 73
           KVL++GAGG+GCELLK LALSGF+ IH+IDMDTI+VSNLNRQFLFR   +G+ KA+VA +
Sbjct: 42  KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE 101
Query: 74  AVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL-------- 125
            +    P  ++  H   ++D  FN  F++QF++++ GLD++ ARR +N + +        
Sbjct: 102 FLNDRVPNCNVVPHFNKIQD--FNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDG 159
Query: 126 ----AADVPLVESGTTGFLGQVTVHVKGKTECYEC--QPKPAPKTYPVCTITSTPSKFVH 179
               ++ VPL++ GT GF G   V + G T C EC  +  P    +P+ TI S P    H
Sbjct: 160 VLDPSSIVPLIDGGTEGFKGNAQVILPGMTACIECTLELYPPQVNFPMATIASMPRLPEH 219
Query: 180 CIVWAKDLLFAK 191
           CI + + L + K
Sbjct: 220 CIEYVRMLQWPK 231

>pdb|3DBR|B Chain B, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190gln-Nedd8ala72arg) Length = 434

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 78/176 (44%), Gaps = 32/176 (18%)
Query: 315 LEALKLFFAKREKEIG-NLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNI 373
           +E +++    +E+  G  +  D DD   ++++   +  RA+ + I   +    +G+   I
Sbjct: 221 IEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRI 280
Query: 374 VHAVATTNAIIAGLIVIEAIKV------------LLKDTDKYRMTYCLEHITKKMLLMPV 421
           + AVA+TNA+IA +   E  K+            +  D D    TY  E           
Sbjct: 281 IPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGL-YTYTFEA---------- 329
Query: 422 EPYEPNKSCYVCSETPLSLEINTSRSKLRDFVEKIV-KAKLGINFPLI---MHGSN 473
              E  ++C  CS+ P +++ + S +KL++ ++ +   A L +  P I   + G N
Sbjct: 330 ---ERKENCPACSQLPQNIQFSPS-AKLQEVLDYLTNSASLQMKSPAITATLEGKN 381

>pdb|3DBL|B Chain B, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190wt-Nedd8ala72gln) Length = 434

Iteration: 1
 Score =  159 bits (401), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 83/192 (43%), Positives = 120/192 (62%), Gaps = 16/192 (8%)
Query: 14  KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARD 73
           KVL++GAGG+GCELLK LALSGF+ IH+IDMDTI+VSNLNRQFLFR   +G+ KA+VA +
Sbjct: 42  KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE 101
Query: 74  AVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL-------- 125
            +    P  ++  H   ++D  FN  F++QF++++ GLD++ ARR +N + +        
Sbjct: 102 FLNDRVPNCNVVPHFNKIQD--FNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDG 159
Query: 126 ----AADVPLVESGTTGFLGQVTVHVKGKTECYEC--QPKPAPKTYPVCTITSTPSKFVH 179
               ++ VPL++ GT GF G   V + G T C EC  +  P    +P+ TI S P    H
Sbjct: 160 VLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMATIASMPRLPEH 219
Query: 180 CIVWAKDLLFAK 191
           CI + + L + K
Sbjct: 220 CIEYVRMLQWPK 231

>pdb|3DBL|B Chain B, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190wt-Nedd8ala72gln) Length = 434

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 78/176 (44%), Gaps = 32/176 (18%)
Query: 315 LEALKLFFAKREKEIG-NLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNI 373
           +E +++    +E+  G  +  D DD   ++++   +  RA+ + I   +    +G+   I
Sbjct: 221 IEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRI 280
Query: 374 VHAVATTNAIIAGLIVIEAIKV------------LLKDTDKYRMTYCLEHITKKMLLMPV 421
           + AVA+TNA+IA +   E  K+            +  D D    TY  E           
Sbjct: 281 IPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGL-YTYTFEA---------- 329
Query: 422 EPYEPNKSCYVCSETPLSLEINTSRSKLRDFVEKIV-KAKLGINFPLI---MHGSN 473
              E  ++C  CS+ P +++ + S +KL++ ++ +   A L +  P I   + G N
Sbjct: 330 ---ERKENCPACSQLPQNIQFSPS-AKLQEVLDYLTNSASLQMKSPAITATLEGKN 381

>pdb|1R4M|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex Length = 431

Iteration: 1
 Score =  158 bits (400), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 83/192 (43%), Positives = 120/192 (62%), Gaps = 16/192 (8%)
Query: 14  KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARD 73
           KVL++GAGG+GCELLK LALSGF+ IH+IDMDTI+VSNLNRQFLFR   +G+ KA+VA +
Sbjct: 39  KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE 98
Query: 74  AVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL-------- 125
            +    P  ++  H   ++D  FN  F++QF++++ GLD++ ARR +N + +        
Sbjct: 99  FLNDRVPNCNVVPHFNKIQD--FNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDG 156
Query: 126 ----AADVPLVESGTTGFLGQVTVHVKGKTECYEC--QPKPAPKTYPVCTITSTPSKFVH 179
               ++ VPL++ GT GF G   V + G T C EC  +  P    +P+ TI S P    H
Sbjct: 157 VLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMATIASMPRLPEH 216
Query: 180 CIVWAKDLLFAK 191
           CI + + L + K
Sbjct: 217 CIEYVRMLQWPK 228

>pdb|1R4M|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex Length = 431

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 78/176 (44%), Gaps = 32/176 (18%)
Query: 315 LEALKLFFAKREKEIG-NLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNI 373
           +E +++    +E+  G  +  D DD   ++++   +  RA+ + I   +    +G+   I
Sbjct: 218 IEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRI 277
Query: 374 VHAVATTNAIIAGLIVIEAIKV------------LLKDTDKYRMTYCLEHITKKMLLMPV 421
           + AVA+TNA+IA +   E  K+            +  D D    TY  E           
Sbjct: 278 IPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGL-YTYTFEA---------- 326
Query: 422 EPYEPNKSCYVCSETPLSLEINTSRSKLRDFVEKIV-KAKLGINFPLI---MHGSN 473
              E  ++C  CS+ P +++ + S +KL++ ++ +   A L +  P I   + G N
Sbjct: 327 ---ERKENCPACSQLPQNIQFSPS-AKLQEVLDYLTNSASLQMKSPAITATLEGKN 378

>pdb|3CMM|A Chain A, Crystal Structure Of The Uba1-Ubiquitin Complex Length = 1015

Iteration: 1
 Score =  142 bits (359), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 84/196 (42%), Positives = 110/196 (56%), Gaps = 11/196 (5%)
Query: 10  IKGAKVLMVGAGGIGCELLKTLALSGFQD-----IHIIDMDTIEVSNLNRQFLFRQSHVG 64
           I  +KV +VG+G IGCE+LK  AL G        I + D D+IE SNLNRQFLFR   VG
Sbjct: 423 IANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDSIEKSNLNRQFLFRPKDVG 482
Query: 65  QSKAKVARDAVLKFRPQMS--ITAHHANV---KDPKFNVEFFKQFNVVLNGLDNLDARRH 119
           ++K++VA +AV    P +   I A    V    +  FN  F++  + V N LDN+DAR +
Sbjct: 483 KNKSEVAAEAVCAMNPDLKGKINAKIDKVGPETEEIFNDSFWESLDFVTNALDNVDARTY 542
Query: 120 VNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVH 179
           V+R C+    PL+ESGT G  G   V +   TE Y     P  K+ P+CT+ S P+K  H
Sbjct: 543 VDRRCVFYRKPLLESGTLGTKGNTQVIIPRLTESYSSSRDPPEKSIPLCTLRSFPNKIDH 602
Query: 180 CIVWAKDLLFAKLFGD 195
            I WAK  LF   F D
Sbjct: 603 TIAWAKS-LFQGYFTD 617

>pdb|3CMM|A Chain A, Crystal Structure Of The Uba1-Ubiquitin Complex Length = 1015

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 77/324 (23%), Positives = 131/324 (40%), Gaps = 35/324 (10%)
Query: 169 TITSTPSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRXXXXXXXXXXEDVFVRRKDE--D 226
           +++S P  F  CI WA+ L F K F    ++   N                 +R     +
Sbjct: 652 SLSSKPHNFEDCIKWAR-LEFEKKFNHDIKQLLFNFPKDAKTSNGEPFWSGAKRAPTPLE 710
Query: 227 IDQYGRRIYDHVFG------YNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVA 280
            D Y    +  V        YN  + S +  +  N +  K +    ++PE     N N+ 
Sbjct: 711 FDIYNNDHFHFVVAGASLRAYNYGIKSDDSNSKPNVDEYKSVIDHMIIPE--FTPNANLK 768
Query: 281 KNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIFLEALKLFFAKREKEIGNLSFDKDDQL 340
                D    +A A+    N  D    L SS      L  F      ++  + F+KDD  
Sbjct: 769 IQVNDDDPDPNANAA----NGSDEIDQLVSSLPDPSTLAGF------KLEPVDFEKDDDT 818
Query: 341 --AVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLK 398
              +EF+TA +N RA ++ I      + K IAG I+ A+ATT +++ GL+ +E  K++  
Sbjct: 819 NHHIEFITACSNCRAQNYFIETADRQKTKFIAGRIIPAIATTTSLVTGLVNLELYKLIDN 878
Query: 399 DTD--KYRMTYCLEHIT----KKMLLMPVEPYEPNKSCYVCSETPLSLEINTSRSKLRDF 452
            TD  +Y+  +    +      + +  P   Y   K   +     +  +I     KL D 
Sbjct: 879 KTDIEQYKNGFVNLALPFFGFSEPIASPKGEYNNKKYDKIWDRFDIKGDI-----KLSDL 933
Query: 453 VEKIVKAKLGINFPLIMHGSNLLY 476
           +E   K + G+   ++ +G +LLY
Sbjct: 934 IEHFEKDE-GLEITMLSYGVSLLY 956

>pdb|1JWB|B Chain B, Structure Of The Covalent Acyl-Adenylate Form Of The Moeb-Moad Protein Complex Length = 249

Iteration: 1
 Score =  105 bits (261), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 57/150 (38%), Positives = 86/150 (57%), Gaps = 2/150 (1%)
Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
           EA+K ++VL+VG GG+GC   + LA +G  ++ ++D DT+ +SNL RQ L   + VGQ K
Sbjct: 27  EALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPK 86
Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA 127
            + ARDA+ +  P ++IT  +A + D +       + ++VL+  DN+  R  +N  C AA
Sbjct: 87  VESARDALTRINPHIAITPVNALLDDAEL-AALIAEHDLVLDCTDNVAVRNQLNAGCFAA 145
Query: 128 DVPLVESGTTGFLGQVTVHVKGKTE-CYEC 156
            VPLV        GQ+TV      E CY C
Sbjct: 146 KVPLVSGAAIRMEGQITVFTYQDGEPCYRC 175

>pdb|2PX9|A Chain A, The Intrinsic Affinity Between E2 And The Cys Domain Of E1 In Ubiquitin-Like Modifications Length = 217

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 115/229 (50%), Gaps = 33/229 (14%)
Query: 163 KTYPVCTITSTPSKFVHCIVWAKDLLFAKLFG--DKNQENDLNVRXXXXXXXXXXEDVFV 220
           +T+P CTI +TPS+ +HCIVWAK  LF +LFG  D +QE   +             +   
Sbjct: 3   RTFPGCTIRNTPSEPIHCIVWAK-YLFNQLFGEEDADQEVSPDRADPEAAWEPTEAEARA 61
Query: 221 RRKDEDID-------QYGR-------RIYDHVFGYNIEVASSNEETWKNRNRPKPIYSAD 266
           R  +ED D       ++ +       +++  +F  +I    + ++ W+ R  P P+  A+
Sbjct: 62  RASNEDGDIKRISTKEWAKSTGYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAE 121
Query: 267 VMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIF---LEALKLFFA 323
           V  +   E N +  +N             LGLK+ Q    +   +R+F   +E L++  A
Sbjct: 122 VQSQG-EETNASDQQN----------EPQLGLKD-QQVLDVKSYARLFSKSIETLRVHLA 169
Query: 324 KREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGN 372
           ++  +   L +DKDD  A++FVT+AAN+R   F +++ S F+ K +AGN
Sbjct: 170 EK-GDGAELIWDKDDPSAMDFVTSAANLRMHIFSMNMKSRFDIKSMAGN 217

>pdb|3H5A|A Chain A, Crystal Structure Of E. Coli Mccb Length = 358

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 88/155 (56%), Gaps = 9/155 (5%)
Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
           + +K AKV+++G GGIG  +   LA SG  +I +ID D IE +NL RQ LF +  VG++K
Sbjct: 111 DKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNK 170
Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDN-LDARRHVNRLCLA 126
            +V +  +LK   ++S++    N+ D   ++    + ++ +   D+  +    VN+ C+ 
Sbjct: 171 TEVIKRELLKRNSEISVSEIALNINDYT-DLHKVPEADIWVVSADHPFNLINWVNKYCVR 229
Query: 127 ADVPLVESGTTGFLGQVTV----HVKGKTECYECQ 157
           A+ P + +   G++  + V    +V GKT CYECQ
Sbjct: 230 ANQPYINA---GYVNDIAVFGPLYVPGKTGCYECQ 261

>pdb|3H5N|A Chain A, Crystal Structure Of E. Coli Mccb + Atp Length = 353

Iteration: 1
 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 88/155 (56%), Gaps = 9/155 (5%)
Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
           + +K AKV+++G GGIG  +   LA SG  +I +ID D IE +NL RQ LF +  VG++K
Sbjct: 114 DKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNK 173
Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDN-LDARRHVNRLCLA 126
            +V +  +LK   ++S++    N+ D   ++    + ++ +   D+  +    VN+ C+ 
Sbjct: 174 TEVIKRELLKRNSEISVSEIALNINDYT-DLHKVPEADIWVVSADHPFNLINWVNKYCVR 232
Query: 127 ADVPLVESGTTGFLGQVTV----HVKGKTECYECQ 157
           A+ P + +   G++  + V    +V GKT CYECQ
Sbjct: 233 ANQPYINA---GYVNDIAVFGPLYVPGKTGCYECQ 264

>pdb|1ZFN|A Chain A, Structural Analysis Of Escherichia Coli Thif Length = 253

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 76/145 (52%), Gaps = 2/145 (1%)
Query: 13  AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVAR 72
           ++VL++G GG+G      LA +G   + + D D + +SNL RQ LF    + + K++V++
Sbjct: 31  SQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQ 90
Query: 73  DAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLV 132
             + +  P + +TA    +       +   + +VVL+  DN+  R+ +N  C+A + PL+
Sbjct: 91  QRLTQLNPDIQLTALQQRLTGEALK-DAVARADVVLDCTDNMATRQEINAACVALNTPLI 149
Query: 133 ESGTTGFLGQVTVHV-KGKTECYEC 156
            +   GF GQ+ V     +  CY C
Sbjct: 150 TASAVGFGGQLMVLTPPWEQGCYRC 174

>pdb|1ZUD|1 Chain 1, Structure Of This-Thif Protein Complex Length = 251

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 76/145 (52%), Gaps = 2/145 (1%)
Query: 13  AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVAR 72
           ++VL++G GG+G      LA +G   + + D D + +SNL RQ LF    + + K++V++
Sbjct: 29  SQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQ 88
Query: 73  DAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLV 132
             + +  P + +TA    +       +   + +VVL+  DN+  R+ +N  C+A + PL+
Sbjct: 89  QRLTQLNPDIQLTALQQRLTGEALK-DAVARADVVLDCTDNMATRQEINAACVALNTPLI 147
Query: 133 ESGTTGFLGQVTVHV-KGKTECYEC 156
            +   GF GQ+ V     +  CY C
Sbjct: 148 TASAVGFGGQLMVLTPPWEQGCYRC 172

>pdb|3GUC|A Chain A, Human Ubiquitin-Activating Enzyme 5 In Complex With Amppnp Length = 292

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 22/147 (14%)
Query: 29  KTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88
           + L   G   + + D D +E++N+NR F F+    G SK + A   +    P +    H+
Sbjct: 53  EMLTRCGIGKLLLFDYDKVELANMNRLF-FQPHQAGLSKVQAAEHTLRNINPDVLFEVHN 111
Query: 89  ANVKDPKFNVEFFKQF---------------NVVLNGLDNLDARRHVNRLCLAADVPLVE 133
            N+      VE F+ F               ++VL+ +DN +AR  +N  C       +E
Sbjct: 112 YNIT----TVENFQHFMDRISNGGLEEGKPVDLVLSCVDNFEARMTINTACNELGQTWME 167
Query: 134 SGTT--GFLGQVTVHVKGKTECYECQP 158
           SG +     G + + + G++ C+ C P
Sbjct: 168 SGVSENAVSGHIQLIIPGESACFACAP 194

>pdb|1Y8Q|A Chain A, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex Length = 346

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 65/133 (48%), Gaps = 4/133 (3%)
Query: 10  IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAK 69
           ++ ++VL+VG  G+G E+ K L L+G + + ++D + +   +   QFL R   VG+++A+
Sbjct: 34  LRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAE 93
Query: 70  VARDAVLKFRPQMSITAHHANV-KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAAD 128
            + +      P + +     ++ K P+    FF QF+ V     + D    V+++C    
Sbjct: 94  ASLERAQNLNPMVDVKVDTEDIEKKPE---SFFTQFDAVCLTCCSRDVIVKVDQICHKNS 150
Query: 129 VPLVESGTTGFLG 141
           +        G+ G
Sbjct: 151 IKFFTGDVFGYHG 163

>pdb|4GSK|A Chain A, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex Length = 615

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 1   MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQ 60
           ++ +  L+ IK  KVL++GAG +GC + + L   G + I  +D  T+  SN  RQ L+  
Sbjct: 315 ILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNF 374
Query: 61  SHVGQSKAKVARDAVLKFRPQMSITA 86
              G+ KA++A  ++ +  P M  T 
Sbjct: 375 EDAGKPKAELAAASLKRIFPLMDATG 400

>pdb|3VH1|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-595) Length = 598

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 1   MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQ 60
           ++ +  L+ IK  KVL++GAG +GC + + L   G + I  +D  T+  SN  RQ L+  
Sbjct: 316 ILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNF 375
Query: 61  SHVGQSKAKVARDAVLKFRPQMSITA 86
              G+ KA++A  ++ +  P M  T 
Sbjct: 376 EDCGKPKAELAAASLKRIFPLMDATG 401

>pdb|3VH2|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-613) Length = 616

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 1   MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQ 60
           ++ +  L+ IK  KVL++GAG +GC + + L   G + I  +D  T+  SN  RQ L+  
Sbjct: 316 ILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNF 375
Query: 61  SHVGQSKAKVARDAVLKFRPQMSITA 86
              G+ KA++A  ++ +  P M  T 
Sbjct: 376 EDCGKPKAELAAASLKRIFPLMDATG 401

>pdb|4GSL|A Chain A, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex Length = 615

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 1   MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQ 60
           ++ +  L+ IK  KVL++GAG +GC + + L   G + I  +D  T+  SN  RQ L+  
Sbjct: 315 ILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNF 374
Query: 61  SHVGQSKAKVARDAVLKFRPQMSITA 86
              G+ KA++A  ++ +  P M  T 
Sbjct: 375 EDCGKPKAELAAASLKRIFPLMDATG 400

>pdb|3T7E|A Chain A, Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E2 Architecture And Mechanism In The Autophagy Pathway Length = 344

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 1   MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQ 60
           ++ +  L+ IK  KVL++GAG +GC + + L   G + I  +D  T+  SN  RQ L+  
Sbjct: 27  ILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNF 86
Query: 61  SHVGQSKAKVARDAVLKFRPQMSITA 86
              G+ KA++A  ++ +  P M  T 
Sbjct: 87  EDCGKPKAELAAASLKRIFPLMDATG 112

>pdb|3VH3|A Chain A, Crystal Structure Of Atg7ctd-Atg8 Complex Length = 340

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 1   MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQ 60
           ++ +  L+ IK  KVL++GAG +GC + + L   G + I  +D  T+  SN  RQ L+  
Sbjct: 23  ILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNF 82
Query: 61  SHVGQSKAKVARDAVLKFRPQMSITA 86
              G+ KA++A  ++ +  P M  T 
Sbjct: 83  EDCGKPKAELAAASLKRIFPLMDATG 108

>pdb|3RUI|A Chain A, Crystal Structure Of Atg7c-Atg8 Complex Length = 340

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 46/86 (53%)
Query: 1   MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQ 60
           ++ +  L+ IK  KVL++GAG +GC + + L   G + I  +D  T+  SN  RQ L+  
Sbjct: 23  ILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNF 82
Query: 61  SHVGQSKAKVARDAVLKFRPQMSITA 86
              G+ KA++A  ++ +  P    T 
Sbjct: 83  EDCGKPKAELAAASLKRIFPLXDATG 108

>pdb|3GZN|A Chain A, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8 And Mln4924 Length = 534

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 69/146 (47%), Gaps = 9/146 (6%)
Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
           EA++ A V ++ A   G E+LK L L G     IID + +   +    F  ++S +G+++
Sbjct: 26  EALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNR 85
Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNV-----EFFKQFNVVLNGLDNLDARRHVNR 122
           A    +A ++F  +++     + V++   N+      FF +F VV+           +  
Sbjct: 86  A----EAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLAD 141
Query: 123 LCLAADVPLVESGTTGFLGQVTVHVK 148
           +   + +PL+   T G +G + + +K
Sbjct: 142 VLWNSQIPLLICRTYGLVGYMRIIIK 167

>pdb|1R4M|A Chain A, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex Length = 529

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 69/146 (47%), Gaps = 9/146 (6%)
Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
           EA++ A V ++ A   G E+LK L L G     IID + +   +    F  ++S +G+++
Sbjct: 26  EALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNR 85
Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNV-----EFFKQFNVVLNGLDNLDARRHVNR 122
           A    +A ++F  +++     + V++   N+      FF +F VV+           +  
Sbjct: 86  A----EAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLAD 141
Query: 123 LCLAADVPLVESGTTGFLGQVTVHVK 148
           +   + +PL+   T G +G + + +K
Sbjct: 142 VLWNSQIPLLICRTYGLVGYMRIIIK 167

>pdb|1TT5|A Chain A, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 Interaction Required For Optimal Conjugation Of The Ubiquitin-Like Protein Nedd8 Length = 531

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 69/146 (47%), Gaps = 9/146 (6%)
Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
           EA++ A V ++ A   G E+LK L L G     IID + +   +    F  ++S +G+++
Sbjct: 28  EALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNR 87
Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNV-----EFFKQFNVVLNGLDNLDARRHVNR 122
           A    +A ++F  +++     + V++   N+      FF +F VV+           +  
Sbjct: 88  A----EAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLAD 143
Query: 123 LCLAADVPLVESGTTGFLGQVTVHVK 148
           +   + +PL+   T G +G + + +K
Sbjct: 144 VLWNSQIPLLICRTYGLVGYMRIIIK 169

>pdb|2NVU|A Chain A, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 536

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 69/146 (47%), Gaps = 9/146 (6%)
Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
           EA++ A V ++ A   G E+LK L L G     IID + +   +    F  ++S +G+++
Sbjct: 28  EALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNR 87
Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNV-----EFFKQFNVVLNGLDNLDARRHVNR 122
           A    +A ++F  +++     + V++   N+      FF +F VV+           +  
Sbjct: 88  A----EAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLAD 143
Query: 123 LCLAADVPLVESGTTGFLGQVTVHVK 148
           +   + +PL+   T G +G + + +K
Sbjct: 144 VLWNSQIPLLICRTYGLVGYMRIIIK 169

>pdb|1YOV|A Chain A, Insights Into The Ubiquitin Transfer Cascade From The Refined Structure Of The Activating Enzyme For Nedd8 Length = 537

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 69/146 (47%), Gaps = 9/146 (6%)
Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
           EA++ A V ++ A   G E+LK L L G     IID + +   +    F  ++S +G+++
Sbjct: 29  EALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNR 88
Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNV-----EFFKQFNVVLNGLDNLDARRHVNR 122
           A    +A ++F  +++     + V++   N+      FF +F VV+           +  
Sbjct: 89  A----EAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLAD 144
Query: 123 LCLAADVPLVESGTTGFLGQVTVHVK 148
           +   + +PL+   T G +G + + +K
Sbjct: 145 VLWNSQIPLLICRTYGLVGYMRIIIK 170

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	563
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	1e-171
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	1e-106
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	3e-58
2nvu_B	805	Maltose binding protein/NEDD8-activating enzyme E1	2e-99
2nvu_B	805	Maltose binding protein/NEDD8-activating enzyme E1	9e-33
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	5e-95
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	2e-28
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	7e-51
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	1e-38
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	3e-38
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	3e-38
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	5e-37
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	2e-36
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	4e-35
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	2e-31
1z7l_A	276	Ubiquitin-activating enzyme E1 1; SCCH, second cat	4e-31
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-11

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A Length = 640

 Score =  499 bits (1285), Expect = e-171
 Identities = 199/509 (39%), Positives = 302/509 (59%), Gaps = 37/509 (7%)

Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
           EA+ G +VL+VGAGGIGCELLK L L+GF  I +ID+DTI+VSNLNRQFLF++ HVG+SK
Sbjct: 13  EAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSK 72

Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA 127
           A+VA+++VL+F P+ +I A+H ++ +P +NVEFF+QF +V+N LDN  AR HVNR+CLAA
Sbjct: 73  AQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMCLAA 132

Query: 128 DVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDL 187
           DVPL+ESGT G+LGQVT   KG TECYEC PKP  +T+P  TI +TPS+ +HCIVWAK  
Sbjct: 133 DVPLIESGTAGYLGQVTTIKKGVTECYECHPKPTQRTFPGATIRNTPSEPIHCIVWAKY- 191

Query: 188 LFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKD----------------EDIDQYG 231
           LF +LFG+++ + +++   +D  ++    +   R +                 +      
Sbjct: 192 LFNQLFGEEDADQEVSPDRADPEAAWEPTEAEARARASNEDGDIKRISTKEWAKSTGYDP 251

Query: 232 RRIYDHVFGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVS 291
            +++  +F  +I    + ++ W+ R  P P+  A+V  +               + S   
Sbjct: 252 VKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAEVQSQGEE-----------TNASDQQ 300

Query: 292 AMASLGLKNPQDTWTLLESSRIFLEALKLF--FAKREKEIGNLSFDKDDQLAVEFVTAAA 349
               LGLK+ Q    +   +R+F ++++        + +   L +DKDD  A++FVT+AA
Sbjct: 301 NEPQLGLKD-QQVLDVKSYARLFSKSIETLRVHLAEKGDGAELIWDKDDPSAMDFVTSAA 359

Query: 350 NIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRMTYCL 409
           N+R   F +++ S F+ K +AGNI+ A+ATTNA+IAGLIV+E +K+L    D+ R  +  
Sbjct: 360 NLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKILSGKIDQCRTIFLN 419

Query: 410 EHIT-KKMLLMPVEPYEPNKSCYVCSETP-LSLEINTSRSKLRDFVEKIVKAKLGINFPL 467
           +    +K LL+P     PN +CYVC+  P +++ +N  +  +    +KIVK K  +  P 
Sbjct: 420 KQPNPRKKLLVPCALDPPNPNCYVCASKPEVTVRLNVHKVTVLTLQDKIVKEKFAMVAPD 479

Query: 468 IMHGSNLLYEVGDDLDEVEVANYAANLEK 496
           +     +    G  L   E     AN  K
Sbjct: 480 VQ----IEDGKGTILISSEEGETEANNHK 504

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} Length = 1015

 Score =  340 bits (872), Expect = e-106
 Identities = 141/542 (26%), Positives = 225/542 (41%), Gaps = 79/542 (14%)

Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGF-----QDIHIIDMDTIEVSNLNRQFLFRQSH 62
           + I  +KV +VG+G IGCE+LK  AL G        I + D D+IE SNLNRQFLFR   
Sbjct: 421 KKIANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDSIEKSNLNRQFLFRPKD 480

Query: 63  VGQSKAKVARDAVLKFRPQMSITAHH-----ANVKDPKFNVEFFKQFNVVLNGLDNLDAR 117
           VG++K++VA +AV    P +    +          +  FN  F++  + V N LDN+DAR
Sbjct: 481 VGKNKSEVAAEAVCAMNPDLKGKINAKIDKVGPETEEIFNDSFWESLDFVTNALDNVDAR 540

Query: 118 RHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKF 177
            +V+R C+    PL+ESGT G  G   V +   TE Y     P  K+ P+CT+ S P+K 
Sbjct: 541 TYVDRRCVFYRKPLLESGTLGTKGNTQVIIPRLTESYSSSRDPPEKSIPLCTLRSFPNKI 600

Query: 178 VHCIVWAKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVR--------------RK 223
            H I WAK  LF   F D  +  ++ +   +       +   V+                
Sbjct: 601 DHTIAWAKS-LFQGYFTDSAENVNMYLTQPNFVEQTLKQSGDVKGVLESISDSLSSKPHN 659

Query: 224 DEDIDQYGRRIYDHVFGYNIE----------VASSNEETWKNRNR-PKPI-YSAD----- 266
            ED  ++ R  ++  F ++I+            S+ E  W    R P P+ +        
Sbjct: 660 FEDCIKWARLEFEKKFNHDIKQLLFNFPKDAKTSNGEPFWSGAKRAPTPLEFDIYNNDHF 719

Query: 267 ---VMPENLTEQNGNVAKNCVVDTSSVSAMASL----------------------GLKNP 301
              V   +L   N  +  +      +V    S+                           
Sbjct: 720 HFVVAGASLRAYNYGIKSDDSNSKPNVDEYKSVIDHMIIPEFTPNANLKIQVNDDDPDPN 779

Query: 302 QDTWTLLESSRIFLEALK--LFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGIS 359
            +     +     + +L      A  + E  +   D D    +EF+TA +N RA ++ I 
Sbjct: 780 ANAANGSDEIDQLVSSLPDPSTLAGFKLEPVDFEKDDDTNHHIEFITACSNCRAQNYFIE 839

Query: 360 LHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLL--KDTDKYRMTYCLEHITKKML 417
                + K IAG I+ A+ATT +++ GL+ +E  K++    D ++Y+  +    +     
Sbjct: 840 TADRQKTKFIAGRIIPAIATTTSLVTGLVNLELYKLIDNKTDIEQYKNGFVNLALP---F 896

Query: 418 LMPVEPYEPNKSCYVCSETP---LSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNL 474
               EP    K  Y   +        +I     KL D +E   K   G+   ++ +G +L
Sbjct: 897 FGFSEPIASPKGEYNNKKYDKIWDRFDIKGDI-KLSDLIEHFEK-DEGLEITMLSYGVSL 954

Query: 475 LY 476
           LY
Sbjct: 955 LY 956

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} Length = 1015

 Score =  209 bits (532), Expect = 3e-58
 Identities = 73/458 (15%), Positives = 154/458 (33%), Gaps = 52/458 (11%)

Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
             ++ + VL++G  G+G E+ K + L+G + + + D + +++++L+ QF   +  +GQ +
Sbjct: 23  LKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLSTQFFLTEKDIGQKR 82

Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFN-VVLNGLDNLDARRHVNRLCLA 126
             V R  + +            NV D   +V    QF  VV     +L+ +  +N  C +
Sbjct: 83  GDVTRAKLAELNA-----YVPVNVLDSLDDVTQLSQFQVVVATDTVSLEDKVKINEFCHS 137

Query: 127 ADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKD 186
           + +  + S T G  G   V +  +    +   +  P+T  V  I   P   V  +   + 
Sbjct: 138 SGIRFISSETRGLFGNTFVDLGDEFTVLDPTGEE-PRTGMVSDI--EPDGTVTMLDDNRH 194

Query: 187 LLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQYGRRIYDHVFGYNIEVA 246
            L     G+  + +++         +    +V                Y    G   EV 
Sbjct: 195 GLED---GNFVRFSEVEGLDKLNDGTLFKVEVLGPFAFRIGSVKEYGEYKK-GGIFTEVK 250

Query: 247 SSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWT 306
              + ++      K +      PE +                                + 
Sbjct: 251 VPRKISF------KSLKQQLSNPEFVFSDFAK--------------------------FD 278

Query: 307 LLESSRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFE- 365
                 +  +AL  F  +   E+     D+D    ++ VT  +  +    G  +    + 
Sbjct: 279 RAAQLHLGFQALHQFAVRHNGELPRTMNDEDANELIKLVTDLSVQQPEVLGEGVDVNEDL 338

Query: 366 AKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRMTYCLEHITKKMLLMPVEPYE 425
            K ++      +    A   GL+  E +K     + K+       +      L   + + 
Sbjct: 339 IKELSYQARGDIPGVVAFFGGLVAQEVLKAC---SGKFTPLKQFMYFDSLESLPDPKNFP 395

Query: 426 PNKSCYVCSETPLSLEINTSRSKLRDFVEKIVKAKLGI 463
            N+       +    +I        DF +KI  +K+ +
Sbjct: 396 RNEKTTQPVNSRYDNQIAVFG---LDFQKKIANSKVFL 430

>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1 Length = 805

 Score =  318 bits (816), Expect = 2e-99
 Identities = 93/258 (36%), Positives = 135/258 (52%), Gaps = 21/258 (8%)

Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
             +   KVL++GAGG+GCELLK LALSGF+ IH+IDMDTI+VSNLNRQFLFR   +G+ K
Sbjct: 407 FLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPK 466

Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL-- 125
           A+VA + +    P  ++  H   ++D  FN  F++QF++++ GLD++ ARR +N + +  
Sbjct: 467 AEVAAEFLNDRVPNCNVVPHFNKIQD--FNDTFYRQFHIIVCGLDSIIARRWINGMLISL 524

Query: 126 ----------AADVPLVESGTTGFLGQVTVHVKGKTECYECQPK--PAPKTYPVCTITST 173
                     ++ VPL++ GT GF G   V + G T C EC  +  P    +P+CTI S 
Sbjct: 525 LNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASM 584

Query: 174 PSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQYGRR 233
           P    HCI + + L + K                        +    R    +I     R
Sbjct: 585 PRLPEHCIEYVRMLQWPKEQPFGEGVPLDG--DDPEHIQWIFQKSLERASQYNIRGVTYR 642

Query: 234 IYDHVFGYNIE--VASSN 249
           +   V    I   VAS+N
Sbjct: 643 LTQGVVK-RIIPAVASTN 659

>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1 Length = 805

 Score =  132 bits (334), Expect = 9e-33
 Identities = 40/185 (21%), Positives = 73/185 (39%), Gaps = 11/185 (5%)

Query: 317 ALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHA 376
              L + K +     +  D DD   ++++   +  RA+ + I   +    +G+   I+ A
Sbjct: 595 VRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPA 654

Query: 377 VATTNAIIAGLIVIEAIKVLLKDTDKYRMTYCLEHITKKMLLMPVEPYEPNKSCYVCSET 436
           VA+TNA+IA +   E  K+             L       L       E  ++C  CS+ 
Sbjct: 655 VASTNAVIAAVCATEVFKIATSAYIPLN--NYLVFNDVDGLYTYTFEAERKENCPACSQL 712

Query: 437 PLSLEINTSRSKLRDFVEKIV-KAKLGINFPLIMH----GSNLLYEVGDDLDEVEVANYA 491
           P +++ + S +KL++ ++ +   A L +  P I       +  LY       E       
Sbjct: 713 PQNIQFSPS-AKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEER---TR 768

Query: 492 ANLEK 496
            NL K
Sbjct: 769 PNLSK 773

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* Length = 434

 Score =  296 bits (758), Expect = 5e-95
 Identities = 94/257 (36%), Positives = 136/257 (52%), Gaps = 19/257 (7%)

Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
             +   KVL++GAGG+GCELLK LALSGF+ IH+IDMDTI+VSNLNRQFLFR   +G+ K
Sbjct: 36  FLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPK 95

Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL-- 125
           A+VA + +    P  ++  H   ++D  FN  F++QF++++ GLD++ ARR +N + +  
Sbjct: 96  AEVAAEFLNDRVPNCNVVPHFNKIQD--FNDTFYRQFHIIVCGLDSIIARRWINGMLISL 153

Query: 126 ----------AADVPLVESGTTGFLGQVTVHVKGKTECYECQPK--PAPKTYPVCTITST 173
                     ++ VPL++ GT GF G   V + G T C EC  +  P    +P+CTI S 
Sbjct: 154 LNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASM 213

Query: 174 PSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQYGRR 233
           P    HCI + + L + K       E                +    R    +I     R
Sbjct: 214 PRLPEHCIEYVRMLQWPKEQ--PFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYR 271

Query: 234 IYDHVFGYNI-EVASSN 249
           +   V    I  VAS+N
Sbjct: 272 LTQGVVKRIIPAVASTN 288

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* Length = 434

 Score =  116 bits (293), Expect = 2e-28
 Identities = 40/185 (21%), Positives = 73/185 (39%), Gaps = 11/185 (5%)

Query: 317 ALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHA 376
              L + K +     +  D DD   ++++   +  RA+ + I   +    +G+   I+ A
Sbjct: 224 VRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPA 283

Query: 377 VATTNAIIAGLIVIEAIKVLLKDTDKYRMTYCLEHITKKMLLMPVEPYEPNKSCYVCSET 436
           VA+TNA+IA +   E  K+             L       L       E  ++C  CS+ 
Sbjct: 284 VASTNAVIAAVCATEVFKIATSAYIPLN--NYLVFNDVDGLYTYTFEAERKENCPACSQL 341

Query: 437 PLSLEINTSRSKLRDFVEKIV-KAKLGINFPLIMH----GSNLLYEVGDDLDEVEVANYA 491
           P +++ + S +KL++ ++ +   A L +  P I       +  LY       E       
Sbjct: 342 PQNIQFSPS-AKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEER---TR 397

Query: 492 ANLEK 496
            NL K
Sbjct: 398 PNLSK 402

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* Length = 531

 Score =  182 bits (462), Expect = 7e-51
 Identities = 40/199 (20%), Positives = 78/199 (39%), Gaps = 12/199 (6%)

Query: 5   RQL--------EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQF 56
           RQL        EA++ A V ++ A   G E+LK L L G     IID + +   +    F
Sbjct: 17  RQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNF 76

Query: 57  LFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD-PKFNVEFFKQFNVVLNGLDNLD 115
             ++S +G+++A+ A + + +    +S +    + ++    +  FF +F VV+       
Sbjct: 77  FLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPES 136

Query: 116 ARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPS 175
               +  +   + +PL+   T G +G + + +K           P      +      P 
Sbjct: 137 TSLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESH---PDNALEDLRLDKPFPE 193

Query: 176 KFVHCIVWAKDLLFAKLFG 194
              H   +  D +  K   
Sbjct: 194 LREHFQSYDLDHMEKKDHS 212

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* Length = 346

 Score =  142 bits (361), Expect = 3e-38
 Identities = 39/184 (21%), Positives = 80/184 (43%), Gaps = 11/184 (5%)

Query: 5   RQL--------EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQF 56
           RQ+        + ++ ++VL+VG  G+G E+ K L L+G + + ++D + +   +   QF
Sbjct: 21  RQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQF 80

Query: 57  LFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDA 116
           L R   VG+++A+ + +      P + +     +++       FF QF+ V     + D 
Sbjct: 81  LIRTGSVGRNRAEASLERAQNLNPMVDVKVDTEDIEK--KPESFFTQFDAVCLTCCSRDV 138

Query: 117 RRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSK 176
              V+++C    +        G+ G    ++ G+ E  E + K A  +  V     T   
Sbjct: 139 IVKVDQICHKNSIKFFTGDVFGYHGYTFANL-GEHEFVEEKTKVAKVSQGVEDGPDTKRA 197

Query: 177 FVHC 180
            +  
Sbjct: 198 KLDS 201

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* Length = 292

 Score =  141 bits (357), Expect = 3e-38
 Identities = 42/168 (25%), Positives = 72/168 (42%), Gaps = 14/168 (8%)

Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
           E I+   V +VG GG+G    + L   G   + + D D +E++N+NR   F+    G SK
Sbjct: 32  EKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRL-FFQPHQAGLSK 90

Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNVEF-----------FKQFNVVLNGLDNLDA 116
            + A   +    P +    H+ N+   +    F            K  ++VL+ +DN +A
Sbjct: 91  VQAAEHTLRNINPDVLFEVHNYNITTVENFQHFMDRISNGGLEEGKPVDLVLSCVDNFEA 150

Query: 117 RRHVNRLCLAADVPLVESG--TTGFLGQVTVHVKGKTECYECQPKPAP 162
           R  +N  C       +ESG       G + + + G++ C+ C P    
Sbjct: 151 RMTINTACNELGQTWMESGVSENAVSGHIQLIIPGESACFACAPPLVV 198

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* Length = 249

 Score =  136 bits (346), Expect = 5e-37
 Identities = 57/162 (35%), Positives = 88/162 (54%), Gaps = 2/162 (1%)

Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
           EA+K ++VL+VG GG+GC   + LA +G  ++ ++D DT+ +SNL RQ L   + VGQ K
Sbjct: 27  EALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPK 86

Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA 127
            + ARDA+ +  P ++IT  +A + D         + ++VL+  DN+  R  +N  C AA
Sbjct: 87  VESARDALTRINPHIAITPVNALL-DDAELAALIAEHDLVLDCTDNVAVRNQLNAGCFAA 145

Query: 128 DVPLVESGTTGFLGQVTV-HVKGKTECYECQPKPAPKTYPVC 168
            VPLV        GQ+TV   +    CY C  +   +    C
Sbjct: 146 KVPLVSGAAIRMEGQITVFTYQDGEPCYRCLSRLFGENALTC 187

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A Length = 251

 Score =  135 bits (342), Expect = 2e-36
 Identities = 43/162 (26%), Positives = 81/162 (50%), Gaps = 2/162 (1%)

Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
           + +  ++VL++G GG+G      LA +G   + + D D + +SNL RQ LF    + + K
Sbjct: 24  QKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPK 83

Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA 127
           ++V++  + +  P + +TA    +   +   +   + +VVL+  DN+  R+ +N  C+A 
Sbjct: 84  SQVSQQRLTQLNPDIQLTALQQRL-TGEALKDAVARADVVLDCTDNMATRQEINAACVAL 142

Query: 128 DVPLVESGTTGFLGQVTV-HVKGKTECYECQPKPAPKTYPVC 168
           + PL+ +   GF GQ+ V     +  CY C      +    C
Sbjct: 143 NTPLITASAVGFGGQLMVLTPPWEQGCYRCLWPDNQEPERNC 184

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* Length = 340

 Score =  134 bits (339), Expect = 4e-35
 Identities = 38/186 (20%), Positives = 73/186 (39%), Gaps = 24/186 (12%)

Query: 7   LEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQS 66
           L+ IK  KVL++GAG +GC + + L   G + I  +D  T+  SN  RQ L+     G+ 
Sbjct: 29  LDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKP 88

Query: 67  KAKVARDAVLKFRPQMSITAHHANVKDPKFNV--------------EFFKQFNVVLNGLD 112
           KA++A  ++ +  P M  T    ++      +                 K+ +++   +D
Sbjct: 89  KAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVD 148

Query: 113 NLDARRHVNRLCLAADVPLVESGTTGFLGQVTV-------HVKGKTECYEC--QPKPAPK 163
           + ++R   + L    +  ++ +   GF   + +           +  CY C     P   
Sbjct: 149 SRESRWLPSLLSNIENKTVI-NAALGFDSYLVMRHGNRDEQSSKQLGCYFCHDVVAPTDS 207

Query: 164 TYPVCT 169
                 
Sbjct: 208 LTDRTL 213

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A Length = 598

 Score =  128 bits (322), Expect = 2e-31
 Identities = 38/185 (20%), Positives = 73/185 (39%), Gaps = 24/185 (12%)

Query: 7   LEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQS 66
           L+ IK  KVL++GAG +GC + + L   G + I  +D  T+  SN  RQ L+     G+ 
Sbjct: 322 LDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKP 381

Query: 67  KAKVARDAVLKFRPQMSITAHHANVKDPKFNV--------------EFFKQFNVVLNGLD 112
           KA++A  ++ +  P M  T    ++      +                 K+ +++   +D
Sbjct: 382 KAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVD 441

Query: 113 NLDARRHVNRLCLAADVPLVESGTTGFLGQVTV-------HVKGKTECYEC--QPKPAPK 163
           + ++R   + L    +  ++ +   GF   + +           +  CY C     P   
Sbjct: 442 SRESRWLPSLLSNIENKTVI-NAALGFDSYLVMRHGNRDEQSSKQLGCYFCHDVVAPTDS 500

Query: 164 TYPVC 168
                
Sbjct: 501 LTDRT 505

>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine half-domain, ligase; HET: TBR; 2.80A {Mus musculus} Length = 276

 Score =  121 bits (303), Expect = 4e-31
 Identities = 47/276 (17%), Positives = 95/276 (34%), Gaps = 55/276 (19%)

Query: 153 CYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQ------------EN 200
            +        K+ P+CT+ + P+   H + WA+D  F  LF    +            E 
Sbjct: 2   GHHHHHHEFEKSIPICTLKNFPNAIEHTLQWARD-EFEGLFKQPAENVNQYLTDSKFVER 60

Query: 201 DLNVRSSDASSSAHAEDVFVRRKD----EDIDQYGRRIYDHVFGYNIE----------VA 246
            L +  +       A    +  +      D   +    +   +  NI           + 
Sbjct: 61  TLRLAGTQPLEVLEAVQRSLVLQRPQTWGDCVTWACHHWHTQYCNNIRQLLHNFPPDQLT 120

Query: 247 SSNEETWKNRNR-PKPI--------------YSADVMPENL-------TEQNGNVAKNCV 284
           SS    W    R P P+               +A++  +              ++ ++  
Sbjct: 121 SSGAPFWSGPKRCPHPLTFDVNNTLHLDYVMAAANLFAQTYGLTGSQDRAAVASLLQSVQ 180

Query: 285 VDTSSVSAMASLGL--KNPQDTWTLLESSRI--FLEALKLFFAKREKEIGNLSFDKDDQ- 339
           V   +  +   + +  +  Q     ++ SR+      L         ++  + F+KDD  
Sbjct: 181 VPEFTPKSGVKIHVSDQELQSANASVDDSRLEELKATLPSPDKLPGFKMYPIDFEKDDDS 240

Query: 340 -LAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIV 374
              ++F+ AA+N+RA ++ IS     ++K IAG I+
Sbjct: 241 NFHMDFIVAASNLRAENYDISPADRHKSKLIAGKII 276

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.1 bits (155), Expect = 8e-11
 Identities = 85/574 (14%), Positives = 165/574 (28%), Gaps = 181/574 (31%)

Query: 33  LSGFQDIHIIDMDTIEVSNLNRQFLFRQ--SHVGQSKAKVAR-------------DAVLK 77
           LS F+D  + + D  +V ++ +  L ++   H+  SK  V+              + V K
Sbjct: 22  LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK 81

Query: 78  F-----RPQMS--ITAHHANVKDPKFNVEFF-KQFNVVLNGLDNLDARRHVNRL------ 123
           F     R      ++      + P      + +Q + + N      A+ +V+RL      
Sbjct: 82  FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF-AKYNVSRLQPYLKL 140

Query: 124 ------------------------CLAADVPLVESGTTGFLGQV---TVHVKGKTECYEC 156
                                    +A DV L          ++    +         E 
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL---KNCNSPET 197

Query: 157 QPKPAPKTY-----PVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQENDL----NVRSS 207
             +   K          + +   S     I   +  L  +L   K  EN L    NV+++
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL-RRLLKSKPYENCLLVLLNVQNA 256

Query: 208 DASSSAHAEDVFVR-----RKDEDIDQYGRRIYDHVFGYNIEVASSNEETWKNRNRPKPI 262
            A    +A ++  +     R  +  D        H+   +  +  + +E        K +
Sbjct: 257 KA---WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV-------KSL 306

Query: 263 YS--ADVMPENLTEQNGNVAKNCVVDTS--SVSAMASLGLKNPQDTW---------TLLE 309
                D  P++L  +        V+ T+   +S +A   +++   TW          L  
Sbjct: 307 LLKYLDCRPQDLPRE--------VLTTNPRRLSIIAES-IRDGLATWDNWKHVNCDKLTT 357

Query: 310 SSRIFLEAL------KLF-----FAKREK------EI--GNLSFDKDDQLAVEFVT-AAA 349
                L  L      K+F     F            +   ++       +  +    +  
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417

Query: 350 NIRAASFGISLHSL-FEAKGIAGNI--VHAVATTNAIIAGLIVIEAIKVLLKDTDKYRM- 405
             +     IS+ S+  E K    N   +H      +I+                D Y + 
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALH-----RSIV----------------DHYNIP 456

Query: 406 -TYCLEHITKKMLLMPVEPYEPNKSCYVCS-------ETPLSLEINTSRSKLRDFVEKIV 457
            T+  + +          PY      Y  S              +   R    DF  + +
Sbjct: 457 KTFDSDDLIP--------PYLDQ---YFYSHIGHHLKNIEHPERMTLFRMVFLDF--RFL 503

Query: 458 KAKLGINFPLIMHGSNLLYEVGDDLDEV-EVANY 490
           + K       I H S      G  L+ + ++  Y
Sbjct: 504 EQK-------IRHDSTAWNASGSILNTLQQLKFY 530

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	563
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	100.0
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	100.0
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	100.0
2nvu_B	805	Maltose binding protein/NEDD8-activating enzyme E1	100.0
1z7l_A	276	Ubiquitin-activating enzyme E1 1; SCCH, second cat	100.0
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	100.0
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	100.0
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	100.0
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	100.0
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	100.0
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	99.97
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	99.97
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	99.97
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	99.97
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	99.97
1y8x_B	98	Ubiquitin-activating enzyme E1C; ubiquitin-conjuga	98.69
1z7l_A	276	Ubiquitin-activating enzyme E1 1; SCCH, second cat	98.53
3onh_A	127	Ubiquitin-activating enzyme E1-like; ligase, SUMO	98.43
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.66
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.56
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.28
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.08
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	97.04
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.0
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.99
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	96.9
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	96.78
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.76
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.74
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	96.72
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	96.54
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	96.51
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.47
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.46
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	96.36
3c85_A	183	Putative glutathione-regulated potassium-efflux S	96.36
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	96.32
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.29
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	96.28
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.28
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	96.27
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	96.26
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	96.24
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	96.09
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	96.04
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	96.03
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	96.02
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	95.9
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	95.87
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	95.86
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	95.77
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	95.76
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	95.68
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	95.64
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	95.62
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	95.6
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	95.59
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	95.56
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	95.55
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	95.47
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	95.44
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	95.43
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	95.3
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	95.3
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	95.25
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	95.23
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	95.23
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	95.23
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	95.16
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	95.12
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	95.12
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	95.1
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	95.05
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	95.05
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	95.04
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	95.04
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	95.03
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	95.02
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	94.98
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	94.95
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	94.93
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	94.93
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	94.92
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	94.82
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	94.77
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	94.76
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	94.73
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	94.73
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	94.72
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	94.7
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	94.66
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	94.64
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	94.63
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	94.61
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	94.55
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	94.53
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	94.48
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	94.41
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	94.41
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	94.37
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	94.36
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	94.34
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	94.34
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	94.32
4g65_A	461	TRK system potassium uptake protein TRKA; structur	94.29
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	94.21
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	94.17
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	94.17
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	94.16
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	94.16
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	94.15
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	94.13
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	94.12
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	94.06
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	94.06
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	94.04
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	94.04
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	94.03
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	94.03
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	94.01
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	93.98
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	93.97
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	93.94
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	93.9
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	93.86
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	93.85
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	93.84
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	93.83
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	93.83
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	93.8
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	93.76
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	93.75
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	93.71
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	93.69
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	93.6
4ezb_A	317	Uncharacterized conserved protein; structural geno	93.57
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	93.52
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	93.5
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	93.48
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	93.45
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	93.44
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	93.42
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	93.38
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	93.34
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	93.3
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	93.29
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	93.28
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	93.25
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	93.24
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	93.24
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	93.23
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	93.22
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	93.22
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	93.21
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	93.19
3tl2_A	315	Malate dehydrogenase; center for structural genomi	93.18
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	93.16
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	93.15
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	93.15
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	93.12
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	93.12
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	93.11
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	93.06
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	93.06
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	93.06
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	93.01
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	93.0
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	93.0
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	93.0
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	92.99
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	92.97
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	92.96
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	92.96
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	92.95
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	92.95
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	92.94
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	92.91
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	92.9
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	92.89
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	92.83
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	92.83
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	92.8
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	92.78
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	92.78
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	92.76
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	92.76
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	92.75
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	92.75
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	92.72
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	92.71
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	92.7
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	92.57
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	92.56
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	92.55
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	92.55
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	92.54
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	92.52
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	92.52
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	92.51
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	92.5
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	92.49
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	92.48
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	92.48
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	92.48
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	92.47
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	92.47
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	92.44
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	92.41
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	92.4
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	92.37
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	92.35
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	92.35
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	92.35
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	92.35
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	92.32
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	92.32
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	92.3
1xq6_A	253	Unknown protein; structural genomics, protein stru	92.29
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	92.29
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	92.28
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	92.28
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	92.28
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	92.27
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	92.27
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	92.24
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	92.21
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	92.21
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	92.19
3imf_A	257	Short chain dehydrogenase; structural genomics, in	92.19
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	92.18
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	92.17
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	92.16
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	92.16
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	92.14
3rih_A	293	Short chain dehydrogenase or reductase; structural	92.11
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	92.1
4f6c_A	427	AUSA reductase domain protein; thioester reductase	92.1
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	92.1
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	92.09
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	92.08
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	92.06
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	92.03
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	91.97
1spx_A	278	Short-chain reductase family member (5L265); paral	91.92
1xq1_A	266	Putative tropinone reducatse; structural genomics,	91.91
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	91.9
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	91.86
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	91.83
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	91.83
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	91.8
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	91.77
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	91.76
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	91.75
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	91.72
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	91.72
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	91.71
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	91.69
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	91.63
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	91.62
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	91.62
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	91.59
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	91.54
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	91.53
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	91.52
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	91.52
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	91.51
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	91.5
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	91.45
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	91.45
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	91.44
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	91.43
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	91.4
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	91.38
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	91.36
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	91.34
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	91.33
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	91.33
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	91.32
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	91.29
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	91.26
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	91.19
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	91.17
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	91.17
4dqx_A	277	Probable oxidoreductase protein; structural genomi	91.16
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	91.15
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	91.07
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	91.06
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	91.06
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	91.05
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	91.05
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	91.05
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	91.04
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	91.03
3qha_A	296	Putative oxidoreductase; seattle structural genomi	91.0
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	90.99
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	90.96
1lnq_A	336	MTHK channels, potassium channel related protein;	90.96
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	90.9
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	90.9
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	90.9
3cxt_A	291	Dehydrogenase with different specificities; rossma	90.89
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	90.89
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	90.87
1xkq_A	280	Short-chain reductase family member (5D234); parra	90.86
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	90.85
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	90.85
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	90.85
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	90.83
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	90.83
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	90.81
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	90.79
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	90.75
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	90.75
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	90.75
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	90.73
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	90.72
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	90.67
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	90.61
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	90.55
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	90.52
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	90.51
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	90.49
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	90.49
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	90.41
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	90.38
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	90.37
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	90.36
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	90.29
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	90.25
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	90.24
4g65_A	461	TRK system potassium uptake protein TRKA; structur	90.22
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	90.21
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	90.21
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	90.15
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	90.14
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	90.13
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	90.12
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	90.12
1xhl_A	297	Short-chain dehydrogenase/reductase family member	90.07
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	90.06
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	90.01
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	89.94
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	89.92
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	89.92
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	89.9
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	89.82
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	89.81
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	89.81
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	89.79
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	89.75
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	89.74
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	89.7
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	89.66
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	89.66
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	89.66
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	89.64
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	89.63
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	89.6
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	89.55
4hb9_A	412	Similarities with probable monooxygenase; flavin,	89.53
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	89.53
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	89.51
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	89.48
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	89.48
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	89.45
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	89.42
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	89.42
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	89.4
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	89.38
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	89.36
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	89.29
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	89.25
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	89.24
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	89.2
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	89.19
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	89.19
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	89.14
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	89.12
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	89.09
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	89.08
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	89.07
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	89.01
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	88.94
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	88.9
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	88.89
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	88.73
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	88.67
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	88.62
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	88.6
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	88.58
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	88.57
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	88.51
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	88.51
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	88.47
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	88.4
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	88.39
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	88.37
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	88.32
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	88.28
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	88.28
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	88.25
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	88.16
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	88.12
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	88.12
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	88.06
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	88.01
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	87.95
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	87.94
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	87.9
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	87.87
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	87.77
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	87.74
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	87.74
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	87.72
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	87.7
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	87.65
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	87.61
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	87.38
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	87.37
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	87.35
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	87.33
2cul_A	232	Glucose-inhibited division protein A-related PROT	87.32
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	87.31
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	87.31
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	87.31
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	87.26
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	87.26
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	87.25
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	87.16
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	87.13
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	87.11
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	87.08
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	87.07
1gq2_A	555	Malic enzyme; oxidoreductase, pigeon liver, NADP-d	86.97
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	86.91
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	86.87
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	86.82
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	86.8
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	86.79
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	86.73
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	86.68
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	86.65
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	86.58
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	86.53
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	86.52
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	86.51
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	86.36
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	86.31
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	86.23
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	86.15
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	86.14
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	86.13
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	86.12
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	86.07
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	86.05
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	86.0
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	85.97
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	85.88
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	85.86
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	85.8
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	85.71
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	85.66
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	85.62
1o0s_A	605	NAD-ME, NAD-dependent malic enzyme; oxidoreductase	85.57
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	85.54
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	85.54
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	85.46
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	85.4
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	85.38
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	85.25
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	85.2
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	85.18
4dpk_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	85.17
4dpl_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	85.17
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	85.15
3hsk_A	381	Aspartate-semialdehyde dehydrogenase; candida albi	85.1
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	85.06
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	85.05
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	85.0
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	84.92
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	84.91
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	84.91
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	84.88
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	84.85
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	84.81
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	84.69
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	84.68
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	84.65
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	84.55
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	84.54
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	84.52
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	84.42
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	84.38
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	84.37
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	84.34
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	84.28
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	84.25
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	84.13
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	84.09
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	84.06

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A

Probab=100.00  E-value=1.2e-109  Score=923.00  Aligned_cols=504  Identities=39%  Similarity=0.678  Sum_probs=432.5

Q ss_pred             CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (563)
Q Consensus         2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~   81 (563)
                      +|+++|++|+++||+||||||+||+++++|+++|||+|+|+|+|+|+.|||+|||||+.+|||++||++++++++++||+
T Consensus         7 ~G~e~Q~kL~~s~VlVVGaGGLGsevak~La~aGVG~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaaa~~L~~iNP~   86 (640)
T 1y8q_B            7 LPRELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPK   86 (640)
T ss_dssp             CCHHHHHHHHHCEEEEECCSHHHHHHHHHHHHHTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHTTCTT
T ss_pred             cCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHcCCCeEEEecCCEEChhhcCCCcCCChhHcChHHHHHHHHHHHHHCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCCCccccccCCCC
Q 008516           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPA  161 (563)
Q Consensus        82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~Cy~C~~~~~  161 (563)
                      ++|+++..++++..++.++++++|+||+|+||.++|.++|++|+.+++|+|++|+.|+.|++++++|+.++||+|.+.|+
T Consensus        87 v~V~a~~~~i~~~~~~~~~~~~~DlVvda~Dn~~aR~~ln~~c~~~~iPlI~~g~~G~~G~v~vi~p~~t~Cy~C~~~p~  166 (640)
T 1y8q_B           87 ANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMCLAADVPLIESGTAGYLGQVTTIKKGVTECYECHPKPT  166 (640)
T ss_dssp             CEEEEEESCTTSTTSCHHHHTTCSEEEECCSCHHHHHHHHHHHHHHTCCEEEEEEETTEEEEEEECTTTSCCTTSSCCCC
T ss_pred             CeEEEEecccchhhhhHhhhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecccceEEEECCCCCCCcccCCCCC
Confidence            99999999998776778999999999999999999999999999999999999999999999999999999999999898


Q ss_pred             CCCCCceeeccCCCCchhHHHHHHHHHHHHHhCCCCcccccccCCccc-----c-----------chhhhhhhhhcCCch
Q 008516          162 PKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDA-----S-----------SSAHAEDVFVRRKDE  225 (563)
Q Consensus       162 ~~~~p~cti~~~p~~~~hci~~a~~~lf~~lf~~~~~~~~~~~~~~~~-----~-----------~~~~~~~~~~~~~~~  225 (563)
                      ++++|+||++++|+.++|||+||++ +|+.+|++....+++.....+.     .           .++.+... ..+.|.
T Consensus       167 ~~~~p~Cti~~~p~~~~hci~~a~~-~f~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  244 (640)
T 1y8q_B          167 QRTFPGATIRNTPSEPIHCIVWAKY-LFNQLFGEEDADQEVSPDRADPEAAWEPTEAEARARASNEDGDIKRI-STKEWA  244 (640)
T ss_dssp             CCCCCTTTTTSCCCSHHHHHHHHHH-HHHHHHSCCCGGGCCSCCTTCTTSCCC----------------------CHHHH
T ss_pred             CcccceeeecCCCCchHHHHHHHHH-HHHHHhCCcchhhhhcccccchhhhhhhhhhhhhhhhhhhhhHHHHH-hhhhHH
Confidence            9999999999999999999999998 8999999765433332111000     0           00111111 122466


Q ss_pred             hHHHHHH-HHhhhhhhccHHHHhcCCcccCCCCCCCccccCCCCCcchhhhcccccccccccchhhhHHhhcCCCCCCCc
Q 008516          226 DIDQYGR-RIYDHVFGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDT  304 (563)
Q Consensus       226 ~~~~~a~-~~f~~~F~~~I~~ll~~~~~W~~~~~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (563)
                      +|+.||+ .+|+++|+++|++||++++||++||+|+||.|+...+.+....           ..+......+++++ +++
T Consensus       245 ~~~~~a~~~~f~k~F~~~I~~Ll~~~~fW~~kr~P~pl~fd~~~~~~~~~~-----------~~~~~~~~~~~~~d-~~~  312 (640)
T 1y8q_B          245 KSTGYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAEVQSQGEETN-----------ASDQQNEPQLGLKD-QQV  312 (640)
T ss_dssp             HHTTSCHHHHHHHHHTHHHHHHTTCGGGCSSSCCCCCCCHHHHHHC-------------------------CCCGG-GSC
T ss_pred             HhHhHHHHHHHHHHHhhHHHHHHhCcccccCCCCCCCcccCcccccccccc-----------ccccccccccCCCh-hhh
Confidence            7777776 4999999999999999999999999999999984332211100           00111122345544 779


Q ss_pred             cccccchHHHHHHHHHHHHhhhh--ccCCcccCCCcHhHHHHHHHHHHHHHHHcCCCCCCHHHHHhhhcccccchhhHHH
Q 008516          305 WTLLESSRIFLEALKLFFAKREK--EIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNA  382 (563)
Q Consensus       305 ~s~~e~~~~f~~~~~~l~~~~~~--~~~~l~FdKDDd~h~dFV~AasNLRA~~f~I~~~s~~~~K~iAGnIIPAIATTnA  382 (563)
                      |+++++.++|.++++++.++...  .+.|++||||||+|||||+|||||||+||+||++|+|++|+||||||||||||||
T Consensus       313 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~FdKDDd~h~dFV~aaaNlRA~~y~I~~~~~~~~K~iAG~IIPAIATTnA  392 (640)
T 1y8q_B          313 LDVKSYARLFSKSIETLRVHLAEKGDGAELIWDKDDPSAMDFVTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNA  392 (640)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHTCTTCCCCCCTTCHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHTCCCCCHHHHH
T ss_pred             cChhhhhhhHHHHHHHHHHHhhhcccCCCcccCCCCHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCCcccchhhHHH
Confidence            99999999999999998876432  4789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCccccceeeeccc-ccccccccccCCCCCCCCcccCC-CccEEEEEcCCCCCHHHHHHHHHHHh
Q 008516          383 IIAGLIVIEAIKVLLKDTDKYRMTYCLEH-ITKKMLLMPVEPYEPNKSCYVCS-ETPLSLEINTSRSKLRDFVEKIVKAK  460 (563)
Q Consensus       383 iVAGl~vlE~~K~l~~~~~~~r~~f~~~~-~~~~~~~~p~~~~~pn~~C~vC~-~~~~~l~i~~~~~TL~~li~~~lk~~  460 (563)
                      |||||+|+|+||+++++.+.|||+|+|++ +.+++++.+..|.+|||+|++|+ .++++++++.+++||++|++++++++
T Consensus       393 iVaGl~~lE~~Kvl~~~~~~~kn~f~n~a~~~~~~~~~~~~p~~p~~~c~vc~~~~~~~~~~~~~~~TL~~li~~~~~~~  472 (640)
T 1y8q_B          393 VIAGLIVLEGLKILSGKIDQCRTIFLNKQPNPRKKLLVPCALDPPNPNCYVCASKPEVTVRLNVHKVTVLTLQDKIVKEK  472 (640)
T ss_dssp             HHHHHHHHHHHHHHTTCGGGCEEEEECSSCCTTSEEEEEEECCCCCTTCTTTSSSCEEEEEECTTTCBHHHHHHCCCCCC
T ss_pred             HHHHHHHHHHHHHHhccHHhhhhhheeeccCCCCcEEeecccCCCCCCCcccCCccEEEEEEeCCCCcHHHHHHHHHHHh
Confidence            99999999999999999999999999998 55678899999999999999994 66789999988999999999977999


Q ss_pred             cCCCcCeEEe---cCeEEEeeCCCchHHHHHHhhhhhhcchhhhcCcccCCCcceeeccCCCccceeeEEe
Q 008516          461 LGINFPLIMH---GSNLLYEVGDDLDEVEVANYAANLEKVKIQASSVTLCSSPPDFCCSCNDADVLLFCFF  528 (563)
Q Consensus       461 ~~l~~~~i~~---g~~~LY~~~~~~~~~~~~~~~~nl~k~L~el~~gv~~g~~~~~~~~~~~~d~~~~~~~  528 (563)
                      |||++|||++   |+++||..+++       .+++||+|+|++|  |+++|+++.+.+.-.++++-+.+..
T Consensus       473 ~~l~~~~is~~~~~~~~ly~~~~~-------~~~~~l~~~l~el--~v~~~~~~~v~d~~~~~~~~i~~~~  534 (640)
T 1y8q_B          473 FAMVAPDVQIEDGKGTILISSEEG-------ETEANNHKKLSEF--GIRNGSRLQADDFLQDYTLLINILH  534 (640)
T ss_dssp             TCCSSCEEEESSSSCCEEECSSSS-------SSTTGGGSBGGGG--TCCTTCEEEEEETTTTEEEEEEEEE
T ss_pred             hCCCCceEEEEcCCCcEEEeccch-------hhHHhhhCcHHHh--CccCCcEEEecCCCccEEEEEEEEe
Confidence            9999999999   88999987754       3578999999999  8999999999886666666555543

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-100  Score=889.30  Aligned_cols=515  Identities=27%  Similarity=0.398  Sum_probs=402.5

Q ss_pred             CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCC-----CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHH
Q 008516            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGF-----QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVL   76 (563)
Q Consensus         2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gv-----g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~   76 (563)
                      +|.++|++|+++||+||||||+|||++|+|+++||     |+|+|+|+|+|+.|||||||||+.+|||++||++|+++++
T Consensus       415 ~G~~~q~kL~~~~VlvVGaGGlGsevlk~La~~Gv~~g~~G~i~lvD~D~Ve~SNLnRQ~lf~~~dvG~~Ka~~aa~~l~  494 (1015)
T 3cmm_A          415 FGLDFQKKIANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDSIEKSNLNRQFLFRPKDVGKNKSEVAAEAVC  494 (1015)
T ss_dssp             HCHHHHHHHHTCEEEEECCSHHHHHHHHHHHHHTTTCSTTCEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHH
T ss_pred             cCHHHHHHHhcCeEEEEecCHHHHHHHHHHHHcCcCcCCCCeEEEEeCCEeccccccccccCChhhCCCHHHHHHHHHHH
Confidence            47899999999999999999999999999999999     9999999999999999999999999999999999999999


Q ss_pred             hhCCCc--eEEEeccCCCCC---cchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCCC
Q 008516           77 KFRPQM--SITAHHANVKDP---KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKT  151 (563)
Q Consensus        77 ~~np~v--~I~~~~~~i~~~---~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t  151 (563)
                      ++||++  +|+++..+++..   .++.+|++++|+||+|+||.++|.++|++|+.+++|+|++|+.|+.|++++++|+.+
T Consensus       495 ~iNP~v~~~v~~~~~~i~~~~~~~~~~~~~~~~D~Vi~a~Dn~~aR~~ln~~c~~~~~Pli~~g~~G~~G~v~v~~p~~t  574 (1015)
T 3cmm_A          495 AMNPDLKGKINAKIDKVGPETEEIFNDSFWESLDFVTNALDNVDARTYVDRRCVFYRKPLLESGTLGTKGNTQVIIPRLT  574 (1015)
T ss_dssp             HHCGGGTTTEEEECCCCSGGGTTTSCHHHHHHCSEEEECCSSHHHHHHHHHHHHHHTCCEEEEEEETTEEEEEEECTTTB
T ss_pred             HHCCCCcceEEEEecccCchhhhhccHhhhccCCEEEECCCCHHHHHHHHHHHHHcCCcEEEeCCCccccceEEEeCCCC
Confidence            999999  999999998642   356789999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCCCCCceeeccCCCCchhHHHHHHHHHHHHHhCCCCccc-cc-c-cC--------Cc-cccchhhhhhhh
Q 008516          152 ECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQEN-DL-N-VR--------SS-DASSSAHAEDVF  219 (563)
Q Consensus       152 ~Cy~C~~~~~~~~~p~cti~~~p~~~~hci~~a~~~lf~~lf~~~~~~~-~~-~-~~--------~~-~~~~~~~~~~~~  219 (563)
                      +||+|.++|+++++|+||++++|+.++|||+||++ +|+.+|++..++. .+ . +.        .. ....++.+.+.+
T Consensus       575 ~cy~c~~dp~~~~~P~Ctl~~~P~~~~h~i~wa~~-~f~~lf~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l  653 (1015)
T 3cmm_A          575 ESYSSSRDPPEKSIPLCTLRSFPNKIDHTIAWAKS-LFQGYFTDSAENVNMYLTQPNFVEQTLKQSGDVKGVLESISDSL  653 (1015)
T ss_dssp             CCGGGSCCCCCCCCCHHHHHTCCCSHHHHHHHHHH-HHHHHHTHHHHHHHHHHHCTTHHHHHHC---CCHHHHHHHHHHH
T ss_pred             CccCCCCCCCCCCCCcccccCCCCCcHHHHHHHHH-HHHHHHhhhhhhhhhhccCchhHHHHHhccchhHHHHHHHHHHh
Confidence            99999998889999999999999999999999999 8999999643321 11 1 10        00 001122333333


Q ss_pred             --hcCCchhHHHHHHHHhhhhhhccHHHHhcC----------CcccCC-CCCCCccccCCCCCcc--hhhhcccccccc-
Q 008516          220 --VRRKDEDIDQYGRRIYDHVFGYNIEVASSN----------EETWKN-RNRPKPIYSADVMPEN--LTEQNGNVAKNC-  283 (563)
Q Consensus       220 --~~~~~~~~~~~a~~~f~~~F~~~I~~ll~~----------~~~W~~-~~~P~pl~~~~~~~~~--~~~~~~~~~~~~-  283 (563)
                        .+.++++|++||+.+|+++|+++|++||++          ++||++ ||+|+||.||...+.+  +....+++.+.. 
T Consensus       654 ~~~~~~~~~c~~~a~~~f~~~F~~~I~~Ll~~~p~d~~~~~g~~fW~~~kr~P~pl~fd~~~~~h~~fi~~~a~l~a~~~  733 (1015)
T 3cmm_A          654 SSKPHNFEDCIKWARLEFEKKFNHDIKQLLFNFPKDAKTSNGEPFWSGAKRAPTPLEFDIYNNDHFHFVVAGASLRAYNY  733 (1015)
T ss_dssp             HSCCSSHHHHHHHHHHHHHHHHTHHHHHHHHHSCTTCBCSTTCBSSCTTCCCCCCCCCCTTSHHHHHHHHHHHHHHHHHH
T ss_pred             hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccCcccccCCCCCCCCcccCCCCHHHHHHHHHHHHhHHHhc
Confidence              245789999999999999999999999987          899996 9999999999655433  222222221110 


Q ss_pred             --cc-----cchhhhHHhhc---CC-----CCCCCcccccc-----chHH-HHHHHHHHHHhhh-------hccCCcccC
Q 008516          284 --VV-----DTSSVSAMASL---GL-----KNPQDTWTLLE-----SSRI-FLEALKLFFAKRE-------KEIGNLSFD  335 (563)
Q Consensus       284 --~~-----~~~~~~~~~~~---~~-----~~~~~~~s~~e-----~~~~-f~~~~~~l~~~~~-------~~~~~l~Fd  335 (563)
                        ..     ..+.....+.+   .+     +..-+++..+.     .... +.++++++..+..       ..+.|++||
T Consensus       734 ~i~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~ki~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Fe  813 (1015)
T 3cmm_A          734 GIKSDDSNSKPNVDEYKSVIDHMIIPEFTPNANLKIQVNDDDPDPNANAANGSDEIDQLVSSLPDPSTLAGFKLEPVDFE  813 (1015)
T ss_dssp             TCCCSSTTSSCCHHHHHHHHTTCCCCCCCCCSSCCCCSSTTSSCC---------CCHHHHTTSCCGGGGTTCCCCCCCCC
T ss_pred             CCCCccccccCCHHHHHHHHhhCcCCCcCCccCceeccchhhhcccccccccHHHHHHHHHHhccchhcccCCCCceeee
Confidence              00     00000000000   00     00001110000     0111 4445566654422       136799999


Q ss_pred             CCcHh--HHHHHHHHHHHHHHHcCCCCCCHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHhc--Cccccceeeeccc
Q 008516          336 KDDQL--AVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLK--DTDKYRMTYCLEH  411 (563)
Q Consensus       336 KDDd~--h~dFV~AasNLRA~~f~I~~~s~~~~K~iAGnIIPAIATTnAiVAGl~vlE~~K~l~~--~~~~~r~~f~~~~  411 (563)
                      ||||+  |||||+|||||||+||+||++|||++|+|||||||||||||||||||+|+|+||+++|  +.+.|||+|+|++
T Consensus       814 KDDd~n~h~dFi~aasNlRa~ny~I~~~~~~~~k~iaG~IIPAIaTT~AivaGl~~lE~~K~~~~~~~~~~~kn~f~nla  893 (1015)
T 3cmm_A          814 KDDDTNHHIEFITACSNCRAQNYFIETADRQKTKFIAGRIIPAIATTTSLVTGLVNLELYKLIDNKTDIEQYKNGFVNLA  893 (1015)
T ss_dssp             TTCTTSSHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCEEEEETT
T ss_pred             cCCCchhHHHHHHHHHHHHHHHcCCCccCHHHHHHHhCCcCccchhHHHHHHHHHHHHHHHHHhcccchhhhhhHHHhcc
Confidence            99999  9999999999999999999999999999999999999999999999999999999998  5799999999998


Q ss_pred             ccccccccccCC-CCCCCCcccCCC--ccEEEEEcCCCCCHHHHHHHHHHHhcCCCcCeEEecCeEEEeeCCCchHHHHH
Q 008516          412 ITKKMLLMPVEP-YEPNKSCYVCSE--TPLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVA  488 (563)
Q Consensus       412 ~~~~~~~~p~~~-~~pn~~C~vC~~--~~~~l~i~~~~~TL~~li~~~lk~~~~l~~~~i~~g~~~LY~~~~~~~~~~~~  488 (563)
                      ++.   +.+.+| .+|+++|+.|++  .+.+++++. ++||++|+++ ++++||++++||+.|+++||+++++..     
T Consensus       894 ~~~---~~~~~p~~~~~~~~~~~~~~t~wd~~~v~~-~~Tl~~li~~-~~~~~~~~~~~i~~~~~~ly~~~~~~~-----  963 (1015)
T 3cmm_A          894 LPF---FGFSEPIASPKGEYNNKKYDKIWDRFDIKG-DIKLSDLIEH-FEKDEGLEITMLSYGVSLLYASFFPPK-----  963 (1015)
T ss_dssp             TTE---EEEECCCBCCEEEETTEEEETTTCEEEEES-CCBHHHHHHH-HHHTTCCEEEEEEETTEEEEETTCCHH-----
T ss_pred             CCc---eeecCCCCCCCCCCCCCCCCeEEEEEEECC-CCcHHHHHHH-HHHHhCCcceeeccCCcEEEecCCCch-----
Confidence            553   333333 356677776653  233566664 8999999999 589999999999999999999987522     


Q ss_pred             HhhhhhhcchhhhcCcccCCCc--------ceeeccC---CCccceeeEE
Q 008516          489 NYAANLEKVKIQASSVTLCSSP--------PDFCCSC---NDADVLLFCF  527 (563)
Q Consensus       489 ~~~~nl~k~L~el~~gv~~g~~--------~~~~~~~---~~~d~~~~~~  527 (563)
                      ..++||+|+|++|...+....+        ++++|..   +|+|+|+...
T Consensus       964 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~d~~~p~v~~ 1013 (1015)
T 3cmm_A          964 KLKERLNLPITQLVKLVTKKDIPAHVSTMILEICADDKEGEDVEVPFITI 1013 (1015)
T ss_dssp             HHHHHTTSBHHHHHHHHSSSCCCSSCCEEEEEEEEECTTSCEECCCEEEE
T ss_pred             hhHHhccCCHHHHHHhhccCcCCCCceEEEEEEEecCCCCCcCCCCcEEE
Confidence            3578999999999754444433        4566654   4677887653

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=100.00  E-value=3.1e-68  Score=572.25  Aligned_cols=375  Identities=31%  Similarity=0.516  Sum_probs=306.3

Q ss_pred             HHHH-HHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCc
Q 008516            4 ERQL-EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQM   82 (563)
Q Consensus         4 ~~~q-~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v   82 (563)
                      .+.+ .+|+++||+|||+||+||+++++|+++|||+|+|+|+|+|+.|||+|||||+.+|||++||++++++++++||++
T Consensus        31 ~e~~~~~L~~~~VlvvG~GGlGs~va~~La~aGvg~i~ivD~D~Ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~lnp~v  110 (434)
T 1tt5_B           31 TESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNC  110 (434)
T ss_dssp             SSHHHHHHHTCCEEEECSSTHHHHHHHHHHHTTCCCEEEEECCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHhcCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEcCCEechhccCCCcCCChhHcCcHHHHHHHHHHHhhCCCC
Confidence            3444 456999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhc------------CCCEEEeccccceeeEEEEeCCC
Q 008516           83 SITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA------------DVPLVESGTTGFLGQVTVHVKGK  150 (563)
Q Consensus        83 ~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~------------~~pli~~gt~G~~G~v~v~~~~~  150 (563)
                      +|+++..++++.  +.++++++|+||+|+||.++|.++|+.|+..            ++|+|++|+.|+.|++.++.|+.
T Consensus       111 ~v~~~~~~i~~~--~~~~~~~~DlVi~~~Dn~~~R~~in~~c~~~~~~~~g~~~~~~~iPli~~~~~g~~G~v~v~~p~~  188 (434)
T 1tt5_B          111 NVVPHFNKIQDF--NDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGM  188 (434)
T ss_dssp             CCEEEESCGGGB--CHHHHTTCSEEEECCSCHHHHHHHHHHHHHTCCBSSSCBCGGGCCCEEEEEEETTEEEEEEECTTT
T ss_pred             EEEEEecccchh--hHHHhcCCCEEEECCCCHHHHHHHHHHHHHhhhccccccccccCCcEEEeccccceeEEEEECCCC
Confidence            999999988653  4689999999999999999999999999884            99999999999999999999999


Q ss_pred             CccccccCC--CCCCCCCceeeccCCCCchhHHHHHHHHHHHHHhCCCCcccccccCCccccchhhhhhhhhcCCchhHH
Q 008516          151 TECYECQPK--PAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDID  228 (563)
Q Consensus       151 t~Cy~C~~~--~~~~~~p~cti~~~p~~~~hci~~a~~~lf~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (563)
                      ++||+|..+  |++.++|.||++++|+.++|||+||+.++|+..+                                   
T Consensus       189 t~Cy~C~~~~~p~~~~~p~Ct~~~~p~~~~h~i~~a~~i~~~~~~-----------------------------------  233 (434)
T 1tt5_B          189 TACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQ-----------------------------------  233 (434)
T ss_dssp             SCCGGGGGGGSCCCCCCCHHHHHHCCCSHHHHHHHHHHTHHHHSC-----------------------------------
T ss_pred             CCCcccccCCCCCcCCCcccccccCCcchhHHHHHHHHHHHhhhc-----------------------------------
Confidence            999999854  5678999999999999999999999985443210                                   


Q ss_pred             HHHHHHhhhhhhccHHHHhcCCcccCCCCCCCccccCCCCCcchhhhcccccccccccchhhhHHhhcCCCCCCCccccc
Q 008516          229 QYGRRIYDHVFGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLL  308 (563)
Q Consensus       229 ~~a~~~f~~~F~~~I~~ll~~~~~W~~~~~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  308 (563)
                                                    |.                                                
T Consensus       234 ------------------------------~~------------------------------------------------  235 (434)
T 1tt5_B          234 ------------------------------PF------------------------------------------------  235 (434)
T ss_dssp             ------------------------------TT------------------------------------------------
T ss_pred             ------------------------------cc------------------------------------------------
Confidence                                          00                                                


Q ss_pred             cchHHHHHHHHHHHHhhhhccCCcccCCCcHhHHHHHHHHHHHHHHHcCCCCCCHHHHHhhhcccccchhhHHHHHHHHH
Q 008516          309 ESSRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLI  388 (563)
Q Consensus       309 e~~~~f~~~~~~l~~~~~~~~~~l~FdKDDd~h~dFV~AasNLRA~~f~I~~~s~~~~K~iAGnIIPAIATTnAiVAGl~  388 (563)
                                          .+++.||+||++|++||+++||+||..|||+..+++.+++++|+||||||||||||||++
T Consensus       236 --------------------~~~~~~d~d~~~~~~~v~~~a~~~~~~~gi~~~~~~~~~gv~~~iipaia~t~aiig~l~  295 (434)
T 1tt5_B          236 --------------------GEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVC  295 (434)
T ss_dssp             --------------------CTTCCCCTTCHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHTTCCCCCHHHHHHHHHHH
T ss_pred             --------------------ccccccCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHhHhhccCcccccHHHHHHHHH
Confidence                                012369999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCccccceeeecccccccccccccCCCCCCCCcccCCCccEEEEEcCCCCCHHHHHHHHHHH-hcCCCcCe
Q 008516          389 VIEAIKVLLKDTDKYRMTYCLEHITKKMLLMPVEPYEPNKSCYVCSETPLSLEINTSRSKLRDFVEKIVKA-KLGINFPL  467 (563)
Q Consensus       389 vlE~~K~l~~~~~~~r~~f~~~~~~~~~~~~p~~~~~pn~~C~vC~~~~~~l~i~~~~~TL~~li~~~lk~-~~~l~~~~  467 (563)
                      ++|++|+|.|..+...+.++.-... ..+. .....+++|+|++|+..+..++++. ++||++|++.+.++ +++++.|+
T Consensus       296 a~EaiK~l~g~~~~l~~~l~~d~~~-~~~~-~~~~~~~~~~C~vC~~~~~~~~~~~-~~tl~~~~~~l~~~~~~~~~~~~  372 (434)
T 1tt5_B          296 ATEVFKIATSAYIPLNNYLVFNDVD-GLYT-YTFEAERKENCPACSQLPQNIQFSP-SAKLQEVLDYLTNSASLQMKSPA  372 (434)
T ss_dssp             HHHHHHHHHTCSCCCCSEEEEECSB-SCEE-EEECCCCCTTCTTTCSSCBCCCC------CTTHHHHHHHCSSCCCSSCC
T ss_pred             HHHHHHHHhCCCcccCceEEEEcCC-Ccee-EEEeccCCCCCCccCCCCceEEECC-CccHHHHHHHHhccCccceEccE
Confidence            9999999998754333322211111 1111 1123458999999997666666664 57999999996443 57899999


Q ss_pred             EEe----cCeEEEeeCCCchHHHHHHhhhhhhcchhhhcCcccCCCcceeeccCCCcc
Q 008516          468 IMH----GSNLLYEVGDDLDEVEVANYAANLEKVKIQASSVTLCSSPPDFCCSCNDAD  521 (563)
Q Consensus       468 i~~----g~~~LY~~~~~~~~~~~~~~~~nl~k~L~el~~gv~~g~~~~~~~~~~~~d  521 (563)
                      |+.    |+++||+.+.+   +.++.+++||+|+|+||  |+.+|+++.+++.....+
T Consensus       373 is~~~~~~~~~ly~~~~~---~~~~~~~~~l~~~l~~l--~~~~g~~~~v~d~~~~~~  425 (434)
T 1tt5_B          373 ITATLEGKNRTLYLQSVT---SIEERTRPNLSKTLKEL--GLVDGQELAVADVTTPQT  425 (434)
T ss_dssp             CEET----TEECCCCCCT---TTTTTSCC-CCC-------CCCSSCCEECCCTTCSSC
T ss_pred             EEEEccCCCcEEEecCCc---chhhhhHhhhcCCHHHc--CCCCCCEEEEECCCCccc
Confidence            988    58999987642   22235789999999999  899999999887554444

>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1

Probab=100.00  E-value=1.5e-63  Score=576.07  Aligned_cols=378  Identities=32%  Similarity=0.520  Sum_probs=325.2

Q ss_pred             CCHHHHHHH-cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC
Q 008516            2 VSERQLEAI-KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP   80 (563)
Q Consensus         2 ~~~~~q~kL-~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np   80 (563)
                      ++++.|+++ +++||+|||+||+||+++++|+++|||+|+|+|+|+|+.|||+|||||+.+|||++||++++++++++||
T Consensus       400 ~g~~~~~~~l~~~~vlvvG~GglG~~~~~~L~~~Gvg~i~l~D~d~v~~snl~rq~~~~~~~vg~~Ka~~~~~~l~~~np  479 (805)
T 2nvu_B          400 PSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVP  479 (805)
T ss_dssp             CCSHHHHHHHHTCCEEEECCSSHHHHHHHHHHTTTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHST
T ss_pred             CCHHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCcEEEECCCeecccccccccccchhhcCChHHHHHHHHHHHHCC
Confidence            577888887 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhc------------CCCEEEeccccceeeEEEEeC
Q 008516           81 QMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA------------DVPLVESGTTGFLGQVTVHVK  148 (563)
Q Consensus        81 ~v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~------------~~pli~~gt~G~~G~v~v~~~  148 (563)
                      +++|+++..++++.  +.++++++|+||+|+||.++|+++|+.|+..            ++|+|++|+.|+.|++.+++|
T Consensus       480 ~~~v~~~~~~~~~~--~~~~~~~~d~vv~~~d~~~~r~~in~~~~~~~~~~~g~~~~~~~~p~i~~~~~g~~G~~~~~~p  557 (805)
T 2nvu_B          480 NCNVVPHFNKIQDF--NDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILP  557 (805)
T ss_dssp             TCEEEEEESCGGGS--CHHHHHTCSEEEECCSCHHHHHHHHHHHHHTCCEETTEECGGGCCCEEEEEEETTEEEEEEECT
T ss_pred             CCEEEEEecccccc--HHHHHhcCCEEEECCCCHHHHHHHHHHHHHHhhccccccccccCCcEEEeccccCceeEEEECC
Confidence            99999999998653  4689999999999999999999999999884            999999999999999999999


Q ss_pred             CCCccccccCC--CCCCCCCceeeccCCCCchhHHHHHHHHHHHHHhCCCCcccccccCCccccchhhhhhhhhcCCchh
Q 008516          149 GKTECYECQPK--PAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDED  226 (563)
Q Consensus       149 ~~t~Cy~C~~~--~~~~~~p~cti~~~p~~~~hci~~a~~~lf~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (563)
                      +.++||+|..+  |++..+|.|+++++|+.++|||.||+.++|+..+                                 
T Consensus       558 ~~~~c~~c~~~~~p~~~~~~~c~~~~~~~~~~~~i~~a~~~~~~~~~---------------------------------  604 (805)
T 2nvu_B          558 GMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQ---------------------------------  604 (805)
T ss_dssp             TTSCCTTTSGGGSCCCCCCCHHHHHHCCCSHHHHHHHHHHTHHHHHC---------------------------------
T ss_pred             CCCCceeccCCCCCCCCCCCccccCCCCCCccHHHHHHHHhhccccc---------------------------------
Confidence            99999999854  6678899999999999999999999985543211                                 


Q ss_pred             HHHHHHHHhhhhhhccHHHHhcCCcccCCCCCCCccccCCCCCcchhhhcccccccccccchhhhHHhhcCCCCCCCccc
Q 008516          227 IDQYGRRIYDHVFGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWT  306 (563)
Q Consensus       227 ~~~~a~~~f~~~F~~~I~~ll~~~~~W~~~~~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  306 (563)
                                                      |.                                              
T Consensus       605 --------------------------------~~----------------------------------------------  606 (805)
T 2nvu_B          605 --------------------------------PF----------------------------------------------  606 (805)
T ss_dssp             --------------------------------TT----------------------------------------------
T ss_pred             --------------------------------CC----------------------------------------------
Confidence                                            00                                              


Q ss_pred             cccchHHHHHHHHHHHHhhhhccCCcccCCCcHhHHHHHHHHHHHHHHHcCCCCCCHHHHHhhhcccccchhhHHHHHHH
Q 008516          307 LLESSRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAG  386 (563)
Q Consensus       307 ~~e~~~~f~~~~~~l~~~~~~~~~~l~FdKDDd~h~dFV~AasNLRA~~f~I~~~s~~~~K~iAGnIIPAIATTnAiVAG  386 (563)
                                            .+++.||+||++|++||++.+|+||..|||+..+++.+++++|+||||||||||||+|
T Consensus       607 ----------------------~~~~~~d~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~i~p~i~~~~aiig~  664 (805)
T 2nvu_B          607 ----------------------GEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAA  664 (805)
T ss_dssp             ----------------------STTCCCCTTCHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHTCCCCCHHHHHHHHH
T ss_pred             ----------------------CCcccCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHhcccccccchHHHHHHH
Confidence                                  0234799999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCccccceeeecccccccccccccCCCCCCCCcccCCCccEEEEEcCCCCCHHHHHHHHHHH-hcCCCc
Q 008516          387 LIVIEAIKVLLKDTDKYRMTYCLEHITKKMLLMPVEPYEPNKSCYVCSETPLSLEINTSRSKLRDFVEKIVKA-KLGINF  465 (563)
Q Consensus       387 l~vlE~~K~l~~~~~~~r~~f~~~~~~~~~~~~p~~~~~pn~~C~vC~~~~~~l~i~~~~~TL~~li~~~lk~-~~~l~~  465 (563)
                      ++++|++|+|.|..+..++.++.-... ..+ ......+++|+|++|+..+..++++. ++||++|++.+.++ +++++.
T Consensus       665 ~~a~e~ik~l~~~~~~l~~~~~~~~~~-~~~-~~~~~~~~~~~C~~C~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  741 (805)
T 2nvu_B          665 VCATEVFKIATSAYIPLNNYLVFNDVD-GLY-TYTFEAERKENCPACSQLPQNIQFSP-SAKLQEVLDYLTNSASLQMKS  741 (805)
T ss_dssp             HHHHHHHHHHHCSSCCCCSEEEEECSB-SCE-EEEECCCCCTTCTTTSCCCEEEEECT-TSBHHHHHHHHHHCTTTCCSS
T ss_pred             HHHHHHHHHHhccccccCceEEecCCC-Ccc-cccccCCCCCCCCeeCceeEEEEECC-cChHHHHHHHHHhhhccCccc
Confidence            999999999998765444422211111 111 11123457999999998778888885 58999999996544 678999


Q ss_pred             CeEEe----cCeEEEeeCCCchHHHHHHhhhhhhcchhhhcCcccCCCcceeeccCCCccc
Q 008516          466 PLIMH----GSNLLYEVGDDLDEVEVANYAANLEKVKIQASSVTLCSSPPDFCCSCNDADV  522 (563)
Q Consensus       466 ~~i~~----g~~~LY~~~~~~~~~~~~~~~~nl~k~L~el~~gv~~g~~~~~~~~~~~~d~  522 (563)
                      |+|+.    |+++||+.+.   ++.++.+++||+|+|+||  |+++|+++.+++.....++
T Consensus       742 ~~~~~~~~~~~~~ly~~~~---~~~~~~~~~~l~~~l~~l--~~~~~~~~~~~~~~~~~~~  797 (805)
T 2nvu_B          742 PAITATLEGKNRTLYLQSV---TSIEERTRPNLSKTLKEL--GLVDGQELAVADVTTPQTV  797 (805)
T ss_dssp             CEEEEEETTEEEEEECCSS---HHHHHHHGGGGGSBTTTT--TCCTTCEEEEECTTSSSCE
T ss_pred             ceEEEEccCCCcEEEecCc---cchhhhhHhhhcCCHHHc--CCCCCCEEEEEcCCCCeeE
Confidence            99988    5889998774   344556889999999999  9999999999876655443

>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine half-domain, ligase; HET: TBR; 2.80A {Mus musculus}

Probab=100.00  E-value=3e-44  Score=363.00  Aligned_cols=214  Identities=20%  Similarity=0.289  Sum_probs=137.6

Q ss_pred             CCCCCCCceeeccCCCCchhHHHHHHHHHHHHHhCCCCccc-ccccCC---------cc-c--cchhhhhhhh---hcCC
Q 008516          160 PAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQEN-DLNVRS---------SD-A--SSSAHAEDVF---VRRK  223 (563)
Q Consensus       160 ~~~~~~p~cti~~~p~~~~hci~~a~~~lf~~lf~~~~~~~-~~~~~~---------~~-~--~~~~~~~~~~---~~~~  223 (563)
                      +-+++||+|||||+|+.++|||+|||+ +|+.+|+...++. .+...+         .. .  ..++.+.+.+   .+.+
T Consensus         9 ~~~ks~P~CTlrsfP~~i~HcI~WAr~-lFe~lF~~~~~~~n~~l~dp~~~~~~~~~~~~~~~~~l~~i~~~L~~~~p~~   87 (276)
T 1z7l_A            9 EFEKSIPICTLKNFPNAIEHTLQWARD-EFEGLFKQPAENVNQYLTDSKFVERTLRLAGTQPLEVLEAVQRSLVLQRPQT   87 (276)
T ss_dssp             -----CCHHHHHTCCCSHHHHHHHHHH-HHHHHHTHHHHHHHHHTTCSHHHHHHHTSSTTHHHHHHHHHHHHHTTTCCSS
T ss_pred             cCCCCCceeccCCCCCChhHHHHHHHH-HHHHHHcCCHHHHHHhhcChHHHHHHHhccchhhHHHHHHHHHHHhhcCCCc
Confidence            457899999999999999999999999 8999999654321 111100         00 0  0123333333   3457


Q ss_pred             chhHHHHHHHHhhhhhhccHHHHhcC----------CcccCC-CCCCCccccCCCCCc--chhhhcccccccc---cccc
Q 008516          224 DEDIDQYGRRIYDHVFGYNIEVASSN----------EETWKN-RNRPKPIYSADVMPE--NLTEQNGNVAKNC---VVDT  287 (563)
Q Consensus       224 ~~~~~~~a~~~f~~~F~~~I~~ll~~----------~~~W~~-~~~P~pl~~~~~~~~--~~~~~~~~~~~~~---~~~~  287 (563)
                      +++|++||+.+|+++|+++|++||.+          ++||++ ||+|+||.|+...+.  .++...++|.+..   ....
T Consensus        88 ~~~c~~~Ar~~F~k~F~~~I~qLL~~fP~D~~t~~G~~fWsg~Kr~P~PL~fd~~~~~h~~fI~aaa~L~A~~~gi~~~~  167 (276)
T 1z7l_A           88 WGDCVTWACHHWHTQYCNNIRQLLHNFPPDQLTSSGAPFWSGPKRCPHPLTFDVNNTLHLDYVMAAANLFAQTYGLTGSQ  167 (276)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHSCTTCBCTTSCBSSCSSCCCCCCCCCCTTSHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCcccCCCCCCCCCcccCCCchHHHHHHHHHHHHHHHHcCCCCCC
Confidence            88999999999999999999999988          899996 999999999965443  3333333332211   1100


Q ss_pred             hhhhH---HhhcCC-----CCCCCcccccc-----chHHHHHHHHHHHHhhh-------hccCCcccCCCcHh--HHHHH
Q 008516          288 SSVSA---MASLGL-----KNPQDTWTLLE-----SSRIFLEALKLFFAKRE-------KEIGNLSFDKDDQL--AVEFV  345 (563)
Q Consensus       288 ~~~~~---~~~~~~-----~~~~~~~s~~e-----~~~~f~~~~~~l~~~~~-------~~~~~l~FdKDDd~--h~dFV  345 (563)
                      +....   .....+     +...+++..+.     ...++.++++++..+..       ..+.|++||||||+  |||||
T Consensus       168 d~~~i~~~~~~~~vp~f~p~~~~ki~~~e~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~pl~FeKDDd~N~hmdFI  247 (276)
T 1z7l_A          168 DRAAVASLLQSVQVPEFTPKSGVKIHVSDQELQSANASVDDSRLEELKATLPSPDKLPGFKMYPIDFEKDDDSNFHMDFI  247 (276)
T ss_dssp             CHHHHHHHHHTCCCCCCCCCSSCCCCSSSCCC------CCSHHHHHHHHHSCCGGGSTTCCCCCCCCCSSCTTSSHHHHH
T ss_pred             CHHHHHHHHhcCCCCCcCCccccccccchhhhchhcccccHHHHHHHHHHhhhhhhcccccCCCcceecCCCcccHHHHH
Confidence            11110   111111     01011221110     01123345666655432       23779999999999  99999


Q ss_pred             HHHHHHHHHHcCCCCCCHHHHHhhhcccc
Q 008516          346 TAAANIRAASFGISLHSLFEAKGIAGNIV  374 (563)
Q Consensus       346 ~AasNLRA~~f~I~~~s~~~~K~iAGnII  374 (563)
                      +|||||||+||+||++|||++|+||||||
T Consensus       248 tAaSNLRA~nY~I~~~dr~~~K~IAG~II  276 (276)
T 1z7l_A          248 VAASNLRAENYDISPADRHKSKLIAGKII  276 (276)
T ss_dssp             HHHHHHHHHHTTCCCCCHHHHHHHTTC--
T ss_pred             HHHHHHHHHHcCCCcCCHHHHHHHhCCcC
Confidence            99999999999999999999999999998

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=100.00  E-value=2.2e-38  Score=332.17  Aligned_cols=155  Identities=21%  Similarity=0.424  Sum_probs=147.4

Q ss_pred             CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (563)
Q Consensus         2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~   81 (563)
                      +++++|++|++++|+|||+||+||+++|+|+++|||+|+|+|+|+|+.+||+|||||+.+|||++||++++++++++||.
T Consensus        26 ~G~~~q~~L~~~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~  105 (346)
T 1y8q_A           26 WGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPM  105 (346)
T ss_dssp             HCHHHHHHHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTT
T ss_pred             hCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCCCccccccCC
Q 008516           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPK  159 (563)
Q Consensus        82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~Cy~C~~~  159 (563)
                      ++|+++..++++  ...++++++|+||+|+||.++|.++|+.|+.+++|+|.+|+.|+.|++++.++ .++|+.|.++
T Consensus       106 v~v~~~~~~~~~--~~~~~~~~~dvVv~~~d~~~~r~~ln~~~~~~~ip~i~~~~~G~~G~v~~d~~-~~~~~~~~~~  180 (346)
T 1y8q_A          106 VDVKVDTEDIEK--KPESFFTQFDAVCLTCCSRDVIVKVDQICHKNSIKFFTGDVFGYHGYTFANLG-EHEFVEEKTK  180 (346)
T ss_dssp             SEEEEECSCGGG--CCHHHHTTCSEEEEESCCHHHHHHHHHHHHHTTCEEEEEEEEBTEEEEEEECS-EEEEEEECC-
T ss_pred             eEEEEEecccCc--chHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEeecccEEEEEEecC-CCCEEEcCCC
Confidence            999999988854  35789999999999999999999999999999999999999999999999986 7899999866

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=100.00  E-value=5.7e-35  Score=298.52  Aligned_cols=155  Identities=28%  Similarity=0.551  Sum_probs=129.0

Q ss_pred             CH-HHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516            3 SE-RQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (563)
Q Consensus         3 ~~-~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~   81 (563)
                      +. ++|++|+++||+|||+||+||+++++|+++|||+|+|+|.|+|+.|||+||| |+.+|||++||++++++++++||+
T Consensus        26 G~~~~q~kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~-~~~~diG~~Ka~aa~~~L~~iNP~  104 (292)
T 3h8v_A           26 GIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLF-FQPHQAGLSKVQAAEHTLRNINPD  104 (292)
T ss_dssp             ------CGGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC-------------CCTTSBHHHHHHHHHHHHCTT
T ss_pred             ChHHHHHHHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCccChhhccccc-CChhhcCchHHHHHHHHHHhhCCC
Confidence            44 7899999999999999999999999999999999999999999999999996 799999999999999999999999


Q ss_pred             ceEEEeccCCCCCcchHhhc-----------ccccEEEEccCCHHHHHHHHHHHHhcCCCEEEecccc--ceeeEEEEeC
Q 008516           82 MSITAHHANVKDPKFNVEFF-----------KQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTG--FLGQVTVHVK  148 (563)
Q Consensus        82 v~I~~~~~~i~~~~~~~~~~-----------~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G--~~G~v~v~~~  148 (563)
                      ++|+++..++++....++|+           +++|+||+|+||.++|.++|+.|+.+++|+|++|+.|  +.|++.++.|
T Consensus       105 v~v~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~Dn~~~R~~in~~c~~~~~Pli~~gv~~~~~~Gqv~~~~p  184 (292)
T 3h8v_A          105 VLFEVHNYNITTVENFQHFMDRISNGGLEEGKPVDLVLSCVDNFEARMTINTACNELGQTWMESGVSENAVSGHIQLIIP  184 (292)
T ss_dssp             SEEEEECCCTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCSSHHHHHHHHHHHHHHTCCEEEEEECTTSSEEEEEEECT
T ss_pred             cEEEEecccCCcHHHHHHHhhhhcccccccCCCCCEEEECCcchhhhhHHHHHHHHhCCCEEEeeeecceeEEEEEEECC
Confidence            99999999986522223454           6899999999999999999999999999999999986  8999999999


Q ss_pred             CCCccccccC
Q 008516          149 GKTECYECQP  158 (563)
Q Consensus       149 ~~t~Cy~C~~  158 (563)
                      +.++||+|..
T Consensus       185 g~t~Cy~Cl~  194 (292)
T 3h8v_A          185 GESACFACAP  194 (292)
T ss_dssp             TTSCCTTSSS
T ss_pred             CCCCCHhhcC
Confidence            9999999984

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*

Probab=100.00  E-value=7.9e-35  Score=320.27  Aligned_cols=179  Identities=20%  Similarity=0.319  Sum_probs=163.3

Q ss_pred             CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (563)
Q Consensus         2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~   81 (563)
                      +++++|++|++++|+|||+||+|||++|+|+++|||+|+|+|+|+|+.|||+|||||+.+|||++||++++++++++||+
T Consensus        22 ~G~~~q~~L~~~~VlvvG~GGlGseiak~La~aGVg~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~lNp~  101 (531)
T 1tt5_A           22 WGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSD  101 (531)
T ss_dssp             HHHHHHHHHHHCEEEEECCSHHHHHHHHHHHTTTCSEEEEECCCBBCHHHHHHCTTCCGGGBTSBHHHHHHHHHHTTCTT
T ss_pred             cCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEechhhcccCccCChhhcCcHHHHHHHHHHHHhCCC
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeccCCCCC-cchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCCCccccccCCC
Q 008516           82 MSITAHHANVKDP-KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKP  160 (563)
Q Consensus        82 v~I~~~~~~i~~~-~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~Cy~C~~~~  160 (563)
                      ++|+++...+++. ....+++++||+||+|+||.++|.++|+.|+.+++|+|++|+.|+.|++++++| .+.|+++.+  
T Consensus       102 v~v~~~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~r~~ln~~c~~~~iplI~~~~~G~~G~v~~~~p-~~~~~d~~~--  178 (531)
T 1tt5_A          102 VSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLICRTYGLVGYMRIIIK-EHPVIESHP--  178 (531)
T ss_dssp             SBCCEESSCHHHHHHSCGGGGGGCSEEEEESCCHHHHHHHHHHHHHTTCCEEEEEEETTEEEEEEECS-CEEESCCCC--
T ss_pred             CeEEEeCCCcchhhhhhHHHhcCCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEecCCeEEEEEEcC-CceeccCCC--
Confidence            9999998877421 124578999999999999999999999999999999999999999999999999 566777643  


Q ss_pred             CCCCCCceeeccCCCCchhHHHH
Q 008516          161 APKTYPVCTITSTPSKFVHCIVW  183 (563)
Q Consensus       161 ~~~~~p~cti~~~p~~~~hci~~  183 (563)
                      .+..+|.|++..+|..++||-..
T Consensus       179 ~~~~~~lr~~~p~P~~~~~~~~~  201 (531)
T 1tt5_A          179 DNALEDLRLDKPFPELREHFQSY  201 (531)
T ss_dssp             SSCCCCCCSSSCCHHHHHHHHTC
T ss_pred             CCCCCcccccCCCCCchhhhhcc
Confidence            35678999999999999998443

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=100.00  E-value=2.4e-33  Score=291.05  Aligned_cols=191  Identities=24%  Similarity=0.382  Sum_probs=158.9

Q ss_pred             CCCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC
Q 008516            1 MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP   80 (563)
Q Consensus         1 ~~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np   80 (563)
                      ++|+.++++|+++||+|||+||+||+++++|+++|||+|+|+|.|+|+.|||+|||||+.+|+|++||++++++++++||
T Consensus        23 ll~~~g~~kL~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~inP  102 (340)
T 3rui_A           23 ILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFP  102 (340)
T ss_dssp             TCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHCT
T ss_pred             hcchhhHHHHhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHhCC
Confidence            46788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEeccCCCC--------------CcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEE
Q 008516           81 QMSITAHHANVKD--------------PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVH  146 (563)
Q Consensus        81 ~v~I~~~~~~i~~--------------~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~  146 (563)
                      +++|+++..++..              .....++++++|+|++|+||.++|.++|++|+.+++|+|+++ .|+.|++.+.
T Consensus       103 ~v~v~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd~tDn~~tR~lin~~c~~~~~plI~aa-~G~~G~l~v~  181 (340)
T 3rui_A          103 LMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVINAA-LGFDSYLVMR  181 (340)
T ss_dssp             TCEEEEECCCCCCTTSCCSCHHHHHHHHHHHHHHHHHCSEEEECCSSTGGGHHHHHHHHHTTCEEEEEE-ECSSEEEEEE
T ss_pred             CCEEEEEeccccccCcccchhhhhcCCHHHHHhhhccCCEEEecCCCHHHHHHHHHHHHHcCCcEEEee-ecceEEEEEe
Confidence            9999999876521              011256889999999999999999999999999999999986 8999999886


Q ss_pred             e-------CCCCccccccCCCCCC-C------CCceeeccCCCCchhHHHHHHHHHHHHHhC
Q 008516          147 V-------KGKTECYECQPKPAPK-T------YPVCTITSTPSKFVHCIVWAKDLLFAKLFG  194 (563)
Q Consensus       147 ~-------~~~t~Cy~C~~~~~~~-~------~p~cti~~~p~~~~hci~~a~~~lf~~lf~  194 (563)
                      .       |+.++||+|.....|. +      -+.|++.. |...+..-.-|.+ ....+.+
T Consensus       182 ~g~~~~~~~~~~~Cy~C~~~~~p~~~~~~~t~~~~c~v~~-p~vg~igs~qA~E-~lk~l~~  241 (340)
T 3rui_A          182 HGNRDEQSSKQLGCYFCHDVVAPTDSLTDRTLDQMSTVTR-PGVAMMASSLAVE-LMTSLLQ  241 (340)
T ss_dssp             CCCCCSSCCCCBCCGGGGSSSCCCCCTTTCCCGGGGGCSC-HHHHHHHHHHHHH-HHHHHTS
T ss_pred             ecccccCCCCCCCeeeeCCCCCCcccccccccCCCcceec-chHHHHHHHHHHH-HHHHHhC
Confidence            4       5689999999642221 1      25688432 3222333345666 4566655

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=100.00  E-value=9.3e-33  Score=277.29  Aligned_cols=157  Identities=27%  Similarity=0.492  Sum_probs=147.8

Q ss_pred             CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (563)
Q Consensus         2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~   81 (563)
                      +++++|++|++++|+|+|+||+|++++++|+++|+|+|+|+|.|.|+.|||+||+||+.+|||++||++++++++++||+
T Consensus        18 ~g~~~q~~l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~   97 (251)
T 1zud_1           18 IALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPD   97 (251)
T ss_dssp             THHHHHHHHHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTT
T ss_pred             cCHHHHHHHhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCC-CccccccCC
Q 008516           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGK-TECYECQPK  159 (563)
Q Consensus        82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~-t~Cy~C~~~  159 (563)
                      ++|+++...+++. ...++++++|+||+|+||.++|..+|+.|+..++|+|++++.|+.|++.++.|+. ++||.|...
T Consensus        98 ~~v~~~~~~~~~~-~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~g~~G~v~~~~p~~~~~c~~cl~~  175 (251)
T 1zud_1           98 IQLTALQQRLTGE-ALKDAVARADVVLDCTDNMATRQEINAACVALNTPLITASAVGFGGQLMVLTPPWEQGCYRCLWP  175 (251)
T ss_dssp             SEEEEECSCCCHH-HHHHHHHHCSEEEECCSSHHHHHHHHHHHHHTTCCEEEEEEEBTEEEEEEECTTCTTCCHHHHCC
T ss_pred             CEEEEEeccCCHH-HHHHHHhcCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEeccccceEEEEEccCCCCCcEEEeCC
Confidence            9999998877543 2356789999999999999999999999999999999999999999999998887 799999854

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=99.97  E-value=1.4e-31  Score=281.26  Aligned_cols=156  Identities=32%  Similarity=0.496  Sum_probs=145.0

Q ss_pred             CHHH-HHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516            3 SERQ-LEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (563)
Q Consensus         3 ~~~~-q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~   81 (563)
                      +.++ |++|++++|+|||+||+||+++++|+++|||+|+|+|.|+|+.|||+||+||+.+|||++|+++++++++++||+
T Consensus       108 ~~~~~q~~L~~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~  187 (353)
T 3h5n_A          108 NPVLVQDKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSE  187 (353)
T ss_dssp             CHHHHHHHHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTT
T ss_pred             ChHHHHHHHhCCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCC
Confidence            3455 999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeccCCCCCcchHhhcccccEEEEccCCHH-HHHHHHHHHHhcCCCEEEeccccceeeEEEE-eCCCCccccccCC
Q 008516           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLD-ARRHVNRLCLAADVPLVESGTTGFLGQVTVH-VKGKTECYECQPK  159 (563)
Q Consensus        82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~-ar~~in~~c~~~~~pli~~gt~G~~G~v~v~-~~~~t~Cy~C~~~  159 (563)
                      ++|+++..++++.....+ ++++|+||+|+||.. +|.++|+.|+.+++|+|.+|+.|..|++.++ .|+.++||+|...
T Consensus       188 v~v~~~~~~i~~~~~~~~-~~~~DlVvd~~Dn~~~~r~~ln~~c~~~~~p~i~~~~~g~~g~~g~~~~p~~~~C~~C~~~  266 (353)
T 3h5n_A          188 ISVSEIALNINDYTDLHK-VPEADIWVVSADHPFNLINWVNKYCVRANQPYINAGYVNDIAVFGPLYVPGKTGCYECQKV  266 (353)
T ss_dssp             SEEEEEECCCCSGGGGGG-SCCCSEEEECCCCSTTHHHHHHHHHHHTTCCEEEEEEETTEEEEEEEECTTTSCCTTTTC-
T ss_pred             CeEEEeecccCchhhhhH-hccCCEEEEecCChHHHHHHHHHHHHHhCCCEEEEEEeCCEEEEEEEEcCCCCCChhhcCC
Confidence            999999999876542334 899999999999999 9999999999999999999999999999776 5999999999853

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=99.97  E-value=7.4e-32  Score=296.68  Aligned_cols=191  Identities=24%  Similarity=0.402  Sum_probs=158.0

Q ss_pred             CCCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC
Q 008516            1 MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP   80 (563)
Q Consensus         1 ~~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np   80 (563)
                      ++|+.++++|+++||+||||||+||+++++|+++|||+|+|+|.|+|+.|||+||+||+.+|||++||++++++++++||
T Consensus       315 llp~~g~ekL~~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~iNP  394 (615)
T 4gsl_A          315 ILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFP  394 (615)
T ss_dssp             TCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHHCT
T ss_pred             hcchhhHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhhCC
Confidence            36788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEeccCCCC--------------CcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEE
Q 008516           81 QMSITAHHANVKD--------------PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVH  146 (563)
Q Consensus        81 ~v~I~~~~~~i~~--------------~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~  146 (563)
                      +++|+++..++..              .....++++++|+||+|+||.++|.++|++|+.+++|+|+++ .|+.|++.+.
T Consensus       395 ~V~v~~~~~~Ipm~gh~v~~e~~~~l~~~~l~~ll~~~DlVvd~tDn~~tR~~ln~~c~~~~~PlI~aa-lG~~Gql~v~  473 (615)
T 4gsl_A          395 LMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVINAA-LGFDSYLVMR  473 (615)
T ss_dssp             TCEEEEECCCCCCTTCCCSCHHHHHHHHHHHHHHHHHCSEEEECCSSGGGTHHHHHHHHHTTCEEEEEE-ECSSEEEEEE
T ss_pred             CcEEEEeeccccccCccccchhhhcCCHHHHHHHhhcCCEEEecCCCHHHHHHHHHHHHHcCCeEEEEE-ccceeEEEEe
Confidence            9999999876521              011246789999999999999999999999999999999986 8999999876


Q ss_pred             e-------CCCCccccccCCCCCC-C------CCceeeccCCCCchhHHHHHHHHHHHHHhC
Q 008516          147 V-------KGKTECYECQPKPAPK-T------YPVCTITSTPSKFVHCIVWAKDLLFAKLFG  194 (563)
Q Consensus       147 ~-------~~~t~Cy~C~~~~~~~-~------~p~cti~~~p~~~~hci~~a~~~lf~~lf~  194 (563)
                      .       ++.++||+|.....|. +      -+.|++.. |...+....-|.+ ....+.+
T Consensus       474 ~g~~~~~~~~~~~CY~Cl~~~~P~~~~~~rtl~~~C~Vl~-P~vgiigs~qA~E-aLk~Ll~  533 (615)
T 4gsl_A          474 HGNRDEQSSKQLGCYFCHDVVAPTDSLTDRTLDQMCTVTR-PGVAMMASSLAVE-LMTSLLQ  533 (615)
T ss_dssp             CCC------CCCCCTTTSCSSCTTSCTTTTTTTCTTCCCC-HHHHHHHHHHHHH-HHHHHHS
T ss_pred             ecccccCCCCCCCceeeCCCCCCcccccccccccCcceec-chHHHHHHHHHHH-HHHHHhC
Confidence            4       4689999999642221 1      24688432 3222333445666 4566655

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=99.97  E-value=1.8e-31  Score=267.65  Aligned_cols=157  Identities=36%  Similarity=0.614  Sum_probs=146.9

Q ss_pred             CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (563)
Q Consensus         2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~   81 (563)
                      +++++|++|++++|+|||+||+|++++++|+++|+|+|+|+|.|.|+.|||+||+||+.+|||++|+++++++++++||.
T Consensus        21 ~g~~~q~~l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~  100 (249)
T 1jw9_B           21 FDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPH  100 (249)
T ss_dssp             THHHHHHHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTT
T ss_pred             cCHHHHHHHhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCC-CccccccCC
Q 008516           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGK-TECYECQPK  159 (563)
Q Consensus        82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~-t~Cy~C~~~  159 (563)
                      ++|+++..++++. ...++++++|+||+|+||.++|..+++.|+..++|+|++++.|+.|++.++.|+. ++||.|...
T Consensus       101 ~~v~~~~~~~~~~-~~~~~~~~~DvVi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~g~~g~v~~~~p~~~~~c~~c~~~  178 (249)
T 1jw9_B          101 IAITPVNALLDDA-ELAALIAEHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIRMEGQITVFTYQDGEPCYRCLSR  178 (249)
T ss_dssp             SEEEEECSCCCHH-HHHHHHHTSSEEEECCSSHHHHHHHHHHHHHHTCCEEEEEEEBTEEEEEEECCCTTCCCTHHHHT
T ss_pred             cEEEEEeccCCHh-HHHHHHhCCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEeeeccceEEEEEEeCCCCCCceEEECC
Confidence            9999998877532 2246789999999999999999999999999999999999999999999998877 799999853

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=99.97  E-value=1.4e-31  Score=294.41  Aligned_cols=191  Identities=25%  Similarity=0.397  Sum_probs=158.6

Q ss_pred             CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (563)
Q Consensus         2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~   81 (563)
                      +|+.+|++|+++||+||||||+||+++++|+++|||+|+|+|.|+|+.|||+||+||+.+|||++||++++++++++||+
T Consensus       317 l~~~gq~kL~~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~DvG~~KAeaaa~~L~~iNP~  396 (598)
T 3vh1_A          317 LPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPL  396 (598)
T ss_dssp             CTTCCHHHHHTCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCSBCCTTSTTTSTTCCSTTCSSBHHHHHHHHHHHHCTT
T ss_pred             cchhhHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccchhhcCcHHHHHHHHHHHhHCCC
Confidence            56778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeccCCCC--------------CcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEe
Q 008516           82 MSITAHHANVKD--------------PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHV  147 (563)
Q Consensus        82 v~I~~~~~~i~~--------------~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~  147 (563)
                      ++|+++..++..              .....++++++|+||+|+||.++|..+|++|+.+++|+|++ +.|+.|++.+..
T Consensus       397 v~v~~~~~~I~~pgh~i~~~~~~~l~~~~l~~li~~~DvVvdatDn~~tR~lin~~c~~~~~plI~a-a~G~~Gqv~v~~  475 (598)
T 3vh1_A          397 MDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVINA-ALGFDSYLVMRH  475 (598)
T ss_dssp             CEEEEECCCCCCSSCCCCSHHHHHHHHHHHHHHHHHCSEEEECCSBGGGTHHHHHHHHHTTCEEEEE-EECSSEEEEEEE
T ss_pred             cEEEEEeccccccCcccccccccccCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHhcCCCEEEE-EECCccEEEEEc
Confidence            999999877521              01124688999999999999999999999999999999996 689999998774


Q ss_pred             C-------CCCccccccCCCCCC------C-CCceeeccCCCCchhHHHHHHHHHHHHHhCC
Q 008516          148 K-------GKTECYECQPKPAPK------T-YPVCTITSTPSKFVHCIVWAKDLLFAKLFGD  195 (563)
Q Consensus       148 ~-------~~t~Cy~C~~~~~~~------~-~p~cti~~~p~~~~hci~~a~~~lf~~lf~~  195 (563)
                      +       +.++||+|.....|.      + .+.|++.. |...+.....|.+ ....+.+.
T Consensus       476 g~~p~~~~~~~~Cy~Cl~~~~p~~~~~~~tld~~C~Vl~-p~vgvigslqA~E-alk~Llg~  535 (598)
T 3vh1_A          476 GNRDEQSSKQLGCYFCHDVVAPTDSLTDRTLDQMCTVTR-PGVAMMASSLAVE-LMTSLLQT  535 (598)
T ss_dssp             C--------CBCCTTTSCSSCSSSCTTTTTTTBSCCCSC-THHHHHHHHHHHH-HHHHHHSC
T ss_pred             cCCCccCCCCCCceeecCccCCCccccccccCCCCCccC-cHHHHHHHHHHHH-HHHHHhCC
Confidence            2       367899998432221      1 35687532 3333444557777 57777764

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3e-30  Score=300.83  Aligned_cols=174  Identities=20%  Similarity=0.424  Sum_probs=158.7

Q ss_pred             CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (563)
Q Consensus         2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~   81 (563)
                      +++++|++|++++|+|||+||+||+++|+|+++|||+|+|+|.|+|+.+||+||||++.+|||++||++++++++++||.
T Consensus        17 ~G~~~q~rL~~s~VlIvG~GGlGseiak~La~aGVg~itlvD~D~V~~sNL~RQ~l~~~~dvG~~Ka~a~~~~L~~lNP~   96 (1015)
T 3cmm_A           17 LGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLSTQFFLTEKDIGQKRGDVTRAKLAELNAY   96 (1015)
T ss_dssp             SCHHHHHHHTTCEEEEECCSHHHHHHHHHHHHHCCSEEEEECCSBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHTTSCTT
T ss_pred             cCHHHHHHHhcCEEEEECCChHHHHHHHHHHHcCCCeEEEecCCEechhhhccccccChhhcChHHHHHHHHHHHHHCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeccCCCCCcchHhhcccccEEEEccC-CHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCCCccccccC--
Q 008516           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLD-NLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQP--  158 (563)
Q Consensus        82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alD-n~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~Cy~C~~--  158 (563)
                      ++|+++...++     .++++++|+||+|.| |.++|..+|++|+.+++|+|.+++.|+.|++++..   ++||.|..  
T Consensus        97 v~v~~~~~~l~-----~~~l~~~DvVv~~~d~~~~~r~~ln~~c~~~~iplI~~~~~G~~G~v~~d~---~~~~~c~~~~  168 (1015)
T 3cmm_A           97 VPVNVLDSLDD-----VTQLSQFQVVVATDTVSLEDKVKINEFCHSSGIRFISSETRGLFGNTFVDL---GDEFTVLDPT  168 (1015)
T ss_dssp             SCEEECCCCCC-----STTGGGCSEEEECTTSCHHHHHHHHHHHHHHTCEEEEEEEETTEEEEEEEC---CSCEEESBSS
T ss_pred             CeEEEecCCCC-----HHHHhcCCEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEEecccEEEEEecC---CCceEEeeCC
Confidence            99999988774     358899999999999 99999999999999999999999999999998754   56788864  


Q ss_pred             CCCCCCCCceeeccCCCCchhHHHHHH
Q 008516          159 KPAPKTYPVCTITSTPSKFVHCIVWAK  185 (563)
Q Consensus       159 ~~~~~~~p~cti~~~p~~~~hci~~a~  185 (563)
                      ++.|.++++|+| +.| ..+||+.+.+
T Consensus       169 ~~~p~~~~i~~i-~~p-~~v~~l~~~~  193 (1015)
T 3cmm_A          169 GEEPRTGMVSDI-EPD-GTVTMLDDNR  193 (1015)
T ss_dssp             CCCCCEEEEEEE-CTT-CEEEESTTCC
T ss_pred             CCCCccccccCC-CCC-ceeEeeeccc
Confidence            345678889999 555 5789987544

>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A

Probab=98.69  E-value=1.9e-08  Score=85.75  Aligned_cols=78  Identities=15%  Similarity=0.152  Sum_probs=63.0

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHHHH--hcCCCcCeEEec----CeEEEeeCCCchHHHHHHhhhhhhcchhhhcCcc
Q 008516          432 VCSETPLSLEINTSRSKLRDFVEKIVKA--KLGINFPLIMHG----SNLLYEVGDDLDEVEVANYAANLEKVKIQASSVT  505 (563)
Q Consensus       432 vC~~~~~~l~i~~~~~TL~~li~~~lk~--~~~l~~~~i~~g----~~~LY~~~~~~~~~~~~~~~~nl~k~L~el~~gv  505 (563)
                      +|+.....++++. ++||++|||.+ .+  ++.|..|+|+.+    ++.||...   .+..+++++.||.|+|.||  |+
T Consensus         1 ~Cg~~~~~l~v~~-~~TL~~lid~L-~~~p~~qlk~PSltt~~~~~~k~LYmq~---pp~Lee~Tr~NL~k~l~eL--gl   73 (98)
T 1y8x_B            1 GSSQLPQNIQFSP-SAKLQEVLDYL-TNSASLQMKSPAITATLEGKNRTLYMQS---VTSIEERTRPNLSKTLKEL--GL   73 (98)
T ss_dssp             ----CCCCEECCT-TCBHHHHHHHH-HHCTTCCCSSCEEEEEETTEEEEEECSS---CHHHHHHHHHHHHSBSGGG--TC
T ss_pred             CCCCCcEEEEECC-chhHHHHHHHH-HhChHhhccCCeeeeecCCCCCeEEEeC---cHHHHHHhHhhhhCCHHHh--CC
Confidence            4776666788884 78999999994 55  789999999998    89999765   3577788999999999999  99


Q ss_pred             cCCCcceeecc
Q 008516          506 LCSSPPDFCCS  516 (563)
Q Consensus       506 ~~g~~~~~~~~  516 (563)
                      .+|+.+.|++-
T Consensus        74 ~~g~ei~VtD~   84 (98)
T 1y8x_B           74 VDGQELAVADV   84 (98)
T ss_dssp             CTTCEEEEECT
T ss_pred             CCCCEEEEECC
Confidence            99999888643

>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine half-domain, ligase; HET: TBR; 2.80A {Mus musculus}

Probab=98.53  E-value=5.1e-08  Score=98.39  Aligned_cols=62  Identities=18%  Similarity=0.369  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHh----------------hhhccCCcccCCCcHhHHHHHHHHHHHHHHHcCCCC-CCHHHHHhhhccc
Q 008516          312 RIFLEALKLFFAK----------------REKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISL-HSLFEAKGIAGNI  373 (563)
Q Consensus       312 ~~f~~~~~~l~~~----------------~~~~~~~l~FdKDDd~h~dFV~AasNLRA~~f~I~~-~s~~~~K~iAGnI  373 (563)
                      ..|...+++|+..                .+....||+||..|+.|++||.|||||||.+|||+. .|+-.+..++.++
T Consensus       101 k~F~~~I~qLL~~fP~D~~t~~G~~fWsg~Kr~P~PL~fd~~~~~h~~fI~aaa~L~A~~~gi~~~~d~~~i~~~~~~~  179 (276)
T 1z7l_A          101 TQYCNNIRQLLHNFPPDQLTSSGAPFWSGPKRCPHPLTFDVNNTLHLDYVMAAANLFAQTYGLTGSQDRAAVASLLQSV  179 (276)
T ss_dssp             HHHTHHHHHHHHHSCTTCBCTTSCBSSCSSCCCCCCCCCCTTSHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhCCccccccCCCcccCCCCCCCCCcccCCCchHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhcC
Confidence            3566777888765                122367999999999999999999999999999986 4555555555443

>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A

Probab=98.43  E-value=2.4e-07  Score=81.60  Aligned_cols=80  Identities=16%  Similarity=0.183  Sum_probs=62.8

Q ss_pred             cEEEEEcC---CCCCHHHHHHHHHHHhcCCCc-CeEEe--cCeEEEeeCCCchHHHHHHhhhhhhcchhhhcCcccCCCc
Q 008516          437 PLSLEINT---SRSKLRDFVEKIVKAKLGINF-PLIMH--GSNLLYEVGDDLDEVEVANYAANLEKVKIQASSVTLCSSP  510 (563)
Q Consensus       437 ~~~l~i~~---~~~TL~~li~~~lk~~~~l~~-~~i~~--g~~~LY~~~~~~~~~~~~~~~~nl~k~L~el~~gv~~g~~  510 (563)
                      +..+.++.   +++||++||+. ++++||+.. -+|.-  +.++||+++          +++|++|+|++|  |+++|+.
T Consensus         7 Rgvl~v~~~dl~~~TL~dLV~~-l~~~~gy~~eiSV~~~~~~rLLyD~D----------fDDnl~k~L~dL--gv~~gsf   73 (127)
T 3onh_A            7 RGVIKLSSDCLNKMKLSDFVVL-IREKYSYPQDISLLDASNQRLLFDYD----------FEDLNDRTLSEI--NLGNGSI   73 (127)
T ss_dssp             EEEEEECHHHHHHCBHHHHHHH-HHHHHTCCSSEEEEETTTTEEEEETT----------BCTTTTSBTTTT--TCCTTCE
T ss_pred             EEEEEeCcccccccCHHHHHHH-HHHhcCCCCcEEEEecCCCCeEeCCC----------ccccccCcHHHc--CcCCCcE
Confidence            44677765   67999999999 799999975 23442  478999987          458999999999  9999999


Q ss_pred             ceeeccCCC----ccceeeEEee
Q 008516          511 PDFCCSCND----ADVLLFCFFN  529 (563)
Q Consensus       511 ~~~~~~~~~----~d~~~~~~~~  529 (563)
                      +.+++..++    ..+-+|-.++
T Consensus        74 Ltv~DEdde~~~r~~lelyi~~~   96 (127)
T 3onh_A           74 ILFSDEEGDTMIRKAIELFLDVD   96 (127)
T ss_dssp             EEEEESCCSSEEECCEEEEEEEC
T ss_pred             EEEEccccccccccCEEEEEEec
Confidence            999988755    3566665553

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.66  E-value=0.00016  Score=61.65  Aligned_cols=96  Identities=19%  Similarity=0.181  Sum_probs=65.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i   91 (563)
                      .++|+|+|+|++|..+++.|...|..+++++|.+                   ..|.+.+.      .+.+.+  ...++
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~-------------------~~~~~~~~------~~~~~~--~~~d~   57 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHD-------------------LAALAVLN------RMGVAT--KQVDA   57 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESC-------------------HHHHHHHH------TTTCEE--EECCT
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCC-------------------HHHHHHHH------hCCCcE--EEecC
Confidence            4689999999999999999999996678888743                   12222221      233333  33444


Q ss_pred             CCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEec
Q 008516           92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG  135 (563)
Q Consensus        92 ~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~g  135 (563)
                      .+...-.+.++++|+||+++.. .....+.+.|...+++.++..
T Consensus        58 ~~~~~~~~~~~~~d~vi~~~~~-~~~~~~~~~~~~~g~~~~~~~  100 (118)
T 3ic5_A           58 KDEAGLAKALGGFDAVISAAPF-FLTPIIAKAAKAAGAHYFDLT  100 (118)
T ss_dssp             TCHHHHHHHTTTCSEEEECSCG-GGHHHHHHHHHHTTCEEECCC
T ss_pred             CCHHHHHHHHcCCCEEEECCCc-hhhHHHHHHHHHhCCCEEEec
Confidence            4332234567899999999854 344566778889999888754

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.56  E-value=0.00016  Score=73.26  Aligned_cols=79  Identities=24%  Similarity=0.346  Sum_probs=63.1

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      +++++++|+|+||+|..++..|+..|+++|+|++.+                   ..|++.+++.+....|.+++.+...
T Consensus       125 l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~-------------------~~~a~~la~~~~~~~~~~~i~~~~~  185 (283)
T 3jyo_A          125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD-------------------TSRAQALADVINNAVGREAVVGVDA  185 (283)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSS-------------------HHHHHHHHHHHHHHHTSCCEEEECS
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECC-------------------HHHHHHHHHHHHhhcCCceEEEcCH
Confidence            568899999999999999999999999999998643                   3688888888888777777766541


Q ss_pred             CCCCCcchHhhcccccEEEEccC
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGLD  112 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~alD  112 (563)
                        .  . -.+.+.++|+||+|+.
T Consensus       186 --~--~-l~~~l~~~DiVInaTp  203 (283)
T 3jyo_A          186 --R--G-IEDVIAAADGVVNATP  203 (283)
T ss_dssp             --T--T-HHHHHHHSSEEEECSS
T ss_pred             --H--H-HHHHHhcCCEEEECCC
Confidence              1  1 1345678999999975

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.28  E-value=0.0017  Score=58.84  Aligned_cols=101  Identities=13%  Similarity=0.117  Sum_probs=61.9

Q ss_pred             HHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516            8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus         8 ~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      +++.+.+|+|+|+|.+|..+++.|...|. +++++|.+.-....+.+.                        .+..+  .
T Consensus        15 ~~~~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~------------------------~g~~~--~   67 (155)
T 2g1u_A           15 KKQKSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAFHRLNSE------------------------FSGFT--V   67 (155)
T ss_dssp             --CCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGGGGSCTT------------------------CCSEE--E
T ss_pred             cccCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHhc------------------------CCCcE--E
Confidence            45677899999999999999999999997 799998764322222100                        01111  1


Q ss_pred             ccCCCCCcchHh-hcccccEEEEccCCHHHHHHHHHHHHh-cCCCEEEec
Q 008516           88 HANVKDPKFNVE-FFKQFNVVLNGLDNLDARRHVNRLCLA-ADVPLVESG  135 (563)
Q Consensus        88 ~~~i~~~~~~~~-~~~~~dvVi~alDn~~ar~~in~~c~~-~~~pli~~g  135 (563)
                      ..+..+...-.+ -+.++|+||.++.+......+...++. .+...+-+-
T Consensus        68 ~~d~~~~~~l~~~~~~~ad~Vi~~~~~~~~~~~~~~~~~~~~~~~~iv~~  117 (155)
T 2g1u_A           68 VGDAAEFETLKECGMEKADMVFAFTNDDSTNFFISMNARYMFNVENVIAR  117 (155)
T ss_dssp             ESCTTSHHHHHTTTGGGCSEEEECSSCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred             EecCCCHHHHHHcCcccCCEEEEEeCCcHHHHHHHHHHHHHCCCCeEEEE
Confidence            111111000011 156899999999998877777777765 454444433

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.08  E-value=0.005  Score=54.53  Aligned_cols=97  Identities=13%  Similarity=0.112  Sum_probs=62.9

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      ....+|+|+|+|.+|..+++.|...|. +++++|.|.                   .+.+.+    ++.  ..  ..+..
T Consensus         4 ~~~~~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~~-------------------~~~~~~----~~~--~~--~~~~g   55 (141)
T 3llv_A            4 NGRYEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKSK-------------------EKIELL----EDE--GF--DAVIA   55 (141)
T ss_dssp             --CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCH-------------------HHHHHH----HHT--TC--EEEEC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECCH-------------------HHHHHH----HHC--CC--cEEEC
Confidence            345789999999999999999999997 688988541                   122222    221  22  33444


Q ss_pred             CCCCCcchHh-hcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEe
Q 008516           90 NVKDPKFNVE-FFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVES  134 (563)
Q Consensus        90 ~i~~~~~~~~-~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~  134 (563)
                      +.++...-.+ -..++|+||.++++.+....+...++..+.+.+-+
T Consensus        56 d~~~~~~l~~~~~~~~d~vi~~~~~~~~n~~~~~~a~~~~~~~iia  101 (141)
T 3llv_A           56 DPTDESFYRSLDLEGVSAVLITGSDDEFNLKILKALRSVSDVYAIV  101 (141)
T ss_dssp             CTTCHHHHHHSCCTTCSEEEECCSCHHHHHHHHHHHHHHCCCCEEE
T ss_pred             CCCCHHHHHhCCcccCCEEEEecCCHHHHHHHHHHHHHhCCceEEE
Confidence            4433211111 24689999999998887777777777765544433

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=97.04  E-value=0.0023  Score=67.74  Aligned_cols=101  Identities=22%  Similarity=0.298  Sum_probs=71.9

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhC-C-CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSG-F-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~G-v-g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      +||+|+|+|++|..+++.|+..| + ..+++.|.+                   ..|++.+++.+....+ .++.....+
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~-------------------~~~~~~la~~l~~~~~-~~~~~~~~D   61 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRT-------------------LSKCQEIAQSIKAKGY-GEIDITTVD   61 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESC-------------------HHHHHHHHHHHHHTTC-CCCEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECC-------------------HHHHHHHHHHhhhhcC-CceEEEEec
Confidence            48999999999999999999988 3 688888743                   2466666666654321 234455555


Q ss_pred             CCCCcchHhhccc--ccEEEEccCCHHHHHHHHHHHHhcCCCEEEe
Q 008516           91 VKDPKFNVEFFKQ--FNVVLNGLDNLDARRHVNRLCLAADVPLVES  134 (563)
Q Consensus        91 i~~~~~~~~~~~~--~dvVi~alDn~~ar~~in~~c~~~~~pli~~  134 (563)
                      +++...-.+.+++  .|+||++..... ...+.+.|.+.++.+++.
T Consensus        62 ~~d~~~l~~~l~~~~~DvVin~ag~~~-~~~v~~a~l~~g~~vvD~  106 (405)
T 4ina_A           62 ADSIEELVALINEVKPQIVLNIALPYQ-DLTIMEACLRTGVPYLDT  106 (405)
T ss_dssp             TTCHHHHHHHHHHHCCSEEEECSCGGG-HHHHHHHHHHHTCCEEES
T ss_pred             CCCHHHHHHHHHhhCCCEEEECCCccc-ChHHHHHHHHhCCCEEEe
Confidence            5443223456666  899999987543 456678899999999985

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.00  E-value=0.0011  Score=64.78  Aligned_cols=91  Identities=18%  Similarity=0.228  Sum_probs=65.8

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      .|++.+|+|||+|.+|...++.|...|. +++++|.+.-                  +   .+.+...+  ..+.  ...
T Consensus        28 ~L~gk~VLVVGgG~va~~ka~~Ll~~GA-~VtVvap~~~------------------~---~l~~l~~~--~~i~--~i~   81 (223)
T 3dfz_A           28 DLKGRSVLVVGGGTIATRRIKGFLQEGA-AITVVAPTVS------------------A---EINEWEAK--GQLR--VKR   81 (223)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHGGGCC-CEEEECSSCC------------------H---HHHHHHHT--TSCE--EEC
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCCC------------------H---HHHHHHHc--CCcE--EEE
Confidence            3788999999999999999999999996 7999986411                  0   11121111  2233  332


Q ss_pred             cCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCE
Q 008516           89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPL  131 (563)
Q Consensus        89 ~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pl  131 (563)
                      ..     +..+.+.++|+||.|+|+.+.-..+.+.|. .++|+
T Consensus        82 ~~-----~~~~dL~~adLVIaAT~d~~~N~~I~~~ak-~gi~V  118 (223)
T 3dfz_A           82 KK-----VGEEDLLNVFFIVVATNDQAVNKFVKQHIK-NDQLV  118 (223)
T ss_dssp             SC-----CCGGGSSSCSEEEECCCCTHHHHHHHHHSC-TTCEE
T ss_pred             CC-----CCHhHhCCCCEEEECCCCHHHHHHHHHHHh-CCCEE
Confidence            22     345567899999999999998888888887 77774

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.99  E-value=0.0025  Score=56.00  Aligned_cols=94  Identities=20%  Similarity=0.321  Sum_probs=55.6

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      ++...+|+|+|+|++|..+++.|...|. +++++|.+.-....+                       ++.  ...  ...
T Consensus         3 ~~~~~~v~I~G~G~iG~~~a~~l~~~g~-~v~~~d~~~~~~~~~-----------------------~~~--~~~--~~~   54 (144)
T 2hmt_A            3 RIKNKQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAY-----------------------ASY--ATH--AVI   54 (144)
T ss_dssp             ---CCSEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHTT-----------------------TTT--CSE--EEE
T ss_pred             CCcCCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH-----------------------HHh--CCE--EEE
Confidence            4567789999999999999999999996 688888653111111                       111  111  122


Q ss_pred             cCCCCCcchHh-hcccccEEEEccCCH-HHHHHHHHHHHhcCCC
Q 008516           89 ANVKDPKFNVE-FFKQFNVVLNGLDNL-DARRHVNRLCLAADVP  130 (563)
Q Consensus        89 ~~i~~~~~~~~-~~~~~dvVi~alDn~-~ar~~in~~c~~~~~p  130 (563)
                      .+.++...-.+ -+.++|+|+.++.+. .....+...++..+.+
T Consensus        55 ~d~~~~~~l~~~~~~~~d~vi~~~~~~~~~~~~~~~~~~~~~~~   98 (144)
T 2hmt_A           55 ANATEENELLSLGIRNFEYVIVAIGANIQASTLTTLLLKELDIP   98 (144)
T ss_dssp             CCTTCHHHHHTTTGGGCSEEEECCCSCHHHHHHHHHHHHHTTCS
T ss_pred             eCCCCHHHHHhcCCCCCCEEEECCCCchHHHHHHHHHHHHcCCC
Confidence            22221111111 157899999998864 5445566666665544

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=96.90  E-value=0.0028  Score=65.90  Aligned_cols=94  Identities=22%  Similarity=0.331  Sum_probs=63.7

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      +++||+|+|||.+|..+++.|+..  ..+++.|.+                   ..+.+       +..+.+.  ....+
T Consensus        15 ~~mkilvlGaG~vG~~~~~~L~~~--~~v~~~~~~-------------------~~~~~-------~~~~~~~--~~~~d   64 (365)
T 3abi_A           15 RHMKVLILGAGNIGRAIAWDLKDE--FDVYIGDVN-------------------NENLE-------KVKEFAT--PLKVD   64 (365)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHTTT--SEEEEEESC-------------------HHHHH-------HHTTTSE--EEECC
T ss_pred             CccEEEEECCCHHHHHHHHHHhcC--CCeEEEEcC-------------------HHHHH-------HHhccCC--cEEEe
Confidence            467899999999999999999753  478877632                   12222       2222222  22334


Q ss_pred             CCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEec
Q 008516           91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG  135 (563)
Q Consensus        91 i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~g  135 (563)
                      +.+...-.++++++|+||+++... .-..+.+.|.+.++.+++..
T Consensus        65 ~~d~~~l~~~~~~~DvVi~~~p~~-~~~~v~~~~~~~g~~yvD~s  108 (365)
T 3abi_A           65 ASNFDKLVEVMKEFELVIGALPGF-LGFKSIKAAIKSKVDMVDVS  108 (365)
T ss_dssp             TTCHHHHHHHHTTCSEEEECCCGG-GHHHHHHHHHHHTCEEEECC
T ss_pred             cCCHHHHHHHHhCCCEEEEecCCc-ccchHHHHHHhcCcceEeee
Confidence            433333356789999999999754 34568899999999999964

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.76  E-value=0.0054  Score=53.54  Aligned_cols=90  Identities=19%  Similarity=0.273  Sum_probs=54.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i   91 (563)
                      ..+|+|+|+|.+|..+++.|...|. +++++|.+.                   .+++.+++   +.  ++.  .+..+.
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~~-------------------~~~~~~~~---~~--~~~--~~~~d~   56 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDK-------------------DICKKASA---EI--DAL--VINGDC   56 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHH---HC--SSE--EEESCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH-------------------HHHHHHHH---hc--CcE--EEEcCC
Confidence            3689999999999999999999995 688888432                   12221111   11  222  222222


Q ss_pred             CCCc-chHhhcccccEEEEccCCHHHHHHHHHHHHhcC
Q 008516           92 KDPK-FNVEFFKQFNVVLNGLDNLDARRHVNRLCLAAD  128 (563)
Q Consensus        92 ~~~~-~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~  128 (563)
                      .+.. .....+.++|+|+.++.+......+...+...+
T Consensus        57 ~~~~~l~~~~~~~~d~vi~~~~~~~~~~~~~~~~~~~~   94 (140)
T 1lss_A           57 TKIKTLEDAGIEDADMYIAVTGKEEVNLMSSLLAKSYG   94 (140)
T ss_dssp             TSHHHHHHTTTTTCSEEEECCSCHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHcCcccCCEEEEeeCCchHHHHHHHHHHHcC
Confidence            2111 111225689999999988766555556665544

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.74  E-value=0.0051  Score=59.15  Aligned_cols=104  Identities=16%  Similarity=0.150  Sum_probs=61.4

Q ss_pred             HHHHHHHcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCc
Q 008516            4 ERQLEAIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQM   82 (563)
Q Consensus         4 ~~~q~kL~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v   82 (563)
                      .....++++++|+|.|+ |+||.++++.|+..|. ++++++.+.                   .+.+.+    ..  +  
T Consensus        13 ~~~~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~-------------------~~~~~~----~~--~--   64 (236)
T 3e8x_A           13 GRENLYFQGMRVLVVGANGKVARYLLSELKNKGH-EPVAMVRNE-------------------EQGPEL----RE--R--   64 (236)
T ss_dssp             --------CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSG-------------------GGHHHH----HH--T--
T ss_pred             cccccCcCCCeEEEECCCChHHHHHHHHHHhCCC-eEEEEECCh-------------------HHHHHH----Hh--C--
Confidence            34567899999999997 9999999999999996 788876432                   111111    11  1  


Q ss_pred             eE-EEeccCCCCCcchHhhcccccEEEEccC-------------CHHHHHHHHHHHHhcCC-CEEEeccc
Q 008516           83 SI-TAHHANVKDPKFNVEFFKQFNVVLNGLD-------------NLDARRHVNRLCLAADV-PLVESGTT  137 (563)
Q Consensus        83 ~I-~~~~~~i~~~~~~~~~~~~~dvVi~alD-------------n~~ar~~in~~c~~~~~-pli~~gt~  137 (563)
                      .+ +.+..+++ . .-.+.+.+.|+||++..             |...-..+-+.|++.+. .+|..++.
T Consensus        65 ~~~~~~~~Dl~-~-~~~~~~~~~D~vi~~ag~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~  132 (236)
T 3e8x_A           65 GASDIVVANLE-E-DFSHAFASIDAVVFAAGSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSV  132 (236)
T ss_dssp             TCSEEEECCTT-S-CCGGGGTTCSEEEECCCCCTTSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCT
T ss_pred             CCceEEEcccH-H-HHHHHHcCCCEEEECCCCCCCCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecC
Confidence            23 44555555 2 22456789999999653             33333455566666654 46665553

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=96.72  E-value=0.0027  Score=65.13  Aligned_cols=84  Identities=18%  Similarity=0.203  Sum_probs=58.5

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      +++++++|+|+||+|..++..|+..|+++|+|++.+.                --..|++.+++.+....+ +.+.... 
T Consensus       152 l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~----------------~~~~~a~~la~~~~~~~~-~~~~~~~-  213 (315)
T 3tnl_A          152 IIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKD----------------DFYANAEKTVEKINSKTD-CKAQLFD-  213 (315)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS----------------TTHHHHHHHHHHHHHHSS-CEEEEEE-
T ss_pred             ccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCC----------------chHHHHHHHHHHhhhhcC-CceEEec-
Confidence            5678999999999999999999999999999986331                013578888887776543 4444432 


Q ss_pred             CCCCCcchHhhcccccEEEEccC
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGLD  112 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~alD  112 (563)
                       +.+...-.+.+.++|+||+|+.
T Consensus       214 -~~~~~~l~~~l~~aDiIINaTp  235 (315)
T 3tnl_A          214 -IEDHEQLRKEIAESVIFTNATG  235 (315)
T ss_dssp             -TTCHHHHHHHHHTCSEEEECSS
T ss_pred             -cchHHHHHhhhcCCCEEEECcc
Confidence             1110001234678999999874

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=96.54  E-value=0.0074  Score=61.77  Aligned_cols=84  Identities=19%  Similarity=0.282  Sum_probs=57.6

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      +.+++++|+|+||.|..++..|+..|+++|+|++.+.                -...|++.+++.+....+ ..+.....
T Consensus       146 l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~----------------~~~~~a~~la~~~~~~~~-~~v~~~~~  208 (312)
T 3t4e_A          146 MRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKD----------------DFFEKAVAFAKRVNENTD-CVVTVTDL  208 (312)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS----------------THHHHHHHHHHHHHHHSS-CEEEEEET
T ss_pred             cCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCC----------------chHHHHHHHHHHhhhccC-cceEEech
Confidence            4678999999999999999999999999999985320                013577877777766543 34443321


Q ss_pred             CCCCCcchHhhcccccEEEEccC
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGLD  112 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~alD  112 (563)
                        .+.....+.+.++|+||||+.
T Consensus       209 --~~l~~~~~~l~~~DiIINaTp  229 (312)
T 3t4e_A          209 --ADQHAFTEALASADILTNGTK  229 (312)
T ss_dssp             --TCHHHHHHHHHHCSEEEECSS
T ss_pred             --HhhhhhHhhccCceEEEECCc
Confidence              110001344678999999875

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=96.51  E-value=0.0053  Score=61.72  Aligned_cols=112  Identities=16%  Similarity=0.360  Sum_probs=67.7

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCcc--ccCCCCCCCCchHHHHHHHHHHhh-CCC-----
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNR--QFLFRQSHVGQSKAKVARDAVLKF-RPQ-----   81 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnR--qfLf~~~diGk~Ka~va~~~l~~~-np~-----   81 (563)
                      |++++|+|||+|.+|...++.|...|. +++++|.+.-+.  +..  +-+..  +-++ ++.  ....+++ ++.     
T Consensus        11 l~~k~VLVVGgG~va~rka~~Ll~~Ga-~VtViap~~~~~--l~~~~~~l~~--~~~~-~~~--~~~~~~~~~~~~~~~~   82 (274)
T 1kyq_A           11 LKDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSPDLHKS--IIPKFGKFIQ--NKDQ-PDY--REDAKRFINPNWDPTK   82 (274)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEEEEECTT--HHHHHCGGGC----------------CEEECTTCCTTS
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHhCCC-EEEEEcCCCCcc--hhHHHHHHHh--cccc-ccc--cchhhccccccccccc
Confidence            678999999999999999999999995 699999765211  100  00000  0000 000  0000111 111     


Q ss_pred             ceE-EEeccCCCCCcchHhhcc------cccEEEEccCCHHHHHHHHHHHHhc---CCCEEEe
Q 008516           82 MSI-TAHHANVKDPKFNVEFFK------QFNVVLNGLDNLDARRHVNRLCLAA---DVPLVES  134 (563)
Q Consensus        82 v~I-~~~~~~i~~~~~~~~~~~------~~dvVi~alDn~~ar~~in~~c~~~---~~pli~~  134 (563)
                      -+| ..+...     +..+.+.      ++|+||.|+++.+....+.+.|+..   ++|+--+
T Consensus        83 g~i~~~i~~~-----~~~~dL~~l~~~~~adlViaat~d~~~n~~I~~~Ar~~f~~~i~VNvv  140 (274)
T 1kyq_A           83 NEIYEYIRSD-----FKDEYLDLENENDAWYIIMTCIPDHPESARIYHLCKERFGKQQLVNVA  140 (274)
T ss_dssp             CCCSEEECSS-----CCGGGGCCSSTTCCEEEEEECCSCHHHHHHHHHHHHHHHCTTSEEEET
T ss_pred             CCeeEEEcCC-----CCHHHHhhcccCCCeEEEEEcCCChHHHHHHHHHHHHhcCCCcEEEEC
Confidence            122 333322     2334455      8999999999998888999999998   7766333

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.47  E-value=0.0097  Score=56.93  Aligned_cols=95  Identities=17%  Similarity=0.177  Sum_probs=62.0

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK   92 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~   92 (563)
                      ++|+|+|+|.+|..+++.|...|. .++++|.|.                   .+++.+++   +  .+.  ..+..+.+
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~-~v~vid~~~-------------------~~~~~l~~---~--~~~--~~i~gd~~   53 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKY-GVVIINKDR-------------------ELCEEFAK---K--LKA--TIIHGDGS   53 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTC-CEEEEESCH-------------------HHHHHHHH---H--SSS--EEEESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH-------------------HHHHHHHH---H--cCC--eEEEcCCC
Confidence            479999999999999999999997 688988432                   12222221   1  122  33444443


Q ss_pred             CCc-chHhhcccccEEEEccCCHHHHHHHHHHHHh-cCCCEEEe
Q 008516           93 DPK-FNVEFFKQFNVVLNGLDNLDARRHVNRLCLA-ADVPLVES  134 (563)
Q Consensus        93 ~~~-~~~~~~~~~dvVi~alDn~~ar~~in~~c~~-~~~pli~~  134 (563)
                      +.. ....-++++|+|+.++++......+...++. ++.+-+-+
T Consensus        54 ~~~~l~~a~i~~ad~vi~~~~~d~~n~~~~~~a~~~~~~~~iia   97 (218)
T 3l4b_C           54 HKEILRDAEVSKNDVVVILTPRDEVNLFIAQLVMKDFGVKRVVS   97 (218)
T ss_dssp             SHHHHHHHTCCTTCEEEECCSCHHHHHHHHHHHHHTSCCCEEEE
T ss_pred             CHHHHHhcCcccCCEEEEecCCcHHHHHHHHHHHHHcCCCeEEE
Confidence            321 1222367899999999998877777777765 45544443

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.46  E-value=0.015  Score=52.29  Aligned_cols=93  Identities=11%  Similarity=0.078  Sum_probs=61.1

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      .+.+|+|+|+|.+|..+++.|...|. .++++|.|.-                  .+++.+++.   ...++  ..+.++
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g~-~V~vid~~~~------------------~~~~~~~~~---~~~~~--~~i~gd   57 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPE------------------DDIKQLEQR---LGDNA--DVIPGD   57 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCH------------------HHHHHHHHH---HCTTC--EEEESC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCh------------------HHHHHHHHh---hcCCC--eEEEcC
Confidence            46789999999999999999999996 6889885410                  122222221   11233  334445


Q ss_pred             CCCCcc-hHhhcccccEEEEccCCHHHHHHHHHHHHhc
Q 008516           91 VKDPKF-NVEFFKQFNVVLNGLDNLDARRHVNRLCLAA  127 (563)
Q Consensus        91 i~~~~~-~~~~~~~~dvVi~alDn~~ar~~in~~c~~~  127 (563)
                      .++... ...-+.++|+||.++++.+.-..+...++..
T Consensus        58 ~~~~~~l~~a~i~~ad~vi~~~~~d~~n~~~~~~a~~~   95 (153)
T 1id1_A           58 SNDSSVLKKAGIDRCRAILALSDNDADNAFVVLSAKDM   95 (153)
T ss_dssp             TTSHHHHHHHTTTTCSEEEECSSCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHcChhhCCEEEEecCChHHHHHHHHHHHHH
Confidence            443221 1223678999999999887777777777665

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.36  E-value=0.019  Score=53.20  Aligned_cols=91  Identities=18%  Similarity=0.166  Sum_probs=57.2

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHh-CCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALS-GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~-Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      +.+.+|+|+|+|.+|..+++.|... |. +++++|.|.                   .|++.    +++.  ++.  ...
T Consensus        37 ~~~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~-------------------~~~~~----~~~~--g~~--~~~   88 (183)
T 3c85_A           37 PGHAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIRE-------------------EAAQQ----HRSE--GRN--VIS   88 (183)
T ss_dssp             CTTCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCH-------------------HHHHH----HHHT--TCC--EEE
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCH-------------------HHHHH----HHHC--CCC--EEE
Confidence            4467999999999999999999999 97 688888543                   12222    2222  222  222


Q ss_pred             cCCCCCcchHhh--cccccEEEEccCCHHHHHHHHHHHHhcC
Q 008516           89 ANVKDPKFNVEF--FKQFNVVLNGLDNLDARRHVNRLCLAAD  128 (563)
Q Consensus        89 ~~i~~~~~~~~~--~~~~dvVi~alDn~~ar~~in~~c~~~~  128 (563)
                      .+.++...-.+.  +.++|+||.++.+...-..+-..++..+
T Consensus        89 gd~~~~~~l~~~~~~~~ad~vi~~~~~~~~~~~~~~~~~~~~  130 (183)
T 3c85_A           89 GDATDPDFWERILDTGHVKLVLLAMPHHQGNQTALEQLQRRN  130 (183)
T ss_dssp             CCTTCHHHHHTBCSCCCCCEEEECCSSHHHHHHHHHHHHHTT
T ss_pred             cCCCCHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHHHHC
Confidence            233221111222  5689999999988766555555555544

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=96.32  E-value=0.0079  Score=60.31  Aligned_cols=74  Identities=22%  Similarity=0.386  Sum_probs=52.5

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      +.+++++|+|+||.|..++..|+..|+.+|+|++.+                   ..|++.+++.+..  .  .+.+.. 
T Consensus       118 l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~-------------------~~~a~~la~~~~~--~--~~~~~~-  173 (272)
T 3pwz_A          118 LRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRD-------------------MAKALALRNELDH--S--RLRISR-  173 (272)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSC-------------------HHHHHHHHHHHCC--T--TEEEEC-
T ss_pred             ccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCC-------------------HHHHHHHHHHhcc--C--CeeEee-
Confidence            457899999999999999999999999999997522                   2477777766654  1  233321 


Q ss_pred             CCCCCcchHhhcccccEEEEccCC
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGLDN  113 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~alDn  113 (563)
                       +.  ... .  .++|+||+|+..
T Consensus       174 -~~--~l~-~--~~~DivInaTp~  191 (272)
T 3pwz_A          174 -YE--ALE-G--QSFDIVVNATSA  191 (272)
T ss_dssp             -SG--GGT-T--CCCSEEEECSSG
T ss_pred             -HH--Hhc-c--cCCCEEEECCCC
Confidence             11  011 1  689999999863

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.29  E-value=0.02  Score=54.31  Aligned_cols=97  Identities=18%  Similarity=0.277  Sum_probs=64.1

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (563)
Q Consensus        13 ~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i   91 (563)
                      ++|+|.| .|++|..+++.|...|. ++++++.+.-....+                          .  -.++.+..++
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~--------------------------~--~~~~~~~~Dl   55 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGF-EVTAVVRHPEKIKIE--------------------------N--EHLKVKKADV   55 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTC-EEEEECSCGGGCCCC--------------------------C--TTEEEECCCT
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCC-EEEEEEcCcccchhc--------------------------c--CceEEEEecC
Confidence            6899999 59999999999999994 788887653221111                          1  2345556666


Q ss_pred             CCCcchHhhcccccEEEEccC-----------CHHHHHHHHHHHHhcCC-CEEEecccc
Q 008516           92 KDPKFNVEFFKQFNVVLNGLD-----------NLDARRHVNRLCLAADV-PLVESGTTG  138 (563)
Q Consensus        92 ~~~~~~~~~~~~~dvVi~alD-----------n~~ar~~in~~c~~~~~-pli~~gt~G  138 (563)
                      ++...-.+.++++|+||++..           |...-..+-+.|.+.++ .+|..++.+
T Consensus        56 ~d~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~  114 (227)
T 3dhn_A           56 SSLDEVCEVCKGADAVISAFNPGWNNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGAG  114 (227)
T ss_dssp             TCHHHHHHHHTTCSEEEECCCC------CCSHHHHHHHHHHHHHHHTTCSEEEEECCST
T ss_pred             CCHHHHHHHhcCCCEEEEeCcCCCCChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCChh
Confidence            543333456778888888643           33444556667777775 577776655

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=96.28  E-value=0.0099  Score=59.90  Aligned_cols=74  Identities=24%  Similarity=0.424  Sum_probs=54.1

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      +.+++++|+|+||+|..++..|+..|+.+|+|++.+                   ..|++.+++.+.... .+.+.... 
T Consensus       124 l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~-------------------~~~a~~la~~~~~~~-~~~~~~~~-  182 (281)
T 3o8q_A          124 LKGATILLIGAGGAARGVLKPLLDQQPASITVTNRT-------------------FAKAEQLAELVAAYG-EVKAQAFE-  182 (281)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESS-------------------HHHHHHHHHHHGGGS-CEEEEEGG-
T ss_pred             ccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECC-------------------HHHHHHHHHHhhccC-CeeEeeHH-
Confidence            467899999999999999999999999999998632                   257777777776542 22322211 


Q ss_pred             CCCCCcchHhhcccccEEEEccCC
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGLDN  113 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~alDn  113 (563)
                               +.-.++|+||+++..
T Consensus       183 ---------~l~~~aDiIInaTp~  197 (281)
T 3o8q_A          183 ---------QLKQSYDVIINSTSA  197 (281)
T ss_dssp             ---------GCCSCEEEEEECSCC
T ss_pred             ---------HhcCCCCEEEEcCcC
Confidence                     112689999999864

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.28  E-value=0.018  Score=53.33  Aligned_cols=100  Identities=15%  Similarity=0.135  Sum_probs=60.1

Q ss_pred             CCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           12 GAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        12 ~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      +++|+|.|+ |++|.++++.|+..|. ++++++.+.-....+                         ..+  +++.+..+
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~-------------------------~~~--~~~~~~~D   54 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDSSRLPSE-------------------------GPR--PAHVVVGD   54 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCGGGSCSS-------------------------SCC--CSEEEESC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCC-eEEEEEeChhhcccc-------------------------cCC--ceEEEEec
Confidence            368999997 9999999999999994 788887653211100                         011  23344445


Q ss_pred             CCCCcchHhhcccccEEEEccC----------CHHHHHHHHHHHHhcCC-CEEEeccccc
Q 008516           91 VKDPKFNVEFFKQFNVVLNGLD----------NLDARRHVNRLCLAADV-PLVESGTTGF  139 (563)
Q Consensus        91 i~~~~~~~~~~~~~dvVi~alD----------n~~ar~~in~~c~~~~~-pli~~gt~G~  139 (563)
                      +++...-.+.++++|+||++..          |...-..+-+.|.+.++ .+|..++.+.
T Consensus        55 ~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~~~  114 (206)
T 1hdo_A           55 VLQAADVDKTVAGQDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAFL  114 (206)
T ss_dssp             TTSHHHHHHHHTTCSEEEECCCCTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECCGGG
T ss_pred             CCCHHHHHHHHcCCCEEEECccCCCCCCccchHHHHHHHHHHHHHHhCCCeEEEEeeeee
Confidence            5433222345667788887643          22334445556666664 4666665544

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=96.27  E-value=0.011  Score=60.12  Aligned_cols=42  Identities=19%  Similarity=0.337  Sum_probs=27.1

Q ss_pred             CHHHHHHHcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            3 SERQLEAIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         3 ~~~~q~kL~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ++..++.+..++|+|.|+ |.||..+++.|...|. +++++|..
T Consensus        10 ~~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~   52 (347)
T 4id9_A           10 HSSGLVPRGSHMILVTGSAGRVGRAVVAALRTQGR-TVRGFDLR   52 (347)
T ss_dssp             -----------CEEEETTTSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             CCCcccccCCCEEEEECCCChHHHHHHHHHHhCCC-EEEEEeCC
Confidence            455677889999999997 9999999999999996 67777654

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=96.26  E-value=0.012  Score=63.19  Aligned_cols=91  Identities=12%  Similarity=0.157  Sum_probs=66.6

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      +++++|+|||.|.+|...++.|...|. +++++|.+.-+                     .+.+...+  ..  ++.+..
T Consensus        10 l~~~~vlVvGgG~va~~k~~~L~~~ga-~V~vi~~~~~~---------------------~~~~l~~~--~~--i~~~~~   63 (457)
T 1pjq_A           10 LRDRDCLIVGGGDVAERKARLLLEAGA-RLTVNALTFIP---------------------QFTVWANE--GM--LTLVEG   63 (457)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTB-EEEEEESSCCH---------------------HHHHHHTT--TS--CEEEES
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCcC-EEEEEcCCCCH---------------------HHHHHHhc--CC--EEEEEC
Confidence            678999999999999999999999995 79999964110                     01111111  12  333333


Q ss_pred             CCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCE
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPL  131 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pl  131 (563)
                      .     +..+.+.++|+||.++++.+....+.+.|++.++|+
T Consensus        64 ~-----~~~~~l~~~~lVi~at~~~~~n~~i~~~a~~~~i~v  100 (457)
T 1pjq_A           64 P-----FDETLLDSCWLAIAATDDDTVNQRVSDAAESRRIFC  100 (457)
T ss_dssp             S-----CCGGGGTTCSEEEECCSCHHHHHHHHHHHHHTTCEE
T ss_pred             C-----CCccccCCccEEEEcCCCHHHHHHHHHHHHHcCCEE
Confidence            2     234556799999999999888888999999999985

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=96.24  E-value=0.016  Score=57.27  Aligned_cols=99  Identities=17%  Similarity=0.275  Sum_probs=63.4

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      +.++|+|.|+|.||..+++.|...|. +++.++.+.-   ++                          .+.  ++.+..+
T Consensus         2 ~~~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~~~---~~--------------------------~~~--~~~~~~D   49 (286)
T 3gpi_A            2 SLSKILIAGCGDLGLELARRLTAQGH-EVTGLRRSAQ---PM--------------------------PAG--VQTLIAD   49 (286)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTC-CEEEEECTTS---CC--------------------------CTT--CCEEECC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcc---cc--------------------------ccC--CceEEcc
Confidence            45789999999999999999999997 6777764311   10                          122  3334455


Q ss_pred             CCCCcchHhhccc-ccEEEEcc------------CCHHHHHHHHHHHHhcCC-CEEEecccccee
Q 008516           91 VKDPKFNVEFFKQ-FNVVLNGL------------DNLDARRHVNRLCLAADV-PLVESGTTGFLG  141 (563)
Q Consensus        91 i~~~~~~~~~~~~-~dvVi~al------------Dn~~ar~~in~~c~~~~~-pli~~gt~G~~G  141 (563)
                      +.+...-.+.+++ +|+||.+.            .|...-..+-+.|.+.++ .+|..++.+.+|
T Consensus        50 l~d~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~~SS~~vyg  114 (286)
T 3gpi_A           50 VTRPDTLASIVHLRPEILVYCVAASEYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSSTGVYG  114 (286)
T ss_dssp             TTCGGGCTTGGGGCCSEEEECHHHHHHC-----CCSHHHHHHHHHHTTTSCCCEEEEEEEGGGCC
T ss_pred             CCChHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEcccEEEc
Confidence            5443322345555 99999864            134444555666666664 577777766555

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=96.09  E-value=0.0094  Score=64.22  Aligned_cols=98  Identities=10%  Similarity=0.174  Sum_probs=65.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhC-C--CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSG-F--QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~G-v--g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      +.||+|+|+||+|+.++..|++.+ +  ..|+++|.+..                ++..    .+..     .+++..  
T Consensus        13 ~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~----------------~~~~----~~~~-----g~~~~~--   65 (480)
T 2ph5_A           13 KNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGT----------------KVDV----AQQY-----GVSFKL--   65 (480)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCC----------------SCCH----HHHH-----TCEEEE--
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchh----------------hhhH----Hhhc-----CCceeE--
Confidence            578999999999999999999864 5  58999985442                2111    1111     233333  


Q ss_pred             cCCCCCcc---hHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccc
Q 008516           89 ANVKDPKF---NVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT  137 (563)
Q Consensus        89 ~~i~~~~~---~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~  137 (563)
                      ..++..+.   -..++++.|+|||+...... ..+-+.|++.|+-+++....
T Consensus        66 ~~Vdadnv~~~l~aLl~~~DvVIN~s~~~~~-l~Im~acleaGv~YlDTa~E  116 (480)
T 2ph5_A           66 QQITPQNYLEVIGSTLEENDFLIDVSIGISS-LALIILCNQKGALYINAATE  116 (480)
T ss_dssp             CCCCTTTHHHHTGGGCCTTCEEEECCSSSCH-HHHHHHHHHHTCEEEESSCC
T ss_pred             EeccchhHHHHHHHHhcCCCEEEECCccccC-HHHHHHHHHcCCCEEECCCC
Confidence            23333322   12456667999998765543 45678899999999999864

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=96.04  E-value=0.0094  Score=61.23  Aligned_cols=112  Identities=20%  Similarity=0.271  Sum_probs=66.9

Q ss_pred             HHHHHHHcCCcEEEEC-CcHHHHHHHHHHHHh-CCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516            4 ERQLEAIKGAKVLMVG-AGGIGCELLKTLALS-GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (563)
Q Consensus         4 ~~~q~kL~~~~VlvvG-aGgiG~ellknLal~-Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~   81 (563)
                      +.+...++.++|+|.| .|.||..+++.|... |. +++++|...-....+                          ...
T Consensus        16 ~~~~~~m~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~~~--------------------------~~~   68 (372)
T 3slg_A           16 TQGPGSMKAKKVLILGVNGFIGHHLSKRILETTDW-EVFGMDMQTDRLGDL--------------------------VKH   68 (372)
T ss_dssp             -------CCCEEEEESCSSHHHHHHHHHHHHHSSC-EEEEEESCCTTTGGG--------------------------GGS
T ss_pred             hcCCcccCCCEEEEECCCChHHHHHHHHHHhCCCC-EEEEEeCChhhhhhh--------------------------ccC
Confidence            3445678889999999 599999999999998 65 688877543111100                          001


Q ss_pred             ceEEEeccCCC-CCcchHhhcccccEEEEccC--CHHH---------------HHHHHHHHHhcCCCEEEeccccceee
Q 008516           82 MSITAHHANVK-DPKFNVEFFKQFNVVLNGLD--NLDA---------------RRHVNRLCLAADVPLVESGTTGFLGQ  142 (563)
Q Consensus        82 v~I~~~~~~i~-~~~~~~~~~~~~dvVi~alD--n~~a---------------r~~in~~c~~~~~pli~~gt~G~~G~  142 (563)
                      -+++.+..+++ +...-.+.++++|+||.+..  ....               -..+-+.|.+.+..+|..++.+.+|.
T Consensus        69 ~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~v~~SS~~vyg~  147 (372)
T 3slg_A           69 ERMHFFEGDITINKEWVEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTSEVYGM  147 (372)
T ss_dssp             TTEEEEECCTTTCHHHHHHHHHHCSEEEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHTCEEEEECCGGGGBS
T ss_pred             CCeEEEeCccCCCHHHHHHHhccCCEEEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCcHHHhCC
Confidence            24556666775 43333456778999998432  1111               13345566666678888887766654

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=96.03  E-value=0.0081  Score=60.88  Aligned_cols=76  Identities=16%  Similarity=0.233  Sum_probs=52.0

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      +..++|+|+|+||+|..++..|+..|+.+|+++|.+.                   .|++.+++.+....+  .+...  
T Consensus       139 l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~-------------------~ka~~la~~~~~~~~--~~~~~--  195 (297)
T 2egg_A          139 LDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTV-------------------EKAERLVREGDERRS--AYFSL--  195 (297)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH-------------------HHHHHHHHHSCSSSC--CEECH--
T ss_pred             CCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH-------------------HHHHHHHHHhhhccC--ceeeH--
Confidence            4578999999999999999999999999999986332                   455555544322111  11110  


Q ss_pred             CCCCCcchHhhcccccEEEEccCC
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGLDN  113 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~alDn  113 (563)
                           ....+.+.++|+||+++..
T Consensus       196 -----~~~~~~~~~aDivIn~t~~  214 (297)
T 2egg_A          196 -----AEAETRLAEYDIIINTTSV  214 (297)
T ss_dssp             -----HHHHHTGGGCSEEEECSCT
T ss_pred             -----HHHHhhhccCCEEEECCCC
Confidence                 0113456889999999864

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=96.02  E-value=0.032  Score=56.63  Aligned_cols=114  Identities=17%  Similarity=0.131  Sum_probs=70.0

Q ss_pred             HHHcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC---ce
Q 008516            8 EAIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ---MS   83 (563)
Q Consensus         8 ~kL~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~---v~   83 (563)
                      ..++.++|+|.|+ |.||..+++.|...|. +++.+|...-.               ...    ..+.+....+.   -+
T Consensus        21 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~---------------~~~----~~~~~~~~~~~~~~~~   80 (351)
T 3ruf_A           21 LIFSPKTWLITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFSTG---------------HQY----NLDEVKTLVSTEQWSR   80 (351)
T ss_dssp             HHHSCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSC---------------CHH----HHHHHHHTSCHHHHTT
T ss_pred             CCCCCCeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCCC---------------chh----hhhhhhhccccccCCc
Confidence            4567899999995 9999999999999995 67776632210               001    11122221110   24


Q ss_pred             EEEeccCCCCCcchHhhcccccEEEEccCC-----------------HHHHHHHHHHHHhcCC-CEEEecccccee
Q 008516           84 ITAHHANVKDPKFNVEFFKQFNVVLNGLDN-----------------LDARRHVNRLCLAADV-PLVESGTTGFLG  141 (563)
Q Consensus        84 I~~~~~~i~~~~~~~~~~~~~dvVi~alDn-----------------~~ar~~in~~c~~~~~-pli~~gt~G~~G  141 (563)
                      ++.+..++.+...-.+.++++|+||.+...                 ...-..+-+.|.+.++ .+|..++.+.+|
T Consensus        81 ~~~~~~Dl~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vyg  156 (351)
T 3ruf_A           81 FCFIEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYG  156 (351)
T ss_dssp             EEEEECCTTCHHHHHHHTTTCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGT
T ss_pred             eEEEEccCCCHHHHHHHhcCCCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEecHHhcC
Confidence            566677776544345667899999997532                 1112235556777775 677777766554

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=95.90  E-value=0.046  Score=54.68  Aligned_cols=85  Identities=14%  Similarity=0.223  Sum_probs=63.8

Q ss_pred             HHHHcCCcEEEEC-CcHHHHHHHHHHHHhCCC--eEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCce
Q 008516            7 LEAIKGAKVLMVG-AGGIGCELLKTLALSGFQ--DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMS   83 (563)
Q Consensus         7 q~kL~~~~VlvvG-aGgiG~ellknLal~Gvg--~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~   83 (563)
                      ...|.+++++|.| .||||.++++.|+..|.+  ++.++|.+                   ..+.+.+++.+....|+.+
T Consensus        28 ~~~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~-------------------~~~~~~~~~~l~~~~~~~~   88 (287)
T 3rku_A           28 AERLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARR-------------------LEKLEELKKTIDQEFPNAK   88 (287)
T ss_dssp             HHHHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESC-------------------HHHHHHHHHHHHHHCTTCE
T ss_pred             hhhcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECC-------------------HHHHHHHHHHHHhhCCCCe
Confidence            4578899999998 589999999999999875  77777632                   2456667777777778888


Q ss_pred             EEEeccCCCCCcchHhhc-------ccccEEEEc
Q 008516           84 ITAHHANVKDPKFNVEFF-------KQFNVVLNG  110 (563)
Q Consensus        84 I~~~~~~i~~~~~~~~~~-------~~~dvVi~a  110 (563)
                      +..+..++++...-..++       .+.|+||++
T Consensus        89 ~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnn  122 (287)
T 3rku_A           89 VHVAQLDITQAEKIKPFIENLPQEFKDIDILVNN  122 (287)
T ss_dssp             EEEEECCTTCGGGHHHHHHTSCGGGCSCCEEEEC
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence            988888886543333333       367888884

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=95.87  E-value=0.033  Score=52.64  Aligned_cols=96  Identities=21%  Similarity=0.278  Sum_probs=63.4

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (563)
Q Consensus        13 ~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i   91 (563)
                      ++|+|.| .|++|.++++.|+..|. ++++++.+.-....+                           +  +++.+..++
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~---------------------------~--~~~~~~~D~   50 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDY-QIYAGARKVEQVPQY---------------------------N--NVKAVHFDV   50 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSC-EEEEEESSGGGSCCC---------------------------T--TEEEEECCT
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCccchhhc---------------------------C--CceEEEecc
Confidence            3799999 79999999999999995 788887543111000                           2  355566666


Q ss_pred             CC-CcchHhhcccccEEEEccC---------CHHHHHHHHHHHHhcCC-CEEEecccc
Q 008516           92 KD-PKFNVEFFKQFNVVLNGLD---------NLDARRHVNRLCLAADV-PLVESGTTG  138 (563)
Q Consensus        92 ~~-~~~~~~~~~~~dvVi~alD---------n~~ar~~in~~c~~~~~-pli~~gt~G  138 (563)
                      ++ ...-.+.++++|+||++..         |...-..+-+.|++.++ .+|..++.+
T Consensus        51 ~d~~~~~~~~~~~~d~vi~~ag~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~  108 (219)
T 3dqp_A           51 DWTPEEMAKQLHGMDAIINVSGSGGKSLLKVDLYGAVKLMQAAEKAEVKRFILLSTIF  108 (219)
T ss_dssp             TSCHHHHHTTTTTCSEEEECCCCTTSSCCCCCCHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             cCCHHHHHHHHcCCCEEEECCcCCCCCcEeEeHHHHHHHHHHHHHhCCCEEEEECccc
Confidence            55 3333456788999999653         44445566667777775 466665543

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=95.86  E-value=0.029  Score=49.75  Aligned_cols=87  Identities=15%  Similarity=0.180  Sum_probs=55.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i   91 (563)
                      +.+|+|+|+|.+|..+++.|...|. .++++|.|.                   .+.+.    +++  .++.  .+..+.
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~-------------------~~~~~----~~~--~g~~--~i~gd~   58 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSR-------------------TRVDE----LRE--RGVR--AVLGNA   58 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCH-------------------HHHHH----HHH--TTCE--EEESCT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCH-------------------HHHHH----HHH--cCCC--EEECCC
Confidence            4689999999999999999999997 689988543                   12222    222  2333  344444


Q ss_pred             CCCcc-hHhhcccccEEEEccCCHHHHHHHHHHHHh
Q 008516           92 KDPKF-NVEFFKQFNVVLNGLDNLDARRHVNRLCLA  126 (563)
Q Consensus        92 ~~~~~-~~~~~~~~dvVi~alDn~~ar~~in~~c~~  126 (563)
                      ++... ...-..++|+||.++++...-..+-..++.
T Consensus        59 ~~~~~l~~a~i~~ad~vi~~~~~~~~n~~~~~~a~~   94 (140)
T 3fwz_A           59 ANEEIMQLAHLECAKWLILTIPNGYEAGEIVASARA   94 (140)
T ss_dssp             TSHHHHHHTTGGGCSEEEECCSCHHHHHHHHHHHHH
T ss_pred             CCHHHHHhcCcccCCEEEEECCChHHHHHHHHHHHH
Confidence            32211 111256899999999887655545445444

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=95.77  E-value=0.0092  Score=53.24  Aligned_cols=75  Identities=12%  Similarity=0.216  Sum_probs=51.5

Q ss_pred             HHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516            8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus         8 ~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      .+....+|+|+|+|++|..+++.|...|+. ++++|.+                   ..|++.+++.+.     ..+...
T Consensus        17 ~~~~~~~v~iiG~G~iG~~~a~~l~~~g~~-v~v~~r~-------------------~~~~~~~a~~~~-----~~~~~~   71 (144)
T 3oj0_A           17 RKNGGNKILLVGNGMLASEIAPYFSYPQYK-VTVAGRN-------------------IDHVRAFAEKYE-----YEYVLI   71 (144)
T ss_dssp             HHHCCCEEEEECCSHHHHHHGGGCCTTTCE-EEEEESC-------------------HHHHHHHHHHHT-----CEEEEC
T ss_pred             HhccCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEcCC-------------------HHHHHHHHHHhC-----CceEee
Confidence            344588999999999999999999999987 9988743                   234444444332     222211


Q ss_pred             ccCCCCCcchHhhcccccEEEEccCCH
Q 008516           88 HANVKDPKFNVEFFKQFNVVLNGLDNL  114 (563)
Q Consensus        88 ~~~i~~~~~~~~~~~~~dvVi~alDn~  114 (563)
                      .       ...+.+.++|+||+++...
T Consensus        72 ~-------~~~~~~~~~Divi~at~~~   91 (144)
T 3oj0_A           72 N-------DIDSLIKNNDVIITATSSK   91 (144)
T ss_dssp             S-------CHHHHHHTCSEEEECSCCS
T ss_pred             c-------CHHHHhcCCCEEEEeCCCC
Confidence            1       1245678899999998754

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=95.76  E-value=0.078  Score=53.16  Aligned_cols=81  Identities=17%  Similarity=0.115  Sum_probs=52.8

Q ss_pred             HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe-
Q 008516           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH-   87 (563)
Q Consensus        10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~-   87 (563)
                      +++++|+|.|+ |+||..+++.|+..|. +++++|.+.                   .+.+.+.+.+....+ -+++.+ 
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~-~~~~~~~   67 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARSA-------------------SKLANLQKRWDAKYP-GRFETAV   67 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSH-------------------HHHHHHHHHHHHHST-TTEEEEE
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCc-------------------ccHHHHHHHhhccCC-CceEEEE
Confidence            45688999996 9999999999999996 677765321                   233333344433322 245555 


Q ss_pred             ccCCCCCcchHhhcccccEEEEcc
Q 008516           88 HANVKDPKFNVEFFKQFNVVLNGL  111 (563)
Q Consensus        88 ~~~i~~~~~~~~~~~~~dvVi~al  111 (563)
                      ..++++...-.+.+++.|+||.+.
T Consensus        68 ~~D~~d~~~~~~~~~~~d~vih~A   91 (342)
T 1y1p_A           68 VEDMLKQGAYDEVIKGAAGVAHIA   91 (342)
T ss_dssp             CSCTTSTTTTTTTTTTCSEEEECC
T ss_pred             ecCCcChHHHHHHHcCCCEEEEeC
Confidence            566654433345677899999964

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=95.68  E-value=0.068  Score=51.05  Aligned_cols=76  Identities=16%  Similarity=0.297  Sum_probs=50.5

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCC-eEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQ-DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg-~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      +.+++|+|.| .|+||.++++.|+..|.. +++++|.+.-.   +..           .+           .+  .+..+
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~---~~~-----------~~-----------~~--~~~~~   68 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLT---FDE-----------EA-----------YK--NVNQE   68 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCC---CCS-----------GG-----------GG--GCEEE
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCC---ccc-----------cc-----------cC--CceEE
Confidence            6678999999 699999999999999973 78888754311   100           00           01  23445


Q ss_pred             ccCCCCCcchHhhcccccEEEEccC
Q 008516           88 HANVKDPKFNVEFFKQFNVVLNGLD  112 (563)
Q Consensus        88 ~~~i~~~~~~~~~~~~~dvVi~alD  112 (563)
                      ..++++...-.+.+++.|+||++..
T Consensus        69 ~~D~~d~~~~~~~~~~~d~vi~~ag   93 (242)
T 2bka_A           69 VVDFEKLDDYASAFQGHDVGFCCLG   93 (242)
T ss_dssp             ECCGGGGGGGGGGGSSCSEEEECCC
T ss_pred             ecCcCCHHHHHHHhcCCCEEEECCC
Confidence            5566443333456788999999754

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=95.64  E-value=0.038  Score=55.80  Aligned_cols=37  Identities=24%  Similarity=0.424  Sum_probs=31.5

Q ss_pred             HHHcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            8 EAIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         8 ~kL~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +.+.+++|+|.|+ |+||..+++.|+..|. +++++|.+
T Consensus        16 ~~~~~~~vlVTGasG~iG~~l~~~L~~~g~-~V~~~~r~   53 (330)
T 2pzm_A           16 PRGSHMRILITGGAGCLGSNLIEHWLPQGH-EILVIDNF   53 (330)
T ss_dssp             STTTCCEEEEETTTSHHHHHHHHHHGGGTC-EEEEEECC
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            3567889999996 9999999999999995 78888754

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=95.60  E-value=0.053  Score=54.13  Aligned_cols=98  Identities=12%  Similarity=0.167  Sum_probs=61.9

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        12 ~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      .++|+|.| .|.+|..+++.|...|. +++.++.+.-... +.                             +++.+..+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~-~~-----------------------------~~~~~~~D   50 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGN-TPIILTRSIGNKA-IN-----------------------------DYEYRVSD   50 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCC-----------------------------------CCEEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeCCCCccc-CC-----------------------------ceEEEEcc
Confidence            47899999 59999999999999996 6777775410000 00                             23334444


Q ss_pred             CCCCcchHhhcccccEEEEccC-------------CHHHHHHHHHHHHhcCCC-EEEecccccee
Q 008516           91 VKDPKFNVEFFKQFNVVLNGLD-------------NLDARRHVNRLCLAADVP-LVESGTTGFLG  141 (563)
Q Consensus        91 i~~~~~~~~~~~~~dvVi~alD-------------n~~ar~~in~~c~~~~~p-li~~gt~G~~G  141 (563)
                      ++ ...-.+.++++|+||.+..             |...-..+-+.|.+.+++ +|..++.+.+|
T Consensus        51 l~-~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS~~vyg  114 (311)
T 3m2p_A           51 YT-LEDLINQLNDVDAVVHLAATRGSQGKISEFHDNEILTQNLYDACYENNISNIVYASTISAYS  114 (311)
T ss_dssp             CC-HHHHHHHTTTCSEEEECCCCCCSSSCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCC
T ss_pred             cc-HHHHHHhhcCCCEEEEccccCCCCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhC
Confidence            44 3223445667787777532             233345566677888876 88777766554

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=95.59  E-value=0.049  Score=55.41  Aligned_cols=115  Identities=17%  Similarity=0.089  Sum_probs=67.7

Q ss_pred             HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      +..++|+|.|+ |+||..+++.|+..|. +++++|...-               -...+...+.+.+.... .-+++.+.
T Consensus        25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~---------------~~~~~~~~~~~~~~~~~-~~~~~~~~   87 (352)
T 1sb8_A           25 AQPKVWLITGVAGFIGSNLLETLLKLDQ-KVVGLDNFAT---------------GHQRNLDEVRSLVSEKQ-WSNFKFIQ   87 (352)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSS---------------CCHHHHHHHHHHSCHHH-HTTEEEEE
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCc---------------cchhhHHHHhhhccccc-CCceEEEE
Confidence            67789999997 9999999999999995 6777764211               00112222222111110 12455666


Q ss_pred             cCCCCCcchHhhcccccEEEEccCC---------H--------HHHHHHHHHHHhcCC-CEEEecccccee
Q 008516           89 ANVKDPKFNVEFFKQFNVVLNGLDN---------L--------DARRHVNRLCLAADV-PLVESGTTGFLG  141 (563)
Q Consensus        89 ~~i~~~~~~~~~~~~~dvVi~alDn---------~--------~ar~~in~~c~~~~~-pli~~gt~G~~G  141 (563)
                      .++.+...-.+.++++|+||++...         .        ..-..+-+.|...++ .+|..++.+.+|
T Consensus        88 ~Dl~d~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~  158 (352)
T 1sb8_A           88 GDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYG  158 (352)
T ss_dssp             CCTTSHHHHHHHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGT
T ss_pred             CCCCCHHHHHHHhcCCCEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhcC
Confidence            6775443334567899999996431         1        112344556666665 477776665444

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=95.56  E-value=0.032  Score=57.32  Aligned_cols=77  Identities=16%  Similarity=0.223  Sum_probs=52.2

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC----CCceE
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR----PQMSI   84 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~n----p~v~I   84 (563)
                      +++..||.|+|+|.+|..++..|+..|.++++++|.+.                   .|++..+..+.+.+    ...+|
T Consensus         4 ~m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~-------------------~~~~g~~~dl~~~~~~~~~~~~v   64 (324)
T 3gvi_A            4 SMARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAE-------------------GTPQGKGLDIAESSPVDGFDAKF   64 (324)
T ss_dssp             --CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS-------------------SHHHHHHHHHHHHHHHHTCCCCE
T ss_pred             CCcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCc-------------------hhHHHHHHHHhchhhhcCCCCEE
Confidence            45678999999999999999999999988899988432                   23333333444332    23455


Q ss_pred             EEeccCCCCCcchHhhcccccEEEEccC
Q 008516           85 TAHHANVKDPKFNVEFFKQFNVVLNGLD  112 (563)
Q Consensus        85 ~~~~~~i~~~~~~~~~~~~~dvVi~alD  112 (563)
                      .+..+        .+-++++|+||.+..
T Consensus        65 ~~t~d--------~~a~~~aDiVIiaag   84 (324)
T 3gvi_A           65 TGAND--------YAAIEGADVVIVTAG   84 (324)
T ss_dssp             EEESS--------GGGGTTCSEEEECCS
T ss_pred             EEeCC--------HHHHCCCCEEEEccC
Confidence            54321        245789999999864

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=95.55  E-value=0.011  Score=59.90  Aligned_cols=111  Identities=18%  Similarity=0.168  Sum_probs=64.4

Q ss_pred             HcCCcEEEECC-cHHHHHHHHHHHHhCCC-eEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQ-DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus        10 L~~~~VlvvGa-GgiG~ellknLal~Gvg-~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      +..++|+|.|+ |.||..+++.|...|.. ++..+|...... +.                    +.+..+...-+++.+
T Consensus        22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~-~~--------------------~~l~~~~~~~~~~~~   80 (346)
T 4egb_A           22 SNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSG-NL--------------------NNVKSIQDHPNYYFV   80 (346)
T ss_dssp             --CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTC-CG--------------------GGGTTTTTCTTEEEE
T ss_pred             cCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEecccccc-ch--------------------hhhhhhccCCCeEEE
Confidence            55678999997 99999999999999943 455555432110 00                    001112222345556


Q ss_pred             ccCCCCCcchHhhccc--ccEEEEccCC-----------------HHHHHHHHHHHHhcCCC-EEEecccccee
Q 008516           88 HANVKDPKFNVEFFKQ--FNVVLNGLDN-----------------LDARRHVNRLCLAADVP-LVESGTTGFLG  141 (563)
Q Consensus        88 ~~~i~~~~~~~~~~~~--~dvVi~alDn-----------------~~ar~~in~~c~~~~~p-li~~gt~G~~G  141 (563)
                      ..++++...-.+.+++  +|+||.+...                 ...-..+-+.|...+++ +|..++.+.+|
T Consensus        81 ~~Dl~d~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vy~  154 (346)
T 4egb_A           81 KGEIQNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVSTDEVYG  154 (346)
T ss_dssp             ECCTTCHHHHHHHHHHHTCCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEEEEEEGGGGC
T ss_pred             EcCCCCHHHHHHHHhhcCCCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCchHHhC
Confidence            6666544333445555  8888875321                 11124455667777776 88777766555

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=95.47  E-value=0.079  Score=54.19  Aligned_cols=80  Identities=11%  Similarity=0.163  Sum_probs=56.3

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHh-CCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEE
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALS-GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITA   86 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~-Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~   86 (563)
                      .+++++|+|.| .|++|..+++.|+.. |..+++++|.+.                   .|...+++.+.    ..++..
T Consensus        18 ~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~-------------------~~~~~~~~~~~----~~~v~~   74 (344)
T 2gn4_A           18 MLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDE-------------------LKQSEMAMEFN----DPRMRF   74 (344)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCH-------------------HHHHHHHHHHC----CTTEEE
T ss_pred             hhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECCh-------------------hhHHHHHHHhc----CCCEEE
Confidence            46678999999 599999999999999 987888877432                   23333333332    235666


Q ss_pred             eccCCCCCcchHhhcccccEEEEcc
Q 008516           87 HHANVKDPKFNVEFFKQFNVVLNGL  111 (563)
Q Consensus        87 ~~~~i~~~~~~~~~~~~~dvVi~al  111 (563)
                      +..++.+...-.+.+++.|+||.+.
T Consensus        75 ~~~Dl~d~~~l~~~~~~~D~Vih~A   99 (344)
T 2gn4_A           75 FIGDVRDLERLNYALEGVDICIHAA   99 (344)
T ss_dssp             EECCTTCHHHHHHHTTTCSEEEECC
T ss_pred             EECCCCCHHHHHHHHhcCCEEEECC
Confidence            7777765433346678999999964

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=95.44  E-value=0.025  Score=56.54  Aligned_cols=32  Identities=25%  Similarity=0.561  Sum_probs=28.8

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .+|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~   36 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGF-AVTAYDIN   36 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence            689999999999999999999998 78888744

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=95.43  E-value=0.075  Score=53.98  Aligned_cols=103  Identities=16%  Similarity=0.141  Sum_probs=64.3

Q ss_pred             HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      +..++|+|.|+ |.+|..+++.|...| .++++++.+.               .-...|+..+. .+..  +  .++.+.
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~g-~~V~~l~R~~---------------~~~~~~~~~~~-~l~~--~--~v~~~~   66 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDAH-RPTYILARPG---------------PRSPSKAKIFK-ALED--K--GAIIVY   66 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHTT-CCEEEEECSS---------------CCCHHHHHHHH-HHHH--T--TCEEEE
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCC-CCEEEEECCC---------------CCChhHHHHHH-HHHh--C--CcEEEE
Confidence            45679999998 999999999999999 4677766432               11112333221 2221  2  344556


Q ss_pred             cCCCCCcchHhhcc--cccEEEEccC--CHHHHHHHHHHHHhcC-CCEEE
Q 008516           89 ANVKDPKFNVEFFK--QFNVVLNGLD--NLDARRHVNRLCLAAD-VPLVE  133 (563)
Q Consensus        89 ~~i~~~~~~~~~~~--~~dvVi~alD--n~~ar~~in~~c~~~~-~pli~  133 (563)
                      .++.+...-.+.++  ++|+||.+..  |...-..+-+.|...+ ++.+-
T Consensus        67 ~Dl~d~~~l~~~~~~~~~d~Vi~~a~~~n~~~~~~l~~aa~~~g~v~~~v  116 (346)
T 3i6i_A           67 GLINEQEAMEKILKEHEIDIVVSTVGGESILDQIALVKAMKAVGTIKRFL  116 (346)
T ss_dssp             CCTTCHHHHHHHHHHTTCCEEEECCCGGGGGGHHHHHHHHHHHCCCSEEE
T ss_pred             eecCCHHHHHHHHhhCCCCEEEECCchhhHHHHHHHHHHHHHcCCceEEe
Confidence            66655433456677  9999999754  5555566677777777 65543

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=95.30  E-value=0.079  Score=53.27  Aligned_cols=101  Identities=18%  Similarity=0.228  Sum_probs=60.7

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516           13 AKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (563)
Q Consensus        13 ~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i   91 (563)
                      ++|+|.|+ |.||..+++.|+..|. +++++|.+.-...++.                       .  +  +++.+..++
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~l~-----------------------~--~--~~~~~~~Dl   65 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGH-DLVLIHRPSSQIQRLA-----------------------Y--L--EPECRVAEM   65 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECTTSCGGGGG-----------------------G--G--CCEEEECCT
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC-EEEEEecChHhhhhhc-----------------------c--C--CeEEEEecC
Confidence            58999995 9999999999999995 7888875432111110                       0  1  234445555


Q ss_pred             CCCcchHhhcccccEEEEccCC---------------HHHHHHHHHHHHhcCC-CEEEecccccee
Q 008516           92 KDPKFNVEFFKQFNVVLNGLDN---------------LDARRHVNRLCLAADV-PLVESGTTGFLG  141 (563)
Q Consensus        92 ~~~~~~~~~~~~~dvVi~alDn---------------~~ar~~in~~c~~~~~-pli~~gt~G~~G  141 (563)
                      ++...-.+.+++.|+||.+...               ...-..+-+.|...++ .+|..++.+.+|
T Consensus        66 ~d~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~  131 (342)
T 2x4g_A           66 LDHAGLERALRGLDGVIFSAGYYPSRPRRWQEEVASALGQTNPFYAACLQARVPRILYVGSAYAMP  131 (342)
T ss_dssp             TCHHHHHHHTTTCSEEEEC------------CHHHHHHHHHHHHHHHHHHHTCSCEEEECCGGGSC
T ss_pred             CCHHHHHHHHcCCCEEEECCccCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHhhC
Confidence            4432234556778888885421               1222345556666664 678777766544

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=95.30  E-value=0.067  Score=51.36  Aligned_cols=105  Identities=16%  Similarity=0.127  Sum_probs=64.1

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      .+..++|+|.| .|+||.++++.|+..|--++++++.+.-....+                          . .-.++.+
T Consensus        20 ~~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~--------------------------~-~~~~~~~   72 (236)
T 3qvo_A           20 QGHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKP--------------------------Y-PTNSQII   72 (236)
T ss_dssp             --CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSS--------------------------C-CTTEEEE
T ss_pred             cCcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhccc--------------------------c-cCCcEEE
Confidence            34456899999 699999999999999943788877543211100                          0 0135566


Q ss_pred             ccCCCCCcchHhhcccccEEEEccCCHHH---HHHHHHHHHhcCC-CEEEeccccce
Q 008516           88 HANVKDPKFNVEFFKQFNVVLNGLDNLDA---RRHVNRLCLAADV-PLVESGTTGFL  140 (563)
Q Consensus        88 ~~~i~~~~~~~~~~~~~dvVi~alDn~~a---r~~in~~c~~~~~-pli~~gt~G~~  140 (563)
                      ..++++...-.+.+++.|+||++......   -..+-+.+++.++ .+|..++.+.+
T Consensus        73 ~~Dl~d~~~~~~~~~~~D~vv~~a~~~~~~~~~~~~~~~~~~~~~~~iV~iSS~~~~  129 (236)
T 3qvo_A           73 MGDVLNHAALKQAMQGQDIVYANLTGEDLDIQANSVIAAMKACDVKRLIFVLSLGIY  129 (236)
T ss_dssp             ECCTTCHHHHHHHHTTCSEEEEECCSTTHHHHHHHHHHHHHHTTCCEEEEECCCCC-
T ss_pred             EecCCCHHHHHHHhcCCCEEEEcCCCCchhHHHHHHHHHHHHcCCCEEEEEecceec
Confidence            67776544445678899999986543221   2234445566665 47777665543

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=95.25  E-value=0.079  Score=52.61  Aligned_cols=99  Identities=23%  Similarity=0.315  Sum_probs=59.9

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516           13 AKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (563)
Q Consensus        13 ~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i   91 (563)
                      ++|+|.|+ |.||..+++.|+..|. +++++|...-...    ..                     ..+  .++.+..++
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~----~~---------------------~~~--~~~~~~~Dl   52 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGY-EVVVVDNLSSGRR----EF---------------------VNP--SAELHVRDL   52 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCCSSCCG----GG---------------------SCT--TSEEECCCT
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCC-EEEEEeCCCCCch----hh---------------------cCC--CceEEECcc
Confidence            47999997 9999999999999996 6777764321100    00                     022  234445555


Q ss_pred             CCCcchHhhcccccEEEEccC-----------------CHHHHHHHHHHHHhcCC-CEEEecccccee
Q 008516           92 KDPKFNVEFFKQFNVVLNGLD-----------------NLDARRHVNRLCLAADV-PLVESGTTGFLG  141 (563)
Q Consensus        92 ~~~~~~~~~~~~~dvVi~alD-----------------n~~ar~~in~~c~~~~~-pli~~gt~G~~G  141 (563)
                      .+.. -.+.++. |+||++..                 |...-..+-+.|.+.++ .+|..++.+.+|
T Consensus        53 ~d~~-~~~~~~~-d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~vyg  118 (312)
T 3ko8_A           53 KDYS-WGAGIKG-DVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTVYG  118 (312)
T ss_dssp             TSTT-TTTTCCC-SEEEECCSSCSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGC
T ss_pred             ccHH-HHhhcCC-CEEEECCCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHhC
Confidence            4433 3344555 99988543                 22222345566666665 577777666554

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=95.23  E-value=0.03  Score=60.39  Aligned_cols=100  Identities=16%  Similarity=0.170  Sum_probs=61.4

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      .+..++|+|+|+|++|..+++.|+..|-.+++++|.+                   ..|++.+++.     +.+..  ..
T Consensus        20 ~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~-------------------~~ka~~la~~-----~~~~~--~~   73 (467)
T 2axq_A           20 RHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRT-------------------LANAQALAKP-----SGSKA--IS   73 (467)
T ss_dssp             ---CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESS-------------------HHHHHHHHGG-----GTCEE--EE
T ss_pred             CCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECC-------------------HHHHHHHHHh-----cCCcE--EE
Confidence            4667899999999999999999999843378887633                   1344333321     22322  22


Q ss_pred             cCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEec
Q 008516           89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG  135 (563)
Q Consensus        89 ~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~g  135 (563)
                      .++.+...-.+.++++|+||+++.... ...+.+.|...++.+++..
T Consensus        74 ~D~~d~~~l~~~l~~~DvVIn~tp~~~-~~~v~~a~l~~g~~vvd~~  119 (467)
T 2axq_A           74 LDVTDDSALDKVLADNDVVISLIPYTF-HPNVVKSAIRTKTDVVTSS  119 (467)
T ss_dssp             CCTTCHHHHHHHHHTSSEEEECSCGGG-HHHHHHHHHHHTCEEEECS
T ss_pred             EecCCHHHHHHHHcCCCEEEECCchhh-hHHHHHHHHhcCCEEEEee
Confidence            233221112345678999999987532 2335667778888777753

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=95.23  E-value=0.062  Score=50.80  Aligned_cols=100  Identities=15%  Similarity=0.206  Sum_probs=61.3

Q ss_pred             CcEEEEC-CcHHHHHHHHHHH-HhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           13 AKVLMVG-AGGIGCELLKTLA-LSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        13 ~~VlvvG-aGgiG~ellknLa-l~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      ++|+|.| .|++|.++++.|+ ..|. ++++++.+.-                  .+.+.    +....+  +++.+..+
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~-~V~~~~r~~~------------------~~~~~----~~~~~~--~~~~~~~D   60 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDM-HITLYGRQLK------------------TRIPP----EIIDHE--RVTVIEGS   60 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCC-EEEEEESSHH------------------HHSCH----HHHTST--TEEEEECC
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCc-eEEEEecCcc------------------ccchh----hccCCC--ceEEEECC
Confidence            3599999 5999999999999 8897 6887764310                  01111    111222  45666677


Q ss_pred             CCCCcchHhhcccccEEEEccC--CHHHHHHHHHHHHhcCC-CEEEecccc
Q 008516           91 VKDPKFNVEFFKQFNVVLNGLD--NLDARRHVNRLCLAADV-PLVESGTTG  138 (563)
Q Consensus        91 i~~~~~~~~~~~~~dvVi~alD--n~~ar~~in~~c~~~~~-pli~~gt~G  138 (563)
                      +++...-.+.+++.|+||++..  |...+ .+-+.+.+.+. .+|..++.+
T Consensus        61 ~~d~~~~~~~~~~~d~vv~~ag~~n~~~~-~~~~~~~~~~~~~iv~iSs~~  110 (221)
T 3r6d_A           61 FQNPGXLEQAVTNAEVVFVGAMESGSDMA-SIVKALSRXNIRRVIGVSMAG  110 (221)
T ss_dssp             TTCHHHHHHHHTTCSEEEESCCCCHHHHH-HHHHHHHHTTCCEEEEEEETT
T ss_pred             CCCHHHHHHHHcCCCEEEEcCCCCChhHH-HHHHHHHhcCCCeEEEEeece
Confidence            7654434567789999999764  34433 33444555554 456555444

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=95.23  E-value=0.061  Score=52.80  Aligned_cols=93  Identities=15%  Similarity=0.267  Sum_probs=58.6

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      +...+|.|||+|.+|..+++.|+..|...++++|.+.                   .+++.+++.+     ++.+  . .
T Consensus         8 ~~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~-------------------~~~~~~~~~~-----g~~~--~-~   60 (266)
T 3d1l_A            8 IEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTE-------------------ESARELAQKV-----EAEY--T-T   60 (266)
T ss_dssp             GGGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSH-------------------HHHHHHHHHT-----TCEE--E-S
T ss_pred             CCCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCH-------------------HHHHHHHHHc-----CCce--e-C
Confidence            4457999999999999999999999976577776321                   2333332221     1222  1 1


Q ss_pred             CCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHh--cCCCEEEec
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA--ADVPLVESG  135 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~--~~~pli~~g  135 (563)
                      +      ..+.++++|+|+.++-+...+..+.++...  .+..+++..
T Consensus        61 ~------~~~~~~~~Dvvi~av~~~~~~~v~~~l~~~~~~~~ivv~~s  102 (266)
T 3d1l_A           61 D------LAEVNPYAKLYIVSLKDSAFAELLQGIVEGKREEALMVHTA  102 (266)
T ss_dssp             C------GGGSCSCCSEEEECCCHHHHHHHHHHHHTTCCTTCEEEECC
T ss_pred             C------HHHHhcCCCEEEEecCHHHHHHHHHHHHhhcCCCcEEEECC
Confidence            1      134567899999999876665555554322  344566553

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=95.16  E-value=0.052  Score=54.06  Aligned_cols=34  Identities=24%  Similarity=0.490  Sum_probs=31.0

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +..++|+|+|+|++|..+++.|...|+ +++++|.
T Consensus       127 ~~~~~v~iiGaG~~g~aia~~L~~~g~-~V~v~~r  160 (275)
T 2hk9_A          127 VKEKSILVLGAGGASRAVIYALVKEGA-KVFLWNR  160 (275)
T ss_dssp             GGGSEEEEECCSHHHHHHHHHHHHHTC-EEEEECS
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHcCC-EEEEEEC
Confidence            567899999999999999999999998 8998864

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=95.12  E-value=0.024  Score=56.72  Aligned_cols=80  Identities=24%  Similarity=0.276  Sum_probs=53.1

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      +++++++|.| +||+|..+++.|+..|.. ++++|.+                   ..|++.+++.+... +.+.+  ..
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~-V~i~~R~-------------------~~~~~~l~~~~~~~-~~~~~--~~  173 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGAE-VVLCGRK-------------------LDKAQAAADSVNKR-FKVNV--TA  173 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESS-------------------HHHHHHHHHHHHHH-HTCCC--EE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCE-EEEEECC-------------------HHHHHHHHHHHHhc-CCcEE--EE
Confidence            5678999999 999999999999999985 8887632                   13566555555432 12222  22


Q ss_pred             cCCCCCcchHhhcccccEEEEccC
Q 008516           89 ANVKDPKFNVEFFKQFNVVLNGLD  112 (563)
Q Consensus        89 ~~i~~~~~~~~~~~~~dvVi~alD  112 (563)
                      .++++...-.+.++++|+||++..
T Consensus       174 ~D~~~~~~~~~~~~~~DvlVn~ag  197 (287)
T 1lu9_A          174 AETADDASRAEAVKGAHFVFTAGA  197 (287)
T ss_dssp             EECCSHHHHHHHTTTCSEEEECCC
T ss_pred             ecCCCHHHHHHHHHhCCEEEECCC
Confidence            233322222356778899999874

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=95.12  E-value=0.058  Score=53.52  Aligned_cols=65  Identities=22%  Similarity=0.275  Sum_probs=42.0

Q ss_pred             HHHHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEE
Q 008516            7 LEAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSIT   85 (563)
Q Consensus         7 q~kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~   85 (563)
                      ...+++++|+|.| .||||.++++.|+..|. ++.++|.+                   ..|.+.+.+.+++..+ .++.
T Consensus         7 ~~~~~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~-------------------~~~~~~~~~~l~~~~~-~~~~   65 (311)
T 3o26_A            7 NTVTKRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRD-------------------VTKGHEAVEKLKNSNH-ENVV   65 (311)
T ss_dssp             -----CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHTTTC-CSEE
T ss_pred             CccCCCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHhcCC-CceE
Confidence            3456778889988 58999999999999997 68877643                   2455555666655543 2455


Q ss_pred             EeccCCC
Q 008516           86 AHHANVK   92 (563)
Q Consensus        86 ~~~~~i~   92 (563)
                      .+..+++
T Consensus        66 ~~~~Dl~   72 (311)
T 3o26_A           66 FHQLDVT   72 (311)
T ss_dssp             EEECCTT
T ss_pred             EEEccCC
Confidence            5555554

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=95.10  E-value=0.05  Score=54.42  Aligned_cols=81  Identities=12%  Similarity=0.202  Sum_probs=53.8

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCC--eEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQ--DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg--~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      +..+|.|||+|.+|..+++.|+..|+.  +++++|.+.                   .|++.+++.   +  ++++  ..
T Consensus         2 ~~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~-------------------~~~~~l~~~---~--gi~~--~~   55 (280)
T 3tri_A            2 NTSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSL-------------------DKLDFFKEK---C--GVHT--TQ   55 (280)
T ss_dssp             CCSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSS-------------------HHHHHHHHT---T--CCEE--ES
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCH-------------------HHHHHHHHH---c--CCEE--eC
Confidence            457899999999999999999999962  688876322                   233333221   1  2222  11


Q ss_pred             cCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHH
Q 008516           89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLC  124 (563)
Q Consensus        89 ~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c  124 (563)
                             ...+.+++.|+||.|+.....+..+.++.
T Consensus        56 -------~~~~~~~~aDvVilav~p~~~~~vl~~l~   84 (280)
T 3tri_A           56 -------DNRQGALNADVVVLAVKPHQIKMVCEELK   84 (280)
T ss_dssp             -------CHHHHHSSCSEEEECSCGGGHHHHHHHHH
T ss_pred             -------ChHHHHhcCCeEEEEeCHHHHHHHHHHHH
Confidence                   13456789999999996655566565554

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=95.05  E-value=0.051  Score=55.68  Aligned_cols=76  Identities=17%  Similarity=0.270  Sum_probs=52.3

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC----CCceEE
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR----PQMSIT   85 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~n----p~v~I~   85 (563)
                      +...||.|+|+|.+|..++..|+..|+++++++|.+.                   .|++..+..+.+..    ..++|.
T Consensus         3 m~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~-------------------~~~~g~a~dL~~~~~~~~~~~~v~   63 (321)
T 3p7m_A            3 MARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQ-------------------GMPNGKALDLLQTCPIEGVDFKVR   63 (321)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS-------------------SHHHHHHHHHHTTHHHHTCCCCEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCh-------------------HHHHHHHHHHHhhhhhcCCCcEEE
Confidence            4467999999999999999999999988899988432                   23333334444332    244555


Q ss_pred             EeccCCCCCcchHhhcccccEEEEccC
Q 008516           86 AHHANVKDPKFNVEFFKQFNVVLNGLD  112 (563)
Q Consensus        86 ~~~~~i~~~~~~~~~~~~~dvVi~alD  112 (563)
                      +..        +.+-++++|+||.+..
T Consensus        64 ~t~--------d~~a~~~aDvVIi~ag   82 (321)
T 3p7m_A           64 GTN--------DYKDLENSDVVIVTAG   82 (321)
T ss_dssp             EES--------CGGGGTTCSEEEECCS
T ss_pred             EcC--------CHHHHCCCCEEEEcCC
Confidence            422        1245789999999853

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=95.05  E-value=0.082  Score=51.85  Aligned_cols=98  Identities=15%  Similarity=0.068  Sum_probs=62.0

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      +.++|+|.|+|.+|..+++.|...|. +++.++.+.                   .+...+    ..  +  .++.+..+
T Consensus         4 m~~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~~-------------------~~~~~~----~~--~--~~~~~~~D   55 (286)
T 3ius_A            4 MTGTLLSFGHGYTARVLSRALAPQGW-RIIGTSRNP-------------------DQMEAI----RA--S--GAEPLLWP   55 (286)
T ss_dssp             -CCEEEEETCCHHHHHHHHHHGGGTC-EEEEEESCG-------------------GGHHHH----HH--T--TEEEEESS
T ss_pred             CcCcEEEECCcHHHHHHHHHHHHCCC-EEEEEEcCh-------------------hhhhhH----hh--C--CCeEEEec
Confidence            34799999999999999999999996 577765321                   122111    11  2  35556666


Q ss_pred             CCCCcchHhhcccccEEEEccCC----HHHHHHHHHHHHh--cC-CCEEEecccccee
Q 008516           91 VKDPKFNVEFFKQFNVVLNGLDN----LDARRHVNRLCLA--AD-VPLVESGTTGFLG  141 (563)
Q Consensus        91 i~~~~~~~~~~~~~dvVi~alDn----~~ar~~in~~c~~--~~-~pli~~gt~G~~G  141 (563)
                      +.+.    + +.++|+||.+...    ......+-+.|..  .+ ..+|..++.+.+|
T Consensus        56 ~~d~----~-~~~~d~vi~~a~~~~~~~~~~~~l~~a~~~~~~~~~~~v~~Ss~~vyg  108 (286)
T 3ius_A           56 GEEP----S-LDGVTHLLISTAPDSGGDPVLAALGDQIAARAAQFRWVGYLSTTAVYG  108 (286)
T ss_dssp             SSCC----C-CTTCCEEEECCCCBTTBCHHHHHHHHHHHHTGGGCSEEEEEEEGGGGC
T ss_pred             cccc----c-cCCCCEEEECCCccccccHHHHHHHHHHHhhcCCceEEEEeecceecC
Confidence            6542    2 7899999996521    1233444555665  44 4577777777665

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=95.04  E-value=0.081  Score=50.39  Aligned_cols=37  Identities=14%  Similarity=0.398  Sum_probs=28.8

Q ss_pred             HHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         8 ~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      -++...+|.|+|+|.+|+.+++.|+..|. +++++|.+
T Consensus        15 ~~~~~~~I~iiG~G~mG~~la~~l~~~g~-~V~~~~~~   51 (209)
T 2raf_A           15 LYFQGMEITIFGKGNMGQAIGHNFEIAGH-EVTYYGSK   51 (209)
T ss_dssp             -----CEEEEECCSHHHHHHHHHHHHTTC-EEEEECTT
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            35778899999999999999999999996 68888743

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=95.04  E-value=0.028  Score=53.09  Aligned_cols=95  Identities=18%  Similarity=0.182  Sum_probs=58.3

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516           13 AKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (563)
Q Consensus        13 ~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i   91 (563)
                      +||+|.|+ |+||.++++.|+..|. ++++++.+.                   .+..    .+  ..+.  ++.+..++
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~-------------------~~~~----~~--~~~~--~~~~~~D~   52 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGH-EVLAVVRDP-------------------QKAA----DR--LGAT--VATLVKEP   52 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHH----HH--TCTT--SEEEECCG
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCC-EEEEEEecc-------------------cccc----cc--cCCC--ceEEeccc
Confidence            37999997 9999999999999996 677765321                   1111    11  1123  44455666


Q ss_pred             CCCcchHhhcccccEEEEccCC----------HHHHHHHHHHHHhcCCCEEEeccc
Q 008516           92 KDPKFNVEFFKQFNVVLNGLDN----------LDARRHVNRLCLAADVPLVESGTT  137 (563)
Q Consensus        92 ~~~~~~~~~~~~~dvVi~alDn----------~~ar~~in~~c~~~~~pli~~gt~  137 (563)
                      ++...  +.+.++|+||++...          ...-..+-+.|.+.+..+|..++.
T Consensus        53 ~d~~~--~~~~~~d~vi~~ag~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~  106 (224)
T 3h2s_A           53 LVLTE--ADLDSVDAVVDALSVPWGSGRGYLHLDFATHLVSLLRNSDTLAVFILGS  106 (224)
T ss_dssp             GGCCH--HHHTTCSEEEECCCCCTTSSCTHHHHHHHHHHHHTCTTCCCEEEEECCG
T ss_pred             ccccH--hhcccCCEEEECCccCCCcchhhHHHHHHHHHHHHHHHcCCcEEEEecc
Confidence            44332  677899999997532          223333444455555566666554

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=95.03  E-value=0.05  Score=53.05  Aligned_cols=65  Identities=15%  Similarity=0.325  Sum_probs=46.6

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC-ceEEE
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ-MSITA   86 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~-v~I~~   86 (563)
                      .+++++++|.| .||||.++++.|+..|. ++.++|.+                   ..+.+.+++.+.+.++. .++..
T Consensus         4 ~~~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~   63 (250)
T 3nyw_A            4 EKQKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARS-------------------KQNLEKVHDEIMRSNKHVQEPIV   63 (250)
T ss_dssp             -CCCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESC-------------------HHHHHHHHHHHHHHCTTSCCCEE
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHHhccccCcceE
Confidence            35678899998 58999999999999998 68887643                   24556666666666554 45666


Q ss_pred             eccCCCC
Q 008516           87 HHANVKD   93 (563)
Q Consensus        87 ~~~~i~~   93 (563)
                      +..++++
T Consensus        64 ~~~Dv~~   70 (250)
T 3nyw_A           64 LPLDITD   70 (250)
T ss_dssp             EECCTTC
T ss_pred             EeccCCC
Confidence            6666654

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=95.02  E-value=0.08  Score=53.68  Aligned_cols=35  Identities=20%  Similarity=0.290  Sum_probs=30.4

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ...+|.|||+|.+|..++++|+..|...++++|.+
T Consensus        23 ~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~   57 (312)
T 3qsg_A           23 NAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA   57 (312)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence            34689999999999999999999998789998854

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=94.98  E-value=0.045  Score=54.98  Aligned_cols=37  Identities=22%  Similarity=0.302  Sum_probs=33.9

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~   46 (563)
                      +.+++++|+|+||.|..++..|+..|++++++++.+.
T Consensus       115 l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  151 (277)
T 3don_A          115 IEDAYILILGAGGASKGIANELYKIVRPTLTVANRTM  151 (277)
T ss_dssp             GGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCG
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            6788999999999999999999999999999987654

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=94.95  E-value=0.071  Score=54.78  Aligned_cols=75  Identities=25%  Similarity=0.327  Sum_probs=53.8

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCC-CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC---CceEEE
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP---QMSITA   86 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gv-g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np---~v~I~~   86 (563)
                      ...||.|+|+|.+|+.++..|+..|+ ++++++|.                   ...|++..+.-+.+..|   .+++..
T Consensus         8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~-------------------~~~k~~g~a~DL~~~~~~~~~~~i~~   68 (326)
T 3vku_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDI-------------------FKDKTKGDAIDLEDALPFTSPKKIYS   68 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS-------------------CHHHHHHHHHHHHTTGGGSCCCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeC-------------------ChHHHHHHHhhHhhhhhhcCCcEEEE
Confidence            45789999999999999999999998 58999884                   23466665566665543   333331


Q ss_pred             eccCCCCCcchHhhcccccEEEEccCC
Q 008516           87 HHANVKDPKFNVEFFKQFNVVLNGLDN  113 (563)
Q Consensus        87 ~~~~i~~~~~~~~~~~~~dvVi~alDn  113 (563)
                        +       +.+-++++|+||.+...
T Consensus        69 --~-------~~~a~~~aDiVvi~ag~   86 (326)
T 3vku_A           69 --A-------EYSDAKDADLVVITAGA   86 (326)
T ss_dssp             --C-------CGGGGTTCSEEEECCCC
T ss_pred             --C-------cHHHhcCCCEEEECCCC
Confidence              1       12458899999997653

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=94.93  E-value=0.11  Score=52.24  Aligned_cols=34  Identities=29%  Similarity=0.471  Sum_probs=27.9

Q ss_pred             HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      |++++|+|.|+ |+||..+++.|+..|. +++++|.
T Consensus         1 m~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r   35 (345)
T 2z1m_A            1 MSGKRALITGIRGQDGAYLAKLLLEKGY-EVYGADR   35 (345)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEC
Confidence            35678999996 9999999999999995 6777764

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=94.93  E-value=0.042  Score=52.94  Aligned_cols=89  Identities=15%  Similarity=0.072  Sum_probs=59.1

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      .+.+|+|+|+|.+|..+++.|...|.  ++++|.|.                   .+++    .+.   ++  +..+..+
T Consensus         8 ~~~~viI~G~G~~G~~la~~L~~~g~--v~vid~~~-------------------~~~~----~~~---~~--~~~i~gd   57 (234)
T 2aef_A            8 KSRHVVICGWSESTLECLRELRGSEV--FVLAEDEN-------------------VRKK----VLR---SG--ANFVHGD   57 (234)
T ss_dssp             --CEEEEESCCHHHHHHHHHSTTSEE--EEEESCGG-------------------GHHH----HHH---TT--CEEEESC
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCe--EEEEECCH-------------------HHHH----HHh---cC--CeEEEcC
Confidence            35689999999999999999998887  88887432                   1111    122   23  3344555


Q ss_pred             CCCCcc-hHhhcccccEEEEccCCHHHHHHHHHHHHhcCC
Q 008516           91 VKDPKF-NVEFFKQFNVVLNGLDNLDARRHVNRLCLAADV  129 (563)
Q Consensus        91 i~~~~~-~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~  129 (563)
                      .++... ...-++++|.||.++++.+.-..+...++..+.
T Consensus        58 ~~~~~~l~~a~i~~ad~vi~~~~~d~~n~~~~~~a~~~~~   97 (234)
T 2aef_A           58 PTRVSDLEKANVRGARAVIVDLESDSETIHCILGIRKIDE   97 (234)
T ss_dssp             TTCHHHHHHTTCTTCSEEEECCSCHHHHHHHHHHHHHHCS
T ss_pred             CCCHHHHHhcCcchhcEEEEcCCCcHHHHHHHHHHHHHCC
Confidence            543221 112367899999999987777777777777654

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=94.92  E-value=0.18  Score=50.90  Aligned_cols=111  Identities=14%  Similarity=0.214  Sum_probs=60.9

Q ss_pred             CHHHHHHHcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516            3 SERQLEAIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (563)
Q Consensus         3 ~~~~q~kL~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~   81 (563)
                      ++.....+..++|+|.|+ |.||..+++.|...|. +++++|...-.   ..+.                   +..+...
T Consensus        18 ~~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~---~~~~-------------------~~~~~~~   74 (343)
T 2b69_A           18 YFQGHMEKDRKRILITGGAGFVGSHLTDKLMMDGH-EVTVVDNFFTG---RKRN-------------------VEHWIGH   74 (343)
T ss_dssp             ---------CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSC---CGGG-------------------TGGGTTC
T ss_pred             ccccccccCCCEEEEEcCccHHHHHHHHHHHHCCC-EEEEEeCCCcc---chhh-------------------hhhhccC
Confidence            445556778899999997 9999999999999995 67777643211   0000                   0011111


Q ss_pred             ceEEEeccCCCCCcchHhhcccccEEEEccCC---------H--------HHHHHHHHHHHhcCCCEEEecccccee
Q 008516           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDN---------L--------DARRHVNRLCLAADVPLVESGTTGFLG  141 (563)
Q Consensus        82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn---------~--------~ar~~in~~c~~~~~pli~~gt~G~~G  141 (563)
                      .+++....++.+.     .+.++|+||.+...         .        ..-..+-+.|...++.+|..++.+.+|
T Consensus        75 ~~~~~~~~D~~~~-----~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~v~g  146 (343)
T 2b69_A           75 ENFELINHDVVEP-----LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYG  146 (343)
T ss_dssp             TTEEEEECCTTSC-----CCCCCSEEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEGGGGB
T ss_pred             CceEEEeCccCCh-----hhcCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCcEEEECcHHHhC
Confidence            2344455555332     25678999986421         1        112334456666677788777666554

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=94.82  E-value=0.11  Score=52.89  Aligned_cols=118  Identities=15%  Similarity=0.245  Sum_probs=67.2

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHH--hCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEE
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLAL--SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITA   86 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal--~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~   86 (563)
                      +..++|+|.| .|+||..+++.|+.  .|. +++++|...-... ....   ..+.+++..         .. +...+..
T Consensus         8 ~~~~~vlVTGatG~IG~~l~~~L~~~~~g~-~V~~~~r~~~~~~-~~~~---~~~~~~~~~---------~~-~~~~~~~   72 (362)
T 3sxp_A            8 LENQTILITGGAGFVGSNLAFHFQENHPKA-KVVVLDKFRSNTL-FSNN---RPSSLGHFK---------NL-IGFKGEV   72 (362)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHCTTS-EEEEEECCCCC-----------CCCCCCGG---------GG-TTCCSEE
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHhhCCCC-eEEEEECCCcccc-cccc---chhhhhhhh---------hc-cccCceE
Confidence            5678999997 59999999999999  675 6777775332000 0000   001111110         11 1223455


Q ss_pred             eccCCCCCcchHhh-cccccEEEEccC-------C--------HHHHHHHHHHHHhcCCCEEEeccccceee
Q 008516           87 HHANVKDPKFNVEF-FKQFNVVLNGLD-------N--------LDARRHVNRLCLAADVPLVESGTTGFLGQ  142 (563)
Q Consensus        87 ~~~~i~~~~~~~~~-~~~~dvVi~alD-------n--------~~ar~~in~~c~~~~~pli~~gt~G~~G~  142 (563)
                      +..++++...-... ..++|+||++..       +        ...-..+-+.|.+.+.++|..++.+.+|.
T Consensus        73 ~~~Dl~d~~~~~~~~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~V~~SS~~vyg~  144 (362)
T 3sxp_A           73 IAADINNPLDLRRLEKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKKAKVIYASSAGVYGN  144 (362)
T ss_dssp             EECCTTCHHHHHHHTTSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEGGGGCS
T ss_pred             EECCCCCHHHHHHhhccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCcHHHhCC
Confidence            56666543222333 678888888532       1        12224556677777777888887766653

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=94.77  E-value=0.041  Score=58.99  Aligned_cols=34  Identities=26%  Similarity=0.339  Sum_probs=29.4

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ..++|+|+|+|++|..+++.|+..|. +++++|.+
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L~~~G~-~V~v~~R~   35 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRT   35 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcC-EEEEEECC
Confidence            45789999999999999999999995 58888744

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=94.76  E-value=0.11  Score=51.20  Aligned_cols=82  Identities=12%  Similarity=0.225  Sum_probs=53.0

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      .+++++++|.| .||||.++++.|+..|. ++.++|.+.                   .+.+.+++.+++.....++..+
T Consensus        29 ~l~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~   88 (279)
T 1xg5_A           29 RWRDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTV-------------------GNIEELAAECKSAGYPGTLIPY   88 (279)
T ss_dssp             GGTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHTTCSSEEEEE
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCh-------------------HHHHHHHHHHHhcCCCceEEEE
Confidence            46778899997 68999999999999996 577776431                   2344455555555444566666


Q ss_pred             ccCCCCCcchHhhc-------ccccEEEEc
Q 008516           88 HANVKDPKFNVEFF-------KQFNVVLNG  110 (563)
Q Consensus        88 ~~~i~~~~~~~~~~-------~~~dvVi~a  110 (563)
                      ..++++...-..++       .+.|+||++
T Consensus        89 ~~Dl~~~~~v~~~~~~~~~~~g~iD~vi~~  118 (279)
T 1xg5_A           89 RCDLSNEEDILSMFSAIRSQHSGVDICINN  118 (279)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHCCCSEEEEC
T ss_pred             EecCCCHHHHHHHHHHHHHhCCCCCEEEEC
Confidence            66665432212222       356777774

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=94.73  E-value=0.056  Score=52.87  Aligned_cols=64  Identities=28%  Similarity=0.411  Sum_probs=45.2

Q ss_pred             HHcCCcEEEECC-c-HHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEE
Q 008516            9 AIKGAKVLMVGA-G-GIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITA   86 (563)
Q Consensus         9 kL~~~~VlvvGa-G-giG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~   86 (563)
                      .+++++++|.|+ | |||.++++.|+..|. ++.++|.+                   ..+.+.+.+.+++.. ..++..
T Consensus        19 ~l~~k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~-------------------~~~~~~~~~~l~~~~-~~~~~~   77 (266)
T 3o38_A           19 LLKGKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYH-------------------ERRLGETRDQLADLG-LGRVEA   77 (266)
T ss_dssp             TTTTCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHTTC-SSCEEE
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCC-------------------HHHHHHHHHHHHhcC-CCceEE
Confidence            367889999998 7 899999999999997 57777643                   234444555554443 346666


Q ss_pred             eccCCCC
Q 008516           87 HHANVKD   93 (563)
Q Consensus        87 ~~~~i~~   93 (563)
                      +..++++
T Consensus        78 ~~~Dl~~   84 (266)
T 3o38_A           78 VVCDVTS   84 (266)
T ss_dssp             EECCTTC
T ss_pred             EEeCCCC
Confidence            7767654

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=94.73  E-value=0.091  Score=51.46  Aligned_cols=82  Identities=21%  Similarity=0.359  Sum_probs=54.1

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      .+.+++++|.| .||||.++++.|+..|. ++.++|.+.                   .+.+.+++.+.+..+..++..+
T Consensus        10 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~   69 (267)
T 1iy8_A           10 RFTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSS-------------------EGLEASKAAVLETAPDAEVLTT   69 (267)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHHCTTCCEEEE
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhhcCCceEEEE
Confidence            46778899998 68999999999999996 577776321                   2344455556555555567777


Q ss_pred             ccCCCCCcchHhhc-------ccccEEEEc
Q 008516           88 HANVKDPKFNVEFF-------KQFNVVLNG  110 (563)
Q Consensus        88 ~~~i~~~~~~~~~~-------~~~dvVi~a  110 (563)
                      ..++++...-..++       .+.|+||++
T Consensus        70 ~~D~~~~~~v~~~~~~~~~~~g~id~lv~n   99 (267)
T 1iy8_A           70 VADVSDEAQVEAYVTATTERFGRIDGFFNN   99 (267)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHSCCSEEEEC
T ss_pred             EccCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            77775432222222       356777774

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=94.72  E-value=0.12  Score=51.39  Aligned_cols=99  Identities=21%  Similarity=0.238  Sum_probs=58.3

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516           13 AKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (563)
Q Consensus        13 ~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i   91 (563)
                      ++|+|.|+ |+||..+++.|...|  ++.+++...-.  ..  ..                     ..+  .++.+..++
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g--~~v~~~~~~~~--~~--~~---------------------~~~--~~~~~~~Dl   52 (313)
T 3ehe_A            2 SLIVVTGGAGFIGSHVVDKLSESN--EIVVIDNLSSG--NE--EF---------------------VNE--AARLVKADL   52 (313)
T ss_dssp             -CEEEETTTSHHHHHHHHHHTTTS--CEEEECCCSSC--CG--GG---------------------SCT--TEEEECCCT
T ss_pred             CEEEEECCCchHHHHHHHHHHhCC--CEEEEEcCCCC--Ch--hh---------------------cCC--CcEEEECcC
Confidence            47999995 999999999999998  45554421110  00  00                     011  244555666


Q ss_pred             CCCcchHhhcccccEEEEccC-----------------CHHHHHHHHHHHHhcCC-CEEEecccccee
Q 008516           92 KDPKFNVEFFKQFNVVLNGLD-----------------NLDARRHVNRLCLAADV-PLVESGTTGFLG  141 (563)
Q Consensus        92 ~~~~~~~~~~~~~dvVi~alD-----------------n~~ar~~in~~c~~~~~-pli~~gt~G~~G  141 (563)
                      .+ ..-.+.+++.|+||.+..                 |...-..+-+.|.+.++ .+|..++.+.+|
T Consensus        53 ~~-~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~vyg  119 (313)
T 3ehe_A           53 AA-DDIKDYLKGAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTSTVYG  119 (313)
T ss_dssp             TT-SCCHHHHTTCSEEEECCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEECCGGGGC
T ss_pred             Ch-HHHHHHhcCCCEEEECCCCCChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCchHHhC
Confidence            54 333566778898887532                 12222334455666665 678877776655

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=94.70  E-value=0.074  Score=52.26  Aligned_cols=81  Identities=16%  Similarity=0.313  Sum_probs=57.3

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      +++++++|.| .||||.++++.|+..|. ++.++|.+                   ..+.+.+.+.+....+...+..+.
T Consensus         8 l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~~   67 (267)
T 3t4x_A            8 LKGKTALVTGSTAGIGKAIATSLVAEGA-NVLINGRR-------------------EENVNETIKEIRAQYPDAILQPVV   67 (267)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESS-------------------HHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHhhCCCceEEEEe
Confidence            5667888888 58999999999999997 57777632                   245556667777777777888877


Q ss_pred             cCCCCCcchHhh---cccccEEEEc
Q 008516           89 ANVKDPKFNVEF---FKQFNVVLNG  110 (563)
Q Consensus        89 ~~i~~~~~~~~~---~~~~dvVi~a  110 (563)
                      .++++...-.++   +.+.|++|++
T Consensus        68 ~D~~~~~~~~~~~~~~g~id~lv~n   92 (267)
T 3t4x_A           68 ADLGTEQGCQDVIEKYPKVDILINN   92 (267)
T ss_dssp             CCTTSHHHHHHHHHHCCCCSEEEEC
T ss_pred             cCCCCHHHHHHHHHhcCCCCEEEEC
Confidence            777543222222   3467888875

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=94.64  E-value=0.13  Score=52.25  Aligned_cols=41  Identities=22%  Similarity=0.270  Sum_probs=33.3

Q ss_pred             CCCHHHHHHHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            1 MVSERQLEAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         1 ~~~~~~q~kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      |++.   +.+++++|+|.| .|+||..+++.|...|. +++++|.+
T Consensus         1 mi~~---~~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   42 (357)
T 1rkx_A            1 MINN---SFWQGKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLT   42 (357)
T ss_dssp             -CCH---HHHTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCc---hhhCCCEEEEECCCchHHHHHHHHHHhCCC-eEEEEeCC
Confidence            5555   457889999999 59999999999999996 68887753

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=94.63  E-value=0.12  Score=53.32  Aligned_cols=108  Identities=14%  Similarity=0.180  Sum_probs=62.9

Q ss_pred             HHcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516            9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus         9 kL~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      +++.++|+|.|+ |.||..+++.|...|..+++++|...-..    ...+-                     ..-+++.+
T Consensus        29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~----~~~l~---------------------~~~~v~~~   83 (377)
T 2q1s_A           29 KLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAE----KINVP---------------------DHPAVRFS   83 (377)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCC----GGGSC---------------------CCTTEEEE
T ss_pred             HhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCc----hhhcc---------------------CCCceEEE
Confidence            466788999995 99999999999999944788776432110    00000                     01245556


Q ss_pred             ccCCCCCcchHhhcccccEEEEccCCH-----------------HHHHHHHHHHHhc-CC-CEEEecccccee
Q 008516           88 HANVKDPKFNVEFFKQFNVVLNGLDNL-----------------DARRHVNRLCLAA-DV-PLVESGTTGFLG  141 (563)
Q Consensus        88 ~~~i~~~~~~~~~~~~~dvVi~alDn~-----------------~ar~~in~~c~~~-~~-pli~~gt~G~~G  141 (563)
                      ..++.+...-.+.++++|+||.+....                 ..-..+-+.|... ++ .+|..++.+.+|
T Consensus        84 ~~Dl~d~~~l~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~~V~~SS~~vyg  156 (377)
T 2q1s_A           84 ETSITDDALLASLQDEYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGCSIA  156 (377)
T ss_dssp             CSCTTCHHHHHHCCSCCSEEEECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCCEEEEEEEC----
T ss_pred             ECCCCCHHHHHHHhhCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCHHHcC
Confidence            666654332345677899999864321                 1123344556665 54 677777665544

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=94.61  E-value=0.087  Score=51.69  Aligned_cols=81  Identities=20%  Similarity=0.273  Sum_probs=55.4

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      |++++++|.| .||||.++++.|+..|. ++.++|.+                   ..+.+.+.+.+.+..+..++..+.
T Consensus         6 l~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~~   65 (265)
T 3lf2_A            6 LSEAVAVVTGGSSGIGLATVELLLEAGA-AVAFCARD-------------------GERLRAAESALRQRFPGARLFASV   65 (265)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHHSTTCCEEEEE
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHHhcCCceEEEEe
Confidence            5678899998 68999999999999997 57777643                   245566666676666666677777


Q ss_pred             cCCCCCcchHhh-------cccccEEEEc
Q 008516           89 ANVKDPKFNVEF-------FKQFNVVLNG  110 (563)
Q Consensus        89 ~~i~~~~~~~~~-------~~~~dvVi~a  110 (563)
                      .++++...-..+       +.+.|++|++
T Consensus        66 ~Dv~~~~~v~~~~~~~~~~~g~id~lvnn   94 (265)
T 3lf2_A           66 CDVLDALQVRAFAEACERTLGCASILVNN   94 (265)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHCSCSEEEEC
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            777543221222       2355776664

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=94.55  E-value=0.19  Score=48.95  Aligned_cols=109  Identities=18%  Similarity=0.226  Sum_probs=58.9

Q ss_pred             HHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEE
Q 008516            7 LEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITA   86 (563)
Q Consensus         7 q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~   86 (563)
                      ...+..++|.|||+|.+|..++++|+..|. ++++.|.+.=.  .+.+.   .....+....    +.+.+..+....  
T Consensus        14 ~~~~~~~kIgiIG~G~mG~alA~~L~~~G~-~V~~~~r~~~~--~~~~~---~~~~~~~~~~----~~~~~~~~~~~~--   81 (245)
T 3dtt_A           14 NLYFQGMKIAVLGTGTVGRTMAGALADLGH-EVTIGTRDPKA--TLARA---EPDAMGAPPF----SQWLPEHPHVHL--   81 (245)
T ss_dssp             -----CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHH--HHTCC----------CCH----HHHGGGSTTCEE--
T ss_pred             ccccCCCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCChhh--hhhhh---hhhhhcchhh----hHHHhhcCceec--
Confidence            457889999999999999999999999996 68888754311  00000   0001111111    111111222111  


Q ss_pred             eccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHH-H-HhcCCCEEEec
Q 008516           87 HHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL-C-LAADVPLVESG  135 (563)
Q Consensus        87 ~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~-c-~~~~~pli~~g  135 (563)
                              ....+..++.|+||.++-....+..+.+. . ...+..+|+.+
T Consensus        82 --------~~~~e~~~~aDvVilavp~~~~~~~~~~i~~~~l~g~ivi~~s  124 (245)
T 3dtt_A           82 --------AAFADVAAGAELVVNATEGASSIAALTAAGAENLAGKILVDIA  124 (245)
T ss_dssp             --------EEHHHHHHHCSEEEECSCGGGHHHHHHHHCHHHHTTSEEEECC
T ss_pred             --------cCHHHHHhcCCEEEEccCcHHHHHHHHHhhhhhcCCCEEEECC
Confidence                    11345678899999999877666665543 1 11445555554

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=94.53  E-value=0.16  Score=49.21  Aligned_cols=80  Identities=24%  Similarity=0.446  Sum_probs=52.8

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      +++++++|.| .||||.++++.|+..|...+.++|.+.               +    + + ..+.+.+..+..++..+.
T Consensus         3 l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~---------------~----~-~-~~~~l~~~~~~~~~~~~~   61 (254)
T 1sby_A            3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVE---------------N----P-T-ALAELKAINPKVNITFHT   61 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSC---------------C----H-H-HHHHHHHHCTTSEEEEEE
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCc---------------h----H-H-HHHHHHHhCCCceEEEEE
Confidence            4678899998 689999999999999987688876431               0    1 1 123344455566777777


Q ss_pred             cCCCCC-cchHhhc-------ccccEEEEc
Q 008516           89 ANVKDP-KFNVEFF-------KQFNVVLNG  110 (563)
Q Consensus        89 ~~i~~~-~~~~~~~-------~~~dvVi~a  110 (563)
                      .++++. ..-.+++       .+.|+||++
T Consensus        62 ~D~~~~~~~~~~~~~~~~~~~g~id~lv~~   91 (254)
T 1sby_A           62 YDVTVPVAESKKLLKKIFDQLKTVDILING   91 (254)
T ss_dssp             CCTTSCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             EecCCChHHHHHHHHHHHHhcCCCCEEEEC
Confidence            777643 2222222       367888885

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=94.48  E-value=0.11  Score=52.15  Aligned_cols=110  Identities=23%  Similarity=0.271  Sum_probs=63.3

Q ss_pred             cCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        11 ~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      .+++|+|.| .|+||..+++.|+..|. +++++|.+.-.               ..    ...+.+.+.. ..+++.+..
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~---------------~~----~~~~~~~~~~-~~~~~~~~~   62 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGY-DVVIADNLVNS---------------KR----EAIARIEKIT-GKTPAFHET   62 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCCSSS---------------CT----HHHHHHHHHH-SCCCEEECC
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCC-cEEEEecCCcc---------------hH----HHHHHHHhhc-CCCceEEEe
Confidence            356899998 59999999999999996 57776632210               00    1112222221 123455566


Q ss_pred             CCCCCcchHhhcc--cccEEEEccC-----------------CHHHHHHHHHHHHhcCC-CEEEecccccee
Q 008516           90 NVKDPKFNVEFFK--QFNVVLNGLD-----------------NLDARRHVNRLCLAADV-PLVESGTTGFLG  141 (563)
Q Consensus        90 ~i~~~~~~~~~~~--~~dvVi~alD-----------------n~~ar~~in~~c~~~~~-pli~~gt~G~~G  141 (563)
                      ++++...-.+.++  +.|+||++..                 |...-..+-+.|++.+. .+|..++.+.+|
T Consensus        63 Dl~d~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g  134 (341)
T 3enk_A           63 DVSDERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSSATVYG  134 (341)
T ss_dssp             CTTCHHHHHHHHHHSCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGBC
T ss_pred             ecCCHHHHHHHHhccCCcEEEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEEecceEec
Confidence            6654433344555  7888888542                 12222344455666664 577776655544

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=94.41  E-value=0.15  Score=51.84  Aligned_cols=72  Identities=18%  Similarity=0.316  Sum_probs=49.6

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHh----hCCCceEEEecc
Q 008516           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLK----FRPQMSITAHHA   89 (563)
Q Consensus        14 ~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~----~np~v~I~~~~~   89 (563)
                      ||.|+|+|.+|..++-.|+..|++++.++|.+.                   .|++..+..+.+    .+..++|.+..+
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~-------------------~~~~g~~~dl~~~~~~~~~~~~i~~t~d   61 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTP-------------------GKPQGEALDLAHAAAELGVDIRISGSNS   61 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSST-------------------THHHHHHHHHHHHHHHHTCCCCEEEESC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCCh-------------------hhHHHHHHHHHHhhhhcCCCeEEEECCC
Confidence            689999999999999999999996699998441                   223322233332    344566665421


Q ss_pred             CCCCCcchHhhcccccEEEEccC
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGLD  112 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~alD  112 (563)
                              .+-++++|+||.+..
T Consensus        62 --------~~a~~~aD~Vi~~ag   76 (308)
T 2d4a_B           62 --------YEDMRGSDIVLVTAG   76 (308)
T ss_dssp             --------GGGGTTCSEEEECCS
T ss_pred             --------HHHhCCCCEEEEeCC
Confidence                    134789999999854

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=94.41  E-value=0.091  Score=53.97  Aligned_cols=73  Identities=21%  Similarity=0.220  Sum_probs=51.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCC-CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC----CceEEE
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP----QMSITA   86 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gv-g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np----~v~I~~   86 (563)
                      ..||.|+|+|.+|+.++..|+..|. ++++++|.+                   ..|++..+.-+++..|    .+++. 
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~-------------------~~k~~g~a~DL~~~~~~~~~~v~i~-   64 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVN-------------------KEKAMGDVMDLNHGKAFAPQPVKTS-   64 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC-------------------HHHHHHHHHHHHHTGGGSSSCCEEE-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecc-------------------hHHHHHHHHHHHhccccccCCeEEE-
Confidence            4689999999999999999999997 589998832                   3456655555554433    33332 


Q ss_pred             eccCCCCCcchHhhcccccEEEEccC
Q 008516           87 HHANVKDPKFNVEFFKQFNVVLNGLD  112 (563)
Q Consensus        87 ~~~~i~~~~~~~~~~~~~dvVi~alD  112 (563)
                       .+.       .+-++++|+||.+..
T Consensus        65 -~~~-------~~a~~~aDvVvi~ag   82 (326)
T 3pqe_A           65 -YGT-------YEDCKDADIVCICAG   82 (326)
T ss_dssp             -EEC-------GGGGTTCSEEEECCS
T ss_pred             -eCc-------HHHhCCCCEEEEecc
Confidence             211       245789999999764

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=94.37  E-value=0.046  Score=58.01  Aligned_cols=90  Identities=17%  Similarity=0.236  Sum_probs=62.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i   91 (563)
                      +.+|+|+|+|.+|..+++.|...|+ .+++||.|.-                   +++.    +++.  +  +..+.++.
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~-~vvvId~d~~-------------------~v~~----~~~~--g--~~vi~GDa   55 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGV-KMVVLDHDPD-------------------HIET----LRKF--G--MKVFYGDA   55 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEECCHH-------------------HHHH----HHHT--T--CCCEESCT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHH-------------------HHHH----HHhC--C--CeEEEcCC
Confidence            4689999999999999999999997 6899986632                   2222    2222  2  23344555


Q ss_pred             CCCcchH-hhcccccEEEEccCCHHHHHHHHHHHHhcCC
Q 008516           92 KDPKFNV-EFFKQFNVVLNGLDNLDARRHVNRLCLAADV  129 (563)
Q Consensus        92 ~~~~~~~-~~~~~~dvVi~alDn~~ar~~in~~c~~~~~  129 (563)
                      ++...-. .-+.++|+||.++++.+.-..+-..++..+.
T Consensus        56 t~~~~L~~agi~~A~~viv~~~~~~~n~~i~~~ar~~~p   94 (413)
T 3l9w_A           56 TRMDLLESAGAAKAEVLINAIDDPQTNLQLTEMVKEHFP   94 (413)
T ss_dssp             TCHHHHHHTTTTTCSEEEECCSSHHHHHHHHHHHHHHCT
T ss_pred             CCHHHHHhcCCCccCEEEECCCChHHHHHHHHHHHHhCC
Confidence            4322111 2257899999999998888888888877654

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=94.36  E-value=0.18  Score=50.89  Aligned_cols=37  Identities=27%  Similarity=0.301  Sum_probs=28.8

Q ss_pred             HHHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         8 ~kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ..+..++|+|.| .|+||..+++.|+..|. +++++|.+
T Consensus        17 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~   54 (333)
T 2q1w_A           17 RGSHMKKVFITGICGQIGSHIAELLLERGD-KVVGIDNF   54 (333)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             ecCCCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECC
Confidence            356678999998 69999999999999994 78888754

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=94.34  E-value=0.15  Score=52.50  Aligned_cols=34  Identities=24%  Similarity=0.342  Sum_probs=28.8

Q ss_pred             cCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           11 KGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        11 ~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +.++|+|.|+ |.||..+++.|+..|. +++++|.+
T Consensus        28 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   62 (379)
T 2c5a_A           28 ENLKISITGAGGFIASHIARRLKHEGH-YVIASDWK   62 (379)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             cCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEECC
Confidence            3468999997 9999999999999995 78888754

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=94.34  E-value=0.069  Score=51.48  Aligned_cols=42  Identities=29%  Similarity=0.537  Sum_probs=32.4

Q ss_pred             CCCHHHHHHHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            1 MVSERQLEAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         1 ~~~~~~q~kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      |.+.+.. ++.+++|+|.| .||||.++++.|+..|. ++.++|.
T Consensus         1 m~~~~~~-~~~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r   43 (255)
T 1fmc_A            1 MFNSDNL-RLDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDI   43 (255)
T ss_dssp             CCCGGGG-CCTTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEES
T ss_pred             CCCccCC-CCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEcC
Confidence            4444432 36788899998 58999999999999996 6777763

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=94.32  E-value=0.14  Score=47.82  Aligned_cols=94  Identities=17%  Similarity=0.251  Sum_probs=58.0

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516           13 AKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (563)
Q Consensus        13 ~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i   91 (563)
                      +||+|.|+ |+||..+++.|+..|. ++++++.+.                   .+..       .+.+.+  +.+..++
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~-------------------~~~~-------~~~~~~--~~~~~D~   51 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGH-EVTAIVRNA-------------------GKIT-------QTHKDI--NILQKDI   51 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCS-------------------HHHH-------HHCSSS--EEEECCG
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCC-EEEEEEcCc-------------------hhhh-------hccCCC--eEEeccc
Confidence            47999995 9999999999999995 677776431                   1211       111333  4455566


Q ss_pred             CCCcchHhhcccccEEEEccCC--------HHHHHHHHHHHHhcC-CCEEEeccc
Q 008516           92 KDPKFNVEFFKQFNVVLNGLDN--------LDARRHVNRLCLAAD-VPLVESGTT  137 (563)
Q Consensus        92 ~~~~~~~~~~~~~dvVi~alDn--------~~ar~~in~~c~~~~-~pli~~gt~  137 (563)
                      ++...  +.+.++|+||++...        ...-..+-+.|++.+ ..+|..++.
T Consensus        52 ~d~~~--~~~~~~d~vi~~ag~~~~~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~  104 (221)
T 3ew7_A           52 FDLTL--SDLSDQNVVVDAYGISPDEAEKHVTSLDHLISVLNGTVSPRLLVVGGA  104 (221)
T ss_dssp             GGCCH--HHHTTCSEEEECCCSSTTTTTSHHHHHHHHHHHHCSCCSSEEEEECCC
T ss_pred             cChhh--hhhcCCCEEEECCcCCccccchHHHHHHHHHHHHHhcCCceEEEEecc
Confidence            44332  667899999997532        233344555565553 345555443

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=94.29  E-value=0.039  Score=59.33  Aligned_cols=97  Identities=14%  Similarity=0.230  Sum_probs=65.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i   91 (563)
                      .+||+|+|+|.+|..+++.|...|. .+++||.|.=.                   .    +.+.+.   ..+..+.++.
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~-~v~vId~d~~~-------------------~----~~~~~~---~~~~~i~Gd~   55 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENN-DITIVDKDGDR-------------------L----RELQDK---YDLRVVNGHA   55 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTE-EEEEEESCHHH-------------------H----HHHHHH---SSCEEEESCT
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHHH-------------------H----HHHHHh---cCcEEEEEcC
Confidence            4689999999999999999998885 69999966421                   1    122211   1234455555


Q ss_pred             CCCc-chHhhcccccEEEEccCCHHHHHHHHHHHHhc-CCCEEEec
Q 008516           92 KDPK-FNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA-DVPLVESG  135 (563)
Q Consensus        92 ~~~~-~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~-~~pli~~g  135 (563)
                      ++.. ....-.+++|++|.++++.+.-..+..+++.. +.|-+-+.
T Consensus        56 ~~~~~L~~Agi~~ad~~ia~t~~De~Nl~~~~~Ak~~~~~~~~iar  101 (461)
T 4g65_A           56 SHPDVLHEAGAQDADMLVAVTNTDETNMAACQVAFTLFNTPNRIAR  101 (461)
T ss_dssp             TCHHHHHHHTTTTCSEEEECCSCHHHHHHHHHHHHHHHCCSSEEEE
T ss_pred             CCHHHHHhcCCCcCCEEEEEcCChHHHHHHHHHHHHhcCCccceeE
Confidence            4322 22334688999999999988877777777763 66655443

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=94.21  E-value=0.25  Score=48.42  Aligned_cols=99  Identities=15%  Similarity=0.204  Sum_probs=60.5

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516           13 AKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (563)
Q Consensus        13 ~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i   91 (563)
                      ++|+|.|+ |.+|..+++.|...+-.++++++.+.-....+                         ..+  .++.+..++
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~-------------------------~~~--~v~~~~~D~   53 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDD-------------------------WRG--KVSVRQLDY   53 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGG-------------------------GBT--TBEEEECCT
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHh-------------------------hhC--CCEEEEcCC
Confidence            47999995 99999999999987334677766443111100                         012  344555666


Q ss_pred             CCCcchHhhcccccEEEEccCC-------HHHHHHHHHHHHhcCC-CEEEecccc
Q 008516           92 KDPKFNVEFFKQFNVVLNGLDN-------LDARRHVNRLCLAADV-PLVESGTTG  138 (563)
Q Consensus        92 ~~~~~~~~~~~~~dvVi~alDn-------~~ar~~in~~c~~~~~-pli~~gt~G  138 (563)
                      ++...-.+.++++|+||++...       ...-..+-+.|.+.++ .+|..++.|
T Consensus        54 ~d~~~l~~~~~~~d~vi~~a~~~~~~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~~  108 (289)
T 3e48_A           54 FNQESMVEAFKGMDTVVFIPSIIHPSFKRIPEVENLVYAAKQSGVAHIIFIGYYA  108 (289)
T ss_dssp             TCHHHHHHHTTTCSEEEECCCCCCSHHHHHHHHHHHHHHHHHTTCCEEEEEEESC
T ss_pred             CCHHHHHHHHhCCCEEEEeCCCCccchhhHHHHHHHHHHHHHcCCCEEEEEcccC
Confidence            5443335567899999986532       2333455566777775 466666543

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=94.17  E-value=0.083  Score=51.76  Aligned_cols=96  Identities=11%  Similarity=0.116  Sum_probs=60.2

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        12 ~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      .++|+|.| .|+||.++++.|+..|. ++.++|.+.....                              ..+++.+..+
T Consensus         3 ~k~vlVTGasg~IG~~la~~L~~~G~-~V~~~~r~~~~~~------------------------------~~~~~~~~~D   51 (267)
T 3rft_A            3 MKRLLVTGAAGQLGRVMRERLAPMAE-ILRLADLSPLDPA------------------------------GPNEECVQCD   51 (267)
T ss_dssp             EEEEEEESTTSHHHHHHHHHTGGGEE-EEEEEESSCCCCC------------------------------CTTEEEEECC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCC-EEEEEecCCcccc------------------------------CCCCEEEEcC
Confidence            35789998 69999999999999985 6778775432111                              1245556666


Q ss_pred             CCCCcchHhhcccccEEEEcc-----CC--------HHHHHHHHHHHHhcCC-CEEEecccc
Q 008516           91 VKDPKFNVEFFKQFNVVLNGL-----DN--------LDARRHVNRLCLAADV-PLVESGTTG  138 (563)
Q Consensus        91 i~~~~~~~~~~~~~dvVi~al-----Dn--------~~ar~~in~~c~~~~~-pli~~gt~G  138 (563)
                      +++...-..++++.|+||++.     ++        ...-..+-+.|++.+. .+|..++..
T Consensus        52 l~d~~~~~~~~~~~D~vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~  113 (267)
T 3rft_A           52 LADANAVNAMVAGCDGIVHLGGISVEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASSNH  113 (267)
T ss_dssp             TTCHHHHHHHHTTCSEEEECCSCCSCCCHHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGG
T ss_pred             CCCHHHHHHHHcCCCEEEECCCCcCcCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcchH
Confidence            654433345667788888752     22        1222345566666664 566665543

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=94.17  E-value=0.14  Score=51.72  Aligned_cols=115  Identities=23%  Similarity=0.198  Sum_probs=63.3

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        12 ~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      .++|+|.| .|+||..+++.|+..|. +++++|...-...+.         .-...+.    +.+.+.. ..+++.+..+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~r~~---------~~~~~~~----~~l~~~~-~~~~~~~~~D   66 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGY-LPVVIDNFHNAFRGG---------GSLPESL----RRVQELT-GRSVEFEEMD   66 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC-CEEEEECSSSSCBCS---------SSSBHHH----HHHHHHH-TCCCEEEECC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEecCCcccccc---------cccHHHH----HHHHhcc-CCceEEEECC
Confidence            46899998 59999999999999995 677776432111110         0011111    1222211 1234555566


Q ss_pred             CCCCcchHhhcc--cccEEEEccCC-----------------HHHHHHHHHHHHhcCC-CEEEecccccee
Q 008516           91 VKDPKFNVEFFK--QFNVVLNGLDN-----------------LDARRHVNRLCLAADV-PLVESGTTGFLG  141 (563)
Q Consensus        91 i~~~~~~~~~~~--~~dvVi~alDn-----------------~~ar~~in~~c~~~~~-pli~~gt~G~~G  141 (563)
                      +++...-.+.++  ++|+||++...                 ...-..+-+.|.+.++ .+|..++.+.+|
T Consensus        67 ~~~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g  137 (348)
T 1ek6_A           67 ILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYG  137 (348)
T ss_dssp             TTCHHHHHHHHHHCCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGC
T ss_pred             CCCHHHHHHHHHhcCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhC
Confidence            654332234555  78999986431                 1112334455666664 577766655544

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=94.16  E-value=0.11  Score=51.79  Aligned_cols=32  Identities=22%  Similarity=0.332  Sum_probs=27.3

Q ss_pred             CCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           12 GAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        12 ~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +++|+|.|+ |+||..+++.|+..|. +++++|.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r   34 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNW-HAVGCGF   34 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEC-
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCC-eEEEEcc
Confidence            578999996 9999999999999994 6887774

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=94.16  E-value=0.13  Score=52.29  Aligned_cols=37  Identities=32%  Similarity=0.588  Sum_probs=28.3

Q ss_pred             HHcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         9 kL~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .+.+++|+|.|+ |.||..+++.|+..|..+++++|..
T Consensus        43 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~   80 (357)
T 2x6t_A           43 GIEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNL   80 (357)
T ss_dssp             -----CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecC
Confidence            356689999997 9999999999999996678888754

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=94.15  E-value=0.16  Score=51.30  Aligned_cols=73  Identities=18%  Similarity=0.139  Sum_probs=49.3

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCC-eEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC----CCceEEEe
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQ-DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR----PQMSITAH   87 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg-~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~n----p~v~I~~~   87 (563)
                      +||.|+|+|.+|..++..|+..|.. +++++|.+.                   .|++..+..+.+.+    ...+|.+.
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~-------------------~~~~g~~~dl~~~~~~~~~~~~i~~t   61 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE-------------------DLAVGEAMDLAHAAAGIDKYPKIVGG   61 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH-------------------HHHHHHHHHHHHHHHTTTCCCEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCh-------------------HHHHHHHHHHHhhhhhcCCCCEEEEe
Confidence            4799999999999999999999974 899988432                   23332222233322    34566553


Q ss_pred             ccCCCCCcchHhhcccccEEEEccC
Q 008516           88 HANVKDPKFNVEFFKQFNVVLNGLD  112 (563)
Q Consensus        88 ~~~i~~~~~~~~~~~~~dvVi~alD  112 (563)
                      .+        .+-++++|+||.+..
T Consensus        62 ~d--------~~a~~~aDiVViaag   78 (294)
T 1oju_A           62 AD--------YSLLKGSEIIVVTAG   78 (294)
T ss_dssp             SC--------GGGGTTCSEEEECCC
T ss_pred             CC--------HHHhCCCCEEEECCC
Confidence            21        345789999999864

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=94.13  E-value=0.37  Score=48.61  Aligned_cols=74  Identities=22%  Similarity=0.342  Sum_probs=49.2

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCC-CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC----CCceEEEe
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR----PQMSITAH   87 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gv-g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~n----p~v~I~~~   87 (563)
                      .||.|+|+|.+|+.++..|+..|+ .+++++|.+                   ..|++..+..+.+.+    ..+++.. 
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~-------------------~~~~~~~~~~l~~~~~~~~~~~~~~~-   61 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN-------------------EAKVKADQIDFQDAMANLEAHGNIVI-   61 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS-------------------HHHHHHHHHHHHHHGGGSSSCCEEEE-
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCC-------------------HHHHHHHHHHHHhhhhhcCCCeEEEe-
Confidence            489999999999999999999997 678888743                   224444443333222    1233321 


Q ss_pred             ccCCCCCcchHhhcccccEEEEccCCH
Q 008516           88 HANVKDPKFNVEFFKQFNVVLNGLDNL  114 (563)
Q Consensus        88 ~~~i~~~~~~~~~~~~~dvVi~alDn~  114 (563)
                       .+       .+-++++|+||.++-..
T Consensus        62 -~d-------~~~~~~aDvViiav~~~   80 (309)
T 1hyh_A           62 -ND-------WAALADADVVISTLGNI   80 (309)
T ss_dssp             -SC-------GGGGTTCSEEEECCSCG
T ss_pred             -CC-------HHHhCCCCEEEEecCCc
Confidence             11       13468999999998653

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=94.12  E-value=0.18  Score=50.53  Aligned_cols=110  Identities=17%  Similarity=0.167  Sum_probs=62.5

Q ss_pred             cCCcEEEEC-CcHHHHHHHHHHHHhCC-CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516           11 KGAKVLMVG-AGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        11 ~~~~VlvvG-aGgiG~ellknLal~Gv-g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      .+++|+|.| .|+||..+++.|+..|- -+++++|...-. .+..+                    +.++...-+++.+.
T Consensus         2 ~~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~-~~~~~--------------------~~~~~~~~~~~~~~   60 (336)
T 2hun_A            2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYG-SNPAN--------------------LKDLEDDPRYTFVK   60 (336)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTT-CCGGG--------------------GTTTTTCTTEEEEE
T ss_pred             CCCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCccc-CchhH--------------------HhhhccCCceEEEE
Confidence            456899999 59999999999999984 368877754210 01000                    00111112455556


Q ss_pred             cCCCCCcchHhhcccccEEEEccCC-----------------HHHHHHHHHHHHhcC--CCEEEecccccee
Q 008516           89 ANVKDPKFNVEFFKQFNVVLNGLDN-----------------LDARRHVNRLCLAAD--VPLVESGTTGFLG  141 (563)
Q Consensus        89 ~~i~~~~~~~~~~~~~dvVi~alDn-----------------~~ar~~in~~c~~~~--~pli~~gt~G~~G  141 (563)
                      .++++...-.+.+.+.|+||++...                 ...-..+-+.|...+  ..+|..++.+.+|
T Consensus        61 ~Dl~d~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg  132 (336)
T 2hun_A           61 GDVADYELVKELVRKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYG  132 (336)
T ss_dssp             CCTTCHHHHHHHHHTCSEEEECCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGC
T ss_pred             cCCCCHHHHHHHhhCCCEEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHC
Confidence            6665433233455788999885421                 112233445566554  3677777665544

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=94.06  E-value=0.21  Score=50.49  Aligned_cols=73  Identities=18%  Similarity=0.190  Sum_probs=49.9

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCC-CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHh----hCCCceEEEe
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLK----FRPQMSITAH   87 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gv-g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~----~np~v~I~~~   87 (563)
                      +||.|+|+|++|+.++-.|+..|. ++|.|+|-                   -+.|++.-+.-+.+    ++...++...
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di-------------------~~~~~~G~a~DL~h~~~~~~~~~~i~~~   61 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDI-------------------AEDLAVGEAMDLAHAAAGIDKYPKIVGG   61 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECS-------------------SHHHHHHHHHHHHHHHGGGTCCCEEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeC-------------------CCCcchhhhhhhhcccccCCCCCeEecC
Confidence            489999999999999999999986 78999872                   23345544444554    3333444432


Q ss_pred             ccCCCCCcchHhhcccccEEEEccC
Q 008516           88 HANVKDPKFNVEFFKQFNVVLNGLD  112 (563)
Q Consensus        88 ~~~i~~~~~~~~~~~~~dvVi~alD  112 (563)
                      .        +.+-+++.|+||.+..
T Consensus        62 ~--------d~~~~~~aDvVvitAG   78 (294)
T 2x0j_A           62 A--------DYSLLKGSEIIVVTAG   78 (294)
T ss_dssp             S--------CGGGGTTCSEEEECCC
T ss_pred             C--------CHHHhCCCCEEEEecC
Confidence            2        1234789999988643

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=94.06  E-value=0.17  Score=51.42  Aligned_cols=73  Identities=23%  Similarity=0.306  Sum_probs=49.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCC-CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC----CceEEE
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP----QMSITA   86 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gv-g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np----~v~I~~   86 (563)
                      ..||.|+|+|.+|..++..|+..|. ++|.++|.+                   ..|++..+..+.+..+    .+++..
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~-------------------~~~~~~~~~dl~~~~~~~~~~~~i~~   66 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN-------------------ESKAIGDAMDFNHGKVFAPKPVDIWH   66 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS-------------------HHHHHHHHHHHHHHTTSSSSCCEEEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCC-------------------cchHHHHHhhHHHHhhhcCCCeEEEc
Confidence            3689999999999999999999885 679998843                   1233333333333333    455542


Q ss_pred             eccCCCCCcchHhhcccccEEEEccC
Q 008516           87 HHANVKDPKFNVEFFKQFNVVLNGLD  112 (563)
Q Consensus        87 ~~~~i~~~~~~~~~~~~~dvVi~alD  112 (563)
                        +.       .+-++++|+||.+..
T Consensus        67 --~~-------~~al~~aDvViia~~   83 (316)
T 1ldn_A           67 --GD-------YDDCRDADLVVICAG   83 (316)
T ss_dssp             --CC-------GGGTTTCSEEEECCS
T ss_pred             --Cc-------HHHhCCCCEEEEcCC
Confidence              11       234789999999854

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=94.04  E-value=0.069  Score=53.40  Aligned_cols=31  Identities=26%  Similarity=0.448  Sum_probs=29.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEe
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      +++++|+|+||.|..++..|+..| .+|+|++
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G-~~v~V~n  148 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQG-LQVSVLN  148 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT-CEEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEe
Confidence            789999999999999999999999 8999975

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=94.04  E-value=0.14  Score=52.37  Aligned_cols=38  Identities=26%  Similarity=0.448  Sum_probs=31.1

Q ss_pred             HHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         8 ~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .+....||.|+|+|.+|..++..|+..|...++++|.|
T Consensus        10 ~~~~~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~   47 (328)
T 2hjr_A           10 TVIMRKKISIIGAGQIGSTIALLLGQKDLGDVYMFDII   47 (328)
T ss_dssp             ---CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             ccCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            34455799999999999999999999999569999854

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=94.03  E-value=0.14  Score=49.56  Aligned_cols=80  Identities=18%  Similarity=0.293  Sum_probs=52.5

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      ++++++++|.| .||||.++++.|+..|. ++.++|.+                   ..+.+.+++.+.+..  .++..+
T Consensus         6 ~~~~k~vlITGas~giG~~~a~~l~~~G~-~V~~~~r~-------------------~~~~~~~~~~~~~~~--~~~~~~   63 (253)
T 3qiv_A            6 RFENKVGIVTGSGGGIGQAYAEALAREGA-AVVVADIN-------------------AEAAEAVAKQIVADG--GTAISV   63 (253)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTT--CEEEEE
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCC-------------------HHHHHHHHHHHHhcC--CcEEEE
Confidence            46788899998 58999999999999997 57777643                   234555555555543  355666


Q ss_pred             ccCCCCCcchHhhc-------ccccEEEEc
Q 008516           88 HANVKDPKFNVEFF-------KQFNVVLNG  110 (563)
Q Consensus        88 ~~~i~~~~~~~~~~-------~~~dvVi~a  110 (563)
                      ..++++...-..++       .+.|+||++
T Consensus        64 ~~D~~~~~~~~~~~~~~~~~~g~id~li~~   93 (253)
T 3qiv_A           64 AVDVSDPESAKAMADRTLAEFGGIDYLVNN   93 (253)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             EccCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            66665432222222       366777774

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=94.03  E-value=0.24  Score=46.57  Aligned_cols=95  Identities=19%  Similarity=0.160  Sum_probs=55.5

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (563)
Q Consensus        13 ~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i   91 (563)
                      .||+|+| +|.+|..+++.|+..|. +++++|.+.                   .+++.+++.+...-+...+..  .  
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~--~--   56 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGH-EIVVGSRRE-------------------EKAEAKAAEYRRIAGDASITG--M--   56 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSH-------------------HHHHHHHHHHHHHHSSCCEEE--E--
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHhccccccCCCCh--h--
Confidence            3799999 99999999999999996 688876431                   122222222111101111221  1  


Q ss_pred             CCCcchHhhcccccEEEEccCCHHHHHHHHHHHH-hcCCCEEEec
Q 008516           92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL-AADVPLVESG  135 (563)
Q Consensus        92 ~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~-~~~~pli~~g  135 (563)
                          ...+.++++|+|+.++.....+..+.++.. ..+..+++..
T Consensus        57 ----~~~~~~~~~D~Vi~~~~~~~~~~~~~~l~~~~~~~~vi~~~   97 (212)
T 1jay_A           57 ----KNEDAAEACDIAVLTIPWEHAIDTARDLKNILREKIVVSPL   97 (212)
T ss_dssp             ----EHHHHHHHCSEEEECSCHHHHHHHHHHTHHHHTTSEEEECC
T ss_pred             ----hHHHHHhcCCEEEEeCChhhHHHHHHHHHHHcCCCEEEEcC
Confidence                123457889999999976555555544321 1355555554

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=94.01  E-value=0.2  Score=50.86  Aligned_cols=34  Identities=21%  Similarity=0.484  Sum_probs=30.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ..||.|+|+|.+|+.++..|+..|...++++|.+
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~   37 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIA   37 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence            4689999999999999999999998679999854

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=93.98  E-value=0.098  Score=52.06  Aligned_cols=32  Identities=25%  Similarity=0.426  Sum_probs=28.4

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ++|.|||+|.+|+.++++|+..|. +++++|.+
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~   33 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGC-SVTIWNRS   33 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC-eEEEEcCC
Confidence            689999999999999999999996 68887744

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=93.97  E-value=0.042  Score=54.35  Aligned_cols=35  Identities=31%  Similarity=0.577  Sum_probs=31.8

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +.+ +++|+|+||.|..++..|...|+++|+++|.+
T Consensus       107 ~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~  141 (253)
T 3u62_A          107 VKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRT  141 (253)
T ss_dssp             CCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESC
T ss_pred             CCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            356 99999999999999999999999999998754

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=93.94  E-value=0.14  Score=50.66  Aligned_cols=84  Identities=18%  Similarity=0.255  Sum_probs=48.9

Q ss_pred             HHHHHHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCce
Q 008516            5 RQLEAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMS   83 (563)
Q Consensus         5 ~~q~kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~   83 (563)
                      +.+..+++++++|.| .||||.++++.|+..|. ++.++|.+                   ..+.+.+++.++...  .+
T Consensus        17 ~~~~m~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~-------------------~~~~~~~~~~l~~~~--~~   74 (279)
T 3sju_A           17 RGSHMSRPQTAFVTGVSSGIGLAVARTLAARGI-AVYGCARD-------------------AKNVSAAVDGLRAAG--HD   74 (279)
T ss_dssp             --------CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHTTT--CC
T ss_pred             CcccccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHhcC--Cc
Confidence            344556778899998 68999999999999997 47777643                   234555556665543  34


Q ss_pred             EEEeccCCCCCcchHhh-------cccccEEEEc
Q 008516           84 ITAHHANVKDPKFNVEF-------FKQFNVVLNG  110 (563)
Q Consensus        84 I~~~~~~i~~~~~~~~~-------~~~~dvVi~a  110 (563)
                      +..+..++++...-.++       +.+.|+||++
T Consensus        75 ~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~lv~n  108 (279)
T 3sju_A           75 VDGSSCDVTSTDEVHAAVAAAVERFGPIGILVNS  108 (279)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHHHCSCCEEEEC
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHcCCCcEEEEC
Confidence            55566666543211222       2356777764

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=93.90  E-value=0.16  Score=50.23  Aligned_cols=81  Identities=21%  Similarity=0.329  Sum_probs=51.0

Q ss_pred             HHcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516            9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus         9 kL~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      .+.+++|+|.|+ ||||.++++.|+..|. ++.++|.+.                   .+.+.+++.+.+.. ..++..+
T Consensus        25 ~~~~k~vlITGasggIG~~la~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~-~~~~~~~   83 (286)
T 1xu9_A           25 MLQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSK-------------------ETLQKVVSHCLELG-AASAHYI   83 (286)
T ss_dssp             GGTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHHT-CSEEEEE
T ss_pred             hcCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCH-------------------HHHHHHHHHHHHhC-CCceEEE
Confidence            467788999985 8999999999999996 688876431                   23344444454443 2356666


Q ss_pred             ccCCCCCcchHhhc-------ccccEEEEc
Q 008516           88 HANVKDPKFNVEFF-------KQFNVVLNG  110 (563)
Q Consensus        88 ~~~i~~~~~~~~~~-------~~~dvVi~a  110 (563)
                      ..++++...-..++       .+.|+||++
T Consensus        84 ~~Dl~d~~~v~~~~~~~~~~~g~iD~li~n  113 (286)
T 1xu9_A           84 AGTMEDMTFAEQFVAQAGKLMGGLDMLILN  113 (286)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHTSCSEEEEC
T ss_pred             eCCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            66665432212222       356777764

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=93.86  E-value=0.2  Score=51.06  Aligned_cols=37  Identities=32%  Similarity=0.650  Sum_probs=31.3

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCC-CeEEEEeCC
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMD   45 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gv-g~I~iiD~D   45 (563)
                      +++..||.|+|+|.+|..++-.|+..|. .+|.++|-+
T Consensus         3 ~m~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~   40 (317)
T 3d0o_A            3 KFKGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLD   40 (317)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            3456799999999999999999999886 679998843

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=93.85  E-value=0.2  Score=50.49  Aligned_cols=75  Identities=20%  Similarity=0.308  Sum_probs=48.8

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCC------CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCc
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGF------QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQM   82 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gv------g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v   82 (563)
                      +..++|+|.| .|+||..+++.|+..|.      .+++++|.+.-.   ..        .                ....
T Consensus        12 ~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~---~~--------~----------------~~~~   64 (342)
T 2hrz_A           12 FQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPE---AP--------A----------------GFSG   64 (342)
T ss_dssp             CSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCC---CC--------T----------------TCCS
T ss_pred             ccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCc---cc--------c----------------ccCC
Confidence            4567899999 69999999999999983      478887754211   00        0                0123


Q ss_pred             eEEEeccCCCCCcchHhhc-ccccEEEEcc
Q 008516           83 SITAHHANVKDPKFNVEFF-KQFNVVLNGL  111 (563)
Q Consensus        83 ~I~~~~~~i~~~~~~~~~~-~~~dvVi~al  111 (563)
                      +++.+..++++...-.+.+ .+.|+||++.
T Consensus        65 ~~~~~~~Dl~d~~~~~~~~~~~~d~vih~A   94 (342)
T 2hrz_A           65 AVDARAADLSAPGEAEKLVEARPDVIFHLA   94 (342)
T ss_dssp             EEEEEECCTTSTTHHHHHHHTCCSEEEECC
T ss_pred             ceeEEEcCCCCHHHHHHHHhcCCCEEEECC
Confidence            5566666665543333455 4789998854

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=93.84  E-value=0.16  Score=50.15  Aligned_cols=66  Identities=17%  Similarity=0.249  Sum_probs=45.4

Q ss_pred             HHHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC-CceEE
Q 008516            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP-QMSIT   85 (563)
Q Consensus         8 ~kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np-~v~I~   85 (563)
                      -.+.+++++|.| .||||.++++.|+..|. ++.++|.+                   ..+.+.+++.+++..+ ..++.
T Consensus         7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~   66 (281)
T 3svt_A            7 LSFQDRTYLVTGGGSGIGKGVAAGLVAAGA-SVMIVGRN-------------------PDKLAGAVQELEALGANGGAIR   66 (281)
T ss_dssp             -CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHTTCCSSCEEE
T ss_pred             cCcCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHHhCCCCceEE
Confidence            356788899998 68999999999999997 57777743                   2344555555655433 22566


Q ss_pred             EeccCCCC
Q 008516           86 AHHANVKD   93 (563)
Q Consensus        86 ~~~~~i~~   93 (563)
                      .+..++++
T Consensus        67 ~~~~Dv~~   74 (281)
T 3svt_A           67 YEPTDITN   74 (281)
T ss_dssp             EEECCTTS
T ss_pred             EEeCCCCC
Confidence            66666654

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=93.83  E-value=0.22  Score=49.30  Aligned_cols=37  Identities=27%  Similarity=0.431  Sum_probs=29.6

Q ss_pred             HHcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516            9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDT   46 (563)
Q Consensus         9 kL~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~   46 (563)
                      .++.++|+|.|+ |.+|..+++.|...|. +++++|...
T Consensus         4 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~   41 (321)
T 3vps_A            4 NTLKHRILITGGAGFIGGHLARALVASGE-EVTVLDDLR   41 (321)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTC-CEEEECCCS
T ss_pred             ccCCCeEEEECCCChHHHHHHHHHHHCCC-EEEEEecCC
Confidence            456789999997 9999999999999996 677777554

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=93.83  E-value=0.25  Score=49.59  Aligned_cols=107  Identities=15%  Similarity=0.173  Sum_probs=62.5

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (563)
Q Consensus        13 ~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i   91 (563)
                      ++|+|.| .|+||..+++.|+..|. +++++|...       |.           ......+.+.. .+  +++.+..++
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~-------~~-----------~~~~~~~~l~~-~~--~~~~~~~Dl   59 (347)
T 1orr_A            2 AKLLITGGCGFLGSNLASFALSQGI-DLIVFDNLS-------RK-----------GATDNLHWLSS-LG--NFEFVHGDI   59 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCC-------ST-----------THHHHHHHHHT-TC--CCEEEECCT
T ss_pred             cEEEEeCCCchhHHHHHHHHHhCCC-EEEEEeCCC-------cc-----------Cchhhhhhhcc-CC--ceEEEEcCC
Confidence            4799999 69999999999999995 677776321       10           01111122322 12  344555666


Q ss_pred             CCCcchHhhccc--ccEEEEccCC---------H--------HHHHHHHHHHHhcCCC--EEEecccccee
Q 008516           92 KDPKFNVEFFKQ--FNVVLNGLDN---------L--------DARRHVNRLCLAADVP--LVESGTTGFLG  141 (563)
Q Consensus        92 ~~~~~~~~~~~~--~dvVi~alDn---------~--------~ar~~in~~c~~~~~p--li~~gt~G~~G  141 (563)
                      ++...-.+.+++  +|+||++...         .        ..-..+-+.|...++.  +|..++.+.+|
T Consensus        60 ~d~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~SS~~v~g  130 (347)
T 1orr_A           60 RNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYG  130 (347)
T ss_dssp             TCHHHHHHHHHHHCCSEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGT
T ss_pred             CCHHHHHHHHhccCCCEEEECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeccHHHhC
Confidence            543323455666  8999986431         1        1123445566666654  77777665544

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=93.80  E-value=0.16  Score=51.89  Aligned_cols=167  Identities=15%  Similarity=0.228  Sum_probs=90.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC---CCceEEEec
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR---PQMSITAHH   88 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~n---p~v~I~~~~   88 (563)
                      ..+|.|||+|-+|+-++-.++..|+ .++++|.+.=   .+.+         +..+.....+.+.+..   +....+..-
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~-~V~l~D~~~~---~l~~---------~~~~i~~~l~~~~~~g~~~~~~~~~~~l   72 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGF-RVKLYDIEPR---QITG---------ALENIRKEMKSLQQSGSLKGSLSAEEQL   72 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTC-CEEEECSCHH---HHHH---------HHHHHHHHHHHHHHTTCCCSSSCHHHHH
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCC-eEEEEECCHH---HHHH---------HHHHHHHHHHHHHHcCCCCCccCHHHHH
Confidence            4589999999999999999999998 5889885431   1110         0011110111111110   000000000


Q ss_pred             cCCCCCcchHhhcccccEEEEcc-CCHHHHHHHHHHHHhcCC--CEEEeccccceee-EEEEeCCCCccccccCCCCCCC
Q 008516           89 ANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLAADV--PLVESGTTGFLGQ-VTVHVKGKTECYECQPKPAPKT  164 (563)
Q Consensus        89 ~~i~~~~~~~~~~~~~dvVi~al-Dn~~ar~~in~~c~~~~~--pli~~gt~G~~G~-v~v~~~~~t~Cy~C~~~~~~~~  164 (563)
                      .+++....-.+.++++|+|+-|. .+.+..+.+-+..-..-.  .++.+.|++..=. +.-...+..-|...++-.++.-
T Consensus        73 ~~i~~~~~l~~a~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~is~ia~~~~~p~r~ig~HffNP~~~  152 (319)
T 3ado_A           73 SLISSCTNLAEAVEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFTGLAHVKQCIVAHPVNPPYY  152 (319)
T ss_dssp             HTEEEECCHHHHTTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCHHHHHTTCTTGGGEEEEEECSSTTT
T ss_pred             hhcccccchHhHhccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhhccchhhhhhccCCCcEEEecCCCCccc
Confidence            11110011134588999999986 677777666554433322  4677777764310 0000122223334444445556


Q ss_pred             CCceeeccCCCCchhHHHHHHHHHHHHH
Q 008516          165 YPVCTITSTPSKFVHCIVWAKDLLFAKL  192 (563)
Q Consensus       165 ~p~cti~~~p~~~~hci~~a~~~lf~~l  192 (563)
                      -|.-.|...+.+....+..+.+ +...+
T Consensus       153 m~LVEiv~g~~Ts~~~~~~~~~-~~~~~  179 (319)
T 3ado_A          153 IPLVELVPHPETSPATVDRTHA-LMRKI  179 (319)
T ss_dssp             CCEEEEEECTTCCHHHHHHHHH-HHHHT
T ss_pred             cchHHhcCCCCCcHHHHHHHHH-HHHHh
Confidence            6888888888888888998887 45543

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=93.76  E-value=0.2  Score=48.85  Aligned_cols=34  Identities=21%  Similarity=0.368  Sum_probs=28.6

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +.+++++|.| .||||.++++.|+..|. ++.++|.
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r   39 (260)
T 2z1n_A            5 IQGKLAVVTAGSSGLGFASALELARNGA-RLLLFSR   39 (260)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            4567899998 68999999999999997 6777764

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=93.75  E-value=0.19  Score=49.52  Aligned_cols=77  Identities=18%  Similarity=0.227  Sum_probs=53.0

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHh-CCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           13 AKVLMVGA-GGIGCELLKTLALS-GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        13 ~~VlvvGa-GgiG~ellknLal~-Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      .||.|+|+ |.+|..+++.+... |+.-+-++|.+                                           .+
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~-------------------------------------------~d   37 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG-------------------------------------------DP   37 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT-------------------------------------------CC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC-------------------------------------------CC
Confidence            37999997 99999999998865 66444466532                                           01


Q ss_pred             CCCCcchHhhc-ccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccce
Q 008516           91 VKDPKFNVEFF-KQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFL  140 (563)
Q Consensus        91 i~~~~~~~~~~-~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~  140 (563)
                      +      .+.+ .+.|+||+.+. +++-...-+.|.++++|+|-+- .|+.
T Consensus        38 l------~~~~~~~~DvvIDfT~-p~a~~~~~~~a~~~g~~~VigT-TG~~   80 (245)
T 1p9l_A           38 L------SLLTDGNTEVVIDFTH-PDVVMGNLEFLIDNGIHAVVGT-TGFT   80 (245)
T ss_dssp             T------HHHHHTTCCEEEECSC-TTTHHHHHHHHHHTTCEEEECC-CCCC
T ss_pred             H------HHHhccCCcEEEEccC-hHHHHHHHHHHHHcCCCEEEcC-CCCC
Confidence            1      1223 37899999885 4555556678899999987663 4543

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=93.69  E-value=0.32  Score=48.68  Aligned_cols=102  Identities=19%  Similarity=0.274  Sum_probs=61.5

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHh-CCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           13 AKVLMVGA-GGIGCELLKTLALS-GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        13 ~~VlvvGa-GgiG~ellknLal~-Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      ++|+|.|+ |.||..+++.|... |. +++++|...-   .+.+                       +...-+++.+..+
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~---~~~~-----------------------~~~~~~~~~~~~D   53 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHY-EVYGLDIGSD---AISR-----------------------FLNHPHFHFVEGD   53 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTC-EEEEEESCCG---GGGG-----------------------GTTCTTEEEEECC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCC-EEEEEeCCcc---hHHH-----------------------hhcCCCeEEEecc
Confidence            47999996 99999999999998 64 6777775321   1100                       0001235555666


Q ss_pred             CCCC-cchHhhcccccEEEEccC--CH-------H--------HHHHHHHHHHhcCCCEEEecccccee
Q 008516           91 VKDP-KFNVEFFKQFNVVLNGLD--NL-------D--------ARRHVNRLCLAADVPLVESGTTGFLG  141 (563)
Q Consensus        91 i~~~-~~~~~~~~~~dvVi~alD--n~-------~--------ar~~in~~c~~~~~pli~~gt~G~~G  141 (563)
                      +++. ..-.+.++++|+||.+..  ..       .        .-..+-+.|...+..+|..++.+.+|
T Consensus        54 ~~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v~~SS~~v~g  122 (345)
T 2bll_A           54 ISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYG  122 (345)
T ss_dssp             TTTCSHHHHHHHHHCSEEEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEECCGGGGB
T ss_pred             ccCcHHHHHhhccCCCEEEEcccccCccchhcCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEecHHHcC
Confidence            6542 222345678899998522  11       1        12234456666667788877766555

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=93.60  E-value=0.23  Score=50.15  Aligned_cols=73  Identities=19%  Similarity=0.245  Sum_probs=48.0

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCC-CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC---CCceEEEec
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR---PQMSITAHH   88 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gv-g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~n---p~v~I~~~~   88 (563)
                      .||.|+|+|.+|..++..|+..|. ++++++|.+.                   .|++..+..+.+..   +..++..  
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~-------------------~~~~~~~~~l~~~~~~~~~~~i~~--   59 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE-------------------DRAQAEAEDIAHAAPVSHGTRVWH--   59 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH-------------------HHHHHHHHHHTTSCCTTSCCEEEE--
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH-------------------HHHHHHHHhhhhhhhhcCCeEEEE--
Confidence            489999999999999999999985 5799998542                   23332233333332   2344443  


Q ss_pred             cCCCCCcchHhhcccccEEEEccCC
Q 008516           89 ANVKDPKFNVEFFKQFNVVLNGLDN  113 (563)
Q Consensus        89 ~~i~~~~~~~~~~~~~dvVi~alDn  113 (563)
                      .       +.+-++++|+||.+...
T Consensus        60 ~-------~~~a~~~aDvVIi~~~~   77 (304)
T 2v6b_A           60 G-------GHSELADAQVVILTAGA   77 (304)
T ss_dssp             E-------CGGGGTTCSEEEECC--
T ss_pred             C-------CHHHhCCCCEEEEcCCC
Confidence            1       12347899999999753

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=93.57  E-value=0.33  Score=49.29  Aligned_cols=98  Identities=9%  Similarity=0.087  Sum_probs=60.9

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      ...+|.|||+|.+|..++++|+..|.-+++++|.+.-.              .  .|++...+.+.+.  ++   . ...
T Consensus        23 M~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~--------------~--~~~~~~~~~~~~~--g~---~-~~s   80 (317)
T 4ezb_A           23 MMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFND--------------P--AASGALRARAAEL--GV---E-PLD   80 (317)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGC--------------T--TTHHHHHHHHHHT--TC---E-EES
T ss_pred             cCCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCcc--------------c--cchHHHHHHHHHC--CC---C-CCC
Confidence            35789999999999999999999994478888754310              0  1233333333332  22   0 001


Q ss_pred             CCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHh--cCCCEEEecc
Q 008516           91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA--ADVPLVESGT  136 (563)
Q Consensus        91 i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~--~~~pli~~gt  136 (563)
                            ..+..++.|+||.++-.......+.++...  .+..+|+.++
T Consensus        81 ------~~e~~~~aDvVi~avp~~~~~~~~~~i~~~l~~~~ivv~~st  122 (317)
T 4ezb_A           81 ------DVAGIACADVVLSLVVGAATKAVAASAAPHLSDEAVFIDLNS  122 (317)
T ss_dssp             ------SGGGGGGCSEEEECCCGGGHHHHHHHHGGGCCTTCEEEECCS
T ss_pred             ------HHHHHhcCCEEEEecCCHHHHHHHHHHHhhcCCCCEEEECCC
Confidence                  235577899999998777666666554322  3445666554

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=93.52  E-value=0.16  Score=49.65  Aligned_cols=80  Identities=16%  Similarity=0.261  Sum_probs=51.7

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      +++++++|.| .||||.++++.|+..|. ++.++|.+.                   .+.+.+.+.+++.. ..++..+.
T Consensus         8 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~l~~~~-~~~~~~~~   66 (262)
T 3pk0_A            8 LQGRSVVVTGGTKGIGRGIATVFARAGA-NVAVAGRST-------------------ADIDACVADLDQLG-SGKVIGVQ   66 (262)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHTTS-SSCEEEEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhhC-CCcEEEEE
Confidence            5678888887 68999999999999997 688877432                   34455555555443 23566666


Q ss_pred             cCCCCCcchHhhc-------ccccEEEEc
Q 008516           89 ANVKDPKFNVEFF-------KQFNVVLNG  110 (563)
Q Consensus        89 ~~i~~~~~~~~~~-------~~~dvVi~a  110 (563)
                      .++++...-..++       .+.|++|++
T Consensus        67 ~Dv~~~~~v~~~~~~~~~~~g~id~lvnn   95 (262)
T 3pk0_A           67 TDVSDRAQCDALAGRAVEEFGGIDVVCAN   95 (262)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHSCCSEEEEC
T ss_pred             cCCCCHHHHHHHHHHHHHHhCCCCEEEEC
Confidence            6665432222222       356777764

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=93.50  E-value=0.21  Score=49.03  Aligned_cols=33  Identities=30%  Similarity=0.610  Sum_probs=29.7

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +++ +|+|+|+|++|..+++.|...|+ +++++|.
T Consensus       115 l~~-~v~iiG~G~~g~~~a~~l~~~g~-~v~v~~r  147 (263)
T 2d5c_A          115 LKG-PALVLGAGGAGRAVAFALREAGL-EVWVWNR  147 (263)
T ss_dssp             CCS-CEEEECCSHHHHHHHHHHHHTTC-CEEEECS
T ss_pred             CCC-eEEEECCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence            466 99999999999999999999998 8988763

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=93.48  E-value=0.22  Score=51.70  Aligned_cols=36  Identities=19%  Similarity=0.557  Sum_probs=30.3

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~   46 (563)
                      ++..+|.|||+|.+|..++++|+..|. .++++|.+.
T Consensus        20 m~~mkIgiIGlG~mG~~~A~~L~~~G~-~V~v~dr~~   55 (358)
T 4e21_A           20 FQSMQIGMIGLGRMGADMVRRLRKGGH-ECVVYDLNV   55 (358)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             hcCCEEEEECchHHHHHHHHHHHhCCC-EEEEEeCCH
Confidence            456899999999999999999999995 688887653

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=93.45  E-value=0.21  Score=47.90  Aligned_cols=37  Identities=30%  Similarity=0.531  Sum_probs=30.8

Q ss_pred             HHHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         8 ~kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ..+++++++|.| .||||.++++.|+..|. ++.++|.+
T Consensus        10 ~~l~~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~   47 (247)
T 3i1j_A           10 ELLKGRVILVTGAARGIGAAAARAYAAHGA-SVVLLGRT   47 (247)
T ss_dssp             TTTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             ccCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEecC
Confidence            357788899998 58999999999999997 58887743

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=93.44  E-value=0.15  Score=51.15  Aligned_cols=32  Identities=34%  Similarity=0.636  Sum_probs=28.7

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        13 ~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .+|.||| +|.+|..+++.|+..|. +++++|.+
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~G~-~V~~~~~~   54 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRASGY-PISILDRE   54 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTT
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            4899999 99999999999999997 68888754

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=93.42  E-value=0.59  Score=46.04  Aligned_cols=100  Identities=17%  Similarity=0.235  Sum_probs=59.8

Q ss_pred             CCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCc--hHHHHHHHHHHhhCCCceEEEec
Q 008516           12 GAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQ--SKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        12 ~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk--~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      .++|+|.|+ |++|..+++.|+..|. ++++++.+.-              .-..  .|++.+. .+.  .+++  +.+.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~--------------~~~~~~~~~~~~~-~l~--~~~v--~~v~   61 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGN-PTYALVRKTI--------------TAANPETKEELID-NYQ--SLGV--ILLE   61 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTC-CEEEEECCSC--------------CSSCHHHHHHHHH-HHH--HTTC--EEEE
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCC-cEEEEECCCc--------------ccCChHHHHHHHH-HHH--hCCC--EEEE
Confidence            468999996 9999999999999995 5777653310              0001  2333222 222  2333  4455


Q ss_pred             cCCCCCcchHhhcccccEEEEccCC--HHHHHHHHHHHHhcC-CCE
Q 008516           89 ANVKDPKFNVEFFKQFNVVLNGLDN--LDARRHVNRLCLAAD-VPL  131 (563)
Q Consensus        89 ~~i~~~~~~~~~~~~~dvVi~alDn--~~ar~~in~~c~~~~-~pl  131 (563)
                      .++.+...-...+++.|+||++...  ...-..+-+.|.+.+ ++.
T Consensus        62 ~D~~d~~~l~~~~~~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~  107 (307)
T 2gas_A           62 GDINDHETLVKAIKQVDIVICAAGRLLIEDQVKIIKAIKEAGNVKK  107 (307)
T ss_dssp             CCTTCHHHHHHHHTTCSEEEECSSSSCGGGHHHHHHHHHHHCCCSE
T ss_pred             eCCCCHHHHHHHHhCCCEEEECCcccccccHHHHHHHHHhcCCceE
Confidence            6665443335667899999997543  333344555666665 543

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=93.38  E-value=0.17  Score=49.33  Aligned_cols=34  Identities=18%  Similarity=0.335  Sum_probs=29.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCC---CeEEEEeCC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGF---QDIHIIDMD   45 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gv---g~I~iiD~D   45 (563)
                      ..+|.|||+|.+|+.+++.|+..|+   ..++++|.+
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~   40 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPS   40 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCC
Confidence            4689999999999999999999995   578888754

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=93.34  E-value=0.28  Score=50.01  Aligned_cols=74  Identities=19%  Similarity=0.267  Sum_probs=51.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCC-CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC---CCceEEEe
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR---PQMSITAH   87 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gv-g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~n---p~v~I~~~   87 (563)
                      ..||.|+|+|.+|..++-.|+..|. .+|.++|-                   -..|++..+.-+.+..   +.+++.+ 
T Consensus         5 ~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di-------------------~~~~~~g~~~dl~~~~~~~~~~~v~~-   64 (318)
T 1ez4_A            5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDV-------------------VKDRTKGDALDLEDAQAFTAPKKIYS-   64 (318)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS-------------------SHHHHHHHHHHHHGGGGGSCCCEEEE-
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeC-------------------CchHHHHHHHHHHHHHHhcCCeEEEE-
Confidence            3689999999999999999999885 57888873                   2245554444444332   4455554 


Q ss_pred             ccCCCCCcchHhhcccccEEEEccCC
Q 008516           88 HANVKDPKFNVEFFKQFNVVLNGLDN  113 (563)
Q Consensus        88 ~~~i~~~~~~~~~~~~~dvVi~alDn  113 (563)
                       +.       .+-++++|+||.+...
T Consensus        65 -~~-------~~a~~~aDvVii~ag~   82 (318)
T 1ez4_A           65 -GE-------YSDCKDADLVVITAGA   82 (318)
T ss_dssp             -CC-------GGGGTTCSEEEECCCC
T ss_pred             -CC-------HHHhCCCCEEEECCCC
Confidence             11       2348899999998753

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=93.30  E-value=0.14  Score=51.82  Aligned_cols=81  Identities=17%  Similarity=0.215  Sum_probs=53.7

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      +.+++|+|.| .||||.++++.|+..|. ++.++|.+                   ..|.+.+.+.+....++.++..+.
T Consensus         6 l~~k~vlVTGas~gIG~~la~~l~~~G~-~Vv~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~~   65 (319)
T 3ioy_A            6 FAGRTAFVTGGANGVGIGLVRQLLNQGC-KVAIADIR-------------------QDSIDKALATLEAEGSGPEVMGVQ   65 (319)
T ss_dssp             CTTCEEEEETTTSTHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHHTCGGGEEEEE
T ss_pred             CCCCEEEEcCCchHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCCCCeEEEEE
Confidence            4567899998 58999999999999997 57777643                   234555556666555555666666


Q ss_pred             cCCCCCcchHhhc-------ccccEEEEc
Q 008516           89 ANVKDPKFNVEFF-------KQFNVVLNG  110 (563)
Q Consensus        89 ~~i~~~~~~~~~~-------~~~dvVi~a  110 (563)
                      .++++...-..++       .+.|+||++
T Consensus        66 ~Dl~~~~~v~~~~~~~~~~~g~id~lv~n   94 (319)
T 3ioy_A           66 LDVASREGFKMAADEVEARFGPVSILCNN   94 (319)
T ss_dssp             CCTTCHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCCCEEEEC
Confidence            6665432212222       355777774

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=93.29  E-value=0.34  Score=49.47  Aligned_cols=34  Identities=26%  Similarity=0.493  Sum_probs=29.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ..||.|+|+|.+|..++..|+..|...+.++|.|
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~   37 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIV   37 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCC
Confidence            3589999999999999999999998559998844

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=93.28  E-value=0.26  Score=49.65  Aligned_cols=33  Identities=21%  Similarity=0.310  Sum_probs=28.8

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ...+|.|||+|.+|..++++|+..|. +++++|.
T Consensus         8 ~~~~IgiIG~G~mG~~~A~~l~~~G~-~V~~~dr   40 (306)
T 3l6d_A            8 FEFDVSVIGLGAMGTIMAQVLLKQGK-RVAIWNR   40 (306)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHTTC-CEEEECS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            45789999999999999999999997 5777763

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=93.25  E-value=0.21  Score=48.58  Aligned_cols=35  Identities=20%  Similarity=0.387  Sum_probs=29.6

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .+.+++++|.| .||||.++++.|+..|. ++.++|.
T Consensus        11 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r   46 (260)
T 2zat_A           11 PLENKVALVTASTDGIGLAIARRLAQDGA-HVVVSSR   46 (260)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            46678888887 68999999999999997 6887764

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=93.24  E-value=0.42  Score=47.87  Aligned_cols=108  Identities=16%  Similarity=0.290  Sum_probs=62.0

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHh---CC--CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEE
Q 008516           13 AKVLMVG-AGGIGCELLKTLALS---GF--QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITA   86 (563)
Q Consensus        13 ~~VlvvG-aGgiG~ellknLal~---Gv--g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~   86 (563)
                      ++|+|.| .|+||..+++.|+..   |+  .+++++|...-. .+.  .                  .+..+...-+++.
T Consensus         1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~-~~~--~------------------~~~~~~~~~~~~~   59 (337)
T 1r6d_A            1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYA-GNR--A------------------NLAPVDADPRLRF   59 (337)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTT-CCG--G------------------GGGGGTTCTTEEE
T ss_pred             CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCcc-Cch--h------------------hhhhcccCCCeEE
Confidence            3799998 599999999999996   53  478887753210 000  0                  0011111124555


Q ss_pred             eccCCCCCcchHhhcccccEEEEccCC-----------------HHHHHHHHHHHHhcCC-CEEEecccccee
Q 008516           87 HHANVKDPKFNVEFFKQFNVVLNGLDN-----------------LDARRHVNRLCLAADV-PLVESGTTGFLG  141 (563)
Q Consensus        87 ~~~~i~~~~~~~~~~~~~dvVi~alDn-----------------~~ar~~in~~c~~~~~-pli~~gt~G~~G  141 (563)
                      +..++++...-.+.+.++|+||.+...                 ...-..+-+.|...++ .+|..++.+.+|
T Consensus        60 ~~~Dl~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~~~v~~SS~~vyg  132 (337)
T 1r6d_A           60 VHGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYG  132 (337)
T ss_dssp             EECCTTCHHHHHHHTTTCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGC
T ss_pred             EEcCCCCHHHHHHHhcCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchHHhC
Confidence            566665433233556788999886421                 1122344556676665 677777665544

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=93.24  E-value=0.58  Score=46.25  Aligned_cols=100  Identities=18%  Similarity=0.197  Sum_probs=60.7

Q ss_pred             CCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           12 GAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        12 ~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      .++|+|.|+ |.+|..+++.|...|. ++++++.+.-              .-...|++.+. .+.  .++  ++.+..+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~--------------~~~~~~~~~~~-~~~--~~~--~~~~~~D   63 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGH-PTYVLFRPEV--------------VSNIDKVQMLL-YFK--QLG--AKLIEAS   63 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCSCC--------------SSCHHHHHHHH-HHH--TTT--CEEECCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC-cEEEEECCCc--------------ccchhHHHHHH-HHH--hCC--eEEEeCC
Confidence            468999995 9999999999999995 5777653210              00012332221 121  233  4445566


Q ss_pred             CCCCcchHhhcccccEEEEccC------CHHHHHHHHHHHHhcC-CCE
Q 008516           91 VKDPKFNVEFFKQFNVVLNGLD------NLDARRHVNRLCLAAD-VPL  131 (563)
Q Consensus        91 i~~~~~~~~~~~~~dvVi~alD------n~~ar~~in~~c~~~~-~pl  131 (563)
                      +++...-.+.++++|+||++..      |...-..+-+.|.+.+ +..
T Consensus        64 ~~d~~~l~~~~~~~d~vi~~a~~~~~~~~~~~~~~l~~aa~~~g~v~~  111 (313)
T 1qyd_A           64 LDDHQRLVDALKQVDVVISALAGGVLSHHILEQLKLVEAIKEAGNIKR  111 (313)
T ss_dssp             SSCHHHHHHHHTTCSEEEECCCCSSSSTTTTTHHHHHHHHHHSCCCSE
T ss_pred             CCCHHHHHHHHhCCCEEEECCccccchhhHHHHHHHHHHHHhcCCCce
Confidence            6543333466789999999653      3444455666777776 543

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=93.23  E-value=0.11  Score=51.28  Aligned_cols=32  Identities=28%  Similarity=0.543  Sum_probs=26.3

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516           13 AKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDT   46 (563)
Q Consensus        13 ~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~   46 (563)
                      ++|+|.|+ |.+|..+++.|. .|. +++.+|.+.
T Consensus         1 m~ilVtGatG~iG~~l~~~L~-~g~-~V~~~~r~~   33 (299)
T 1n2s_A            1 MNILLFGKTGQVGWELQRSLA-PVG-NLIALDVHS   33 (299)
T ss_dssp             CEEEEECTTSHHHHHHHHHTT-TTS-EEEEECTTC
T ss_pred             CeEEEECCCCHHHHHHHHHhh-cCC-eEEEecccc
Confidence            37999996 999999999999 784 688777543

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=93.22  E-value=0.32  Score=48.52  Aligned_cols=32  Identities=31%  Similarity=0.534  Sum_probs=26.9

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        13 ~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ++|+|.| .|.||..+++.|+..|. +++++|..
T Consensus         2 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   34 (330)
T 2c20_A            2 NSILICGGAGYIGSHAVKKLVDEGL-SVVVVDNL   34 (330)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            4799998 59999999999999995 67777643

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=93.22  E-value=0.39  Score=48.60  Aligned_cols=74  Identities=16%  Similarity=0.192  Sum_probs=49.3

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHh----hCCCceEEEec
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLK----FRPQMSITAHH   88 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~----~np~v~I~~~~   88 (563)
                      .||.|+|+|.+|..++..|+..|.-.++++|.+.                   .|++..+..+.+    .....++....
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~-------------------~~~~g~~~dl~~~~~~~~~~~~i~~t~   63 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE-------------------GVPQGKALDLYEASPIEGFDVRVTGTN   63 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS-------------------SHHHHHHHHHHTTHHHHTCCCCEEEES
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc-------------------cHHHHHHHhHHHhHhhcCCCeEEEECC
Confidence            6899999999999999999999974599988542                   122222222222    23345555432


Q ss_pred             cCCCCCcchHhhcccccEEEEccCC
Q 008516           89 ANVKDPKFNVEFFKQFNVVLNGLDN  113 (563)
Q Consensus        89 ~~i~~~~~~~~~~~~~dvVi~alDn  113 (563)
                      +      +  +-++++|+||.+...
T Consensus        64 d------~--~a~~~aD~Vi~a~g~   80 (309)
T 1ur5_A           64 N------Y--ADTANSDVIVVTSGA   80 (309)
T ss_dssp             C------G--GGGTTCSEEEECCCC
T ss_pred             C------H--HHHCCCCEEEEcCCC
Confidence            1      1  347899999998754

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=93.21  E-value=0.21  Score=48.59  Aligned_cols=34  Identities=29%  Similarity=0.446  Sum_probs=29.3

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +++++++|.| .||||.++++.|+..|. ++.++|.
T Consensus         5 ~~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r   39 (252)
T 3h7a_A            5 PRNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRR   39 (252)
T ss_dssp             CCSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            5678899998 67999999999999997 6888774

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=93.19  E-value=0.27  Score=47.46  Aligned_cols=34  Identities=26%  Similarity=0.439  Sum_probs=28.9

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +++++|+|.| .||||.++++.|+..|. ++.++|.
T Consensus        11 l~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r   45 (260)
T 3awd_A           11 LDNRVAIVTGGAQNIGLACVTALAEAGA-RVIIADL   45 (260)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            5678899998 68999999999999996 6888763

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=93.18  E-value=0.19  Score=51.37  Aligned_cols=35  Identities=31%  Similarity=0.428  Sum_probs=31.6

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +..||.|+|+|.+|+.++..|+..|+++++++|.+
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~   41 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP   41 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            45689999999999999999999999889999854

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=93.16  E-value=0.11  Score=50.97  Aligned_cols=98  Identities=17%  Similarity=0.185  Sum_probs=61.4

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHh--CCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           13 AKVLMVGA-GGIGCELLKTLALS--GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        13 ~~VlvvGa-GgiG~ellknLal~--Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      ++|+|.|+ |.+|..+++.|...  |. ++++++.+.   +                ++..    +..  +.  ++.+..
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r~~---~----------------~~~~----l~~--~~--~~~~~~   52 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPAS-QIIAIVRNV---E----------------KAST----LAD--QG--VEVRHG   52 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGG-GEEEEESCT---T----------------TTHH----HHH--TT--CEEEEC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCC-eEEEEEcCH---H----------------HHhH----Hhh--cC--CeEEEe
Confidence            47999996 99999999999988  74 677776421   0                1111    111  22  334555


Q ss_pred             CCCCCcchHhhcccccEEEEccC-------CHHHHHHHHHHHHhcCC-CEEEecccc
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGLD-------NLDARRHVNRLCLAADV-PLVESGTTG  138 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~alD-------n~~ar~~in~~c~~~~~-pli~~gt~G  138 (563)
                      ++++...-.+.++++|+||.+..       |...-..+-+.|.+.++ .+|..++.+
T Consensus        53 D~~d~~~l~~~~~~~d~vi~~a~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~  109 (287)
T 2jl1_A           53 DYNQPESLQKAFAGVSKLLFISGPHYDNTLLIVQHANVVKAARDAGVKHIAYTGYAF  109 (287)
T ss_dssp             CTTCHHHHHHHTTTCSEEEECCCCCSCHHHHHHHHHHHHHHHHHTTCSEEEEEEETT
T ss_pred             ccCCHHHHHHHHhcCCEEEEcCCCCcCchHHHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence            66543333456778999998643       44444556667777775 566666554

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=93.15  E-value=0.26  Score=48.26  Aligned_cols=39  Identities=23%  Similarity=0.297  Sum_probs=27.7

Q ss_pred             HHHHHHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            5 RQLEAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         5 ~~q~kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ..+.++++++++|.| .||||.++++.|+..|. ++.++|.
T Consensus         4 ~~~~~~~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r   43 (276)
T 1mxh_A            4 TSHEASECPAAVITGGARRIGHSIAVRLHQQGF-RVVVHYR   43 (276)
T ss_dssp             -------CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             hhhhccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            345567788888887 68999999999999996 6777764

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=93.15  E-value=0.16  Score=49.27  Aligned_cols=77  Identities=14%  Similarity=0.229  Sum_probs=49.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCC---CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGF---QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gv---g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      ..||.|||+|.+|..+++.|+..|.   .+++++|.+                   ..|++.+++..     ++.+    
T Consensus         2 ~~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~-------------------~~~~~~~~~~~-----g~~~----   53 (247)
T 3gt0_A            2 DKQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLN-------------------TANLKNASEKY-----GLTT----   53 (247)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSC-------------------HHHHHHHHHHH-----CCEE----
T ss_pred             CCeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCC-------------------HHHHHHHHHHh-----CCEE----
Confidence            3689999999999999999999996   367777632                   22444333322     1221    


Q ss_pred             cCCCCCcchHhhcccccEEEEccCCHHHHHHHH
Q 008516           89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVN  121 (563)
Q Consensus        89 ~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in  121 (563)
                         .  ....+..++.|+|+.|+.....+..+.
T Consensus        54 ---~--~~~~e~~~~aDvVilav~~~~~~~v~~   81 (247)
T 3gt0_A           54 ---T--TDNNEVAKNADILILSIKPDLYASIIN   81 (247)
T ss_dssp             ---C--SCHHHHHHHCSEEEECSCTTTHHHHC-
T ss_pred             ---e--CChHHHHHhCCEEEEEeCHHHHHHHHH
Confidence               1  113456788999999996544444443

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=93.12  E-value=0.3  Score=48.19  Aligned_cols=101  Identities=19%  Similarity=0.275  Sum_probs=59.6

Q ss_pred             CCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           12 GAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        12 ~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      .++|+|.|+ |.+|..+++.|...|. ++++++.+.-..    +         ...|+..+. .+.  .++  ++.+..+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~l~R~~~~~----~---------~~~~~~~~~-~l~--~~~--v~~v~~D   64 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGH-PTFLLVRESTAS----S---------NSEKAQLLE-SFK--ASG--ANIVHGS   64 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCCCCTT----T---------THHHHHHHH-HHH--TTT--CEEECCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC-CEEEEECCcccc----c---------CHHHHHHHH-HHH--hCC--CEEEEec
Confidence            468999996 9999999999999994 566665321100    0         012332221 121  233  4445566


Q ss_pred             CCCCcchHhhcccccEEEEccCCH--HHHHHHHHHHHhcC-CCE
Q 008516           91 VKDPKFNVEFFKQFNVVLNGLDNL--DARRHVNRLCLAAD-VPL  131 (563)
Q Consensus        91 i~~~~~~~~~~~~~dvVi~alDn~--~ar~~in~~c~~~~-~pl  131 (563)
                      +++...-.+.+++.|+||++....  ..-..+-+.|.+.+ ++.
T Consensus        65 ~~d~~~l~~~~~~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~  108 (308)
T 1qyc_A           65 IDDHASLVEAVKNVDVVISTVGSLQIESQVNIIKAIKEVGTVKR  108 (308)
T ss_dssp             TTCHHHHHHHHHTCSEEEECCCGGGSGGGHHHHHHHHHHCCCSE
T ss_pred             cCCHHHHHHHHcCCCEEEECCcchhhhhHHHHHHHHHhcCCCce
Confidence            654333345678899999976532  22344556667666 543

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=93.12  E-value=0.24  Score=48.94  Aligned_cols=81  Identities=11%  Similarity=0.277  Sum_probs=50.9

Q ss_pred             HHHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEE
Q 008516            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITA   86 (563)
Q Consensus         8 ~kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~   86 (563)
                      -.|++++++|.| .||||.++++.|+..|. ++.++|.+.                   .+.+.+++.+....  .++..
T Consensus        29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~--~~~~~   86 (275)
T 4imr_A           29 FGLRGRTALVTGSSRGIGAAIAEGLAGAGA-HVILHGVKP-------------------GSTAAVQQRIIASG--GTAQE   86 (275)
T ss_dssp             HCCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESST-------------------TTTHHHHHHHHHTT--CCEEE
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCH-------------------HHHHHHHHHHHhcC--CeEEE
Confidence            346778888888 58999999999999997 687876421                   12233444444433  35556


Q ss_pred             eccCCCCCcchHhhc------ccccEEEEc
Q 008516           87 HHANVKDPKFNVEFF------KQFNVVLNG  110 (563)
Q Consensus        87 ~~~~i~~~~~~~~~~------~~~dvVi~a  110 (563)
                      +..++++...-..++      .+.|++|++
T Consensus        87 ~~~Dv~~~~~~~~~~~~~~~~g~iD~lvnn  116 (275)
T 4imr_A           87 LAGDLSEAGAGTDLIERAEAIAPVDILVIN  116 (275)
T ss_dssp             EECCTTSTTHHHHHHHHHHHHSCCCEEEEC
T ss_pred             EEecCCCHHHHHHHHHHHHHhCCCCEEEEC
Confidence            666665443223333      256777764

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=93.11  E-value=0.17  Score=51.17  Aligned_cols=35  Identities=20%  Similarity=0.312  Sum_probs=30.1

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~   46 (563)
                      .-.+|.|||+|.+|+.++++|+..|. +++++|.+.
T Consensus        20 ~m~~I~iIG~G~mG~~~A~~l~~~G~-~V~~~dr~~   54 (310)
T 3doj_A           20 HMMEVGFLGLGIMGKAMSMNLLKNGF-KVTVWNRTL   54 (310)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSG
T ss_pred             cCCEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence            34689999999999999999999997 788887543

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=93.06  E-value=0.34  Score=47.08  Aligned_cols=34  Identities=26%  Similarity=0.493  Sum_probs=28.8

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +.+++++|.| .||||.++++.|+..|. ++.++|.
T Consensus         7 l~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r   41 (260)
T 2ae2_A            7 LEGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSR   41 (260)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            5677899998 68999999999999996 6777764

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=93.06  E-value=0.11  Score=51.27  Aligned_cols=27  Identities=22%  Similarity=0.380  Sum_probs=24.0

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGF   36 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gv   36 (563)
                      ++.++|+|.| .|.||..+++.|...|.
T Consensus         4 ~~~~~vlVtGatG~iG~~l~~~L~~~g~   31 (319)
T 4b8w_A            4 FQSMRILVTGGSGLVGKAIQKVVADGAG   31 (319)
T ss_dssp             CCCCEEEEETCSSHHHHHHHHHHHTTTC
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHhcCC
Confidence            4578999999 59999999999999986

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=93.06  E-value=0.35  Score=51.76  Aligned_cols=125  Identities=13%  Similarity=0.177  Sum_probs=67.3

Q ss_pred             HcCCcEEEECC-cHHHHHHHHHHHHh---CCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEE
Q 008516           10 IKGAKVLMVGA-GGIGCELLKTLALS---GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSIT   85 (563)
Q Consensus        10 L~~~~VlvvGa-GgiG~ellknLal~---Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~   85 (563)
                      ...++|+|.|+ |+||.++++.|+..   | .++.+++...-....+.|.  -..-.-|.+  ... +...... .-+++
T Consensus        71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g-~~V~~l~R~~~~~~~~~~l--~~~~~~~~~--~~~-~~~~~~~-~~~v~  143 (478)
T 4dqv_A           71 PELRTVLLTGATGFLGRYLVLELLRRLDVD-GRLICLVRAESDEDARRRL--EKTFDSGDP--ELL-RHFKELA-ADRLE  143 (478)
T ss_dssp             SCCCEEEEECTTSHHHHHHHHHHHHHSCTT-CEEEEEECSSSHHHHHHHH--HGGGCSSCH--HHH-HHHHHHH-TTTEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhcCCCC-CEEEEEECCCCcHHHHHHH--HHHHHhcch--hhh-hhhhhhc-cCceE
Confidence            35678999995 99999999999998   4 3677776432111000000  000000000  000 0011111 13567


Q ss_pred             EeccCCCCCcc------hHhhcccccEEEEccC-------------CHHHHHHHHHHHHhcCC-CEEEecccccee
Q 008516           86 AHHANVKDPKF------NVEFFKQFNVVLNGLD-------------NLDARRHVNRLCLAADV-PLVESGTTGFLG  141 (563)
Q Consensus        86 ~~~~~i~~~~~------~~~~~~~~dvVi~alD-------------n~~ar~~in~~c~~~~~-pli~~gt~G~~G  141 (563)
                      .+..++++..+      -...+++.|+||++..             |...-..+-+.|...++ ++|..++.+.+|
T Consensus       144 ~v~~Dl~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS~~v~~  219 (478)
T 4dqv_A          144 VVAGDKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNAFPYHELFGPNVAGTAELIRIALTTKLKPFTYVSTADVGA  219 (478)
T ss_dssp             EEECCTTSGGGGCCHHHHHHHHHHCCEEEECCSSCSBSSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEEGGGGT
T ss_pred             EEEeECCCcccCCCHHHHHHHHcCCCEEEECccccCCcCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeehhhcC
Confidence            77777754321      2345678999998642             23334456667777664 788777765443

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=93.01  E-value=0.39  Score=46.34  Aligned_cols=33  Identities=33%  Similarity=0.439  Sum_probs=27.6

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .||.|||+|.+|..++++|...|+.-..+.|.+
T Consensus         1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~   33 (236)
T 2dc1_A            1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVR   33 (236)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecC
Confidence            379999999999999999998887544677755

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=93.00  E-value=0.19  Score=50.05  Aligned_cols=32  Identities=19%  Similarity=0.351  Sum_probs=26.2

Q ss_pred             cCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEe
Q 008516           11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        11 ~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      .+++|+|.| .|.||..+++.|...|. ++++++
T Consensus         2 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~v~~~~   34 (321)
T 1e6u_A            2 AKQRVFIAGHRGMVGSAIRRQLEQRGD-VELVLR   34 (321)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTT-EEEECC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCC-eEEEEe
Confidence            356899999 59999999999999886 455554

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=93.00  E-value=0.32  Score=49.74  Aligned_cols=74  Identities=24%  Similarity=0.310  Sum_probs=50.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCC-CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhh---CCCceEEEe
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKF---RPQMSITAH   87 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gv-g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~---np~v~I~~~   87 (563)
                      ..||.|+|+|.+|..++-.|+..|. .+|.++|-                   -..|++..+..+.+.   ...+++.+ 
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di-------------------~~~~~~g~~~dl~~~~~~~~~~~i~~-   68 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDI-------------------FKDKTKGDAIDLSNALPFTSPKKIYS-   68 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS-------------------CHHHHHHHHHHHHTTGGGSCCCEEEE-
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeC-------------------CchHhHHHHHHHHHHHHhcCCeEEEE-
Confidence            4689999999999999999998885 57888873                   223454434444433   24455553 


Q ss_pred             ccCCCCCcchHhhcccccEEEEccCC
Q 008516           88 HANVKDPKFNVEFFKQFNVVLNGLDN  113 (563)
Q Consensus        88 ~~~i~~~~~~~~~~~~~dvVi~alDn  113 (563)
                       +.       .+-++++|+||.+...
T Consensus        69 -~~-------~~a~~~aDvVii~ag~   86 (326)
T 2zqz_A           69 -AE-------YSDAKDADLVVITAGA   86 (326)
T ss_dssp             -CC-------GGGGGGCSEEEECCCC
T ss_pred             -CC-------HHHhCCCCEEEEcCCC
Confidence             11       2348999999998653

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=93.00  E-value=0.17  Score=49.04  Aligned_cols=35  Identities=31%  Similarity=0.540  Sum_probs=29.8

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +|++++++|.| .||||.++++.|+..|. ++.++|.
T Consensus         3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~-~V~~~~r   38 (247)
T 3rwb_A            3 RLAGKTALVTGAAQGIGKAIAARLAADGA-TVIVSDI   38 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CcCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            47788999998 58999999999999997 5777664

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=92.99  E-value=0.2  Score=48.85  Aligned_cols=63  Identities=16%  Similarity=0.336  Sum_probs=44.2

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      .+.+++|+|.| .||||.++++.|+..|. ++.++|.+                   ..+.+.+.+.+.+..  .++..+
T Consensus        26 ~l~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~-------------------~~~~~~~~~~~~~~~--~~~~~~   83 (262)
T 3rkr_A           26 SLSGQVAVVTGASRGIGAAIARKLGSLGA-RVVLTARD-------------------VEKLRAVEREIVAAG--GEAESH   83 (262)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTT--CEEEEE
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHHhC--CceeEE
Confidence            35677899998 58999999999999997 57777643                   234555555665543  356666


Q ss_pred             ccCCCC
Q 008516           88 HANVKD   93 (563)
Q Consensus        88 ~~~i~~   93 (563)
                      ..++++
T Consensus        84 ~~D~~~   89 (262)
T 3rkr_A           84 ACDLSH   89 (262)
T ss_dssp             ECCTTC
T ss_pred             EecCCC
Confidence            666654

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=92.97  E-value=0.53  Score=46.83  Aligned_cols=99  Identities=16%  Similarity=0.183  Sum_probs=58.8

Q ss_pred             CCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCC-chHHHHHHHHHHhhCCCceEEEecc
Q 008516           12 GAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVG-QSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        12 ~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diG-k~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      .++|+|.|+ |.+|..+++.|+..|. ++++++.+.-              +-. ..|++.+.+ +.  .++  ++.+..
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~--------------~~~~~~~~~~l~~-~~--~~~--v~~v~~   63 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSH-PTFIYARPLT--------------PDSTPSSVQLREE-FR--SMG--VTIIEG   63 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTC-CEEEEECCCC--------------TTCCHHHHHHHHH-HH--HTT--CEEEEC
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCC-cEEEEECCcc--------------cccChHHHHHHHH-hh--cCC--cEEEEe
Confidence            467999996 9999999999999995 6777664310              000 123322221 21  133  344555


Q ss_pred             CCCCCcchHhhcccccEEEEccCCH--HHHHHHHHHHHhcC-CC
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGLDNL--DARRHVNRLCLAAD-VP  130 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~alDn~--~ar~~in~~c~~~~-~p  130 (563)
                      ++++...-...+++.|+||++....  ..-..+-+.|.+.+ ++
T Consensus        64 D~~d~~~l~~a~~~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~  107 (321)
T 3c1o_A           64 EMEEHEKMVSVLKQVDIVISALPFPMISSQIHIINAIKAAGNIK  107 (321)
T ss_dssp             CTTCHHHHHHHHTTCSEEEECCCGGGSGGGHHHHHHHHHHCCCC
T ss_pred             cCCCHHHHHHHHcCCCEEEECCCccchhhHHHHHHHHHHhCCcc
Confidence            6654333346688999999976532  23334455666665 44

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=92.96  E-value=0.22  Score=49.09  Aligned_cols=35  Identities=17%  Similarity=0.362  Sum_probs=29.9

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .|++++++|.| .||||.++++.|+..|. ++.++|.
T Consensus        24 ~l~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r   59 (277)
T 4fc7_A           24 LLRDKVAFITGGGSGIGFRIAEIFMRHGC-HTVIASR   59 (277)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEES
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            46788899998 57999999999999998 7888764

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=92.96  E-value=0.25  Score=48.65  Aligned_cols=79  Identities=20%  Similarity=0.348  Sum_probs=50.5

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      +++++++|.| .||||.++++.|+..|. ++.++|.+                   ..+.+.+++.+....  .++..+.
T Consensus         2 l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~-------------------~~~~~~~~~~l~~~~--~~~~~~~   59 (264)
T 3tfo_A            2 VMDKVILITGASGGIGEGIARELGVAGA-KILLGARR-------------------QARIEAIATEIRDAG--GTALAQV   59 (264)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESS-------------------HHHHHHHHHHHHHTT--CEEEEEE
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcC--CcEEEEE
Confidence            3567788888 58999999999999997 57777633                   234555555665543  3566666


Q ss_pred             cCCCCCcchHhh-------cccccEEEEc
Q 008516           89 ANVKDPKFNVEF-------FKQFNVVLNG  110 (563)
Q Consensus        89 ~~i~~~~~~~~~-------~~~~dvVi~a  110 (563)
                      .++++...-..+       +.+.|++|++
T Consensus        60 ~Dv~d~~~v~~~~~~~~~~~g~iD~lVnn   88 (264)
T 3tfo_A           60 LDVTDRHSVAAFAQAAVDTWGRIDVLVNN   88 (264)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             cCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            666543222222       2356777774

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=92.95  E-value=0.24  Score=48.85  Aligned_cols=74  Identities=20%  Similarity=0.205  Sum_probs=47.8

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK   92 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~   92 (563)
                      .+|.|||+|.+|+.+++.|+. |. +++++|.+                   ..|++.+++.      ++.+.  .    
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~-~V~~~~~~-------------------~~~~~~~~~~------g~~~~--~----   48 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RF-PTLVWNRT-------------------FEKALRHQEE------FGSEA--V----   48 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TS-CEEEECSS-------------------THHHHHHHHH------HCCEE--C----
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CC-eEEEEeCC-------------------HHHHHHHHHC------CCccc--C----
Confidence            479999999999999999999 87 57777632                   1233333322      11111  1    


Q ss_pred             CCcchHhhcccccEEEEccCCHH-HHHHHHHH
Q 008516           93 DPKFNVEFFKQFNVVLNGLDNLD-ARRHVNRL  123 (563)
Q Consensus        93 ~~~~~~~~~~~~dvVi~alDn~~-ar~~in~~  123 (563)
                          ..+.+.++|+|+.++-+.. .+..+.++
T Consensus        49 ----~~~~~~~~D~vi~~v~~~~~~~~v~~~l   76 (289)
T 2cvz_A           49 ----PLERVAEARVIFTCLPTTREVYEVAEAL   76 (289)
T ss_dssp             ----CGGGGGGCSEEEECCSSHHHHHHHHHHH
T ss_pred             ----HHHHHhCCCEEEEeCCChHHHHHHHHHH
Confidence                1245678999999998765 44444433

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=92.95  E-value=0.29  Score=49.75  Aligned_cols=33  Identities=33%  Similarity=0.654  Sum_probs=28.6

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCC-CeEEEEeCC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMD   45 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gv-g~I~iiD~D   45 (563)
                      .||.|+|+|.+|+.++..|+..|. ++++++|.+
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~   34 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVD   34 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence            479999999999999999999995 478888743

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=92.94  E-value=0.45  Score=46.82  Aligned_cols=93  Identities=19%  Similarity=0.242  Sum_probs=56.7

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      .+++++++|.| .||||.++++.|+..|. ++.++|.+.-....+.    +.  .-...+.+.+++.+.+..  .++..+
T Consensus        12 ~l~gk~~lVTGas~gIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~--~~~~~~   82 (280)
T 3pgx_A           12 SLQGRVAFITGAARGQGRSHAVRLAAEGA-DIIACDICAPVSASVT----YA--PASPEDLDETARLVEDQG--RKALTR   82 (280)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCC----SC--CCCHHHHHHHHHHHHTTT--CCEEEE
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEecccccccccc----cc--ccCHHHHHHHHHHHHhcC--CeEEEE
Confidence            47788899998 68999999999999997 6888886432111111    10  112344555556565543  456666


Q ss_pred             ccCCCCCcchHhh-------cccccEEEEc
Q 008516           88 HANVKDPKFNVEF-------FKQFNVVLNG  110 (563)
Q Consensus        88 ~~~i~~~~~~~~~-------~~~~dvVi~a  110 (563)
                      ..++++...-.++       +.+.|++|++
T Consensus        83 ~~Dv~~~~~v~~~~~~~~~~~g~id~lvnn  112 (280)
T 3pgx_A           83 VLDVRDDAALRELVADGMEQFGRLDVVVAN  112 (280)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHCCCCEEEEC
T ss_pred             EcCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            6677543222222       2367888875

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=92.91  E-value=0.12  Score=50.64  Aligned_cols=31  Identities=32%  Similarity=0.559  Sum_probs=26.8

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           13 AKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        13 ~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ++|+|.|+ |.||..+++.|...|. +++.+|.
T Consensus         6 m~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r   37 (287)
T 3sc6_A            6 ERVIITGANGQLGKQLQEELNPEEY-DIYPFDK   37 (287)
T ss_dssp             EEEEEESTTSHHHHHHHHHSCTTTE-EEEEECT
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCC-EEEEecc
Confidence            48999995 9999999999999885 6777775

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=92.90  E-value=0.29  Score=49.03  Aligned_cols=79  Identities=20%  Similarity=0.271  Sum_probs=52.3

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      +.+++|+|.| .||||.++++.|+..|. ++.++|.+                   ..+.+.+++.+....  .++..+.
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~-------------------~~~~~~~~~~l~~~~--~~~~~~~   86 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARRGA-RLVLSDVD-------------------QPALEQAVNGLRGQG--FDAHGVV   86 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTT--CCEEEEE
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcC--CceEEEE
Confidence            5677899998 58999999999999997 57777643                   234455555555543  3556666


Q ss_pred             cCCCCCcchHhhc-------ccccEEEEc
Q 008516           89 ANVKDPKFNVEFF-------KQFNVVLNG  110 (563)
Q Consensus        89 ~~i~~~~~~~~~~-------~~~dvVi~a  110 (563)
                      .++++...-.+++       .+.|+||++
T Consensus        87 ~Dv~d~~~v~~~~~~~~~~~g~id~lvnn  115 (301)
T 3tjr_A           87 CDVRHLDEMVRLADEAFRLLGGVDVVFSN  115 (301)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSSCSEEEEC
T ss_pred             ccCCCHHHHHHHHHHHHHhCCCCCEEEEC
Confidence            6665432222232       367888875

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=92.89  E-value=0.12  Score=52.95  Aligned_cols=33  Identities=33%  Similarity=0.442  Sum_probs=29.8

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .||.|+|+|.+|..++..|+..|...++++|.|
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~   42 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVV   42 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            589999999999999999999998559999854

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=92.83  E-value=0.23  Score=48.58  Aligned_cols=80  Identities=15%  Similarity=0.231  Sum_probs=51.2

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      .|.+++++|.| .||||.++++.|+..|. ++.++|.+                   ..+.+.+++.+.+..  .++..+
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~-------------------~~~~~~~~~~~~~~~--~~~~~~   65 (264)
T 3ucx_A            8 LLTDKVVVISGVGPALGTTLARRCAEQGA-DLVLAART-------------------VERLEDVAKQVTDTG--RRALSV   65 (264)
T ss_dssp             TTTTCEEEEESCCTTHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTT--CCEEEE
T ss_pred             CcCCcEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCC-------------------HHHHHHHHHHHHhcC--CcEEEE
Confidence            46788899998 57999999999999997 57777642                   234455555555443  345556


Q ss_pred             ccCCCCCcchHhh-------cccccEEEEc
Q 008516           88 HANVKDPKFNVEF-------FKQFNVVLNG  110 (563)
Q Consensus        88 ~~~i~~~~~~~~~-------~~~~dvVi~a  110 (563)
                      ..++++...-.++       +.+.|++|++
T Consensus        66 ~~Dv~~~~~v~~~~~~~~~~~g~id~lv~n   95 (264)
T 3ucx_A           66 GTDITDDAQVAHLVDETMKAYGRVDVVINN   95 (264)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred             EcCCCCHHHHHHHHHHHHHHcCCCcEEEEC
Confidence            6666543222222       2356777764

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=92.83  E-value=0.36  Score=46.64  Aligned_cols=34  Identities=29%  Similarity=0.505  Sum_probs=29.0

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +.+++++|.| .||||.++++.|+..|. ++.++|.
T Consensus         5 l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r   39 (247)
T 2jah_A            5 LQGKVALITGASSGIGEATARALAAEGA-AVAIAAR   39 (247)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            6678899998 68999999999999997 5777763

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=92.80  E-value=0.22  Score=48.48  Aligned_cols=80  Identities=21%  Similarity=0.340  Sum_probs=51.3

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      .|++++++|.| .||||.++++.|+..|. ++.++|.+                   ..+.+.+++.+++..+  ++..+
T Consensus         9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~-------------------~~~~~~~~~~~~~~~~--~~~~~   66 (256)
T 3gaf_A            9 HLNDAVAIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLK-------------------SEGAEAVAAAIRQAGG--KAIGL   66 (256)
T ss_dssp             CCTTCEEEECSCSSHHHHHHHHHHHHHTC-EEEEEESS-------------------HHHHHHHHHHHHHTTC--CEEEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHhcCC--cEEEE
Confidence            36678889988 68999999999999997 47777642                   2345555566655443  45556


Q ss_pred             ccCCCCCcchHhhc-------ccccEEEEc
Q 008516           88 HANVKDPKFNVEFF-------KQFNVVLNG  110 (563)
Q Consensus        88 ~~~i~~~~~~~~~~-------~~~dvVi~a  110 (563)
                      ..++++...-.+++       .+.|++|++
T Consensus        67 ~~Dv~d~~~v~~~~~~~~~~~g~id~lv~n   96 (256)
T 3gaf_A           67 ECNVTDEQHREAVIKAALDQFGKITVLVNN   96 (256)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             ECCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            66665432222222       356777764

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=92.78  E-value=0.32  Score=48.24  Aligned_cols=86  Identities=14%  Similarity=0.254  Sum_probs=52.8

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      +++++++|.| .||||.++++.|+..|. ++.++|.+.-....+.            .+.+.+++.+.+..  .++..+.
T Consensus         7 l~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~------------~~~~~~~~~~~~~~--~~~~~~~   71 (285)
T 3sc4_A            7 LRGKTMFISGGSRGIGLAIAKRVAADGA-NVALVAKSAEPHPKLP------------GTIYTAAKEIEEAG--GQALPIV   71 (285)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSC------------CCHHHHHHHHHHHT--SEEEEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECChhhhhhhh------------HHHHHHHHHHHhcC--CcEEEEE
Confidence            5678899998 58999999999999997 6888876543222221            12333444455543  3566666


Q ss_pred             cCCCCCcchHhhc-------ccccEEEEc
Q 008516           89 ANVKDPKFNVEFF-------KQFNVVLNG  110 (563)
Q Consensus        89 ~~i~~~~~~~~~~-------~~~dvVi~a  110 (563)
                      .++++...-.+++       .+.|++|++
T Consensus        72 ~Dv~~~~~v~~~~~~~~~~~g~id~lvnn  100 (285)
T 3sc4_A           72 GDIRDGDAVAAAVAKTVEQFGGIDICVNN  100 (285)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHSCCSEEEEC
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            6665432222222       256666664

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=92.78  E-value=0.2  Score=48.44  Aligned_cols=34  Identities=24%  Similarity=0.307  Sum_probs=27.6

Q ss_pred             cCCcEEEEC-CcHHHHHHHHHHHH-hCCCeEEEEeCC
Q 008516           11 KGAKVLMVG-AGGIGCELLKTLAL-SGFQDIHIIDMD   45 (563)
Q Consensus        11 ~~~~VlvvG-aGgiG~ellknLal-~Gvg~I~iiD~D   45 (563)
                      ++++|+|.| .||||.++++.|+. .|. ++.++|.+
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~-~V~~~~r~   38 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARD   38 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCC-eEEEEeCC
Confidence            356788887 69999999999999 897 67777643

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=92.76  E-value=0.6  Score=46.00  Aligned_cols=103  Identities=13%  Similarity=0.122  Sum_probs=60.7

Q ss_pred             CCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           12 GAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        12 ~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      .++|+|.|+ |++|..+++.|...|-.++++++.+.-                 +.++    +.+..  +++  +....+
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~-----------------~~~~----~~l~~--~~~--~~~~~D   59 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPR-----------------KKAA----KELRL--QGA--EVVQGD   59 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTT-----------------SHHH----HHHHH--TTC--EEEECC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCC-----------------CHHH----HHHHH--CCC--EEEEec
Confidence            468999997 999999999999988336777653310                 1111    11221  233  445556


Q ss_pred             CCCCcchHhhcccccEEEEccCCH---------HHHHHHHHHHHhcCC-CEEEeccccc
Q 008516           91 VKDPKFNVEFFKQFNVVLNGLDNL---------DARRHVNRLCLAADV-PLVESGTTGF  139 (563)
Q Consensus        91 i~~~~~~~~~~~~~dvVi~alDn~---------~ar~~in~~c~~~~~-pli~~gt~G~  139 (563)
                      +++...-...+++.|+||++....         ..-..+-+.|.+.++ .+|.+++.+.
T Consensus        60 ~~d~~~l~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~aa~~~gv~~iv~~S~~~~  118 (299)
T 2wm3_A           60 QDDQVIMELALNGAYATFIVTNYWESCSQEQEVKQGKLLADLARRLGLHYVVYSGLENI  118 (299)
T ss_dssp             TTCHHHHHHHHTTCSEEEECCCHHHHTCHHHHHHHHHHHHHHHHHHTCSEEEECCCCCH
T ss_pred             CCCHHHHHHHHhcCCEEEEeCCCCccccchHHHHHHHHHHHHHHHcCCCEEEEEcCccc
Confidence            654333345678899999976421         122233445666665 3566555443

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=92.76  E-value=0.21  Score=51.55  Aligned_cols=78  Identities=15%  Similarity=0.181  Sum_probs=51.6

Q ss_pred             HcCCcEEEECC-cHHHHHHHHHHHHhCC-CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhh-CCCceEEE
Q 008516           10 IKGAKVLMVGA-GGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKF-RPQMSITA   86 (563)
Q Consensus        10 L~~~~VlvvGa-GgiG~ellknLal~Gv-g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~-np~v~I~~   86 (563)
                      +...||.|+|+ |.+|+.++-.++..|. .++.++|.+                   +.|++..+.-+.+. .|..++..
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~-------------------~~k~~g~a~DL~~~~~~~~~i~~   66 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPF-------------------AVGLEGVAEEIRHCGFEGLNLTF   66 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSC-------------------HHHHHHHHHHHHHHCCTTCCCEE
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCC-------------------chhHHHHHHhhhhCcCCCCceEE
Confidence            46789999997 9999999999999997 579998842                   23555444444432 23223322


Q ss_pred             eccCCCCCcchHhhcccccEEEEccCC
Q 008516           87 HHANVKDPKFNVEFFKQFNVVLNGLDN  113 (563)
Q Consensus        87 ~~~~i~~~~~~~~~~~~~dvVi~alDn  113 (563)
                      .     .  ...+-++++|+||.+...
T Consensus        67 t-----~--d~~~al~dADvVvitaG~   86 (343)
T 3fi9_A           67 T-----S--DIKEALTDAKYIVSSGGA   86 (343)
T ss_dssp             E-----S--CHHHHHTTEEEEEECCC-
T ss_pred             c-----C--CHHHHhCCCCEEEEccCC
Confidence            1     1  123457899999987653

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=92.75  E-value=0.26  Score=47.92  Aligned_cols=36  Identities=31%  Similarity=0.572  Sum_probs=30.2

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ++++++++|.| .||||.++++.|+..|. ++.++|.+
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   41 (259)
T 4e6p_A            5 RLEGKSALITGSARGIGRAFAEAYVREGA-TVAIADID   41 (259)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            46778899998 68999999999999997 57787743

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=92.75  E-value=0.33  Score=48.10  Aligned_cols=35  Identities=26%  Similarity=0.486  Sum_probs=29.3

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .|++++++|.| .||||.++++.|+..|. ++.++|.
T Consensus        22 ~l~~k~~lVTGas~GIG~~ia~~la~~G~-~V~~~~r   57 (281)
T 3v2h_A           22 SMMTKTAVITGSTSGIGLAIARTLAKAGA-NIVLNGF   57 (281)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEECC
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            46677899998 68999999999999997 6777764

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=92.72  E-value=0.35  Score=47.53  Aligned_cols=93  Identities=16%  Similarity=0.184  Sum_probs=56.7

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      ++.+++++|.| .||||.++++.|+..|. ++.++|.+.-..+.+.+.    .  -...+.+.+.+.+...+  .++..+
T Consensus         8 ~l~~k~~lVTGas~GIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~--~~~~~~   78 (277)
T 3tsc_A            8 KLEGRVAFITGAARGQGRAHAVRMAAEGA-DIIAVDIAGKLPSCVPYD----P--ASPDDLSETVRLVEAAN--RRIVAA   78 (277)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSC----C--CCHHHHHHHHHHHHHTT--CCEEEE
T ss_pred             ccCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEecccccccccccc----c--cCHHHHHHHHHHHHhcC--CeEEEE
Confidence            57788899998 58999999999999998 688888643222222111    0  12234444555555544  356666


Q ss_pred             ccCCCCCcchHhh-------cccccEEEEc
Q 008516           88 HANVKDPKFNVEF-------FKQFNVVLNG  110 (563)
Q Consensus        88 ~~~i~~~~~~~~~-------~~~~dvVi~a  110 (563)
                      ..++++...-..+       +.+.|++|++
T Consensus        79 ~~D~~~~~~v~~~~~~~~~~~g~id~lvnn  108 (277)
T 3tsc_A           79 VVDTRDFDRLRKVVDDGVAALGRLDIIVAN  108 (277)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             ECCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            6666543222222       2457888874

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=92.71  E-value=0.39  Score=47.99  Aligned_cols=36  Identities=25%  Similarity=0.321  Sum_probs=27.8

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +-.+++|||.| .|+||..+++.|...|. +++++|.+
T Consensus        11 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~   47 (335)
T 1rpn_A           11 GSMTRSALVTGITGQDGAYLAKLLLEKGY-RVHGLVAR   47 (335)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             cccCCeEEEECCCChHHHHHHHHHHHCCC-eEEEEeCC
Confidence            44678999998 59999999999999995 78887753

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=92.70  E-value=0.38  Score=45.91  Aligned_cols=33  Identities=18%  Similarity=0.246  Sum_probs=27.8

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCC------eEEEEeC
Q 008516           12 GAKVLMVG-AGGIGCELLKTLALSGFQ------DIHIIDM   44 (563)
Q Consensus        12 ~~~VlvvG-aGgiG~ellknLal~Gvg------~I~iiD~   44 (563)
                      +++|+|.| .||||.++++.|+..|..      ++.++|.
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r   41 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSR   41 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEES
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeC
Confidence            45788998 689999999999999985      6777764

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=92.57  E-value=0.26  Score=48.30  Aligned_cols=63  Identities=24%  Similarity=0.342  Sum_probs=42.0

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      +.+++|+|.| .||||.++++.|+..|. ++.+++.+.                  ..+.+.+++.+++..  .++..+.
T Consensus        27 l~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~~--~~~~~~~   85 (271)
T 4iin_A           27 FTGKNVLITGASKGIGAEIAKTLASMGL-KVWINYRSN------------------AEVADALKNELEEKG--YKAAVIK   85 (271)
T ss_dssp             CSCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSC------------------HHHHHHHHHHHHHTT--CCEEEEE
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCC------------------HHHHHHHHHHHHhcC--CceEEEE
Confidence            5677889988 58999999999999998 577766321                  233445555555543  3455555


Q ss_pred             cCCCC
Q 008516           89 ANVKD   93 (563)
Q Consensus        89 ~~i~~   93 (563)
                      .++++
T Consensus        86 ~D~~~   90 (271)
T 4iin_A           86 FDAAS   90 (271)
T ss_dssp             CCTTC
T ss_pred             CCCCC
Confidence            55543

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=92.56  E-value=0.22  Score=48.35  Aligned_cols=64  Identities=17%  Similarity=0.260  Sum_probs=46.1

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHH---hCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEE
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLAL---SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSIT   85 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal---~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~   85 (563)
                      |++++++|.| .||||.++++.|+.   .|. ++.++|.+.                   .+.+.+++.+.+.+|..++.
T Consensus         4 l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~-~V~~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~   63 (259)
T 1oaa_A            4 LGCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSE-------------------SMLRQLKEELGAQQPDLKVV   63 (259)
T ss_dssp             CBSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCH-------------------HHHHHHHHHHHHHCTTSEEE
T ss_pred             CCCcEEEEeCCCChHHHHHHHHHHHhhcCCC-eEEEEeCCH-------------------HHHHHHHHHHHhhCCCCeEE
Confidence            5667788887 68999999999998   786 677776321                   34555566666666666777


Q ss_pred             EeccCCCC
Q 008516           86 AHHANVKD   93 (563)
Q Consensus        86 ~~~~~i~~   93 (563)
                      .+..++++
T Consensus        64 ~~~~Dv~~   71 (259)
T 1oaa_A           64 LAAADLGT   71 (259)
T ss_dssp             EEECCTTS
T ss_pred             EEecCCCC
Confidence            77777754

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=92.55  E-value=0.35  Score=49.71  Aligned_cols=78  Identities=14%  Similarity=0.239  Sum_probs=53.3

Q ss_pred             HHHcCCcEEEECCcHHHHHHHHHHHHhCC-CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC---CCce
Q 008516            8 EAIKGAKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR---PQMS   83 (563)
Q Consensus         8 ~kL~~~~VlvvGaGgiG~ellknLal~Gv-g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~n---p~v~   83 (563)
                      ......||.|+|+|.+|+.++-.|+..|. .++.++|.+                   ..|++..+.-+.+..   +..+
T Consensus        15 ~~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~-------------------~~~~~g~a~DL~~~~~~~~~~~   75 (331)
T 4aj2_A           15 EQVPQNKITVVGVGAVGMACAISILMKDLADELALVDVI-------------------EDKLKGEMMDLQHGSLFLKTPK   75 (331)
T ss_dssp             --CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC-------------------HHHHHHHHHHHHHTGGGCSCCE
T ss_pred             ccCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCC-------------------hHHHHHHHHhhhhhhhccCCCe
Confidence            35567899999999999999999999997 479998732                   356666666666543   2223


Q ss_pred             EEEeccCCCCCcchHhhcccccEEEEccC
Q 008516           84 ITAHHANVKDPKFNVEFFKQFNVVLNGLD  112 (563)
Q Consensus        84 I~~~~~~i~~~~~~~~~~~~~dvVi~alD  112 (563)
                      +... .     .+  +-++++|+||.+..
T Consensus        76 i~~~-~-----d~--~~~~~aDiVvi~aG   96 (331)
T 4aj2_A           76 IVSS-K-----DY--SVTANSKLVIITAG   96 (331)
T ss_dssp             EEEC-S-----SG--GGGTTEEEEEECCS
T ss_pred             EEEc-C-----CH--HHhCCCCEEEEccC
Confidence            3221 1     12  34899999988743

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=92.55  E-value=0.31  Score=46.76  Aligned_cols=35  Identities=29%  Similarity=0.528  Sum_probs=29.4

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +.+++|+|.| .|+||.++++.|+..|. ++.++|.+
T Consensus         5 l~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~   40 (258)
T 3afn_B            5 LKGKRVLITGSSQGIGLATARLFARAGA-KVGLHGRK   40 (258)
T ss_dssp             GTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEECCC
Confidence            6778899998 58999999999999997 57777643

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=92.54  E-value=0.35  Score=46.03  Aligned_cols=78  Identities=18%  Similarity=0.315  Sum_probs=49.4

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        12 ~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      .++++|.| .||||.++++.|+..|. ++.++|.+.                   .+.+.+++.+.+.. ..++..+..+
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~-~~~~~~~~~D   60 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGY-ALALGARSV-------------------DRLEKIAHELMQEQ-GVEVFYHHLD   60 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHHH-CCCEEEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhhc-CCeEEEEEec
Confidence            45788888 58999999999999997 477776431                   34444445544222 3456666667


Q ss_pred             CCCCcchHhhc-------ccccEEEEc
Q 008516           91 VKDPKFNVEFF-------KQFNVVLNG  110 (563)
Q Consensus        91 i~~~~~~~~~~-------~~~dvVi~a  110 (563)
                      +++...-.+++       .+.|++|++
T Consensus        61 ~~~~~~v~~~~~~~~~~~g~id~li~~   87 (235)
T 3l77_A           61 VSKAESVEEFSKKVLERFGDVDVVVAN   87 (235)
T ss_dssp             TTCHHHHHHHCC-HHHHHSSCSEEEEC
T ss_pred             cCCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence            75432222333       367888775

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=92.52  E-value=0.35  Score=47.93  Aligned_cols=35  Identities=23%  Similarity=0.342  Sum_probs=28.3

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .+.++.++|.| .||||.++++.|+..|. ++.++|.
T Consensus        25 ~~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r   60 (283)
T 3v8b_A           25 NQPSPVALITGAGSGIGRATALALAADGV-TVGALGR   60 (283)
T ss_dssp             --CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            35667888998 68999999999999997 6777774

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=92.52  E-value=0.67  Score=47.51  Aligned_cols=33  Identities=30%  Similarity=0.486  Sum_probs=27.6

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHH-HhCCCeEEEEeCC
Q 008516           12 GAKVLMVG-AGGIGCELLKTLA-LSGFQDIHIIDMD   45 (563)
Q Consensus        12 ~~~VlvvG-aGgiG~ellknLa-l~Gvg~I~iiD~D   45 (563)
                      +++|+|.| .|+||..+++.|+ ..|. +++++|..
T Consensus         2 ~m~vlVTGatG~iG~~l~~~L~~~~g~-~V~~~~r~   36 (397)
T 1gy8_A            2 HMRVLVCGGAGYIGSHFVRALLRDTNH-SVVIVDSL   36 (397)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCC-EEEEEECC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHhCCC-EEEEEecC
Confidence            45899998 5999999999999 9985 68777743

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=92.51  E-value=0.47  Score=46.91  Aligned_cols=80  Identities=19%  Similarity=0.277  Sum_probs=50.9

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      +.+++++|.| .||||.++++.|+..|. ++.++|..                  ...+.+.+++.+....  .++..+.
T Consensus        27 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~------------------~~~~~~~~~~~~~~~~--~~~~~~~   85 (280)
T 4da9_A           27 KARPVAIVTGGRRGIGLGIARALAASGF-DIAITGIG------------------DAEGVAPVIAELSGLG--ARVIFLR   85 (280)
T ss_dssp             CCCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC------------------CHHHHHHHHHHHHHTT--CCEEEEE
T ss_pred             cCCCEEEEecCCCHHHHHHHHHHHHCCC-eEEEEeCC------------------CHHHHHHHHHHHHhcC--CcEEEEE
Confidence            4566788888 58999999999999997 57777631                  1134445555555543  3566666


Q ss_pred             cCCCCCcchHhhc-------ccccEEEEc
Q 008516           89 ANVKDPKFNVEFF-------KQFNVVLNG  110 (563)
Q Consensus        89 ~~i~~~~~~~~~~-------~~~dvVi~a  110 (563)
                      .++++...-..++       .+.|+||++
T Consensus        86 ~Dv~d~~~v~~~~~~~~~~~g~iD~lvnn  114 (280)
T 4da9_A           86 ADLADLSSHQATVDAVVAEFGRIDCLVNN  114 (280)
T ss_dssp             CCTTSGGGHHHHHHHHHHHHSCCCEEEEE
T ss_pred             ecCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            6775543223333       256777764

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=92.50  E-value=0.31  Score=47.44  Aligned_cols=34  Identities=26%  Similarity=0.507  Sum_probs=28.7

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +.+++++|.| .||||.++++.|+..|. ++.++|.
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r   39 (263)
T 3ai3_A            5 ISGKVAVITGSSSGIGLAIAEGFAKEGA-HIVLVAR   39 (263)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcC
Confidence            4567899998 58999999999999997 6777764

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=92.49  E-value=0.21  Score=49.24  Aligned_cols=80  Identities=21%  Similarity=0.313  Sum_probs=49.5

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      .|.+++++|.| .||||.++++.|+..|. ++.++|.+                   ..+.+.+.+.+++..+  ++..+
T Consensus        23 ~l~gk~~lVTGas~gIG~aia~~la~~G~-~V~~~~r~-------------------~~~~~~~~~~l~~~~~--~~~~~   80 (271)
T 4ibo_A           23 DLGGRTALVTGSSRGLGRAMAEGLAVAGA-RILINGTD-------------------PSRVAQTVQEFRNVGH--DAEAV   80 (271)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSC-------------------HHHHHHHHHHHHHTTC--CEEEC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHhcCC--ceEEE
Confidence            35677888888 58999999999999997 57775532                   2344455555555433  45555


Q ss_pred             ccCCCCCcchHhhc-------ccccEEEEc
Q 008516           88 HANVKDPKFNVEFF-------KQFNVVLNG  110 (563)
Q Consensus        88 ~~~i~~~~~~~~~~-------~~~dvVi~a  110 (563)
                      ..++++...-.+++       .+.|+||++
T Consensus        81 ~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~n  110 (271)
T 4ibo_A           81 AFDVTSESEIIEAFARLDEQGIDVDILVNN  110 (271)
T ss_dssp             CCCTTCHHHHHHHHHHHHHHTCCCCEEEEC
T ss_pred             EcCCCCHHHHHHHHHHHHHHCCCCCEEEEC
Confidence            55664432222222       256776664

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=92.48  E-value=0.52  Score=46.28  Aligned_cols=36  Identities=22%  Similarity=0.446  Sum_probs=30.8

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDT   46 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~   46 (563)
                      +++++++|.| .||||.++++.|+..|. ++.++|.+.
T Consensus         4 l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~   40 (274)
T 3e03_A            4 LSGKTLFITGASRGIGLAIALRAARDGA-NVAIAAKSA   40 (274)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCC
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeccc
Confidence            5678899998 68999999999999997 788888654

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=92.48  E-value=0.35  Score=46.70  Aligned_cols=35  Identities=17%  Similarity=0.311  Sum_probs=29.3

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .+.+++|+|.| .||||.++++.|+..|. ++.++|.
T Consensus         4 ~l~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r   39 (261)
T 1gee_A            4 DLEGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYR   39 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEcC
Confidence            36778899987 78999999999999996 5777764

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=92.48  E-value=0.5  Score=46.37  Aligned_cols=92  Identities=21%  Similarity=0.158  Sum_probs=54.5

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      +|++++++|.| .||||.++++.|+..|. ++.++|.+.-.    .+.-   ...-...+.+.+.+.+....  .++..+
T Consensus         7 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~----~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~   76 (287)
T 3pxx_A            7 RVQDKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDICHDI----ETNE---YPLATSRDLEEAGLEVEKTG--RKAYTA   76 (287)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCC----TTSC---SCCCCHHHHHHHHHHHHHTT--SCEEEE
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcccccc----cccc---cchhhhHHHHHHHHHHHhcC--CceEEE
Confidence            46788899998 57999999999999997 58888754211    1110   00012234444555555543  456666


Q ss_pred             ccCCCCCcchHhhc-------ccccEEEEc
Q 008516           88 HANVKDPKFNVEFF-------KQFNVVLNG  110 (563)
Q Consensus        88 ~~~i~~~~~~~~~~-------~~~dvVi~a  110 (563)
                      ..++++...-.+++       .+.|+||++
T Consensus        77 ~~D~~~~~~v~~~~~~~~~~~g~id~lv~n  106 (287)
T 3pxx_A           77 EVDVRDRAAVSRELANAVAEFGKLDVVVAN  106 (287)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             EccCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            66665432222222       366777774

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=92.47  E-value=0.25  Score=53.27  Aligned_cols=36  Identities=17%  Similarity=0.361  Sum_probs=28.9

Q ss_pred             HHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         8 ~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ..+.+++|.|||+|.+|+.++++|+..|. ++++.|.
T Consensus        11 ~~~~~~~IgvIGlG~MG~~lA~~La~~G~-~V~v~~r   46 (480)
T 2zyd_A           11 HHMSKQQIGVVGMAVMGRNLALNIESRGY-TVSIFNR   46 (480)
T ss_dssp             ----CBSEEEECCSHHHHHHHHHHHTTTC-CEEEECS
T ss_pred             cccCCCeEEEEccHHHHHHHHHHHHhCCC-eEEEEeC
Confidence            45778999999999999999999999997 5777763

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=92.47  E-value=0.32  Score=48.25  Aligned_cols=31  Identities=29%  Similarity=0.463  Sum_probs=27.5

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .+|.|||+|.+|..+++.|+..|. +++++|.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~   36 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVSDR   36 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECS
T ss_pred             ceEEEECchHHHHHHHHHHHhCCC-EEEEEeC
Confidence            589999999999999999999996 5777763

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=92.44  E-value=0.27  Score=48.65  Aligned_cols=35  Identities=23%  Similarity=0.457  Sum_probs=29.9

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .|++++++|.| .||||.++++.|+..|. ++.++|.
T Consensus        29 ~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r   64 (276)
T 3r1i_A           29 DLSGKRALITGASTGIGKKVALAYAEAGA-QVAVAAR   64 (276)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            46778899998 68999999999999997 5888774

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=92.41  E-value=0.46  Score=48.39  Aligned_cols=74  Identities=14%  Similarity=0.200  Sum_probs=50.0

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCC-CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhh----CCCceEEEe
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKF----RPQMSITAH   87 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gv-g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~----np~v~I~~~   87 (563)
                      +||.|+|+|.+|..++..|+..|+ ++++++|.+.                   .|++..+.-+.+.    ...+++.+.
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~-------------------~k~~g~a~DL~~~~~~~~~~~~v~~~   61 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKD-------------------GMPQGKALDMRESSPIHGFDTRVTGT   61 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSST-------------------THHHHHHHHHHHHHHHHTCCCEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCch-------------------HHHHHHHHHHhccccccCCCcEEEEC
Confidence            479999999999999999999997 5899988432                   2333333333332    234566543


Q ss_pred             ccCCCCCcchHhhcccccEEEEccCC
Q 008516           88 HANVKDPKFNVEFFKQFNVVLNGLDN  113 (563)
Q Consensus        88 ~~~i~~~~~~~~~~~~~dvVi~alDn  113 (563)
                      .        +.+-++++|+||.+...
T Consensus        62 ~--------~~~a~~~aDvVii~ag~   79 (314)
T 3nep_X           62 N--------DYGPTEDSDVCIITAGL   79 (314)
T ss_dssp             S--------SSGGGTTCSEEEECCCC
T ss_pred             C--------CHHHhCCCCEEEECCCC
Confidence            1        12457899999998654

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=92.40  E-value=0.35  Score=47.97  Aligned_cols=83  Identities=20%  Similarity=0.294  Sum_probs=52.5

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC---CCceE
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR---PQMSI   84 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~n---p~v~I   84 (563)
                      +|.+++|+|.| .||||.++++.|+..|. ++.++|.+.                   .+.+.+++.+....   ...++
T Consensus        15 ~l~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~   74 (303)
T 1yxm_A           15 LLQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKL-------------------ERLKSAADELQANLPPTKQARV   74 (303)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHTSCTTCCCCE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhhccccCCccE
Confidence            46778899998 68999999999999996 577776421                   23344444444421   13456


Q ss_pred             EEeccCCCCCcchHhhc-------ccccEEEEcc
Q 008516           85 TAHHANVKDPKFNVEFF-------KQFNVVLNGL  111 (563)
Q Consensus        85 ~~~~~~i~~~~~~~~~~-------~~~dvVi~al  111 (563)
                      ..+..++++...-..++       .+.|+||++.
T Consensus        75 ~~~~~D~~~~~~v~~~~~~~~~~~g~id~li~~A  108 (303)
T 1yxm_A           75 IPIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNG  108 (303)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EEEecCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            66666665432222233       3578888753

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=92.37  E-value=0.18  Score=50.07  Aligned_cols=80  Identities=15%  Similarity=0.229  Sum_probs=49.9

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      ++.+++++|.| .||||.++++.|+..|. ++.++|.+.                   .+.+.+++.+.+  +..++..+
T Consensus         5 ~l~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~--~~~~~~~~   62 (280)
T 3tox_A            5 RLEGKIAIVTGASSGIGRAAALLFAREGA-KVVVTARNG-------------------NALAELTDEIAG--GGGEAAAL   62 (280)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECCSCH-------------------HHHHHHHHHHTT--TTCCEEEC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCH-------------------HHHHHHHHHHHh--cCCcEEEE
Confidence            46678888888 58999999999999997 577766431                   233444444433  23455666


Q ss_pred             ccCCCCCcchHhhc-------ccccEEEEc
Q 008516           88 HANVKDPKFNVEFF-------KQFNVVLNG  110 (563)
Q Consensus        88 ~~~i~~~~~~~~~~-------~~~dvVi~a  110 (563)
                      ..++++...-..++       .+.|++|++
T Consensus        63 ~~Dv~~~~~v~~~~~~~~~~~g~iD~lvnn   92 (280)
T 3tox_A           63 AGDVGDEALHEALVELAVRRFGGLDTAFNN   92 (280)
T ss_dssp             CCCTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             ECCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            66665432222222       367777774

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=92.35  E-value=0.26  Score=48.28  Aligned_cols=81  Identities=21%  Similarity=0.383  Sum_probs=52.3

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      +|.+++++|.| .||||.++++.|+..|. ++.++|.+                   ..+.+.+++.+.+.. ..++..+
T Consensus        17 ~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~-------------------~~~~~~~~~~l~~~~-~~~~~~~   75 (266)
T 4egf_A           17 RLDGKRALITGATKGIGADIARAFAAAGA-RLVLSGRD-------------------VSELDAARRALGEQF-GTDVHTV   75 (266)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHHH-CCCEEEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHHhc-CCcEEEE
Confidence            36678888888 68999999999999997 57787643                   234444555554421 3456667


Q ss_pred             ccCCCCCcchHhhc-------ccccEEEEc
Q 008516           88 HANVKDPKFNVEFF-------KQFNVVLNG  110 (563)
Q Consensus        88 ~~~i~~~~~~~~~~-------~~~dvVi~a  110 (563)
                      ..++++...-..++       .+.|++|++
T Consensus        76 ~~Dv~~~~~v~~~~~~~~~~~g~id~lv~n  105 (266)
T 4egf_A           76 AIDLAEPDAPAELARRAAEAFGGLDVLVNN  105 (266)
T ss_dssp             ECCTTSTTHHHHHHHHHHHHHTSCSEEEEE
T ss_pred             EecCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            77775543222332       366777774

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=92.35  E-value=0.1  Score=52.54  Aligned_cols=34  Identities=26%  Similarity=0.407  Sum_probs=31.7

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEe
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      +.+++++|+|+||.|..++..|...|+++|+|++
T Consensus       120 ~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~n  153 (282)
T 3fbt_A          120 IKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVT  153 (282)
T ss_dssp             CTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEE
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEe
Confidence            4678999999999999999999999999999986

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=92.35  E-value=0.62  Score=46.75  Aligned_cols=108  Identities=11%  Similarity=0.114  Sum_probs=64.3

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCC-CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           13 AKVLMVG-AGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        13 ~~VlvvG-aGgiG~ellknLal~Gv-g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      ++|+|.| .|+||..+++.|+..|- -+++++|...-.. +.  .                  .+..+. .-+++.+..+
T Consensus         5 ~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~-~~--~------------------~~~~~~-~~~~~~~~~D   62 (348)
T 1oc2_A            5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAG-NK--A------------------NLEAIL-GDRVELVVGD   62 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTC-CG--G------------------GTGGGC-SSSEEEEECC
T ss_pred             cEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCC-Ch--h------------------HHhhhc-cCCeEEEECC
Confidence            5899999 59999999999999943 2688877532100 00  0                  011111 1245556666


Q ss_pred             CCCCcchHhhcccccEEEEccCCH-----------------HHHHHHHHHHHhcCCCEEEeccccceee
Q 008516           91 VKDPKFNVEFFKQFNVVLNGLDNL-----------------DARRHVNRLCLAADVPLVESGTTGFLGQ  142 (563)
Q Consensus        91 i~~~~~~~~~~~~~dvVi~alDn~-----------------~ar~~in~~c~~~~~pli~~gt~G~~G~  142 (563)
                      +++...-.+.++++|+||.+....                 ..-..+-+.|...+..+|..++.+.+|.
T Consensus        63 l~d~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~v~~SS~~vyg~  131 (348)
T 1oc2_A           63 IADAELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVSTDEVYGD  131 (348)
T ss_dssp             TTCHHHHHHHHTTCSEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGGCC
T ss_pred             CCCHHHHHHHhhcCCEEEECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCCeEEEecccceeCC
Confidence            654433345677889999864321                 1123344566666777888777665553

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=92.35  E-value=0.12  Score=54.06  Aligned_cols=37  Identities=27%  Similarity=0.457  Sum_probs=35.0

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +|.+.||+|+|+|..|..+++.|..+|+++|+++|..
T Consensus       189 ~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          189 KIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             CTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            5788999999999999999999999999999999976

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=92.32  E-value=0.31  Score=49.41  Aligned_cols=35  Identities=17%  Similarity=0.468  Sum_probs=29.6

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ....+|.|||+|.+|..++++|+..|. +++++|.+
T Consensus        29 ~~~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~   63 (320)
T 4dll_A           29 PYARKITFLGTGSMGLPMARRLCEAGY-ALQVWNRT   63 (320)
T ss_dssp             CCCSEEEEECCTTTHHHHHHHHHHTTC-EEEEECSC
T ss_pred             cCCCEEEEECccHHHHHHHHHHHhCCC-eEEEEcCC
Confidence            345689999999999999999999997 68887643

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=92.32  E-value=0.12  Score=47.87  Aligned_cols=32  Identities=22%  Similarity=0.496  Sum_probs=29.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +..|+|||+|..|..+|..|++.|+ +++|+|.
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G~-~V~v~Ek   33 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAGH-QVHLFDK   33 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTC-CEEEECS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEEC
Confidence            4579999999999999999999999 5899884

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=92.30  E-value=0.16  Score=49.25  Aligned_cols=35  Identities=31%  Similarity=0.490  Sum_probs=29.6

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +++++|+|.| .||||.++++.|+..|. ++.++|.+
T Consensus         5 ~~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~   40 (264)
T 2pd6_A            5 LRSALALVTGAGSGIGRAVSVRLAGEGA-TVAACDLD   40 (264)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5678899998 68999999999999996 68887743

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=92.29  E-value=0.26  Score=46.79  Aligned_cols=35  Identities=20%  Similarity=0.116  Sum_probs=28.0

Q ss_pred             cCCcEEEEC-CcHHHHHHHHHHHHhC-CCeEEEEeCC
Q 008516           11 KGAKVLMVG-AGGIGCELLKTLALSG-FQDIHIIDMD   45 (563)
Q Consensus        11 ~~~~VlvvG-aGgiG~ellknLal~G-vg~I~iiD~D   45 (563)
                      ..++|+|.| .|++|.++++.|+..| -.++++++.+
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~   39 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRS   39 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcC
Confidence            357899998 6999999999999995 2367777654

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=92.29  E-value=0.26  Score=48.08  Aligned_cols=82  Identities=20%  Similarity=0.331  Sum_probs=50.0

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      +.+++++|.| .||||.++++.|+..|. ++.++|.+.                   .+.+.+.+.+.+..+..++..+.
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~~   64 (267)
T 2gdz_A            5 VNGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNL-------------------EAGVQCKAALHEQFEPQKTLFIQ   64 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHTTTSCGGGEEEEE
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEECCH-------------------HHHHHHHHHHHhhcCCCceEEEe
Confidence            4567899998 58999999999999996 677776331                   23333334444333334566666


Q ss_pred             cCCCCCcchHhh-------cccccEEEEcc
Q 008516           89 ANVKDPKFNVEF-------FKQFNVVLNGL  111 (563)
Q Consensus        89 ~~i~~~~~~~~~-------~~~~dvVi~al  111 (563)
                      .++++...-..+       +.+.|+||++.
T Consensus        65 ~D~~~~~~v~~~~~~~~~~~g~id~lv~~A   94 (267)
T 2gdz_A           65 CDVADQQQLRDTFRKVVDHFGRLDILVNNA   94 (267)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             cCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            666543221222       23568888853

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=92.28  E-value=0.23  Score=50.77  Aligned_cols=33  Identities=18%  Similarity=0.287  Sum_probs=27.4

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        13 ~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +||+|.| .|.+|..+++.|...|.-+++.+|.+
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~   34 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQ   34 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCC
Confidence            4799999 69999999999999997566666643

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=92.28  E-value=0.35  Score=49.06  Aligned_cols=72  Identities=22%  Similarity=0.316  Sum_probs=50.3

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCC-CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC---CCceEEEec
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR---PQMSITAHH   88 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gv-g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~n---p~v~I~~~~   88 (563)
                      .||.|+|+|.+|..++-.|+..|. ++|.++|-+                   ..|++..+..+.+..   ..+++++  
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~-------------------~~k~~g~a~dl~~~~~~~~~~~v~~--   59 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLD-------------------RKLAQAHAEDILHATPFAHPVWVWA--   59 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS-------------------HHHHHHHHHHHHTTGGGSCCCEEEE--
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC-------------------hhHHHHHHHHHHHhHhhcCCeEEEE--
Confidence            489999999999999999998875 579998843                   245554444444432   3556654  


Q ss_pred             cCCCCCcchHhhcccccEEEEccC
Q 008516           89 ANVKDPKFNVEFFKQFNVVLNGLD  112 (563)
Q Consensus        89 ~~i~~~~~~~~~~~~~dvVi~alD  112 (563)
                      +.       .+-++++|+||.+..
T Consensus        60 ~~-------~~a~~~aD~Vii~ag   76 (310)
T 2xxj_A           60 GS-------YGDLEGARAVVLAAG   76 (310)
T ss_dssp             CC-------GGGGTTEEEEEECCC
T ss_pred             CC-------HHHhCCCCEEEECCC
Confidence            11       234889999999764

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=92.28  E-value=0.46  Score=48.76  Aligned_cols=74  Identities=12%  Similarity=0.151  Sum_probs=49.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCC-CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhh---CCCceEEEe
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKF---RPQMSITAH   87 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gv-g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~---np~v~I~~~   87 (563)
                      ..||.|+|+|.+|..++..|+..|+ ++++++|-+                   ..|++..+.-+.+.   .+..++...
T Consensus        21 ~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~-------------------~~~~~g~a~DL~~~~~~~~~~~i~~t   81 (330)
T 3ldh_A           21 YNKITVVGCDAVGMADAISVLMKDLADEVALVDVM-------------------EDKLKGEMMDLEHGSLFLHTAKIVSG   81 (330)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSC-------------------HHHHHHHHHHHHHHGGGSCCSEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECC-------------------HHHHHHHHHHhhhhhhcccCCeEEEc
Confidence            4789999999999999999999997 689998832                   23444433333332   233445432


Q ss_pred             ccCCCCCcchHhhcccccEEEEccC
Q 008516           88 HANVKDPKFNVEFFKQFNVVLNGLD  112 (563)
Q Consensus        88 ~~~i~~~~~~~~~~~~~dvVi~alD  112 (563)
                      . +     +. + ++++|+||.+..
T Consensus        82 ~-d-----~~-~-~~daDiVIitaG   98 (330)
T 3ldh_A           82 K-D-----YS-V-SAGSKLVVITAG   98 (330)
T ss_dssp             S-S-----SC-S-CSSCSEEEECCS
T ss_pred             C-C-----HH-H-hCCCCEEEEeCC
Confidence            1 1     21 2 789999998743

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=92.27  E-value=0.4  Score=46.66  Aligned_cols=35  Identities=29%  Similarity=0.482  Sum_probs=29.7

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .+++++|+|.| .||||.++++.|+..|. ++.++|.
T Consensus        13 ~l~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r   48 (278)
T 2bgk_A           13 RLQDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADI   48 (278)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             cccCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcC
Confidence            46778899998 68999999999999996 6777764

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=92.27  E-value=0.21  Score=48.99  Aligned_cols=36  Identities=25%  Similarity=0.398  Sum_probs=28.0

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +=..++|+|.| .|.||..+++.|...|. +++++|.+
T Consensus         9 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   45 (292)
T 1vl0_A            9 HHHHMKILITGANGQLGREIQKQLKGKNV-EVIPTDVQ   45 (292)
T ss_dssp             ---CEEEEEESTTSHHHHHHHHHHTTSSE-EEEEECTT
T ss_pred             ccccceEEEECCCChHHHHHHHHHHhCCC-eEEeccCc
Confidence            34567899998 59999999999999984 67777754

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=92.24  E-value=0.28  Score=47.11  Aligned_cols=62  Identities=21%  Similarity=0.245  Sum_probs=42.2

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      +++++++|.| .||||.++++.|+..|. ++.++|.+                   ..+.+.+.+.+++..+  ++..+.
T Consensus         3 l~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~r~-------------------~~~~~~~~~~~~~~~~--~~~~~~   60 (247)
T 3lyl_A            3 LNEKVALVTGASRGIGFEVAHALASKGA-TVVGTATS-------------------QASAEKFENSMKEKGF--KARGLV   60 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESS-------------------HHHHHHHHHHHHHTTC--CEEEEE
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHhcCC--ceEEEE
Confidence            5677888988 58999999999999997 57777643                   2344555555555443  455555


Q ss_pred             cCCCC
Q 008516           89 ANVKD   93 (563)
Q Consensus        89 ~~i~~   93 (563)
                      .++++
T Consensus        61 ~D~~~   65 (247)
T 3lyl_A           61 LNISD   65 (247)
T ss_dssp             CCTTC
T ss_pred             ecCCC
Confidence            55543

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=92.21  E-value=0.68  Score=45.33  Aligned_cols=93  Identities=19%  Similarity=0.250  Sum_probs=57.2

Q ss_pred             HHHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEE
Q 008516            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITA   86 (563)
Q Consensus         8 ~kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~   86 (563)
                      ..|.+++++|.| .||||.++++.|+..|. ++.++|.+.-. .++..      ..-...+.+.+.+.+....+  ++..
T Consensus         9 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~--~~~~   78 (278)
T 3sx2_A            9 GPLTGKVAFITGAARGQGRAHAVRLAADGA-DIIAVDLCDQI-ASVPY------PLATPEELAATVKLVEDIGS--RIVA   78 (278)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCC-TTCSS------CCCCHHHHHHHHHHHHHHTC--CEEE
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeccccc-ccccc------cccchHHHHHHHHHHHhcCC--eEEE
Confidence            457888999998 58999999999999997 57888754210 00000      00112344455555555543  5666


Q ss_pred             eccCCCCCcchHhhc-------ccccEEEEc
Q 008516           87 HHANVKDPKFNVEFF-------KQFNVVLNG  110 (563)
Q Consensus        87 ~~~~i~~~~~~~~~~-------~~~dvVi~a  110 (563)
                      +..++++...-..++       .+.|++|++
T Consensus        79 ~~~D~~~~~~v~~~~~~~~~~~g~id~lv~n  109 (278)
T 3sx2_A           79 RQADVRDRESLSAALQAGLDELGRLDIVVAN  109 (278)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHCCCCEEEEC
T ss_pred             EeCCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            777776543223333       367888885

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=92.21  E-value=0.41  Score=46.88  Aligned_cols=34  Identities=26%  Similarity=0.360  Sum_probs=29.1

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +.+++|+|.| .||||.++++.|+..|. ++.++|.
T Consensus        29 l~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r   63 (272)
T 1yb1_A           29 VTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDI   63 (272)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEEc
Confidence            5678899998 68999999999999996 5777774

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=92.19  E-value=0.75  Score=46.61  Aligned_cols=92  Identities=21%  Similarity=0.246  Sum_probs=57.9

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCC-eEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQ-DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg-~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i   91 (563)
                      .+|.|||+|.+|..+++.|...|.. +++++|.+.                   .+.+.+.    +..  +. .....+ 
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~-------------------~~~~~a~----~~G--~~-~~~~~~-   86 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP-------------------ESISKAV----DLG--II-DEGTTS-   86 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH-------------------HHHHHHH----HTT--SC-SEEESC-
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH-------------------HHHHHHH----HCC--Cc-chhcCC-
Confidence            7899999999999999999999974 788877432                   1222221    211  10 000111 


Q ss_pred             CCCcchHh-hcccccEEEEccCCHHHHHHHHHHHHh--cCCCEEEecc
Q 008516           92 KDPKFNVE-FFKQFNVVLNGLDNLDARRHVNRLCLA--ADVPLVESGT  136 (563)
Q Consensus        92 ~~~~~~~~-~~~~~dvVi~alDn~~ar~~in~~c~~--~~~pli~~gt  136 (563)
                           ..+ .++++|+||.|+-.......+.++...  .+..+++.++
T Consensus        87 -----~~~~~~~~aDvVilavp~~~~~~vl~~l~~~l~~~~iv~d~~S  129 (314)
T 3ggo_A           87 -----IAKVEDFSPDFVMLSSPVRTFREIAKKLSYILSEDATVTDQGS  129 (314)
T ss_dssp             -----TTGGGGGCCSEEEECSCGGGHHHHHHHHHHHSCTTCEEEECCS
T ss_pred             -----HHHHhhccCCEEEEeCCHHHHHHHHHHHhhccCCCcEEEECCC
Confidence                 134 578999999998765566666555432  3555666554

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=92.19  E-value=0.24  Score=48.29  Aligned_cols=35  Identities=26%  Similarity=0.430  Sum_probs=29.5

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .|++++++|.| .||||.++++.|+..|. ++.++|.
T Consensus         3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r   38 (257)
T 3imf_A            3 AMKEKVVIITGGSSGMGKGMATRFAKEGA-RVVITGR   38 (257)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            46778889988 58999999999999997 5777764

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=92.18  E-value=0.4  Score=48.35  Aligned_cols=73  Identities=26%  Similarity=0.351  Sum_probs=47.8

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      .+.+++++|.| .||||.++++.|+..|. ++.++|.+.-    +.|     ...-...+.+.+++.+....  .++..+
T Consensus        24 ~l~gk~vlVTGas~GIG~aia~~la~~G~-~Vv~~~r~~~----~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~~~   91 (322)
T 3qlj_A           24 VVDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVG----LDG-----SPASGGSAAQSVVDEITAAG--GEAVAD   91 (322)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBC----TTS-----SBTCTTSHHHHHHHHHHHTT--CEEEEE
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCccc----ccc-----cccccHHHHHHHHHHHHhcC--CcEEEE
Confidence            35677888887 68999999999999997 7888876531    111     11223445666666666554  356666


Q ss_pred             ccCCCC
Q 008516           88 HANVKD   93 (563)
Q Consensus        88 ~~~i~~   93 (563)
                      ..++++
T Consensus        92 ~~Dv~d   97 (322)
T 3qlj_A           92 GSNVAD   97 (322)
T ss_dssp             CCCTTS
T ss_pred             ECCCCC
Confidence            666543

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=92.17  E-value=0.27  Score=48.47  Aligned_cols=35  Identities=20%  Similarity=0.256  Sum_probs=28.8

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .+++++++|.| .||||.++++.|+..|. ++.++|.
T Consensus        25 ~l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r   60 (270)
T 3ftp_A           25 TLDKQVAIVTGASRGIGRAIALELARRGA-MVIGTAT   60 (270)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            36677788887 68999999999999998 6777764

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=92.16  E-value=0.25  Score=49.00  Aligned_cols=32  Identities=22%  Similarity=0.444  Sum_probs=28.1

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ++|.|||+|.+|..++++|+..|. +++++|.+
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~-~V~~~dr~   33 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGF-DVTVWNRN   33 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTC-CEEEECSS
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence            479999999999999999999996 58887744

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=92.16  E-value=0.28  Score=47.59  Aligned_cols=40  Identities=20%  Similarity=0.217  Sum_probs=29.8

Q ss_pred             HHHHHcCCcEEEEC-CcHHHHHHHHHHHHhCC--CeEEEEeCC
Q 008516            6 QLEAIKGAKVLMVG-AGGIGCELLKTLALSGF--QDIHIIDMD   45 (563)
Q Consensus         6 ~q~kL~~~~VlvvG-aGgiG~ellknLal~Gv--g~I~iiD~D   45 (563)
                      ....++.++|+|.| .||||.++++.|+..|.  .++.++|.+
T Consensus        15 ~~~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~   57 (267)
T 1sny_A           15 VPRGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRN   57 (267)
T ss_dssp             -----CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESC
T ss_pred             cccCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecC
Confidence            34457788899997 68999999999999994  578888754

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=92.14  E-value=0.64  Score=45.79  Aligned_cols=96  Identities=17%  Similarity=0.195  Sum_probs=55.3

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      +|.+++++|.| .||||.++++.|+..|. ++.++|.+.-....+...-+ .  .-...+.+.+++.+....  .++..+
T Consensus         8 ~l~~k~~lVTGas~gIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~--~~~~~~   81 (286)
T 3uve_A            8 RVEGKVAFVTGAARGQGRSHAVRLAQEGA-DIIAVDICKPIRAGVVDTAI-P--ASTPEDLAETADLVKGHN--RRIVTA   81 (286)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCSBTTBCCCSS-C--CCCHHHHHHHHHHHHTTT--CCEEEE
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEecccccccccccccc-c--cCCHHHHHHHHHHHhhcC--CceEEE
Confidence            46788899998 57999999999999997 58888865311111110000 0  011234444555555443  356666


Q ss_pred             ccCCCCCcchHhh-------cccccEEEEc
Q 008516           88 HANVKDPKFNVEF-------FKQFNVVLNG  110 (563)
Q Consensus        88 ~~~i~~~~~~~~~-------~~~~dvVi~a  110 (563)
                      ..++++...-..+       +.+.|++|++
T Consensus        82 ~~Dv~~~~~v~~~~~~~~~~~g~id~lv~n  111 (286)
T 3uve_A           82 EVDVRDYDALKAAVDSGVEQLGRLDIIVAN  111 (286)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             EcCCCCHHHHHHHHHHHHHHhCCCCEEEEC
Confidence            6677543222222       2366777774

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=92.11  E-value=0.19  Score=50.26  Aligned_cols=35  Identities=23%  Similarity=0.447  Sum_probs=29.4

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      |++++++|.| .||||.++++.|+..|. ++.++|.+
T Consensus        39 l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~   74 (293)
T 3rih_A           39 LSARSVLVTGGTKGIGRGIATVFARAGA-NVAVAARS   74 (293)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            5667788887 58999999999999998 78888754

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=92.10  E-value=0.44  Score=46.94  Aligned_cols=80  Identities=19%  Similarity=0.334  Sum_probs=49.3

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      +++++++|.| .||||.++++.|+..|. ++.++|...                  ..+.+.+++.+++..  .++..+.
T Consensus        29 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~------------------~~~~~~~~~~l~~~~--~~~~~~~   87 (271)
T 3v2g_A           29 LAGKTAFVTGGSRGIGAAIAKRLALEGA-AVALTYVNA------------------AERAQAVVSEIEQAG--GRAVAIR   87 (271)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSC------------------HHHHHHHHHHHHHTT--CCEEEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCC------------------HHHHHHHHHHHHhcC--CcEEEEE
Confidence            4567899998 58999999999999997 466665321                  234455555565543  3455566


Q ss_pred             cCCCCCcchHhhc-------ccccEEEEc
Q 008516           89 ANVKDPKFNVEFF-------KQFNVVLNG  110 (563)
Q Consensus        89 ~~i~~~~~~~~~~-------~~~dvVi~a  110 (563)
                      .++++...-.+++       .+.|++|++
T Consensus        88 ~Dv~d~~~v~~~~~~~~~~~g~iD~lvnn  116 (271)
T 3v2g_A           88 ADNRDAEAIEQAIRETVEALGGLDILVNS  116 (271)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCcEEEEC
Confidence            6664432212222       256766664

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=92.10  E-value=0.38  Score=50.29  Aligned_cols=110  Identities=15%  Similarity=0.143  Sum_probs=64.7

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC-------CceE
Q 008516           13 AKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP-------QMSI   84 (563)
Q Consensus        13 ~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np-------~v~I   84 (563)
                      ++|+|.|+ |+||.++++.|...|. ++++++...               + .....+.+.+.+....+       ..++
T Consensus        70 ~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~R~~---------------~-~~~~~~~l~~~l~~~~~~~~~~~~~~~v  132 (427)
T 4f6c_A           70 GNTLLTGATGFLGAYLIEALQGYSH-RIYCFIRAD---------------N-EEIAWYKLMTNLNDYFSEETVEMMLSNI  132 (427)
T ss_dssp             EEEEEECTTSHHHHHHHHHHTTTEE-EEEEEEECS---------------S-HHHHHHHHHHHHHHHSCHHHHHHHHTTE
T ss_pred             CEEEEecCCcHHHHHHHHHHHcCCC-EEEEEECCC---------------C-hHHHHHHHHHHHHHhccccccccccCce
Confidence            48999995 9999999999977775 566654211               0 00112223333333221       1356


Q ss_pred             EEeccCCCC-CcchHhhcccccEEEEccC--------------CHHHHHHHHHHHHhcCCCEEEeccccceee
Q 008516           85 TAHHANVKD-PKFNVEFFKQFNVVLNGLD--------------NLDARRHVNRLCLAADVPLVESGTTGFLGQ  142 (563)
Q Consensus        85 ~~~~~~i~~-~~~~~~~~~~~dvVi~alD--------------n~~ar~~in~~c~~~~~pli~~gt~G~~G~  142 (563)
                      ..+..++++ ....  .+.+.|+||++..              |...-..+-+.|......+|..++.+. |.
T Consensus       133 ~~v~~Dl~d~~~l~--~~~~~d~Vih~A~~~~~~~~~~~~~~~Nv~g~~~l~~aa~~~~~~~v~~SS~~~-G~  202 (427)
T 4f6c_A          133 EVIVGDFECMDDVV--LPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQHHARLIYVSTISV-GT  202 (427)
T ss_dssp             EEEEECC---CCCC--CSSCCSEEEECCCCC-------CHHHHHHHHHHHHHHHHHHTTCEEEEEEEGGG-GS
T ss_pred             EEEeCCCCCcccCC--CcCCCCEEEECCcccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEECchHh-CC
Confidence            666777754 2232  5678999999642              222334555666666678888777766 54

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=92.10  E-value=0.38  Score=48.21  Aligned_cols=34  Identities=21%  Similarity=0.328  Sum_probs=28.8

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +..+|.|||+|.+|+.++++|+..|. +++++|.+
T Consensus         6 ~~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~   39 (303)
T 3g0o_A            6 TDFHVGIVGLGSMGMGAARSCLRAGL-STWGADLN   39 (303)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence            34689999999999999999999997 68887643

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=92.09  E-value=0.5  Score=47.04  Aligned_cols=95  Identities=18%  Similarity=0.202  Sum_probs=57.0

Q ss_pred             CCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           12 GAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        12 ~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      .++|+|.|+ |.+|..+++.|...|. ++++++.+.               .   .++..+. .+..  +++  +.+..+
T Consensus        11 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~l~R~~---------------~---~~~~~~~-~l~~--~~v--~~v~~D   66 (318)
T 2r6j_A           11 KSKILIFGGTGYIGNHMVKGSLKLGH-PTYVFTRPN---------------S---SKTTLLD-EFQS--LGA--IIVKGE   66 (318)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTC-CEEEEECTT---------------C---SCHHHHH-HHHH--TTC--EEEECC
T ss_pred             CCeEEEECCCchHHHHHHHHHHHCCC-cEEEEECCC---------------C---chhhHHH-Hhhc--CCC--EEEEec
Confidence            358999996 9999999999999995 577665321               1   1222211 1211  233  445566


Q ss_pred             CCCCcchHhhcccccEEEEccCCH--HHHHHHHHHHHhcC-CC
Q 008516           91 VKDPKFNVEFFKQFNVVLNGLDNL--DARRHVNRLCLAAD-VP  130 (563)
Q Consensus        91 i~~~~~~~~~~~~~dvVi~alDn~--~ar~~in~~c~~~~-~p  130 (563)
                      +.+...-...+++.|+||++....  ..-..+-+.|.+.+ ++
T Consensus        67 l~d~~~l~~a~~~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~  109 (318)
T 2r6j_A           67 LDEHEKLVELMKKVDVVISALAFPQILDQFKILEAIKVAGNIK  109 (318)
T ss_dssp             TTCHHHHHHHHTTCSEEEECCCGGGSTTHHHHHHHHHHHCCCC
T ss_pred             CCCHHHHHHHHcCCCEEEECCchhhhHHHHHHHHHHHhcCCCC
Confidence            654333346678999999976532  22334445666665 44

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=92.08  E-value=0.47  Score=46.20  Aligned_cols=35  Identities=34%  Similarity=0.530  Sum_probs=29.3

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .+.+++++|.| .||||.++++.|+..|. ++.++|.
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r   39 (262)
T 1zem_A            4 KFNGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDM   39 (262)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            36678899998 68999999999999996 5777763

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=92.06  E-value=0.49  Score=48.91  Aligned_cols=76  Identities=12%  Similarity=0.142  Sum_probs=53.7

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHH-hCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           11 KGAKVLMVGAGGIGCELLKTLAL-SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal-~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      ...++.|||+|+.|..+++.|.. .++.++++.|.                   ...|++.+++.+... +++.+.... 
T Consensus       128 ~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r-------------------~~~~a~~la~~~~~~-~g~~~~~~~-  186 (350)
T 1x7d_A          128 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDT-------------------DPLATAKLIANLKEY-SGLTIRRAS-  186 (350)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECS-------------------SHHHHHHHHHHHTTC-TTCEEEECS-
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcC-------------------CHHHHHHHHHHHHhc-cCceEEEeC-
Confidence            46789999999999999999864 47888988762                   234677666666442 344444321 


Q ss_pred             CCCCCcchHhhcccccEEEEccCC
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGLDN  113 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~alDn  113 (563)
                            ...+.++++|+|++|+-+
T Consensus       187 ------~~~eav~~aDiVi~aTps  204 (350)
T 1x7d_A          187 ------SVAEAVKGVDIITTVTAD  204 (350)
T ss_dssp             ------SHHHHHTTCSEEEECCCC
T ss_pred             ------CHHHHHhcCCEEEEeccC
Confidence                  124567889999999875

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=92.03  E-value=0.29  Score=47.86  Aligned_cols=83  Identities=13%  Similarity=0.260  Sum_probs=53.7

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      .+++++++|.| .||||.++++.|+..|. ++.++|...                -...+.+.+++.++..  +.++..+
T Consensus         8 ~l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~----------------~~~~~~~~~~~~~~~~--~~~~~~~   68 (262)
T 3ksu_A            8 DLKNKVIVIAGGIKNLGALTAKTFALESV-NLVLHYHQA----------------KDSDTANKLKDELEDQ--GAKVALY   68 (262)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHTTSSC-EEEEEESCG----------------GGHHHHHHHHHHHHTT--TCEEEEE
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecCc----------------cCHHHHHHHHHHHHhc--CCcEEEE
Confidence            35678899998 68999999999999997 566665321                1223455555566554  3467777


Q ss_pred             ccCCCCCcchHhhc-------ccccEEEEc
Q 008516           88 HANVKDPKFNVEFF-------KQFNVVLNG  110 (563)
Q Consensus        88 ~~~i~~~~~~~~~~-------~~~dvVi~a  110 (563)
                      ..++++...-..++       .+.|++|++
T Consensus        69 ~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnn   98 (262)
T 3ksu_A           69 QSDLSNEEEVAKLFDFAEKEFGKVDIAINT   98 (262)
T ss_dssp             ECCCCSHHHHHHHHHHHHHHHCSEEEEEEC
T ss_pred             ECCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            77775432222232       367888874

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=91.97  E-value=0.28  Score=52.47  Aligned_cols=34  Identities=26%  Similarity=0.350  Sum_probs=30.5

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTI   47 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~V   47 (563)
                      +||.|||+|.+|..++..|+..|. +++++|.|.-
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~-~V~~~D~~~~   36 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGA-NVRCIDTDRN   36 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCC-EEEEEECCHH
Confidence            689999999999999999999997 7889987653

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=91.92  E-value=0.31  Score=47.78  Aligned_cols=34  Identities=21%  Similarity=0.320  Sum_probs=28.5

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +.+++++|.| .||||.++++.|+..|. ++.++|.
T Consensus         4 ~~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r   38 (278)
T 1spx_A            4 FAEKVAIITGSSNGIGRATAVLFAREGA-KVTITGR   38 (278)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            5677888888 58999999999999996 6777764

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=91.91  E-value=0.37  Score=46.73  Aligned_cols=34  Identities=32%  Similarity=0.470  Sum_probs=28.4

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +.+++|+|.| .||||.++++.|+..|. ++.++|.
T Consensus        12 l~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r   46 (266)
T 1xq1_A           12 LKAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCAR   46 (266)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            4667888887 68999999999999996 6777764

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=91.90  E-value=0.51  Score=46.48  Aligned_cols=34  Identities=24%  Similarity=0.471  Sum_probs=28.9

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +.+++++|.| .||||.++++.|+..|. ++.++|.
T Consensus        20 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r   54 (277)
T 2rhc_B           20 QDSEVALVTGATSGIGLEIARRLGKEGL-RVFVCAR   54 (277)
T ss_dssp             TTSCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            5677899997 68999999999999996 6777764

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=91.86  E-value=0.32  Score=52.26  Aligned_cols=94  Identities=15%  Similarity=0.162  Sum_probs=56.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i   91 (563)
                      ..+|.|||+|.+|..++++|+..|. +++++|.+                   ..|++.+.+..    +.-.+....   
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G~-~V~v~dr~-------------------~~~~~~l~~~~----~~~gi~~~~---   57 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRGY-TVAIYNRT-------------------TSKTEEVFKEH----QDKNLVFTK---   57 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTTC-CEEEECSS-------------------HHHHHHHHHHT----TTSCEEECS---
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCCC-EEEEEcCC-------------------HHHHHHHHHhC----cCCCeEEeC---
Confidence            4689999999999999999999997 57776532                   12333333221    111122111   


Q ss_pred             CCCcchHhhccc---ccEEEEccCC-HHHHHHHHHHHH--hcCCCEEEecc
Q 008516           92 KDPKFNVEFFKQ---FNVVLNGLDN-LDARRHVNRLCL--AADVPLVESGT  136 (563)
Q Consensus        92 ~~~~~~~~~~~~---~dvVi~alDn-~~ar~~in~~c~--~~~~pli~~gt  136 (563)
                          ...++.++   .|+|+.++-. ...+..+.++..  ..+..+|+.++
T Consensus        58 ----s~~e~v~~l~~aDvVilavp~~~~v~~vl~~l~~~l~~g~iiId~s~  104 (474)
T 2iz1_A           58 ----TLEEFVGSLEKPRRIMLMVQAGAATDATIKSLLPLLDIGDILIDGGN  104 (474)
T ss_dssp             ----SHHHHHHTBCSSCEEEECCCTTHHHHHHHHHHGGGCCTTCEEEECSC
T ss_pred             ----CHHHHHhhccCCCEEEEEccCchHHHHHHHHHHhhCCCCCEEEECCC
Confidence                12345554   8999998876 345555554432  23455676553

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=91.83  E-value=0.28  Score=49.93  Aligned_cols=34  Identities=32%  Similarity=0.465  Sum_probs=30.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCC-CeEEEEeCC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMD   45 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gv-g~I~iiD~D   45 (563)
                      ..||.|+|+|.+|..++-.|+..|. ++|.++|-|
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~   41 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVF   41 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            4689999999999999999999886 679999854

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=91.83  E-value=0.24  Score=48.14  Aligned_cols=97  Identities=12%  Similarity=0.209  Sum_probs=57.2

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516           13 AKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (563)
Q Consensus        13 ~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i   91 (563)
                      ++|+|.|+ |+||..+++.|+..|. +++++|.+.-.  .+.                          +  .++.+..++
T Consensus         3 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~--~~~--------------------------~--~~~~~~~Dl   51 (267)
T 3ay3_A            3 NRLLVTGAAGGVGSAIRPHLGTLAH-EVRLSDIVDLG--AAE--------------------------A--HEEIVACDL   51 (267)
T ss_dssp             EEEEEESTTSHHHHHHGGGGGGTEE-EEEECCSSCCC--CCC--------------------------T--TEEECCCCT
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCC-EEEEEeCCCcc--ccC--------------------------C--CccEEEccC
Confidence            47999996 9999999999999884 67776543210  000                          1  234455555


Q ss_pred             CCCcchHhhcccccEEEEccC-------------CHHHHHHHHHHHHhcCC-CEEEeccccce
Q 008516           92 KDPKFNVEFFKQFNVVLNGLD-------------NLDARRHVNRLCLAADV-PLVESGTTGFL  140 (563)
Q Consensus        92 ~~~~~~~~~~~~~dvVi~alD-------------n~~ar~~in~~c~~~~~-pli~~gt~G~~  140 (563)
                      ++...-.+.+++.|+||++..             |...-..+-+.|...++ .+|..++.+.+
T Consensus        52 ~d~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~  114 (267)
T 3ay3_A           52 ADAQAVHDLVKDCDGIIHLGGVSVERPWNDILQANIIGAYNLYEAARNLGKPRIVFASSNHTI  114 (267)
T ss_dssp             TCHHHHHHHHTTCSEEEECCSCCSCCCHHHHHHHTHHHHHHHHHHHHHTTCCEEEEEEEGGGS
T ss_pred             CCHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCHHHh
Confidence            443223455677888887531             22223445556666664 46666555433

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=91.80  E-value=0.22  Score=48.59  Aligned_cols=97  Identities=20%  Similarity=0.177  Sum_probs=57.8

Q ss_pred             cEEEECC-cHHHHHHHHHHHHh--CCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           14 KVLMVGA-GGIGCELLKTLALS--GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        14 ~VlvvGa-GgiG~ellknLal~--Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      +|+|.|+ |.+|..+++.|...  |. ++++++.+.-                   +...    +..  +.  ++.+..+
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r~~~-------------------~~~~----~~~--~~--~~~~~~D   52 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPAS-QIVAIVRNPA-------------------KAQA----LAA--QG--ITVRQAD   52 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGG-GEEEEESCTT-------------------TCHH----HHH--TT--CEEEECC
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCc-eEEEEEcChH-------------------hhhh----hhc--CC--CeEEEcC
Confidence            5899996 99999999999987  75 6777764311                   0000    111  22  3445556


Q ss_pred             CCCCcchHhhcccccEEEEccC-----CHHHHHHHHHHHHhcCC-CEEEecccc
Q 008516           91 VKDPKFNVEFFKQFNVVLNGLD-----NLDARRHVNRLCLAADV-PLVESGTTG  138 (563)
Q Consensus        91 i~~~~~~~~~~~~~dvVi~alD-----n~~ar~~in~~c~~~~~-pli~~gt~G  138 (563)
                      +++...-.+.++++|+||.+..     |...-..+-+.|.+.++ .+|..++.+
T Consensus        53 ~~d~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~l~~a~~~~~~~~~v~~Ss~~  106 (286)
T 2zcu_A           53 YGDEAALTSALQGVEKLLLISSSEVGQRAPQHRNVINAAKAAGVKFIAYTSLLH  106 (286)
T ss_dssp             TTCHHHHHHHTTTCSEEEECC--------CHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred             CCCHHHHHHHHhCCCEEEEeCCCCchHHHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence            6543333456788999998643     23334455566666665 466665544

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=91.77  E-value=0.34  Score=47.51  Aligned_cols=37  Identities=22%  Similarity=0.446  Sum_probs=30.3

Q ss_pred             HHHHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            7 LEAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         7 q~kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ...+.+++++|.| .||||.++++.|+..|. ++.++|.
T Consensus        16 ~~~l~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r   53 (267)
T 1vl8_A           16 VFDLRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASR   53 (267)
T ss_dssp             -CCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CcCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            3457788899998 68999999999999996 5777764

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=91.75  E-value=0.56  Score=45.40  Aligned_cols=32  Identities=31%  Similarity=0.502  Sum_probs=26.8

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        12 ~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +++++|.| .||||.++++.|+..|. ++.++|.
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r   34 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGF-AVAIADY   34 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence            46788888 68999999999999996 6777763

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=91.72  E-value=0.14  Score=53.88  Aligned_cols=38  Identities=16%  Similarity=0.398  Sum_probs=35.8

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~   46 (563)
                      ++...||+|+|+|+.|..+++.|..+|+++|+++|.+-
T Consensus       185 ~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          185 SLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             CTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             CCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            57889999999999999999999999999999999875

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=91.72  E-value=0.47  Score=47.20  Aligned_cols=36  Identities=36%  Similarity=0.579  Sum_probs=30.3

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .|++++++|.| .||||.++++.|+..|. ++.++|.+
T Consensus        44 ~l~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~   80 (291)
T 3ijr_A           44 KLKGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLD   80 (291)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            46788999998 58999999999999997 57777643

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=91.71  E-value=0.36  Score=47.14  Aligned_cols=35  Identities=31%  Similarity=0.519  Sum_probs=26.1

Q ss_pred             HHHHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEE
Q 008516            7 LEAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHII   42 (563)
Q Consensus         7 q~kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~ii   42 (563)
                      +..+++++|+|.| .||||.++++.|+..|.. +.++
T Consensus        21 ~~~l~~k~vlVTGas~gIG~~la~~l~~~G~~-v~i~   56 (267)
T 4iiu_A           21 QSNAMSRSVLVTGASKGIGRAIARQLAADGFN-IGVH   56 (267)
T ss_dssp             ----CCCEEEETTTTSHHHHHHHHHHHHTTCE-EEEE
T ss_pred             ccccCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEE
Confidence            4567788899998 589999999999999985 4443

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=91.69  E-value=0.33  Score=47.66  Aligned_cols=36  Identities=28%  Similarity=0.549  Sum_probs=30.8

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .+++++++|.| .||||.++++.|+..|. ++.++|.+
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~   44 (271)
T 3tzq_B            8 ELENKVAIITGACGGIGLETSRVLARAGA-RVVLADLP   44 (271)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECT
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            46788899998 58999999999999997 68888754

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=91.63  E-value=0.32  Score=47.25  Aligned_cols=35  Identities=23%  Similarity=0.310  Sum_probs=29.0

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .+++++|+|.| .||||.++++.|+..|. ++.++|.
T Consensus        18 ~~~~k~vlItGasggiG~~la~~l~~~G~-~v~~~~r   53 (274)
T 1ja9_A           18 PLAGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYG   53 (274)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcC
Confidence            36678899998 68999999999999996 5777664

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=91.62  E-value=0.53  Score=44.94  Aligned_cols=33  Identities=24%  Similarity=0.442  Sum_probs=27.8

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEe
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      +++++|+|.| .||||.++++.|+..|. ++.++|
T Consensus         3 l~~~~vlItGasggiG~~~a~~l~~~G~-~V~~~~   36 (247)
T 2hq1_A            3 LKGKTAIVTGSSRGLGKAIAWKLGNMGA-NIVLNG   36 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEc
Confidence            5677899998 68999999999999996 677764

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=91.62  E-value=0.29  Score=49.58  Aligned_cols=34  Identities=15%  Similarity=0.294  Sum_probs=30.1

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHh-CCCeEEEEe
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALS-GFQDIHIID   43 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~-Gvg~I~iiD   43 (563)
                      ....+|.|||+|.+|..++++|... |+.++++.|
T Consensus       133 ~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~d  167 (312)
T 2i99_A          133 PSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWN  167 (312)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEEC
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEc
Confidence            3467899999999999999999987 888898876

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=91.59  E-value=0.39  Score=46.67  Aligned_cols=30  Identities=20%  Similarity=0.414  Sum_probs=26.4

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEe
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      .+|.|||+|.+|..+++.|...|. .+.++|
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~-~v~~~~   33 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPH-ELIISG   33 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSC-EEEEEC
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCC-eEEEEC
Confidence            589999999999999999999883 677766

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=91.54  E-value=0.41  Score=46.12  Aligned_cols=62  Identities=24%  Similarity=0.334  Sum_probs=40.4

Q ss_pred             cCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        11 ~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      ++++++|.| .||||.++++.|+..|. ++.++|...                  ..+.+.+++.++...  .++..+..
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~------------------~~~~~~~~~~~~~~~--~~~~~~~~   61 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGY-NVAVNYAGS------------------KEKAEAVVEEIKAKG--VDSFAIQA   61 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSC------------------HHHHHHHHHHHHHTT--SCEEEEEC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCC------------------HHHHHHHHHHHHhcC--CcEEEEEc
Confidence            456788887 68999999999999997 466655321                  134555555555543  34555555


Q ss_pred             CCCC
Q 008516           90 NVKD   93 (563)
Q Consensus        90 ~i~~   93 (563)
                      ++++
T Consensus        62 Dv~d   65 (246)
T 3osu_A           62 NVAD   65 (246)
T ss_dssp             CTTC
T ss_pred             cCCC
Confidence            5543

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=91.53  E-value=0.84  Score=46.10  Aligned_cols=33  Identities=24%  Similarity=0.484  Sum_probs=28.4

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCC-CeEEEEeCC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMD   45 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gv-g~I~iiD~D   45 (563)
                      .||.|+|+|.+|+.++..|+..|. .+++++|.+
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~   34 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVV   34 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            379999999999999999998764 469999854

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=91.52  E-value=0.38  Score=47.63  Aligned_cols=35  Identities=20%  Similarity=0.348  Sum_probs=29.5

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .+.+++++|.| .||||.++++.|+..|. ++.++|.
T Consensus        23 ~l~~k~vlITGasggiG~~la~~L~~~G~-~V~~~~r   58 (302)
T 1w6u_A           23 SFQGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASR   58 (302)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            36678899998 58999999999999997 5777764

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=91.52  E-value=0.49  Score=46.41  Aligned_cols=82  Identities=17%  Similarity=0.214  Sum_probs=52.7

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEE-EEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIH-IIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~-iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i   91 (563)
                      .||.|+|+|.+|..+++.+...+- .+. ++|.+.-.                              ..++.+   ..++
T Consensus         4 mkI~ViGaGrMG~~i~~~l~~~~~-eLva~~d~~~~~------------------------------~~gv~v---~~dl   49 (243)
T 3qy9_A            4 MKILLIGYGAMNQRVARLAEEKGH-EIVGVIENTPKA------------------------------TTPYQQ---YQHI   49 (243)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEEECSSCC--------------------------------CCSCB---CSCT
T ss_pred             eEEEEECcCHHHHHHHHHHHhCCC-EEEEEEecCccc------------------------------cCCCce---eCCH
Confidence            689999999999999999998875 554 34533210                              011111   1111


Q ss_pred             CCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccc
Q 008516           92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGF  139 (563)
Q Consensus        92 ~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~  139 (563)
                            .++. ++|+||+.+....+...+.   .++++|+| .||.|+
T Consensus        50 ------~~l~-~~DVvIDft~p~a~~~~~~---l~~g~~vV-igTTG~   86 (243)
T 3qy9_A           50 ------ADVK-GADVAIDFSNPNLLFPLLD---EDFHLPLV-VATTGE   86 (243)
T ss_dssp             ------TTCT-TCSEEEECSCHHHHHHHHT---SCCCCCEE-ECCCSS
T ss_pred             ------HHHh-CCCEEEEeCChHHHHHHHH---HhcCCceE-eCCCCC
Confidence                  2334 8999999876444444443   78899998 467776

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=91.51  E-value=0.4  Score=46.70  Aligned_cols=36  Identities=19%  Similarity=0.493  Sum_probs=30.6

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .+++++++|.| .||||.++++.|+..|. ++.++|.+
T Consensus         5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~   41 (255)
T 4eso_A            5 NYQGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRN   41 (255)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            46778899998 68999999999999997 68887743

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=91.50  E-value=0.15  Score=50.50  Aligned_cols=33  Identities=27%  Similarity=0.457  Sum_probs=30.0

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEe
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      +.+++++|+|+||+|..+++.|+..| .+++++|
T Consensus       117 l~~k~vlViGaGg~g~a~a~~L~~~G-~~V~v~~  149 (271)
T 1nyt_A          117 RPGLRILLIGAGGASRGVLLPLLSLD-CAVTITN  149 (271)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEC
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHcC-CEEEEEE
Confidence            46789999999999999999999999 6898875

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=91.45  E-value=0.28  Score=48.62  Aligned_cols=35  Identities=26%  Similarity=0.504  Sum_probs=29.3

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .|++++++|.| .||||.++++.|+..|. ++.++|.
T Consensus        26 ~l~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r   61 (277)
T 3gvc_A           26 DLAGKVAIVTGAGAGIGLAVARRLADEGC-HVLCADI   61 (277)
T ss_dssp             -CTTCEEEETTTTSTHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            46778888887 68999999999999997 6888774

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=91.45  E-value=0.37  Score=44.72  Aligned_cols=35  Identities=20%  Similarity=0.234  Sum_probs=29.1

Q ss_pred             cCCcEEEEC-CcHHHHHHHHHHHHhCC-CeEEEEeCC
Q 008516           11 KGAKVLMVG-AGGIGCELLKTLALSGF-QDIHIIDMD   45 (563)
Q Consensus        11 ~~~~VlvvG-aGgiG~ellknLal~Gv-g~I~iiD~D   45 (563)
                      +.++|+|.| .|++|.++++.|+..|. .++++++.+
T Consensus         4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~   40 (215)
T 2a35_A            4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARK   40 (215)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSS
T ss_pred             CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence            457899999 79999999999999996 477776643

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=91.44  E-value=0.38  Score=45.94  Aligned_cols=34  Identities=29%  Similarity=0.496  Sum_probs=28.3

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +++++++|.| .||||.++++.|+..|. ++.++|.
T Consensus         5 ~~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r   39 (248)
T 2pnf_A            5 LQGKVSLVTGSTRGIGRAIAEKLASAGS-TVIITGT   39 (248)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            4567888887 68999999999999996 6777764

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=91.43  E-value=0.31  Score=47.67  Aligned_cols=56  Identities=11%  Similarity=0.208  Sum_probs=38.4

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchH
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK   67 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~K   67 (563)
                      ++++++++|.| .||||.++++.|+..|. ++.++|.+.-...+.  +..+-.-|+..+.
T Consensus        25 ~~~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~--~~~~~~~Dv~d~~   81 (260)
T 3un1_A           25 RNQQKVVVITGASQGIGAGLVRAYRDRNY-RVVATSRSIKPSADP--DIHTVAGDISKPE   81 (260)
T ss_dssp             HTTCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSCCCCSST--TEEEEESCTTSHH
T ss_pred             CcCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChhhcccC--ceEEEEccCCCHH
Confidence            46778888988 58999999999999997 688888654333222  1222344565543

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=91.40  E-value=0.28  Score=48.60  Aligned_cols=36  Identities=22%  Similarity=0.374  Sum_probs=30.7

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .+.+++++|.| .||||.++++.|+..|. ++.++|.+
T Consensus        13 ~l~gk~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~   49 (291)
T 3rd5_A           13 SFAQRTVVITGANSGLGAVTARELARRGA-TVIMAVRD   49 (291)
T ss_dssp             CCTTCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECC
Confidence            46788899998 58999999999999996 68888754

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=91.38  E-value=0.35  Score=49.85  Aligned_cols=90  Identities=18%  Similarity=0.227  Sum_probs=53.6

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      .|.+++|.|||+|.+|..+++.|...|+ ++...|...-.             ..+                 ..  .  
T Consensus       168 ~l~gktiGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~-------------~~~-----------------~~--~--  212 (340)
T 4dgs_A          168 SPKGKRIGVLGLGQIGRALASRAEAFGM-SVRYWNRSTLS-------------GVD-----------------WI--A--  212 (340)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCCT-------------TSC-----------------CE--E--
T ss_pred             cccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCccc-------------ccC-----------------ce--e--
Confidence            4778999999999999999999998887 67777643210             001                 00  0  


Q ss_pred             cCCCCCcchHhhcccccEEEEccC-CHHHHHHHHHHHH---hcCCCEEEecccc
Q 008516           89 ANVKDPKFNVEFFKQFNVVLNGLD-NLDARRHVNRLCL---AADVPLVESGTTG  138 (563)
Q Consensus        89 ~~i~~~~~~~~~~~~~dvVi~alD-n~~ar~~in~~c~---~~~~pli~~gt~G  138 (563)
                        .   ....+.++++|+|+.++- +.+.+..+++...   +.+.-+|+.+..+
T Consensus       213 --~---~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~  261 (340)
T 4dgs_A          213 --H---QSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGN  261 (340)
T ss_dssp             --C---SSHHHHHHTCSEEEECC----------CHHHHHHTTTTCEEEECSCC-
T ss_pred             --c---CCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCc
Confidence              0   113577899999999875 4556666644332   3455677776543

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=91.36  E-value=0.63  Score=45.62  Aligned_cols=34  Identities=29%  Similarity=0.490  Sum_probs=28.7

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +++++++|.| .||||.++++.|+..|. ++.++|.
T Consensus        19 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r   53 (273)
T 1ae1_A           19 LKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSR   53 (273)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeC
Confidence            5677899998 68999999999999996 5777764

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=91.34  E-value=0.27  Score=47.84  Aligned_cols=35  Identities=31%  Similarity=0.672  Sum_probs=29.5

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +.+++++|.| .||||.++++.|+..|. ++.++|.+
T Consensus        10 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   45 (263)
T 3ak4_A           10 LSGRKAIVTGGSKGIGAAIARALDKAGA-TVAIADLD   45 (263)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5677899998 68999999999999997 68887754

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=91.33  E-value=0.42  Score=47.65  Aligned_cols=35  Identities=31%  Similarity=0.425  Sum_probs=29.3

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +|++++++|.| .||||.++++.|+..|. ++.++|.
T Consensus        46 ~l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~   81 (294)
T 3r3s_A           46 RLKDRKALVTGGDSGIGRAAAIAYAREGA-DVAINYL   81 (294)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            46788899998 68999999999999997 5667653

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=91.33  E-value=0.39  Score=47.36  Aligned_cols=36  Identities=17%  Similarity=0.346  Sum_probs=27.7

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .+.+++++|.| .||||.++++.|+..|. ++.++|.+
T Consensus        25 ~~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~   61 (272)
T 4dyv_A           25 KTGKKIAIVTGAGSGVGRAVAVALAGAGY-GVALAGRR   61 (272)
T ss_dssp             ---CCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            45667788887 58999999999999997 58887743

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=91.32  E-value=0.44  Score=45.99  Aligned_cols=35  Identities=26%  Similarity=0.488  Sum_probs=29.3

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +++++|+|.| .||||.++++.|+..|. ++.++|.+
T Consensus        10 ~~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~   45 (265)
T 2o23_A           10 VKGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLP   45 (265)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECT
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5678899998 68999999999999997 67777643

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=91.29  E-value=0.48  Score=46.79  Aligned_cols=37  Identities=19%  Similarity=0.283  Sum_probs=28.4

Q ss_pred             HHHHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            7 LEAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         7 q~kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ...|.+++++|.| .||||.++++.|+..|. ++.++|.
T Consensus        18 ~~~l~~k~~lVTGas~gIG~aia~~L~~~G~-~V~~~~r   55 (288)
T 2x9g_A           18 GSHMEAPAAVVTGAAKRIGRAIAVKLHQTGY-RVVIHYH   55 (288)
T ss_dssp             ----CCCEEEETTCSSHHHHHHHHHHHHHTC-EEEEEES
T ss_pred             CcCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-eEEEEeC
Confidence            3457788888888 68999999999999996 6777763

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=91.26  E-value=0.69  Score=47.50  Aligned_cols=87  Identities=20%  Similarity=0.264  Sum_probs=53.6

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      +|++++++|.| .||||.++++.|+..|. ++.++|.+.-....+.          +  +.+.+++.+.+..  .++..+
T Consensus        42 ~l~gk~vlVTGas~GIG~aia~~La~~Ga-~Vvl~~r~~~~~~~l~----------~--~l~~~~~~~~~~g--~~~~~~  106 (346)
T 3kvo_A           42 RLAGCTVFITGASRGIGKAIALKAAKDGA-NIVIAAKTAQPHPKLL----------G--TIYTAAEEIEAVG--GKALPC  106 (346)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSC----------C--CHHHHHHHHHHTT--CEEEEE
T ss_pred             CCCCCEEEEeCCChHHHHHHHHHHHHCCC-EEEEEECChhhhhhhH----------H--HHHHHHHHHHhcC--CeEEEE
Confidence            46788899998 58999999999999997 6888876543222211          1  1223344444443  456666


Q ss_pred             ccCCCCCcchHhh-------cccccEEEEc
Q 008516           88 HANVKDPKFNVEF-------FKQFNVVLNG  110 (563)
Q Consensus        88 ~~~i~~~~~~~~~-------~~~~dvVi~a  110 (563)
                      ..++++...-..+       +.+.|+||++
T Consensus       107 ~~Dv~d~~~v~~~~~~~~~~~g~iDilVnn  136 (346)
T 3kvo_A          107 IVDVRDEQQISAAVEKAIKKFGGIDILVNN  136 (346)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             EccCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            6666543222222       2367877774

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=91.19  E-value=0.34  Score=47.83  Aligned_cols=33  Identities=33%  Similarity=0.514  Sum_probs=27.5

Q ss_pred             CCcEEEECC-cHHHHHHHHHHHHh--CCCeEEEEeCC
Q 008516           12 GAKVLMVGA-GGIGCELLKTLALS--GFQDIHIIDMD   45 (563)
Q Consensus        12 ~~~VlvvGa-GgiG~ellknLal~--Gvg~I~iiD~D   45 (563)
                      +++|+|.|+ |.||..+++.|...  |. +++++|.+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r~   37 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGTE-NVIASDIR   37 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCGG-GEEEEESC
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCCC-EEEEEcCC
Confidence            478999996 99999999999988  54 67777743

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=91.17  E-value=1  Score=45.43  Aligned_cols=116  Identities=19%  Similarity=0.286  Sum_probs=62.6

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC-
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV-   91 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i-   91 (563)
                      +||-+||+|..|..+++||+..|. .+++.|.+.=....+.        +.|-..+...++.++.  .++-+......- 
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G~-~v~v~dr~~~~~~~l~--------~~Ga~~a~s~~e~~~~--~dvv~~~l~~~~~   72 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAGY-LLNVFDLVQSAVDGLV--------AAGASAARSARDAVQG--ADVVISMLPASQH   72 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSSHHHHHHHH--------HTTCEECSSHHHHHTT--CSEEEECCSCHHH
T ss_pred             CEEEEeeehHHHHHHHHHHHhCCC-eEEEEcCCHHHHHHHH--------HcCCEEcCCHHHHHhc--CCceeecCCchHH
Confidence            479999999999999999999997 5777763321111110        0111111112222221  222222222110 


Q ss_pred             -CC----CcchHhhcccccEEEE-ccCCHHHHHHHHHHHHhcCCCEEEeccccc
Q 008516           92 -KD----PKFNVEFFKQFNVVLN-GLDNLDARRHVNRLCLAADVPLVESGTTGF  139 (563)
Q Consensus        92 -~~----~~~~~~~~~~~dvVi~-alDn~~ar~~in~~c~~~~~pli~~gt~G~  139 (563)
                       .+    ..--....+.=++||+ ++-+++.-+.+.+.+...++-++|+.+.|.
T Consensus        73 v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~~lDaPVsGg  126 (300)
T 3obb_A           73 VEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGG  126 (300)
T ss_dssp             HHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESC
T ss_pred             HHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEecCCCCC
Confidence             00    0000111233357777 455677777788888888998998877663

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=91.17  E-value=0.16  Score=51.25  Aligned_cols=118  Identities=14%  Similarity=0.202  Sum_probs=62.2

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      ++.||.+||+|-.|..+++||+..|+ ++++.|.+.=....+.        ..|-.-+...++.++  ..++-+......
T Consensus         4 Ms~kIgfIGLG~MG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~--------~~G~~~~~s~~e~~~--~~dvvi~~l~~~   72 (297)
T 4gbj_A            4 MSEKIAFLGLGNLGTPIAEILLEAGY-ELVVWNRTASKAEPLT--------KLGATVVENAIDAIT--PGGIVFSVLADD   72 (297)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHHTTC-EEEEC-------CTTT--------TTTCEECSSGGGGCC--TTCEEEECCSSH
T ss_pred             CCCcEEEEecHHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHH--------HcCCeEeCCHHHHHh--cCCceeeeccch
Confidence            45789999999999999999999998 5777774432222221        112111111111111  112222222111


Q ss_pred             C-CCCcc---hHhhcccccEEEE-ccCCHHHHHHHHHHHHhcCCCEEEeccccc
Q 008516           91 V-KDPKF---NVEFFKQFNVVLN-GLDNLDARRHVNRLCLAADVPLVESGTTGF  139 (563)
Q Consensus        91 i-~~~~~---~~~~~~~~dvVi~-alDn~~ar~~in~~c~~~~~pli~~gt~G~  139 (563)
                      . .+...   .....+.-++||+ ++-+++.-+.+.+.+...++-++++...|.
T Consensus        73 ~~~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~ldapVsGg  126 (297)
T 4gbj_A           73 AAVEELFSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYVGAPIFAR  126 (297)
T ss_dssp             HHHHHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECC
T ss_pred             hhHHHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHhcCCceecCCcCCC
Confidence            0 00000   1122344457776 445567677778888888888888887763

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=91.16  E-value=0.55  Score=46.39  Aligned_cols=34  Identities=21%  Similarity=0.384  Sum_probs=28.9

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +.+++++|.| .||||.++++.|+..|. ++.++|.
T Consensus        25 l~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r   59 (277)
T 4dqx_A           25 LNQRVCIVTGGGSGIGRATAELFAKNGA-YVVVADV   59 (277)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            5677888888 68999999999999997 6778764

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=91.15  E-value=0.75  Score=45.31  Aligned_cols=63  Identities=17%  Similarity=0.302  Sum_probs=45.9

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      .|+++.++|-| .+|||-++++.|+..|. ++.++|.+                   +.+.+.+++.+++..  .++..+
T Consensus         4 sL~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~-------------------~~~~~~~~~~i~~~g--~~~~~~   61 (254)
T 4fn4_A            4 SLKNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELL-------------------EDRLNQIVQELRGMG--KEVLGV   61 (254)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTT--CCEEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECC-------------------HHHHHHHHHHHHhcC--CcEEEE
Confidence            47888888987 68999999999999997 57777732                   245666666776654  355566


Q ss_pred             ccCCCC
Q 008516           88 HANVKD   93 (563)
Q Consensus        88 ~~~i~~   93 (563)
                      ..++++
T Consensus        62 ~~Dvt~   67 (254)
T 4fn4_A           62 KADVSK   67 (254)
T ss_dssp             ECCTTS
T ss_pred             EccCCC
Confidence            666643

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=91.07  E-value=0.44  Score=46.80  Aligned_cols=35  Identities=26%  Similarity=0.493  Sum_probs=29.1

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .+++++++|.| .||||.++++.|+..|. ++.++|.
T Consensus        24 ~l~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r   59 (266)
T 3grp_A           24 KLTGRKALVTGATGGIGEAIARCFHAQGA-IVGLHGT   59 (266)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            36678888888 68999999999999996 6777764

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=91.06  E-value=0.68  Score=51.59  Aligned_cols=106  Identities=19%  Similarity=0.303  Sum_probs=63.3

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHh-CCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEE
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALS-GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITA   86 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~-Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~   86 (563)
                      .++.++|+|.| .|.||+++++.|+.. |. +++++|...-   ++.+ .                      ....+++.
T Consensus       312 ~~~~~~VLVTGatG~IG~~l~~~Ll~~~g~-~V~~~~r~~~---~~~~-~----------------------~~~~~v~~  364 (660)
T 1z7e_A          312 ARRRTRVLILGVNGFIGNHLTERLLREDHY-EVYGLDIGSD---AISR-F----------------------LNHPHFHF  364 (660)
T ss_dssp             --CCEEEEEETTTSHHHHHHHHHHHHSSSE-EEEEEESCCT---TTGG-G----------------------TTCTTEEE
T ss_pred             hccCceEEEEcCCcHHHHHHHHHHHhcCCC-EEEEEEcCch---hhhh-h----------------------ccCCceEE
Confidence            35667899999 599999999999997 65 6777775421   1111 0                      00123555


Q ss_pred             eccCCCCCc-chHhhcccccEEEEccC--C---------------HHHHHHHHHHHHhcCCCEEEecccccee
Q 008516           87 HHANVKDPK-FNVEFFKQFNVVLNGLD--N---------------LDARRHVNRLCLAADVPLVESGTTGFLG  141 (563)
Q Consensus        87 ~~~~i~~~~-~~~~~~~~~dvVi~alD--n---------------~~ar~~in~~c~~~~~pli~~gt~G~~G  141 (563)
                      +..++++.. .-...++++|+||.+..  +               ...-..+-+.|...+..+|..++.+.+|
T Consensus       365 v~~Dl~d~~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~r~V~~SS~~vyg  437 (660)
T 1z7e_A          365 VEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYG  437 (660)
T ss_dssp             EECCTTTCHHHHHHHHHHCSEEEECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEECCGGGGB
T ss_pred             EECCCCCcHHHHHHhhcCCCEEEECceecCccccccCHHHHHHhhhHHHHHHHHHHHHhCCEEEEEecHHHcC
Confidence            566665432 12345678899988421  1               1122344556666677788877766554

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=91.06  E-value=0.53  Score=45.53  Aligned_cols=36  Identities=31%  Similarity=0.576  Sum_probs=30.0

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .+++++++|.| .||||.++++.|+..|. ++.++|.+
T Consensus         6 ~l~~k~vlITGas~gIG~~~a~~l~~~G~-~V~~~~r~   42 (261)
T 3n74_A            6 SLEGKVALITGAGSGFGEGMAKRFAKGGA-KVVIVDRD   42 (261)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCC
Confidence            35678899998 57999999999999996 58887743

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=91.05  E-value=0.18  Score=53.19  Aligned_cols=34  Identities=29%  Similarity=0.544  Sum_probs=31.8

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEe
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      +.+.+|+|+|+|++|..+++.|...|+++++++|
T Consensus       165 l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~  198 (404)
T 1gpj_A          165 LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVAN  198 (404)
T ss_dssp             CTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEEC
T ss_pred             ccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEe
Confidence            5789999999999999999999999999999986

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=91.05  E-value=0.18  Score=50.32  Aligned_cols=68  Identities=21%  Similarity=0.317  Sum_probs=48.9

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      .+++++|+|+||.|..++..|...|+.+|+|++.+                   ..|++.+++.+.     ..+.   ..
T Consensus       118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt-------------------~~ka~~la~~~~-----~~~~---~~  170 (271)
T 1npy_A          118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN-------------------VKTGQYLAALYG-----YAYI---NS  170 (271)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSC-------------------HHHHHHHHHHHT-----CEEE---SC
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC-------------------HHHHHHHHHHcC-----Cccc---hh
Confidence            35789999999999999999999999999997522                   246666665542     1111   11


Q ss_pred             CCCCcchHhhcccccEEEEccCC
Q 008516           91 VKDPKFNVEFFKQFNVVLNGLDN  113 (563)
Q Consensus        91 i~~~~~~~~~~~~~dvVi~alDn  113 (563)
                      .       . ..++|+||+++..
T Consensus       171 ~-------~-~~~~DivInaTp~  185 (271)
T 1npy_A          171 L-------E-NQQADILVNVTSI  185 (271)
T ss_dssp             C-------T-TCCCSEEEECSST
T ss_pred             h-------h-cccCCEEEECCCC
Confidence            1       1 3579999999753

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=91.05  E-value=0.5  Score=45.45  Aligned_cols=33  Identities=30%  Similarity=0.476  Sum_probs=27.1

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEe
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      |++++++|.| .||||.++++.|+..|. ++.++|
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~   35 (246)
T 2uvd_A            2 LKGKVALVTGASRGIGRAIAIDLAKQGA-NVVVNY   35 (246)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEe
Confidence            3567788887 68999999999999997 566665

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=91.04  E-value=0.17  Score=54.10  Aligned_cols=35  Identities=23%  Similarity=0.550  Sum_probs=32.8

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCC--CeEEEEe
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGF--QDIHIID   43 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gv--g~I~iiD   43 (563)
                      .+.+.+|+|+|+||.|..+++.|...|+  ++|+++|
T Consensus       183 ~l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd  219 (439)
T 2dvm_A          183 KISEITLALFGAGAAGFATLRILTEAGVKPENVRVVE  219 (439)
T ss_dssp             CTTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred             CccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEE
Confidence            3678899999999999999999999999  8999998

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=91.03  E-value=0.5  Score=45.75  Aligned_cols=33  Identities=33%  Similarity=0.586  Sum_probs=27.6

Q ss_pred             HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEe
Q 008516           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD   43 (563)
                      |.+++++|.|+ ||||.++++.|+..|. ++.++|
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~   35 (255)
T 2q2v_A            2 LKGKTALVTGSTSGIGLGIAQVLARAGA-NIVLNG   35 (255)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEe
Confidence            45678888884 8999999999999997 577765

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=91.00  E-value=0.41  Score=47.92  Aligned_cols=33  Identities=15%  Similarity=0.274  Sum_probs=29.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ..+|.|||+|.+|..++++|+..|. +++++|.+
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~-~V~~~dr~   47 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPG-GVTVYDIR   47 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTT-CEEEECSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            4689999999999999999999996 68887744

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=90.99  E-value=1  Score=44.10  Aligned_cols=92  Identities=21%  Similarity=0.204  Sum_probs=53.6

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      .+++++++|.| .||||.++++.|+..|. ++.++|.+.-..  .     .....-...+.+...+.+.+..  .++..+
T Consensus         7 ~l~~k~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~   76 (281)
T 3s55_A            7 DFEGKTALITGGARGMGRSHAVALAEAGA-DIAICDRCENSD--V-----VGYPLATADDLAETVALVEKTG--RRCISA   76 (281)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCT--T-----CSSCCCCHHHHHHHHHHHHHTT--CCEEEE
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCcccc--c-----cccccccHHHHHHHHHHHHhcC--CeEEEE
Confidence            57788999998 68999999999999997 588888542110  0     0000112233444444455443  356666


Q ss_pred             ccCCCCCcchHhhc-------ccccEEEEc
Q 008516           88 HANVKDPKFNVEFF-------KQFNVVLNG  110 (563)
Q Consensus        88 ~~~i~~~~~~~~~~-------~~~dvVi~a  110 (563)
                      ..++++...-..++       .+.|++|++
T Consensus        77 ~~Dv~~~~~v~~~~~~~~~~~g~id~lv~n  106 (281)
T 3s55_A           77 KVDVKDRAALESFVAEAEDTLGGIDIAITN  106 (281)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHTCCCEEEEC
T ss_pred             eCCCCCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence            66665432222222       356777764

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=90.96  E-value=0.37  Score=46.76  Aligned_cols=35  Identities=23%  Similarity=0.502  Sum_probs=29.3

Q ss_pred             HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      |++++++|.|+ ||||.++++.|+..|. ++.++|.+
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   38 (254)
T 1hdc_A            3 LSGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVL   38 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            56788999985 8999999999999997 57777643

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=90.96  E-value=0.37  Score=48.99  Aligned_cols=88  Identities=14%  Similarity=0.049  Sum_probs=59.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i   91 (563)
                      +.+|+|+|+|.+|..+++.|...|.  ++++|.|.                   .+.+ ++    +  ++  +..+.++.
T Consensus       115 ~~~viI~G~G~~g~~l~~~L~~~g~--v~vid~~~-------------------~~~~-~~----~--~~--~~~i~gd~  164 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLRELRGSEV--FVLAEDEN-------------------VRKK-VL----R--SG--ANFVHGDP  164 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTGGGSCE--EEEESCGG-------------------GHHH-HH----H--TT--CEEEESCT
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCc--EEEEeCCh-------------------hhhh-HH----h--CC--cEEEEeCC
Confidence            4589999999999999999999887  88887553                   1222 22    1  22  34455555


Q ss_pred             CCCcch-HhhcccccEEEEccCCHHHHHHHHHHHHhcCC
Q 008516           92 KDPKFN-VEFFKQFNVVLNGLDNLDARRHVNRLCLAADV  129 (563)
Q Consensus        92 ~~~~~~-~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~  129 (563)
                      ++...- ..-++++|.|+.++++.+.-..+-..+++.+.
T Consensus       165 ~~~~~L~~a~i~~a~~vi~~~~~d~~n~~~~~~ar~~~~  203 (336)
T 1lnq_A          165 TRVSDLEKANVRGARAVIVDLESDSETIHCILGIRKIDE  203 (336)
T ss_dssp             TSHHHHHHTCSTTEEEEEECCSSHHHHHHHHHHHHTTCT
T ss_pred             CCHHHHHhcChhhccEEEEcCCccHHHHHHHHHHHHHCC
Confidence            433221 12267899999999887766666667776654

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=90.90  E-value=0.59  Score=44.86  Aligned_cols=33  Identities=18%  Similarity=0.404  Sum_probs=27.3

Q ss_pred             cCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        11 ~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ..++++|.| .||||.++++.|+..|. ++.++|.
T Consensus         2 s~k~vlVTGas~GIG~a~a~~l~~~G~-~V~~~~r   35 (235)
T 3l6e_A            2 SLGHIIVTGAGSGLGRALTIGLVERGH-QVSMMGR   35 (235)
T ss_dssp             -CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            356788998 58999999999999997 5777764

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=90.90  E-value=0.55  Score=46.50  Aligned_cols=32  Identities=34%  Similarity=0.531  Sum_probs=25.5

Q ss_pred             cEEEEC-CcHHHHHHHHHHHHh-CCCeEEEEeCC
Q 008516           14 KVLMVG-AGGIGCELLKTLALS-GFQDIHIIDMD   45 (563)
Q Consensus        14 ~VlvvG-aGgiG~ellknLal~-Gvg~I~iiD~D   45 (563)
                      +|+|.| .|.||..+++.|+.. |-.+++++|..
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~   34 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIV   34 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESS
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCC
Confidence            589999 599999999999988 32367777743

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=90.90  E-value=0.52  Score=45.73  Aligned_cols=34  Identities=24%  Similarity=0.416  Sum_probs=28.2

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      |.+++++|.| .||||.++++.|+..|. ++.++|.
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r   37 (260)
T 2qq5_A            3 MNGQVCVVTGASRGIGRGIALQLCKAGA-TVYITGR   37 (260)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            5667788887 68999999999999996 6777763

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=90.89  E-value=0.31  Score=46.41  Aligned_cols=35  Identities=26%  Similarity=0.351  Sum_probs=29.0

Q ss_pred             cCCcEEEEC-CcHHHHHHHHHHHHhCC-CeEEEEeCC
Q 008516           11 KGAKVLMVG-AGGIGCELLKTLALSGF-QDIHIIDMD   45 (563)
Q Consensus        11 ~~~~VlvvG-aGgiG~ellknLal~Gv-g~I~iiD~D   45 (563)
                      ++++|+|.| .||||.++++.|+..|- .++.++|.+
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~   38 (250)
T 1yo6_A            2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARD   38 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESS
T ss_pred             CCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecC
Confidence            456788887 68999999999999994 578888754

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=90.87  E-value=0.79  Score=44.39  Aligned_cols=32  Identities=38%  Similarity=0.667  Sum_probs=26.7

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        12 ~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +++++|.| .||||.++++.|+..|. ++.++|.
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r   34 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGF-DIAVADL   34 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEEC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            46788887 68999999999999997 5777763

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=90.86  E-value=0.48  Score=46.60  Aligned_cols=34  Identities=24%  Similarity=0.404  Sum_probs=28.7

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +.+++++|.| .||||.++++.|+..|. ++.++|.
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r   38 (280)
T 1xkq_A            4 FSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGR   38 (280)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence            5677888887 68999999999999997 6777764

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=90.85  E-value=0.64  Score=44.43  Aligned_cols=32  Identities=16%  Similarity=0.357  Sum_probs=27.1

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        12 ~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +++++|.| .||||.++++.|+..|. ++.++|.
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~-~V~~~~r   34 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGD-RVAALDL   34 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            46789998 58999999999999996 6888764

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=90.85  E-value=0.55  Score=46.08  Aligned_cols=33  Identities=24%  Similarity=0.385  Sum_probs=27.2

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEe
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      +++++++|.| .||||.++++.|+..|. ++.++|
T Consensus        26 l~~k~vlVTGas~gIG~aia~~la~~G~-~V~~~~   59 (269)
T 4dmm_A           26 LTDRIALVTGASRGIGRAIALELAAAGA-KVAVNY   59 (269)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEe
Confidence            5677788888 58999999999999997 466655

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=90.85  E-value=0.76  Score=46.75  Aligned_cols=73  Identities=14%  Similarity=0.103  Sum_probs=51.9

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHh-CCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALS-GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~-Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      ...+++|||+|++|...++.|... ++.++.+.|.                   ...|++.+++.+....  +.+. . .
T Consensus       124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r-------------------~~~~a~~la~~~~~~~--~~~~-~-~  180 (322)
T 1omo_A          124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDV-------------------REKAAKKFVSYCEDRG--ISAS-V-Q  180 (322)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECS-------------------SHHHHHHHHHHHHHTT--CCEE-E-C
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECC-------------------CHHHHHHHHHHHHhcC--ceEE-E-C
Confidence            457899999999999999999874 6888888762                   2357777777665421  2332 2 1


Q ss_pred             CCCCCcchHhhcccccEEEEccCC
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGLDN  113 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~alDn  113 (563)
                      +      ..+.+ ++|+|++|+-+
T Consensus       181 ~------~~e~v-~aDvVi~aTp~  197 (322)
T 1omo_A          181 P------AEEAS-RCDVLVTTTPS  197 (322)
T ss_dssp             C------HHHHT-SSSEEEECCCC
T ss_pred             C------HHHHh-CCCEEEEeeCC
Confidence            1      23456 89999999875

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=90.83  E-value=0.35  Score=47.65  Aligned_cols=32  Identities=31%  Similarity=0.558  Sum_probs=27.5

Q ss_pred             cEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           14 KVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        14 ~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +|+|.|+ |.||..+++.|...|..+++++|..
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~   33 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNL   33 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECC
T ss_pred             CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccC
Confidence            5899996 9999999999999996678887754

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=90.83  E-value=0.39  Score=49.67  Aligned_cols=89  Identities=13%  Similarity=0.193  Sum_probs=52.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHH--hhCCCceEEEecc
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVL--KFRPQMSITAHHA   89 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~--~~np~v~I~~~~~   89 (563)
                      ..||.|+|+|.+|+.++..|+..|. +++++|.+.-                   +++.+.+.-.  ..-|++.+   ..
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~-~V~l~~r~~~-------------------~~~~i~~~~~~~~~l~g~~l---~~   85 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQ-KVRLWSYESD-------------------HVDEMQAEGVNNRYLPNYPF---PE   85 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTC-CEEEECSCHH-------------------HHHHHHHHSSBTTTBTTCCC---CT
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHH-------------------HHHHHHHcCCCcccCCCCcc---CC
Confidence            4689999999999999999999996 5888775421                   2222222100  01122221   11


Q ss_pred             CCCCCcchHhhcccccEEEEccCCHHHHHHHHHH
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL  123 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~  123 (563)
                      ++.-.....+.++++|+||.++-....+..+.++
T Consensus        86 ~i~~t~d~~ea~~~aDvVilaVp~~~~~~vl~~i  119 (356)
T 3k96_A           86 TLKAYCDLKASLEGVTDILIVVPSFAFHEVITRM  119 (356)
T ss_dssp             TEEEESCHHHHHTTCCEEEECCCHHHHHHHHHHH
T ss_pred             CeEEECCHHHHHhcCCEEEECCCHHHHHHHHHHH
Confidence            1100011234578899999999766555555544

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=90.81  E-value=0.36  Score=49.14  Aligned_cols=72  Identities=14%  Similarity=0.154  Sum_probs=50.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHh-CCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALS-GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~-Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      .++++|||+|.+|...++.|... ++.+|++.|.+                     |++..++.+.+.. ++.+...  +
T Consensus       121 ~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~---------------------~a~~la~~l~~~~-g~~~~~~--~  176 (313)
T 3hdj_A          121 SSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY---------------------ASPEILERIGRRC-GVPARMA--A  176 (313)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT---------------------CCHHHHHHHHHHH-TSCEEEC--C
T ss_pred             CcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc---------------------HHHHHHHHHHHhc-CCeEEEe--C
Confidence            56899999999999999999874 78899997643                     3344445444321 3444433  2


Q ss_pred             CCCCcchHhhcccccEEEEccCC
Q 008516           91 VKDPKFNVEFFKQFNVVLNGLDN  113 (563)
Q Consensus        91 i~~~~~~~~~~~~~dvVi~alDn  113 (563)
                            ..+.++++|+|+.|+-.
T Consensus       177 ------~~eav~~aDIVi~aT~s  193 (313)
T 3hdj_A          177 ------PADIAAQADIVVTATRS  193 (313)
T ss_dssp             ------HHHHHHHCSEEEECCCC
T ss_pred             ------HHHHHhhCCEEEEccCC
Confidence                  24567899999999864

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=90.79  E-value=0.35  Score=46.22  Aligned_cols=29  Identities=24%  Similarity=0.391  Sum_probs=25.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEE
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHI   41 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~i   41 (563)
                      -.||.|||+|.+|..+++.|+..|. ++++
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~-~V~~   51 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQI-PAII   51 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTC-CEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEE
Confidence            4689999999999999999999997 4555

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=90.75  E-value=0.39  Score=47.56  Aligned_cols=35  Identities=23%  Similarity=0.473  Sum_probs=26.9

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .+.+++++|.| .||||.++++.|+..|. ++.++|.
T Consensus        30 ~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r   65 (281)
T 4dry_A           30 SGEGRIALVTGGGTGVGRGIAQALSAEGY-SVVITGR   65 (281)
T ss_dssp             ----CEEEETTTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            46778888888 58999999999999997 5777764

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=90.75  E-value=0.66  Score=47.03  Aligned_cols=32  Identities=28%  Similarity=0.427  Sum_probs=26.8

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        13 ~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ++|+|.| .|+||..+++.|+..|. +++++|.+
T Consensus         2 ~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   34 (372)
T 1db3_A            2 KVALITGVTGQDGSYLAEFLLEKGY-EVHGIKRR   34 (372)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECC-
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC-EEEEEECC
Confidence            5799999 59999999999999995 78887643

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=90.75  E-value=0.63  Score=45.31  Aligned_cols=35  Identities=23%  Similarity=0.451  Sum_probs=29.4

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      |.+++++|.| .||||.++++.|+..|. ++.++|.+
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   40 (260)
T 1nff_A            5 LTGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDIL   40 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            6678899998 68999999999999997 67777643

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=90.73  E-value=0.72  Score=45.99  Aligned_cols=100  Identities=18%  Similarity=0.189  Sum_probs=60.0

Q ss_pred             cCCcEEEEC-CcHHHHHHHHHHHHh-CCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516           11 KGAKVLMVG-AGGIGCELLKTLALS-GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        11 ~~~~VlvvG-aGgiG~ellknLal~-Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      ...||.|+| +|.+|.++++.+... ++.-+-++|...-.         +.-.|+|.    .+     .+.+++.+    
T Consensus         6 ~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~---------~~G~d~ge----l~-----g~~~gv~v----   63 (272)
T 4f3y_A            6 SSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSP---------QLGQDAGA----FL-----GKQTGVAL----   63 (272)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCT---------TTTSBTTT----TT-----TCCCSCBC----
T ss_pred             cccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcc---------cccccHHH----Hh-----CCCCCcee----
Confidence            346899999 899999999999865 33223334432100         01123331    11     12222221    


Q ss_pred             cCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccc
Q 008516           89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGF  139 (563)
Q Consensus        89 ~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~  139 (563)
                         ..  .-++.+.++|+||+++. +++-...-+.|.++++|+|- ||.|+
T Consensus        64 ---~~--dl~~ll~~~DVVIDfT~-p~a~~~~~~~al~~G~~vVi-gTTG~  107 (272)
T 4f3y_A           64 ---TD--DIERVCAEADYLIDFTL-PEGTLVHLDAALRHDVKLVI-GTTGF  107 (272)
T ss_dssp             ---BC--CHHHHHHHCSEEEECSC-HHHHHHHHHHHHHHTCEEEE-CCCCC
T ss_pred             ---cC--CHHHHhcCCCEEEEcCC-HHHHHHHHHHHHHcCCCEEE-ECCCC
Confidence               11  12455678999999985 55555666789999999885 66675

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=90.72  E-value=0.59  Score=44.51  Aligned_cols=28  Identities=25%  Similarity=0.496  Sum_probs=23.3

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCeEEE
Q 008516           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHI   41 (563)
Q Consensus        13 ~~VlvvG-aGgiG~ellknLal~Gvg~I~i   41 (563)
                      ++|+|.| .||||.++++.|+..|. ++.+
T Consensus         2 k~vlVTGasggiG~~la~~l~~~G~-~v~~   30 (244)
T 1edo_A            2 PVVVVTGASRGIGKAIALSLGKAGC-KVLV   30 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC-EEEE
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC-EEEE
Confidence            5678887 68999999999999997 4555

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=90.67  E-value=0.56  Score=46.25  Aligned_cols=33  Identities=33%  Similarity=0.352  Sum_probs=27.2

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEe
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      +.+++|+|.| .||||.++++.|+..|. ++.+++
T Consensus        42 l~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~   75 (285)
T 2c07_A           42 GENKVALVTGAGRGIGREIAKMLAKSVS-HVICIS   75 (285)
T ss_dssp             CSSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEc
Confidence            4567899998 68999999999999986 566665

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=90.61  E-value=0.84  Score=45.94  Aligned_cols=106  Identities=17%  Similarity=0.194  Sum_probs=58.6

Q ss_pred             HHHHHHcC-CcEEEEC-CcHHHHHHHHHHHHh-CCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC-C
Q 008516            5 RQLEAIKG-AKVLMVG-AGGIGCELLKTLALS-GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR-P   80 (563)
Q Consensus         5 ~~q~kL~~-~~VlvvG-aGgiG~ellknLal~-Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~n-p   80 (563)
                      |.|..+.. .||.|+| +|.+|..+++.+... ++.-+-++|...-   .      +.-.|+|.    .     ..+. .
T Consensus        13 ~~~~~m~~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~---~------~~G~d~ge----l-----~G~~~~   74 (288)
T 3ijp_A           13 EAQTQGPGSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGS---S------FVDKDASI----L-----IGSDFL   74 (288)
T ss_dssp             --------CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTC---T------TTTSBGGG----G-----TTCSCC
T ss_pred             hhhhhccCCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCc---c------ccccchHH----h-----hccCcC
Confidence            44444433 5899999 899999999988754 3333334343210   0      11223331    0     0011 1


Q ss_pred             CceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccc
Q 008516           81 QMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGF  139 (563)
Q Consensus        81 ~v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~  139 (563)
                      ++.+       ..  .-++.+.++|+||+.+. +++-...-+.|.++++|+| .||+|+
T Consensus        75 gv~v-------~~--dl~~ll~~aDVvIDFT~-p~a~~~~~~~~l~~Gv~vV-iGTTG~  122 (288)
T 3ijp_A           75 GVRI-------TD--DPESAFSNTEGILDFSQ-PQASVLYANYAAQKSLIHI-IGTTGF  122 (288)
T ss_dssp             SCBC-------BS--CHHHHTTSCSEEEECSC-HHHHHHHHHHHHHHTCEEE-ECCCCC
T ss_pred             Ccee-------eC--CHHHHhcCCCEEEEcCC-HHHHHHHHHHHHHcCCCEE-EECCCC
Confidence            1111       11  12456778999999884 5555556678999999999 566675

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=90.55  E-value=0.87  Score=45.13  Aligned_cols=34  Identities=21%  Similarity=0.297  Sum_probs=27.6

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEe
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      .+++++++|.| .||||.++++.|+..|. ++.++|
T Consensus         6 ~l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~   40 (291)
T 1e7w_A            6 APTVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHY   40 (291)
T ss_dssp             --CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEc
Confidence            46777888887 78999999999999997 677776

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=90.52  E-value=0.24  Score=49.86  Aligned_cols=35  Identities=31%  Similarity=0.542  Sum_probs=29.9

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCC-CeEEEEeCC
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMD   45 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gv-g~I~iiD~D   45 (563)
                      ...||.|+|+|++|+.++..|+..|. ++++++|.+
T Consensus         6 ~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~   41 (319)
T 1lld_A            6 KPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA   41 (319)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            34689999999999999999999995 479998854

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=90.51  E-value=0.17  Score=50.29  Aligned_cols=74  Identities=23%  Similarity=0.292  Sum_probs=50.7

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      ++.++++|+|+||+|..++..|+..| .+++++|.+                   ..|++.+++.+....   .+.... 
T Consensus       117 ~~~~~vlvlGaGg~g~a~a~~L~~~G-~~v~v~~R~-------------------~~~a~~l~~~~~~~~---~~~~~~-  172 (272)
T 1p77_A          117 RPNQHVLILGAGGATKGVLLPLLQAQ-QNIVLANRT-------------------FSKTKELAERFQPYG---NIQAVS-  172 (272)
T ss_dssp             CTTCEEEEECCSHHHHTTHHHHHHTT-CEEEEEESS-------------------HHHHHHHHHHHGGGS---CEEEEE-
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEECC-------------------HHHHHHHHHHccccC---CeEEee-
Confidence            46789999999999999999999999 799998633                   246666666654321   222211 


Q ss_pred             CCCCCcchHhhc-ccccEEEEccCCH
Q 008516           90 NVKDPKFNVEFF-KQFNVVLNGLDNL  114 (563)
Q Consensus        90 ~i~~~~~~~~~~-~~~dvVi~alDn~  114 (563)
                       +      .+.- .++|+||+++...
T Consensus       173 -~------~~~~~~~~DivIn~t~~~  191 (272)
T 1p77_A          173 -M------DSIPLQTYDLVINATSAG  191 (272)
T ss_dssp             -G------GGCCCSCCSEEEECCCC-
T ss_pred             -H------HHhccCCCCEEEECCCCC
Confidence             1      0111 3899999998643

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=90.49  E-value=0.57  Score=46.18  Aligned_cols=34  Identities=26%  Similarity=0.418  Sum_probs=28.6

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +++++++|.| .||||.++++.|+..|. ++.++|.
T Consensus        27 l~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r   61 (276)
T 2b4q_A           27 LAGRIALVTGGSRGIGQMIAQGLLEAGA-RVFICAR   61 (276)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence            5677899998 58999999999999996 5777764

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=90.49  E-value=0.91  Score=44.65  Aligned_cols=33  Identities=21%  Similarity=0.408  Sum_probs=28.4

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEe
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      |++++++|.| .||||.++++.|+..|. ++.++|
T Consensus        29 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~   62 (273)
T 3uf0_A           29 LAGRTAVVTGAGSGIGRAIAHGYARAGA-HVLAWG   62 (273)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEc
Confidence            5677899998 68999999999999998 577776

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=90.41  E-value=0.89  Score=49.21  Aligned_cols=34  Identities=21%  Similarity=0.299  Sum_probs=29.6

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .+.+|.|||+|.+|+.++.+|+..|. ++++.|.+
T Consensus         9 ~~~~IgvIGlG~MG~~lA~~La~~G~-~V~v~dr~   42 (497)
T 2p4q_A            9 MSADFGLIGLAVMGQNLILNAADHGF-TVCAYNRT   42 (497)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCCCEEEEeeHHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            56789999999999999999999997 57887643

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=90.38  E-value=0.47  Score=46.81  Aligned_cols=35  Identities=14%  Similarity=0.410  Sum_probs=26.9

Q ss_pred             HHHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         8 ~kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ..|. ++++|.| .||||.++++.|+..|. ++.++|.
T Consensus        18 ~~~~-k~vlVTGas~gIG~aia~~La~~G~-~V~~~~r   53 (272)
T 2nwq_A           18 SHMS-STLFITGATSGFGEACARRFAEAGW-SLVLTGR   53 (272)
T ss_dssp             ---C-CEEEESSTTTSSHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCcC-cEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            4566 6788887 68999999999999996 5777764

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=90.37  E-value=0.25  Score=48.49  Aligned_cols=57  Identities=21%  Similarity=0.290  Sum_probs=37.3

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHhcCcccc--ceeeecccccccccccccCCCCCCCCcccCC
Q 008516          374 VHAVATTNAIIAGLIVIEAIKVLLKDTDKY--RMTYCLEHITKKMLLMPVEPYEPNKSCYVCS  434 (563)
Q Consensus       374 IPAIATTnAiVAGl~vlE~~K~l~~~~~~~--r~~f~~~~~~~~~~~~p~~~~~pn~~C~vC~  434 (563)
                      .+.++.++++++++++.|++|+|.|..+..  +..+++.....   +.... -+++|.|++|+
T Consensus       190 ~g~~~~~~~~~g~~~a~e~lk~l~g~~~~~~~~~~~~d~~~~~---~~~~~-~~~~~~C~~C~  248 (249)
T 1jw9_B          190 AGVMAPLIGVIGSLQAMEAIKMLAGYGKPASGKIVMYDAMTCQ---FREMK-LMRNPGCEVCG  248 (249)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHHHHTCSCCCBSEEEEEETTTTE---EEEEE-CCCCTTCTTTC
T ss_pred             cCCcchHHHHHHHHHHHHHHHHHhCCCCCccCeEEEEECCCCE---EEEEe-cCCCcCCCCcC
Confidence            356778999999999999999999865432  33333322111   11122 24789999997

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=90.36  E-value=0.62  Score=47.75  Aligned_cols=37  Identities=16%  Similarity=0.125  Sum_probs=26.7

Q ss_pred             HHcCCcEEEECCcHHHH-HHHHHHHHh-CCCeEEEEeCC
Q 008516            9 AIKGAKVLMVGAGGIGC-ELLKTLALS-GFQDIHIIDMD   45 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~-ellknLal~-Gvg~I~iiD~D   45 (563)
                      .++..||.|||+|.+|. ..+..|... |+.-+.+.|.+
T Consensus        24 ~m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~   62 (350)
T 3rc1_A           24 NANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRR   62 (350)
T ss_dssp             --CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESS
T ss_pred             CCCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCC
Confidence            34567899999999999 799999887 54333466643

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=90.29  E-value=1  Score=44.35  Aligned_cols=93  Identities=16%  Similarity=0.147  Sum_probs=56.1

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCC-eEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQ-DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg-~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      ...+|.|||+|.+|..+++.|+..|.+ +++++|.+.                   .+.+.+.    +..  ..... ..
T Consensus         5 ~~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~-------------------~~~~~~~----~~g--~~~~~-~~   58 (290)
T 3b1f_A            5 EEKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSD-------------------RSRDIAL----ERG--IVDEA-TA   58 (290)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSH-------------------HHHHHHH----HTT--SCSEE-ES
T ss_pred             ccceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCH-------------------HHHHHHH----HcC--Ccccc-cC
Confidence            346899999999999999999999753 577766321                   2222221    111  10001 11


Q ss_pred             CCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHh---cCCCEEEec
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA---ADVPLVESG  135 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~---~~~pli~~g  135 (563)
                      +      ..+.+++.|+|+.|+-....+..+.++...   .+..+++.+
T Consensus        59 ~------~~~~~~~aDvVilavp~~~~~~v~~~l~~~~l~~~~ivi~~~  101 (290)
T 3b1f_A           59 D------FKVFAALADVIILAVPIKKTIDFIKILADLDLKEDVIITDAG  101 (290)
T ss_dssp             C------TTTTGGGCSEEEECSCHHHHHHHHHHHHTSCCCTTCEEECCC
T ss_pred             C------HHHhhcCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCEEEECC
Confidence            1      123467899999999876666666665322   244555543

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=90.25  E-value=1.2  Score=44.17  Aligned_cols=36  Identities=19%  Similarity=0.251  Sum_probs=27.2

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .-..++|+|.| .|+||..+++.|+..|. +++++|.+
T Consensus         9 ~~~~~~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~r~   45 (321)
T 2pk3_A            9 HHGSMRALITGVAGFVGKYLANHLTEQNV-EVFGTSRN   45 (321)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             ccCcceEEEECCCChHHHHHHHHHHHCCC-EEEEEecC
Confidence            34567788887 69999999999999996 78887754

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=90.24  E-value=0.47  Score=45.99  Aligned_cols=37  Identities=24%  Similarity=0.416  Sum_probs=31.2

Q ss_pred             HHHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         8 ~kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ..|++++++|.| .||||.++++.|+..|. ++.++|.+
T Consensus         8 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~   45 (252)
T 3f1l_A            8 DLLNDRIILVTGASDGIGREAAMTYARYGA-TVILLGRN   45 (252)
T ss_dssp             TTTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            457888999998 58999999999999998 68887743

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=90.22  E-value=1.1  Score=47.91  Aligned_cols=96  Identities=17%  Similarity=0.229  Sum_probs=70.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i   91 (563)
                      .++|+|+|.|-+|..+++.|-. + .++.+|+.|                   +.|++.+++.+    |++.  ..+++.
T Consensus       235 ~~~v~I~GgG~ig~~lA~~L~~-~-~~v~iIE~d-------------------~~r~~~la~~l----~~~~--Vi~GD~  287 (461)
T 4g65_A          235 YRRIMIVGGGNIGASLAKRLEQ-T-YSVKLIERN-------------------LQRAEKLSEEL----ENTI--VFCGDA  287 (461)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTT-T-SEEEEEESC-------------------HHHHHHHHHHC----TTSE--EEESCT
T ss_pred             ccEEEEEcchHHHHHHHHHhhh-c-CceEEEecC-------------------HHHHHHHHHHC----CCce--EEeccc
Confidence            4689999999999999999854 3 478888644                   34666555543    4443  344555


Q ss_pred             CCC-cchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEe
Q 008516           92 KDP-KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVES  134 (563)
Q Consensus        92 ~~~-~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~  134 (563)
                      ++. ...++-+.++|+++.++++.+.-.....++++.|++-+-+
T Consensus       288 td~~~L~ee~i~~~D~~ia~T~~De~Ni~~~llAk~~gv~kvIa  331 (461)
T 4g65_A          288 ADQELLTEENIDQVDVFIALTNEDETNIMSAMLAKRMGAKKVMV  331 (461)
T ss_dssp             TCHHHHHHTTGGGCSEEEECCSCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             cchhhHhhcCchhhcEEEEcccCcHHHHHHHHHHHHcCCccccc
Confidence            432 3345567899999999999999988899999988875544

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=90.21  E-value=0.64  Score=45.37  Aligned_cols=34  Identities=15%  Similarity=0.235  Sum_probs=29.6

Q ss_pred             HcCCcEEEECCc---HHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVGAG---GIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvGaG---giG~ellknLal~Gvg~I~iiD~   44 (563)
                      |+++.++|-|++   |||-++++.|+..|. ++.++|.
T Consensus         4 l~gK~alVTGaa~~~GIG~aiA~~la~~Ga-~Vvi~~r   40 (256)
T 4fs3_A            4 LENKTYVIMGIANKRSIAFGVAKVLDQLGA-KLVFTYR   40 (256)
T ss_dssp             CTTCEEEEECCCSTTCHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEEC
Confidence            678899999974   899999999999997 6888774

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=90.21  E-value=0.91  Score=45.19  Aligned_cols=36  Identities=36%  Similarity=0.456  Sum_probs=30.3

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +|+++.++|.| .||||.++++.|+..|. ++.++|.+
T Consensus        25 ~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~   61 (299)
T 3t7c_A           25 KVEGKVAFITGAARGQGRSHAITLAREGA-DIIAIDVC   61 (299)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             ccCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEecc
Confidence            46778899998 58999999999999997 57777754

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=90.15  E-value=1.1  Score=50.00  Aligned_cols=37  Identities=30%  Similarity=0.403  Sum_probs=28.0

Q ss_pred             HHHHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            7 LEAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         7 q~kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ...+++++|+|.| .|+||..+++.|+..|. +++++|.
T Consensus         6 ~~~~~~~~ilVTGatG~IG~~l~~~L~~~G~-~V~~~~r   43 (699)
T 1z45_A            6 QSESTSKIVLVTGGAGYIGSHTVVELIENGY-DCVVADN   43 (699)
T ss_dssp             -----CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             ccccCCCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEEC
Confidence            3456788999998 59999999999999995 6777764

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=90.14  E-value=0.29  Score=44.45  Aligned_cols=33  Identities=27%  Similarity=0.401  Sum_probs=29.6

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~   46 (563)
                      .+|+|||+|.+|++++..|+..|. +++++|...
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~-~v~lie~~~   34 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGL-KVLVLDGGR   34 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            379999999999999999999997 799998754

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=90.13  E-value=0.31  Score=51.28  Aligned_cols=100  Identities=14%  Similarity=0.209  Sum_probs=57.6

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCC-------eEEEEeCCccCcccCccccCCCCCCC-CchHHHHHHHHHHh--hC---
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQ-------DIHIIDMDTIEVSNLNRQFLFRQSHV-GQSKAKVARDAVLK--FR---   79 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg-------~I~iiD~D~Ve~sNLnRqfLf~~~di-Gk~Ka~va~~~l~~--~n---   79 (563)
                      .||.|+|+|+.|+.+++.|+..|-+       .+++.-.               ++++ ++.-++    .+.+  .|   
T Consensus        35 ~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r---------------~~e~~~~~~~e----~in~~~~N~~Y   95 (391)
T 4fgw_A           35 FKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVF---------------EEEINGEKLTE----IINTRHQNVKY   95 (391)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECC---------------CCBSSSCBHHH----HHTTTCCBTTT
T ss_pred             CeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEc---------------chHhhhHHHHH----HHHhcCcCccc
Confidence            3899999999999999999998732       3555422               2221 221111    1211  11   


Q ss_pred             -CCceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHH--hcCCCEEEe
Q 008516           80 -PQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL--AADVPLVES  134 (563)
Q Consensus        80 -p~v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~--~~~~pli~~  134 (563)
                       |++++   +.++.-...-.+.+++.|+||.++-+...|..+.++.-  ..+.++|.+
T Consensus        96 Lpgv~L---p~~i~~t~dl~~al~~ad~ii~avPs~~~r~~l~~l~~~~~~~~~iv~~  150 (391)
T 4fgw_A           96 LPGITL---PDNLVANPDLIDSVKDVDIIVFNIPHQFLPRICSQLKGHVDSHVRAISC  150 (391)
T ss_dssp             BTTCCC---CSSEEEESCHHHHHTTCSEEEECSCGGGHHHHHHHHTTTSCTTCEEEEC
T ss_pred             CCCCcC---CCCcEEeCCHHHHHhcCCEEEEECChhhhHHHHHHhccccCCCceeEEe
Confidence             33322   11111001124567899999999998888888777632  234455544

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=90.12  E-value=0.92  Score=45.64  Aligned_cols=92  Identities=24%  Similarity=0.294  Sum_probs=54.0

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      +|.+++++|.| .||||.++++.|+..|. ++.++|.+.-. .++..    .  .-...+.+.+.+.+....  .++..+
T Consensus        43 ~l~gk~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~-~~~~~----~--~~~~~~~~~~~~~~~~~~--~~~~~~  112 (317)
T 3oec_A           43 RLQGKVAFITGAARGQGRTHAVRLAQDGA-DIVAIDLCRQQ-PNLDY----A--QGSPEELKETVRLVEEQG--RRIIAR  112 (317)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECCCCC-TTCCS----C--CCCHHHHHHHHHHHHHTT--CCEEEE
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCC-eEEEEeccccc-ccccc----c--ccCHHHHHHHHHHHHhcC--CeEEEE
Confidence            46677888887 68999999999999997 67787754311 11110    0  001233344444454443  456667


Q ss_pred             ccCCCCCcchHhh-------cccccEEEEc
Q 008516           88 HANVKDPKFNVEF-------FKQFNVVLNG  110 (563)
Q Consensus        88 ~~~i~~~~~~~~~-------~~~~dvVi~a  110 (563)
                      ..++++...-..+       +.+.|+||++
T Consensus       113 ~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnn  142 (317)
T 3oec_A          113 QADVRDLASLQAVVDEALAEFGHIDILVSN  142 (317)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             ECCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            7777543222222       2367888874

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=90.12  E-value=0.26  Score=49.33  Aligned_cols=35  Identities=26%  Similarity=0.479  Sum_probs=31.5

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .|.+++|+|+|+|++|..+++.|...|. +++++|.
T Consensus       152 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~dr  186 (293)
T 3d4o_A          152 TIHGANVAVLGLGRVGMSVARKFAALGA-KVKVGAR  186 (293)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEEC
Confidence            3678999999999999999999999998 8888874

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=90.07  E-value=0.58  Score=46.71  Aligned_cols=34  Identities=26%  Similarity=0.462  Sum_probs=28.3

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +.+++++|.| .||||.++++.|+..|. ++.++|.
T Consensus        24 l~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r   58 (297)
T 1xhl_A           24 FSGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGR   58 (297)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            5567788887 68999999999999997 5777764

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=90.06  E-value=0.26  Score=49.85  Aligned_cols=33  Identities=24%  Similarity=0.448  Sum_probs=28.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ..||+|+|+|++|+.++..|+..|. .++++|.+
T Consensus         2 ~mkI~IiGaGaiG~~~a~~L~~~g~-~V~~~~r~   34 (320)
T 3i83_A            2 SLNILVIGTGAIGSFYGALLAKTGH-CVSVVSRS   34 (320)
T ss_dssp             -CEEEEESCCHHHHHHHHHHHHTTC-EEEEECST
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence            4689999999999999999999995 78888754

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=90.01  E-value=1.3  Score=48.34  Aligned_cols=86  Identities=13%  Similarity=0.163  Sum_probs=63.5

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK   92 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~   92 (563)
                      .+++|+|+|.+|..+++.|...|. .++++|.|.-....+.                               ..+.++.+
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~-------------------------------~~i~gD~t  396 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPV-PFILIDRQESPVCNDH-------------------------------VVVYGDAT  396 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCCSSCCSS-------------------------------CEEESCSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-CEEEEECChHHHhhcC-------------------------------CEEEeCCC
Confidence            789999999999999999999997 5899997754322210                               23344443


Q ss_pred             CC-cchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCC
Q 008516           93 DP-KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVP  130 (563)
Q Consensus        93 ~~-~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~p  130 (563)
                      +. .....-++++|.||.++++.+.-..+...+++.+.+
T Consensus       397 ~~~~L~~agi~~ad~vi~~~~~d~~ni~~~~~ak~l~~~  435 (565)
T 4gx0_A          397 VGQTLRQAGIDRASGIIVTTNDDSTNIFLTLACRHLHSH  435 (565)
T ss_dssp             SSTHHHHHTTTSCSEEEECCSCHHHHHHHHHHHHHHCSS
T ss_pred             CHHHHHhcCccccCEEEEECCCchHHHHHHHHHHHHCCC
Confidence            22 233445789999999999988888888888887754

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=89.94  E-value=1.4  Score=44.46  Aligned_cols=31  Identities=26%  Similarity=0.376  Sum_probs=25.9

Q ss_pred             cEEEECC-cHHHHHHHHHHHHh-CCCeEEEEeCC
Q 008516           14 KVLMVGA-GGIGCELLKTLALS-GFQDIHIIDMD   45 (563)
Q Consensus        14 ~VlvvGa-GgiG~ellknLal~-Gvg~I~iiD~D   45 (563)
                      ||+|.|+ |+||..+++.|+.. |. +++++|..
T Consensus         2 kvlVTGasG~iG~~l~~~L~~~~g~-~V~~~~r~   34 (361)
T 1kew_A            2 KILITGGAGFIGSAVVRHIIKNTQD-TVVNIDKL   34 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSC-EEEEEECC
T ss_pred             EEEEECCCchHhHHHHHHHHhcCCC-eEEEEecC
Confidence            6999995 99999999999997 54 67777753

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=89.92  E-value=0.17  Score=51.16  Aligned_cols=61  Identities=23%  Similarity=0.362  Sum_probs=39.3

Q ss_pred             cccccchhhHHHHHHHHHHHHHHHHHhcCccccceeeecccccccccccccCCCCCCCCcc--cCCC
Q 008516          371 GNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRMTYCLEHITKKMLLMPVEPYEPNKSCY--VCSE  435 (563)
Q Consensus       371 GnIIPAIATTnAiVAGl~vlE~~K~l~~~~~~~r~~f~~~~~~~~~~~~p~~~~~pn~~C~--vC~~  435 (563)
                      |..-+++++|.++|++++++|++|+|.|..+.-|...++.. ..  -+ ..-.-.|+|.|.  +|+.
T Consensus       211 gvc~~~l~~~~g~vgslqA~EalK~L~g~g~~~~ll~~D~~-~~--~~-~~~~~~~~p~C~~~~Cg~  273 (292)
T 3h8v_A          211 GVCAASLPTTMGVVAGILVQNVLKFLLNFGTVSFYLGYNAM-QD--FF-PTMSMKPNPQCDDRNCRK  273 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCCSEEEEETT-TT--BC-CEECCCCCTTCSCHHHHH
T ss_pred             CcccCCcchHHHHHHHHHHHHHHHHHhCCCCCCeEEEEECC-CC--cE-EEEecCCCcCcCccccCC
Confidence            43335689999999999999999999986543332222211 10  11 112235799998  9984

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=89.92  E-value=0.23  Score=49.64  Aligned_cols=33  Identities=21%  Similarity=0.314  Sum_probs=29.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ..||+|+|+|++|+.++..|+..|. +++++|.+
T Consensus         2 ~mkI~iiGaGa~G~~~a~~L~~~g~-~V~~~~r~   34 (294)
T 3g17_A            2 SLSVAIIGPGAVGTTIAYELQQSLP-HTTLIGRH   34 (294)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHHCT-TCEEEESS
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCC-eEEEEEec
Confidence            4689999999999999999999995 78898865

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=89.90  E-value=0.56  Score=44.87  Aligned_cols=36  Identities=19%  Similarity=0.383  Sum_probs=29.7

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .+.+++++|.| .||||.++++.|+..|. ++.++|.+
T Consensus         3 ~~~~k~vlVtGasggiG~~~a~~l~~~G~-~V~~~~r~   39 (251)
T 1zk4_A            3 RLDGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRH   39 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCcEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            36678899998 68999999999999996 57777643

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=89.82  E-value=1.7  Score=43.43  Aligned_cols=30  Identities=37%  Similarity=0.579  Sum_probs=25.5

Q ss_pred             cEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           14 KVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        14 ~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +|+|.| .|+||..+++.|+..|. +++++|.
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~~   32 (338)
T 1udb_A            2 RVLVTGGSGYIGSHTCVQLLQNGH-DVIILDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCC-EEEEEec
Confidence            789998 59999999999999996 5777663

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=89.81  E-value=1  Score=45.31  Aligned_cols=72  Identities=18%  Similarity=0.242  Sum_probs=47.9

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCC-eEEEEeC--CccCcccCccccCCCCCCCCchHHHHHHHHHHh---hCCCceEE
Q 008516           13 AKVLMVG-AGGIGCELLKTLALSGFQ-DIHIIDM--DTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLK---FRPQMSIT   85 (563)
Q Consensus        13 ~~VlvvG-aGgiG~ellknLal~Gvg-~I~iiD~--D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~---~np~v~I~   85 (563)
                      .||+|+| +|.+|..++..|+..|.. ++.++|.  +.                   .|++..+.-+.+   ....+++.
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~-------------------~~~~~~~~dl~~~~~~~~~~~v~   61 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKE-------------------DDTVGQAADTNHGIAYDSNTRVR   61 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGH-------------------HHHHHHHHHHHHHHTTTCCCEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCCh-------------------hhHHHHHHHHHHHHhhCCCcEEE
Confidence            4899999 999999999999988864 5888874  21                   122222223332   34566666


Q ss_pred             EeccCCCCCcchHhhcccccEEEEccC
Q 008516           86 AHHANVKDPKFNVEFFKQFNVVLNGLD  112 (563)
Q Consensus        86 ~~~~~i~~~~~~~~~~~~~dvVi~alD  112 (563)
                      .  +.       .+.++++|+||.+..
T Consensus        62 ~--~~-------~~a~~~aDvVi~~ag   79 (303)
T 1o6z_A           62 Q--GG-------YEDTAGSDVVVITAG   79 (303)
T ss_dssp             E--CC-------GGGGTTCSEEEECCC
T ss_pred             e--CC-------HHHhCCCCEEEEcCC
Confidence            5  11       244889999998754

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=89.81  E-value=0.6  Score=45.78  Aligned_cols=35  Identities=31%  Similarity=0.659  Sum_probs=29.7

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .+.+++++|.| .||||.++++.|+..|. ++.++|.
T Consensus        27 ~l~~k~vlVTGas~GIG~aia~~l~~~G~-~Vi~~~r   62 (281)
T 3ppi_A           27 QFEGASAIVSGGAGGLGEATVRRLHADGL-GVVIADL   62 (281)
T ss_dssp             GGTTEEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence            46778899998 58999999999999997 5777764

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=89.79  E-value=0.61  Score=45.64  Aligned_cols=34  Identities=24%  Similarity=0.383  Sum_probs=28.1

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEe
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      +|++++++|.| .||||.++++.|+..|. ++.++|
T Consensus        15 ~l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~   49 (270)
T 3is3_A           15 RLDGKVALVTGSGRGIGAAVAVHLGRLGA-KVVVNY   49 (270)
T ss_dssp             CCTTCEEEESCTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CcCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEc
Confidence            46778888888 57999999999999997 566655

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=89.75  E-value=1  Score=45.57  Aligned_cols=32  Identities=34%  Similarity=0.530  Sum_probs=27.8

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCC-CeEEEEeC
Q 008516           13 AKVLMVGA-GGIGCELLKTLALSGF-QDIHIIDM   44 (563)
Q Consensus        13 ~~VlvvGa-GgiG~ellknLal~Gv-g~I~iiD~   44 (563)
                      .||+|+|+ |.+|..++..|+..|. .++.++|.
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di   34 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGR   34 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEEC
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcC
Confidence            38999999 9999999999998886 45888884

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=89.74  E-value=0.62  Score=48.24  Aligned_cols=93  Identities=17%  Similarity=0.225  Sum_probs=60.3

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (563)
Q Consensus        13 ~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i   91 (563)
                      .||.||| .|.+|.|+++.|.....-+|..+               ...+..|++=.        +..|...   ..-.+
T Consensus        14 ~~V~IvGAtG~vG~ellrlL~~hP~~el~~l---------------~S~~~aG~~~~--------~~~p~~~---~~l~~   67 (351)
T 1vkn_A           14 IRAGIIGATGYTGLELVRLLKNHPEAKITYL---------------SSRTYAGKKLE--------EIFPSTL---ENSIL   67 (351)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHCTTEEEEEE---------------ECSTTTTSBHH--------HHCGGGC---CCCBC
T ss_pred             eEEEEECCCCHHHHHHHHHHHcCCCcEEEEE---------------eCcccccCChH--------HhChhhc---cCceE
Confidence            4799998 58999999999998765555553               23455676433        3334433   11111


Q ss_pred             CCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEec
Q 008516           92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG  135 (563)
Q Consensus        92 ~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~g  135 (563)
                      .+ ....+++++.|+|+.|+.+-.++.+..+.   .+..+||.+
T Consensus        68 ~~-~~~~~~~~~~Dvvf~alp~~~s~~~~~~~---~g~~VIDlS  107 (351)
T 1vkn_A           68 SE-FDPEKVSKNCDVLFTALPAGASYDLVREL---KGVKIIDLG  107 (351)
T ss_dssp             BC-CCHHHHHHHCSEEEECCSTTHHHHHHTTC---CSCEEEESS
T ss_pred             Ee-CCHHHhhcCCCEEEECCCcHHHHHHHHHh---CCCEEEECC
Confidence            11 11244568899999999988888877665   566667654

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=89.70  E-value=0.67  Score=44.79  Aligned_cols=34  Identities=26%  Similarity=0.392  Sum_probs=28.3

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +++++++|.| .||||.++++.|+..|. ++.++|.
T Consensus         7 l~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r   41 (248)
T 3op4_A            7 LEGKVALVTGASRGIGKAIAELLAERGA-KVIGTAT   41 (248)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            5677888888 68999999999999997 5777764

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=89.66  E-value=0.29  Score=49.10  Aligned_cols=36  Identities=25%  Similarity=0.475  Sum_probs=31.8

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .|.+++|+|+|+|++|..+++.|...|. +++++|.+
T Consensus       154 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~d~~  189 (300)
T 2rir_A          154 TIHGSQVAVLGLGRTGMTIARTFAALGA-NVKVGARS  189 (300)
T ss_dssp             CSTTSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCCEEEEEcccHHHHHHHHHHHHCCC-EEEEEECC
Confidence            3678899999999999999999999997 78888743

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=89.66  E-value=0.93  Score=45.93  Aligned_cols=84  Identities=13%  Similarity=0.163  Sum_probs=52.1

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      +.+++++|.| .||||.++++.|+..|. ++.+++.+..              +....+.+.+++.+....  .++..+.
T Consensus         3 m~~k~vlVTGas~GIG~aia~~L~~~G~-~V~~~~r~~~--------------~r~~~~~~~l~~~~~~~~--~~~~~~~   65 (324)
T 3u9l_A            3 MSKKIILITGASSGFGRLTAEALAGAGH-RVYASMRDIV--------------GRNASNVEAIAGFARDND--VDLRTLE   65 (324)
T ss_dssp             --CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCTT--------------TTTHHHHHHHHHHHHHHT--CCEEEEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEecCccc--------------ccCHHHHHHHHHHHHhcC--CcEEEEE
Confidence            4567788888 59999999999999997 4666554322              122345555666665554  3566666


Q ss_pred             cCCCCCcchHhhc-------ccccEEEEc
Q 008516           89 ANVKDPKFNVEFF-------KQFNVVLNG  110 (563)
Q Consensus        89 ~~i~~~~~~~~~~-------~~~dvVi~a  110 (563)
                      .++++...-.+++       .+.|+||++
T Consensus        66 ~Dvtd~~~v~~~~~~~~~~~g~iD~lVnn   94 (324)
T 3u9l_A           66 LDVQSQVSVDRAIDQIIGEDGRIDVLIHN   94 (324)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCSEEEEC
T ss_pred             eecCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            6775432222333       367888875

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=89.66  E-value=0.65  Score=45.04  Aligned_cols=34  Identities=32%  Similarity=0.558  Sum_probs=27.5

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      |++++++|.| .||||.++++.|+..|. ++.++|.
T Consensus         2 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r   36 (260)
T 1x1t_A            2 LKGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGF   36 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCC-EEEEEeC
Confidence            3567788887 68999999999999997 5777653

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=89.64  E-value=0.51  Score=46.14  Aligned_cols=34  Identities=32%  Similarity=0.524  Sum_probs=28.7

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +++++++|.| .||||.++++.|+..|. ++.++|.
T Consensus        32 l~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r   66 (279)
T 3ctm_A           32 LKGKVASVTGSSGGIGWAVAEAYAQAGA-DVAIWYN   66 (279)
T ss_dssp             CTTCEEEETTTTSSHHHHHHHHHHHHTC-EEEEEES
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            5677888887 68999999999999996 5777764

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=89.63  E-value=0.54  Score=45.12  Aligned_cols=35  Identities=26%  Similarity=0.457  Sum_probs=29.8

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .+++++|+|.| .||||.++++.|+..|. ++.++|.
T Consensus        11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r   46 (249)
T 3f9i_A           11 DLTGKTSLITGASSGIGSAIARLLHKLGS-KVIISGS   46 (249)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcC
Confidence            46788899998 68999999999999996 5778764

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=89.60  E-value=0.38  Score=51.55  Aligned_cols=94  Identities=14%  Similarity=0.183  Sum_probs=59.2

Q ss_pred             cCCcEEEECCcHH--HHHHHHHHHHhC--CCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEE
Q 008516           11 KGAKVLMVGAGGI--GCELLKTLALSG--FQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITA   86 (563)
Q Consensus        11 ~~~~VlvvGaGgi--G~ellknLal~G--vg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~   86 (563)
                      ++.||.|+|+|++  |..++..|+...  .|+|+++|.|.   .-+.+             ....++.+.+  ...+|++
T Consensus         4 ~~~KIaVIGaGs~g~g~~la~~l~~~~~~~geV~L~Di~~---e~le~-------------~~~~~~~l~~--~~~~I~~   65 (450)
T 3fef_A            4 DQIKIAYIGGGSQGWARSLMSDLSIDERMSGTVALYDLDF---EAAQK-------------NEVIGNHSGN--GRWRYEA   65 (450)
T ss_dssp             CCEEEEEETTTCSSHHHHHHHHHHHCSSCCEEEEEECSSH---HHHHH-------------HHHHHTTSTT--SCEEEEE
T ss_pred             CCCEEEEECCChhHhHHHHHHHHHhccccCCeEEEEeCCH---HHHHH-------------HHHHHHHHhc--cCCeEEE
Confidence            5679999999996  789999998732  24899988543   11111             1111111111  3345544


Q ss_pred             eccCCCCCcchHhhcccccEEEEcc--CCHHHHHHHHHHHHhcCC
Q 008516           87 HHANVKDPKFNVEFFKQFNVVLNGL--DNLDARRHVNRLCLAADV  129 (563)
Q Consensus        87 ~~~~i~~~~~~~~~~~~~dvVi~al--Dn~~ar~~in~~c~~~~~  129 (563)
                      ..+       -.+-++++|+||.+.  ...++|..=-++.+++|+
T Consensus        66 TtD-------~~eAl~dADfVI~airvG~~~~~~~De~ip~k~G~  103 (450)
T 3fef_A           66 VST-------LKKALSAADIVIISILPGSLDDMEVDVHLPERCGI  103 (450)
T ss_dssp             ESS-------HHHHHTTCSEEEECCCSSCHHHHHHHHHGGGGGTC
T ss_pred             ECC-------HHHHhcCCCEEEeccccCCcccchhhhhhhhccCc
Confidence            221       235689999999987  667888766666777776

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=89.55  E-value=0.66  Score=45.15  Aligned_cols=33  Identities=15%  Similarity=0.298  Sum_probs=28.0

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEE
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHII   42 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~ii   42 (563)
                      +|++++++|.| .||||.++++.|+..|. ++.++
T Consensus         5 ~l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~   38 (259)
T 3edm_A            5 RFTNRTIVVAGAGRDIGRACAIRFAQEGA-NVVLT   38 (259)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEE
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEE
Confidence            46788999998 57999999999999997 46665

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=89.53  E-value=0.31  Score=49.83  Aligned_cols=33  Identities=27%  Similarity=0.359  Sum_probs=30.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +.||+|||+|..|..+|-.|++.|+ +++|+|.+
T Consensus         1 sm~V~IVGaGpaGl~~A~~L~~~G~-~v~v~Er~   33 (412)
T 4hb9_A            1 SMHVGIIGAGIGGTCLAHGLRKHGI-KVTIYERN   33 (412)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC-CEEEEecC
Confidence            4799999999999999999999999 68998854

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=89.53  E-value=1  Score=43.39  Aligned_cols=31  Identities=23%  Similarity=0.459  Sum_probs=25.8

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        13 ~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ++|+|.| .|++|..+++.|+ .| .+++++|.+
T Consensus         1 m~ilVtGatG~iG~~l~~~L~-~g-~~V~~~~r~   32 (273)
T 2ggs_A            1 MRTLITGASGQLGIELSRLLS-ER-HEVIKVYNS   32 (273)
T ss_dssp             CCEEEETTTSHHHHHHHHHHT-TT-SCEEEEESS
T ss_pred             CEEEEECCCChhHHHHHHHHh-cC-CeEEEecCC
Confidence            3799999 5999999999999 48 578888754

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=89.51  E-value=1.5  Score=47.06  Aligned_cols=31  Identities=19%  Similarity=0.405  Sum_probs=27.7

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ++|.|||+|.+|..++.+|+..|. +++++|.
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~-~V~v~dr   33 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGF-VVCAFNR   33 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC-CEEEECS
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCC-eEEEEeC
Confidence            589999999999999999999997 5788763

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=89.48  E-value=0.57  Score=45.77  Aligned_cols=37  Identities=16%  Similarity=0.350  Sum_probs=31.1

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDT   46 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~   46 (563)
                      .|++++++|.| .||||.++++.|+..|. ++.++|.+.
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~   42 (264)
T 2dtx_A            5 DLRDKVVIVTGASMGIGRAIAERFVDEGS-KVIDLSIHD   42 (264)
T ss_dssp             GGTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEecCc
Confidence            46778899998 68999999999999997 688887653

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=89.48  E-value=0.3  Score=49.80  Aligned_cols=31  Identities=35%  Similarity=0.551  Sum_probs=28.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEe
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      ..||.|||+|++|+.++..|+..|. .++++|
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~-~V~~~~   33 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGE-AINVLA   33 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTC-CEEEEC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCC-EEEEEE
Confidence            5799999999999999999999996 688876

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=89.45  E-value=0.42  Score=49.45  Aligned_cols=90  Identities=11%  Similarity=0.163  Sum_probs=52.9

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCC------CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHH--hhCCCce-
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGF------QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVL--KFRPQMS-   83 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gv------g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~--~~np~v~-   83 (563)
                      .||.|||+|.+|+.++..|+..|.      .+++++|.+.-              .-++.+++.+.+.-.  ..-|+.. 
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~--------------~~~~~~~~~l~~~~~~~~~~~~~~~   87 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF--------------VNGERMVDIINNKHENTKYLKGVPL   87 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC-----------------CCHHHHHHHHCBCTTTSTTCBC
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh--------------hhhHHHHHHHHhcCcccccCCcccC
Confidence            489999999999999999999992      36888875421              012334544433210  0112211 


Q ss_pred             ---EEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHH
Q 008516           84 ---ITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL  123 (563)
Q Consensus        84 ---I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~  123 (563)
                         +.+..       ...+..+++|+||.++-....+..+.++
T Consensus        88 ~~~i~~~~-------~~~ea~~~aDvVilav~~~~~~~vl~~i  123 (375)
T 1yj8_A           88 PHNIVAHS-------DLASVINDADLLIFIVPCQYLESVLASI  123 (375)
T ss_dssp             CTTEEEES-------STHHHHTTCSEEEECCCHHHHHHHHHHH
T ss_pred             cCCeEEEC-------CHHHHHcCCCEEEEcCCHHHHHHHHHHH
Confidence               11111       1134567899999999765455544443

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=89.42  E-value=0.54  Score=45.54  Aligned_cols=35  Identities=23%  Similarity=0.502  Sum_probs=29.4

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +++++++|.| .||||.++++.|+..|. ++.++|.+
T Consensus         5 l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~   40 (257)
T 3tpc_A            5 LKSRVFIVTGASSGLGAAVTRMLAQEGA-TVLGLDLK   40 (257)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5678889998 58999999999999997 57777744

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=89.42  E-value=0.25  Score=49.84  Aligned_cols=33  Identities=30%  Similarity=0.435  Sum_probs=27.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ..||+|+|+|++|+.++..|+..|. .++++|.+
T Consensus         2 ~mkI~IiGaGaiG~~~a~~L~~~g~-~V~~~~r~   34 (312)
T 3hn2_A            2 SLRIAIVGAGALGLYYGALLQRSGE-DVHFLLRR   34 (312)
T ss_dssp             --CEEEECCSTTHHHHHHHHHHTSC-CEEEECST
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCC-eEEEEEcC
Confidence            3689999999999999999999996 68887643

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=89.40  E-value=1.2  Score=48.05  Aligned_cols=93  Identities=15%  Similarity=0.218  Sum_probs=60.7

Q ss_pred             CCcEEEECCcHH-HHHHHHHHHHh--CC--CeEEEEeCCccCcccCccccCCCCCCCCchHHHHH----HHHHHhhCCCc
Q 008516           12 GAKVLMVGAGGI-GCELLKTLALS--GF--QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVA----RDAVLKFRPQM   82 (563)
Q Consensus        12 ~~~VlvvGaGgi-G~ellknLal~--Gv--g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va----~~~l~~~np~v   82 (563)
                      +.||.|||+|++ |..++..|+..  ++  .+|.++|.|.                   .|++.+    ...+.......
T Consensus        28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~-------------------e~~~~~~~~~~~~l~~~~~~~   88 (472)
T 1u8x_X           28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDK-------------------ERQDRIAGACDVFIREKAPDI   88 (472)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCH-------------------HHHHHHHHHHHHHHHHHCTTS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCH-------------------HHHHHHHHHHHHHhccCCCCC
Confidence            459999999998 77788888887  66  4699988433                   222222    22223445556


Q ss_pred             eEEEeccCCCCCcchHhhcccccEEEEccCC--HHHHHHHHHHHHhcCCC
Q 008516           83 SITAHHANVKDPKFNVEFFKQFNVVLNGLDN--LDARRHVNRLCLAADVP  130 (563)
Q Consensus        83 ~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn--~~ar~~in~~c~~~~~p  130 (563)
                      +|.+..+       -.+-++++|+||.+...  .+.|..-..+..++++-
T Consensus        89 ~I~~t~D-------~~eal~~AD~VViaag~~~~~g~~rd~~ip~k~g~~  131 (472)
T 1u8x_X           89 EFAATTD-------PEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVV  131 (472)
T ss_dssp             EEEEESC-------HHHHHSSCSEEEECCCTTHHHHHHHHHHHHHTTTCC
T ss_pred             EEEEECC-------HHHHHcCCCEEEEcCCCccccccchhhhhhhhcCcc
Confidence            7766421       12457899999998765  33455556667788774

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=89.38  E-value=0.82  Score=44.81  Aligned_cols=36  Identities=17%  Similarity=0.356  Sum_probs=29.4

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .+++++++|.| .||||.++++.|+..|. ++.++|.+
T Consensus        13 ~~~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~   49 (266)
T 3p19_A           13 GSMKKLVVITGASSGIGEAIARRFSEEGH-PLLLLARR   49 (266)
T ss_dssp             --CCCEEEEESTTSHHHHHHHHHHHHTTC-CEEEEESC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            46778899998 58999999999999997 57887765

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=89.36  E-value=0.21  Score=49.96  Aligned_cols=32  Identities=28%  Similarity=0.466  Sum_probs=29.4

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEe
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      +.+++++|+|+||+|..+++.|+..|  +++++|
T Consensus       126 l~~k~vlV~GaGgiG~aia~~L~~~G--~V~v~~  157 (287)
T 1nvt_A          126 VKDKNIVIYGAGGAARAVAFELAKDN--NIIIAN  157 (287)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHTSSS--EEEEEC
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHCC--CEEEEE
Confidence            56789999999999999999999999  898876

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=89.29  E-value=0.52  Score=45.58  Aligned_cols=35  Identities=31%  Similarity=0.565  Sum_probs=29.2

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +|++++++|.| .||||.++++.|+..|. ++.++|.
T Consensus         3 ~l~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r   38 (253)
T 1hxh_A            3 RLQGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDI   38 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            46778899988 58999999999999997 5777663

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=89.25  E-value=0.51  Score=45.48  Aligned_cols=34  Identities=21%  Similarity=0.466  Sum_probs=28.8

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +++++|+|.| .||||.++++.|+..|. ++.++|.
T Consensus        12 ~~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r   46 (265)
T 1h5q_A           12 FVNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYR   46 (265)
T ss_dssp             CTTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEES
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeC
Confidence            5567899998 68999999999999996 6888774

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=89.24  E-value=0.34  Score=47.57  Aligned_cols=94  Identities=16%  Similarity=0.224  Sum_probs=56.2

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK   92 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~   92 (563)
                      .||.|+|+|.+|+.++..|+..|. +++++|.+.-....+..+.     .-|.               .......   ..
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~~~~~~~l~~~~-----~~~~---------------~~~~~~~---~~   56 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQGH-EVQGWLRVPQPYCSVNLVE-----TDGS---------------IFNESLT---AN   56 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSEEEEEEEC-----TTSC---------------EEEEEEE---ES
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCC-CEEEEEcCccceeeEEEEc-----CCCc---------------eeeeeee---ec
Confidence            379999999999999999999997 7999886542111111110     0010               0011111   01


Q ss_pred             CCcchHhhcccccEEEEccCCHHHHHHHHHHHHh--cCCCEEEe
Q 008516           93 DPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA--ADVPLVES  134 (563)
Q Consensus        93 ~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~--~~~pli~~  134 (563)
                          +.+..+++|+||.++-....+..+.++...  .+..+++.
T Consensus        57 ----~~~~~~~~d~vi~~v~~~~~~~v~~~l~~~l~~~~~vv~~   96 (291)
T 1ks9_A           57 ----DPDFLATSDLLLVTLKAWQVSDAVKSLASTLPVTTPILLI   96 (291)
T ss_dssp             ----CHHHHHTCSEEEECSCGGGHHHHHHHHHTTSCTTSCEEEE
T ss_pred             ----CccccCCCCEEEEEecHHhHHHHHHHHHhhCCCCCEEEEe
Confidence                124567899999999877766666554322  24456654

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=89.20  E-value=0.57  Score=45.39  Aligned_cols=33  Identities=15%  Similarity=0.312  Sum_probs=26.5

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEe
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      +..++++|.| .||||.++++.|+..|. ++.+++
T Consensus         5 ~~~k~vlVTGas~gIG~~~a~~l~~~G~-~v~~~~   38 (264)
T 3i4f_A            5 RFVRHALITAGTKGLGKQVTEKLLAKGY-SVTVTY   38 (264)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             cccCEEEEeCCCchhHHHHHHHHHHCCC-EEEEEc
Confidence            3456788888 58999999999999997 566665

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=89.19  E-value=0.91  Score=44.01  Aligned_cols=34  Identities=15%  Similarity=0.374  Sum_probs=28.0

Q ss_pred             HcCCcEEEECCc---HHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVGAG---GIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvGaG---giG~ellknLal~Gvg~I~iiD~   44 (563)
                      +++++++|.|++   |||.++++.|+..|. ++.++|.
T Consensus         5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r   41 (266)
T 3oig_A            5 LEGRNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYA   41 (266)
T ss_dssp             CTTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEES
T ss_pred             cCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecC
Confidence            567889999974   399999999999998 5777663

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=89.19  E-value=1.2  Score=45.02  Aligned_cols=33  Identities=18%  Similarity=0.281  Sum_probs=27.5

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEe
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      +.+++++|.| .||||.++++.|+..|. ++.++|
T Consensus        44 l~~k~~lVTGas~GIG~aia~~La~~G~-~Vv~~~   77 (328)
T 2qhx_A           44 PTVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHY   77 (328)
T ss_dssp             -CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEc
Confidence            6677888887 68999999999999996 577776

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=89.14  E-value=0.68  Score=45.06  Aligned_cols=61  Identities=23%  Similarity=0.312  Sum_probs=39.7

Q ss_pred             cCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEE-eCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516           11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHII-DMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        11 ~~~~VlvvG-aGgiG~ellknLal~Gvg~I~ii-D~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      ++++++|.| .||||.++++.|+..|.. +.++ +.+                   ..+.+.+++.+++..  .++..+.
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~~-vv~~~~r~-------------------~~~~~~~~~~~~~~~--~~~~~~~   60 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGYN-IVINYARS-------------------KKAALETAEEIEKLG--VKVLVVK   60 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESSC-------------------HHHHHHHHHHHHTTT--CCEEEEE
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCE-EEEEcCCC-------------------HHHHHHHHHHHHhcC--CcEEEEE
Confidence            456788887 689999999999999974 5554 211                   234555555555543  3455666


Q ss_pred             cCCCC
Q 008516           89 ANVKD   93 (563)
Q Consensus        89 ~~i~~   93 (563)
                      .++++
T Consensus        61 ~Dv~~   65 (258)
T 3oid_A           61 ANVGQ   65 (258)
T ss_dssp             CCTTC
T ss_pred             cCCCC
Confidence            66654

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=89.12  E-value=1.3  Score=43.26  Aligned_cols=33  Identities=27%  Similarity=0.440  Sum_probs=25.4

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEe
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      +.+++++|.| .||||.++++.|+..|. ++.+++
T Consensus        25 ~~~k~~lVTGas~GIG~aia~~la~~G~-~Vv~~~   58 (267)
T 3u5t_A           25 ETNKVAIVTGASRGIGAAIAARLASDGF-TVVINY   58 (267)
T ss_dssp             --CCEEEEESCSSHHHHHHHHHHHHHTC-EEEEEE
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEc
Confidence            4567788887 58999999999999997 455543

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=89.09  E-value=1.2  Score=47.96  Aligned_cols=31  Identities=29%  Similarity=0.514  Sum_probs=27.5

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ++|.|||+|.+|+.++.+|+..|. +++++|.
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~-~V~v~dr   32 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGF-KVAVFNR   32 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC-CEEEECS
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCC-EEEEEeC
Confidence            479999999999999999999997 5788764

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=89.08  E-value=0.57  Score=44.44  Aligned_cols=34  Identities=26%  Similarity=0.496  Sum_probs=27.9

Q ss_pred             cCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        11 ~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ++++|+|.| .||||.++++.|+..|. ++.++|.+
T Consensus         4 ~~k~vlVtGasggiG~~~a~~l~~~G~-~V~~~~r~   38 (234)
T 2ehd_A            4 MKGAVLITGASRGIGEATARLLHAKGY-RVGLMARD   38 (234)
T ss_dssp             CCCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            456788887 78999999999999997 67777643

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=89.07  E-value=1.3  Score=44.14  Aligned_cols=99  Identities=18%  Similarity=0.266  Sum_probs=57.3

Q ss_pred             CCcEEEECC-cHHHHHHHHHHHHh-CCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC-CCceEEEec
Q 008516           12 GAKVLMVGA-GGIGCELLKTLALS-GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR-PQMSITAHH   88 (563)
Q Consensus        12 ~~~VlvvGa-GgiG~ellknLal~-Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~n-p~v~I~~~~   88 (563)
                      +.||.|+|+ |.+|..+++.+... |+.-+-++|.+.-   .+      ...|+|..         .... .++.+   .
T Consensus         5 ~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~---~~------~g~d~~~~---------~g~~~~~v~~---~   63 (273)
T 1dih_A            5 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGS---SL------LGSDAGEL---------AGAGKTGVTV---Q   63 (273)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTC---TT------CSCCTTCS---------SSSSCCSCCE---E
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCch---hh------hhhhHHHH---------cCCCcCCcee---c
Confidence            468999999 99999999998754 4322225564321   10      01122110         0000 01121   1


Q ss_pred             cCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccc
Q 008516           89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGF  139 (563)
Q Consensus        89 ~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~  139 (563)
                      .++      .+.+.+.|+||+.+ ++++-...-+.|.++++|++-+-+ |+
T Consensus        64 ~dl------~~~l~~~DvVIDft-~p~~~~~~~~~a~~~G~~vVigTt-G~  106 (273)
T 1dih_A           64 SSL------DAVKDDFDVFIDFT-RPEGTLNHLAFCRQHGKGMVIGTT-GF  106 (273)
T ss_dssp             SCS------TTTTTSCSEEEECS-CHHHHHHHHHHHHHTTCEEEECCC-CC
T ss_pred             CCH------HHHhcCCCEEEEcC-ChHHHHHHHHHHHhCCCCEEEECC-CC
Confidence            122      23456889999987 466667777889999999765544 54

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=89.01  E-value=0.99  Score=45.78  Aligned_cols=34  Identities=38%  Similarity=0.529  Sum_probs=29.3

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCC-CeEEEEeCCc
Q 008516           13 AKVLMVGA-GGIGCELLKTLALSGF-QDIHIIDMDT   46 (563)
Q Consensus        13 ~~VlvvGa-GgiG~ellknLal~Gv-g~I~iiD~D~   46 (563)
                      .||.|+|+ |.+|..++..|+..|. .+|.++|.+.
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~   36 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc
Confidence            38999998 9999999999998885 6799999653

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=88.94  E-value=0.88  Score=44.76  Aligned_cols=34  Identities=26%  Similarity=0.443  Sum_probs=27.9

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +.+++++|.| .||||.++++.|+..|. ++.++|.
T Consensus        27 ~~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r   61 (283)
T 1g0o_A           27 LEGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYA   61 (283)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            5567788887 78999999999999997 5777663

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=88.90  E-value=0.98  Score=44.90  Aligned_cols=35  Identities=17%  Similarity=0.333  Sum_probs=29.0

Q ss_pred             HHcCCcEEEECCc-H--HHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVGAG-G--IGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvGaG-g--iG~ellknLal~Gvg~I~iiD~   44 (563)
                      .|++++++|.|++ +  ||.++++.|+..|. ++.++|.
T Consensus        28 ~l~gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r   65 (293)
T 3grk_A           28 LLQGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQ   65 (293)
T ss_dssp             TTTTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             cCCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcC
Confidence            4778899999973 4  99999999999997 5777764

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=88.89  E-value=1.1  Score=42.84  Aligned_cols=35  Identities=34%  Similarity=0.609  Sum_probs=29.2

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +.+++++|.| .||||.++++.|+..|. ++.++|.+
T Consensus         9 ~~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~   44 (254)
T 2wsb_A            9 LDGACAAVTGAGSGIGLEICRAFAASGA-RLILIDRE   44 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5677899998 68999999999999996 57777643

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=88.73  E-value=1.8  Score=44.05  Aligned_cols=32  Identities=28%  Similarity=0.393  Sum_probs=27.6

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        13 ~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ++|+|.| .|+||..+++.|+..|. +++++|.+
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   57 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGY-EVHGIVRR   57 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCC-EEEEEECC
Confidence            5799999 59999999999999995 78888754

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=88.67  E-value=0.95  Score=44.33  Aligned_cols=36  Identities=31%  Similarity=0.536  Sum_probs=29.9

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ++.+++++|.| .||||.++++.|+..|. ++.++|.+
T Consensus         6 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   42 (270)
T 1yde_A            6 RYAGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKD   42 (270)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            36678899998 68999999999999996 67777643

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=88.62  E-value=0.4  Score=47.60  Aligned_cols=31  Identities=35%  Similarity=0.572  Sum_probs=27.9

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .||.|+|+|.+|+.++..|+..|. +++++|.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r   34 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGN-DVTLIDQ   34 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCC-cEEEEEC
Confidence            589999999999999999999996 7888764

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=88.60  E-value=0.71  Score=45.51  Aligned_cols=35  Identities=17%  Similarity=0.367  Sum_probs=29.5

Q ss_pred             HcCCcEEEECC---cHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           10 IKGAKVLMVGA---GGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        10 L~~~~VlvvGa---GgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +.+++++|.|+   ||||.++++.|+..|. ++.++|.+
T Consensus        19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~   56 (285)
T 2p91_A           19 LEGKRALITGVANERSIAYGIAKSFHREGA-QLAFTYAT   56 (285)
T ss_dssp             TTTCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             cCCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCC
Confidence            56778999997   6999999999999996 67777744

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=88.58  E-value=0.47  Score=48.57  Aligned_cols=93  Identities=18%  Similarity=0.134  Sum_probs=58.7

Q ss_pred             HHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEE
Q 008516            7 LEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITA   86 (563)
Q Consensus         7 q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~   86 (563)
                      ...|..++|.|||+|.+|..++++|...|+ ++++.|.+.                   .++.   +...+.  ++.+. 
T Consensus        11 ~~~l~~~~I~IIG~G~mG~alA~~L~~~G~-~V~~~~~~~-------------------~~~~---~~a~~~--G~~~~-   64 (338)
T 1np3_A           11 LSIIQGKKVAIIGYGSQGHAHACNLKDSGV-DVTVGLRSG-------------------SATV---AKAEAH--GLKVA-   64 (338)
T ss_dssp             HHHHHTSCEEEECCSHHHHHHHHHHHHTTC-CEEEECCTT-------------------CHHH---HHHHHT--TCEEE-
T ss_pred             cchhcCCEEEEECchHHHHHHHHHHHHCcC-EEEEEECCh-------------------HHHH---HHHHHC--CCEEc-
Confidence            456888999999999999999999999997 577766321                   1111   111122  22221 


Q ss_pred             eccCCCCCcchHhhcccccEEEEccCCHHHHHHHH-HHHH--hcCCCEEEe
Q 008516           87 HHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVN-RLCL--AADVPLVES  134 (563)
Q Consensus        87 ~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in-~~c~--~~~~pli~~  134 (563)
                         .      ..+.++++|+|+.|+-....+..+. ++..  ..+..++++
T Consensus        65 ---~------~~e~~~~aDvVilavp~~~~~~v~~~~i~~~l~~~~ivi~~  106 (338)
T 1np3_A           65 ---D------VKTAVAAADVVMILTPDEFQGRLYKEEIEPNLKKGATLAFA  106 (338)
T ss_dssp             ---C------HHHHHHTCSEEEECSCHHHHHHHHHHHTGGGCCTTCEEEES
T ss_pred             ---c------HHHHHhcCCEEEEeCCcHHHHHHHHHHHHhhCCCCCEEEEc
Confidence               1      2356789999999997666655555 4321  224445554

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=88.57  E-value=1.8  Score=44.15  Aligned_cols=101  Identities=14%  Similarity=0.184  Sum_probs=61.2

Q ss_pred             cCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           11 KGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        11 ~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      ..++|+|.|+ |.+|..+++.|+..|. ++++++.+.-                 +.++    +.+.. .+  .++.+..
T Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~-----------------~~~~----~~l~~-~~--~v~~v~~   58 (352)
T 1xgk_A            4 QKKTIAVVGATGRQGASLIRVAAAVGH-HVRAQVHSLK-----------------GLIA----EELQA-IP--NVTLFQG   58 (352)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCSC-----------------SHHH----HHHHT-ST--TEEEEES
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCCC-----------------hhhH----HHHhh-cC--CcEEEEC
Confidence            3578999995 9999999999999885 5777653210                 1111    22222 12  3455566


Q ss_pred             C-CCCCcchHhhcccccEEEEccC------CHHHHHHHHHHHHhcC-C-CEEEeccc
Q 008516           90 N-VKDPKFNVEFFKQFNVVLNGLD------NLDARRHVNRLCLAAD-V-PLVESGTT  137 (563)
Q Consensus        90 ~-i~~~~~~~~~~~~~dvVi~alD------n~~ar~~in~~c~~~~-~-pli~~gt~  137 (563)
                      + +++...-.+.+++.|+||.+..      |... ..+-+.|.+.+ + .+|..++.
T Consensus        59 D~l~d~~~l~~~~~~~d~Vi~~a~~~~~~~~~~~-~~l~~aa~~~g~v~~~V~~SS~  114 (352)
T 1xgk_A           59 PLLNNVPLMDTLFEGAHLAFINTTSQAGDEIAIG-KDLADAAKRAGTIQHYIYSSMP  114 (352)
T ss_dssp             CCTTCHHHHHHHHTTCSEEEECCCSTTSCHHHHH-HHHHHHHHHHSCCSEEEEEECC
T ss_pred             CccCCHHHHHHHHhcCCEEEEcCCCCCcHHHHHH-HHHHHHHHHcCCccEEEEeCCc
Confidence            6 6543333456788999986432      2334 45556667766 4 56666554

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=88.51  E-value=1  Score=42.74  Aligned_cols=32  Identities=22%  Similarity=0.411  Sum_probs=26.3

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        13 ~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ++|+|.| .||||.++++.|+..|. ++.++|.+
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~   34 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGK-ATYLTGRS   34 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTC-CEEEEESC
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            3688888 67999999999999997 48887754

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=88.51  E-value=0.65  Score=44.97  Aligned_cols=37  Identities=16%  Similarity=0.333  Sum_probs=31.2

Q ss_pred             HHHcCCcEEEECC---cHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            8 EAIKGAKVLMVGA---GGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         8 ~kL~~~~VlvvGa---GgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ..+.+++|+|.|+   ||||.++++.|+..|. ++.++|.+
T Consensus        10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~-~V~~~~r~   49 (271)
T 3ek2_A           10 GFLDGKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYVG   49 (271)
T ss_dssp             CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             cccCCCEEEEeCCCCCCcHHHHHHHHHHHcCC-CEEEEecc
Confidence            4577899999996   6999999999999997 68887743

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=88.47  E-value=1.2  Score=45.51  Aligned_cols=32  Identities=25%  Similarity=0.334  Sum_probs=27.8

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           13 AKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        13 ~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ++|+|.|+ |+||..+++.|+..|. +++++|.+
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~-~V~~~~r~   61 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGY-EVHGLIRR   61 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC-EEEEEecC
Confidence            58999996 9999999999999995 78888754

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=88.40  E-value=1.7  Score=44.16  Aligned_cols=75  Identities=20%  Similarity=0.232  Sum_probs=49.2

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHh-CC-CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           13 AKVLMVG-AGGIGCELLKTLALS-GF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        13 ~~VlvvG-aGgiG~ellknLal~-Gv-g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      .||.|+| +|.+|..++..|+.. ++ .+|.++|.+.                    |++--+.-+++....+++..+..
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~--------------------~~~G~a~Dl~~~~~~~~v~~~~~   60 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP--------------------VTPGVAVDLSHIPTAVKIKGFSG   60 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST--------------------THHHHHHHHHTSCSSEEEEEECS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC--------------------CchhHHHHhhCCCCCceEEEecC
Confidence            4899999 899999999999886 65 5799988432                    11111233444433456665422


Q ss_pred             CCCCCcchHhhcccccEEEEccC
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGLD  112 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~alD  112 (563)
                        +   .+.+-++++|+||.+..
T Consensus        61 --~---~~~~~~~~aDivii~ag   78 (312)
T 3hhp_A           61 --E---DATPALEGADVVLISAG   78 (312)
T ss_dssp             --S---CCHHHHTTCSEEEECCS
T ss_pred             --C---CcHHHhCCCCEEEEeCC
Confidence              1   12456899999988754

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=88.39  E-value=0.4  Score=49.99  Aligned_cols=35  Identities=23%  Similarity=0.470  Sum_probs=31.8

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .+..++|+|+|+|++|..+++.+...|. +++++|.
T Consensus       165 ~l~g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~  199 (377)
T 2vhw_A          165 GVEPADVVVIGAGTAGYNAARIANGMGA-TVTVLDI  199 (377)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeC
Confidence            3678999999999999999999999998 7888874

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=88.37  E-value=0.4  Score=48.28  Aligned_cols=31  Identities=19%  Similarity=0.328  Sum_probs=26.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +.||+|+|+|++|+.++..|+ .|. ++++++.
T Consensus         2 ~mkI~IiGaGa~G~~~a~~L~-~g~-~V~~~~r   32 (307)
T 3ego_A            2 SLKIGIIGGGSVGLLCAYYLS-LYH-DVTVVTR   32 (307)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTS-EEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHh-cCC-ceEEEEC
Confidence            478999999999999999999 884 6887753

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=88.32  E-value=0.42  Score=47.79  Aligned_cols=32  Identities=22%  Similarity=0.489  Sum_probs=28.6

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .+|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~-~V~~~d~~   47 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQT   47 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            479999999999999999999997 78888754

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=88.28  E-value=0.48  Score=45.10  Aligned_cols=32  Identities=28%  Similarity=0.401  Sum_probs=27.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ..+|.|+|+|.+|..+++.|+..|. +++++|.
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~-~V~~~~r   59 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGF-KVVVGSR   59 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTC-CEEEEES
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            4689999999999999999999997 6777774

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=88.28  E-value=2.3  Score=45.76  Aligned_cols=33  Identities=21%  Similarity=0.303  Sum_probs=28.2

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        12 ~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .++|+|.| .|.||..+++.|...|. +++.++.+
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~-~V~~l~R~  180 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGH-EVIQLVRK  180 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            46899999 69999999999999997 67777654

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=88.25  E-value=0.84  Score=44.60  Aligned_cols=34  Identities=32%  Similarity=0.565  Sum_probs=29.0

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +.+++++|.| .||||.++++.|+..|. ++.++|.
T Consensus         4 l~~k~vlITGas~gIG~aia~~l~~~G~-~V~~~~r   38 (263)
T 2a4k_A            4 LSGKTILVTGAASGIGRAALDLFAREGA-SLVAVDR   38 (263)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            6678899998 58999999999999997 6777764

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=88.12  E-value=0.42  Score=49.39  Aligned_cols=34  Identities=32%  Similarity=0.544  Sum_probs=31.1

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ++..+|+|+|+|++|..+++.+...|. +++++|.
T Consensus       165 l~~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr  198 (361)
T 1pjc_A          165 VKPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDI  198 (361)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeC
Confidence            567899999999999999999999999 8999874

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=88.12  E-value=1.4  Score=43.85  Aligned_cols=35  Identities=29%  Similarity=0.373  Sum_probs=25.4

Q ss_pred             HcCCcEEEECCcHHHHH-HHHHHHHh-CCCeEEEEeC
Q 008516           10 IKGAKVLMVGAGGIGCE-LLKTLALS-GFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~e-llknLal~-Gvg~I~iiD~   44 (563)
                      ++..||.|||+|.+|.. .++.|... |+.-+.+.|.
T Consensus         4 M~~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~   40 (308)
T 3uuw_A            4 MKNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTP   40 (308)
T ss_dssp             -CCCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECS
T ss_pred             cccCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECC
Confidence            45679999999999996 89988764 4433336653

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=88.06  E-value=0.35  Score=50.06  Aligned_cols=98  Identities=17%  Similarity=0.270  Sum_probs=56.8

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhC-----CCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEE
Q 008516           12 GAKVLMVG-AGGIGCELLKTLALSG-----FQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSIT   85 (563)
Q Consensus        12 ~~~VlvvG-aGgiG~ellknLal~G-----vg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~   85 (563)
                      ..||+|+| .|.+|.++++.|...+     .-+++.+-               +..+.|+.        +....|...-.
T Consensus         9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~---------------s~~~agk~--------~~~~~~~l~~~   65 (352)
T 2nqt_A            9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALT---------------AATSAGST--------LGEHHPHLTPL   65 (352)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEE---------------ESSCTTSB--------GGGTCTTCGGG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEE---------------CCCcCCCc--------hhhhccccccc
Confidence            35899999 8999999999999776     33444432               11123331        11122221100


Q ss_pred             EeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccc
Q 008516           86 AHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT  137 (563)
Q Consensus        86 ~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~  137 (563)
                       ....+.  ..+.+-|.+.|+|+.|+....++.++..+  +.++.+|+.++.
T Consensus        66 -~~~~~~--~~~~~~~~~~DvVf~alg~~~s~~~~~~~--~~G~~vIDlSa~  112 (352)
T 2nqt_A           66 -AHRVVE--PTEAAVLGGHDAVFLALPHGHSAVLAQQL--SPETLIIDCGAD  112 (352)
T ss_dssp             -TTCBCE--ECCHHHHTTCSEEEECCTTSCCHHHHHHS--CTTSEEEECSST
T ss_pred             -ceeeec--cCCHHHhcCCCEEEECCCCcchHHHHHHH--hCCCEEEEECCC
Confidence             000010  01223366899999999877777777666  677778876543

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=88.01  E-value=1.8  Score=43.23  Aligned_cols=79  Identities=24%  Similarity=0.289  Sum_probs=46.4

Q ss_pred             cCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC-CceEEEec
Q 008516           11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP-QMSITAHH   88 (563)
Q Consensus        11 ~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np-~v~I~~~~   88 (563)
                      .+++|+|.| +|.||+.+++.|...|. +++.++.+.   ++.             .|..    .+.++.. .-+++.+.
T Consensus         4 ~~~~vlVTGatGfIG~~l~~~L~~~G~-~V~~~~r~~---~~~-------------~~~~----~~~~~~~~~~~~~~~~   62 (337)
T 2c29_D            4 QSETVCVTGASGFIGSWLVMRLLERGY-TVRATVRDP---TNV-------------KKVK----HLLDLPKAETHLTLWK   62 (337)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCT---TCH-------------HHHH----HHHTSTTHHHHEEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCC-EEEEEECCc---chh-------------HHHH----HHHhcccCCCeEEEEE
Confidence            567899998 89999999999999996 565544221   000             0111    1111110 11355566


Q ss_pred             cCCCCCcchHhhcccccEEEEc
Q 008516           89 ANVKDPKFNVEFFKQFNVVLNG  110 (563)
Q Consensus        89 ~~i~~~~~~~~~~~~~dvVi~a  110 (563)
                      .++++...-.+.++++|+||.+
T Consensus        63 ~Dl~d~~~~~~~~~~~d~Vih~   84 (337)
T 2c29_D           63 ADLADEGSFDEAIKGCTGVFHV   84 (337)
T ss_dssp             CCTTSTTTTHHHHTTCSEEEEC
T ss_pred             cCCCCHHHHHHHHcCCCEEEEe
Confidence            6775543335667889999884

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=87.95  E-value=1  Score=43.81  Aligned_cols=35  Identities=14%  Similarity=0.362  Sum_probs=29.5

Q ss_pred             HcCCcEEEECC---cHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           10 IKGAKVLMVGA---GGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        10 L~~~~VlvvGa---GgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +.+++++|.|+   ||||.++++.|+..|. ++.++|.+
T Consensus         7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~   44 (265)
T 1qsg_A            7 LSGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQN   44 (265)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEcCc
Confidence            56778999997   6999999999999996 58887754

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=87.94  E-value=1.1  Score=46.76  Aligned_cols=32  Identities=25%  Similarity=0.520  Sum_probs=28.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEe
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      ..+|+|+|+|++|...+..+...|.+++..+|
T Consensus       214 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~  245 (404)
T 3ip1_A          214 GDNVVILGGGPIGLAAVAILKHAGASKVILSE  245 (404)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEC
Confidence            45799999999999999999999998888876

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=87.90  E-value=0.93  Score=43.99  Aligned_cols=35  Identities=20%  Similarity=0.417  Sum_probs=29.4

Q ss_pred             HcCCcEEEECC---cHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           10 IKGAKVLMVGA---GGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        10 L~~~~VlvvGa---GgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +++++++|.|+   ||||.++++.|+..|. ++.++|.+
T Consensus         6 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~   43 (261)
T 2wyu_A            6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQA   43 (261)
T ss_dssp             CTTCEEEEESCCSSSSHHHHHHHHHHHHTC-EEEEEESC
T ss_pred             CCCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCC
Confidence            56778999997   6999999999999996 57777643

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=87.87  E-value=0.77  Score=49.55  Aligned_cols=93  Identities=14%  Similarity=0.195  Sum_probs=56.8

Q ss_pred             cCCcEEEECCcHH--HHHHHHHHHHh-C--CCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHH----HHhhCCC
Q 008516           11 KGAKVLMVGAGGI--GCELLKTLALS-G--FQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDA----VLKFRPQ   81 (563)
Q Consensus        11 ~~~~VlvvGaGgi--G~ellknLal~-G--vg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~----l~~~np~   81 (563)
                      +..||.|||+|++  |..++..|+.. +  ..+++++|.|.                   .|++.+.+.    +......
T Consensus         2 ~~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~-------------------e~l~~~~~~~~~~l~~~~~~   62 (480)
T 1obb_A            2 PSVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDE-------------------ERLDAILTIAKKYVEEVGAD   62 (480)
T ss_dssp             CCCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCH-------------------HHHHHHHHHHHHHHHHTTCC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCH-------------------HHHHHHHHHHHHHhccCCCC
Confidence            3579999999996  67778888753 3  36799998433                   233322222    2233344


Q ss_pred             ceEEEeccCCCCCcchHhhcccccEEEEccCC--HHHHHHHHHHHHhcCC
Q 008516           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDN--LDARRHVNRLCLAADV  129 (563)
Q Consensus        82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn--~~ar~~in~~c~~~~~  129 (563)
                      .+|.+..+      . .+-++++|+||.+...  .+.|....++..+++.
T Consensus        63 ~~I~~ttD------~-~eal~dAD~VIiaagv~~~~~~~~dE~ip~K~g~  105 (480)
T 1obb_A           63 LKFEKTMN------L-DDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGY  105 (480)
T ss_dssp             CEEEEESC------H-HHHHTTCSEEEECCCTTHHHHHHHHHHHHHHTTC
T ss_pred             cEEEEECC------H-HHHhCCCCEEEECCCccccccccccccccccccc
Confidence            56655321      1 2447899999998865  3344445556666654

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=87.77  E-value=0.55  Score=45.58  Aligned_cols=35  Identities=31%  Similarity=0.459  Sum_probs=29.0

Q ss_pred             HHcCCcEEEECCc---HHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVGAG---GIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvGaG---giG~ellknLal~Gvg~I~iiD~   44 (563)
                      .+++++++|.|++   |||.++++.|+..|. ++.++|.
T Consensus        17 ~l~~k~vlITGas~~~giG~~~a~~l~~~G~-~v~~~~~   54 (267)
T 3gdg_A           17 SLKGKVVVVTGASGPKGMGIEAARGCAEMGA-AVAITYA   54 (267)
T ss_dssp             CCTTCEEEETTCCSSSSHHHHHHHHHHHTSC-EEEECBS
T ss_pred             CcCCCEEEEECCCCCCChHHHHHHHHHHCCC-eEEEEeC
Confidence            4678889999975   999999999999997 5666653

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=87.74  E-value=1.1  Score=44.59  Aligned_cols=35  Identities=14%  Similarity=0.413  Sum_probs=29.9

Q ss_pred             HHcCCcEEEECCc---HHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVGAG---GIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvGaG---giG~ellknLal~Gvg~I~iiD~   44 (563)
                      .+++++++|.|++   |||.++++.|+..|. ++.++|.
T Consensus        27 ~l~~k~vlVTGasg~~GIG~~ia~~la~~G~-~V~~~~r   64 (296)
T 3k31_A           27 LMEGKKGVIIGVANDKSLAWGIAKAVCAQGA-EVALTYL   64 (296)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEES
T ss_pred             ccCCCEEEEEeCCCCCCHHHHHHHHHHHCCC-EEEEEeC
Confidence            3677889999986   999999999999997 5778774

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=87.74  E-value=0.99  Score=44.46  Aligned_cols=62  Identities=21%  Similarity=0.315  Sum_probs=41.2

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      |+++.++|-| .+|||.++++.|+..|. ++.+.|.                   ...+.+.+++.+++..  .++..+.
T Consensus         7 L~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~-------------------~~~~~~~~~~~l~~~g--~~~~~~~   64 (255)
T 4g81_D            7 LTGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDI-------------------RATLLAESVDTLTRKG--YDAHGVA   64 (255)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCS-------------------CHHHHHHHHHHHHHTT--CCEEECC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEEC-------------------CHHHHHHHHHHHHhcC--CcEEEEE
Confidence            5667777776 78999999999999997 5777652                   2234444555555543  3455566


Q ss_pred             cCCCC
Q 008516           89 ANVKD   93 (563)
Q Consensus        89 ~~i~~   93 (563)
                      .++++
T Consensus        65 ~Dv~~   69 (255)
T 4g81_D           65 FDVTD   69 (255)
T ss_dssp             CCTTC
T ss_pred             eeCCC
Confidence            66543

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=87.72  E-value=0.46  Score=49.22  Aligned_cols=34  Identities=26%  Similarity=0.480  Sum_probs=31.1

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +..++|+|+|+|++|..+++.+...|. +++++|.
T Consensus       164 l~~~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~  197 (369)
T 2eez_A          164 VAPASVVILGGGTVGTNAAKIALGMGA-QVTILDV  197 (369)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEEC
Confidence            678899999999999999999999998 7888873

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=87.70  E-value=0.86  Score=44.50  Aligned_cols=36  Identities=19%  Similarity=0.272  Sum_probs=28.6

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .+.+++++|.| .||||.++++.|+..|. ++.++|.+
T Consensus        24 ~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~   60 (260)
T 3gem_A           24 TLSSAPILITGASQRVGLHCALRLLEHGH-RVIISYRT   60 (260)
T ss_dssp             ---CCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            46778899998 58999999999999997 58888754

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=87.65  E-value=0.5  Score=47.99  Aligned_cols=33  Identities=27%  Similarity=0.389  Sum_probs=28.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ..||.|+|+|.+|+.++..|+..|. +++++|.+
T Consensus         4 ~mki~iiG~G~~G~~~a~~L~~~g~-~V~~~~r~   36 (359)
T 1bg6_A            4 SKTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDID   36 (359)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            4689999999999999999999996 58887743

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=87.61  E-value=1.1  Score=43.03  Aligned_cols=63  Identities=25%  Similarity=0.248  Sum_probs=41.1

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      +++++++|.| .||||.++++.|+..|. ++.+++..                  ...+.+.+.+.+.+..  .++..+.
T Consensus         5 l~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~~~------------------~~~~~~~~~~~~~~~~--~~~~~~~   63 (255)
T 3icc_A            5 LKGKVALVTGASRGIGRAIAKRLANDGA-LVAIHYGN------------------RKEEAEETVYEIQSNG--GSAFSIG   63 (255)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESS------------------CSHHHHHHHHHHHHTT--CEEEEEE
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCC------------------chHHHHHHHHHHHhcC--CceEEEe
Confidence            5677888888 58999999999999997 45554321                  1234445555555543  3555666


Q ss_pred             cCCCC
Q 008516           89 ANVKD   93 (563)
Q Consensus        89 ~~i~~   93 (563)
                      .++++
T Consensus        64 ~D~~~   68 (255)
T 3icc_A           64 ANLES   68 (255)
T ss_dssp             CCTTS
T ss_pred             cCcCC
Confidence            66643

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=87.38  E-value=0.46  Score=51.31  Aligned_cols=35  Identities=23%  Similarity=0.447  Sum_probs=31.3

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      |.+++|+|+|+|+||..+++.|+..|. ++.++|.+
T Consensus       263 L~GKtVvVtGaGgIG~aiA~~Laa~GA-~Viv~D~~  297 (488)
T 3ond_A          263 IAGKVAVVAGYGDVGKGCAAALKQAGA-RVIVTEID  297 (488)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            578899999999999999999999998 78887753

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=87.37  E-value=0.55  Score=45.29  Aligned_cols=38  Identities=21%  Similarity=0.336  Sum_probs=26.5

Q ss_pred             HHHHHHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEe
Q 008516            5 RQLEAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus         5 ~~q~kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      +....+++++|+|.| .||||.++++.|+..|. ++.++|
T Consensus         6 ~~~~~~~~k~vlITGas~giG~~ia~~l~~~G~-~v~~~~   44 (256)
T 3ezl_A            6 HHHMVMSQRIAYVTGGMGGIGTSICQRLHKDGF-RVVAGC   44 (256)
T ss_dssp             -------CEEEEETTTTSHHHHHHHHHHHHTTE-EEEEEE
T ss_pred             CCCCCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEe
Confidence            445567888899997 68999999999999997 466655

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=87.35  E-value=1.7  Score=41.72  Aligned_cols=87  Identities=13%  Similarity=0.211  Sum_probs=51.1

Q ss_pred             CCcEEEECCcHHHHHHHHH--HHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           12 GAKVLMVGAGGIGCELLKT--LALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellkn--Lal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      ..+|+|||+|.+|..+++.  +...|+.-+-++|.|.=              .+|+.           + .++.|.. ..
T Consensus        85 ~~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~--------------k~g~~-----------i-~gv~V~~-~~  137 (215)
T 2vt3_A           85 MTDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINES--------------KIGTE-----------V-GGVPVYN-LD  137 (215)
T ss_dssp             --CEEEECCSHHHHHHHHCC------CCEEEEEESCTT--------------TTTCE-----------E-TTEEEEE-GG
T ss_pred             CCEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHH--------------HHHhH-----------h-cCCeeec-hh
Confidence            4689999999999999994  34557777778885542              11210           0 1233332 11


Q ss_pred             CCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEE
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLV  132 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli  132 (563)
                      +      -.++++..|+|+-|+.+... ..+-+.|...++.-|
T Consensus       138 d------l~eli~~~D~ViIAvPs~~~-~ei~~~l~~aGi~~I  173 (215)
T 2vt3_A          138 D------LEQHVKDESVAILTVPAVAA-QSITDRLVALGIKGI  173 (215)
T ss_dssp             G------HHHHCSSCCEEEECSCHHHH-HHHHHHHHHTTCCEE
T ss_pred             h------HHHHHHhCCEEEEecCchhH-HHHHHHHHHcCCCEE
Confidence            1      23455555999999876544 456677778877644

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=87.33  E-value=1.2  Score=43.46  Aligned_cols=62  Identities=19%  Similarity=0.262  Sum_probs=38.4

Q ss_pred             cCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        11 ~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      .+++|+|.| .||||.++++.|+..|.. +.+++..                  ...+.+.+.+.+.+..  .++..+..
T Consensus        25 ~~k~vlITGas~gIG~a~a~~l~~~G~~-V~~~~~~------------------~~~~~~~~~~~~~~~~--~~~~~~~~   83 (272)
T 4e3z_A           25 DTPVVLVTGGSRGIGAAVCRLAARQGWR-VGVNYAA------------------NREAADAVVAAITESG--GEAVAIPG   83 (272)
T ss_dssp             CSCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESS------------------CHHHHHHHHHHHHHTT--CEEEEEEC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCC------------------ChhHHHHHHHHHHhcC--CcEEEEEc
Confidence            345567777 689999999999999974 5444211                  1234445555555543  35556666


Q ss_pred             CCCC
Q 008516           90 NVKD   93 (563)
Q Consensus        90 ~i~~   93 (563)
                      ++++
T Consensus        84 Dl~~   87 (272)
T 4e3z_A           84 DVGN   87 (272)
T ss_dssp             CTTC
T ss_pred             CCCC
Confidence            6643

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=87.32  E-value=0.62  Score=44.55  Aligned_cols=34  Identities=32%  Similarity=0.401  Sum_probs=30.5

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ++.+|+|||+|..|++++..|++.|. +++++|..
T Consensus         2 ~~~dVvVVGgG~aGl~aA~~la~~g~-~v~lie~~   35 (232)
T 2cul_A            2 AAYQVLIVGAGFSGAETAFWLAQKGV-RVGLLTQS   35 (232)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC-CEEEEecC
Confidence            45689999999999999999999998 68898875

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=87.31  E-value=1.2  Score=43.29  Aligned_cols=34  Identities=18%  Similarity=0.410  Sum_probs=26.2

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEe
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      .+.++.++|.| .||||.++++.|+..|. ++.++|
T Consensus        22 ~~~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~   56 (269)
T 3gk3_A           22 MQAKRVAFVTGGMGGLGAAISRRLHDAGM-AVAVSH   56 (269)
T ss_dssp             --CCCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEE
T ss_pred             hhcCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEc
Confidence            35566677877 68999999999999997 466665

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=87.31  E-value=1.5  Score=42.30  Aligned_cols=35  Identities=31%  Similarity=0.527  Sum_probs=29.5

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +.+++++|.| .||||.++++.|+..|. ++.++|.+
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   39 (256)
T 2d1y_A            4 FAGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLR   39 (256)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5678899998 58999999999999996 68787643

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=87.31  E-value=0.61  Score=50.37  Aligned_cols=34  Identities=18%  Similarity=0.360  Sum_probs=30.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~   46 (563)
                      .++|.|||+|.+|..++++|+..|. ++++.|.+.
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~   37 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGF-VVCAFNRTV   37 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTC-CEEEECSST
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            4689999999999999999999997 688888654

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=87.26  E-value=1.1  Score=46.60  Aligned_cols=92  Identities=22%  Similarity=0.346  Sum_probs=57.2

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCe--EEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516           12 GAKVLMVG-AGGIGCELLKTLALSGFQD--IHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        12 ~~~VlvvG-aGgiG~ellknLal~Gvg~--I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      ..||.||| .|.+|.|+++.|...++-.  +.++..               .+..|+.-+         +. +..+... 
T Consensus         2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as---------------~~saG~~~~---------~~-~~~~~~~-   55 (366)
T 3pwk_A            2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLAS---------------ARSAGKSLK---------FK-DQDITIE-   55 (366)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEEC---------------TTTTTCEEE---------ET-TEEEEEE-
T ss_pred             CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEc---------------cccCCCcce---------ec-CCCceEe-
Confidence            45899999 5778999999999886644  444332               223333221         00 1112111 


Q ss_pred             cCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEecc
Q 008516           89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGT  136 (563)
Q Consensus        89 ~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt  136 (563)
                       .+.     .+.+++.|+|+.|+....++.+.... ...|..+|+.+.
T Consensus        56 -~~~-----~~~~~~~Dvvf~a~~~~~s~~~a~~~-~~~G~~vIDlSa   96 (366)
T 3pwk_A           56 -ETT-----ETAFEGVDIALFSAGSSTSAKYAPYA-VKAGVVVVDNTS   96 (366)
T ss_dssp             -ECC-----TTTTTTCSEEEECSCHHHHHHHHHHH-HHTTCEEEECSS
T ss_pred             -eCC-----HHHhcCCCEEEECCChHhHHHHHHHH-HHCCCEEEEcCC
Confidence             111     12357899999999887777776554 567888888765

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=87.26  E-value=1.3  Score=44.20  Aligned_cols=37  Identities=19%  Similarity=0.367  Sum_probs=31.0

Q ss_pred             HHHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         8 ~kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +||+++.++|-| .+|||-++++.|+..|. ++.++|.+
T Consensus        25 ~rL~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~   62 (273)
T 4fgs_A           25 QRLNAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRR   62 (273)
T ss_dssp             CTTTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             chhCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            367888888888 67999999999999998 68888743

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=87.25  E-value=3.5  Score=42.06  Aligned_cols=34  Identities=24%  Similarity=0.482  Sum_probs=27.6

Q ss_pred             cCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        11 ~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ..++|||.| +|.||..+++.|+..|. +++++|..
T Consensus        10 ~~~~vlVTG~tGfIG~~l~~~L~~~G~-~V~~~~r~   44 (404)
T 1i24_A           10 HGSRVMVIGGDGYCGWATALHLSKKNY-EVCIVDNL   44 (404)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CCCeEEEeCCCcHHHHHHHHHHHhCCC-eEEEEEec
Confidence            457899998 68899999999999996 78888753

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=87.16  E-value=2  Score=43.77  Aligned_cols=33  Identities=33%  Similarity=0.464  Sum_probs=29.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ..+|+|.|+|++|...+......|...+..+|.
T Consensus       180 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~  212 (363)
T 3m6i_A          180 GDPVLICGAGPIGLITMLCAKAAGACPLVITDI  212 (363)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCSEEEEES
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            578999999999999999999999988888873

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=87.13  E-value=0.52  Score=48.15  Aligned_cols=33  Identities=21%  Similarity=0.311  Sum_probs=29.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ..+|+|+|+|++|...+..+..+|.+++..+|.
T Consensus       167 g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~  199 (352)
T 3fpc_A          167 GDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGS  199 (352)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTCSSEEEECC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECC
Confidence            568999999999999999999999988888864

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=87.11  E-value=1.8  Score=44.26  Aligned_cols=38  Identities=32%  Similarity=0.385  Sum_probs=26.1

Q ss_pred             HHHHcCCcEEEECCcHHHHHHHHHHH-H-hCCCeEEEEeC
Q 008516            7 LEAIKGAKVLMVGAGGIGCELLKTLA-L-SGFQDIHIIDM   44 (563)
Q Consensus         7 q~kL~~~~VlvvGaGgiG~ellknLa-l-~Gvg~I~iiD~   44 (563)
                      ..+++..||.|||+|.+|...++.|. . .|+.-+.+.|.
T Consensus        18 ~~~m~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~   57 (357)
T 3ec7_A           18 YFQGMTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDI   57 (357)
T ss_dssp             ----CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECS
T ss_pred             ccCCCeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeC
Confidence            34556679999999999999999998 4 35433445553

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=87.08  E-value=0.59  Score=45.39  Aligned_cols=31  Identities=23%  Similarity=0.342  Sum_probs=27.1

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEe
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      .||.|||+|.+|+.+++.|+..|..+++++|
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~   31 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIAN   31 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEEC
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEEC
Confidence            3799999999999999999999954677776

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=87.07  E-value=0.57  Score=45.98  Aligned_cols=89  Identities=15%  Similarity=0.107  Sum_probs=54.4

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK   92 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~   92 (563)
                      .+|.|||+|.+|..+++.|...|. +++++|.+.                   .+++.+    .+..  +.... ..+  
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~-------------------~~~~~~----~~~g--~~~~~-~~~--   51 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQ-------------------STCEKA----VERQ--LVDEA-GQD--   51 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH-------------------HHHHHH----HHTT--SCSEE-ESC--
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCC-EEEEEECCH-------------------HHHHHH----HhCC--CCccc-cCC--
Confidence            379999999999999999999997 687776331                   122222    1111  11001 111  


Q ss_pred             CCcchHhhcccccEEEEccCCHHHHHHHHHHHHh--cCCCEEEec
Q 008516           93 DPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA--ADVPLVESG  135 (563)
Q Consensus        93 ~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~--~~~pli~~g  135 (563)
                          ..+. .++|+|+.|+-....+..+.++...  .+..+++.+
T Consensus        52 ----~~~~-~~~D~vi~av~~~~~~~~~~~l~~~~~~~~~vv~~~   91 (279)
T 2f1k_A           52 ----LSLL-QTAKIIFLCTPIQLILPTLEKLIPHLSPTAIVTDVA   91 (279)
T ss_dssp             ----GGGG-TTCSEEEECSCHHHHHHHHHHHGGGSCTTCEEEECC
T ss_pred             ----HHHh-CCCCEEEEECCHHHHHHHHHHHHhhCCCCCEEEECC
Confidence                1244 7899999999866556666554322  345566653

>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A

Probab=86.97  E-value=2.1  Score=46.57  Aligned_cols=74  Identities=19%  Similarity=0.351  Sum_probs=50.7

Q ss_pred             HHHcCCcEEEECCcHHHHHHHHHHHH----hCC------CeEEEEeCCccCcc---cCcc--ccCCCCC-CCCchHHHHH
Q 008516            8 EAIKGAKVLMVGAGGIGCELLKTLAL----SGF------QDIHIIDMDTIEVS---NLNR--QFLFRQS-HVGQSKAKVA   71 (563)
Q Consensus         8 ~kL~~~~VlvvGaGgiG~ellknLal----~Gv------g~I~iiD~D~Ve~s---NLnR--qfLf~~~-diGk~Ka~va   71 (563)
                      .+|.+.||++.|+|+-|+-+++.|..    .|+      ++|.++|..-+=..   +|+.  +.+-+.. +.|     .+
T Consensus       278 k~l~d~riv~~GAGaAg~gia~ll~~~~~~~G~~~eeA~~~i~~~D~~Gli~~~r~~l~~~k~~~A~~~~~~~-----~L  352 (555)
T 1gq2_A          278 NRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKGRASLTPEKEHFAHEHCEMK-----NL  352 (555)
T ss_dssp             SCGGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEECBTTCSSCCTTGGGGCBSCCCCC-----CH
T ss_pred             CChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChHHHhCcEEEEECCCeeeCCCCCchHHHHHHHhhcCCCC-----CH
Confidence            36889999999999999999999998    896      69999998655322   3432  1222221 222     26


Q ss_pred             HHHHHhhCCCceEEE
Q 008516           72 RDAVLKFRPQMSITA   86 (563)
Q Consensus        72 ~~~l~~~np~v~I~~   86 (563)
                      .+.++...|++-|-.
T Consensus       353 ~eav~~vkp~vlIG~  367 (555)
T 1gq2_A          353 EDIVKDIKPTVLIGV  367 (555)
T ss_dssp             HHHHHHHCCSEEEEC
T ss_pred             HHHHhhcCCCEEEEe
Confidence            677777777766544

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=86.91  E-value=0.81  Score=46.32  Aligned_cols=34  Identities=26%  Similarity=0.514  Sum_probs=30.3

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ...+|+|.|+|++|...+..+..+|...+..+|.
T Consensus       160 ~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~  193 (346)
T 4a2c_A          160 ENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDI  193 (346)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEES
T ss_pred             CCCEEEEECCCCcchHHHHHHHHcCCcEEEEEec
Confidence            4578999999999999999999999999888873

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=86.82  E-value=0.86  Score=44.09  Aligned_cols=35  Identities=29%  Similarity=0.521  Sum_probs=27.1

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .|+++.++|.| .||||.++++.|+..|. ++.++|.
T Consensus         6 ~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r   41 (257)
T 3tl3_A            6 EIRDAVAVVTGGASGLGLATTKRLLDAGA-QVVVLDI   41 (257)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHHTC-EEEEEES
T ss_pred             eecCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            47788899998 58999999999999997 5777764

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=86.80  E-value=0.95  Score=45.62  Aligned_cols=33  Identities=27%  Similarity=0.339  Sum_probs=27.4

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCC----CeEEEEeCC
Q 008516           13 AKVLMVG-AGGIGCELLKTLALSGF----QDIHIIDMD   45 (563)
Q Consensus        13 ~~VlvvG-aGgiG~ellknLal~Gv----g~I~iiD~D   45 (563)
                      ++|+|.| .|.||+.+++.|...|-    .+++.+|.+
T Consensus         2 ~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~   39 (364)
T 2v6g_A            2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARR   39 (364)
T ss_dssp             EEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESS
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCC
Confidence            5799999 59999999999999882    468887754

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=86.79  E-value=0.64  Score=45.74  Aligned_cols=37  Identities=19%  Similarity=0.361  Sum_probs=30.6

Q ss_pred             HHHcCCcEEEECC---cHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            8 EAIKGAKVLMVGA---GGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         8 ~kL~~~~VlvvGa---GgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ..+++++++|.|+   +|||.++++.|+..|. ++.++|.+
T Consensus        22 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~   61 (280)
T 3nrc_A           22 GFLAGKKILITGLLSNKSIAYGIAKAMHREGA-ELAFTYVG   61 (280)
T ss_dssp             CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTC-EEEEEECT
T ss_pred             cccCCCEEEEECCCCCCCHHHHHHHHHHHcCC-EEEEeeCc
Confidence            4567888999995   4599999999999997 68888754

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=86.73  E-value=1.8  Score=47.00  Aligned_cols=81  Identities=19%  Similarity=0.242  Sum_probs=51.5

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        12 ~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      +++|+|.| .||||.++++.|+..|..++.+++...-+                .++.+.+.+.+...  +.++..+..+
T Consensus       259 ~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~----------------~~~~~~l~~~l~~~--g~~v~~~~~D  320 (511)
T 2z5l_A          259 SGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPE----------------APGAAELAEELRGH--GCEVVHAACD  320 (511)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGG----------------STTHHHHHHHHHTT--TCEEEEEECC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcc----------------cHHHHHHHHHHHhc--CCEEEEEEeC
Confidence            46788886 89999999999999999889888643211                11233344444443  4567777777


Q ss_pred             CCCCcchHhhccc--ccEEEEc
Q 008516           91 VKDPKFNVEFFKQ--FNVVLNG  110 (563)
Q Consensus        91 i~~~~~~~~~~~~--~dvVi~a  110 (563)
                      +++...-..++++  .|+||++
T Consensus       321 vtd~~~v~~~~~~~~ld~VVh~  342 (511)
T 2z5l_A          321 VAERDALAALVTAYPPNAVFHT  342 (511)
T ss_dssp             SSCHHHHHHHHHHSCCSEEEEC
T ss_pred             CCCHHHHHHHHhcCCCcEEEEC
Confidence            7543322334433  6777774

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=86.68  E-value=1.5  Score=42.33  Aligned_cols=33  Identities=21%  Similarity=0.299  Sum_probs=25.8

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCC-eEEEEeC
Q 008516           12 GAKVLMVG-AGGIGCELLKTLALSGFQ-DIHIIDM   44 (563)
Q Consensus        12 ~~~VlvvG-aGgiG~ellknLal~Gvg-~I~iiD~   44 (563)
                      +++++|.| .||||.++++.|+..|.+ .+.+++.
T Consensus         2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r   36 (254)
T 3kzv_A            2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVAR   36 (254)
T ss_dssp             CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEES
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecC
Confidence            46788888 689999999999999865 4555543

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=86.65  E-value=1.1  Score=43.87  Aligned_cols=35  Identities=23%  Similarity=0.364  Sum_probs=29.6

Q ss_pred             HcCCcEEEECC---cHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           10 IKGAKVLMVGA---GGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        10 L~~~~VlvvGa---GgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +.+++++|.|+   ||||.++++.|+..|. ++.++|.+
T Consensus         4 l~~k~vlVTGas~~~gIG~~~a~~l~~~G~-~V~~~~r~   41 (275)
T 2pd4_A            4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLN   41 (275)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESS
T ss_pred             CCCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence            56788999997   6999999999999996 68887743

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=86.58  E-value=0.57  Score=47.45  Aligned_cols=82  Identities=18%  Similarity=0.237  Sum_probs=51.8

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCC---CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEE
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGF---QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITA   86 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gv---g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~   86 (563)
                      +...+|.|||+|.+|+.++++|+..|+   ..++++|.+.-                 ..+++.++    +.  ++.+..
T Consensus        20 ~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~-----------------~~~~~~l~----~~--G~~~~~   76 (322)
T 2izz_A           20 FQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMD-----------------LATVSALR----KM--GVKLTP   76 (322)
T ss_dssp             --CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTT-----------------SHHHHHHH----HH--TCEEES
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCcc-----------------HHHHHHHH----Hc--CCEEeC
Confidence            345689999999999999999999995   56887763210                 02333332    21  233211


Q ss_pred             eccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHH
Q 008516           87 HHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL  123 (563)
Q Consensus        87 ~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~  123 (563)
                               ...+..+++|+||.|+-....+..+.++
T Consensus        77 ---------~~~e~~~~aDvVilav~~~~~~~vl~~l  104 (322)
T 2izz_A           77 ---------HNKETVQHSDVLFLAVKPHIIPFILDEI  104 (322)
T ss_dssp             ---------CHHHHHHHCSEEEECSCGGGHHHHHHHH
T ss_pred             ---------ChHHHhccCCEEEEEeCHHHHHHHHHHH
Confidence                     1245567899999999755555555544

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=86.53  E-value=3.7  Score=38.77  Aligned_cols=86  Identities=13%  Similarity=0.234  Sum_probs=57.2

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      ..++++|+|+|+-|.+++..|...|..-+-++|.|.-. .    . +.                      ++.|-.....
T Consensus        11 ~~k~v~IiGAGg~g~~v~~~l~~~~~~~vgfiDd~~~~-~----~-~~----------------------g~~Vlg~~~~   62 (220)
T 4ea9_A           11 AIGGVVIIGGGGHAKVVIESLRACGETVAAIVDADPTR-R----A-VL----------------------GVPVVGDDLA   62 (220)
T ss_dssp             CSSCEEEECCSHHHHHHHHHHHHTTCCEEEEECSCC--------C-BT----------------------TBCEEESGGG
T ss_pred             CCCCEEEEcCCHHHHHHHHHHHhCCCEEEEEEeCCccc-C----c-CC----------------------CeeEECCHHH
Confidence            44689999999999999999998898888899876321 1    1 11                      1222221111


Q ss_pred             CCCCcchHhhcc-cccEEEEccCCHHHHHHHHHHHHhcCCC
Q 008516           91 VKDPKFNVEFFK-QFNVVLNGLDNLDARRHVNRLCLAADVP  130 (563)
Q Consensus        91 i~~~~~~~~~~~-~~dvVi~alDn~~ar~~in~~c~~~~~p  130 (563)
                      +      .++.+ ..+-++.|..+.+.|+.+.+.+...+..
T Consensus        63 ~------~~~~~~~~~~v~iAIg~~~~R~~i~~~l~~~g~~   97 (220)
T 4ea9_A           63 L------PMLREQGLSRLFVAIGDNRLRQKLGRKARDHGFS   97 (220)
T ss_dssp             H------HHHHHTTCCEEEECCCCHHHHHHHHHHHHHTTCE
T ss_pred             H------HHhhcccccEEEEecCCHHHHHHHHHHHHhcCCC
Confidence            1      12222 2355778888899999999999887753

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=86.52  E-value=0.64  Score=48.04  Aligned_cols=39  Identities=26%  Similarity=0.262  Sum_probs=31.4

Q ss_pred             HHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516            7 LEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (563)
Q Consensus         7 q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~   46 (563)
                      .+.-+..+|+|||+|..|+.+|..|++.|+ +++|+|.+.
T Consensus        18 ~~~~~~~dV~IVGaG~aGl~~A~~La~~G~-~V~v~E~~~   56 (407)
T 3rp8_A           18 LYFQGHMKAIVIGAGIGGLSAAVALKQSGI-DCDVYEAVK   56 (407)
T ss_dssp             -----CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             ccCCCCCEEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence            445567899999999999999999999998 699999764

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=86.51  E-value=0.86  Score=44.63  Aligned_cols=58  Identities=17%  Similarity=0.193  Sum_probs=36.4

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHhcCccc-cceeeecccccccccccccCCCCCCCCcccCCCc
Q 008516          375 HAVATTNAIIAGLIVIEAIKVLLKDTDK-YRMTYCLEHITKKMLLMPVEPYEPNKSCYVCSET  436 (563)
Q Consensus       375 PAIATTnAiVAGl~vlE~~K~l~~~~~~-~r~~f~~~~~~~~~~~~p~~~~~pn~~C~vC~~~  436 (563)
                      +.++.+.++++++++.|++|+|.|..+. .+..+++....  . .. ...-+++|.|.+|+..
T Consensus       188 g~~~p~~~~~g~~~A~e~lk~l~g~~~~~~~~~~~d~~~~--~-~~-~~~~~~~p~C~~C~~~  246 (251)
T 1zud_1          188 GVVGPVVGVMGTLQALEAIKLLSGIETPAGELRLFDGKSS--Q-WR-SLALRRASGCPVCGGS  246 (251)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHHHHTCCCCCSEEEEEETTTT--E-EE-EEECCCCTTCTTTCC-
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhCCCCcCCcEEEEECCCC--E-EE-EEecCCCcCCCccCCC
Confidence            4567788999999999999999986432 22222222111  1 11 1123478999999853

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=86.36  E-value=2.6  Score=42.64  Aligned_cols=86  Identities=15%  Similarity=0.170  Sum_probs=51.5

Q ss_pred             CcEEEECCcHHHHHHHHHHHHh-CCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516           13 AKVLMVGAGGIGCELLKTLALS-GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~-Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i   91 (563)
                      .||.|||+|.+|...++.|... |+.-+.+.|.+                   ..+++.+++   ++.  +.+  +. + 
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~-------------------~~~~~~~a~---~~g--~~~--~~-~-   56 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPF-------------------IEGAQRLAE---ANG--AEA--VA-S-   56 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSS-------------------HHHHHHHHH---TTT--CEE--ES-S-
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCC-------------------HHHHHHHHH---HcC--Cce--eC-C-
Confidence            5899999999999999999886 43323355532                   233333322   222  222  11 1 


Q ss_pred             CCCcchHhhcc--cccEEEEccCCHHHHHHHHHHHHhcCCCEE
Q 008516           92 KDPKFNVEFFK--QFNVVLNGLDNLDARRHVNRLCLAADVPLV  132 (563)
Q Consensus        92 ~~~~~~~~~~~--~~dvVi~alDn~~ar~~in~~c~~~~~pli  132 (563)
                           -.+.+.  +.|+|+.|+.+..- ..+-..|..++++++
T Consensus        57 -----~~~~l~~~~~D~V~i~tp~~~h-~~~~~~al~~gk~v~   93 (344)
T 3euw_A           57 -----PDEVFARDDIDGIVIGSPTSTH-VDLITRAVERGIPAL   93 (344)
T ss_dssp             -----HHHHTTCSCCCEEEECSCGGGH-HHHHHHHHHTTCCEE
T ss_pred             -----HHHHhcCCCCCEEEEeCCchhh-HHHHHHHHHcCCcEE
Confidence                 134555  78999999876443 334445677777655

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=86.31  E-value=0.72  Score=46.79  Aligned_cols=36  Identities=33%  Similarity=0.547  Sum_probs=31.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIE   48 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve   48 (563)
                      ...|+|||+|.+|+.+|..|++.|. +++|+|.+.+.
T Consensus         6 ~~dVvVIG~Gi~Gls~A~~La~~G~-~V~vle~~~~~   41 (363)
T 1c0p_A            6 QKRVVVLGSGVIGLSSALILARKGY-SVHILARDLPE   41 (363)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSCTT
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCC-EEEEEeccCCC
Confidence            4689999999999999999999997 79999977654

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=86.23  E-value=0.71  Score=45.40  Aligned_cols=91  Identities=21%  Similarity=0.280  Sum_probs=56.1

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCC-eEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQ-DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg-~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i   91 (563)
                      ++|.|||+|.+|..+++.|+..|.. +++++|.+.                   .+.+.+    .+..  +..... .+ 
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~-------------------~~~~~~----~~~g--~~~~~~-~~-   54 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP-------------------ESISKA----VDLG--IIDEGT-TS-   54 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH-------------------HHHHHH----HHTT--SCSEEE-SC-
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH-------------------HHHHHH----HHCC--Cccccc-CC-
Confidence            4799999999999999999999963 677776331                   122222    1211  110010 11 


Q ss_pred             CCCcchHhhcc-cccEEEEccCCHHHHHHHHHHHHh--cCCCEEEec
Q 008516           92 KDPKFNVEFFK-QFNVVLNGLDNLDARRHVNRLCLA--ADVPLVESG  135 (563)
Q Consensus        92 ~~~~~~~~~~~-~~dvVi~alDn~~ar~~in~~c~~--~~~pli~~g  135 (563)
                           ..+.++ ++|+|+.|+-....+..+.++...  .+..+++.+
T Consensus        55 -----~~~~~~~~aDvVilavp~~~~~~v~~~l~~~l~~~~iv~~~~   96 (281)
T 2g5c_A           55 -----IAKVEDFSPDFVMLSSPVRTFREIAKKLSYILSEDATVTDQG   96 (281)
T ss_dssp             -----GGGGGGTCCSEEEECSCHHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred             -----HHHHhcCCCCEEEEcCCHHHHHHHHHHHHhhCCCCcEEEECC
Confidence                 124567 899999999876666666655332  345566644

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=86.15  E-value=1.4  Score=41.59  Aligned_cols=34  Identities=24%  Similarity=0.504  Sum_probs=28.5

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDT   46 (563)
Q Consensus        12 ~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~   46 (563)
                      +++|+|.| .|+||.++++.|+..|. ++.++|.+.
T Consensus         2 ~k~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~   36 (242)
T 1uay_A            2 ERSALVTGGASGLGRAAALALKARGY-RVVVLDLRR   36 (242)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSC
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEccCc
Confidence            56899998 68999999999999996 688877553

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=86.14  E-value=0.97  Score=44.54  Aligned_cols=34  Identities=26%  Similarity=0.592  Sum_probs=29.1

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      |++++++|.| .||||.++++.|+..|. ++.++|.
T Consensus         3 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r   37 (281)
T 3zv4_A            3 LTGEVALITGGASGLGRALVDRFVAEGA-RVAVLDK   37 (281)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeC
Confidence            5678889998 68999999999999997 6778764

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=86.13  E-value=1.5  Score=44.81  Aligned_cols=33  Identities=21%  Similarity=0.320  Sum_probs=25.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHh--CCCeEEEEeC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALS--GFQDIHIIDM   44 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~--Gvg~I~iiD~   44 (563)
                      ..||.|||+|.+|...++.|...  |+.-+.+.|.
T Consensus        13 ~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~   47 (354)
T 3q2i_A           13 KIRFALVGCGRIANNHFGALEKHADRAELIDVCDI   47 (354)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECS
T ss_pred             cceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcC
Confidence            45899999999999999999987  4443446553

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=86.12  E-value=1.9  Score=43.89  Aligned_cols=33  Identities=12%  Similarity=0.112  Sum_probs=25.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHh-CCCeEEEEeC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALS-GFQDIHIIDM   44 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~-Gvg~I~iiD~   44 (563)
                      ..||.|||+|.+|...++.|... |+.-+.+.|.
T Consensus         5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~   38 (354)
T 3db2_A            5 PVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSR   38 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECS
T ss_pred             cceEEEEccCHHHHHHHHHHHhCCCcEEEEEECC
Confidence            45899999999999999999876 5443445564

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=86.07  E-value=0.74  Score=48.02  Aligned_cols=37  Identities=27%  Similarity=0.507  Sum_probs=33.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIE   48 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve   48 (563)
                      ...|+|||+|..|+..|..|++.|..+++|+|.+.+-
T Consensus         6 ~~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~~   42 (438)
T 3dje_A            6 SSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPVP   42 (438)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCCC
Confidence            4579999999999999999999998789999987763

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=86.05  E-value=0.59  Score=48.45  Aligned_cols=98  Identities=19%  Similarity=0.293  Sum_probs=54.7

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      ++..||.|+| .|.+|.++++.|...+--++..+.               +..+.|+.-..+-    ..+...+ +    
T Consensus        14 M~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~---------------~~~~~g~~~~~~~----~~~~~~v-~----   69 (359)
T 1xyg_A           14 EKDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMT---------------ADRKAGQSMESVF----PHLRAQK-L----   69 (359)
T ss_dssp             -CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEB---------------CSTTTTSCHHHHC----GGGTTSC-C----
T ss_pred             ccCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEe---------------CchhcCCCHHHhC----chhcCcc-c----
Confidence            3457899999 799999999999876532343332               1123333221110    1111110 0    


Q ss_pred             cCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEec
Q 008516           89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG  135 (563)
Q Consensus        89 ~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~g  135 (563)
                      .++.-..  .+.|++.|+|+.|+.....+......  +.|+.+|+.+
T Consensus        70 ~dl~~~~--~~~~~~vDvVf~atp~~~s~~~a~~~--~aG~~VId~s  112 (359)
T 1xyg_A           70 PTLVSVK--DADFSTVDAVFCCLPHGTTQEIIKEL--PTALKIVDLS  112 (359)
T ss_dssp             CCCBCGG--GCCGGGCSEEEECCCTTTHHHHHHTS--CTTCEEEECS
T ss_pred             ccceecc--hhHhcCCCEEEEcCCchhHHHHHHHH--hCCCEEEECC
Confidence            1110011  23467899999999877777665544  6666666654

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=86.00  E-value=2.5  Score=37.45  Aligned_cols=40  Identities=10%  Similarity=0.170  Sum_probs=30.9

Q ss_pred             HHHHHH-cCCcEEEECC----cHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            5 RQLEAI-KGAKVLMVGA----GGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         5 ~~q~kL-~~~~VlvvGa----GgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +...-| .-.+|.|||+    |.+|..++++|...|+ ++.-++..
T Consensus         5 ~l~~ll~~p~~vaVvGas~~~g~~G~~~~~~l~~~G~-~v~~vnp~   49 (140)
T 1iuk_A            5 ELRAYLSQAKTIAVLGAHKDPSRPAHYVPRYLREQGY-RVLPVNPR   49 (140)
T ss_dssp             HHHHHHHHCCEEEEETCCSSTTSHHHHHHHHHHHTTC-EEEEECGG
T ss_pred             HHHHHHcCCCEEEEECCCCCCCChHHHHHHHHHHCCC-EEEEeCCC
Confidence            344445 5789999999    7899999999999998 45555443

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=85.97  E-value=2.1  Score=46.07  Aligned_cols=81  Identities=19%  Similarity=0.279  Sum_probs=50.1

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        12 ~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      +.+++|.| .||||.++++.|+..|..++.+++...-+                ..+++.+.+.+...  +.++..+..+
T Consensus       226 ~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~----------------~~~~~~l~~~l~~~--g~~v~~~~~D  287 (486)
T 2fr1_A          226 TGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPD----------------ADGAGELVAELEAL--GARTTVAACD  287 (486)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGG----------------STTHHHHHHHHHHT--TCEEEEEECC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCC----------------cHHHHHHHHHHHhc--CCEEEEEEeC
Confidence            46788887 89999999999999999889988754311                11233334444443  3466666666


Q ss_pred             CCCCcchHhhcc------cccEEEEc
Q 008516           91 VKDPKFNVEFFK------QFNVVLNG  110 (563)
Q Consensus        91 i~~~~~~~~~~~------~~dvVi~a  110 (563)
                      +++...-...++      ..|+||++
T Consensus       288 v~d~~~v~~~~~~i~~~g~ld~VIh~  313 (486)
T 2fr1_A          288 VTDRESVRELLGGIGDDVPLSAVFHA  313 (486)
T ss_dssp             TTCHHHHHHHHHTSCTTSCEEEEEEC
T ss_pred             CCCHHHHHHHHHHHHhcCCCcEEEEC
Confidence            654322223333      34777764

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=85.88  E-value=0.57  Score=50.04  Aligned_cols=39  Identities=21%  Similarity=0.412  Sum_probs=36.1

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCC--CeEEEEeCCcc
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGF--QDIHIIDMDTI   47 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gv--g~I~iiD~D~V   47 (563)
                      +|.+.||++.|+|+-|.-+++.|+..|+  ++|.++|..-+
T Consensus       216 ~l~d~riV~~GAGaAGigia~ll~~~G~~~~~i~l~D~~Gl  256 (487)
T 3nv9_A          216 DIHECRMVFIGAGSSNTTCLRLIVTAGADPKKIVMFDSKGS  256 (487)
T ss_dssp             CGGGCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEETTEE
T ss_pred             ChhhcEEEEECCCHHHHHHHHHHHHcCCCcccEEEEecccc
Confidence            5889999999999999999999999999  89999997754

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=85.86  E-value=0.7  Score=45.27  Aligned_cols=35  Identities=14%  Similarity=0.161  Sum_probs=28.3

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +..++|+|.| .||||.++++.|+..|. ++.++|.+
T Consensus         3 ~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~   38 (281)
T 3m1a_A            3 ESAKVWLVTGASSGFGRAIAEAAVAAGD-TVIGTARR   38 (281)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            3567788887 58999999999999996 67777754

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=85.80  E-value=2  Score=44.02  Aligned_cols=94  Identities=15%  Similarity=0.215  Sum_probs=57.0

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        12 ~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      ..||.|+| .|.+|.++++.|...++..+.++=   +          ....+.|+.-+         ++ +..+....  
T Consensus         3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~---i----------~s~~~~G~~~~---------~~-~~~i~~~~--   57 (336)
T 2r00_A            3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFL---L----------ASERSEGKTYR---------FN-GKTVRVQN--   57 (336)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEE---E----------ECTTTTTCEEE---------ET-TEEEEEEE--
T ss_pred             ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEE---E----------ECCCCCCCcee---------ec-CceeEEec--
Confidence            35899999 899999999999988655444431   0          00112333110         11 11222211  


Q ss_pred             CCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEecc
Q 008516           91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGT  136 (563)
Q Consensus        91 i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt  136 (563)
                      .     +.+.|++.|+|+.|+....++.+... ..+.|..+|+.+.
T Consensus        58 ~-----~~~~~~~vDvVf~a~g~~~s~~~a~~-~~~~G~~vId~s~   97 (336)
T 2r00_A           58 V-----EEFDWSQVHIALFSAGGELSAKWAPI-AAEAGVVVIDNTS   97 (336)
T ss_dssp             G-----GGCCGGGCSEEEECSCHHHHHHHHHH-HHHTTCEEEECSS
T ss_pred             C-----ChHHhcCCCEEEECCCchHHHHHHHH-HHHcCCEEEEcCC
Confidence            1     12245789999999998777776654 4567777887654

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=85.71  E-value=2.9  Score=40.37  Aligned_cols=34  Identities=18%  Similarity=0.254  Sum_probs=30.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~   46 (563)
                      ..+|+|||+|..|..++..|++.|. +++|+|...
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~   35 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRARK-NILLVDAGE   35 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTC-CEEEEECCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence            3589999999999999999999997 799999653

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=85.66  E-value=2.1  Score=43.12  Aligned_cols=33  Identities=21%  Similarity=0.269  Sum_probs=25.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHh-CCCeEEEEeC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALS-GFQDIHIIDM   44 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~-Gvg~I~iiD~   44 (563)
                      ..||.|||+|.+|...++.|... |+.-+.+.|.
T Consensus         3 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~   36 (331)
T 4hkt_A            3 TVRFGLLGAGRIGKVHAKAVSGNADARLVAVADA   36 (331)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECS
T ss_pred             ceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECC
Confidence            35899999999999999999986 4433345654

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=85.62  E-value=2  Score=45.51  Aligned_cols=99  Identities=10%  Similarity=0.061  Sum_probs=58.0

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHh-CCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC-CCceEEE
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALS-GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR-PQMSITA   86 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~-Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~n-p~v~I~~   86 (563)
                      .++..||.|||+|.+|...+..|... |+.-+.+.|                   ....|++.+++.+.+.. |.+++  
T Consensus        17 ~~~~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d-------------------~~~~~~~~~a~~~~~~g~~~~~~--   75 (444)
T 2ixa_A           17 NPKKVRIAFIAVGLRGQTHVENMARRDDVEIVAFAD-------------------PDPYMVGRAQEILKKNGKKPAKV--   75 (444)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEC-------------------SCHHHHHHHHHHHHHTTCCCCEE--
T ss_pred             CCCCceEEEEecCHHHHHHHHHHHhCCCcEEEEEEe-------------------CCHHHHHHHHHHHHhcCCCCCce--
Confidence            44567999999999999999988864 332233444                   23456666666665443 33332  


Q ss_pred             eccCCCCCcchHhhcc--cccEEEEccCCHHHHHHHHHHHHhcCCCEE
Q 008516           87 HHANVKDPKFNVEFFK--QFNVVLNGLDNLDARRHVNRLCLAADVPLV  132 (563)
Q Consensus        87 ~~~~i~~~~~~~~~~~--~~dvVi~alDn~~ar~~in~~c~~~~~pli  132 (563)
                      +...  +.. -.+++.  +.|+|+.|+.+. ....+...|.+++++++
T Consensus        76 ~~~~--~~~-~~~ll~~~~vD~V~i~tp~~-~h~~~~~~al~aGkhV~  119 (444)
T 2ixa_A           76 FGNG--NDD-YKNMLKDKNIDAVFVSSPWE-WHHEHGVAAMKAGKIVG  119 (444)
T ss_dssp             ECSS--TTT-HHHHTTCTTCCEEEECCCGG-GHHHHHHHHHHTTCEEE
T ss_pred             eccC--CCC-HHHHhcCCCCCEEEEcCCcH-HHHHHHHHHHHCCCeEE
Confidence            2210  011 134554  589999988754 34444556667776544

>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A*

Probab=85.57  E-value=1.8  Score=47.46  Aligned_cols=73  Identities=19%  Similarity=0.312  Sum_probs=51.3

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHH----hCC------CeEEEEeCCccCcc---cCcc--ccCCCCC-CCCchHHHHHH
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLAL----SGF------QDIHIIDMDTIEVS---NLNR--QFLFRQS-HVGQSKAKVAR   72 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal----~Gv------g~I~iiD~D~Ve~s---NLnR--qfLf~~~-diGk~Ka~va~   72 (563)
                      +|.+.||++.|+|+-|+.+++.|+.    .|+      ++|.++|..-+=..   +|+.  +.|-+.. +.|     .+.
T Consensus       317 ~l~d~riv~~GAGaAgigia~ll~~~m~~~Gl~~eeA~~~i~~vD~~Gli~~~r~~l~~~k~~~A~~~~~~~-----~L~  391 (605)
T 1o0s_A          317 LVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRKEMNPRHVQFAKDMPETT-----SIL  391 (605)
T ss_dssp             CGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTCSSCCGGGTTTCBSSCCCC-----CHH
T ss_pred             ChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhhhhCeEEEEECCCceeCCCCCchHHHHHHHhhcCCCC-----CHH
Confidence            6889999999999999999999998    786      58999998655332   3432  1222221 222     377


Q ss_pred             HHHHhhCCCceEEE
Q 008516           73 DAVLKFRPQMSITA   86 (563)
Q Consensus        73 ~~l~~~np~v~I~~   86 (563)
                      +.++...|++-|-.
T Consensus       392 eav~~vkpdVlIG~  405 (605)
T 1o0s_A          392 EVIRAARPGALIGA  405 (605)
T ss_dssp             HHHHHHCCSEEEEC
T ss_pred             HHHhhcCCCEEEEe
Confidence            77777777776644

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=85.54  E-value=0.93  Score=46.72  Aligned_cols=32  Identities=25%  Similarity=0.430  Sum_probs=29.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEe
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      ..+|+|+|+|++|...+..+...|.+++..+|
T Consensus       183 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~  214 (370)
T 4ej6_A          183 GSTVAILGGGVIGLLTVQLARLAGATTVILST  214 (370)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEC
Confidence            57899999999999999999999998888886

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=85.54  E-value=0.75  Score=46.68  Aligned_cols=33  Identities=18%  Similarity=0.325  Sum_probs=28.4

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ...||.|+|+|.+|+.++..|+..|. +++++|.
T Consensus        13 ~~~kI~iIG~G~mG~ala~~L~~~G~-~V~~~~r   45 (335)
T 1z82_A           13 MEMRFFVLGAGSWGTVFAQMLHENGE-EVILWAR   45 (335)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             cCCcEEEECcCHHHHHHHHHHHhCCC-eEEEEeC
Confidence            46799999999999999999999995 6777763

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=85.46  E-value=0.8  Score=47.47  Aligned_cols=36  Identities=19%  Similarity=0.355  Sum_probs=31.4

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~   46 (563)
                      .+.+|+|||+|..|..++..|++.|+.+++|+|...
T Consensus         3 ~~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~   38 (410)
T 3c96_A            3 EPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSS   38 (410)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence            356899999999999999999999996699998654

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=85.40  E-value=0.69  Score=48.09  Aligned_cols=34  Identities=26%  Similarity=0.456  Sum_probs=30.7

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      |.+++|.|+|+|.+|..+++.|...|. ++.+.|.
T Consensus       171 L~GktV~V~G~G~VG~~~A~~L~~~Ga-kVvv~D~  204 (364)
T 1leh_A          171 LEGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDV  204 (364)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCcCEEEEECchHHHHHHHHHHHHCCC-EEEEEcC
Confidence            678999999999999999999999998 5778874

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=85.38  E-value=2.3  Score=45.36  Aligned_cols=94  Identities=19%  Similarity=0.262  Sum_probs=59.8

Q ss_pred             CCcEEEECCcHH-HHHHHHHHHH--hCC--CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHH---HH-HhhCCCc
Q 008516           12 GAKVLMVGAGGI-GCELLKTLAL--SGF--QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARD---AV-LKFRPQM   82 (563)
Q Consensus        12 ~~~VlvvGaGgi-G~ellknLal--~Gv--g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~---~l-~~~np~v   82 (563)
                      ..||.|||+|++ |..++..|+.  .++  .+|.++|.|.                 |+.|++.+.+   .+ .......
T Consensus         7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~-----------------~~e~~~~~~~~~~~~~~~~~~~~   69 (450)
T 1s6y_A            7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPE-----------------GKEKLEIVGALAKRMVEKAGVPI   69 (450)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGG-----------------GHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCC-----------------ChHHHHHHHHHHHHHHhhcCCCc
Confidence            468999999999 8888888887  565  5699988322                 2245444222   22 2445556


Q ss_pred             eEEEeccCCCCCcchHhhcccccEEEEccCC--HHHHHHHHHHHHhcCC
Q 008516           83 SITAHHANVKDPKFNVEFFKQFNVVLNGLDN--LDARRHVNRLCLAADV  129 (563)
Q Consensus        83 ~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn--~~ar~~in~~c~~~~~  129 (563)
                      +|.+..+       -.+-++++|+||.+...  .+.|.....+..+++.
T Consensus        70 ~i~~t~D-------~~eal~gAD~VVitagv~~~~~~~rd~~ip~~~g~  111 (450)
T 1s6y_A           70 EIHLTLD-------RRRALDGADFVTTQFRVGGLEARAKDERIPLKYGV  111 (450)
T ss_dssp             EEEEESC-------HHHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTC
T ss_pred             EEEEeCC-------HHHHhCCCCEEEEcCCCCCCcchhhhhhhhhhcCc
Confidence            7766321       12457899999998764  3345554555556665

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=85.25  E-value=0.8  Score=46.58  Aligned_cols=36  Identities=22%  Similarity=0.493  Sum_probs=32.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIE   48 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve   48 (563)
                      ..+|+|||+|..|+.+|..|++.|. +++|+|.+.+.
T Consensus         5 ~~dVvIIGgGi~Gl~~A~~La~~G~-~V~lle~~~~~   40 (382)
T 1y56_B            5 KSEIVVIGGGIVGVTIAHELAKRGE-EVTVIEKRFIG   40 (382)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSTT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCCC
Confidence            4689999999999999999999998 59999987654

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=85.20  E-value=0.63  Score=47.68  Aligned_cols=35  Identities=26%  Similarity=0.397  Sum_probs=30.8

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .|.+++|.|||+|.+|..+++.|...|. ++.++|.
T Consensus       143 ~l~g~~vgIIG~G~iG~~vA~~l~~~G~-~V~~~d~  177 (333)
T 2d0i_A          143 SLYGKKVGILGMGAIGKAIARRLIPFGV-KLYYWSR  177 (333)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECS
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEECC
Confidence            5788999999999999999999998886 6777763

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=85.18  E-value=0.74  Score=46.35  Aligned_cols=36  Identities=19%  Similarity=0.314  Sum_probs=31.5

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .|.+++|.|||.|.+|..+++.|...|. ++..+|..
T Consensus       119 ~l~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~  154 (290)
T 3gvx_A          119 LLYGKALGILGYGGIGRRVAHLAKAFGM-RVIAYTRS  154 (290)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred             eeecchheeeccCchhHHHHHHHHhhCc-EEEEEecc
Confidence            3778999999999999999999999998 67777743

>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*

Probab=85.17  E-value=1.5  Score=45.54  Aligned_cols=96  Identities=17%  Similarity=0.320  Sum_probs=60.2

Q ss_pred             CCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHH--------HHHHhhCCCc
Q 008516           12 GAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVAR--------DAVLKFRPQM   82 (563)
Q Consensus        12 ~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~--------~~l~~~np~v   82 (563)
                      ..||.|||+ |-+|.|+++.|...-.-+|..+               ...+..|+.-+++..        +...    +.
T Consensus         7 ~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l---------------~S~~saGk~~~~~~p~~~~~~~~~~~~----~~   67 (359)
T 4dpk_A            7 TLKAAILGATGLVGIEYVRMLSNHPYIKPAYL---------------AGKGSVGKPYGEVVRWQTVGQVPKEIA----DM   67 (359)
T ss_dssp             CEEEEETTTTSTTHHHHHHHHTTCSSEEEEEE---------------EESTTTTSBHHHHCCCCSSSCCCHHHH----TC
T ss_pred             CCeEEEECCCCHHHHHHHHHHHhCCCceEEEE---------------ECchhcCCChhHhcccccccccccccc----cc
Confidence            468999995 8899999998876544344443               344556765443310        0000    11


Q ss_pred             eEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEecc
Q 008516           83 SITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGT  136 (563)
Q Consensus        83 ~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt  136 (563)
                      .++.         .+.+.+.+.|+|+.|+....++.+.... ...+..+|+.+.
T Consensus        68 ~v~~---------~~~~~~~~vDvvf~a~p~~~s~~~a~~~-~~~G~~vIDlSa  111 (359)
T 4dpk_A           68 EIKP---------TDPKLMDDVDIIFSPLPQGAAGPVEEQF-AKEGFPVISNSP  111 (359)
T ss_dssp             BCEE---------CCGGGCTTCCEEEECCCTTTHHHHHHHH-HHTTCEEEECSS
T ss_pred             eEEe---------CCHHHhcCCCEEEECCChHHHHHHHHHH-HHCCCEEEEcCC
Confidence            2211         1223357999999999988888766554 567888888764

>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*

Probab=85.17  E-value=1.5  Score=45.54  Aligned_cols=96  Identities=17%  Similarity=0.320  Sum_probs=60.2

Q ss_pred             CCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHH--------HHHHhhCCCc
Q 008516           12 GAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVAR--------DAVLKFRPQM   82 (563)
Q Consensus        12 ~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~--------~~l~~~np~v   82 (563)
                      ..||.|||+ |-+|.|+++.|...-.-+|..+               ...+..|+.-+++..        +...    +.
T Consensus         7 ~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l---------------~S~~saGk~~~~~~p~~~~~~~~~~~~----~~   67 (359)
T 4dpl_A            7 TLKAAILGATGLVGIEYVRMLSNHPYIKPAYL---------------AGKGSVGKPYGEVVRWQTVGQVPKEIA----DM   67 (359)
T ss_dssp             CEEEEETTTTSTTHHHHHHHHTTCSSEEEEEE---------------EESTTTTSBHHHHCCCCSSSCCCHHHH----TC
T ss_pred             CCeEEEECCCCHHHHHHHHHHHhCCCceEEEE---------------ECchhcCCChhHhcccccccccccccc----cc
Confidence            468999995 8899999998876544344443               344556765443310        0000    11


Q ss_pred             eEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEecc
Q 008516           83 SITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGT  136 (563)
Q Consensus        83 ~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt  136 (563)
                      .++.         .+.+.+.+.|+|+.|+....++.+.... ...+..+|+.+.
T Consensus        68 ~v~~---------~~~~~~~~vDvvf~a~p~~~s~~~a~~~-~~~G~~vIDlSa  111 (359)
T 4dpl_A           68 EIKP---------TDPKLMDDVDIIFSPLPQGAAGPVEEQF-AKEGFPVISNSP  111 (359)
T ss_dssp             BCEE---------CCGGGCTTCCEEEECCCTTTHHHHHHHH-HHTTCEEEECSS
T ss_pred             eEEe---------CCHHHhcCCCEEEECCChHHHHHHHHHH-HHCCCEEEEcCC
Confidence            2211         1223357999999999988888766554 567888888764

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=85.15  E-value=0.69  Score=45.83  Aligned_cols=32  Identities=22%  Similarity=0.425  Sum_probs=28.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ..+|.|||+|.+|..+++.|+..|. +++++|.
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~   35 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKEGV-TVYAFDL   35 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-eEEEEeC
Confidence            4689999999999999999999997 6777763

>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}

Probab=85.10  E-value=0.98  Score=47.24  Aligned_cols=99  Identities=20%  Similarity=0.262  Sum_probs=60.9

Q ss_pred             HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHH--------HHHhhCC
Q 008516           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARD--------AVLKFRP   80 (563)
Q Consensus        10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~--------~l~~~np   80 (563)
                      ++..||.|||+ |.+|.|+++.|...-.-+|..+-              ...+..|+.-+++..-        ...    
T Consensus        17 M~~~kVaIvGAtG~vG~ell~lL~~hp~~el~~l~--------------aS~~saGk~~~~~~~~~~~~~~p~~~~----   78 (381)
T 3hsk_A           17 MSVKKAGVLGATGSVGQRFILLLSKHPEFEIHALG--------------ASSRSAGKKYKDAASWKQTETLPETEQ----   78 (381)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEE--------------ECTTTTTSBHHHHCCCCCSSCCCHHHH----
T ss_pred             CCccEEEEECCCChHHHHHHHHHHcCCCceEEEee--------------ccccccCCCHHHhcccccccccccccc----
Confidence            55678999995 88899999988775544443221              1445677764433100        000    


Q ss_pred             CceEEEeccCCCCCcchHh-hcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEecc
Q 008516           81 QMSITAHHANVKDPKFNVE-FFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGT  136 (563)
Q Consensus        81 ~v~I~~~~~~i~~~~~~~~-~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt  136 (563)
                      +..++.    .     +.+ .++++|+|+.|+....++.+..+. ...+..+||.++
T Consensus        79 ~~~v~~----~-----~~~~~~~~~Dvvf~alp~~~s~~~~~~~-~~~G~~VIDlSa  125 (381)
T 3hsk_A           79 DIVVQE----C-----KPEGNFLECDVVFSGLDADVAGDIEKSF-VEAGLAVVSNAK  125 (381)
T ss_dssp             TCBCEE----S-----SSCTTGGGCSEEEECCCHHHHHHHHHHH-HHTTCEEEECCS
T ss_pred             cceEEe----C-----chhhhcccCCEEEECCChhHHHHHHHHH-HhCCCEEEEcCC
Confidence            111111    1     111 368999999999988888776554 677888888764

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=85.06  E-value=1.2  Score=43.20  Aligned_cols=37  Identities=24%  Similarity=0.348  Sum_probs=29.6

Q ss_pred             HHHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         8 ~kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ..+++++++|.| .||||.++++.|+..|. ++.++|.+
T Consensus        17 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~   54 (253)
T 2nm0_A           17 RSHMSRSVLVTGGNRGIGLAIARAFADAGD-KVAITYRS   54 (253)
T ss_dssp             ---CCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            467788899998 68999999999999996 67887764

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=85.05  E-value=0.56  Score=47.35  Aligned_cols=35  Identities=34%  Similarity=0.491  Sum_probs=31.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~   46 (563)
                      ..+|+|||+|..|..+|..|+..|..+++|+|.+.
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~   38 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT   38 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC
Confidence            45799999999999999999999975799999764

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=85.00  E-value=0.81  Score=46.77  Aligned_cols=36  Identities=22%  Similarity=0.451  Sum_probs=31.5

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .|.+++|.|||.|.+|..+++.|...|+ ++..+|..
T Consensus       134 ~l~gktvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~  169 (324)
T 3evt_A          134 TLTGQQLLIYGTGQIGQSLAAKASALGM-HVIGVNTT  169 (324)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             cccCCeEEEECcCHHHHHHHHHHHhCCC-EEEEECCC
Confidence            4778999999999999999999999997 67777743

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=84.92  E-value=3.1  Score=41.37  Aligned_cols=78  Identities=17%  Similarity=0.134  Sum_probs=47.0

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        12 ~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      +++|+|.| +|.||+.+++.|...|. ++++++.+.   +++.             +...+ ..+. .  .-+++.+..+
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~-~V~~~~r~~---~~~~-------------~~~~~-~~~~-~--~~~~~~~~~D   67 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGY-AVNTTVRDP---DNQK-------------KVSHL-LELQ-E--LGDLKIFRAD   67 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTC-EEEEEESCT---TCTT-------------TTHHH-HHHG-G--GSCEEEEECC
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCC-EEEEEEcCc---chhh-------------hHHHH-HhcC-C--CCcEEEEecC
Confidence            67899999 79999999999999996 455544321   1110             00101 1111 1  1245556666


Q ss_pred             CCCCcchHhhcccccEEEEc
Q 008516           91 VKDPKFNVEFFKQFNVVLNG  110 (563)
Q Consensus        91 i~~~~~~~~~~~~~dvVi~a  110 (563)
                      +.+...-.+.++++|+||.+
T Consensus        68 l~d~~~~~~~~~~~D~Vih~   87 (338)
T 2rh8_A           68 LTDELSFEAPIAGCDFVFHV   87 (338)
T ss_dssp             TTTSSSSHHHHTTCSEEEEE
T ss_pred             CCChHHHHHHHcCCCEEEEe
Confidence            75543334567889999974

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=84.91  E-value=0.76  Score=46.61  Aligned_cols=34  Identities=24%  Similarity=0.376  Sum_probs=29.8

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEe
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      .|.+++|.|||+|.+|..+++.|...|. ++..+|
T Consensus       139 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d  172 (313)
T 2ekl_A          139 ELAGKTIGIVGFGRIGTKVGIIANAMGM-KVLAYD  172 (313)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEEC
T ss_pred             CCCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEC
Confidence            3678899999999999999999999996 577766

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=84.91  E-value=0.75  Score=47.06  Aligned_cols=35  Identities=20%  Similarity=0.264  Sum_probs=30.5

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .|.+++|.|||+|.+|..+++.|...|. ++.++|.
T Consensus       147 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~  181 (334)
T 2dbq_A          147 DVYGKTIGIIGLGRIGQAIAKRAKGFNM-RILYYSR  181 (334)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCCCCEEEEEccCHHHHHHHHHHHhCCC-EEEEECC
Confidence            4678899999999999999999999986 6777763

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=84.88  E-value=0.72  Score=48.49  Aligned_cols=36  Identities=25%  Similarity=0.350  Sum_probs=31.9

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~   46 (563)
                      +...+|+|+|+|++|..+++.+..+|. +++++|...
T Consensus       170 l~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~v~D~~~  205 (401)
T 1x13_A          170 VPPAKVMVIGAGVAGLAAIGAANSLGA-IVRAFDTRP  205 (401)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCG
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCH
Confidence            457899999999999999999999997 799988543

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=84.85  E-value=0.8  Score=45.90  Aligned_cols=32  Identities=19%  Similarity=0.381  Sum_probs=28.3

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .+|.|||+|.+|+.+++.|+..|. +++++|.+
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~-~V~~~~~~   62 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGH-TVTVWNRT   62 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            689999999999999999999997 58887743

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=84.81  E-value=0.68  Score=47.26  Aligned_cols=35  Identities=20%  Similarity=0.322  Sum_probs=30.8

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .|.+++|.|||+|.+|..+++.|...|. +++++|.
T Consensus       152 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~  186 (330)
T 2gcg_A          152 GLTQSTVGIIGLGRIGQAIARRLKPFGV-QRFLYTG  186 (330)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHGGGTC-CEEEEES
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECC
Confidence            3678899999999999999999999997 5888874

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=84.69  E-value=0.79  Score=46.05  Aligned_cols=31  Identities=29%  Similarity=0.442  Sum_probs=27.7

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .||.|+|+|.+|+.++..|+..|. +++++|.
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~~g~-~V~~~~r   31 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVDNGN-EVRIWGT   31 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCC-EEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEEc
Confidence            379999999999999999999996 7888875

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=84.68  E-value=0.88  Score=45.96  Aligned_cols=31  Identities=39%  Similarity=0.727  Sum_probs=25.9

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEE
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHII   42 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~ii   42 (563)
                      ...||.|+|+|++|+.++..|+..|. .++++
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G~-~V~l~   48 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAGH-EVILI   48 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTTC-EEEEE
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCCC-eEEEE
Confidence            46789999999999999999999996 56664

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=84.65  E-value=1.1  Score=45.36  Aligned_cols=24  Identities=13%  Similarity=0.051  Sum_probs=21.4

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHh
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALS   34 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~   34 (563)
                      +..||.|||+|.+|...++.|...
T Consensus         4 ~~~~igiiG~G~~g~~~~~~l~~~   27 (330)
T 3e9m_A            4 DKIRYGIMSTAQIVPRFVAGLRES   27 (330)
T ss_dssp             CCEEEEECSCCTTHHHHHHHHHHS
T ss_pred             CeEEEEEECchHHHHHHHHHHHhC
Confidence            346899999999999999999886

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=84.55  E-value=1.2  Score=41.08  Aligned_cols=29  Identities=28%  Similarity=0.550  Sum_probs=24.2

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        13 ~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ++++|.| .|+||.++++.|+..   ++.++|.
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~---~V~~~~r   30 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH---DLLLSGR   30 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS---EEEEECS
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC---CEEEEEC
Confidence            3688998 589999999999877   7888764

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=84.54  E-value=0.86  Score=46.66  Aligned_cols=35  Identities=23%  Similarity=0.378  Sum_probs=30.4

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .|.+++|.|||.|.+|..+++.|...|+ ++..+|.
T Consensus       143 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~  177 (333)
T 1j4a_A          143 EVRDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDI  177 (333)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHCCC-EEEEECC
Confidence            4778899999999999999999999887 5777663

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=84.52  E-value=1.5  Score=44.24  Aligned_cols=36  Identities=8%  Similarity=0.161  Sum_probs=26.7

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCC-CeEEEEeCCc
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMDT   46 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gv-g~I~iiD~D~   46 (563)
                      +..||.|||+|.+|...++.|...+- .-+.+.|.+.
T Consensus         4 ~~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~   40 (329)
T 3evn_A            4 SKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTL   40 (329)
T ss_dssp             -CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCS
T ss_pred             CceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCH
Confidence            45689999999999999999988753 2334556543

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=84.42  E-value=0.6  Score=47.27  Aligned_cols=36  Identities=14%  Similarity=0.331  Sum_probs=31.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIE   48 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve   48 (563)
                      +..|+|||+|.+|+.+|..|++.|. +++|+|.+..-
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~~G~-~V~vle~~~~~   37 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATRAGL-NVLMTDAHMPP   37 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHHTTC-CEEEECSSCSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCC
Confidence            4579999999999999999999997 69999977553

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=84.38  E-value=2.1  Score=45.48  Aligned_cols=36  Identities=25%  Similarity=0.275  Sum_probs=31.8

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~   46 (563)
                      +++++|+|+|.|+.|-.+++.|...|. ++++.|...
T Consensus         7 ~~~k~v~viG~G~sG~s~A~~l~~~G~-~V~~~D~~~   42 (451)
T 3lk7_A            7 FENKKVLVLGLARSGEAAARLLAKLGA-IVTVNDGKP   42 (451)
T ss_dssp             TTTCEEEEECCTTTHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEeCCc
Confidence            568899999999999999999999996 689988643

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=84.37  E-value=1.2  Score=45.05  Aligned_cols=34  Identities=15%  Similarity=0.394  Sum_probs=30.4

Q ss_pred             HcCCcEEEECCcH-HHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVGAGG-IGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvGaGg-iG~ellknLal~Gvg~I~iiD~   44 (563)
                      |.+++++|||.|+ +|..+++.|...|. .+++.+.
T Consensus       163 l~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~~~  197 (300)
T 4a26_A          163 MAGKRAVVLGRSNIVGAPVAALLMKENA-TVTIVHS  197 (300)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECT
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeC
Confidence            6889999999998 69999999999998 5888864

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=84.34  E-value=0.84  Score=46.38  Aligned_cols=36  Identities=19%  Similarity=0.312  Sum_probs=31.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIE   48 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve   48 (563)
                      ...|+|||+|..|+.+|..|++.|. +++|+|.+.+.
T Consensus        17 ~~dvvIIGgG~~Gl~~A~~La~~G~-~V~llE~~~~~   52 (382)
T 1ryi_A           17 HYEAVVIGGGIIGSAIAYYLAKENK-NTALFESGTMG   52 (382)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSTT
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCC-cEEEEeCCCCC
Confidence            4579999999999999999999998 69999976543

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=84.28  E-value=0.82  Score=46.53  Aligned_cols=36  Identities=22%  Similarity=0.355  Sum_probs=31.0

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .|.+++|.|||+|.+|..+++.|...|+ ++...|.+
T Consensus       136 ~l~g~tvGIiG~G~IG~~vA~~l~~~G~-~V~~~dr~  171 (315)
T 3pp8_A          136 TREEFSVGIMGAGVLGAKVAESLQAWGF-PLRCWSRS  171 (315)
T ss_dssp             CSTTCCEEEECCSHHHHHHHHHHHTTTC-CEEEEESS
T ss_pred             CcCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            3678999999999999999999998887 57777743

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=84.25  E-value=0.77  Score=45.39  Aligned_cols=31  Identities=29%  Similarity=0.529  Sum_probs=27.1

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .+|.|||+|.+|..+++.|+..|. +++++|.
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~-~V~~~~~   31 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNLMKHGY-PLIIYDV   31 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHTTC-CEEEECS
T ss_pred             CeEEEEeccHHHHHHHHHHHHCCC-EEEEEeC
Confidence            379999999999999999999997 5777763

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=84.13  E-value=0.71  Score=50.23  Aligned_cols=35  Identities=26%  Similarity=0.409  Sum_probs=26.9

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .+.+++++|+|+||+|..+++.|+..|. ++++++.
T Consensus       361 ~l~~k~vlV~GaGGig~aia~~L~~~G~-~V~i~~R  395 (523)
T 2o7s_A          361 PLASKTVVVIGAGGAGKALAYGAKEKGA-KVVIANR  395 (523)
T ss_dssp             -----CEEEECCSHHHHHHHHHHHHHCC--CEEEES
T ss_pred             ccCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence            4677899999999999999999999998 7888763

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=84.09  E-value=2.3  Score=43.52  Aligned_cols=86  Identities=15%  Similarity=0.308  Sum_probs=53.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhC---------CCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCc
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSG---------FQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQM   82 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~G---------vg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v   82 (563)
                      ..||.|+|+|.+|..+++.|....         +.-..+.|.+.      .|     ..+++.                .
T Consensus         3 ~irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~------~~-----~~~~~~----------------~   55 (332)
T 2ejw_A            3 ALKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDP------RK-----PRAIPQ----------------E   55 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCT------TS-----CCSSCG----------------G
T ss_pred             eeEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCH------HH-----hhccCc----------------c
Confidence            458999999999999999998753         22234555442      11     111110                0


Q ss_pred             eEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEe
Q 008516           83 SITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVES  134 (563)
Q Consensus        83 ~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~  134 (563)
                      .   ...++      ++++ ..|+|+.++.+.......-..+.++|+.++.+
T Consensus        56 ~---~~~d~------~~ll-~iDvVve~t~~~~~a~~~~~~AL~aGKhVVta   97 (332)
T 2ejw_A           56 L---LRAEP------FDLL-EADLVVEAMGGVEAPLRLVLPALEAGIPLITA   97 (332)
T ss_dssp             G---EESSC------CCCT-TCSEEEECCCCSHHHHHHHHHHHHTTCCEEEC
T ss_pred             c---ccCCH------HHHh-CCCEEEECCCCcHHHHHHHHHHHHcCCeEEEC
Confidence            0   11122      1334 89999999988754444455678899988774

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=84.06  E-value=0.82  Score=46.50  Aligned_cols=36  Identities=28%  Similarity=0.335  Sum_probs=31.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIE   48 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve   48 (563)
                      ...|+|||+|..|+.+|..|++.|. +++|+|.+.+-
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~~G~-~V~vie~~~~~   38 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAKQGV-KTLLVDAFDPP   38 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSCSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCCCC
Confidence            3579999999999999999999997 69999977653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	563
d1yovb1	426	c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [T	8e-57
d1yovb1	426	c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [T	9e-28
d1yova1	529	c.111.1.2 (A:6-534) Amyloid beta precursor protein	1e-54
d1jw9b_	247	c.111.1.1 (B:) Molybdenum cofactor biosynthesis pr	8e-23

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} Length = 426

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  194 bits (494), Expect = 8e-57
 Identities = 84/200 (42%), Positives = 122/200 (61%), Gaps = 16/200 (8%)

Query: 4   ERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHV 63
           E     +   KVL++GAGG+GCELLK LALSGF+ IH+IDMDTI+VSNLNRQFLFR   +
Sbjct: 29  ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI 88

Query: 64  GQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL 123
           G+ KA+VA + +    P  ++  H   ++D  FN  F++QF++++ GLD++ ARR +N +
Sbjct: 89  GRPKAEVAAEFLNDRVPNCNVVPHFNKIQD--FNDTFYRQFHIIVCGLDSIIARRWINGM 146

Query: 124 CL------------AADVPLVESGTTGFLGQVTVHVKGKTECYECQPK--PAPKTYPVCT 169
            +            ++ VPL++ GT GF G   V + G T C EC  +  P    +P+CT
Sbjct: 147 LISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCT 206

Query: 170 ITSTPSKFVHCIVWAKDLLF 189
           I S P    HCI + + L +
Sbjct: 207 IASMPRLPEHCIEYVRMLQW 226

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} Length = 426

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (284), Expect = 9e-28
 Identities = 35/199 (17%), Positives = 77/199 (38%), Gaps = 13/199 (6%)

Query: 320 LFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVAT 379
           L + K +     +  D DD   ++++   +  RA+ + I   +    +G+   I+ AVA+
Sbjct: 224 LQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVAS 283

Query: 380 TNAIIAGLIVIEAIKVLLK--DTDKYRMTYCLEHITKKMLLMPVEPYEPNKSCYVCSETP 437
           TNA+IA +   E  K+           + +         L       E  ++C  CS+ P
Sbjct: 284 TNAVIAAVCATEVFKIATSAYIPLNNYLVF----NDVDGLYTYTFEAERKENCPACSQLP 339

Query: 438 LSLEINTSRSKLRDFVEKIVK------AKLGINFPLIMHGSNLLYEVGDDLDEVEVANYA 491
            +++ + S +KL++ ++ +            I   L      L  +    ++E    N +
Sbjct: 340 QNIQFSPS-AKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLS 398

Query: 492 ANLEKVKIQASSVTLCSSP 510
             L+++ +        +  
Sbjct: 399 KTLKELGLVDGQELAVADV 417

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  191 bits (486), Expect = 1e-54
 Identities = 41/199 (20%), Positives = 79/199 (39%), Gaps = 12/199 (6%)

Query: 5   RQL--------EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQF 56
           RQL        EA++ A V ++ A   G E+LK L L G     IID + +   +    F
Sbjct: 10  RQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNF 69

Query: 57  LFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD-PKFNVEFFKQFNVVLNGLDNLD 115
             ++S +G+++A+ A + + +    +S +    + ++    +  FF +F VV+       
Sbjct: 70  FLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPES 129

Query: 116 ARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPS 175
               +  +   + +PL+   T G +G + + +K      E  P        +      P 
Sbjct: 130 TSLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHP-VIESHPD--NALEDLRLDKPFPE 186

Query: 176 KFVHCIVWAKDLLFAKLFG 194
              H   +  D +  K   
Sbjct: 187 LREHFQSYDLDHMEKKDHS 205

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} Length = 247

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

 Score = 95.4 bits (236), Expect = 8e-23
 Identities = 63/218 (28%), Positives = 102/218 (46%), Gaps = 2/218 (0%)

Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
           EA+K ++VL+VG GG+GC   + LA +G  ++ ++D DT+ +SNL RQ L   + VGQ K
Sbjct: 26  EALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPK 85

Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA 127
            + ARDA+ +  P ++IT  +A + D +      +   V+ +  DN+  R  +N  C AA
Sbjct: 86  VESARDALTRINPHIAITPVNALLDDAELAALIAEHDLVL-DCTDNVAVRNQLNAGCFAA 144

Query: 128 DVPLVESGTTGFLGQVTVHVKGKTE-CYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKD 186
            VPLV        GQ+TV      E CY C  +   +    C      +  +  I   + 
Sbjct: 145 KVPLVSGAAIRMEGQITVFTYQDGEPCYRCLSRLFGENALTCVEAGVMAPLIGVIGSLQA 204

Query: 187 LLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKD 224
           +   K+     +     +   DA +    E   +R   
Sbjct: 205 MEAIKMLAGYGKPASGKIVMYDAMTCQFREMKLMRNPG 242

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	563
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	100.0
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	100.0
d1y8xb1	92	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	98.45
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.7
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.31
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.28
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.13
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.83
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.77
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.7
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	96.54
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.48
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.4
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.3
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	96.18
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.16
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	95.97
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	95.9
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	95.86
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	95.79
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	95.75
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	95.7
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	95.7
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	95.62
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	95.57
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	95.56
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	95.5
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	95.48
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	95.46
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	95.45
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	95.45
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	95.43
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	95.37
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	95.34
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.33
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	95.31
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	95.28
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	95.27
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.08
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	95.02
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.0
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	94.98
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	94.9
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	94.89
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	94.85
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	94.77
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	94.72
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	94.7
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.65
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	94.62
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	94.61
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.6
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	94.58
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	94.58
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	94.51
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	94.5
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	94.48
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	94.47
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	94.45
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	94.41
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	94.36
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	94.3
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	94.28
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	94.06
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	94.04
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	94.03
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	94.03
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	94.02
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	94.02
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	93.96
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	93.92
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	93.89
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	93.89
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	93.86
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	93.83
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	93.81
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	93.81
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	93.73
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	93.72
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	93.71
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	93.71
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	93.62
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	93.39
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	93.35
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	93.35
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	93.3
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	93.26
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	93.24
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	93.15
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	93.11
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	93.08
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	93.06
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	93.02
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	92.87
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	92.82
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	92.82
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	92.77
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	92.7
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	92.55
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	92.47
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	92.47
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	92.46
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	92.35
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	92.3
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	92.27
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	92.24
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	92.22
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	92.17
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	92.15
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	92.04
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	91.97
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	91.96
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	91.71
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	91.66
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	91.6
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	91.57
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	91.55
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	91.53
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	91.39
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	91.33
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	91.25
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	91.17
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	91.07
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	91.03
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	91.01
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	91.0
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	90.87
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	90.81
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	90.75
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	90.59
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	90.51
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	90.47
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	90.46
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	90.44
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	90.44
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	90.42
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	90.37
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	90.36
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	90.33
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	90.24
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	90.21
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	90.18
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	90.08
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	90.06
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	89.87
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	89.81
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	89.81
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	89.81
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	89.76
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	89.71
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	89.66
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	89.63
d1w5fa1	194	Cell-division protein FtsZ {Thermotoga maritima [T	89.62
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	89.5
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	89.45
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	89.37
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	89.21
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	89.15
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	89.1
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	88.84
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	88.8
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	88.7
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	88.69
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	88.66
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	88.57
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	88.5
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	88.47
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	88.44
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	88.38
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	88.31
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	88.31
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	88.27
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	88.26
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	88.22
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	88.14
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	88.11
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	88.05
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	87.91
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	87.78
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	87.7
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	87.56
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	87.52
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	87.52
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	87.49
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	87.45
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	87.36
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	86.68
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	86.58
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	86.42
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	86.22
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	86.13
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	85.87
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	85.85
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	85.67
d1wf9a1	94	NPL4-like protein 1 {Thale cress (Arabidopsis thal	85.65
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	85.42
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	85.32
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	85.14
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	84.95
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	84.9
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	84.9
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	84.89
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	84.74
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	84.54
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	84.48
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	84.22
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	84.19
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	84.18
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	84.01
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	83.79
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	83.75
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	83.7
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	83.67
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	83.57
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	83.39
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	83.32
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	83.15
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	82.74
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	82.71
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	82.61
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	82.53
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	82.45
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	82.35
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	82.3
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	81.98
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	81.88
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	81.88
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	81.76
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	81.61
d2vapa1	209	Cell-division protein FtsZ {Archaeon Methanococcus	81.51
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	81.45
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	81.33
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	81.3
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	81.15
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	80.78
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	80.52
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	80.43
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	80.38
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	80.16
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	80.08

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-79  Score=652.88  Aligned_cols=370  Identities=32%  Similarity=0.525  Sum_probs=296.4

Q ss_pred             CHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCc
Q 008516            3 SERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQM   82 (563)
Q Consensus         3 ~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v   82 (563)
                      +|..|.+|+++||+|||+||+|||++|+|+++|||+|+|+|+|+|+.|||||||||+.+|||++||++|+++++++||++
T Consensus        28 ~e~~~~~l~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v  107 (426)
T d1yovb1          28 TESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNC  107 (426)
T ss_dssp             SSHHHHHHHHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTC
T ss_pred             hHHHHHHHhcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCC
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHH------------hcCCCEEEeccccceeeEEEEeCCC
Q 008516           83 SITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL------------AADVPLVESGTTGFLGQVTVHVKGK  150 (563)
Q Consensus        83 ~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~------------~~~~pli~~gt~G~~G~v~v~~~~~  150 (563)
                      +|+++..++.+  ++.+++++||+|++|+||.++|+++|++|+            +.++|+|++|+.|+.|++++++|+.
T Consensus       108 ~i~~~~~~i~~--~~~~~~~~~DlVi~~~Dn~~aR~~in~~c~~l~k~~~~~~~~~~~iPlI~gg~~G~~G~~~vi~p~~  185 (426)
T d1yovb1         108 NVVPHFNKIQD--FNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGM  185 (426)
T ss_dssp             CCEEECSCGGG--BCHHHHTTCSEEEECCSCHHHHHHHHHHHHHTCCEETTEECGGGCCCEEEEEEETTEEEEEEECTTT
T ss_pred             ceEeeeccccc--hHHHHHHhcchheeccCcHHHHHHHHHHHHHhhcccccccccccCCceEEeEEeeeEEEEEEECCCC
Confidence            99999999864  457899999999999999999999999997            4578999999999999999999999


Q ss_pred             CccccccCC--CCCCCCCceeeccCCCCchhHHHHHHHHHHHHHhCCCCcccccccCCccccchhhhhhhhhcCCchhHH
Q 008516          151 TECYECQPK--PAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDID  228 (563)
Q Consensus       151 t~Cy~C~~~--~~~~~~p~cti~~~p~~~~hci~~a~~~lf~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (563)
                      |+||+|..+  |+++++|+|||+++|+.++|||+||+.+.|...+.                                  
T Consensus       186 t~Cy~C~~~~~p~~~~~p~CTi~~~P~~~~hci~~ak~l~~~~~~~----------------------------------  231 (426)
T d1yovb1         186 TACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQP----------------------------------  231 (426)
T ss_dssp             SCCGGGGGGGSCCCCCCCHHHHHHCCCSHHHHHHHHHHTHHHHSCT----------------------------------
T ss_pred             CCCcCcCCCCCCCCCCCCcccccCCCCCchheeehhhhhccccccc----------------------------------
Confidence            999999865  66789999999999999999999999853321100                                  


Q ss_pred             HHHHHHhhhhhhccHHHHhcCCcccCCCCCCCccccCCCCCcchhhhcccccccccccchhhhHHhhcCCCCCCCccccc
Q 008516          229 QYGRRIYDHVFGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLL  308 (563)
Q Consensus       229 ~~a~~~f~~~F~~~I~~ll~~~~~W~~~~~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  308 (563)
                                                     .                                                
T Consensus       232 -------------------------------~------------------------------------------------  232 (426)
T d1yovb1         232 -------------------------------F------------------------------------------------  232 (426)
T ss_dssp             -------------------------------T------------------------------------------------
T ss_pred             -------------------------------c------------------------------------------------
Confidence                                           0                                                


Q ss_pred             cchHHHHHHHHHHHHhhhhccCCcccCCCcHhHHHHHHHHHHHHHHHcCCCCCCHHHHHhhhcccccchhhHHHHHHHHH
Q 008516          309 ESSRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLI  388 (563)
Q Consensus       309 e~~~~f~~~~~~l~~~~~~~~~~l~FdKDDd~h~dFV~AasNLRA~~f~I~~~s~~~~K~iAGnIIPAIATTnAiVAGl~  388 (563)
                                          .....||+||+.||+||+++||+||.+|+|+.+|++.+|++|||||||||||||||||++
T Consensus       233 --------------------~~~~~~d~dd~~~i~~i~~~a~~ra~~~~I~~~~~~~~k~ia~nIIPaiatTnAIVagl~  292 (426)
T d1yovb1         233 --------------------GEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVC  292 (426)
T ss_dssp             --------------------STTCCCCTTCHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHTTCCCCCHHHHHHHHHHH
T ss_pred             --------------------cccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHhhccccccccHHHHHHHHH
Confidence                                011269999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCccccceeeecccccccccccccCCCCCCCCcccCCCccEEEEEcCCCCCHHHHHHHHHHHh--cCCCcC
Q 008516          389 VIEAIKVLLKDTDKYRMTYCLEHITKKMLLMPVEPYEPNKSCYVCSETPLSLEINTSRSKLRDFVEKIVKAK--LGINFP  466 (563)
Q Consensus       389 vlE~~K~l~~~~~~~r~~f~~~~~~~~~~~~p~~~~~pn~~C~vC~~~~~~l~i~~~~~TL~~li~~~lk~~--~~l~~~  466 (563)
                      ++|++|++++.....+|.|+.... .+ ......+.+|||+|++|+..+..++++ +++||+||++++ +++  +++..|
T Consensus       293 ~~E~iK~lt~~~~p~~n~~~~~~~-~~-~~~~~~~~~k~~~C~vC~~~~~~~~~~-~~~tL~~li~~~-~~~~~l~~~~p  368 (426)
T d1yovb1         293 ATEVFKIATSAYIPLNNYLVFNDV-DG-LYTYTFEAERKENCPACSQLPQNIQFS-PSAKLQEVLDYL-TNSASLQMKSP  368 (426)
T ss_dssp             HHHHHHHHHCSSCCCCSEEEEECS-BS-CEEEEECCCCCTTCTTTCSSCBCCC-------CTTHHHHT-TTCSSSCCSSC
T ss_pred             HHHHHHHHhcCCccccceEEEecC-CC-ceEeeeeccCCCCCCeeCCceEEEEEC-CCCCHHHHHHHH-HHhhCcCccCC
Confidence            999999999976555554443221 11 223334456899999999877777777 579999999995 554  456667


Q ss_pred             eEE----ecCeEEEeeCCCchHHHHHHhhhhhhcchhhhcCcccCCCcceeecc
Q 008516          467 LIM----HGSNLLYEVGDDLDEVEVANYAANLEKVKIQASSVTLCSSPPDFCCS  516 (563)
Q Consensus       467 ~i~----~g~~~LY~~~~~~~~~~~~~~~~nl~k~L~el~~gv~~g~~~~~~~~  516 (563)
                      ++.    .++++||..+.+   ++++.+++||+|+|+||  |+++|+++.+++.
T Consensus       369 ~~~~~~~~~~~~Ly~~~~~---~le~~~~~nl~k~L~eL--~~~~g~~l~v~D~  417 (426)
T d1yovb1         369 AITATLEGKNRTLYLQSVT---SIEERTRPNLSKTLKEL--GLVDGQELAVADV  417 (426)
T ss_dssp             CEECC-----CEECCCC-------CGGGSTTC----------------CBCCBT
T ss_pred             cceeeecCCCcEEEecCCc---hhhHHhhhhhcCCHHHh--CCCCCCEEEEECC
Confidence            663    357799976543   23346899999999999  8999999988864

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.3e-35  Score=289.89  Aligned_cols=191  Identities=32%  Similarity=0.518  Sum_probs=160.7

Q ss_pred             CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (563)
Q Consensus         2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~   81 (563)
                      +++++|+||+++||+|+|+||+||+++++|+++|||+|+|+|.|.||.|||||||||+.+|||++|+++++++++++||+
T Consensus        20 ~g~~~Q~kL~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~   99 (247)
T d1jw9b_          20 FDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPH   99 (247)
T ss_dssp             THHHHHHHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTT
T ss_pred             CCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhcc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeccCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEE-eCCCCccccccCCC
Q 008516           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVH-VKGKTECYECQPKP  160 (563)
Q Consensus        82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~-~~~~t~Cy~C~~~~  160 (563)
                      ++|+++...++.. ....++..+|+|++++|+.++|.++|++|+.+++|+|.++..|+.|++.++ .++.++|+.|....
T Consensus       100 ~~i~~~~~~~~~~-~~~~~~~~~divid~~d~~~~~~~in~~~~~~~ip~i~g~~~~~~g~~~~~~~~~~~~c~~c~~~~  178 (247)
T d1jw9b_         100 IAITPVNALLDDA-ELAALIAEHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIRMEGQITVFTYQDGEPCYRCLSRL  178 (247)
T ss_dssp             SEEEEECSCCCHH-HHHHHHHTSSEEEECCSSHHHHHHHHHHHHHHTCCEEEEEEEBTEEEEEEECCCTTCCCTHHHHTT
T ss_pred             cchhhhhhhhhhc-cccccccccceeeeccchhhhhhhHHHHHHHhCCCcccccccccccceEEEeecCCcccccccccc
Confidence            9999999887543 346778899999999999999999999999999999999999999999987 57889999999766


Q ss_pred             CCCCCCceeeccC--CCCchhHHHHHHHHHHHHHhC
Q 008516          161 APKTYPVCTITST--PSKFVHCIVWAKDLLFAKLFG  194 (563)
Q Consensus       161 ~~~~~p~cti~~~--p~~~~hci~~a~~~lf~~lf~  194 (563)
                      .+...+.|.....  |......-..|.+ ..+.+.+
T Consensus       179 ~~~~~~~~~~~g~~~p~~~~v~~~~a~e-~ik~l~g  213 (247)
T d1jw9b_         179 FGENALTCVEAGVMAPLIGVIGSLQAME-AIKMLAG  213 (247)
T ss_dssp             CCC-------CCBCHHHHHHHHHHHHHH-HHHHHHT
T ss_pred             cccccCCcccCCcccccchhHHHHHHHH-HHHHHhc
Confidence            6555555543322  2122333345566 4566655

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-34  Score=313.52  Aligned_cols=173  Identities=20%  Similarity=0.319  Sum_probs=150.1

Q ss_pred             CCHHHHHHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 008516            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (563)
Q Consensus         2 ~~~~~q~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~   81 (563)
                      +|+++|++|++++|+|||+||+|||++|||+++|||+|+|+|.|.|+.+||+|||+|+.+|||++||++++++++++||+
T Consensus        15 wG~~gQ~~L~~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp~   94 (529)
T d1yova1          15 WGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSD   94 (529)
T ss_dssp             HHHHHHHHHHHCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCTT
T ss_pred             hhHHHHHHHhCCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhCCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeccCCCCC-cchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccceeeEEEEeCCCCccccccCCC
Q 008516           82 MSITAHHANVKDP-KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKP  160 (563)
Q Consensus        82 v~I~~~~~~i~~~-~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~G~v~v~~~~~t~Cy~C~~~~  160 (563)
                      ++++.+...+.+. ..+.+|++++|+||++.|+.++|..++++|+.+++|+|.+|+.|+.|++++.++. +.+.++.+. 
T Consensus        95 v~i~~~~~~~~~~~~~~~~~~~~~dvVv~~~~~~~~~~~l~~~c~~~~ip~i~~~~~G~~G~v~~~~~~-~~~~e~~p~-  172 (529)
T d1yova1          95 VSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLICRTYGLVGYMRIIIKE-HPVIESHPD-  172 (529)
T ss_dssp             SBCCEESSCHHHHHHSCGGGGGGCSEEEEESCCHHHHHHHHHHHHHHTCCEEEEEEETTEEEEEEECSC-EEESCCCCS-
T ss_pred             CcEEEEcCCchhhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccCCEEEEEEEeCC-ceEEecCCC-
Confidence            9999887765321 2346889999999999999999999999999999999999999999999999986 456665443 


Q ss_pred             CCCCCCceeeccCCCCc
Q 008516          161 APKTYPVCTITSTPSKF  177 (563)
Q Consensus       161 ~~~~~p~cti~~~p~~~  177 (563)
                       ....+.|..+.+|...
T Consensus       173 -~~~~dlrl~~p~p~l~  188 (529)
T d1yova1         173 -NALEDLRLDKPFPELR  188 (529)
T ss_dssp             -SCCCCCCSSSCCHHHH
T ss_pred             -CCCCccccCCCcHHHH
Confidence             2333444444444333

>d1y8xb1 c.111.1.2 (B:349-440) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=1.2e-07  Score=77.12  Aligned_cols=73  Identities=14%  Similarity=0.145  Sum_probs=60.0

Q ss_pred             EEEcCCCCCHHHHHHHHHHH-hcCCCcCeEEe----cCeEEEeeCCCchHHHHHHhhhhhhcchhhhcCcccCCCcceee
Q 008516          440 LEINTSRSKLRDFVEKIVKA-KLGINFPLIMH----GSNLLYEVGDDLDEVEVANYAANLEKVKIQASSVTLCSSPPDFC  514 (563)
Q Consensus       440 l~i~~~~~TL~~li~~~lk~-~~~l~~~~i~~----g~~~LY~~~~~~~~~~~~~~~~nl~k~L~el~~gv~~g~~~~~~  514 (563)
                      ++++ .++||++||+.+.+. ++.|..|+|+.    +++.||....   ++.+++++.||.|+|+||  |+.+|..+.|+
T Consensus         5 l~~~-~~~TL~~li~~L~e~p~~qlk~Psltt~~~g~~ktLYm~~p---p~Lee~Tr~NL~k~L~eL--gl~dG~ei~Vt   78 (92)
T d1y8xb1           5 IQFS-PSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSV---TSIEERTRPNLSKTLKEL--GLVDGQELAVA   78 (92)
T ss_dssp             EECC-TTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSC---HHHHHHHHHHHHSBSGGG--TCCTTCEEEEE
T ss_pred             EEcC-CCCcHHHHHHHHhhChHhhccCCceeeecCCCccEEEecCc---HHHHHHhhhccccCHHHh--CCcCCCEEEEe
Confidence            5666 578999999995432 59999999966    3669998763   578889999999999999  99999999888


Q ss_pred             ccCC
Q 008516          515 CSCN  518 (563)
Q Consensus       515 ~~~~  518 (563)
                      +--.
T Consensus        79 D~t~   82 (92)
T d1y8xb1          79 DVTT   82 (92)
T ss_dssp             CTTC
T ss_pred             cCCC
Confidence            7543

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.70  E-value=0.0001  Score=61.91  Aligned_cols=92  Identities=12%  Similarity=0.150  Sum_probs=67.7

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      .|++++|+|||.|.+|..-++.|...|. ++++++.+.-                     ....+.+.  ..  +++.+.
T Consensus         9 ~l~~k~vlVvG~G~va~~ka~~ll~~ga-~v~v~~~~~~---------------------~~~~~~~~--~~--~i~~~~   62 (113)
T d1pjqa1           9 QLRDRDCLIVGGGDVAERKARLLLEAGA-RLTVNALTFI---------------------PQFTVWAN--EG--MLTLVE   62 (113)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTB-EEEEEESSCC---------------------HHHHHHHT--TT--SCEEEE
T ss_pred             EeCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC---------------------hHHHHHHh--cC--Cceeec
Confidence            3688999999999999999999999997 6898875331                     11112221  12  233333


Q ss_pred             cCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCE
Q 008516           89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPL  131 (563)
Q Consensus        89 ~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pl  131 (563)
                      ..     +..+.+.++++|+.++++.+.-..+.+.|+..++|+
T Consensus        63 ~~-----~~~~dl~~~~lv~~at~d~~~n~~i~~~a~~~~ilV  100 (113)
T d1pjqa1          63 GP-----FDETLLDSCWLAIAATDDDTVNQRVSDAAESRRIFC  100 (113)
T ss_dssp             SS-----CCGGGGTTCSEEEECCSCHHHHHHHHHHHHHTTCEE
T ss_pred             cC-----CCHHHhCCCcEEeecCCCHHHHHHHHHHHHHcCCEE
Confidence            32     334568899999999999998889999999999974

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.31  E-value=0.00011  Score=67.01  Aligned_cols=84  Identities=21%  Similarity=0.318  Sum_probs=55.0

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      +++++|+|+|+||.|..++..|...|+.+|+|++.+.              +  --.|+...++++....+.. +...  
T Consensus        16 l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~--------------~--~~~~~~~l~~~~~~~~~~~-~~~~--   76 (182)
T d1vi2a1          16 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD--------------E--FFDKALAFAQRVNENTDCV-VTVT--   76 (182)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS--------------T--THHHHHHHHHHHHHHSSCE-EEEE--
T ss_pred             cCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccch--------------H--HHHHHHHHHHHHHhhcCcc-eEee--
Confidence            5778999999999999999999999999999987431              0  1134455555555444322 2221  


Q ss_pred             CCCCCcchHhhcccccEEEEccC
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGLD  112 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~alD  112 (563)
                      ++.+...-.+...++|+||||+.
T Consensus        77 ~~~~~~~~~~~~~~~diiIN~Tp   99 (182)
T d1vi2a1          77 DLADQQAFAEALASADILTNGTK   99 (182)
T ss_dssp             ETTCHHHHHHHHHTCSEEEECSS
T ss_pred             ecccccchhhhhcccceeccccC
Confidence            12111111344678999999974

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.28  E-value=0.0002  Score=64.02  Aligned_cols=92  Identities=18%  Similarity=0.247  Sum_probs=62.1

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      .|.+++|+|||+|++|..++++|...|+++++++.          |.         ..|++.+++.+   +  .++..+.
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~n----------Rt---------~~ka~~l~~~~---~--~~~~~~~   76 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVAN----------RT---------YERAVELARDL---G--GEAVRFD   76 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEEC----------SS---------HHHHHHHHHHH---T--CEECCGG
T ss_pred             CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEc----------Cc---------HHHHHHHHHhh---h--cccccch
Confidence            46899999999999999999999999999999963          32         24666665543   2  2332221


Q ss_pred             cCCCCCcchHhhcccccEEEEccCCHH---HHHHHHHHHHh--cCCCE
Q 008516           89 ANVKDPKFNVEFFKQFNVVLNGLDNLD---ARRHVNRLCLA--ADVPL  131 (563)
Q Consensus        89 ~~i~~~~~~~~~~~~~dvVi~alDn~~---ar~~in~~c~~--~~~pl  131 (563)
                             .-.+.+.++|+||+|+....   .+.++......  .++|+
T Consensus        77 -------~~~~~l~~~Divi~atss~~~ii~~~~i~~~~~~r~~~~~~  117 (159)
T d1gpja2          77 -------ELVDHLARSDVVVSATAAPHPVIHVDDVREALRKRDRRSPI  117 (159)
T ss_dssp             -------GHHHHHHTCSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCE
T ss_pred             -------hHHHHhccCCEEEEecCCCCccccHhhhHHHHHhcccCCCe
Confidence                   12456789999999986543   24444444333  24554

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.13  E-value=0.00075  Score=57.74  Aligned_cols=92  Identities=17%  Similarity=0.245  Sum_probs=63.1

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK   92 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~   92 (563)
                      ++|+|+|+|.+|..+++.|...|. .++++|.|.                   .+++-+++   ++    .+..+.++.+
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~-~v~vid~d~-------------------~~~~~~~~---~~----~~~vi~Gd~~   53 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDK-------------------DICKKASA---EI----DALVINGDCT   53 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHH---HC----SSEEEESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-CcceecCCh-------------------hhhhhhhh---hh----hhhhccCccc
Confidence            589999999999999999999996 689998643                   22222222   11    2334555554


Q ss_pred             CCc-chHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCE
Q 008516           93 DPK-FNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPL  131 (563)
Q Consensus        93 ~~~-~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pl  131 (563)
                      +.. ....-++++|.++.++++.+.-..+...++..+.+-
T Consensus        54 ~~~~l~~~~i~~a~~vv~~t~~d~~N~~~~~~~k~~~~~~   93 (132)
T d1lssa_          54 KIKTLEDAGIEDADMYIAVTGKEEVNLMSSLLAKSYGINK   93 (132)
T ss_dssp             SHHHHHHTTTTTCSEEEECCSCHHHHHHHHHHHHHTTCCC
T ss_pred             chhhhhhcChhhhhhhcccCCcHHHHHHHHHHHHHcCCce
Confidence            322 223346789999999999887777777777766653

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.83  E-value=0.00058  Score=59.86  Aligned_cols=111  Identities=14%  Similarity=0.225  Sum_probs=62.4

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccC-cccCcccc-------CCCCCCCCc-hHHHHHHHHHHhhC
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIE-VSNLNRQF-------LFRQSHVGQ-SKAKVARDAVLKFR   79 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve-~sNLnRqf-------Lf~~~diGk-~Ka~va~~~l~~~n   79 (563)
                      +|++++|+|||.|.+|.+-++.|..+|. ++++++++.-+ ..-+..++       .++..+... .+     ......+
T Consensus        10 ~l~gkrvLViGgG~va~~ka~~Ll~~GA-~VtVvap~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~   83 (150)
T d1kyqa1          10 QLKDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSPDLHKSIIPKFGKFIQNKDQPDYREDAKRFINP-----NWDPTKN   83 (150)
T ss_dssp             CCTTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEEEEECTTHHHHHCGGGC-----------CEEECT-----TCCTTSC
T ss_pred             eeCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCCHHHHHHHHhccchhhhhhhhhhhhhhcch-----hhhhccc
Confidence            4789999999999999999999999996 89999765322 11111111       000000000 00     0000001


Q ss_pred             CCceEEEeccCCCCCcc-hHhhcccccEEEEccCCHHHHHHHHHHHHhc
Q 008516           80 PQMSITAHHANVKDPKF-NVEFFKQFNVVLNGLDNLDARRHVNRLCLAA  127 (563)
Q Consensus        80 p~v~I~~~~~~i~~~~~-~~~~~~~~dvVi~alDn~~ar~~in~~c~~~  127 (563)
                      .  .++........... .......+++|+.|+++.+....+.+.|+..
T Consensus        84 ~--~~~~i~~~~~~~~l~~~~~~~~~~lVi~at~d~~~n~~i~~~a~~~  130 (150)
T d1kyqa1          84 E--IYEYIRSDFKDEYLDLENENDAWYIIMTCIPDHPESARIYHLCKER  130 (150)
T ss_dssp             C--CSEEECSSCCGGGGCCSSTTCCEEEEEECCSCHHHHHHHHHHHHHH
T ss_pred             c--ceEEEecccchhhhcccccccceEEEEeecCCHHHHHHHHHHHHHh
Confidence            1  12222222211110 1122457899999999999888888888774

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.77  E-value=0.0017  Score=57.12  Aligned_cols=97  Identities=16%  Similarity=0.120  Sum_probs=62.6

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      .+++|+|+|+|.+|..++++|+..|. +++|+|.+.                   .|++.++    +-.+...+..  ..
T Consensus         1 ~~K~IliiGaG~~G~~~a~~L~~~g~-~V~v~dr~~-------------------~~a~~l~----~~~~~~~~~~--~~   54 (182)
T d1e5qa1           1 ATKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTL-------------------ESAKKLS----AGVQHSTPIS--LD   54 (182)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESCH-------------------HHHHHHH----TTCTTEEEEE--CC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCh-------------------HHHHHHH----hccccccccc--cc
Confidence            36899999999999999999999998 799998332                   3444333    3333333322  22


Q ss_pred             CCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEe
Q 008516           91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVES  134 (563)
Q Consensus        91 i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~  134 (563)
                      ........+.+...|+++.++.... ...+-..|...+..+++.
T Consensus        55 ~~~~~~~~~~i~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~   97 (182)
T d1e5qa1          55 VNDDAALDAEVAKHDLVISLIPYTF-HATVIKSAIRQKKHVVTT   97 (182)
T ss_dssp             TTCHHHHHHHHTTSSEEEECSCGGG-HHHHHHHHHHHTCEEECS
T ss_pred             ccchhhhHhhhhccceeEeeccchh-hhHHHHHHHhhccceeec
Confidence            2222233556788899998876543 334455666666666554

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.70  E-value=0.0019  Score=57.50  Aligned_cols=91  Identities=20%  Similarity=0.195  Sum_probs=58.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHH--HhhCCCceEEEecc
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAV--LKFRPQMSITAHHA   89 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l--~~~np~v~I~~~~~   89 (563)
                      +++|.|+|+|.+|+.++..|+..|. +++++|.+.                   .+.+.+.+.-  ....|..+......
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~   60 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDA-------------------QRIKEIQDRGAIIAEGPGLAGTAHPD   60 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH-------------------HHHHHHHHHTSEEEESSSCCEEECCS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-EEEEEECCH-------------------HHHHHHHHcCCCchhhhhhhhhhhhh
Confidence            5799999999999999999999997 788887432                   2332222211  11123333333222


Q ss_pred             CCCCCcchHhhcccccEEEEccCCHHHHHHHHHHH
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLC  124 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c  124 (563)
                      ..+.  ...+.++++|+|+.++.....+..+.++.
T Consensus        61 ~~~~--~~~e~~~~aD~iii~v~~~~~~~~~~~i~   93 (184)
T d1bg6a2          61 LLTS--DIGLAVKDADVILIVVPAIHHASIAANIA   93 (184)
T ss_dssp             EEES--CHHHHHTTCSEEEECSCGGGHHHHHHHHG
T ss_pred             hhhh--hhHhHhcCCCEEEEEEchhHHHHHHHHhh
Confidence            2221  23567899999999998777776666654

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=96.54  E-value=0.0015  Score=58.35  Aligned_cols=33  Identities=33%  Similarity=0.636  Sum_probs=30.8

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEe
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      ++++|+|+|+||.|..++..|...|+++|+|++
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~n   48 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYA   48 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEEC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEec
Confidence            577999999999999999999999999999964

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.48  E-value=0.017  Score=48.62  Aligned_cols=95  Identities=18%  Similarity=0.290  Sum_probs=58.6

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK   92 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~   92 (563)
                      ++++|+|+|.+|..+++.|...|. .++++|.|.-....+                       +...  .  .++.++.+
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~-~vvvid~d~~~~~~~-----------------------~~~~--~--~~~~gd~~   52 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAY-----------------------ASYA--T--HAVIANAT   52 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHHT-----------------------TTTC--S--EEEECCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-eEEEecCcHHHHHHH-----------------------HHhC--C--cceeeecc
Confidence            478999999999999999999997 588888665322211                       1111  1  12233443


Q ss_pred             CCc-chHhhcccccEEEEccCC-HHHHHHHHHHHHhcCCCEEEec
Q 008516           93 DPK-FNVEFFKQFNVVLNGLDN-LDARRHVNRLCLAADVPLVESG  135 (563)
Q Consensus        93 ~~~-~~~~~~~~~dvVi~alDn-~~ar~~in~~c~~~~~pli~~g  135 (563)
                      +.. ....-+.++|.|+.++++ ......+.......+.+-+-+.
T Consensus        53 ~~~~l~~a~i~~a~~vi~~~~~~~~~~~~~~~~~~~~~~~~iiar   97 (134)
T d2hmva1          53 EENELLSLGIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWVK   97 (134)
T ss_dssp             CTTHHHHHTGGGCSEEEECCCSCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             cchhhhccCCccccEEEEEcCchHHhHHHHHHHHHHcCCCcEEee
Confidence            332 223347889998888765 4444444445555665555443

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.40  E-value=0.0019  Score=57.16  Aligned_cols=33  Identities=33%  Similarity=0.473  Sum_probs=30.9

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEe
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      ++.||.|||+|.+|+.++-.|++.|+.++.++|
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D   38 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYD   38 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEEC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEE
Confidence            468999999999999999999999999999987

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=96.30  E-value=0.0037  Score=55.69  Aligned_cols=73  Identities=23%  Similarity=0.308  Sum_probs=51.5

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      +.+++|+|+|+||.+..++-.|...|+ +|+|++          |.         ..|++.+++.+.+..   .+.....
T Consensus        16 ~~~k~vlIlGaGGaarai~~al~~~g~-~i~I~n----------Rt---------~~ka~~l~~~~~~~~---~~~~~~~   72 (170)
T d1nyta1          16 RPGLRILLIGAGGASRGVLLPLLSLDC-AVTITN----------RT---------VSRAEELAKLFAHTG---SIQALSM   72 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEC----------SS---------HHHHHHHHHHTGGGS---SEEECCS
T ss_pred             CCCCEEEEECCcHHHHHHHHHhcccce-EEEecc----------ch---------HHHHHHHHHHHhhcc---ccccccc
Confidence            467899999999999999999999998 588863          32         256777776666554   2322211


Q ss_pred             CCCCCcchHhhcccccEEEEccC
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGLD  112 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~alD  112 (563)
                             +.....++|+||||+.
T Consensus        73 -------~~~~~~~~dliIN~Tp   88 (170)
T d1nyta1          73 -------DELEGHEFDLIINATS   88 (170)
T ss_dssp             -------GGGTTCCCSEEEECCS
T ss_pred             -------ccccccccceeecccc
Confidence                   1122357899999975

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.0075  Score=57.31  Aligned_cols=66  Identities=14%  Similarity=0.211  Sum_probs=54.9

Q ss_pred             HHHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEE
Q 008516            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITA   86 (563)
Q Consensus         8 ~kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~   86 (563)
                      ++|+++.++|.| .+|||.++++.|+..|. ++.++|.+                   ..|.+.+++.+++..+..++..
T Consensus         6 ~~lk~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~-------------------~~~l~~~~~~l~~~~~~~~~~~   65 (257)
T d1xg5a_           6 ERWRDRLALVTGASGGIGAAVARALVQQGL-KVVGCART-------------------VGNIEELAAECKSAGYPGTLIP   65 (257)
T ss_dssp             GGGTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTCSSEEEE
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCCCceEEE
Confidence            568899999998 67999999999999998 68887632                   3577888888888888788888


Q ss_pred             eccCCCC
Q 008516           87 HHANVKD   93 (563)
Q Consensus        87 ~~~~i~~   93 (563)
                      +..++++
T Consensus        66 ~~~Dls~   72 (257)
T d1xg5a_          66 YRCDLSN   72 (257)
T ss_dssp             EECCTTC
T ss_pred             EEccCCC
Confidence            8888854

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.16  E-value=0.0037  Score=50.09  Aligned_cols=90  Identities=13%  Similarity=0.218  Sum_probs=56.9

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      ++++||+|+|+|..|-.+++.|...|. ++++.|...-. ..  +.                     .+.....+.  ..
T Consensus         3 ~~~K~v~ViGlG~sG~s~a~~L~~~g~-~v~~~D~~~~~-~~--~~---------------------~~~~~~~~~--~~   55 (93)
T d2jfga1           3 YQGKNVVIIGLGLTGLSCVDFFLARGV-TPRVMDTRMTP-PG--LD---------------------KLPEAVERH--TG   55 (93)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHTTC-CCEEEESSSSC-TT--GG---------------------GSCTTSCEE--ES
T ss_pred             cCCCEEEEEeECHHHHHHHHHHHHCCC-EEEEeeCCcCc-hh--HH---------------------HHhhcccee--ec
Confidence            578999999999999999999999996 68888853211 00  00                     111122221  11


Q ss_pred             CCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEE
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLV  132 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli  132 (563)
                           .++...+.++|+||.+..= ....-+-+.+++.++|+|
T Consensus        56 -----~~~~~~~~~~d~vi~SPGi-~~~~~~~~~a~~~gi~ii   92 (93)
T d2jfga1          56 -----SLNDEWLMAADLIVASPGI-ALAHPSLSAAADAGIEIV   92 (93)
T ss_dssp             -----BCCHHHHHHCSEEEECTTS-CTTSHHHHHHHHTTCEEE
T ss_pred             -----ccchhhhccCCEEEECCCC-CCCCHHHHHHHHcCCCeE
Confidence                 1234567899999986432 222234456778888876

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=95.97  E-value=0.006  Score=54.51  Aligned_cols=73  Identities=25%  Similarity=0.336  Sum_probs=52.9

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      +.+++|+|+|+||.|-.++..|.. |..+|+|+.          |.         ..|++.+++.+....   ++.....
T Consensus        16 ~~~k~vlIlGaGGaarai~~aL~~-~~~~i~I~n----------R~---------~~~a~~l~~~~~~~~---~~~~~~~   72 (171)
T d1p77a1          16 RPNQHVLILGAGGATKGVLLPLLQ-AQQNIVLAN----------RT---------FSKTKELAERFQPYG---NIQAVSM   72 (171)
T ss_dssp             CTTCEEEEECCSHHHHTTHHHHHH-TTCEEEEEE----------SS---------HHHHHHHHHHHGGGS---CEEEEEG
T ss_pred             CCCCEEEEECCcHHHHHHHHHHcc-cCceeeecc----------ch---------HHHHHHHHHHHhhcc---ccchhhh
Confidence            567899999999999999999986 668999873          33         267888888776544   3333322


Q ss_pred             CCCCCcchHhhcccccEEEEccC
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGLD  112 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~alD  112 (563)
                      .       ..-..++|+||||+.
T Consensus        73 ~-------~~~~~~~diiIN~tp   88 (171)
T d1p77a1          73 D-------SIPLQTYDLVINATS   88 (171)
T ss_dssp             G-------GCCCSCCSEEEECCC
T ss_pred             c-------cccccccceeeeccc
Confidence            1       112578999999975

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.90  E-value=0.024  Score=49.65  Aligned_cols=115  Identities=20%  Similarity=0.293  Sum_probs=64.8

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC-
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV-   91 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i-   91 (563)
                      .+|.+||+|-+|+.++++|+..|. ++.+.|.+.-....+.-.        |........+.++.-  ++-+......- 
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~-~v~~~d~~~~~~~~~~~~--------~~~~~~~~~e~~~~~--diii~~v~~~~~   70 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGY-LLNVFDLVQSAVDGLVAA--------GASAARSARDAVQGA--DVVISMLPASQH   70 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHT--------TCEECSSHHHHHTSC--SEEEECCSCHHH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCC-eEEEEECchhhhhhhhhh--------hccccchhhhhcccc--Ceeeecccchhh
Confidence            379999999999999999999998 688877543222221100        111111112222211  12222111110 


Q ss_pred             -----CCCcchHhhcccccEEEEc-cCCHHHHHHHHHHHHhcCCCEEEecccc
Q 008516           92 -----KDPKFNVEFFKQFNVVLNG-LDNLDARRHVNRLCLAADVPLVESGTTG  138 (563)
Q Consensus        92 -----~~~~~~~~~~~~~dvVi~a-lDn~~ar~~in~~c~~~~~pli~~gt~G  138 (563)
                           ....-......+=++||++ +-+++.-..+.+.+...++.+++++..|
T Consensus        71 ~~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~~~dapv~G  123 (162)
T d3cuma2          71 VEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSG  123 (162)
T ss_dssp             HHHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEES
T ss_pred             HHHHHhccccccccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCcEEeccccc
Confidence                 0000012233444677774 4557777788888999999999988776

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.86  E-value=0.0022  Score=57.58  Aligned_cols=35  Identities=23%  Similarity=0.347  Sum_probs=31.0

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .+.+|+|+|+|++|.-.+..+...|..+|.++|.+
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~   61 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSR   61 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCC
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccch
Confidence            35689999999999999999999999999998743

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=95.79  E-value=0.005  Score=55.80  Aligned_cols=162  Identities=13%  Similarity=0.112  Sum_probs=92.7

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCccc----CccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSN----LNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sN----LnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      +||.|||+|-+|+-++-.+++.|+ +++++|.|.=....    +.+. +-+...-|+...+...+.+.++.    ..   
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~~~~~i~~~-l~~~~~~~~~~~~~~~~~~~~i~----~~---   75 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGT-PILMKDINEHGIEQGLAEAAKL-LVGRVDKGRMTPAKMAEVLNGIR----PT---   75 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHHHHH-HHHHHTTTSSCHHHHHHHHHHEE----EE---
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHhhhhhhhhhh-HHhhhcccccchhhhhhhhceee----cc---
Confidence            469999999999999999999997 58999975421111    0000 00001112222222233333221    11   


Q ss_pred             cCCCCCcchHhhcccccEEEEcc-CCHHHHHHHHHHHHhcC--CCEEEeccccceee-EEEEeCCCCccccccCCCCCCC
Q 008516           89 ANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLAAD--VPLVESGTTGFLGQ-VTVHVKGKTECYECQPKPAPKT  164 (563)
Q Consensus        89 ~~i~~~~~~~~~~~~~dvVi~al-Dn~~ar~~in~~c~~~~--~pli~~gt~G~~G~-v~v~~~~~t~Cy~C~~~~~~~~  164 (563)
                      .       +.+-+.+.|+|+.|. .+.+..+.+-+..-..-  -..+.+.|.+..-. +.-...+..-+...+.-.++..
T Consensus        76 ~-------~~~~~~~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~~la~~~~~p~r~~g~Hf~nP~~~  148 (186)
T d1wdka3          76 L-------SYGDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHM  148 (186)
T ss_dssp             S-------SSTTGGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGGCSCGGGEEEEECCSSTTT
T ss_pred             c-------ccccccccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccHHHHHHhccCchheEeeccccCccc
Confidence            1       112367899999975 66777665544433322  13455555554311 0000122333445556566778


Q ss_pred             CCceeeccCCCCchhHHHHHHHHHHHH
Q 008516          165 YPVCTITSTPSKFVHCIVWAKDLLFAK  191 (563)
Q Consensus       165 ~p~cti~~~p~~~~hci~~a~~~lf~~  191 (563)
                      -|.+.|...+.+....+..+.+ +.+.
T Consensus       149 ~~lVEiv~~~~T~~~~~~~~~~-~~~~  174 (186)
T d1wdka3         149 MPLVEVIRGEKSSDLAVATTVA-YAKK  174 (186)
T ss_dssp             CCEEEEEECSSCCHHHHHHHHH-HHHH
T ss_pred             CCeEEECCCCCCCHHHHHHHHH-HHHH
Confidence            8999999899999999999987 3443

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.75  E-value=0.0059  Score=55.32  Aligned_cols=81  Identities=23%  Similarity=0.283  Sum_probs=54.9

Q ss_pred             HHHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEE
Q 008516            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITA   86 (563)
Q Consensus         8 ~kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~   86 (563)
                      ..|++++|+|.| .||+|.++++.|+..|. +++++|.+.                   .|.+.+++.+.... .+.+  
T Consensus        19 ~~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~-~~~~--   75 (191)
T d1luaa1          19 GSVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKL-------------------DKAQAAADSVNKRF-KVNV--   75 (191)
T ss_dssp             SCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSH-------------------HHHHHHHHHHHHHH-TCCC--
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccch-------------------HHHHHHHHHHHhcc-chhh--
Confidence            357899999999 69999999999999996 788887332                   34555555555432 2222  


Q ss_pred             eccCCCCCcchHhhcccccEEEEcc
Q 008516           87 HHANVKDPKFNVEFFKQFNVVLNGL  111 (563)
Q Consensus        87 ~~~~i~~~~~~~~~~~~~dvVi~al  111 (563)
                      ...++.+...-.+++.+.|+||++.
T Consensus        76 ~~~d~~~~~~~~~~~~~iDilin~A  100 (191)
T d1luaa1          76 TAAETADDASRAEAVKGAHFVFTAG  100 (191)
T ss_dssp             EEEECCSHHHHHHHTTTCSEEEECC
T ss_pred             hhhhcccHHHHHHHhcCcCeeeecC
Confidence            2223333233456788999999974

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.70  E-value=0.027  Score=49.14  Aligned_cols=32  Identities=28%  Similarity=0.528  Sum_probs=30.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEe
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      +.||.|||+|.+|+.++-.|++.|+.+|.++|
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~D   34 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFD   34 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEe
Confidence            47999999999999999999999999999998

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.70  E-value=0.0056  Score=54.33  Aligned_cols=36  Identities=22%  Similarity=0.584  Sum_probs=32.1

Q ss_pred             HHHcCCcEEEECCcHHHHHHHHHHHHhCCC-eEEEEe
Q 008516            8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQ-DIHIID   43 (563)
Q Consensus         8 ~kL~~~~VlvvGaGgiG~ellknLal~Gvg-~I~iiD   43 (563)
                      .++...||.|||+|.+|+.++-.|+..|.. +|.++|
T Consensus        15 ~~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D   51 (159)
T d2ldxa1          15 DKLSRCKITVVGVGDVGMACAISILLKGLADELALVD   51 (159)
T ss_dssp             CCCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEEC
T ss_pred             ccCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEe
Confidence            356778999999999999999999999985 699987

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=95.62  E-value=0.0027  Score=56.90  Aligned_cols=125  Identities=15%  Similarity=0.184  Sum_probs=66.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC-
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN-   90 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~-   90 (563)
                      .++|.+||+|.+|..++++|+..|+ ++++.|.+.=....+..+..-.....|-...+...+.+.  .++.-+...... 
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~ii~~~~~~~   78 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGF-VVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLK--KPRRIILLVKAGQ   78 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBC--SSCEEEECSCTTH
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhc--ccceEEEecCchH
Confidence            5789999999999999999999998 578877543222222222111111122222222222211  112222111110 


Q ss_pred             -CCCC-cchHhhcccccEEEEc-cCCHHHHHHHHHHHHhcCCCEEEeccccc
Q 008516           91 -VKDP-KFNVEFFKQFNVVLNG-LDNLDARRHVNRLCLAADVPLVESGTTGF  139 (563)
Q Consensus        91 -i~~~-~~~~~~~~~~dvVi~a-lDn~~ar~~in~~c~~~~~pli~~gt~G~  139 (563)
                       +.+- .--....+.=++||++ +-+++.-+.+.+.+...++.++++...|.
T Consensus        79 ~v~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~ldapvsGg  130 (176)
T d2pgda2          79 AVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGG  130 (176)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESH
T ss_pred             HHHHHHHHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCceeccccccC
Confidence             0000 0001223445778875 44566556677788889999999887763

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=95.57  E-value=0.023  Score=49.44  Aligned_cols=32  Identities=28%  Similarity=0.538  Sum_probs=28.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCC-CeEEEEe
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGF-QDIHIID   43 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gv-g~I~iiD   43 (563)
                      .+||.|||+|.+|+.++-.|+..|. ++|.++|
T Consensus         1 ~kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~D   33 (146)
T d1hyha1           1 ARKIGIIGLGNVGAAVAHGLIAQGVADDYVFID   33 (146)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEe
Confidence            3689999999999999999999995 6899887

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=95.56  E-value=0.026  Score=49.30  Aligned_cols=89  Identities=12%  Similarity=0.129  Sum_probs=55.0

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK   92 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~   92 (563)
                      +||.|||+|-+|+.+++.|...|. +++.+|.+.                   .+.+.    +++...   +....    
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~-------------------~~~~~----a~~~~~---~~~~~----   49 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQ-------------------STCEK----AVERQL---VDEAG----   49 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH-------------------HHHHH----HHHTTS---CSEEE----
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC-EEEEEECCc-------------------hHHHH----HHHhhc---cceee----
Confidence            479999999999999999999997 677766432                   12222    222221   00111    


Q ss_pred             CCcchHhhcccccEEEEccCCHHHHHHHHHHHHh--cCCCEEEec
Q 008516           93 DPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA--ADVPLVESG  135 (563)
Q Consensus        93 ~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~--~~~pli~~g  135 (563)
                         .+.+.++++|+||.|+........++++...  .+.-+++.+
T Consensus        50 ---~~~~~~~~~DiIilavp~~~~~~vl~~l~~~l~~~~iv~~~~   91 (165)
T d2f1ka2          50 ---QDLSLLQTAKIIFLCTPIQLILPTLEKLIPHLSPTAIVTDVA   91 (165)
T ss_dssp             ---SCGGGGTTCSEEEECSCHHHHHHHHHHHGGGSCTTCEEEECC
T ss_pred             ---eecccccccccccccCcHhhhhhhhhhhhhhcccccceeecc
Confidence               1235678999999999755556666665432  233344554

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.50  E-value=0.032  Score=48.36  Aligned_cols=76  Identities=24%  Similarity=0.354  Sum_probs=52.2

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCC-CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHh----hCCCceEEE
Q 008516           13 AKVLMVGA-GGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLK----FRPQMSITA   86 (563)
Q Consensus        13 ~~VlvvGa-GgiG~ellknLal~Gv-g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~----~np~v~I~~   86 (563)
                      .||.|+|+ |.+|+.++-.|+..|+ +++.++|.+                 -+..|++..+.-+.+    ..+.+++..
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~-----------------~~~~~~~g~a~Dl~~~~~~~~~~~~~~~   63 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGRE-----------------HSINKLEGLREDIYDALAGTRSDANIYV   63 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECG-----------------GGHHHHHHHHHHHHHHHTTSCCCCEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccch-----------------hhhHhhhcccccchhcccccccCCcccc
Confidence            47999996 9999999999999996 799999832                 122456655555554    234455544


Q ss_pred             eccCCCCCcchHhhcccccEEEEcc
Q 008516           87 HHANVKDPKFNVEFFKQFNVVLNGL  111 (563)
Q Consensus        87 ~~~~i~~~~~~~~~~~~~dvVi~al  111 (563)
                      ...+      +.+-++++|+||.+.
T Consensus        64 ~~~~------d~~~l~~aDvVVitA   82 (145)
T d1hyea1          64 ESDE------NLRIIDESDVVIITS   82 (145)
T ss_dssp             EETT------CGGGGTTCSEEEECC
T ss_pred             CCcc------hHHHhccceEEEEec
Confidence            4322      124578999998863

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.48  E-value=0.018  Score=51.46  Aligned_cols=90  Identities=18%  Similarity=0.272  Sum_probs=53.4

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHH--hhCCCceEEEeccC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVL--KFRPQMSITAHHAN   90 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~--~~np~v~I~~~~~~   90 (563)
                      ++|.|+|+|+.|+.++..|+..|. +++++..+.               |    + + ..+.+.  +.||..........
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~-~V~l~~r~~---------------~----~-~-~~~~i~~~~~~~~~~~~~~~~~   58 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGN-EVRIWGTEF---------------D----T-E-ILKSISAGREHPRLGVKLNGVE   58 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCC-EEEEECCGG---------------G----H-H-HHHHHHTTCCBTTTTBCCCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-EEEEEEecc---------------c----H-H-HHHHHhhhhhhhhhcchhcccc
Confidence            589999999999999999999985 677652110               0    0 0 111111  12222221111111


Q ss_pred             CCCCcchHhhcccccEEEEccCCHHHHHHHHHHH
Q 008516           91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLC  124 (563)
Q Consensus        91 i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c  124 (563)
                      +.......+.++++|+|+.|+-....|..+.++.
T Consensus        59 i~~~~~~~~~~~~ad~Ii~avps~~~~~~~~~l~   92 (180)
T d1txga2          59 IFWPEQLEKCLENAEVVLLGVSTDGVLPVMSRIL   92 (180)
T ss_dssp             EECGGGHHHHHTTCSEEEECSCGGGHHHHHHHHT
T ss_pred             ccccccHHHHHhccchhhcccchhhhHHHHHhhc
Confidence            1111223566889999999998877777776653

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.46  E-value=0.032  Score=47.94  Aligned_cols=31  Identities=32%  Similarity=0.628  Sum_probs=28.4

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCC-CeEEEEe
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGF-QDIHIID   43 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gv-g~I~iiD   43 (563)
                      .||.|||+|.+|+.++-.|+..|. .+|.++|
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~D   32 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLID   32 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEe
Confidence            489999999999999999999997 5799988

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.45  E-value=0.018  Score=47.60  Aligned_cols=31  Identities=26%  Similarity=0.442  Sum_probs=28.6

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .|++|||+|.+|+|+|..|+..|. ++|+++.
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~g~-~Vtlve~   52 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKLGA-QVSVVEA   52 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTC-EEEEECS
T ss_pred             CeEEEECCCHHHHHHHHHHhhccc-ceEEEee
Confidence            689999999999999999999997 6999865

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=95.45  E-value=0.017  Score=54.69  Aligned_cols=65  Identities=25%  Similarity=0.424  Sum_probs=51.0

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      ||+++.++|-| .+|||-++++.|+..|. ++.++|.                   ...+.+.+++.+.+..++.++..+
T Consensus         1 rl~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r-------------------~~~~l~~~~~~~~~~~~~~~~~~~   60 (258)
T d1iy8a_           1 RFTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDV-------------------SSEGLEASKAAVLETAPDAEVLTT   60 (258)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES-------------------CHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC-------------------CHHHHHHHHHHHHhhCCCCeEEEE
Confidence            57888899988 67999999999999997 6888773                   234566677777777778788887


Q ss_pred             ccCCCC
Q 008516           88 HANVKD   93 (563)
Q Consensus        88 ~~~i~~   93 (563)
                      ..++++
T Consensus        61 ~~Dvt~   66 (258)
T d1iy8a_          61 VADVSD   66 (258)
T ss_dssp             ECCTTS
T ss_pred             eccCCC
Confidence            777754

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.028  Score=50.74  Aligned_cols=101  Identities=14%  Similarity=0.101  Sum_probs=60.5

Q ss_pred             cCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        11 ~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      .-+||+|.| .|.+|..+++.|...|. ++++++.+.-.      ..-     .              ..++  ++....
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~-~V~~~~R~~~~------~~~-----~--------------~~~~--~~~~~g   53 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDSSR------LPS-----E--------------GPRP--AHVVVG   53 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCGGG------SCS-----S--------------SCCC--SEEEES
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEEcChhh------ccc-----c--------------cccc--cccccc
Confidence            357899999 58899999999999996 68887643221      100     0              0122  333455


Q ss_pred             CCCCCcchHhhcccccEEEEccCC----------HHHHHHHHHHHHhcCCC-EEEeccccc
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGLDN----------LDARRHVNRLCLAADVP-LVESGTTGF  139 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~alDn----------~~ar~~in~~c~~~~~p-li~~gt~G~  139 (563)
                      ++.+...-.+.+++.|+||+++..          ...-..+-+.+.+++++ +|..++.|.
T Consensus        54 D~~d~~~l~~al~~~d~vi~~~g~~~~~~~~~~~~~~~~~l~~aa~~~~v~r~i~~ss~~~  114 (205)
T d1hdoa_          54 DVLQAADVDKTVAGQDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAFL  114 (205)
T ss_dssp             CTTSHHHHHHHHTTCSEEEECCCCTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECCGGG
T ss_pred             cccchhhHHHHhcCCCEEEEEeccCCchhhhhhhHHHHHHHHHHHHhcCCCeEEEEeeeec
Confidence            554433334567888998887532          12222334455666764 566655543

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=95.37  E-value=0.023  Score=48.93  Aligned_cols=31  Identities=26%  Similarity=0.529  Sum_probs=28.5

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCC-CeEEEEe
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGF-QDIHIID   43 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gv-g~I~iiD   43 (563)
                      .||.|||+|.+|+.++-.|+..|. .+|.++|
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~D   32 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLD   32 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEec
Confidence            489999999999999999999996 6899988

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.34  E-value=0.033  Score=48.35  Aligned_cols=34  Identities=35%  Similarity=0.637  Sum_probs=30.2

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCC-CeEEEEeC
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGF-QDIHIIDM   44 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gv-g~I~iiD~   44 (563)
                      .+.||.|||+|.+|+.++-.|++.|. .+|.++|-
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di   39 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDA   39 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEee
Confidence            45789999999999999999999997 57999883

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.33  E-value=0.0074  Score=53.60  Aligned_cols=34  Identities=32%  Similarity=0.462  Sum_probs=31.4

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ..+||+|||+|..|.+.|..|++.|+..++|+|.
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~   36 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEK   36 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEES
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEe
Confidence            4689999999999999999999999988999874

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=95.31  E-value=0.02  Score=50.65  Aligned_cols=35  Identities=17%  Similarity=0.457  Sum_probs=31.4

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCC-CeEEEEeC
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGF-QDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gv-g~I~iiD~   44 (563)
                      +.+.||.|||+|.+|+.++-.|+..|+ .+|.++|-
T Consensus        18 ~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~   53 (160)
T d1i0za1          18 VPNNKITVVGVGQVGMACAISILGKSLADELALVDV   53 (160)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            467899999999999999999999997 67999873

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=95.28  E-value=0.046  Score=47.33  Aligned_cols=35  Identities=29%  Similarity=0.559  Sum_probs=31.1

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCC-CeEEEEeCC
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMD   45 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gv-g~I~iiD~D   45 (563)
                      ++.||.|||+|.+|+.++-.|+..|+ .+|.++|-|
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~   39 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV   39 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecc
Confidence            46799999999999999999999996 589999843

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.27  E-value=0.013  Score=50.83  Aligned_cols=31  Identities=42%  Similarity=0.560  Sum_probs=28.8

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCC-CeEEEEe
Q 008516           13 AKVLMVGA-GGIGCELLKTLALSGF-QDIHIID   43 (563)
Q Consensus        13 ~~VlvvGa-GgiG~ellknLal~Gv-g~I~iiD   43 (563)
                      +||.|+|| |.+|+.++-.|+..|+ ++|.++|
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiD   33 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYD   33 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEE
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEe
Confidence            68999996 9999999999999997 8999998

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.08  E-value=0.017  Score=50.98  Aligned_cols=34  Identities=35%  Similarity=0.518  Sum_probs=30.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ..+|+|+|+|++|.-.+..+...|..++.++|.+
T Consensus        27 gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~   60 (171)
T d1pl8a2          27 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLS   60 (171)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred             CCEEEEECCCccHHHHHHHHHHcCCceEEeccCC
Confidence            4689999999999999999999999999998843

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.02  E-value=0.0083  Score=53.61  Aligned_cols=77  Identities=16%  Similarity=0.194  Sum_probs=50.5

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe-
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH-   87 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~-   87 (563)
                      ++++++|+|+|+||.+-.++-.|  .+.++|+|+.          |.         ..|++.+++.+....+.-.+... 
T Consensus        15 ~~~~k~vlIlGaGG~arai~~aL--~~~~~i~I~n----------R~---------~~ka~~l~~~~~~~~~~~~~~~~~   73 (177)
T d1nvta1          15 RVKDKNIVIYGAGGAARAVAFEL--AKDNNIIIAN----------RT---------VEKAEALAKEIAEKLNKKFGEEVK   73 (177)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHH--TSSSEEEEEC----------SS---------HHHHHHHHHHHHHHHTCCHHHHEE
T ss_pred             CcCCCEEEEECCcHHHHHHHHHH--ccccceeeeh----------hh---------hhHHHHHHHHHHHhhchhhhhhhh
Confidence            47899999999999999988666  5677998863          22         35777777777654332211111 


Q ss_pred             ccCCCCCcchHhhcccccEEEEccC
Q 008516           88 HANVKDPKFNVEFFKQFNVVLNGLD  112 (563)
Q Consensus        88 ~~~i~~~~~~~~~~~~~dvVi~alD  112 (563)
                      ...+      ......+|+||+|+.
T Consensus        74 ~~~~------~~~~~~~dliIn~tp   92 (177)
T d1nvta1          74 FSGL------DVDLDGVDIIINATP   92 (177)
T ss_dssp             EECT------TCCCTTCCEEEECSC
T ss_pred             hhhh------hhccchhhhhccCCc
Confidence            1111      123567899999875

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.00  E-value=0.012  Score=49.34  Aligned_cols=56  Identities=21%  Similarity=0.335  Sum_probs=40.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhh
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKF   78 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~   78 (563)
                      .+||+|||+|.+|+|+|..|+..|. ++++++...   .-|.|+       .++.-++.+.+.+++.
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~-~Vtli~~~~---~~l~~~-------~~~~~~~~~~~~l~~~   85 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGV-HVSLVETQP---RLMSRA-------APATLADFVARYHAAQ   85 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS---STTTTT-------SCHHHHHHHHHHHHTT
T ss_pred             CCeEEEECcchhHHHHHHHhhcccc-eEEEEeecc---cccccc-------CCHHHHHHHHHHHHHC
Confidence            5789999999999999999999996 799987532   112222       3444566677777665

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.98  E-value=0.013  Score=49.30  Aligned_cols=33  Identities=30%  Similarity=0.355  Sum_probs=29.6

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~   46 (563)
                      .|++|||+|.+|+|+|..|...|. +++|+..+.
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~-~Vtii~~~~   53 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGL-DVTVMVRSI   53 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             CeEEEECCCccHHHHHHHHhhcCC-eEEEEEech
Confidence            589999999999999999999997 799987553

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=94.90  E-value=0.068  Score=46.08  Aligned_cols=73  Identities=22%  Similarity=0.389  Sum_probs=48.7

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCC-CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHH---hhCCCceEEEec
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVL---KFRPQMSITAHH   88 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gv-g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~---~~np~v~I~~~~   88 (563)
                      .||.|||+|.+|+.++-.|++.|+ .+|.++|.+                   +.|++.-+.-++   .+.+..++... 
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~-------------------~~~~~g~a~Dl~~a~~~~~~~~i~~~-   61 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA-------------------KERVEAEVLDMQHGSSFYPTVSIDGS-   61 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS-------------------HHHHHHHHHHHHHTGGGSTTCEEEEE-
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec-------------------cccchhHHHHHHhccccCCCceeecC-
Confidence            589999999999999999999998 479998722                   334443333333   34444444332 


Q ss_pred             cCCCCCcchHhhcccccEEEEccC
Q 008516           89 ANVKDPKFNVEFFKQFNVVLNGLD  112 (563)
Q Consensus        89 ~~i~~~~~~~~~~~~~dvVi~alD  112 (563)
                      ++       .+-.++.|+||.+..
T Consensus        62 ~~-------~~~~~daDvVVitaG   78 (143)
T d1llda1          62 DD-------PEICRDADMVVITAG   78 (143)
T ss_dssp             SC-------GGGGTTCSEEEECCC
T ss_pred             CC-------HHHhhCCcEEEEecc
Confidence            11       234778999998743

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.89  E-value=0.068  Score=45.98  Aligned_cols=31  Identities=32%  Similarity=0.386  Sum_probs=28.4

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCC-CeEEEEe
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGF-QDIHIID   43 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gv-g~I~iiD   43 (563)
                      .||.|||+|.+|+.++-.|+..|. .+|.++|
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~D   32 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVD   32 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEe
Confidence            489999999999999999999986 6899987

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.85  E-value=0.1  Score=45.33  Aligned_cols=31  Identities=42%  Similarity=0.622  Sum_probs=27.4

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCC-eEEEEeC
Q 008516           14 KVLMVGAGGIGCELLKTLALSGFQ-DIHIIDM   44 (563)
Q Consensus        14 ~VlvvGaGgiG~ellknLal~Gvg-~I~iiD~   44 (563)
                      +|+|||+|-+|+.+++.|...|.. +|+.+|.
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~   34 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDI   34 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEEC
Confidence            699999999999999999999974 6777774

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.77  E-value=0.014  Score=49.03  Aligned_cols=31  Identities=19%  Similarity=0.465  Sum_probs=28.7

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +|++|||+|.+|+|++..|+..|. ++||++.
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~-~Vtii~~   54 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGS-KVTVVEF   54 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CeEEEECCCchHHHHHHHHHhhCc-ceeEEEe
Confidence            689999999999999999999997 7999874

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.72  E-value=0.015  Score=48.11  Aligned_cols=30  Identities=30%  Similarity=0.500  Sum_probs=28.0

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEe
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      ++++|||+|.+|+|+|..|+..|. ++||++
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~-~Vtlve   52 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGT-KVTILE   52 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CeEEEECCCccceeeeeeeccccc-EEEEEE
Confidence            689999999999999999999996 699986

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.70  E-value=0.035  Score=47.95  Aligned_cols=92  Identities=20%  Similarity=0.284  Sum_probs=59.5

Q ss_pred             CCcEEEECC-cHHHHHHHHHHHHhCC--CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516           12 GAKVLMVGA-GGIGCELLKTLALSGF--QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        12 ~~~VlvvGa-GgiG~ellknLal~Gv--g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      ..+|.|||+ |-+|.|+++.|...+.  .+|..+               ...+..|+.        +....++..+    
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~---------------~s~~~~Gk~--------i~~~~~~~~~----   54 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLL---------------ASAESAGQR--------MGFAESSLRV----   54 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEE---------------ECTTTTTCE--------EEETTEEEEC----
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEE---------------eecccCCcc--------eeeccccchh----
Confidence            578999997 8899999999987653  345443               234445552        1111111111    


Q ss_pred             cCCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEecc
Q 008516           89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGT  136 (563)
Q Consensus        89 ~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt  136 (563)
                           ...+.+.+.+.|+|+.|+.+..++.+... ....+..+||.+.
T Consensus        55 -----~~~~~~~~~~~d~vf~a~p~~~s~~~~~~-~~~~g~~VID~Ss   96 (144)
T d2hjsa1          55 -----GDVDSFDFSSVGLAFFAAAAEVSRAHAER-ARAAGCSVIDLSG   96 (144)
T ss_dssp             -----EEGGGCCGGGCSEEEECSCHHHHHHHHHH-HHHTTCEEEETTC
T ss_pred             -----ccchhhhhccceEEEecCCcchhhhhccc-cccCCceEEeech
Confidence                 12233457889999999998777777655 4677888888553

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.65  E-value=0.091  Score=46.51  Aligned_cols=33  Identities=27%  Similarity=0.511  Sum_probs=30.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ...|+|+|+||+|.-.+..+...|..+|..+|.
T Consensus        30 g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~   62 (176)
T d1d1ta2          30 GSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDL   62 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCCceEEEecC
Confidence            456999999999999999999999999999983

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.62  E-value=0.068  Score=45.97  Aligned_cols=76  Identities=18%  Similarity=0.167  Sum_probs=47.7

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK   92 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~   92 (563)
                      .||.|||+|-+|+.++++|...|+ ++++.|.                   .++++...  ......    +..      
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~-~v~~~~~-------------------~~~~~~~~--~~~~~~----~~~------   48 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGV-EVVTSLE-------------------GRSPSTIE--RARTVG----VTE------   48 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTC-EEEECCT-------------------TCCHHHHH--HHHHHT----CEE------
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCC-eEEEEcC-------------------chhHHHHH--hhhccc----ccc------
Confidence            479999999999999999999997 4555432                   12222211  111222    110      


Q ss_pred             CCcchHhhcccccEEEEccCCHHHHHHHHHH
Q 008516           93 DPKFNVEFFKQFNVVLNGLDNLDARRHVNRL  123 (563)
Q Consensus        93 ~~~~~~~~~~~~dvVi~alDn~~ar~~in~~  123 (563)
                         ...+..++.|+|+.++.+..+...+...
T Consensus        49 ---~~~e~~~~~diIi~~v~~~~~~~~~~~~   76 (152)
T d1i36a2          49 ---TSEEDVYSCPVVISAVTPGVALGAARRA   76 (152)
T ss_dssp             ---CCHHHHHTSSEEEECSCGGGHHHHHHHH
T ss_pred             ---cHHHHHhhcCeEEEEecCchHHHHHHhh
Confidence               1246788899999998876655444433

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.61  E-value=0.052  Score=45.99  Aligned_cols=75  Identities=28%  Similarity=0.332  Sum_probs=52.1

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516           13 AKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (563)
Q Consensus        13 ~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i   91 (563)
                      .||.|+|+ |-.|..+.+.+...|..-+..+|.+.                                             
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~---------------------------------------------   35 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNG---------------------------------------------   35 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTE---------------------------------------------
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCc---------------------------------------------
Confidence            47999996 99999999888776654333333111                                             


Q ss_pred             CCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccce
Q 008516           92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFL  140 (563)
Q Consensus        92 ~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~  140 (563)
                            .+.+.++|+||+-+- +++-...-+.|.++++|+|- ||+|+.
T Consensus        36 ------~~~~~~~DVvIDFS~-p~~~~~~l~~~~~~~~p~Vi-GTTG~~   76 (128)
T d1vm6a3          36 ------VEELDSPDVVIDFSS-PEALPKTVDLCKKYRAGLVL-GTTALK   76 (128)
T ss_dssp             ------EEECSCCSEEEECSC-GGGHHHHHHHHHHHTCEEEE-CCCSCC
T ss_pred             ------HHHhccCCEEEEecC-HHHHHHHHHHHHhcCCCEEE-EcCCCC
Confidence                  122456899999764 56666777889999999764 555653

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.60  E-value=0.018  Score=48.22  Aligned_cols=56  Identities=21%  Similarity=0.290  Sum_probs=40.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhh
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKF   78 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~   78 (563)
                      .++|+|||+|.+|+|+|..|+..|. ++|+++...-   =|.|       ..++.-++.+.+.+++.
T Consensus        30 ~k~vvViGgG~iG~E~A~~l~~~g~-~Vtlie~~~~---~l~~-------~~d~~~~~~~~~~l~~~   85 (123)
T d1nhpa2          30 VNNVVVIGSGYIGIEAAEAFAKAGK-KVTVIDILDR---PLGV-------YLDKEFTDVLTEEMEAN   85 (123)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSS---TTTT-------TCCHHHHHHHHHHHHTT
T ss_pred             CCEEEEECChHHHHHHHHHhhccce-EEEEEEecCc---cccc-------ccchhhHHHHHHHhhcC
Confidence            5689999999999999999999997 6999875320   0122       23445566666766654

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=94.58  E-value=0.027  Score=50.91  Aligned_cols=97  Identities=14%  Similarity=0.205  Sum_probs=59.9

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC----CCceEEEec
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR----PQMSITAHH   88 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~n----p~v~I~~~~   88 (563)
                      +||.|+|+|+.|+.++..|+..|- ++++.+.|.=....+                   .+  .+.|    |++++   .
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~-~V~l~~r~~~~~~~i-------------------~~--~~~n~~yl~~~~l---~   62 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCR-EVCVWHMNEEEVRLV-------------------NE--KRENVLFLKGVQL---A   62 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEE-EEEEECSCHHHHHHH-------------------HH--HTBCTTTSTTCBC---C
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCC-eEEEEEecHHHHHHH-------------------hh--ccccccccccccc---c
Confidence            469999999999999999999885 688876443111111                   11  1222    22221   1


Q ss_pred             cCCCCCcchHhhcccccEEEEccCCHHHHHHHHHH-------HHhcCCCEEEe
Q 008516           89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL-------CLAADVPLVES  134 (563)
Q Consensus        89 ~~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~-------c~~~~~pli~~  134 (563)
                      .++.-.....+.+++.|+|+.|+-....|..+.+.       ....+.|++.+
T Consensus        63 ~~i~~t~~l~~a~~~ad~iiiavPs~~~~~~~~~~~~~~~~~~~~~~~~ii~~  115 (189)
T d1n1ea2          63 SNITFTSDVEKAYNGAEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVC  115 (189)
T ss_dssp             TTEEEESCHHHHHTTCSCEEECSCHHHHHHHHHHHCHHHHHHHHHHTCCEEEC
T ss_pred             cccccchhhhhccCCCCEEEEcCcHHHHHHHHHHHHhhhhhhhccCCcEEEEE
Confidence            12211111346688999999999877777666554       24567787765

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.58  E-value=0.027  Score=53.20  Aligned_cols=70  Identities=21%  Similarity=0.389  Sum_probs=49.4

Q ss_pred             CCCHHHHHHHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC
Q 008516            1 MVSERQLEAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR   79 (563)
Q Consensus         1 ~~~~~~q~kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~n   79 (563)
                      |++.+.. +|+++.++|-| .+|||.++++.|+..|. ++.++|.+                   +.+.+.+++.+++..
T Consensus         1 m~~~d~m-~L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~-------------------~~~~~~~~~~l~~~g   59 (255)
T d1fmca_           1 MFNSDNL-RLDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDIN-------------------ADAANHVVDEIQQLG   59 (255)
T ss_dssp             CCCGGGG-CCTTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESC-------------------HHHHHHHHHHHHHTT
T ss_pred             CCCCCCC-CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHHcC
Confidence            6665543 57888888887 68999999999999997 68887732                   345666667776654


Q ss_pred             CCceEEEeccCCCC
Q 008516           80 PQMSITAHHANVKD   93 (563)
Q Consensus        80 p~v~I~~~~~~i~~   93 (563)
                      +  ++..+..++++
T Consensus        60 ~--~~~~~~~Dvs~   71 (255)
T d1fmca_          60 G--QAFACRCDITS   71 (255)
T ss_dssp             C--CEEEEECCTTC
T ss_pred             C--cEEEEEccCCC
Confidence            3  45555666643

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.51  E-value=0.015  Score=51.68  Aligned_cols=34  Identities=24%  Similarity=0.373  Sum_probs=30.3

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .+.+|+|+|+|++|...+..+...|...+.++|.
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~   61 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDI   61 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEES
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceeeeecc
Confidence            3567999999999999999999999999998873

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=94.50  E-value=0.02  Score=50.85  Aligned_cols=33  Identities=27%  Similarity=0.487  Sum_probs=28.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ++||-|||+|.+|..++++|+..|+ ++++.|.+
T Consensus         1 ~MkIGvIGlG~MG~~ma~~L~~~G~-~V~~~dr~   33 (178)
T d1pgja2           1 SMDVGVVGLGVMGANLALNIAEKGF-KVAVFNRT   33 (178)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCEEEEEeehHHHHHHHHHHHHCCC-eEEEEECC
Confidence            4689999999999999999999998 47777643

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.48  E-value=0.01  Score=54.02  Aligned_cols=164  Identities=12%  Similarity=0.164  Sum_probs=89.2

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCcc---ccC---CCCCCCCchHH--HHHHHHHHhhCCCceE
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNR---QFL---FRQSHVGQSKA--KVARDAVLKFRPQMSI   84 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnR---qfL---f~~~diGk~Ka--~va~~~l~~~np~v~I   84 (563)
                      .||.|||+|-+|+-++..+++.|. .++++|.|.=......+   +.|   ....-...+.+  +...+.+.+      +
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~------i   77 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLST------I   77 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHT------E
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCC-cEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhh------c
Confidence            689999999999999999999997 68899866522111100   000   00000111110  011111111      1


Q ss_pred             EEeccCCCCCcchHhhcccccEEEEcc-CCHHHHHHHHHHHHh-c-CCCEEEecccccee-eEEEEeCCCCccccccCCC
Q 008516           85 TAHHANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLA-A-DVPLVESGTTGFLG-QVTVHVKGKTECYECQPKP  160 (563)
Q Consensus        85 ~~~~~~i~~~~~~~~~~~~~dvVi~al-Dn~~ar~~in~~c~~-~-~~pli~~gt~G~~G-~v~v~~~~~t~Cy~C~~~~  160 (563)
                      ....       ...+.++++|+|+.|. .+.+....+-+.... . .-..+.+.|.+..- .+.-......-+..-++-.
T Consensus        78 ~~~~-------d~~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hffn  150 (192)
T d1f0ya2          78 ATST-------DAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFN  150 (192)
T ss_dssp             EEES-------CHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECS
T ss_pred             cccc-------hhHhhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccccchhhhhccCHhHEEeecccc
Confidence            1111       1235578999999975 667766655443322 1 22455665554320 0000011222233334445


Q ss_pred             CCCCCCceeeccCCCCchhHHHHHHHHHHHH
Q 008516          161 APKTYPVCTITSTPSKFVHCIVWAKDLLFAK  191 (563)
Q Consensus       161 ~~~~~p~cti~~~p~~~~hci~~a~~~lf~~  191 (563)
                      ++..-|...|...|.+....+..+++ ++..
T Consensus       151 P~~~~~lVEIv~g~~T~~~~i~~~~~-~~~~  180 (192)
T d1f0ya2         151 PVPVMKLVEVIKTPMTSQKTFESLVD-FSKA  180 (192)
T ss_dssp             STTTCCEEEEECCTTCCHHHHHHHHH-HHHH
T ss_pred             ccCcccEEEEcCCCCCCHHHHHHHHH-HHHH
Confidence            56677888998889999999999998 3443

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=94.47  E-value=0.017  Score=50.05  Aligned_cols=94  Identities=17%  Similarity=0.230  Sum_probs=57.8

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK   92 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~   92 (563)
                      +||+|+|+|++|+.++..|+..|. .++++|.+.-....++..                       ..+.......  +.
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~-----------------------~~~~~~~~~~--~~   54 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGH-EVQGWLRVPQPYCSVNLV-----------------------ETDGSIFNES--LT   54 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSEEEEEEE-----------------------CTTSCEEEEE--EE
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCC-ceEEEEcCHHHhhhhccc-----------------------cCCccccccc--cc
Confidence            589999999999999999999997 789988654322221110                       0111111100  00


Q ss_pred             CCcchHhhcccccEEEEccCCHHHHHHHHHHHHh--cCCCEEEe
Q 008516           93 DPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA--ADVPLVES  134 (563)
Q Consensus        93 ~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~--~~~pli~~  134 (563)
                        ....+....+|+|+.++-.......+..+...  .+.+++..
T Consensus        55 --~~~~~~~~~~D~iii~vka~~~~~~~~~l~~~~~~~~~Iv~~   96 (167)
T d1ks9a2          55 --ANDPDFLATSDLLLVTLKAWQVSDAVKSLASTLPVTTPILLI   96 (167)
T ss_dssp             --ESCHHHHHTCSEEEECSCGGGHHHHHHHHHTTSCTTSCEEEE
T ss_pred             --cchhhhhcccceEEEeecccchHHHHHhhccccCcccEEeec
Confidence              01235567899999999877777666665432  23444443

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=94.45  E-value=0.018  Score=47.77  Aligned_cols=32  Identities=38%  Similarity=0.487  Sum_probs=29.3

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +||+|||+|.+|+|++..|...|. ++||++..
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~-~Vtlve~~   53 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGA-KTHLFEMF   53 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CEEEEECCChhhHHHHHHhhcccc-EEEEEeec
Confidence            689999999999999999999997 79998753

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=94.41  E-value=0.016  Score=48.23  Aligned_cols=53  Identities=30%  Similarity=0.412  Sum_probs=38.4

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC-CccCcccCccccCCCCCCCCchHHHHHHHHHHhh
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDM-DTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKF   78 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~-D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~   78 (563)
                      +||+|||+|.+|+|++..|+..|. ++||++. |.+     -|+|       .+.=++.+.+.+++.
T Consensus        23 ~~v~IiGgG~iG~E~A~~l~~~g~-~Vtlv~~~~~i-----l~~~-------d~~~~~~~~~~l~~~   76 (117)
T d1onfa2          23 KKIGIVGSGYIAVELINVIKRLGI-DSYIFARGNRI-----LRKF-------DESVINVLENDMKKN   76 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSSSS-----CTTS-------CHHHHHHHHHHHHHT
T ss_pred             CEEEEECCchHHHHHHHHHHhccc-cceeeehhccc-----cccc-------cHHHHHHHHHHHHhC
Confidence            689999999999999999999996 7999874 332     2221       233356666666654

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.36  E-value=0.055  Score=47.12  Aligned_cols=31  Identities=29%  Similarity=0.463  Sum_probs=27.2

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .||.+||+|-+|..++++|+..|+ ++++.|.
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~-~V~~~d~   31 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVSDR   31 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECS
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCC-eEEEEeC
Confidence            479999999999999999999998 4777664

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.30  E-value=0.038  Score=52.53  Aligned_cols=65  Identities=20%  Similarity=0.329  Sum_probs=46.6

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC-CCceEEE
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR-PQMSITA   86 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~n-p~v~I~~   86 (563)
                      ||+++.++|.| .+|||-++++.|+..|. ++.++|.+                   ..|.+.+++.+++.. +..++..
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~-------------------~~~l~~~~~~l~~~~~~~~~~~~   61 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRS-------------------SERLEETRQIILKSGVSEKQVNS   61 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHTTTCCGGGEEE
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCCCCCceEE
Confidence            57888899988 68999999999999997 78888733                   235555666665543 3345666


Q ss_pred             eccCCCC
Q 008516           87 HHANVKD   93 (563)
Q Consensus        87 ~~~~i~~   93 (563)
                      +..++++
T Consensus        62 ~~~Dvs~   68 (272)
T d1xkqa_          62 VVADVTT   68 (272)
T ss_dssp             EECCTTS
T ss_pred             EEccCCC
Confidence            6666643

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.28  E-value=0.034  Score=53.00  Aligned_cols=65  Identities=25%  Similarity=0.421  Sum_probs=46.8

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC-CCceEEE
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR-PQMSITA   86 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~n-p~v~I~~   86 (563)
                      ||++++++|-| ++|||.++++.|+..|. ++.++|.+                   +.|.+.+++.+.+.. +..++..
T Consensus         1 rL~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~-------------------~~~l~~~~~~i~~~~~~~~~~~~   60 (274)
T d1xhla_           1 RFSGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRN-------------------EDRLEETKQQILKAGVPAEKINA   60 (274)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTCCGGGEEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHHcCCCCcceEE
Confidence            57888899988 67999999999999997 68887732                   345556666666554 3345666


Q ss_pred             eccCCCC
Q 008516           87 HHANVKD   93 (563)
Q Consensus        87 ~~~~i~~   93 (563)
                      +..++++
T Consensus        61 ~~~Dv~~   67 (274)
T d1xhla_          61 VVADVTE   67 (274)
T ss_dssp             EECCTTS
T ss_pred             EEeeCCC
Confidence            6666643

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=94.06  E-value=0.058  Score=47.02  Aligned_cols=32  Identities=28%  Similarity=0.327  Sum_probs=28.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +.+|+|+|+|++|.-.+..+..+|. ++.++|.
T Consensus        27 g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~   58 (170)
T d1e3ja2          27 GTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTAR   58 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCEEEEEcccccchhhHhhHhhhcc-cccccch
Confidence            5789999999999999999999997 7888873

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=94.04  E-value=0.06  Score=51.36  Aligned_cols=36  Identities=19%  Similarity=0.347  Sum_probs=31.7

Q ss_pred             HHHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         8 ~kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .+|+++.++|-| .||||.++++.|+..|. ++.++|.
T Consensus        21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r   57 (294)
T d1w6ua_          21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASR   57 (294)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEEC
Confidence            468889999998 79999999999999995 7888874

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.03  E-value=0.023  Score=47.49  Aligned_cols=33  Identities=30%  Similarity=0.608  Sum_probs=29.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .++++|||+|.+|+|+|..|+..|. ++|+++..
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~-~Vtlv~~~   64 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGY-HVKLIHRG   64 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccc-eEEEEecc
Confidence            4789999999999999999999996 78998754

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.03  E-value=0.024  Score=47.57  Aligned_cols=31  Identities=26%  Similarity=0.373  Sum_probs=28.5

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +|++|||+|.+|+|++..|+..|. ++|+++.
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~-~Vtlv~~   53 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGS-KTSLMIR   53 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCc-EEEEEee
Confidence            689999999999999999999997 6899875

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=94.02  E-value=0.071  Score=50.22  Aligned_cols=62  Identities=24%  Similarity=0.340  Sum_probs=45.8

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      ||+++.++|-| .+|||-++++.|+..|. ++.++|.+                   +.+.+.+++.+++..  .++..+
T Consensus         2 rL~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~-------------------~~~l~~~~~~~~~~g--~~~~~~   59 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMN-------------------REALEKAEASVREKG--VEARSY   59 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHTTT--SCEEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcC--CcEEEE
Confidence            68899999998 57899999999999997 68888742                   345566666666543  355566


Q ss_pred             ccCCC
Q 008516           88 HANVK   92 (563)
Q Consensus        88 ~~~i~   92 (563)
                      ..+++
T Consensus        60 ~~Dv~   64 (260)
T d1zema1          60 VCDVT   64 (260)
T ss_dssp             ECCTT
T ss_pred             EccCC
Confidence            66654

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=94.02  E-value=0.043  Score=48.30  Aligned_cols=33  Identities=24%  Similarity=0.474  Sum_probs=29.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +.+|+|+|+||+|.-.+..+...|..++..+|.
T Consensus        29 GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~   61 (176)
T d2jhfa2          29 GSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDI   61 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             CCEEEEECCCCcHHHHHHHHHHcCCceEEeecC
Confidence            357999999999999999999999999999873

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.96  E-value=0.077  Score=51.12  Aligned_cols=82  Identities=22%  Similarity=0.332  Sum_probs=55.9

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC---CCceE
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR---PQMSI   84 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~n---p~v~I   84 (563)
                      +|+++.++|.| .+|||.++++.|+..|. ++.++|.+                   ..|.+.+++.+....   ...++
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r~-------------------~~~l~~~~~el~~~~~~~~~~~~   68 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRK-------------------LERLKSAADELQANLPPTKQARV   68 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTSCTTCCCCE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhhhccccCceE
Confidence            58889999998 68999999999999997 68888732                   345556666665433   24567


Q ss_pred             EEeccCCCCCcchH-------hhcccccEEEEc
Q 008516           85 TAHHANVKDPKFNV-------EFFKQFNVVLNG  110 (563)
Q Consensus        85 ~~~~~~i~~~~~~~-------~~~~~~dvVi~a  110 (563)
                      ..+..++++...-.       +.+.+.|++|++
T Consensus        69 ~~~~~Dvs~~~~v~~~~~~~~~~~G~iDiLVnn  101 (297)
T d1yxma1          69 IPIQCNIRNEEEVNNLVKSTLDTFGKINFLVNN  101 (297)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             EEEeccCCCHHHHHHHHHHHHHHhCCeEEEEee
Confidence            77777775432211       224456777764

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=93.92  E-value=0.028  Score=47.71  Aligned_cols=33  Identities=21%  Similarity=0.481  Sum_probs=30.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .+||+|||+|.+|+|++..|+..|. ++++++..
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~~g~-~Vtvie~~   67 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIKANM-HVTLLDTA   67 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhhCc-ceeeeeec
Confidence            5789999999999999999999997 69999863

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.89  E-value=0.092  Score=47.67  Aligned_cols=33  Identities=18%  Similarity=0.297  Sum_probs=29.7

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCC-eEEEEeCC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQ-DIHIIDMD   45 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg-~I~iiD~D   45 (563)
                      -||+|||+|.-|...|..|++.|.+ +++|+|..
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~   35 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQ   35 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            3899999999999999999999886 79999855

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=93.89  E-value=0.12  Score=44.49  Aligned_cols=31  Identities=23%  Similarity=0.342  Sum_probs=27.4

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEe
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      .||.+||+|-+|..+++.|...|-.++.+.|
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~   31 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIAN   31 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEEC
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEe
Confidence            4799999999999999999999977777765

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.86  E-value=0.053  Score=51.17  Aligned_cols=65  Identities=17%  Similarity=0.275  Sum_probs=47.5

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC-CCceEEE
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR-PQMSITA   86 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~n-p~v~I~~   86 (563)
                      ||+++.++|.| .+|||.++++.|+..|. ++.++|.+                   ..+.+.+++.+++.. +..++..
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~-------------------~~~l~~~~~~l~~~~~~~~~~~~   61 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRH-------------------AERLEETRQQILAAGVSEQNVNS   61 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTCCGGGEEE
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCCCcCceEE
Confidence            67888888887 68999999999999997 68887732                   245566666666654 3345777


Q ss_pred             eccCCCC
Q 008516           87 HHANVKD   93 (563)
Q Consensus        87 ~~~~i~~   93 (563)
                      +..++++
T Consensus        62 ~~~Dvt~   68 (264)
T d1spxa_          62 VVADVTT   68 (264)
T ss_dssp             EECCTTS
T ss_pred             EEccCCC
Confidence            7766653

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=93.83  E-value=0.028  Score=47.40  Aligned_cols=31  Identities=29%  Similarity=0.572  Sum_probs=28.4

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .+++|||+|.+|+|+|..|+..|. ++|++++
T Consensus        27 ~~vvIiGgG~IG~E~A~~~~~~G~-~Vtive~   57 (125)
T d1ojta2          27 GKLLIIGGGIIGLEMGTVYSTLGS-RLDVVEM   57 (125)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTC-EEEEECS
T ss_pred             CeEEEECCCHHHHHHHHHhhcCCC-EEEEEEe
Confidence            689999999999999999999997 7999864

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=93.81  E-value=0.096  Score=44.82  Aligned_cols=32  Identities=34%  Similarity=0.636  Sum_probs=29.1

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        13 ~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +||.||| +|.+|..++++|...|+ .++++|.+
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~-~V~~~d~~   42 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGY-PISILDRE   42 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTT
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCC-CcEecccc
Confidence            5899999 89999999999999998 68888854

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=93.81  E-value=0.071  Score=47.73  Aligned_cols=90  Identities=16%  Similarity=0.258  Sum_probs=54.7

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCc----hHHHHHHHHHHhhCCCceEEE
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQ----SKAKVARDAVLKFRPQMSITA   86 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk----~Ka~va~~~l~~~np~v~I~~   86 (563)
                      ..+||+|||+|..|.+.|..|++.|. +++|+|.+..    +.-|+.+...--++    .-.+-..+.+++.  ++++..
T Consensus        42 ~~k~V~IIGaGPAGL~AA~~la~~G~-~Vtl~E~~~~----~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~--gV~i~l  114 (179)
T d1ps9a3          42 QKKNLAVVGAGPAGLAFAINAAARGH-QVTLFDAHSE----IGGQFNIAKQIPGKEEFYETLRYYRRMIEVT--GVTLKL  114 (179)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSSS----SCTTHHHHTTSTTCTTHHHHHHHHHHHHHHH--TCEEEE
T ss_pred             CCcEEEEECccHHHHHHHHHHHhhcc-ceEEEeccCc----cCceEEEEEeCcccchHHHHHHHHHHhhhcC--CeEEEe
Confidence            46799999999999999999999997 7999886532    22222111100111    1123344444444  355432


Q ss_pred             eccCCCCCcchHhhcccccEEEEccCC
Q 008516           87 HHANVKDPKFNVEFFKQFNVVLNGLDN  113 (563)
Q Consensus        87 ~~~~i~~~~~~~~~~~~~dvVi~alDn  113 (563)
                       ...++     .+...++|.||.|+..
T Consensus       115 -~~~Vt-----~~~~~~~d~vilAtG~  135 (179)
T d1ps9a3         115 -NHTVT-----ADQLQAFDETILASGI  135 (179)
T ss_dssp             -SCCCC-----SSSSCCSSEEEECCCE
T ss_pred             -CCEEc-----ccccccceeEEEeecC
Confidence             22233     2346789999998764

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=93.73  E-value=0.032  Score=48.10  Aligned_cols=31  Identities=32%  Similarity=0.502  Sum_probs=29.1

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEe
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      .||.|||+|.+|+.++-.|++.|+..+.++|
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D   32 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLD   32 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEEC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEe
Confidence            5899999999999999999999999888887

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.72  E-value=0.2  Score=45.66  Aligned_cols=37  Identities=24%  Similarity=0.503  Sum_probs=31.7

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCC-CeEEEEeCC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGF-QDIHIIDMD   45 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gv-g~I~iiD~D   45 (563)
                      ++++++|+|.| .|-+|.++++.|..-|. .+|+++..+
T Consensus        11 ~m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~   49 (232)
T d2bkaa1          11 RMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRR   49 (232)
T ss_dssp             HHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESS
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecC
Confidence            57889999998 68999999999999885 588888653

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=93.71  E-value=0.027  Score=53.50  Aligned_cols=36  Identities=25%  Similarity=0.656  Sum_probs=32.8

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIE   48 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve   48 (563)
                      -+|+|||+|.+|+.+|..|++.|..+++|+|.+.+.
T Consensus         2 ~dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~~~   37 (305)
T d1pj5a2           2 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLN   37 (305)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCTT
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCCCC
Confidence            379999999999999999999999899999987654

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.71  E-value=0.075  Score=49.85  Aligned_cols=80  Identities=20%  Similarity=0.339  Sum_probs=53.5

Q ss_pred             cCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        11 ~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      .++.++|.| .+|||-++++.|+..|. ++.++|.+                   ..+.+.+++.+.+..+..++..+..
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~~~   61 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWN-------------------LEAGVQCKAALHEQFEPQKTLFIQC   61 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHTTTSCGGGEEEEEC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            456677777 68999999999999997 68888732                   2355556666666666667777777


Q ss_pred             CCCCCcchH-------hhcccccEEEEc
Q 008516           90 NVKDPKFNV-------EFFKQFNVVLNG  110 (563)
Q Consensus        90 ~i~~~~~~~-------~~~~~~dvVi~a  110 (563)
                      ++++...-.       +-+.+.|++|+.
T Consensus        62 Dv~~~~~v~~~~~~~~~~~G~iDilVnn   89 (254)
T d2gdza1          62 DVADQQQLRDTFRKVVDHFGRLDILVNN   89 (254)
T ss_dssp             CTTSHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             ecCCHHHHHHHHHHHHHHcCCcCeeccc
Confidence            775432111       123456777764

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=93.62  E-value=0.17  Score=44.51  Aligned_cols=34  Identities=21%  Similarity=0.367  Sum_probs=30.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ..+|+|+|+||+|--.+..+..+|..+|.++|.+
T Consensus        28 G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~   61 (174)
T d1p0fa2          28 GSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTH   61 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSC
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCCceeeccCCh
Confidence            4569999999999999999999999999998843

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.39  E-value=0.17  Score=43.03  Aligned_cols=37  Identities=24%  Similarity=0.232  Sum_probs=28.9

Q ss_pred             ccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccce
Q 008516          102 KQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFL  140 (563)
Q Consensus       102 ~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~  140 (563)
                      .++|+||+-+. +++-...-+.|.++++|+|- ||+|+.
T Consensus        43 ~~~DvvIDFS~-p~~~~~~~~~~~~~~~~~Vi-GTTG~~   79 (135)
T d1yl7a1          43 GNTEVVIDFTH-PDVVMGNLEFLIDNGIHAVV-GTTGFT   79 (135)
T ss_dssp             TTCSEEEECCC-TTTHHHHHHHHHHTTCEEEE-CCCCCC
T ss_pred             ccCCEEEEccc-HHHHHHHHHHHHhcCCCEEE-eccccc
Confidence            46899999875 56666677889999999876 777864

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=93.35  E-value=0.12  Score=45.69  Aligned_cols=34  Identities=24%  Similarity=0.449  Sum_probs=30.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +.+|+|+|+|++|.-.+..+..+|.+.+.++|.+
T Consensus        29 G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~   62 (174)
T d1e3ia2          29 GSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDIN   62 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCCceeeeeccc
Confidence            4679999999999999999999999999998743

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=93.35  E-value=0.043  Score=45.30  Aligned_cols=55  Identities=15%  Similarity=0.128  Sum_probs=39.3

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCC--eEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhh
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQ--DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKF   78 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg--~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~   78 (563)
                      ++++|||+|.+|+|++..|...|-.  ++|++++..    -+-++       .++.=++.+.+.+++.
T Consensus        21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~----~iL~~-------~d~~~~~~l~~~l~~~   77 (117)
T d1aoga2          21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE----MILRG-------FDHTLREELTKQLTAN   77 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS----SSSTT-------SCHHHHHHHHHHHHHT
T ss_pred             CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc----hhhcc-------cchHHHHHHHHHHHhc
Confidence            6899999999999999999888864  699997521    11122       2334456677777765

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=93.30  E-value=0.041  Score=45.40  Aligned_cols=32  Identities=19%  Similarity=0.228  Sum_probs=28.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .++|+|||.|.+|+|+|..|++.|. ++++++.
T Consensus        22 ~~~vvVvGgG~ig~E~A~~l~~~g~-~vt~i~~   53 (121)
T d1mo9a2          22 GSTVVVVGGSKTAVEYGCFFNATGR-RTVMLVR   53 (121)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcch-hheEeec
Confidence            5789999999999999999999985 6888764

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=93.26  E-value=0.042  Score=47.19  Aligned_cols=35  Identities=31%  Similarity=0.502  Sum_probs=31.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCC-CeEEEEeCCc
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMDT   46 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gv-g~I~iiD~D~   46 (563)
                      .+||+|||+|..|.|++..|...|- .+|+++|.+.
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            5799999999999999999999986 3799998654

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=93.24  E-value=0.18  Score=43.33  Aligned_cols=74  Identities=18%  Similarity=0.233  Sum_probs=48.4

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCC-eEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHh---hCCCceEEEe
Q 008516           13 AKVLMVG-AGGIGCELLKTLALSGFQ-DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLK---FRPQMSITAH   87 (563)
Q Consensus        13 ~~VlvvG-aGgiG~ellknLal~Gvg-~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~---~np~v~I~~~   87 (563)
                      +||.|+| +|.+|+.++-.|++.|+. ++.++|-+.                 ++.+++.-+.-+.+   +....++.. 
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~-----------------~~~~~~g~a~Dl~~~~~~~~~~~i~~-   62 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPD-----------------KEDDTVGQAADTNHGIAYDSNTRVRQ-   62 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGG-----------------GHHHHHHHHHHHHHHHTTTCCCEEEE-
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCC-----------------cccccceeecchhhcccccCCceEee-
Confidence            5899999 699999999999999985 688887321                 12344433334443   444444432 


Q ss_pred             ccCCCCCcchHhhcccccEEEEccC
Q 008516           88 HANVKDPKFNVEFFKQFNVVLNGLD  112 (563)
Q Consensus        88 ~~~i~~~~~~~~~~~~~dvVi~alD  112 (563)
                       ..       .+-+++.|+|+.+..
T Consensus        63 -~~-------~~~~~~aDiVvitaG   79 (142)
T d1o6za1          63 -GG-------YEDTAGSDVVVITAG   79 (142)
T ss_dssp             -CC-------GGGGTTCSEEEECCC
T ss_pred             -CC-------HHHhhhcCEEEEecc
Confidence             21       133689999998643

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=93.15  E-value=0.16  Score=44.91  Aligned_cols=98  Identities=14%  Similarity=0.141  Sum_probs=61.1

Q ss_pred             CCcEEEECCcHHHHH--HHHHHHHh-C--CCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEE
Q 008516           12 GAKVLMVGAGGIGCE--LLKTLALS-G--FQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITA   86 (563)
Q Consensus        12 ~~~VlvvGaGgiG~e--llknLal~-G--vg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~   86 (563)
                      +.||.|||+|++|..  ++..|++. +  .++|.++|-|.=   .            -+..+..+.+.....++..+|..
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~---~------------~~~~~~~~~~~~~~~~~~~~i~~   66 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEE---R------------LDAILTIAKKYVEEVGADLKFEK   66 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHH---H------------HHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCch---H------------HHHHHHHHHHHHHhcCCCeEEEE
Confidence            579999999999864  45555543 2  358999984421   0            01123344555556777788877


Q ss_pred             eccCCCCCcchHhhcccccEEEEccCC--HHHHHHHHHHHHhcCCCE
Q 008516           87 HHANVKDPKFNVEFFKQFNVVLNGLDN--LDARRHVNRLCLAADVPL  131 (563)
Q Consensus        87 ~~~~i~~~~~~~~~~~~~dvVi~alDn--~~ar~~in~~c~~~~~pl  131 (563)
                      ..+.       .+-++++|+|+++..-  .+.+...+.....++.|.
T Consensus        67 ~td~-------~eaL~dad~Vv~~~~~g~~~~~~~~~~i~~~~g~~~  106 (171)
T d1obba1          67 TMNL-------DDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYR  106 (171)
T ss_dssp             ESCH-------HHHHTTCSEEEECCCTTHHHHHHHHHHHHHHTTCTT
T ss_pred             eCCh-------hhcccCCCeEeeecccccccceeeehhcchhhhhcc
Confidence            5432       3557999999997543  445555556666666543

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=93.11  E-value=0.087  Score=49.29  Aligned_cols=108  Identities=19%  Similarity=0.226  Sum_probs=61.6

Q ss_pred             cCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           11 KGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        11 ~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      +++||||.|+ |-+|..+++.|...|. ++++++.+.-              .....|+..+..   .-+++  ++.+..
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~~--------------~~~~~~~~~~~~---~~~~~--v~~v~~   61 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGH-PTYVLFRPEV--------------VSNIDKVQMLLY---FKQLG--AKLIEA   61 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCSCC--------------SSCHHHHHHHHH---HHTTT--CEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCCc--------------ccchhHHHHHhh---hccCC--cEEEEe
Confidence            4689999995 8899999999999995 5666643211              112223222211   12233  344555


Q ss_pred             CCCCCcchHhhcccccEEEEcc------CCH-HHHHHHHHHHHhcCCCEEEecccc
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGL------DNL-DARRHVNRLCLAADVPLVESGTTG  138 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~al------Dn~-~ar~~in~~c~~~~~pli~~gt~G  138 (563)
                      ++.+.......+.+.+.++.+.      .|. .....+...+.....+++...+.|
T Consensus        62 d~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ss~g  117 (312)
T d1qyda_          62 SLDDHQRLVDALKQVDVVISALAGGVLSHHILEQLKLVEAIKEAGNIKRFLPSEFG  117 (312)
T ss_dssp             CSSCHHHHHHHHTTCSEEEECCCCSSSSTTTTTHHHHHHHHHHSCCCSEEECSCCS
T ss_pred             ecccchhhhhhccCcchhhhhhhhcccccchhhhhHHHHHHHHhcCCcEEEEeecc
Confidence            6654444456678888888753      222 233344444444556666654433

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=93.08  E-value=0.13  Score=50.29  Aligned_cols=33  Identities=21%  Similarity=0.313  Sum_probs=28.0

Q ss_pred             CcEEEECCc-HHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           13 AKVLMVGAG-GIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        13 ~~VlvvGaG-giG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +||||.|++ -||+++++.|+..|...+..+|..
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~   34 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKL   34 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            489999855 599999999999998878888854

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=93.06  E-value=0.23  Score=47.56  Aligned_cols=103  Identities=17%  Similarity=0.283  Sum_probs=61.6

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516           13 AKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (563)
Q Consensus        13 ~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i   91 (563)
                      +||||.|+ |-||+.+++.|...|--++..+|...   .+..                       +....-+++.+..++
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~---~~~~-----------------------~~~~~~~~~~i~~Di   54 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGS---DAIS-----------------------RFLNHPHFHFVEGDI   54 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCC---GGGG-----------------------GGTTCTTEEEEECCT
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCC---cchh-----------------------hhccCCCeEEEECcc
Confidence            47999985 56999999999999855788877421   1111                       111122456666666


Q ss_pred             CCCc-chHhhcccccEEEEccCC-----------------HHHHHHHHHHHHhcCCCEEEecccccee
Q 008516           92 KDPK-FNVEFFKQFNVVLNGLDN-----------------LDARRHVNRLCLAADVPLVESGTTGFLG  141 (563)
Q Consensus        92 ~~~~-~~~~~~~~~dvVi~alDn-----------------~~ar~~in~~c~~~~~pli~~gt~G~~G  141 (563)
                      +... ......+++|+|+.+..-                 ...-..+-+.|.+.++..+...+...+|
T Consensus        55 ~~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~~~~~~ss~~~~~  122 (342)
T d2blla1          55 SIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYG  122 (342)
T ss_dssp             TTCSHHHHHHHHHCSEEEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEECCGGGGB
T ss_pred             CChHHHHHHHHhCCCccccccccccccccccCCccccccccccccccccccccccccccccccccccc
Confidence            5432 223356788988884321                 1122344556677777777665555444

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=93.02  E-value=0.3  Score=41.61  Aligned_cols=91  Identities=10%  Similarity=0.050  Sum_probs=57.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i   91 (563)
                      +-+|+|+|.|.+|..+++.|...|. .+++||.|.-                   +.....+..  ..+++.  ...++.
T Consensus         3 knHiII~G~g~~g~~l~~~L~~~~~-~v~vId~d~~-------------------~~~~~~~~~--~~~~~~--vi~Gd~   58 (153)
T d1id1a_           3 KDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPE-------------------DDIKQLEQR--LGDNAD--VIPGDS   58 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCH-------------------HHHHHHHHH--HCTTCE--EEESCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-CEEEEeccch-------------------hHHHHHHHh--hcCCcE--EEEccC
Confidence            4589999999999999999999997 5788875531                   111111211  222333  344555


Q ss_pred             CCC-cchHhhcccccEEEEccCCHHHHHHHHHHHHh
Q 008516           92 KDP-KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA  126 (563)
Q Consensus        92 ~~~-~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~  126 (563)
                      ++. .+...-+++++.||.++++...-..+-..++.
T Consensus        59 ~d~~~L~~a~i~~a~~vi~~~~~d~~n~~~~~~~r~   94 (153)
T d1id1a_          59 NDSSVLKKAGIDRCRAILALSDNDADNAFVVLSAKD   94 (153)
T ss_dssp             TSHHHHHHHTTTTCSEEEECSSCHHHHHHHHHHHHH
T ss_pred             cchHHHHHhccccCCEEEEccccHHHHHHHHHHHHH
Confidence            432 12233457899999999887665555555554

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.87  E-value=0.13  Score=48.18  Aligned_cols=34  Identities=24%  Similarity=0.509  Sum_probs=29.6

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      |+++.++|.| .+|||.++++.|+..|. ++.++|.
T Consensus         3 l~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r   37 (251)
T d1vl8a_           3 LRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASR   37 (251)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            5788899998 67999999999999997 6888874

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=92.82  E-value=0.26  Score=43.35  Aligned_cols=93  Identities=16%  Similarity=0.232  Sum_probs=58.7

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhC-----CCeEEEEeCCccCcccCccccCCCCCCCCchH----HHHHHHHHHhhCCC
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSG-----FQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK----AKVARDAVLKFRPQ   81 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~G-----vg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~K----a~va~~~l~~~np~   81 (563)
                      ++-||.|||+|++|...+-...+..     +++|.++|-|                   +.|    ++.+.......+..
T Consensus         2 k~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did-------------------~~~~~~~~~~~~~~~~~~~~~   62 (167)
T d1u8xx1           2 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDND-------------------KERQDRIAGACDVFIREKAPD   62 (167)
T ss_dssp             CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSC-------------------HHHHHHHHHHHHHHHHHHCTT
T ss_pred             CCceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCC-------------------hhHHHHHHHHHHHHHHHhCCC
Confidence            3568999999998875332222222     3578888733                   334    34455555566666


Q ss_pred             ceEEEeccCCCCCcchHhhcccccEEEEccCC--HHHHHHHHHHHHhcCC
Q 008516           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDN--LDARRHVNRLCLAADV  129 (563)
Q Consensus        82 v~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn--~~ar~~in~~c~~~~~  129 (563)
                      .+++...+       ..+-++++|+||.+..-  .+.+..-..+..++|+
T Consensus        63 ~~~~~~~d-------~~eal~~AD~Vvitag~~~~~g~~rd~~i~~~~Gi  105 (167)
T d1u8xx1          63 IEFAATTD-------PEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGV  105 (167)
T ss_dssp             SEEEEESC-------HHHHHSSCSEEEECCCTTHHHHHHHHHHHHHTTTC
T ss_pred             cceEecCC-------hhhccCCCCEEEECCCcCCCCceeHHHhhchhcCc
Confidence            77776553       24567899999997643  3345555666777776

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=92.82  E-value=0.053  Score=49.24  Aligned_cols=36  Identities=33%  Similarity=0.547  Sum_probs=32.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIE   48 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve   48 (563)
                      .+||+|||+|-.|...|..|+..|. +++|+|.+.+.
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G~-~V~vier~~~~   41 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKGY-SVHILARDLPE   41 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSCTT
T ss_pred             CCcEEEECccHHHHHHHHHHHHCCC-CEEEEeCCCCC
Confidence            4689999999999999999999998 79999977553

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=92.77  E-value=0.18  Score=47.10  Aligned_cols=62  Identities=24%  Similarity=0.424  Sum_probs=45.2

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      |+++.|+|.| ++|||-++++.|+..|..-+.+.|.+.                    +. .+.+.++..++..++..+.
T Consensus         3 l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~--------------------~~-~~~~~~~~~~~~~~~~~~~   61 (254)
T d1sbya1           3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVE--------------------NP-TALAELKAINPKVNITFHT   61 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSC--------------------CH-HHHHHHHHHCTTSEEEEEE
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcc--------------------cH-HHHHHHHhhCCCCCEEEEE
Confidence            6788999998 569999999999999987666544211                    11 1234566778888888887


Q ss_pred             cCCC
Q 008516           89 ANVK   92 (563)
Q Consensus        89 ~~i~   92 (563)
                      .+++
T Consensus        62 ~d~~   65 (254)
T d1sbya1          62 YDVT   65 (254)
T ss_dssp             CCTT
T ss_pred             eecC
Confidence            7774

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=92.55  E-value=0.13  Score=48.20  Aligned_cols=62  Identities=24%  Similarity=0.253  Sum_probs=44.6

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      |.++.++|.| .+|||.++++.|+..|. ++.++|.+                   +.+.+.+++.+++...  ++..+.
T Consensus         8 lenKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~-------------------~~~l~~~~~~l~~~g~--~~~~~~   65 (251)
T d2c07a1           8 GENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRT-------------------QKSCDSVVDEIKSFGY--ESSGYA   65 (251)
T ss_dssp             CSSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESS-------------------HHHHHHHHHHHHTTTC--CEEEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECC-------------------HHHHHHHHHHHHhcCC--cEEEEE
Confidence            5677788888 57999999999999997 68887732                   2456667777766543  455566


Q ss_pred             cCCCC
Q 008516           89 ANVKD   93 (563)
Q Consensus        89 ~~i~~   93 (563)
                      .++++
T Consensus        66 ~Dvt~   70 (251)
T d2c07a1          66 GDVSK   70 (251)
T ss_dssp             CCTTC
T ss_pred             ccCCC
Confidence            66643

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=92.47  E-value=0.17  Score=47.65  Aligned_cols=36  Identities=28%  Similarity=0.477  Sum_probs=31.5

Q ss_pred             HHHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         8 ~kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +||+++.++|.| .+|||-++++.|+..|. ++.++|.
T Consensus         2 nrL~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r   38 (268)
T d2bgka1           2 NRLQDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADI   38 (268)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence            378999999998 67999999999999997 6888874

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=92.47  E-value=0.055  Score=44.83  Aligned_cols=30  Identities=33%  Similarity=0.515  Sum_probs=27.3

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEe
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      ++++|||+|.+|+|+|..|+..|. +++++.
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~G~-~Vtiv~   52 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARLGA-EVTVLE   52 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CeEEEECCChHHHHHHHHHHHcCC-ceEEEE
Confidence            789999999999999999999998 577765

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=92.46  E-value=0.056  Score=47.89  Aligned_cols=31  Identities=35%  Similarity=0.602  Sum_probs=29.0

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        14 ~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +|+|||+|..|...|..|++.|+.+++|++.
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~   32 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEA   32 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEEC
Confidence            6999999999999999999999988999874

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.35  E-value=0.17  Score=48.41  Aligned_cols=102  Identities=15%  Similarity=0.220  Sum_probs=59.1

Q ss_pred             CCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           12 GAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        12 ~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      ++||+|.|+ |-+|+.+++.|...|. +++.+|.-       +...   .            +.+.......+++....+
T Consensus         1 kKKIlVtG~sGfiG~~lv~~L~~~g~-~V~~~d~~-------~~~~---~------------~~~~~~~~~~~~d~~~~~   57 (312)
T d2b69a1           1 RKRILITGGAGFVGSHLTDKLMMDGH-EVTVVDNF-------FTGR---K------------RNVEHWIGHENFELINHD   57 (312)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC-------SSCC---G------------GGTGGGTTCTTEEEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCC-------CcCC---H------------HHHHHhcCCCceEEEehH
Confidence            478999995 5599999999999986 57777731       1110   0            000111222334444444


Q ss_pred             CCCCcchHhhcccccEEEEcc---------CCHHH--------HHHHHHHHHhcCCCEEEecccccee
Q 008516           91 VKDPKFNVEFFKQFNVVLNGL---------DNLDA--------RRHVNRLCLAADVPLVESGTTGFLG  141 (563)
Q Consensus        91 i~~~~~~~~~~~~~dvVi~al---------Dn~~a--------r~~in~~c~~~~~pli~~gt~G~~G  141 (563)
                      +.+     ..+.++|+|+.+.         +++..        -..+-+.|+..++.+|..+|...+|
T Consensus        58 ~~~-----~~~~~~d~VihlAa~~~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~~k~I~~SS~~vy~  120 (312)
T d2b69a1          58 VVE-----PLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYG  120 (312)
T ss_dssp             TTS-----CCCCCCSEEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEGGGGB
T ss_pred             HHH-----HHHcCCCEEEECcccCCchhHHhCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEEChheec
Confidence            322     2345789998742         22111        1234456777888899888776665

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=92.30  E-value=0.11  Score=48.65  Aligned_cols=35  Identities=20%  Similarity=0.390  Sum_probs=30.7

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ||+++.++|.| .+|||-++++.|+..|. ++.++|.
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r   38 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGR   38 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            68888999988 78999999999999997 5888763

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=92.27  E-value=0.21  Score=46.86  Aligned_cols=60  Identities=17%  Similarity=0.275  Sum_probs=43.8

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      |++++++|.| ++|||.++++.|+..|. ++.++|.+                   ..+.+.+++.+++...  +++.+.
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~-------------------~~~l~~~~~~~~~~~~--~~~~~~   61 (258)
T d1ae1a_           4 LKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRN-------------------EKELDECLEIWREKGL--NVEGSV   61 (258)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTC--CEEEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCC--CceEEE
Confidence            5788999998 78999999999999997 79988742                   3455566666666543  344444


Q ss_pred             cCC
Q 008516           89 ANV   91 (563)
Q Consensus        89 ~~i   91 (563)
                      .++
T Consensus        62 ~D~   64 (258)
T d1ae1a_          62 CDL   64 (258)
T ss_dssp             CCT
T ss_pred             eec
Confidence            444

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=92.24  E-value=0.046  Score=47.10  Aligned_cols=31  Identities=39%  Similarity=0.612  Sum_probs=26.7

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +||+|||+|.+|+|++..|.+ | .++||++..
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~-~~Vtvv~~~   31 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-T-YEVTVIDKE   31 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-T-SEEEEECSS
T ss_pred             CeEEEECCcHHHHHHHHHHHc-C-CCEEEEecc
Confidence            589999999999999999976 3 389999754

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=92.22  E-value=0.18  Score=49.16  Aligned_cols=31  Identities=29%  Similarity=0.444  Sum_probs=25.2

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        13 ~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ++|||.| .|=||+.+++.|...|. +++.+|.
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~-~V~~~~r   33 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGY-EVHGIKR   33 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC-EEEEEEC
Confidence            5677888 55599999999999995 6777764

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.17  E-value=0.23  Score=46.26  Aligned_cols=61  Identities=15%  Similarity=0.211  Sum_probs=43.2

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      |..+.++|.| .+|||-++++.|+..|. ++.+.|.+                   +.|.+.+++.++..++  ++..+.
T Consensus         5 l~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~-------------------~~~l~~~~~~~~~~~~--~~~~~~   62 (244)
T d1yb1a_           5 VTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDIN-------------------KHGLEETAAKCKGLGA--KVHTFV   62 (244)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTC--CEEEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCC--cEEEEE
Confidence            5667778877 67899999999999998 68887732                   3455666666766554  455555


Q ss_pred             cCCC
Q 008516           89 ANVK   92 (563)
Q Consensus        89 ~~i~   92 (563)
                      .+++
T Consensus        63 ~Dvs   66 (244)
T d1yb1a_          63 VDCS   66 (244)
T ss_dssp             CCTT
T ss_pred             eeCC
Confidence            5554

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=92.15  E-value=0.053  Score=45.25  Aligned_cols=31  Identities=26%  Similarity=0.533  Sum_probs=28.3

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ++++|||+|-+|+|+|..|+..|. ++|++..
T Consensus        26 ~~~viiG~G~iglE~A~~~~~~G~-~Vtvi~~   56 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVWGRIGS-EVTVVEF   56 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTC-EEEEECS
T ss_pred             CeEEEEccchHHHHHHHHHHhcCC-eEEEEEE
Confidence            589999999999999999999996 7999754

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=92.04  E-value=0.25  Score=39.30  Aligned_cols=84  Identities=20%  Similarity=0.299  Sum_probs=54.9

Q ss_pred             cCCcEEEECCcHHH-HHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           11 KGAKVLMVGAGGIG-CELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        11 ~~~~VlvvGaGgiG-~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      +.+||.++|.||+| +.+|+.|...|. +++--|..        ..           .   ..+.+++.  ++.|...+.
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~-~VsGSD~~--------~~-----------~---~~~~L~~~--Gi~v~~g~~   61 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGY-QISGSDIA--------DG-----------V---VTQRLAQA--GAKIYIGHA   61 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTC-EEEEEESC--------CS-----------H---HHHHHHHT--TCEEEESCC
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCC-EEEEEeCC--------CC-----------h---hhhHHHHC--CCeEEECCc
Confidence            46789999999999 777999999998 57766622        11           1   12344443  455543221


Q ss_pred             CCCCCcchHhhcccccEEEEc----cCCHHHHHHHHHHHHhcCCCEE
Q 008516           90 NVKDPKFNVEFFKQFNVVLNG----LDNLDARRHVNRLCLAADVPLV  132 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~a----lDn~~ar~~in~~c~~~~~pli  132 (563)
                              .+.+.+.|+||-.    .||++..     .|++.++|++
T Consensus        62 --------~~~i~~~d~vV~S~AI~~~npel~-----~A~~~gipii   95 (96)
T d1p3da1          62 --------EEHIEGASVVVVSSAIKDDNPELV-----TSKQKRIPVI   95 (96)
T ss_dssp             --------GGGGTTCSEEEECTTSCTTCHHHH-----HHHHTTCCEE
T ss_pred             --------cccCCCCCEEEECCCcCCCCHHHH-----HHHHcCCCEE
Confidence                    2335678988874    3666643     4688899986

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=91.97  E-value=0.21  Score=47.00  Aligned_cols=63  Identities=16%  Similarity=0.237  Sum_probs=45.8

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      |+++.++|.| .+|||.++++.|+..|. ++.++|.+.                  +.+++.+++.+++..+  ++..+.
T Consensus         5 L~gK~alITGas~GIG~aia~~la~~G~-~Vv~~~r~~------------------~~~~~~~~~~~~~~g~--~~~~~~   63 (261)
T d1geea_           5 LEGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSK------------------EDEANSVLEEIKKVGG--EAIAVK   63 (261)
T ss_dssp             GTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSC------------------HHHHHHHHHHHHHTTC--EEEEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCc------------------HHHHHHHHHHHHhcCC--cEEEEE
Confidence            7888888887 68999999999999997 677776321                  2356666777776543  566666


Q ss_pred             cCCCC
Q 008516           89 ANVKD   93 (563)
Q Consensus        89 ~~i~~   93 (563)
                      .++++
T Consensus        64 ~Dvt~   68 (261)
T d1geea_          64 GDVTV   68 (261)
T ss_dssp             CCTTS
T ss_pred             ccCCC
Confidence            66654

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=91.96  E-value=0.066  Score=49.90  Aligned_cols=56  Identities=21%  Similarity=0.204  Sum_probs=35.8

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHhcCccccceee--ecccccccccccccCCCCCCCCcccCC
Q 008516          375 HAVATTNAIIAGLIVIEAIKVLLKDTDKYRMTY--CLEHITKKMLLMPVEPYEPNKSCYVCS  434 (563)
Q Consensus       375 PAIATTnAiVAGl~vlE~~K~l~~~~~~~r~~f--~~~~~~~~~~~~p~~~~~pn~~C~vC~  434 (563)
                      +.+++++++||++++.|++|+|.|..+...+.+  ++.....   + ..-.-+++|+|++|+
T Consensus       190 g~~~p~~~~v~~~~a~e~ik~l~g~~~~~~~~~~~~d~~~~~---~-~~~~~~~~~~C~vCG  247 (247)
T d1jw9b_         190 GVMAPLIGVIGSLQAMEAIKMLAGYGKPASGKIVMYDAMTCQ---F-REMKLMRNPGCEVCG  247 (247)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHHHHTCSCCCBSEEEEEETTTTE---E-EEEECCCCTTCTTTC
T ss_pred             CcccccchhHHHHHHHHHHHHHhcCCCcCcCcEEEEECCCCE---E-EEEecCcCcCCCCCC
Confidence            457788999999999999999998654322222  2221111   0 111235789999996

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=91.71  E-value=0.47  Score=45.00  Aligned_cols=108  Identities=16%  Similarity=0.309  Sum_probs=63.4

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCC-----CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEE
Q 008516           13 AKVLMVG-AGGIGCELLKTLALSGF-----QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITA   86 (563)
Q Consensus        13 ~~VlvvG-aGgiG~ellknLal~Gv-----g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~   86 (563)
                      +||+|.| .|-||+++++.|...|.     .++..+|.-+....-.                     .+.......+++.
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~---------------------~~~~~~~~~~~~~   59 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRA---------------------NLAPVDADPRLRF   59 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGG---------------------GGGGGTTCTTEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHh---------------------HhhhhhcCCCeEE
Confidence            4899998 67899999999999774     3567776443221111                     0111122234555


Q ss_pred             eccCCCCCcchHhhcccccEEEEcc-C----------------CHHHHHHHHHHHHhcCC-CEEEecccccee
Q 008516           87 HHANVKDPKFNVEFFKQFNVVLNGL-D----------------NLDARRHVNRLCLAADV-PLVESGTTGFLG  141 (563)
Q Consensus        87 ~~~~i~~~~~~~~~~~~~dvVi~al-D----------------n~~ar~~in~~c~~~~~-pli~~gt~G~~G  141 (563)
                      +..+.............+|+|+.+. .                |...-..+-+.|.++++ .+|.+++...+|
T Consensus        60 ~~~d~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~I~~Ss~~~yg  132 (322)
T d1r6da_          60 VHGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYG  132 (322)
T ss_dssp             EECCTTCHHHHHHHTTTCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGC
T ss_pred             EEeccccchhhhccccccceEEeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCceEEEeecceeec
Confidence            5555544333445566777777642 1                22222345556777775 488888877766

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=91.66  E-value=0.16  Score=47.62  Aligned_cols=35  Identities=29%  Similarity=0.534  Sum_probs=30.5

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ||++++++|.| .+|||-++++.|+..|. ++.++|.
T Consensus         2 ~L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r   37 (256)
T d1k2wa_           2 RLDGKTALITGSARGIGRAFAEAYVREGA-RVAIADI   37 (256)
T ss_dssp             TTTTEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            47888999998 58999999999999997 6888874

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.60  E-value=0.19  Score=47.18  Aligned_cols=61  Identities=21%  Similarity=0.277  Sum_probs=42.8

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      |++++++|.| .+|||-++++.|+..|. ++.++|.+                   +.+.+.+++.+.+..  .++..+.
T Consensus         6 LkgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~-------------------~~~l~~~~~~~~~~~--~~~~~~~   63 (259)
T d1xq1a_           6 LKAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARN-------------------EYELNECLSKWQKKG--FQVTGSV   63 (259)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTT--CCEEEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcC--CceEEEe
Confidence            5788888887 68899999999999998 68887743                   234555555555543  2455555


Q ss_pred             cCCC
Q 008516           89 ANVK   92 (563)
Q Consensus        89 ~~i~   92 (563)
                      .+++
T Consensus        64 ~Dv~   67 (259)
T d1xq1a_          64 CDAS   67 (259)
T ss_dssp             CCTT
T ss_pred             ccCC
Confidence            5553

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=91.57  E-value=0.11  Score=45.16  Aligned_cols=33  Identities=24%  Similarity=0.488  Sum_probs=29.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ..+|+|+|+||+|.-.+..+..+|...+..+|.
T Consensus        29 G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~   61 (176)
T d2fzwa2          29 GSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDI   61 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECS
T ss_pred             CCEEEEecchhHHHHHHHHHHHHhcCceEEEcc
Confidence            457999999999999999999999999988874

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.55  E-value=0.18  Score=44.02  Aligned_cols=91  Identities=13%  Similarity=0.153  Sum_probs=51.3

Q ss_pred             CcEEEECCcHHHHHHHHHHHH-----hCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhh-CCCceEEE
Q 008516           13 AKVLMVGAGGIGCELLKTLAL-----SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKF-RPQMSITA   86 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal-----~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~-np~v~I~~   86 (563)
                      .||.|||+|++|...+-...+     ..+++|.++|-                   ...|++.+.+..... ....++..
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Di-------------------d~~k~~~~~d~~~~~~~~~~~~~~   61 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDI-------------------DEEKQKIVVDFVKRLVKDRFKVLI   61 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECS-------------------CHHHHHHHHHHHHHHHTTSSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEec-------------------CcHHHHHHHHHHHhhhccCceEEE
Confidence            479999999888666533222     22578999873                   334555544444432 22334433


Q ss_pred             eccCCCCCcchHhhcccccEEEEccCCH--HHHHHHHHHHHhcCC
Q 008516           87 HHANVKDPKFNVEFFKQFNVVLNGLDNL--DARRHVNRLCLAADV  129 (563)
Q Consensus        87 ~~~~i~~~~~~~~~~~~~dvVi~alDn~--~ar~~in~~c~~~~~  129 (563)
                      ..       ...+-+++.|+||.+....  +.+.....+-.++++
T Consensus        62 t~-------~~~~~l~~aDvVVita~~~~~~~~~r~~~i~~~~~i   99 (162)
T d1up7a1          62 SD-------TFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGL   99 (162)
T ss_dssp             CS-------SHHHHHTTCSEEEECCCTTHHHHHHHHHHGGGGGTC
T ss_pred             ec-------CcccccCCCCEEEEecccCCCCCcchHhhhhhhcCe
Confidence            21       1356789999999986543  233333333344444

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=91.53  E-value=0.31  Score=45.37  Aligned_cols=59  Identities=29%  Similarity=0.412  Sum_probs=41.5

Q ss_pred             CcE-EEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           13 AKV-LMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        13 ~~V-lvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      +|| +|-| .+|||-++++.|+..|. ++.+.|.+                   +.+.+.+++.+++..  .++..+..+
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga-~V~~~~r~-------------------~~~l~~~~~~i~~~g--~~~~~~~~D   58 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGF-AVAIADYN-------------------DATAKAVASEINQAG--GHAVAVKVD   58 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTT--CCEEEEECC
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcC--CcEEEEEee
Confidence            466 5556 67999999999999997 68888732                   345666677776654  356666666


Q ss_pred             CCC
Q 008516           91 VKD   93 (563)
Q Consensus        91 i~~   93 (563)
                      +++
T Consensus        59 v~~   61 (255)
T d1gega_          59 VSD   61 (255)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            654

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.39  E-value=0.076  Score=49.80  Aligned_cols=33  Identities=30%  Similarity=0.420  Sum_probs=29.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +.+|+|||+|..|..+|..|++.|+ +++|+|..
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~-~v~vlE~~   34 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGI-DNVILERQ   34 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTC-CEEEECSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEeCC
Confidence            5689999999999999999999999 78998754

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=91.33  E-value=0.15  Score=47.81  Aligned_cols=35  Identities=20%  Similarity=0.457  Sum_probs=29.8

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      |++++++|.| .+|||.++++.|+..|. ++.++|.+
T Consensus         7 l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~   42 (260)
T d1h5qa_           7 FVNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRS   42 (260)
T ss_dssp             CTTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            5678888887 67899999999999998 68888854

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=91.25  E-value=0.11  Score=45.12  Aligned_cols=35  Identities=29%  Similarity=0.500  Sum_probs=29.1

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCC-eEEEEeCC
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQ-DIHIIDMD   45 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg-~I~iiD~D   45 (563)
                      ++.+|+|||+|.+|+|++..|...|.. .+++++..
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~   37 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDA   37 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCc
Confidence            367899999999999999999999985 45555543

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=91.17  E-value=0.11  Score=44.55  Aligned_cols=34  Identities=32%  Similarity=0.475  Sum_probs=29.6

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCC-CeEEEEeCCc
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMDT   46 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gv-g~I~iiD~D~   46 (563)
                      .||.|||+|.+|+.++-.|+..|. .+|.++|.+.
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~   36 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   36 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccC
Confidence            589999999999999999999997 4799998443

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=91.07  E-value=0.082  Score=48.15  Aligned_cols=32  Identities=22%  Similarity=0.488  Sum_probs=29.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .+||+|||+|.-|...|..|++.|+ +++|+|.
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~-~V~vlE~   32 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGL-NVTVFEA   32 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSC-EEEEECS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC-CEEEEeC
Confidence            4789999999999999999999998 7999873

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.03  E-value=0.098  Score=45.17  Aligned_cols=48  Identities=23%  Similarity=0.323  Sum_probs=36.8

Q ss_pred             CcEEEE-CCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC
Q 008516           13 AKVLMV-GAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP   80 (563)
Q Consensus        13 ~~Vlvv-GaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np   80 (563)
                      +||.|+ |+|++|..+++.|+..|. ++++.+.|                   ..|++.+.+.+....+
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~-~V~l~~R~-------------------~e~~~~l~~~i~~~~~   49 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGH-EIVVGSRR-------------------EEKAEAKAAEYRRIAG   49 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESS-------------------HHHHHHHHHHHHHHHS
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCC
Confidence            479999 799999999999999997 57776532                   3567777777765443

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.01  E-value=0.23  Score=46.19  Aligned_cols=35  Identities=23%  Similarity=0.483  Sum_probs=30.7

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ||+++.++|-| .+|||.++++.|+..|. ++.++|.
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r   38 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDI   38 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            57888999988 58999999999999998 6888874

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.00  E-value=0.21  Score=46.67  Aligned_cols=36  Identities=28%  Similarity=0.492  Sum_probs=31.7

Q ss_pred             HHHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         8 ~kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .||+++.++|-| .+|||-++++.|+..|. ++.+.|.
T Consensus         2 ~rl~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r   38 (250)
T d1ydea1           2 TRYAGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDK   38 (250)
T ss_dssp             CTTTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            378899999998 58999999999999997 6888874

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.87  E-value=0.32  Score=47.58  Aligned_cols=120  Identities=23%  Similarity=0.191  Sum_probs=65.5

Q ss_pred             CCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCC---CCCC--CCchHHHHHHHHHHhhCCCceEE
Q 008516           12 GAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLF---RQSH--VGQSKAKVARDAVLKFRPQMSIT   85 (563)
Q Consensus        12 ~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf---~~~d--iGk~Ka~va~~~l~~~np~v~I~   85 (563)
                      .+||||.|+ |=||+++++.|...|. .++.+|       ||.|...-   +...  -..+..+.+.+.-...++  +++
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~-~V~~iD-------nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~   70 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNY-EVCIVD-------NLVRRLFDHQLGLESLTPIASIHDRISRWKALTGK--SIE   70 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE-------CCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCC--CCE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEe-------cCCcccccccccccccccccchHHHHHHHHhhcCC--CcE
Confidence            479999995 5599999999999995 688888       44432110   0000  011222333222222333  455


Q ss_pred             EeccCCCCCcchHhhcc--cccEEEEcc---------CC-----------HHHHHHHHHHHHhcC--CCEEEecccccee
Q 008516           86 AHHANVKDPKFNVEFFK--QFNVVLNGL---------DN-----------LDARRHVNRLCLAAD--VPLVESGTTGFLG  141 (563)
Q Consensus        86 ~~~~~i~~~~~~~~~~~--~~dvVi~al---------Dn-----------~~ar~~in~~c~~~~--~pli~~gt~G~~G  141 (563)
                      .+..++++...-...++  ++|+|+...         .+           +..-..+-+.|++++  +.++.+++...+|
T Consensus        71 ~~~~Dl~d~~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~~~  150 (393)
T d1i24a_          71 LYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYG  150 (393)
T ss_dssp             EEESCTTSHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGC
T ss_pred             EEEccCCCHHHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeecccccccc
Confidence            56667765433344554  459999842         11           111223334566655  3467777766655

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.81  E-value=0.35  Score=45.30  Aligned_cols=60  Identities=20%  Similarity=0.282  Sum_probs=43.8

Q ss_pred             CCcEEEE--CCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           12 GAKVLMV--GAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        12 ~~~Vlvv--GaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      .+||.||  |.+|||-++++.|+..|-.++.+.+.+                   ..|.+.+++.+++..+.+  ..+..
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~-------------------~~~~~~~~~~l~~~~~~~--~~~~~   60 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARD-------------------VTRGQAAVQQLQAEGLSP--RFHQL   60 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESS-------------------HHHHHHHHHHHHHTTCCC--EEEEC
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECC-------------------HHHHHHHHHHHHhcCCcE--EEEEE
Confidence            5789888  689999999999998855678887632                   357777888888776654  34444


Q ss_pred             CCC
Q 008516           90 NVK   92 (563)
Q Consensus        90 ~i~   92 (563)
                      +++
T Consensus        61 Dvs   63 (275)
T d1wmaa1          61 DID   63 (275)
T ss_dssp             CTT
T ss_pred             ecC
Confidence            553

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=90.75  E-value=0.11  Score=46.59  Aligned_cols=37  Identities=32%  Similarity=0.441  Sum_probs=32.9

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~   46 (563)
                      .|.+++|.|+|.|.||.++++.+...|+ ++...|.+.
T Consensus        39 ~l~gk~vgIiG~G~IG~~va~~l~~~g~-~v~~~d~~~   75 (181)
T d1qp8a1          39 LIQGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRTP   75 (181)
T ss_dssp             CCTTCEEEEESCSTHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             cccCceEEEeccccccccceeeeecccc-ccccccccc
Confidence            3788999999999999999999999999 788888653

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=90.59  E-value=0.46  Score=44.16  Aligned_cols=59  Identities=17%  Similarity=0.375  Sum_probs=41.5

Q ss_pred             CcE-EEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           13 AKV-LMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        13 ~~V-lvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      .|| +|-| ++|||.++++.|+..|. ++.++|.+                   +.+.+.+++.+++..  .++..+..+
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga-~V~i~~r~-------------------~~~l~~~~~~l~~~g--~~~~~~~~D   59 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGL-RVFVCARG-------------------EEGLRTTLKELREAG--VEADGRTCD   59 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTT--CCEEEEECC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcC--CcEEEEEee
Confidence            355 4555 78999999999999997 68887732                   345666677776654  356666666


Q ss_pred             CCC
Q 008516           91 VKD   93 (563)
Q Consensus        91 i~~   93 (563)
                      +++
T Consensus        60 vs~   62 (257)
T d2rhca1          60 VRS   62 (257)
T ss_dssp             TTC
T ss_pred             cCC
Confidence            654

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=90.51  E-value=0.14  Score=44.79  Aligned_cols=33  Identities=27%  Similarity=0.454  Sum_probs=28.0

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCC-eEEEEe
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQ-DIHIID   43 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg-~I~iiD   43 (563)
                      ++++|+|||.|.+|+|++..|.+.|.. .|+++.
T Consensus         2 m~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~   35 (183)
T d1d7ya1           2 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVG   35 (183)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred             CCCCEEEECccHHHHHHHHHHHhcCCceEEEEEe
Confidence            467899999999999999999999975 455554

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.47  E-value=0.47  Score=45.36  Aligned_cols=32  Identities=34%  Similarity=0.339  Sum_probs=26.6

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        12 ~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      -++|||.| .|-||+.+++.|...|. ++..+|.
T Consensus        16 ~k~iLVTG~tGfIGs~lv~~L~~~g~-~V~~~d~   48 (341)
T d1sb8a_          16 PKVWLITGVAGFIGSNLLETLLKLDQ-KVVGLDN   48 (341)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEEC
Confidence            36788877 78899999999999997 5777773

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=90.46  E-value=0.22  Score=46.50  Aligned_cols=34  Identities=32%  Similarity=0.558  Sum_probs=27.3

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      |+++.++|.| .+|||.++++.|+..|. ++.++|.
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r   36 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGF   36 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECC
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            4566666666 78899999999999997 6888763

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.44  E-value=0.23  Score=46.06  Aligned_cols=35  Identities=26%  Similarity=0.502  Sum_probs=30.4

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      |++++++|.| .+|||.++++.|+..|. ++.++|.+
T Consensus         5 L~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~   40 (244)
T d1pr9a_           5 LAGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRT   40 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECC
Confidence            6788999998 78999999999999997 68888743

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=90.44  E-value=0.11  Score=47.50  Aligned_cols=32  Identities=19%  Similarity=0.294  Sum_probs=29.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ..||+|||+|..|..+|..|++.|+ +++|+|.
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G~-~v~v~Er   35 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAGV-DVDVYER   35 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCC-CEEEEeC
Confidence            4689999999999999999999999 7999984

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=90.42  E-value=0.16  Score=47.39  Aligned_cols=37  Identities=32%  Similarity=0.564  Sum_probs=32.0

Q ss_pred             HHHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         8 ~kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      |||+++.++|-| ++|||-++++.|+..|. ++.+.|.+
T Consensus         1 qrL~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~~~   38 (247)
T d2ew8a1           1 QRLKDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLV   38 (247)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            478999999998 57999999999999998 68888754

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=90.37  E-value=0.24  Score=43.29  Aligned_cols=101  Identities=17%  Similarity=0.237  Sum_probs=57.9

Q ss_pred             CCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           12 GAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        12 ~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      ..||.|+|+ |-+|.++++.+....  .+.|+  -.++..+-    -+-..|+|.-        ....++.+.+..   +
T Consensus         4 ~ikI~i~Ga~GrMG~~i~~~i~~~~--~~~lv--~~~~~~~~----~~~g~d~~~~--------~~~~~~~~~~~~---~   64 (162)
T d1diha1           4 NIRVAIAGAGGRMGRQLIQAALALE--GVQLG--AALEREGS----SLLGSDAGEL--------AGAGKTGVTVQS---S   64 (162)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHST--TEECC--CEECCTTC----TTCSCCTTCS--------SSSSCCSCCEES---C
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCC--CCEEE--EEEecccc----hhccchhhhh--------hccccCCceeec---c
Confidence            458999996 999999999888753  22222  01110000    0112233320        000112222211   1


Q ss_pred             CCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccc
Q 008516           91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGF  139 (563)
Q Consensus        91 i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~  139 (563)
                            .+..+..+|+||+-+. +++-...-+.|.++++|+|-+ |+|+
T Consensus        65 ------~~~~~~~~DViIDFs~-p~~~~~~~~~a~~~~~~~ViG-TTG~  105 (162)
T d1diha1          65 ------LDAVKDDFDVFIDFTR-PEGTLNHLAFCRQHGKGMVIG-TTGF  105 (162)
T ss_dssp             ------STTTTTSCSEEEECSC-HHHHHHHHHHHHHTTCEEEEC-CCCC
T ss_pred             ------HHHHhcccceEEEecc-HHHHHHHHHHHHhccceeEEe-cCCC
Confidence                  1345678999999865 566666678999999999876 5665

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=90.36  E-value=0.12  Score=46.87  Aligned_cols=34  Identities=24%  Similarity=0.365  Sum_probs=30.3

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEe
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      .|.+++|.|||.|.||.++++.|...|+ ++...|
T Consensus        40 el~gk~vgIiG~G~IG~~va~~l~~fg~-~V~~~d   73 (197)
T d1j4aa1          40 EVRDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYD   73 (197)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTC-EEEEEC
T ss_pred             cccCCeEEEecccccchhHHHhHhhhcc-cccccC
Confidence            3789999999999999999999998888 577766

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=90.33  E-value=0.45  Score=40.66  Aligned_cols=70  Identities=14%  Similarity=0.272  Sum_probs=45.1

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK   92 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~   92 (563)
                      +||.+||+|-+|+.+++.|...|. ++++.|.+                   ..|++.+++..   .  +.       +.
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~-~i~v~~r~-------------------~~~~~~l~~~~---g--~~-------~~   48 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPH-ELIISGSS-------------------LERSKEIAEQL---A--LP-------YA   48 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSC-EEEEECSS-------------------HHHHHHHHHHH---T--CC-------BC
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCC-eEEEEcCh-------------------HHhHHhhcccc---c--ee-------ee
Confidence            479999999999999999998873 56665422                   13444333322   1  11       11


Q ss_pred             CCcchHhhcccccEEEEccCCHHH
Q 008516           93 DPKFNVEFFKQFNVVLNGLDNLDA  116 (563)
Q Consensus        93 ~~~~~~~~~~~~dvVi~alDn~~a  116 (563)
                        ....+..++.|+|+-|+.....
T Consensus        49 --~~~~~~~~~~dvIilavkp~~~   70 (152)
T d2ahra2          49 --MSHQDLIDQVDLVILGIKPQLF   70 (152)
T ss_dssp             --SSHHHHHHTCSEEEECSCGGGH
T ss_pred             --chhhhhhhccceeeeecchHhH
Confidence              1235668899999999864333

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=90.24  E-value=0.48  Score=44.20  Aligned_cols=34  Identities=26%  Similarity=0.493  Sum_probs=29.2

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      |+++.++|-| .+|||.++++.|+..|. ++.+.|.
T Consensus         6 L~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r   40 (259)
T d2ae2a_           6 LEGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSR   40 (259)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            6788888888 57999999999999997 6888774

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.21  E-value=0.49  Score=45.60  Aligned_cols=33  Identities=21%  Similarity=0.328  Sum_probs=28.6

Q ss_pred             cCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        11 ~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +|+||||.| .|=||+.+++.|...|. +++++|.
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~-~V~~~d~   47 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGH-YVIASDW   47 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeC
Confidence            589999998 78899999999999996 6777774

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.18  E-value=0.12  Score=47.28  Aligned_cols=33  Identities=21%  Similarity=0.376  Sum_probs=30.3

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .+|+|||+|..|+.++..|++.|+..++|++..
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~   34 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESS   34 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCC
Confidence            479999999999999999999999999998853

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=90.08  E-value=0.15  Score=44.85  Aligned_cols=34  Identities=24%  Similarity=0.311  Sum_probs=30.6

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ...+|+|+|+|++|...+..+...|..+|.++|.
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~   61 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAG   61 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEES
T ss_pred             CCCEEEEECCCccchhheeccccccccccccccc
Confidence            3578999999999999999999999999999884

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=90.06  E-value=0.13  Score=47.68  Aligned_cols=42  Identities=26%  Similarity=0.396  Sum_probs=37.7

Q ss_pred             HHHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCc
Q 008516            8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEV   49 (563)
Q Consensus         8 ~kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~   49 (563)
                      .+|++.||+++|+|+-|+-+++.|...|.+++.++|.+-+=.
T Consensus        22 ~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~   63 (222)
T d1vl6a1          22 KKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILN   63 (222)
T ss_dssp             CCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECC
T ss_pred             CChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEE
Confidence            368899999999999999999999999999999999775533

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=89.87  E-value=0.13  Score=47.57  Aligned_cols=34  Identities=21%  Similarity=0.365  Sum_probs=30.7

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccC
Q 008516           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIE   48 (563)
Q Consensus        14 ~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve   48 (563)
                      .|+|||+|..|+.+|..|++.|. +++|+|.+.+.
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~-~V~vlE~~~~~   39 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENK-NTALFESGTMG   39 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSTT
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCCC
Confidence            59999999999999999999995 79999987654

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=89.81  E-value=0.17  Score=44.14  Aligned_cols=100  Identities=14%  Similarity=0.237  Sum_probs=51.3

Q ss_pred             CCcEEEECCcHHHHHH-HHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           12 GAKVLMVGAGGIGCEL-LKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        12 ~~~VlvvGaGgiG~el-lknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      +.||.|||+|++|.++ .+.|-.....++..+=               ..+.-|+  ..   ++.++.+  +.+  ....
T Consensus         4 kirvaIIGaG~ig~~~~~~~l~~~~~~el~ava---------------s~~~~~~--~~---~~a~~~~--i~~--~~~~   59 (157)
T d1nvmb1           4 KLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMV---------------GIDAASD--GL---ARAQRMG--VTT--TYAG   59 (157)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEE---------------CSCTTCH--HH---HHHHHTT--CCE--ESSH
T ss_pred             CcEEEEEcCcHHHHHHHHHHHhhCCcceEEEEE---------------ecchhcc--ch---hhhhhcC--Ccc--cccc
Confidence            4589999999999975 4666555555555541               1000111  11   1112222  111  1111


Q ss_pred             CCCCcchHhhcccccEEEEccCCHH-HHHHHHHHHHhcCCCEEEecc
Q 008516           91 VKDPKFNVEFFKQFNVVLNGLDNLD-ARRHVNRLCLAADVPLVESGT  136 (563)
Q Consensus        91 i~~~~~~~~~~~~~dvVi~alDn~~-ar~~in~~c~~~~~pli~~gt  136 (563)
                      +.+ .....-+.+.|+|+.|+.+.. +.....-...+.|+.+|+-..
T Consensus        60 ~d~-l~~~~~~~~iDiVf~ATpag~h~~~~~~~~aa~~G~~VID~s~  105 (157)
T d1nvmb1          60 VEG-LIKLPEFADIDFVFDATSASAHVQNEALLRQAKPGIRLIDLTP  105 (157)
T ss_dssp             HHH-HHHSGGGGGEEEEEECSCHHHHHHHHHHHHHHCTTCEEEECST
T ss_pred             eee-eeecccccccCEEEEcCCchhHHHhHHHHHHHHcCCEEEEccc
Confidence            100 001112567899999987633 222223334677888888765

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=89.81  E-value=0.83  Score=38.93  Aligned_cols=75  Identities=20%  Similarity=0.256  Sum_probs=45.7

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHh-CC-CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           13 AKVLMVG-AGGIGCELLKTLALS-GF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        13 ~~VlvvG-aGgiG~ellknLal~-Gv-g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      .||.|+| +|.+|+.++-.|+.. |+ .+|.++|.+                    ++++..+.-+.+............
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~--------------------~~~~g~a~Dl~h~~~~~~~~~~~~   60 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIA--------------------PVTPGVAVDLSHIPTAVKIKGFSG   60 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSS--------------------TTHHHHHHHHHTSCSSCEEEEECS
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccc--------------------ccchhHHHHHHCCccccCCcEEEc
Confidence            4899999 599999999888754 65 579998721                    112222334444433344433221


Q ss_pred             CCCCCcchHhhcccccEEEEccC
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGLD  112 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~alD  112 (563)
                         ..  +.+-+++.|+||.+..
T Consensus        61 ---~~--~~~~~~~aDvvvitaG   78 (145)
T d2cmda1          61 ---ED--ATPALEGADVVLISAG   78 (145)
T ss_dssp             ---SC--CHHHHTTCSEEEECCS
T ss_pred             ---CC--CccccCCCCEEEECCC
Confidence               11  2345789999988754

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=89.81  E-value=0.18  Score=41.19  Aligned_cols=32  Identities=19%  Similarity=0.217  Sum_probs=26.8

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCC--CeEEEEeC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGF--QDIHIIDM   44 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gv--g~I~iiD~   44 (563)
                      ++++|||+|.+|+|++..|+..+-  .++++++.
T Consensus        19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~   52 (117)
T d1feca2          19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYR   52 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEES
T ss_pred             CeEEEECCChHHHHHHHHhHhhcccccccceecc
Confidence            689999999999999998886642  37898874

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=89.76  E-value=0.51  Score=43.18  Aligned_cols=105  Identities=19%  Similarity=0.255  Sum_probs=58.8

Q ss_pred             cCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           11 KGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        11 ~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      .++||||.|+ |-+|..+++.|...|. +++.++.+.-...             -..|+... ..  ...+.+++  ...
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~-~V~~l~R~~~~~~-------------~~~~~~~~-~~--~~~~~~~~--~~~   62 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGH-PTFLLVRESTASS-------------NSEKAQLL-ES--FKASGANI--VHG   62 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCCCCTTT-------------THHHHHHH-HH--HHTTTCEE--ECC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEECCCcccc-------------chhHHHHH-Hh--hccCCcEE--EEe
Confidence            3689999996 8999999999999996 5777664321110             01122211 11  12334443  445


Q ss_pred             CCCCCcchHhhcccccEEEEccCCHH--HHHHHHHHHHhcCC-CEEEe
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGLDNLD--ARRHVNRLCLAADV-PLVES  134 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~alDn~~--ar~~in~~c~~~~~-pli~~  134 (563)
                      ++.........+...+.|+.......  .-..+.+.+...++ .++..
T Consensus        63 d~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  110 (307)
T d1qyca_          63 SIDDHASLVEAVKNVDVVISTVGSLQIESQVNIIKAIKEVGTVKRFFP  110 (307)
T ss_dssp             CTTCHHHHHHHHHTCSEEEECCCGGGSGGGHHHHHHHHHHCCCSEEEC
T ss_pred             ecccchhhhhhhhhceeeeecccccccchhhHHHHHHHHhccccceee
Confidence            55544444566788898888654322  22233344444443 44443

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=89.71  E-value=0.24  Score=46.29  Aligned_cols=36  Identities=31%  Similarity=0.558  Sum_probs=31.0

Q ss_pred             HHHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         8 ~kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +||+++.++|.| ++|||.++++.|+..|. ++.+.|.
T Consensus         2 nrL~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~~   38 (253)
T d1hxha_           2 NRLQGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDI   38 (253)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            368899999988 67999999999999997 5888764

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=89.66  E-value=0.57  Score=42.49  Aligned_cols=33  Identities=39%  Similarity=0.661  Sum_probs=29.9

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ...+|+|||+|..|-+.|..|++.|. .++|+|.
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~G~-~v~l~E~   80 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMESGY-TVHLTDT   80 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCceEEEEcccHHHHHHHHHHHHhcc-ceeeEee
Confidence            46889999999999999999999997 6899874

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=89.63  E-value=0.14  Score=46.55  Aligned_cols=37  Identities=32%  Similarity=0.548  Sum_probs=32.6

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~   46 (563)
                      .|++++|.|-|.|.+|..+++.|...| .++++.|.|.
T Consensus        24 ~L~gk~v~IqG~G~VG~~~A~~L~~~G-akvvv~d~d~   60 (201)
T d1c1da1          24 SLDGLTVLVQGLGAVGGSLASLAAEAG-AQLLVADTDT   60 (201)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSCH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEecchH
Confidence            477899999999999999999999999 5788888653

>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

Probab=89.62  E-value=0.54  Score=42.32  Aligned_cols=107  Identities=14%  Similarity=0.260  Sum_probs=63.0

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCC--eEEEEeCCccCcccCccc--cCCCCCC---CC-chHHHHHHHHHHhhCCCceE
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQ--DIHIIDMDTIEVSNLNRQ--FLFRQSH---VG-QSKAKVARDAVLKFRPQMSI   84 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg--~I~iiD~D~Ve~sNLnRq--fLf~~~d---iG-k~Ka~va~~~l~~~np~v~I   84 (563)
                      .||.|||.||-||.++..|...|+.  ++..+|.|.-..++..-+  .+...+.   .| ....++.++...+-.     
T Consensus         1 ~kI~viGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L~~~~a~~ki~iG~~~t~G~G~g~~p~~g~~aa~e~~-----   75 (194)
T d1w5fa1           1 LKIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQVLEASNADVKIQIGENITRGLGAGGRPEIGEQAALESE-----   75 (194)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHHHCCTTEEEEEEESCHHHHHTCCCSEEEECCTTTTTTSCCTTCHHHHHHHHHHTH-----
T ss_pred             CeEEEEEeCchHHHHHHHHHHcCCCceEEEEEcCCHHHHhcCCcceEEecccccCCCcccccCchhhHhHHHHHH-----
Confidence            3799999999999999999999986  567778887666543211  1222211   11 112233333222110     


Q ss_pred             EEeccCCCCCcchHhhcccccEEEEc--cCC---HHHHHHHHHHHHhcCCCEEEe
Q 008516           85 TAHHANVKDPKFNVEFFKQFNVVLNG--LDN---LDARRHVNRLCLAADVPLVES  134 (563)
Q Consensus        85 ~~~~~~i~~~~~~~~~~~~~dvVi~a--lDn---~~ar~~in~~c~~~~~pli~~  134 (563)
                                ..-.+.+++.|+|+-+  +.-   --+-..+.++++..+++.+..
T Consensus        76 ----------~~I~~~l~~~d~vfi~AGlGGgTGtgaapviA~~ake~g~lvv~i  120 (194)
T d1w5fa1          76 ----------EKIREVLQDTHMVFITAGFGGGTGTGASPVIAKIAKEMGILTVAI  120 (194)
T ss_dssp             ----------HHHHHHTTTCSEEEEEEETTSSHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             ----------HHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHHHcCCceEEE
Confidence                      0013446677877653  221   235667889999988766544

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=89.50  E-value=0.18  Score=44.67  Aligned_cols=33  Identities=21%  Similarity=0.263  Sum_probs=29.2

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCC-eEEEEeCC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQ-DIHIIDMD   45 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg-~I~iiD~D   45 (563)
                      +||+|||+|.+|.|+|..|.+.|-+ +|++++.+
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~   34 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKG   34 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            5899999999999999999999875 69998754

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.45  E-value=0.14  Score=45.98  Aligned_cols=35  Identities=20%  Similarity=0.267  Sum_probs=30.1

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCC-----eEEEEeCCcc
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQ-----DIHIIDMDTI   47 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg-----~I~iiD~D~V   47 (563)
                      +||+|||+|-+|+..|..|+..|..     +.++++.+..
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~~~~~   40 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFT   40 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESCCT
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCceEEeeeeecccCCC
Confidence            4899999999999999999999975     6788876644

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.37  E-value=0.28  Score=45.45  Aligned_cols=36  Identities=22%  Similarity=0.416  Sum_probs=31.4

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ||++++++|.| ++|||.++++.|+..|. ++.++|.+
T Consensus         3 ~l~gK~alITGas~GIG~aia~~la~~G~-~Vi~~~r~   39 (245)
T d2ag5a1           3 RLDGKVIILTAAAQGIGQAAALAFAREGA-KVIATDIN   39 (245)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCC
Confidence            57888888887 78999999999999996 78898865

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=89.21  E-value=0.68  Score=39.67  Aligned_cols=86  Identities=20%  Similarity=0.194  Sum_probs=52.4

Q ss_pred             CcEEEECCcHHHHH-HHHHHHHh-CCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           13 AKVLMVGAGGIGCE-LLKTLALS-GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        13 ~~VlvvGaGgiG~e-llknLal~-Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      .||.|||+|.+|.. .+..|... |+.-+.+.|.+                   ..|+...++.   .+  +.       
T Consensus         2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~-------------------~~~~~~~~~~---~~--~~-------   50 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPT-------------------RAKALPICES---WR--IP-------   50 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSS-------------------CTTHHHHHHH---HT--CC-------
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEech-------------------hHhhhhhhhc---cc--cc-------
Confidence            58999999999987 56667654 44334455532                   1233333332   22  11       


Q ss_pred             CCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEE
Q 008516           91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLV  132 (563)
Q Consensus        91 i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli  132 (563)
                      ..+  ...++.++.|+|+.++.+ ..+..+...+..+|++++
T Consensus        51 ~~~--~~~~l~~~~D~V~I~tp~-~~h~~~~~~al~~gk~V~   89 (164)
T d1tlta1          51 YAD--SLSSLAASCDAVFVHSST-ASHFDVVSTLLNAGVHVC   89 (164)
T ss_dssp             BCS--SHHHHHTTCSEEEECSCT-THHHHHHHHHHHTTCEEE
T ss_pred             ccc--cchhhhhhcccccccccc-hhccccccccccccceee
Confidence            111  123456789999999875 456666777888888764

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=89.15  E-value=0.63  Score=40.14  Aligned_cols=34  Identities=21%  Similarity=0.424  Sum_probs=30.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ..+|+|+|+||+|.-.+..+...|..++..+|..
T Consensus        29 g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~   62 (175)
T d1cdoa2          29 GSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLN   62 (175)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred             CCEEEEEecCCccchHHHHHHHHhhchheeecch
Confidence            4569999999999999999999999999998743

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=89.10  E-value=0.23  Score=42.67  Aligned_cols=49  Identities=16%  Similarity=0.189  Sum_probs=34.7

Q ss_pred             cccEEEE-ccCCHHHHHHHHHHHHhcCCCEEEeccccc-----eeeEEEEeCCCC
Q 008516          103 QFNVVLN-GLDNLDARRHVNRLCLAADVPLVESGTTGF-----LGQVTVHVKGKT  151 (563)
Q Consensus       103 ~~dvVi~-alDn~~ar~~in~~c~~~~~pli~~gt~G~-----~G~v~v~~~~~t  151 (563)
                      +-.++++ ++-+++.-+.+.+.+.+.++.++++...|.     .|....+..+..
T Consensus        81 ~~~~iid~sT~~p~~~~~~~~~~~~~gi~~ldapVsGg~~~A~~G~L~~~vgG~~  135 (156)
T d2cvza2          81 EGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVMLGGPE  135 (156)
T ss_dssp             TTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEESCH
T ss_pred             ccccccccccCCHHHHHHHHHHHHHcCCeEEeccccCchhhhccCCEEEEEeCCH
Confidence            3345555 566777777888899999999999987764     366666655543

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.84  E-value=0.17  Score=45.62  Aligned_cols=86  Identities=10%  Similarity=0.101  Sum_probs=53.4

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK   92 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~   92 (563)
                      +||.|+|+|-+|..++-.|+..|. +++.+|.|.=-..+|++.-..-. +-+.  .+.+.+....-    +.....    
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~-~V~g~D~n~~~i~~ln~g~~p~~-e~~~--~~~l~~~~~~~----~~~~~~----   68 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGH-EVIGVDVSSTKIDLINQGKSPIV-EPGL--EALLQQGRQTG----RLSGTT----   68 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTCCSSC-CTTH--HHHHHHHHHTT----CEEEES----
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCC-cEEEEeCCHHHHHHhcccCCccc-chhh--hhhhhhhhccc----ccccCC----
Confidence            579999999999999999999997 68999988666666654432111 1111  12222222221    121111    


Q ss_pred             CCcchHhhcccccEEEEccCC
Q 008516           93 DPKFNVEFFKQFNVVLNGLDN  113 (563)
Q Consensus        93 ~~~~~~~~~~~~dvVi~alDn  113 (563)
                         ...+.++..|+++.|++.
T Consensus        69 ---~~~~~i~~~d~i~i~VpT   86 (202)
T d1mv8a2          69 ---DFKKAVLDSDVSFICVGT   86 (202)
T ss_dssp             ---CHHHHHHTCSEEEECCCC
T ss_pred             ---CHHHHHhhCCEEEEecCc
Confidence               123456789999998764

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=88.80  E-value=0.7  Score=41.13  Aligned_cols=34  Identities=21%  Similarity=0.341  Sum_probs=28.0

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ++++++|+|+||.|-+++..+-..|...+-++|.
T Consensus         1 k~kkl~i~Gagg~~~~v~di~~~~~~~~~~f~dd   34 (193)
T d3bswa1           1 RTEKIYIYGASGHGLVCEDVAKNMGYKECIFLDD   34 (193)
T ss_dssp             CCSEEEEEC--CHHHHHHHHHHHHTCCEEEECCC
T ss_pred             CCCEEEEEcCCHhHHHHHHHHHhCCCcEEEEEcC
Confidence            4689999999999999999999999887777764

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=88.70  E-value=0.83  Score=43.53  Aligned_cols=30  Identities=37%  Similarity=0.596  Sum_probs=26.2

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEe
Q 008516           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        13 ~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      +||||.| .|-||+.+++.|...|. +++++|
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~-~V~~~d   31 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGH-DVIILD   31 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC-EEEEEE
Confidence            4799998 67899999999999995 688887

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.69  E-value=0.77  Score=40.07  Aligned_cols=90  Identities=11%  Similarity=0.137  Sum_probs=54.1

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEE-EEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIH-IIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~-iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i   91 (563)
                      .||.|||+|.+|...++.|...+--+++ +.|                   ....|+..+++.. .+.+..++.  . ++
T Consensus         2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d-------------------~~~~~~~~~~~~~-~~~~~~~~~--~-~~   58 (184)
T d1ydwa1           2 IRIGVMGCADIARKVSRAIHLAPNATISGVAS-------------------RSLEKAKAFATAN-NYPESTKIH--G-SY   58 (184)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEEC-------------------SSHHHHHHHHHHT-TCCTTCEEE--S-SH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEe-------------------CCccccccchhcc-ccccceeec--C-cH
Confidence            4899999999999999999876422333 333                   2233444333211 111223321  1 11


Q ss_pred             CCCcchHhhc--ccccEEEEccCCHHHHHHHHHHHHhcCCCEE
Q 008516           92 KDPKFNVEFF--KQFNVVLNGLDNLDARRHVNRLCLAADVPLV  132 (563)
Q Consensus        92 ~~~~~~~~~~--~~~dvVi~alDn~~ar~~in~~c~~~~~pli  132 (563)
                            .+++  .+.|+|+.++.+ ..+..+...|..+|++++
T Consensus        59 ------~~ll~~~~iD~v~I~tp~-~~h~~~~~~~l~~g~~v~   94 (184)
T d1ydwa1          59 ------ESLLEDPEIDALYVPLPT-SLHVEWAIKAAEKGKHIL   94 (184)
T ss_dssp             ------HHHHHCTTCCEEEECCCG-GGHHHHHHHHHTTTCEEE
T ss_pred             ------HHhhhccccceeeecccc-hhhcchhhhhhhccceee
Confidence                  2333  468999999876 456667778888888764

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.66  E-value=0.91  Score=43.05  Aligned_cols=32  Identities=31%  Similarity=0.434  Sum_probs=26.3

Q ss_pred             CcE-EEECCcH-HHHHHHHHHHHhCCCeEEEEeCC
Q 008516           13 AKV-LMVGAGG-IGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        13 ~~V-lvvGaGg-iG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +|| ||.|+.| ||+.+++.|...|. +++.+|..
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~-~V~~i~r~   34 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGY-EVHGIVRR   34 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcC-EEEEEECC
Confidence            578 8888655 99999999999997 67777763

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=88.57  E-value=0.51  Score=44.01  Aligned_cols=34  Identities=26%  Similarity=0.574  Sum_probs=29.6

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      |+++.++|.| .+|||.++++.|+..|. ++.+.|.
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r   37 (254)
T d1hdca_           3 LSGKTVIITGGARGLGAEAARQAVAAGA-RVVLADV   37 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            6788899998 56999999999999998 5888874

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=88.50  E-value=0.18  Score=48.70  Aligned_cols=32  Identities=47%  Similarity=0.700  Sum_probs=29.1

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEe
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      +++||+|||+|-.|+.+|..|+..|. +++|++
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~k~G~-~V~viE   32 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLAEKGH-QVHIID   32 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCC-CEEEEE
Confidence            47899999999999999999999986 788876

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=88.47  E-value=0.28  Score=42.38  Aligned_cols=34  Identities=26%  Similarity=0.370  Sum_probs=29.7

Q ss_pred             CCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           12 GAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        12 ~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ..+|+|+|+ |++|.-.+..+...|..++.++|.+
T Consensus        28 g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~   62 (170)
T d1jvba2          28 TKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVR   62 (170)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred             CCEEEEEeccccceeeeeecccccccccccccccc
Confidence            457999995 9999999999999999999998744

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=88.44  E-value=0.39  Score=44.39  Aligned_cols=34  Identities=29%  Similarity=0.430  Sum_probs=28.1

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      |+++.++|-| .+|||.++++.|+..|. ++.+.|.
T Consensus         2 l~gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r   36 (243)
T d1q7ba_           2 FEGKIALVTGASRGIGRAIAETLAARGA-KVIGTAT   36 (243)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeC
Confidence            4567777777 78999999999999998 6777774

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=88.38  E-value=0.96  Score=38.79  Aligned_cols=87  Identities=15%  Similarity=0.205  Sum_probs=51.8

Q ss_pred             CcEEEECCcHHHHH-HHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516           13 AKVLMVGAGGIGCE-LLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (563)
Q Consensus        13 ~~VlvvGaGgiG~e-llknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i   91 (563)
                      .||.|||+|++|.. .+..|...+--.+.++|.+.                   .+++.+++.   ++ ...   ...++
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~-------------------~~~~~~~~~---~~-~~~---~~~~~   55 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNP-------------------KVLGTLATR---YR-VSA---TCTDY   55 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCH-------------------HHHHHHHHH---TT-CCC---CCSST
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCH-------------------HHHHHHHHh---cc-ccc---ccccH
Confidence            58999999999976 57777666544555555221                   233333332   21 111   11111


Q ss_pred             CCCcchHhhc-ccccEEEEccCCHHHHHHHHHHHHhcCCCEE
Q 008516           92 KDPKFNVEFF-KQFNVVLNGLDNLDARRHVNRLCLAADVPLV  132 (563)
Q Consensus        92 ~~~~~~~~~~-~~~dvVi~alDn~~ar~~in~~c~~~~~pli  132 (563)
                            .+++ .+.|+|+.++.+ .....+-..|..+|++++
T Consensus        56 ------~~ll~~~iD~V~I~tp~-~~H~~~~~~al~~gk~V~   90 (167)
T d1xeaa1          56 ------RDVLQYGVDAVMIHAAT-DVHSTLAAFFLHLGIPTF   90 (167)
T ss_dssp             ------TGGGGGCCSEEEECSCG-GGHHHHHHHHHHTTCCEE
T ss_pred             ------HHhcccccceecccccc-cccccccccccccccccc
Confidence                  1222 368999999875 556666777888998865

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.31  E-value=1.1  Score=42.63  Aligned_cols=33  Identities=36%  Similarity=0.467  Sum_probs=27.8

Q ss_pred             cCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        11 ~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +++||||.| .|=||+++++.|...|- .++.+|.
T Consensus         1 M~kKILITG~tGfIGs~lv~~Ll~~g~-~V~~ld~   34 (346)
T d1ek6a_           1 MAEKVLVTGGAGYIGSHTVLELLEAGY-LPVVIDN   34 (346)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC-CEEEEEC
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCcC-EEEEEEC
Confidence            357999998 78899999999999995 6777773

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.31  E-value=0.45  Score=44.09  Aligned_cols=64  Identities=17%  Similarity=0.256  Sum_probs=47.1

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHh---CCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEE
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALS---GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSIT   85 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~---Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~   85 (563)
                      |.++.++|-| .+|||-++++.|++.   |. ++.++|.                   ...+.+.+++.+...+|+.++.
T Consensus         4 L~gKvalITGas~GIG~aiA~~lA~~~~~G~-~Vv~~~r-------------------~~~~l~~~~~~l~~~~~~~~~~   63 (259)
T d1oaaa_           4 LGCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSAR-------------------SESMLRQLKEELGAQQPDLKVV   63 (259)
T ss_dssp             CBSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEES-------------------CHHHHHHHHHHHHHHCTTSEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHhcccCCC-EEEEEEC-------------------CHHHHHHHHHHHHhhcCCceEE
Confidence            3444444447 579999999999974   43 6777753                   2456778888888889999998


Q ss_pred             EeccCCCC
Q 008516           86 AHHANVKD   93 (563)
Q Consensus        86 ~~~~~i~~   93 (563)
                      .+..++++
T Consensus        64 ~~~~Dvs~   71 (259)
T d1oaaa_          64 LAAADLGT   71 (259)
T ss_dssp             EEECCTTS
T ss_pred             EEEccCCC
Confidence            88888754

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=88.27  E-value=0.54  Score=43.90  Aligned_cols=36  Identities=25%  Similarity=0.449  Sum_probs=30.3

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      .|++++++|.| .+|||-++++.|+..|. ++.+.|.+
T Consensus        15 sL~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~   51 (272)
T d1g0oa_          15 SLEGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYAN   51 (272)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCC
Confidence            37888889988 78999999999999997 57777633

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=88.26  E-value=0.5  Score=43.57  Aligned_cols=63  Identities=21%  Similarity=0.304  Sum_probs=41.8

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        12 ~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      +..|+|.| .||||-++++.|+..|..+|.++-          |.      .....+++.+.+.+...  +.++..+..+
T Consensus         9 ~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~----------R~------~~~~~~~~~~~~~l~~~--g~~v~~~~~D   70 (259)
T d2fr1a1           9 TGTVLVTGGTGGVGGQIARWLARRGAPHLLLVS----------RS------GPDADGAGELVAELEAL--GARTTVAACD   70 (259)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEE----------SS------GGGSTTHHHHHHHHHHT--TCEEEEEECC
T ss_pred             cCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEe----------CC------ccCHHHHHHHHHHHHhc--cccccccccc
Confidence            34688888 799999999999999998888763          11      11122344444555544  4567777666


Q ss_pred             CC
Q 008516           91 VK   92 (563)
Q Consensus        91 i~   92 (563)
                      ++
T Consensus        71 v~   72 (259)
T d2fr1a1          71 VT   72 (259)
T ss_dssp             TT
T ss_pred             cc
Confidence            64

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=88.22  E-value=0.48  Score=40.72  Aligned_cols=91  Identities=20%  Similarity=0.308  Sum_probs=56.2

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCC--CeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           13 AKVLMVGA-GGIGCELLKTLALSGF--QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        13 ~~VlvvGa-GgiG~ellknLal~Gv--g~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      -||.|||+ |-+|.|+++.|....+  .++..+.               ..+..|+.        +....+......   
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~---------------s~~s~G~~--------~~~~~~~~~~~~---   55 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLA---------------SARSAGKS--------LKFKDQDITIEE---   55 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEE---------------CGGGTTCE--------EEETTEEEEEEE---
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEec---------------cccccccc--------ccccCCcccccc---
Confidence            37999997 8899999999998865  4444432               22334431        111111111111   


Q ss_pred             CCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEecc
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGT  136 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt  136 (563)
                            ..+..+.+.|+++.++.+..+..+..+ ....+..+||-+.
T Consensus        56 ------~~~~~~~~~d~~f~~~~~~~s~~~~~~-~~~~~~~VIDlSs   95 (154)
T d2gz1a1          56 ------TTETAFEGVDIALFSAGSSTSAKYAPY-AVKAGVVVVDNTS   95 (154)
T ss_dssp             ------CCTTTTTTCSEEEECSCHHHHHHHHHH-HHHTTCEEEECSS
T ss_pred             ------cchhhhhhhhhhhhccCccchhhHHhh-hccccceehhcCh
Confidence                  112345788999999988777766554 4567888888654

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=88.14  E-value=0.21  Score=46.31  Aligned_cols=31  Identities=29%  Similarity=0.480  Sum_probs=28.4

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +||+|||+|..|...|..|+..|. +++|+|.
T Consensus        31 kkV~IIGaG~aGLsaA~~L~~~G~-~V~vlE~   61 (370)
T d2iida1          31 KHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEA   61 (370)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHHTC-EEEEECS
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCC-CEEEEeC
Confidence            489999999999999999999997 7999874

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=88.11  E-value=2.2  Score=40.45  Aligned_cols=79  Identities=20%  Similarity=0.146  Sum_probs=47.2

Q ss_pred             CCcEEEECCcH-HHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           12 GAKVLMVGAGG-IGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        12 ~~~VlvvGaGg-iG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      +++|||.|+.| ||+.+++.|...|.. +..+..      |             ..|..-.........+.-.......+
T Consensus        11 gk~VlVTG~sGfIGs~l~~~Ll~~G~~-V~~~vR------~-------------~~~~~~~~~~~~~~~~~~~~~~~~~D   70 (342)
T d1y1pa1          11 GSLVLVTGANGFVASHVVEQLLEHGYK-VRGTAR------S-------------ASKLANLQKRWDAKYPGRFETAVVED   70 (342)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES------S-------------HHHHHHHHHHHHHHSTTTEEEEECSC
T ss_pred             cCEEEEECCCCHHHHHHHHHHHHCcCE-EEEEeC------C-------------chhHHHHHHhhhccccccccEEEecc
Confidence            58999999666 999999999999964 332211      1             12333333333333444444445556


Q ss_pred             CCCCcchHhhcccccEEEEc
Q 008516           91 VKDPKFNVEFFKQFNVVLNG  110 (563)
Q Consensus        91 i~~~~~~~~~~~~~dvVi~a  110 (563)
                      +.+...-.+.+.++|.|+..
T Consensus        71 l~~~~~~~~~~~~~~~v~~~   90 (342)
T d1y1pa1          71 MLKQGAYDEVIKGAAGVAHI   90 (342)
T ss_dssp             TTSTTTTTTTTTTCSEEEEC
T ss_pred             ccchhhhhhhcccchhhhhh
Confidence            64433334567788988875

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=88.05  E-value=0.27  Score=44.08  Aligned_cols=33  Identities=27%  Similarity=0.426  Sum_probs=29.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      ..+|+|+|+|++|.-.+..+...|.+++.++|.
T Consensus        26 G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~   58 (195)
T d1kola2          26 GSTVYVAGAGPVGLAAAASARLLGAAVVIVGDL   58 (195)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEES
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhcccceeeecc
Confidence            467999999999999998888999999999984

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.91  E-value=0.45  Score=43.93  Aligned_cols=35  Identities=29%  Similarity=0.511  Sum_probs=29.6

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      |++++++|.| .+|||.++++.|+..|. ++.++|.+
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~   38 (242)
T d1cyda_           3 FSGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRT   38 (242)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            5678889988 57999999999999997 68888743

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.78  E-value=0.26  Score=41.41  Aligned_cols=56  Identities=14%  Similarity=0.179  Sum_probs=37.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHHH----hCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhh
Q 008516           12 GAKVLMVGAGGIGCELLKTLAL----SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKF   78 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal----~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~   78 (563)
                      .++++|||+|.+|+|++-.|++    .|. ++++++...--   |.|+       .++.=++.+.+.+++.
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~-~Vt~i~~~~~~---l~~~-------~~~~~~~~~~~~l~~~   96 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGT-EVIQLFPEKGN---MGKI-------LPEYLSNWTMEKVRRE   96 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTC-EEEEECSSSST---TTTT-------SCHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCC-EEEEecccccC---Cccc-------CCHHHHHHHHHHHHhC
Confidence            4679999999999999999975    454 78888753221   2222       2333345566666654

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=87.70  E-value=0.2  Score=45.39  Aligned_cols=30  Identities=27%  Similarity=0.406  Sum_probs=27.6

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEe
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      .+|+|||+|..|...|..|++.|. +++|++
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~-~V~vlE   30 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGT-DAVLLE   30 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTC-CEEEEC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCC-CEEEEe
Confidence            479999999999999999999998 688876

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=87.56  E-value=1  Score=42.67  Aligned_cols=36  Identities=22%  Similarity=0.234  Sum_probs=30.6

Q ss_pred             HcCCcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDT   46 (563)
Q Consensus        10 L~~~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~   46 (563)
                      .+++||||.|+ |-||+++++.|...|. ++..+|...
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~-~V~~~~r~~   42 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLTA   42 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCC
Confidence            68999999995 5599999999999997 588887543

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=87.52  E-value=0.22  Score=44.82  Aligned_cols=34  Identities=24%  Similarity=0.462  Sum_probs=29.4

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      |.+++|.|||+|.||.++++-|...|+ ++...|.
T Consensus        47 L~gktvgIiG~G~IG~~va~~l~~fg~-~v~~~d~   80 (193)
T d1mx3a1          47 IRGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDP   80 (193)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECT
T ss_pred             eeCceEEEeccccccccceeeeecccc-ceeeccC
Confidence            778999999999999999999988776 4666664

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=87.52  E-value=0.25  Score=44.63  Aligned_cols=35  Identities=23%  Similarity=0.248  Sum_probs=30.3

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .|.+++|.|+|.|.||.++++.|...|+ ++...|.
T Consensus        42 ~l~~ktvgIiG~G~IG~~va~~l~~fg~-~v~~~d~   76 (199)
T d1dxya1          42 ELGQQTVGVMGTGHIGQVAIKLFKGFGA-KVIAYDP   76 (199)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             cccceeeeeeecccccccccccccccce-eeeccCC
Confidence            4778999999999999999999998887 4667764

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.49  E-value=0.93  Score=43.27  Aligned_cols=108  Identities=23%  Similarity=0.267  Sum_probs=60.7

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (563)
Q Consensus        13 ~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i   91 (563)
                      +.|||.| .|=||+.+++.|...|. +++.+|       |+.|...         ....-.+.+  .++  +++.+..++
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~-~V~~~d-------~~~~~~~---------~~~~~~~~~--~~~--~v~~~~~Dl   60 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGY-DCVVAD-------NLSNSTY---------DSVARLEVL--TKH--HIPFYEVDL   60 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE-------CCSSCCT---------HHHHHHHHH--HTS--CCCEEECCT
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC-eEEEEE-------CCCCcch---------hHHHhHHhh--ccc--CCeEEEeec
Confidence            3467777 67899999999999996 577776       3333221         111111111  122  344455566


Q ss_pred             CCCcchHhhcc--cccEEEEccC-----------------CHHHHHHHHHHHHhcCC-CEEEecccccee
Q 008516           92 KDPKFNVEFFK--QFNVVLNGLD-----------------NLDARRHVNRLCLAADV-PLVESGTTGFLG  141 (563)
Q Consensus        92 ~~~~~~~~~~~--~~dvVi~alD-----------------n~~ar~~in~~c~~~~~-pli~~gt~G~~G  141 (563)
                      .+...-...+.  +.|+|+.+..                 |......+-+.|++.++ .+|..++...+|
T Consensus        61 ~d~~~l~~~~~~~~~d~VihlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~SS~~vyg  130 (347)
T d1z45a2          61 CDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYG  130 (347)
T ss_dssp             TCHHHHHHHHHHSCCCEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGC
T ss_pred             CCHHHHHHHHhccCCCEEEEccccccccccccCcccccccchhhhHHHHHHHHhcccceEEeecceeeec
Confidence            44322223333  6788887422                 12223445566777885 478887776665

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=87.45  E-value=0.37  Score=44.43  Aligned_cols=107  Identities=21%  Similarity=0.287  Sum_probs=55.1

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516           13 AKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (563)
Q Consensus        13 ~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i   91 (563)
                      +||||.|+ |-||+.+++.|...|  ++..+|...-       ++   ..|+-.  .+.+.+.++...|++-|+.  .-+
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g--~~v~~~~~~~-------~~---~~Dl~~--~~~~~~~i~~~~~D~Vih~--Aa~   64 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVG--NLIALDVHSK-------EF---CGDFSN--PKGVAETVRKLRPDVIVNA--AAH   64 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTS--EEEEECTTCS-------SS---CCCTTC--HHHHHHHHHHHCCSEEEEC--CCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCC--CEEEEECCCc-------cc---cCcCCC--HHHHHHHHHHcCCCEEEEe--ccc
Confidence            57999995 889999999998766  6666653321       11   123322  2334555666666544432  111


Q ss_pred             CCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccce
Q 008516           92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFL  140 (563)
Q Consensus        92 ~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~~  140 (563)
                      ...   .......+..  -..|...-..+-+.|...++.++...+.+.+
T Consensus        65 ~~~---~~~~~~~~~~--~~~n~~~~~~l~~~~~~~~~~~~~~ss~~~~  108 (298)
T d1n2sa_          65 TAV---DKAESEPELA--QLLNATSVEAIAKAANETGAWVVHYSTDYVF  108 (298)
T ss_dssp             CCH---HHHTTCHHHH--HHHHTHHHHHHHHHHTTTTCEEEEEEEGGGS
T ss_pred             ccc---cccccCcccc--ccccccccccchhhhhccccccccccccccc
Confidence            000   0000000000  0012333455666777788888877665543

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=87.36  E-value=0.46  Score=44.67  Aligned_cols=104  Identities=17%  Similarity=0.261  Sum_probs=56.9

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        12 ~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      ++||||.| .|-||+.+++.|..-|-..+ ++|.         |    ++-|+...  +...+.++...|+.-+..... 
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi-~~~~---------~----~~~~~~~~--~~~~~~~~~~~~d~v~~~a~~-   64 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVEL-VLRT---------R----DELNLLDS--RAVHDFFASERIDQVYLAAAK-   64 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEE-ECCC---------T----TTCCTTCH--HHHHHHHHHHCCSEEEECCCC-
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEE-EecC---------c----hhccccCH--HHHHHHHhhcCCCEEEEcchh-
Confidence            56899998 78899999999999886433 3221         0    12233332  344555666666544332111 


Q ss_pred             CCCC----cchHhhcccccEEEEccCCHHHHHHHHHHHHhcCC-CEEEecccccee
Q 008516           91 VKDP----KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADV-PLVESGTTGFLG  141 (563)
Q Consensus        91 i~~~----~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~-pli~~gt~G~~G  141 (563)
                      +...    ....+++.         .|+..-..+-+.|.++++ .+|..+|...+|
T Consensus        65 ~~~~~~~~~~~~~~~~---------~Nv~gt~~ll~~a~~~~v~~~i~~SS~~vyg  111 (315)
T d1e6ua_          65 VGGIVANNTYPADFIY---------QNMMIESNIIHAAHQNDVNKLLFLGSSCIYP  111 (315)
T ss_dssp             CCCHHHHHHCHHHHHH---------HHHHHHHHHHHHHHHTTCCEEEEECCGGGSC
T ss_pred             ccccccchhhHHHHHH---------HHHHHHHHHHHHHHHcCCCEEEEECCceEcC
Confidence            1000    00111111         133333445566777886 599998877765

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=86.68  E-value=0.6  Score=40.54  Aligned_cols=85  Identities=13%  Similarity=0.108  Sum_probs=50.2

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHh-CCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALS-GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~-Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      ++.||.|+|+|.+|..+++.|... ++.-+.+.|.+.        .      ...                ...+.... 
T Consensus         2 ~kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~--------~------~~~----------------~~~~~~~~-   50 (170)
T d1f06a1           2 TNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRA--------T------LDT----------------KTPVFDVA-   50 (170)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSS--------C------CSS----------------SSCEEEGG-
T ss_pred             CcceEEEECChHHHHHHHHHHHhCCCcEEEEEEeccc--------c------ccc----------------ccccccch-
Confidence            456899999999999999998764 333333444321        0      000                01111111 


Q ss_pred             CCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEE
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVE  133 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~  133 (563)
                      +      ......+.|+|+.++-+. +...+...|.++|+.+|.
T Consensus        51 ~------~~~~~~~~D~Vvi~tp~~-~h~~~a~~aL~aG~~vv~   87 (170)
T d1f06a1          51 D------VDKHADDVDVLFLCMGSA-TDIPEQAPKFAQFACTVD   87 (170)
T ss_dssp             G------GGGTTTTCSEEEECSCTT-THHHHHHHHHTTTSEEEC
T ss_pred             h------hhhhccccceEEEeCCCc-ccHHHHHHHHHCCCcEEE
Confidence            1      123446789999988653 355566777888886553

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.58  E-value=1.2  Score=42.81  Aligned_cols=76  Identities=25%  Similarity=0.297  Sum_probs=54.6

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      .++++||-||||. | .++..+++.|..+++.+|..                    +.++.+++.+++.+-.-+|+.+..
T Consensus        37 ~~~~~VLDlGcGt-G-~ls~~aa~~Ga~~V~avd~s--------------------~~~~~a~~~~~~~~~~~~i~~i~~   94 (328)
T d1g6q1_          37 FKDKIVLDVGCGT-G-ILSMFAAKHGAKHVIGVDMS--------------------SIIEMAKELVELNGFSDKITLLRG   94 (328)
T ss_dssp             HTTCEEEEETCTT-S-HHHHHHHHTCCSEEEEEESS--------------------THHHHHHHHHHHTTCTTTEEEEES
T ss_pred             CCcCEEEEeCCCC-C-HHHHHHHHhCCCEEEEEeCC--------------------HHHHHHHHHHHHhCccccceEEEe
Confidence            5789999999984 3 34556788999999998841                    245667777777777777888887


Q ss_pred             CCCCCcchHhhcccccEEEEc
Q 008516           90 NVKDPKFNVEFFKQFNVVLNG  110 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~a  110 (563)
                      ++.+..+.   -.++|+|+..
T Consensus        95 ~~~~l~~~---~~~~D~i~se  112 (328)
T d1g6q1_          95 KLEDVHLP---FPKVDIIISE  112 (328)
T ss_dssp             CTTTSCCS---SSCEEEEEEC
T ss_pred             ehhhccCc---ccceeEEEEE
Confidence            77543221   2578999874

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=86.42  E-value=0.57  Score=44.01  Aligned_cols=30  Identities=33%  Similarity=0.566  Sum_probs=25.6

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEe
Q 008516           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        13 ~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      +||||.| +|-||+.+++.|...|. +++.+|
T Consensus         1 ~KILVTGatGfIGs~lv~~Ll~~g~-~V~~id   31 (338)
T d1orra_           1 AKLLITGGCGFLGSNLASFALSQGI-DLIVFD   31 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC-EEEEEE
Confidence            5899998 56699999999999996 677777

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=86.22  E-value=0.5  Score=43.85  Aligned_cols=62  Identities=19%  Similarity=0.223  Sum_probs=40.8

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      |..+.++|.| .||||.++++.|+..|.. +.+.+..                  .+.+.+.+++.+++...  ++..+.
T Consensus         4 L~GK~alITGas~GIG~aia~~la~~G~~-Vvi~~~~------------------~~~~~~~~~~~~~~~g~--~~~~~~   62 (259)
T d1ja9a_           4 LAGKVALTTGAGRGIGRGIAIELGRRGAS-VVVNYGS------------------SSKAAEEVVAELKKLGA--QGVAIQ   62 (259)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESS------------------CHHHHHHHHHHHHHTTC--CEEEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEcCC------------------ChHHHHHHHHHHHHcCC--CceEec
Confidence            6677888887 688999999999999985 5554421                  11244555666665543  445555


Q ss_pred             cCCC
Q 008516           89 ANVK   92 (563)
Q Consensus        89 ~~i~   92 (563)
                      .+++
T Consensus        63 ~D~~   66 (259)
T d1ja9a_          63 ADIS   66 (259)
T ss_dssp             CCTT
T ss_pred             CCCC
Confidence            5553

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=86.13  E-value=1.2  Score=40.87  Aligned_cols=58  Identities=17%  Similarity=0.270  Sum_probs=38.3

Q ss_pred             cEEEE-C-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516           14 KVLMV-G-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (563)
Q Consensus        14 ~Vlvv-G-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i   91 (563)
                      .|.|| | .+|||-++++.|+..|. ++.+.|...                  ..+.+.+++.+++..  .++..+..++
T Consensus         2 pV~lITGas~GIG~a~a~~la~~Ga-~V~i~~~~~------------------~~~~~~~~~~~~~~g--~~~~~~~~Dv   60 (244)
T d1edoa_           2 PVVVVTGASRGIGKAIALSLGKAGC-KVLVNYARS------------------AKAAEEVSKQIEAYG--GQAITFGGDV   60 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSC------------------HHHHHHHHHHHHHHT--CEEEEEECCT
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCC------------------HHHHHHHHHHHHHcC--CcEEEEeCCC
Confidence            45555 4 78999999999999997 566665321                  134566666666654  3555666665


Q ss_pred             C
Q 008516           92 K   92 (563)
Q Consensus        92 ~   92 (563)
                      +
T Consensus        61 ~   61 (244)
T d1edoa_          61 S   61 (244)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.87  E-value=0.68  Score=41.24  Aligned_cols=33  Identities=15%  Similarity=0.186  Sum_probs=28.8

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCC------eEEEEeCC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQ------DIHIIDMD   45 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg------~I~iiD~D   45 (563)
                      .||+|||+|.-|-..|..|++.|..      +++|+|..
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~   41 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEML   41 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecC
Confidence            5899999999999999999999842      68998853

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.85  E-value=0.97  Score=42.95  Aligned_cols=75  Identities=21%  Similarity=0.263  Sum_probs=50.9

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      +++++||-|||| .|. ++..+++.|..+++-+|..                    +.+..+++.+.+.+-.-+|.....
T Consensus        34 ~~~~~VLDiGcG-~G~-lsl~aa~~Ga~~V~aid~s--------------------~~~~~a~~~~~~~~~~~~i~~~~~   91 (311)
T d2fyta1          34 FKDKVVLDVGCG-TGI-LSMFAAKAGAKKVLGVDQS--------------------EILYQAMDIIRLNKLEDTITLIKG   91 (311)
T ss_dssp             TTTCEEEEETCT-TSH-HHHHHHHTTCSEEEEEESS--------------------THHHHHHHHHHHTTCTTTEEEEES
T ss_pred             CCcCEEEEECCC-CCH-HHHHHHHcCCCEEEEEeCH--------------------HHHHHHHHHHHHhCCCccceEEEe
Confidence            467889999998 332 5667888999999988742                    134445566666655567777777


Q ss_pred             CCCCCcchHhhcccccEEEE
Q 008516           90 NVKDPKFNVEFFKQFNVVLN  109 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~  109 (563)
                      ++.+....   ..++|+|+.
T Consensus        92 ~~~~l~~~---~~~~D~Ivs  108 (311)
T d2fyta1          92 KIEEVHLP---VEKVDVIIS  108 (311)
T ss_dssp             CTTTSCCS---CSCEEEEEE
T ss_pred             eHHHhcCc---cccceEEEE
Confidence            76543221   358999997

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=85.67  E-value=1.6  Score=39.96  Aligned_cols=60  Identities=13%  Similarity=0.130  Sum_probs=38.0

Q ss_pred             CcE-EEEC-CcHHHHHHHHHHHHhCCC------eEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceE
Q 008516           13 AKV-LMVG-AGGIGCELLKTLALSGFQ------DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSI   84 (563)
Q Consensus        13 ~~V-lvvG-aGgiG~ellknLal~Gvg------~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I   84 (563)
                      ++| +|-| .+|||-++++.|+..|..      .+.+.|.                   .+.+.+.+++.+++..  .++
T Consensus         1 K~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r-------------------~~~~l~~~~~~~~~~g--~~~   59 (240)
T d2bd0a1           1 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSR-------------------TAADLEKISLECRAEG--ALT   59 (240)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEES-------------------CHHHHHHHHHHHHTTT--CEE
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeC-------------------CHHHHHHHHHHHHhcC--CcE
Confidence            354 4556 689999999999999986      2444431                   2334555566665543  456


Q ss_pred             EEeccCCCC
Q 008516           85 TAHHANVKD   93 (563)
Q Consensus        85 ~~~~~~i~~   93 (563)
                      ..+..++++
T Consensus        60 ~~~~~Dvt~   68 (240)
T d2bd0a1          60 DTITADISD   68 (240)
T ss_dssp             EEEECCTTS
T ss_pred             EEEEecCCC
Confidence            666666643

>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NPL4-like protein 1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.65  E-value=0.32  Score=38.36  Aligned_cols=77  Identities=9%  Similarity=0.049  Sum_probs=49.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHhcCCCcCe--EEecCeEEEeeCCCchHHHHHHh--hhhhhcchhhhcCcccCCC
Q 008516          434 SETPLSLEINTSRSKLRDFVEKIVKAKLGINFPL--IMHGSNLLYEVGDDLDEVEVANY--AANLEKVKIQASSVTLCSS  509 (563)
Q Consensus       434 ~~~~~~l~i~~~~~TL~~li~~~lk~~~~l~~~~--i~~g~~~LY~~~~~~~~~~~~~~--~~nl~k~L~el~~gv~~g~  509 (563)
                      ...+-+++++..+.||.||-.. +.+++++.++.  ++.+..+|-..+ |   .....+  -.+-.++|+++  |+.||+
T Consensus         8 rdG~eRv~v~~~~~Tl~~LK~~-Ie~~L~VPv~~Q~LSl~~~llL~k~-P---~~~~~~~~l~d~~~~L~sl--~i~hGs   80 (94)
T d1wf9a1           8 RDGLERVSVDGPHITVSQLKTL-IQDQLQIPIHNQTLSTNRNLLLAKS-P---SDFLAFTDMADPNLRISSL--NLAHGS   80 (94)
T ss_dssp             SSCEEEEEECCTTSBHHHHHHH-HHHHSCCCTTTCCCBSSGGGGTCCS-H---HHHTTCCSSCCTTCBGGGT--CCCTTC
T ss_pred             cCCceEEEecCCCCcHHHHHHH-HHHHhCCCcccceeecChhhhccCC-c---cccchhhhccCCccCHHHc--CccCce
Confidence            3445578887557999999998 69999987754  555544433211 1   000011  13446789999  999999


Q ss_pred             cceeeccC
Q 008516          510 PPDFCCSC  517 (563)
Q Consensus       510 ~~~~~~~~  517 (563)
                      ++-+.-+|
T Consensus        81 ivyL~y~~   88 (94)
T d1wf9a1          81 MVYLAYEG   88 (94)
T ss_dssp             EEECCCSS
T ss_pred             EEEEEeee
Confidence            98665544

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.42  E-value=0.37  Score=42.23  Aligned_cols=94  Identities=16%  Similarity=0.154  Sum_probs=54.0

Q ss_pred             CCcEEEECCcHHH--HHHHHHHHHh---CCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHH----HHHHhhCCCc
Q 008516           12 GAKVLMVGAGGIG--CELLKTLALS---GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVAR----DAVLKFRPQM   82 (563)
Q Consensus        12 ~~~VlvvGaGgiG--~ellknLal~---Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~----~~l~~~np~v   82 (563)
                      +.||.|+|+|++|  +.++-.+...   .+++|.++|-|.                 ++.|.+++.    ......+..+
T Consensus         1 k~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e-----------------~~~~~~~~d~~~~~~~~~~~~~~   63 (169)
T d1s6ya1           1 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPE-----------------GKEKLEIVGALAKRMVEKAGVPI   63 (169)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGG-----------------GHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CcEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCc-----------------cHHHHHHHHHHHHHHHHhcCCCc
Confidence            3589999999665  4444444433   346888887321                 223344333    2344566677


Q ss_pred             eEEEeccCCCCCcchHhhcccccEEEEccCCH--HHHHHHHHHHHhcCC
Q 008516           83 SITAHHANVKDPKFNVEFFKQFNVVLNGLDNL--DARRHVNRLCLAADV  129 (563)
Q Consensus        83 ~I~~~~~~i~~~~~~~~~~~~~dvVi~alDn~--~ar~~in~~c~~~~~  129 (563)
                      ++....+.       .+-++++|+||++....  +.+.....+-.++|+
T Consensus        64 ~~~~~td~-------~~al~gaDvVv~ta~~~~~~~~~r~~~i~~~~gi  105 (169)
T d1s6ya1          64 EIHLTLDR-------RRALDGADFVTTQFRVGGLEARAKDERIPLKYGV  105 (169)
T ss_dssp             EEEEESCH-------HHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTC
T ss_pred             eeeecCCc-------hhhcCCCCEEEEccccCCCCCeehhhhhhhhcCc
Confidence            77766543       34578999999986543  233333444444554

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=85.32  E-value=2.1  Score=36.28  Aligned_cols=38  Identities=8%  Similarity=0.114  Sum_probs=27.9

Q ss_pred             HhhcccccEEEEccCCHHHHHHHHHHHHhcC--CCEEEecc
Q 008516           98 VEFFKQFNVVLNGLDNLDARRHVNRLCLAAD--VPLVESGT  136 (563)
Q Consensus        98 ~~~~~~~dvVi~alDn~~ar~~in~~c~~~~--~pli~~gt  136 (563)
                      .+-+++.|+|+.|+.+..++.+..+... .+  .++|+.++
T Consensus        60 ~~~~~~~DivF~a~~~~~s~~~~~~~~~-~g~~~~VID~Ss   99 (146)
T d1t4ba1          60 LEALKALDIIVTCQGGDYTNEIYPKLRE-SGWQGYWIDAAS   99 (146)
T ss_dssp             HHHHHTCSEEEECSCHHHHHHHHHHHHH-TTCCCEEEECSS
T ss_pred             hhhhhcCcEEEEecCchHHHHhhHHHHh-cCCCeecccCCc
Confidence            3457899999999998888888766654 44  45777553

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=85.14  E-value=1.9  Score=37.69  Aligned_cols=78  Identities=15%  Similarity=0.098  Sum_probs=45.7

Q ss_pred             CCcEEEECC-cHHHHHHHHHHHHhCC-C-----eEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC-CCce
Q 008516           12 GAKVLMVGA-GGIGCELLKTLALSGF-Q-----DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR-PQMS   83 (563)
Q Consensus        12 ~~~VlvvGa-GgiG~ellknLal~Gv-g-----~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~n-p~v~   83 (563)
                      -.||.|+|| |.+|..++-.|+..++ |     .|+++|-+                 -.+.+++..+-.+...- |...
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~-----------------~~~~~l~g~~mdl~d~a~~~~~   86 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSE-----------------RSFQALEGVAMELEDSLYPLLR   86 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCG-----------------GGHHHHHHHHHHHHTTTCTTEE
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCc-----------------cccchhcchhhhhccccccccc
Confidence            347999996 9999999999997654 3     34444311                 12234444444444332 2222


Q ss_pred             EEEeccCCCCCcchHhhcccccEEEEccC
Q 008516           84 ITAHHANVKDPKFNVEFFKQFNVVLNGLD  112 (563)
Q Consensus        84 I~~~~~~i~~~~~~~~~~~~~dvVi~alD  112 (563)
                      -.....+      +.+-+++.|+||.+..
T Consensus        87 ~~~~~~~------~~~~~~~aDvVvi~ag  109 (175)
T d7mdha1          87 EVSIGID------PYEVFEDVDWALLIGA  109 (175)
T ss_dssp             EEEEESC------HHHHTTTCSEEEECCC
T ss_pred             Ccccccc------chhhccCCceEEEeec
Confidence            2222221      3466799999998753

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=84.95  E-value=1.7  Score=41.35  Aligned_cols=108  Identities=11%  Similarity=0.163  Sum_probs=60.9

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCC-eEEEEeCCccCcc-cCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEec
Q 008516           12 GAKVLMVG-AGGIGCELLKTLALSGFQ-DIHIIDMDTIEVS-NLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (563)
Q Consensus        12 ~~~VlvvG-aGgiG~ellknLal~Gvg-~I~iiD~D~Ve~s-NLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~   88 (563)
                      -+||||.| .|=||+.+++.|...|-. +++.+|.  ...+ +..+                    +..+. .-+++.+.
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~--~~~~~~~~~--------------------~~~~~-~~~i~~~~   58 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDK--LTYAGNKAN--------------------LEAIL-GDRVELVV   58 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEEC--CCTTCCGGG--------------------TGGGC-SSSEEEEE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeC--CCccccHHH--------------------HHHhh-cCCeEEEE
Confidence            47899998 788999999999999853 4555552  1111 1100                    00111 12455555


Q ss_pred             cCCCCCcchHhhcccccEEEEcc-C----------------CHHHHHHHHHHHHhcCCCEEEeccccceee
Q 008516           89 ANVKDPKFNVEFFKQFNVVLNGL-D----------------NLDARRHVNRLCLAADVPLVESGTTGFLGQ  142 (563)
Q Consensus        89 ~~i~~~~~~~~~~~~~dvVi~al-D----------------n~~ar~~in~~c~~~~~pli~~gt~G~~G~  142 (563)
                      .++++...-..++..++.|+... .                |......+-+.|...++.++..++...+|.
T Consensus        59 ~Di~d~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~k~i~~ss~~vyg~  129 (346)
T d1oc2a_          59 GDIADAELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVSTDEVYGD  129 (346)
T ss_dssp             CCTTCHHHHHHHHTTCSEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGGCC
T ss_pred             ccCCCHHHHHHHHhhhhhhhhhhhcccccchhhCcccceeeehHhHHhhhhhhccccccccccccceEecc
Confidence            66644333345566666665532 1                111222333457778888888777766654

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.90  E-value=0.37  Score=42.06  Aligned_cols=30  Identities=30%  Similarity=0.488  Sum_probs=26.9

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        14 ~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      -|+|||+|-.|...|..|++.|. +++|+|.
T Consensus         7 DviViGaG~~Gl~~A~~La~~G~-~V~vlE~   36 (297)
T d2bcgg1           7 DVIVLGTGITECILSGLLSVDGK-KVLHIDK   36 (297)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-CEEEEcC
Confidence            48999999999999999999997 6888763

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=84.90  E-value=0.61  Score=42.94  Aligned_cols=36  Identities=31%  Similarity=0.553  Sum_probs=30.5

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ||+++.++|.| .+|||.++++.|+..|. ++.++|.+
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~-~V~~~~r~   38 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGA-SLVAVDRE   38 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            57889999998 56899999999999997 67887643

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=84.89  E-value=2  Score=33.35  Aligned_cols=84  Identities=20%  Similarity=0.269  Sum_probs=53.8

Q ss_pred             CCcEEEECCcHHHH-HHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccC
Q 008516           12 GAKVLMVGAGGIGC-ELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (563)
Q Consensus        12 ~~~VlvvGaGgiG~-ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~   90 (563)
                      +.||.++|.||+|- .+|+.|...|. +++--|        +...           .   ..++|++..  +++..-+  
T Consensus         1 ~~~ihfiGIgG~GMs~LA~~L~~~G~-~VsGSD--------~~~~-----------~---~t~~L~~~G--i~i~~gh--   53 (89)
T d1j6ua1           1 HMKIHFVGIGGIGMSAVALHEFSNGN-DVYGSN--------IEET-----------E---RTAYLRKLG--IPIFVPH--   53 (89)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEC--------SSCC-----------H---HHHHHHHTT--CCEESSC--
T ss_pred             CcEEEEEeECHHHHHHHHHHHHhCCC-eEEEEe--------CCCC-----------h---hHHHHHHCC--CeEEeee--
Confidence            47899999999996 77899999998 566554        2111           1   223455553  4553211  


Q ss_pred             CCCCcchHhhcccccEEEEc----cCCHHHHHHHHHHHHhcCCCEEE
Q 008516           91 VKDPKFNVEFFKQFNVVLNG----LDNLDARRHVNRLCLAADVPLVE  133 (563)
Q Consensus        91 i~~~~~~~~~~~~~dvVi~a----lDn~~ar~~in~~c~~~~~pli~  133 (563)
                            +.+.+.+.|+||-.    .||++..     .+++.++|++.
T Consensus        54 ------~~~~i~~~d~vV~SsAI~~~npel~-----~A~~~gIpv~~   89 (89)
T d1j6ua1          54 ------SADNWYDPDLVIKTPAVRDDNPEIV-----RARMERVPIEN   89 (89)
T ss_dssp             ------CTTSCCCCSEEEECTTCCTTCHHHH-----HHHHTTCCEEE
T ss_pred             ------cccccCCCCEEEEecCcCCCCHHHH-----HHHHcCCCccC
Confidence                  12335678988885    4777643     56888999863

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=84.74  E-value=0.35  Score=46.38  Aligned_cols=33  Identities=21%  Similarity=0.313  Sum_probs=28.6

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCC-eEEEEeCC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQ-DIHIIDMD   45 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg-~I~iiD~D   45 (563)
                      +||+|||+|..|..+|+.|.+.|.+ +++|++..
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~   38 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERR   38 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECC
Confidence            5799999999999999999998874 78887643

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=84.54  E-value=0.48  Score=40.77  Aligned_cols=31  Identities=16%  Similarity=0.378  Sum_probs=29.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEE
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHII   42 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~ii   42 (563)
                      ..||+|||.|-+|.+.+..+.+.|..+++++
T Consensus        45 ~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi   75 (153)
T d1gtea3          45 RGAVIVLGAGDTAFDCATSALRCGARRVFLV   75 (153)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CCEEEEECCChhHHHHHHHHHHcCCcceeEE
Confidence            4689999999999999999999999999986

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.48  E-value=0.43  Score=43.53  Aligned_cols=32  Identities=28%  Similarity=0.575  Sum_probs=28.4

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEe
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      +..||+|||+|--|-..|..|+..|. +++|+.
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~-~V~VlE   35 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGM-DVTLLE   35 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTC-EEEEEC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-CEEEEe
Confidence            46789999999999999999999998 688754

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.22  E-value=0.49  Score=41.61  Aligned_cols=30  Identities=23%  Similarity=0.252  Sum_probs=25.0

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEe
Q 008516           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        13 ~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      .+|||.| .|.+|..+++.|+..|- .++++|
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~-~v~v~~   34 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSD-KFVAKG   34 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTT-TCEEEE
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCC-cEEEEE
Confidence            5899999 69999999999999996 345554

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=84.19  E-value=0.58  Score=40.49  Aligned_cols=34  Identities=29%  Similarity=0.488  Sum_probs=30.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +.+|+|+|+|++|.-.+..+...|..++.++|.+
T Consensus        33 g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~   66 (172)
T d1h2ba2          33 GAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVK   66 (172)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred             CCEEEEeCCChHHHHHHHHHHhhcCcccccccch
Confidence            5679999999999999999999999999988744

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=84.18  E-value=1.8  Score=36.84  Aligned_cols=77  Identities=16%  Similarity=0.095  Sum_probs=46.7

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCCC-e-----EEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC-ceE
Q 008516           13 AKVLMVGA-GGIGCELLKTLALSGFQ-D-----IHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ-MSI   84 (563)
Q Consensus        13 ~~VlvvGa-GgiG~ellknLal~Gvg-~-----I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~-v~I   84 (563)
                      .||.|+|| |.+|+.++-.|+..++. .     +.++|                 .+....|.+..+..+...... .+-
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~   67 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLE-----------------IPQAMKALEGVVMELEDCAFPLLAG   67 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEEC-----------------CGGGHHHHHHHHHHHHTTTCTTEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhc-----------------cccchhhHcCchhhhhccccccccc
Confidence            38999997 99999999999988763 2     23322                 122334555555555544322 221


Q ss_pred             EEeccCCCCCcchHhhcccccEEEEccC
Q 008516           85 TAHHANVKDPKFNVEFFKQFNVVLNGLD  112 (563)
Q Consensus        85 ~~~~~~i~~~~~~~~~~~~~dvVi~alD  112 (563)
                      .....      .+.+-+++.|+||.+..
T Consensus        68 ~~~~~------~~~~~~~~advViitaG   89 (154)
T d1y7ta1          68 LEATD------DPKVAFKDADYALLVGA   89 (154)
T ss_dssp             EEEES------CHHHHTTTCSEEEECCC
T ss_pred             cccCC------chhhhcccccEEEeecC
Confidence            11111      13466899999999753

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=84.01  E-value=0.4  Score=44.31  Aligned_cols=30  Identities=33%  Similarity=0.471  Sum_probs=27.7

Q ss_pred             EEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           15 VLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        15 VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      |+|||+|-.|+.+|..|++.|. +++|+|..
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~-~V~viE~~   35 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGV-KTLLVDAF   35 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCC
Confidence            8999999999999999999997 68998864

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=83.79  E-value=3.1  Score=35.29  Aligned_cols=38  Identities=16%  Similarity=0.182  Sum_probs=28.5

Q ss_pred             hHhhcccccEEEEccCCHHHHHHHHHHHHhcC--CCEEEec
Q 008516           97 NVEFFKQFNVVLNGLDNLDARRHVNRLCLAAD--VPLVESG  135 (563)
Q Consensus        97 ~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~--~pli~~g  135 (563)
                      +.+.+++.|+|+.|+.+..++.+..++. +.+  .++||-+
T Consensus        58 ~~~~~~~~DvvF~alp~~~s~~~~~~l~-~~g~~~~VIDlS   97 (147)
T d1mb4a1          58 DIESLKQLDAVITCQGGSYTEKVYPALR-QAGWKGYWIDAA   97 (147)
T ss_dssp             CHHHHTTCSEEEECSCHHHHHHHHHHHH-HTTCCSEEEESS
T ss_pred             chhhhccccEEEEecCchHHHHHhHHHH-HcCCceEEEeCC
Confidence            3456799999999999988888876664 444  3578754

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.75  E-value=0.28  Score=47.10  Aligned_cols=40  Identities=23%  Similarity=0.388  Sum_probs=33.9

Q ss_pred             HHHcCCcEEEECCcHHHHHHHHHHHHhCC----------CeEEEEeCCcc
Q 008516            8 EAIKGAKVLMVGAGGIGCELLKTLALSGF----------QDIHIIDMDTI   47 (563)
Q Consensus         8 ~kL~~~~VlvvGaGgiG~ellknLal~Gv----------g~I~iiD~D~V   47 (563)
                      .+|.+.||++.|+|+-|.-+++.|+.+++          ++|.++|.+-+
T Consensus        21 k~l~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Gl   70 (294)
T d1pj3a1          21 KPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGL   70 (294)
T ss_dssp             CCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEE
T ss_pred             CCHHHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCC
Confidence            36889999999999999999999887754          47999998654

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=83.70  E-value=0.37  Score=44.84  Aligned_cols=35  Identities=23%  Similarity=0.336  Sum_probs=30.4

Q ss_pred             HHcCCcEEEECC-c--HHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVGA-G--GIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvGa-G--giG~ellknLal~Gvg~I~iiD~   44 (563)
                      +|++++++|.|+ |  |||-++++.|+..|. ++.++|.
T Consensus         2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga-~V~i~~r   39 (274)
T d2pd4a1           2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYL   39 (274)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEES
T ss_pred             cCCCCEEEEECCCCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            478999999996 4  799999999999998 5888874

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=83.67  E-value=0.88  Score=40.12  Aligned_cols=81  Identities=17%  Similarity=0.230  Sum_probs=50.4

Q ss_pred             cEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCC
Q 008516           14 KVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK   92 (563)
Q Consensus        14 ~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~   92 (563)
                      ||.|+| .|-+|.|+++.|...-  ++.|.             +++..+..|+.=.+        ..|+.. .  ...+.
T Consensus         3 kVaIvGATGyvG~eLirlL~~HP--~~ei~-------------~l~s~~~aG~~i~~--------~~p~~~-~--~~~~~   56 (176)
T d1vkna1           3 RAGIIGATGYTGLELVRLLKNHP--EAKIT-------------YLSSRTYAGKKLEE--------IFPSTL-E--NSILS   56 (176)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHCT--TEEEE-------------EEECSTTTTSBHHH--------HCGGGC-C--CCBCB
T ss_pred             EEEEECCCcHHHHHHHHHHHhCC--CceEE-------------EeeccccCCCcccc--------cCchhh-c--ccccc
Confidence            799999 5778999999998643  45543             24556677775433        333321 0  01111


Q ss_pred             CCcchHhhcccccEEEEccCCHHHHHHHH
Q 008516           93 DPKFNVEFFKQFNVVLNGLDNLDARRHVN  121 (563)
Q Consensus        93 ~~~~~~~~~~~~dvVi~alDn~~ar~~in  121 (563)
                      . ...+++.++.|+|+.|+.+-.++.++.
T Consensus        57 ~-~~~~~~~~~~dvvf~a~p~~~s~~~~~   84 (176)
T d1vkna1          57 E-FDPEKVSKNCDVLFTALPAGASYDLVR   84 (176)
T ss_dssp             C-CCHHHHHHHCSEEEECCSTTHHHHHHT
T ss_pred             c-cCHhHhccccceEEEccccHHHHHHHH
Confidence            1 122455678999999999987776653

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=83.57  E-value=0.4  Score=42.68  Aligned_cols=35  Identities=31%  Similarity=0.429  Sum_probs=30.2

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      |.+++|.|+|+|.||.++++.|...|. ++...|..
T Consensus        42 l~~~~vgiiG~G~IG~~va~~l~~fg~-~v~~~d~~   76 (188)
T d2naca1          42 LEAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRH   76 (188)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSS
T ss_pred             ccccceeeccccccchhhhhhhhccCc-eEEEEeec
Confidence            578899999999999999999998887 57777754

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=83.39  E-value=0.4  Score=39.60  Aligned_cols=85  Identities=16%  Similarity=0.130  Sum_probs=53.0

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCCC
Q 008516           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK   92 (563)
Q Consensus        13 ~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i~   92 (563)
                      ++|+|+|.|.+|.++++.|...   ++.++|.|.-                   +.+.    ++.  .++  ..+.++.+
T Consensus         1 kHivI~G~g~~g~~l~~~L~~~---~i~vi~~d~~-------------------~~~~----~~~--~~~--~~i~Gd~~   50 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELRGS---EVFVLAEDEN-------------------VRKK----VLR--SGA--NFVHGDPT   50 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSCGG---GEEEEESCTT-------------------HHHH----HHH--TTC--EEEESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHcCC---CCEEEEcchH-------------------HHHH----HHh--cCc--cccccccC
Confidence            5799999999999999998543   4677775432                   2221    121  123  34445554


Q ss_pred             CC-cchHhhcccccEEEEccCCHHHHHHHHHHHHhc
Q 008516           93 DP-KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA  127 (563)
Q Consensus        93 ~~-~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~  127 (563)
                      +. .+...-+.+++.|+.++++...-..+-..++..
T Consensus        51 ~~~~L~~a~i~~A~~vi~~~~~d~~n~~~~~~~r~~   86 (129)
T d2fy8a1          51 RVSDLEKANVRGARAVIVNLESDSETIHCILGIRKI   86 (129)
T ss_dssp             SHHHHHHTTCTTCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred             CHHHHHHhhhhcCcEEEEeccchhhhHHHHHHHHHH
Confidence            32 122233678899999998877666665555554

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=83.32  E-value=0.74  Score=40.42  Aligned_cols=34  Identities=32%  Similarity=0.535  Sum_probs=30.6

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +-++|+|+|+|-.|-..+.....+|. +++++|.+
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~   64 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDIN   64 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCc
Confidence            57899999999999999999999995 79999843

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=82.74  E-value=0.54  Score=41.91  Aligned_cols=35  Identities=14%  Similarity=0.217  Sum_probs=30.6

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~   46 (563)
                      .+..++|||+|..|.+.+..+++.|. +++|||.+.
T Consensus         4 ~~~DlvVIG~GpaGl~aA~~aa~~G~-~V~liE~~~   38 (220)
T d1lvla1           4 IQTTLLIIGGGPGGYVAAIRAGQLGI-PTVLVEGQA   38 (220)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTC-CEEEECSSC
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence            35679999999999999999999997 688988654

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.71  E-value=0.75  Score=43.90  Aligned_cols=36  Identities=28%  Similarity=0.461  Sum_probs=30.1

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +|+++.++|-| .+|||-++++.|+..|. ++.+.|.+
T Consensus         4 ~l~gKvalITGas~GIG~aiA~~la~~Ga-~Vvi~d~~   40 (302)
T d1gz6a_           4 RFDGRVVLVTGAGGGLGRAYALAFAERGA-LVVVNDLG   40 (302)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCC
T ss_pred             CcCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCC
Confidence            46777888887 67999999999999997 68888744

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=82.61  E-value=0.54  Score=44.22  Aligned_cols=36  Identities=31%  Similarity=0.638  Sum_probs=31.2

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      ||+++.++|-| .+|||.++++.|+..|. ++.++|.+
T Consensus         2 ~L~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~   38 (276)
T d1bdba_           2 KLKGEAVLITGGASGLGRALVDRFVAEGA-KVAVLDKS   38 (276)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            47888999998 58999999999999997 78888743

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=82.53  E-value=0.69  Score=41.02  Aligned_cols=35  Identities=26%  Similarity=0.411  Sum_probs=30.3

Q ss_pred             HcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        10 L~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      |.+++|.|+|.|.+|.++++-+...|+ ++...|.+
T Consensus        42 l~~~~vgiiG~G~IG~~va~~l~~fg~-~v~~~d~~   76 (188)
T d1sc6a1          42 ARGKKLGIIGYGHIGTQLGILAESLGM-YVYFYDIE   76 (188)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             ccceEEEEeecccchhhhhhhcccccc-eEeecccc
Confidence            788999999999999999999888877 57777754

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=82.45  E-value=1.5  Score=37.35  Aligned_cols=24  Identities=33%  Similarity=0.533  Sum_probs=20.9

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCC
Q 008516           13 AKVLMVGA-GGIGCELLKTLALSGF   36 (563)
Q Consensus        13 ~~VlvvGa-GgiG~ellknLal~Gv   36 (563)
                      .||.|+|| |.+|+.++-.|+..++
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~   28 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSV   28 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTT
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHh
Confidence            48999996 9999999999986665

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=82.35  E-value=0.57  Score=41.54  Aligned_cols=32  Identities=19%  Similarity=0.365  Sum_probs=28.3

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (563)
Q Consensus        14 ~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D~   46 (563)
                      -|+|||+|..|.+.+..+++.|. ++.|||.+.
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G~-kV~iiE~~~   35 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYGQ-KCALIEAKE   35 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTC-CEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-EEEEEeccC
Confidence            48999999999999999999997 689988654

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=82.30  E-value=0.85  Score=41.59  Aligned_cols=103  Identities=17%  Similarity=0.226  Sum_probs=57.3

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEeccCC
Q 008516           13 AKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (563)
Q Consensus        13 ~~VlvvGa-GgiG~ellknLal~Gvg~I~iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~~i   91 (563)
                      +||||.|+ |-||+.+++.|...|. ++..+|...++              +.-  .+.+.+.++...|++-+++  ...
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~-~Vi~~~r~~~D--------------~~d--~~~~~~~l~~~~~d~vih~--a~~   62 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNV-EVIPTDVQDLD--------------ITN--VLAVNKFFNEKKPNVVINC--AAH   62 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSE-EEEEECTTTCC--------------TTC--HHHHHHHHHHHCCSEEEEC--CCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC-EEEEeechhcc--------------CCC--HHHHHHHHHHcCCCEEEee--ccc
Confidence            58999996 9999999999998887 46666644332              222  2345566777777654432  111


Q ss_pred             CCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEeccccc
Q 008516           92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGF  139 (563)
Q Consensus        92 ~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~gt~G~  139 (563)
                      ...   .......+..  ...|......+...+......++...+.+.
T Consensus        63 ~~~---~~~~~~~~~~--~~~n~~~~~~~~~~~~~~~~~~~~~ss~~v  105 (281)
T d1vl0a_          63 TAV---DKCEEQYDLA--YKINAIGPKNLAAAAYSVGAEIVQISTDYV  105 (281)
T ss_dssp             CCH---HHHHHCHHHH--HHHHTHHHHHHHHHHHHHTCEEEEEEEGGG
T ss_pred             ccc---ccccccchhh--ccccccccccccccccccccccccccccee
Confidence            110   0000000000  011234445566677777777776655443

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=81.98  E-value=2.1  Score=37.05  Aligned_cols=88  Identities=17%  Similarity=0.138  Sum_probs=51.5

Q ss_pred             cCCcEEEECCcHHHHH-HHHHHHHhC-CCeEE-EEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEe
Q 008516           11 KGAKVLMVGAGGIGCE-LLKTLALSG-FQDIH-IIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~e-llknLal~G-vg~I~-iiD~D~Ve~sNLnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~   87 (563)
                      ++.||.|||+|.+|.. .+..+...+ .-+|+ +.|.+                   ..|++.+++..   + ...+  +
T Consensus         2 kkirigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~-------------------~~~~~~~~~~~---~-~~~~--~   56 (181)
T d1zh8a1           2 RKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRT-------------------RSHAEEFAKMV---G-NPAV--F   56 (181)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSS-------------------HHHHHHHHHHH---S-SCEE--E
T ss_pred             CCcEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEecc-------------------Hhhhhhhhccc---c-ccce--e
Confidence            4568999999999987 477776543 22443 44432                   23444333332   2 2222  1


Q ss_pred             ccCCCCCcchHhhc--ccccEEEEccCCHHHHHHHHHHHHhcCCCE
Q 008516           88 HANVKDPKFNVEFF--KQFNVVLNGLDNLDARRHVNRLCLAADVPL  131 (563)
Q Consensus        88 ~~~i~~~~~~~~~~--~~~dvVi~alDn~~ar~~in~~c~~~~~pl  131 (563)
                       .++      .+++  .+.|+|+.++.+ .....+-..+.++++++
T Consensus        57 -~~~------~ell~~~~id~v~I~tp~-~~h~~~~~~al~~gk~V   94 (181)
T d1zh8a1          57 -DSY------EELLESGLVDAVDLTLPV-ELNLPFIEKALRKGVHV   94 (181)
T ss_dssp             -SCH------HHHHHSSCCSEEEECCCG-GGHHHHHHHHHHTTCEE
T ss_pred             -eee------eccccccccceeeccccc-cccccccccccccchhh
Confidence             111      2334  358999998875 45666667788888864

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=81.88  E-value=0.55  Score=42.39  Aligned_cols=33  Identities=21%  Similarity=0.314  Sum_probs=28.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeCC
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~D   45 (563)
                      +--|+|||+|..|...|..|++.|. +++|+|..
T Consensus         2 ~yDViIIGaG~aGl~aA~~la~~G~-~V~liEk~   34 (251)
T d2i0za1           2 HYDVIVIGGGPSGLMAAIGAAEEGA-NVLLLDKG   34 (251)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCC-cEEEEeCC
Confidence            3469999999999999999999998 68888853

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=81.88  E-value=0.61  Score=42.96  Aligned_cols=35  Identities=34%  Similarity=0.500  Sum_probs=30.3

Q ss_pred             HHcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      +|++++++|-| .+|||.++++.|+..|. ++.++|.
T Consensus         2 ~L~gK~~lITGas~GIG~aia~~l~~~G~-~V~~~~r   37 (242)
T d1ulsa_           2 RLKDKAVLITGAAHGIGRATLELFAKEGA-RLVACDI   37 (242)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            47888899998 57999999999999997 6888874

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=81.76  E-value=0.58  Score=41.83  Aligned_cols=35  Identities=23%  Similarity=0.286  Sum_probs=29.2

Q ss_pred             HHcCCcEEEECCcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus         9 kL~~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      .|+++++.|||.|.||.++++.+...|+. +...|.
T Consensus        44 ~l~g~tvgIiG~G~IG~~va~~l~~fg~~-v~~~d~   78 (191)
T d1gdha1          44 KLDNKTLGIYGFGSIGQALAKRAQGFDMD-IDYFDT   78 (191)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCE-EEEECS
T ss_pred             eecccceEEeecccchHHHHHHHHhhccc-cccccc
Confidence            45689999999999999999999888874 556663

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.61  E-value=0.67  Score=42.42  Aligned_cols=34  Identities=26%  Similarity=0.509  Sum_probs=29.7

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~   44 (563)
                      |+++.++|.| ++|||.++++.|+..|. ++.++|.
T Consensus         3 lkGKvalITGas~GIG~aia~~la~~G~-~V~~~~r   37 (248)
T d2o23a1           3 VKGLVAVITGGASGLGLATAERLVGQGA-SAVLLDL   37 (248)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            6778888887 78999999999999998 6888874

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=81.51  E-value=0.44  Score=43.44  Aligned_cols=110  Identities=16%  Similarity=0.226  Sum_probs=64.4

Q ss_pred             cCCcEEEECCcHHHHHHHHHHHHhCCC--eEEEEeCCccCcccCccc--cCCCCC---CC-CchHHHHHHHHHHhhCCCc
Q 008516           11 KGAKVLMVGAGGIGCELLKTLALSGFQ--DIHIIDMDTIEVSNLNRQ--FLFRQS---HV-GQSKAKVARDAVLKFRPQM   82 (563)
Q Consensus        11 ~~~~VlvvGaGgiG~ellknLal~Gvg--~I~iiD~D~Ve~sNLnRq--fLf~~~---di-Gk~Ka~va~~~l~~~np~v   82 (563)
                      .+.||.|||+||-||.++..|.+.|+.  ++..+|.|.-..+...-+  .+....   .. .....++.++...+--   
T Consensus        14 ~~~ki~ViGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~g~Gag~~p~~g~~aa~e~~---   90 (209)
T d2vapa1          14 TKAKITVVGCGGAGNNTITRLKMEGIEGAKTVAINTDAQQLIRTKADKKILIGKKLTRGLGAGGNPKIGEEAAKESA---   90 (209)
T ss_dssp             TCCCEEEEEEHHHHHHHHHHHHHHTCTTEEEEEEESBHHHHHTSCCSEEEECCTTTTTTBCCTTCHHHHHHHHHHTH---
T ss_pred             cCCcEEEEEeCChHHHHHHHHHHcCCCceEEEEEeCCHHHHhcCCcchhcccccccccccccccchHHHHHHHHHHH---
Confidence            568999999999999999999999986  456778887776655311  122211   11 1122233333332211   


Q ss_pred             eEEEeccCCCCCcchHhhcccccEEEEc--cCC---HHHHHHHHHHHHhcCCCEEEec
Q 008516           83 SITAHHANVKDPKFNVEFFKQFNVVLNG--LDN---LDARRHVNRLCLAADVPLVESG  135 (563)
Q Consensus        83 ~I~~~~~~i~~~~~~~~~~~~~dvVi~a--lDn---~~ar~~in~~c~~~~~pli~~g  135 (563)
                                  ..-.+.++++|+|+-+  +.-   --+-..+.++++..+++.+...
T Consensus        91 ------------~~I~~~l~~~d~vfi~AGlGGGTGsgaapvia~~ake~g~lvv~iv  136 (209)
T d2vapa1          91 ------------EEIKAAIQDSDMVFITCGLGGGTGTGSAPVVAEISKKIGALTVAVV  136 (209)
T ss_dssp             ------------HHHHHHHTTCSEEEEEEETTSSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             ------------HHHHHhccCCCEEEEEEeCCCCccccHHHHHHHHHHHcCCcEEEEE
Confidence                        0012345677766553  221   2245567888888877665443

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=81.45  E-value=1.3  Score=40.46  Aligned_cols=38  Identities=16%  Similarity=0.399  Sum_probs=32.0

Q ss_pred             HHcCCcEEEECC-c--HHHHHHHHHHHHhCCCeEEEEeCCcc
Q 008516            9 AIKGAKVLMVGA-G--GIGCELLKTLALSGFQDIHIIDMDTI   47 (563)
Q Consensus         9 kL~~~~VlvvGa-G--giG~ellknLal~Gvg~I~iiD~D~V   47 (563)
                      +|++++++|.|+ |  |||-++++.|+..|. +|.+.+.|.-
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga-~Vil~~~~~~   43 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFDRL   43 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTC-EEEEEECSCH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCC-EEEEEeCChH
Confidence            478999999996 4  599999999999996 6888886653

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=81.33  E-value=0.49  Score=44.88  Aligned_cols=29  Identities=21%  Similarity=0.348  Sum_probs=26.3

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCeEEEEe
Q 008516           14 KVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        14 ~VlvvGaGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      .|+|||||-.|+.+|..|+..|. +++|+|
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~-~V~iiE   31 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNK-KVLVIE   31 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTC-CEEEEC
T ss_pred             cEEEECCcHHHHHHHHHHHhCCC-cEEEEE
Confidence            58999999999999999999996 688876

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.30  E-value=0.84  Score=39.27  Aligned_cols=31  Identities=35%  Similarity=0.430  Sum_probs=26.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEe
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      +.+|+|+|+|++|...+..+...|. ++.++|
T Consensus        28 g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~   58 (168)
T d1piwa2          28 GKKVGIVGLGGIGSMGTLISKAMGA-ETYVIS   58 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTC-EEEEEE
T ss_pred             CCEEEEECCCCcchhHHHHhhhccc-cccccc
Confidence            5789999999999999998889998 566776

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.15  E-value=0.88  Score=38.84  Aligned_cols=31  Identities=29%  Similarity=0.466  Sum_probs=27.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCeEEEEe
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~I~iiD   43 (563)
                      ..+|+|+|+|++|.-.+..+...| .++..+|
T Consensus        28 g~~VlV~GaG~vG~~~~~~ak~~G-~~Vi~~~   58 (166)
T d1llua2          28 GQWVAISGIGGLGHVAVQYARAMG-LHVAAID   58 (166)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred             CCEEEEeeccccHHHHHHHHHHcC-Cccceec
Confidence            567999999999999999998999 4787776

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=80.78  E-value=0.76  Score=41.97  Aligned_cols=36  Identities=25%  Similarity=0.458  Sum_probs=31.3

Q ss_pred             HcCCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCc
Q 008516           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDT   46 (563)
Q Consensus        10 L~~~~VlvvG-aGgiG~ellknLal~Gvg~I~iiD~D~   46 (563)
                      |++++++|-| .+|||.++++.|+..|. ++.++|.+.
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga-~V~~~~r~~   38 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNE   38 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            6788999998 58999999999999997 688888653

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.52  E-value=0.94  Score=39.15  Aligned_cols=31  Identities=23%  Similarity=0.424  Sum_probs=25.0

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCeEEEE
Q 008516           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHII   42 (563)
Q Consensus        12 ~~~VlvvG-aGgiG~ellknLal~Gvg~I~ii   42 (563)
                      +.+|+|.| +|++|...+..+...|...|.++
T Consensus        26 g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~   57 (183)
T d1pqwa_          26 GERVLIHSATGGVGMAAVSIAKMIGARIYTTA   57 (183)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCEEEEECCCCCcccccchhhccccccceeee
Confidence            46788878 59999999999999998666554

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=80.43  E-value=0.52  Score=45.23  Aligned_cols=41  Identities=17%  Similarity=0.363  Sum_probs=34.4

Q ss_pred             HHHcCCcEEEECCcHHHHHHHHHHHHh----------CCCeEEEEeCCccC
Q 008516            8 EAIKGAKVLMVGAGGIGCELLKTLALS----------GFQDIHIIDMDTIE   48 (563)
Q Consensus         8 ~kL~~~~VlvvGaGgiG~ellknLal~----------Gvg~I~iiD~D~Ve   48 (563)
                      .+|.+.||++.|+|+-|+-+++.|+..          |.++|.++|.+-+=
T Consensus        21 k~l~d~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGlv   71 (298)
T d1gq2a1          21 NRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLI   71 (298)
T ss_dssp             SCGGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEEC
T ss_pred             CCHHHcEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCCcc
Confidence            358899999999999999999999865          45689999976553

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=80.38  E-value=2.1  Score=37.37  Aligned_cols=107  Identities=11%  Similarity=0.032  Sum_probs=54.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhC-CCeEEEEeCCccCccc-CccccCCCCCCCCchHHHHHHHHHHhhCCCceEEEecc
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSG-FQDIHIIDMDTIEVSN-LNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~G-vg~I~iiD~D~Ve~sN-LnRqfLf~~~diGk~Ka~va~~~l~~~np~v~I~~~~~   89 (563)
                      ..||.|.|.|.||--+++.|.... +.-+.|-|...-+... +.+. -+........+.....+    .           
T Consensus         2 ~irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~----~-----------   65 (172)
T d2czca2           2 KVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKEL-GIPVYAASEEFIPRFEK----E-----------   65 (172)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHT-TCCEEESSGGGHHHHHH----H-----------
T ss_pred             cEEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhc-Cceeecccccceeeecc----c-----------
Confidence            568999999999999999886543 2223333422111000 0000 00000000111111000    0           


Q ss_pred             CCCCCcchHhhcccccEEEEccCCHHHHHHHHHHHHhcCCCEEEec
Q 008516           90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG  135 (563)
Q Consensus        90 ~i~~~~~~~~~~~~~dvVi~alDn~~ar~~in~~c~~~~~pli~~g  135 (563)
                      .+.......+++++.|+|+.|+.....+.... ....+++..|-.+
T Consensus        66 ~~~~~~~~~~~~~~vDvViEcTG~f~~~~~~~-~hl~~G~k~Vi~s  110 (172)
T d2czca2          66 GFEVAGTLNDLLEKVDIIVDATPGGIGAKNKP-LYEKAGVKAIFQG  110 (172)
T ss_dssp             TCCCSCBHHHHHTTCSEEEECCSTTHHHHHHH-HHHHHTCEEEECT
T ss_pred             CccccchhhhhhccCCEEEECCCCCCCHHHHH-HHHHcCCCEEEEC
Confidence            00111123455679999999999887776654 3455666666544

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=80.16  E-value=3.6  Score=37.30  Aligned_cols=29  Identities=34%  Similarity=0.702  Sum_probs=25.3

Q ss_pred             EEEECC-cHHHHHHHHHHHHhCCCeEEEEe
Q 008516           15 VLMVGA-GGIGCELLKTLALSGFQDIHIID   43 (563)
Q Consensus        15 VlvvGa-GgiG~ellknLal~Gvg~I~iiD   43 (563)
                      |||.|+ |=||+.+++.|...|...++.+|
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d   31 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVD   31 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEE
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEE
Confidence            788885 55999999999999988899987

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.08  E-value=0.36  Score=41.21  Aligned_cols=27  Identities=37%  Similarity=0.631  Sum_probs=24.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCe
Q 008516           12 GAKVLMVGAGGIGCELLKTLALSGFQD   38 (563)
Q Consensus        12 ~~~VlvvGaGgiG~ellknLal~Gvg~   38 (563)
                      .+||+|||+|.+|++++..+++.|...
T Consensus        29 gkrVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          29 GNKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             CSEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             CCceEEEcCchhHHHHHHHHHHcCCcc
Confidence            468999999999999999999999753