Citrus Sinensis ID: 008522

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560---
MGMNEQAVDDTCIGNPEPDKGYLHEVTLSSGIDMQEKQIDCTMTVLTRVDLDLAYSSEKLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVLILLHL
ccccHHHHHHHHcccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
cccccccccccccccccccccccEEEEEcccccccHHHHHHHHHHEEEEEEcEHHHHHHHHHHHHHHHHHHHHcccccHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
mgmneqavddtcignpepdkgylhevtlssgidmqekqidctMTVLTRVDLDLAYSSEKLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIhgnndealefsangqlsningkskmknADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINflkgnndsntkkvGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSkaesktesVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVLILLHL
mgmneqavddtcignpepdKGYLHEVTLSSGIDMQEKQIDCTMTVLTRVDLDLAYSSEKLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEivnvhhkissckHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLestknsevltmkEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINflkgnndsntkkVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSkaesktesveeqcivlsednfelknkqsfMRDKIKILESslnraniekaasakevnhRTKLMMEMVMQLATQRELIQKQVLILLHL
MGMNEQAVDDTCIGNPEPDKGYLHEVTLSSGIDMQEKQIDCTMTVLTRVDLDLAYSSEKlvnlhvllmyllARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVLILLHL
*********************YLHEVTLSSGIDMQEKQIDCTMTVLTRVDLDLAYSSEKLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKM**************************KFQRVLSYFIHGNND**********************************************************LKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGS*************FI**********************************************************************************************************************************************LYSAIWDMETLIE*******************CIVLS******************I***********************KLMMEMVMQLATQRELIQKQVLILL**
******A*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************VLILLHL
*********DTCIGNPEPDKGYLHEVTLSSGIDMQEKQIDCTMTVLTRVDLDLAYSSEKLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHD*****************QSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESL****************LTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQL**************SMLYSAIWDMETLIEDLK**************EQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVLILLHL
******AVDDTCIGNPEPDKGYLHEVTLSSGIDMQEKQIDCTMTVLTRVDLDLAYSSEKLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIHGN************************ADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVLILLHL
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MGMNEQAVDDTCIGNPEPDKGYLHEVTLSSGIDMQEKQIDCTMTVLTRVDLDLAYSSEKLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIxxxxxxxxxxxxxxxxxxxxxVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSExxxxxxxxxxxxxxxxxxxxxxxxxxxxFQTSQEQLNEMDNFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxINFLKGNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQSMLYSAxxxxxxxxxxxxxxxxxxxxxxxxxxxxCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVLILLHL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query563 2.2.26 [Sep-21-2011]
A8MQR0627 WPP domain-interacting ta yes no 0.891 0.800 0.546 1e-139
Q8L7E5703 WPP domain-interacting ta no no 0.953 0.763 0.391 4e-92
>sp|A8MQR0|WIT2_ARATH WPP domain-interacting tail-anchored protein 2 OS=Arabidopsis thaliana GN=WIT2 PE=1 SV=1 Back     alignment and function desciption
 Score =  495 bits (1274), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 288/527 (54%), Positives = 389/527 (73%), Gaps = 25/527 (4%)

Query: 43  MTVLTRVDLDLAYSSEKLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLF 102
           + +LT++++D AY+SEKL+NLHVLLM+LLA  +DLE   M   D +  S EKAL +DLL 
Sbjct: 24  LRMLTKLEIDSAYTSEKLMNLHVLLMHLLAWDNDLEG--MGTLDSSPASFEKALTFDLLC 81

Query: 103 GILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQE 162
           GIL+SE++EV+ +LD +  +IV+  +KISSCKH   +      +E KL +   SLK+S+ 
Sbjct: 82  GILESEVKEVDEVLDVLEAQIVDTSYKISSCKHGNYIV-----IEGKLGESAESLKQSRG 136

Query: 163 HVSELKMQSAKFQRVLSYFIHGN--NDEALEFSANGQLSNINGKSKMKNAD-QQRHILRM 219
            VSE+ +Q A+ +R L Y  +G   N+E++E         +  K  +K +D + ++ LRM
Sbjct: 137 QVSEITLQLAQLRRTLHYIRNGTSENEESVE---------LRQKYALKPSDLRHKNALRM 187

Query: 220 LEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVL 279
           LEKSL+REL+LEKK+ E  QNEEQLKLKLH+TE+V+ RMEEA+E +WGRFLEA+NS+EVL
Sbjct: 188 LEKSLSRELELEKKLMEFQQNEEQLKLKLHYTEEVSSRMEEASEFIWGRFLEADNSSEVL 247

Query: 280 MGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKN------ 333
            GISKE++GR QI+QF+LNGS QRESELKSKL D   QL+AKD+++QKLE T +      
Sbjct: 248 TGISKELVGRLQILQFSLNGSAQRESELKSKLEDCTVQLEAKDLLVQKLEGTISENSEIV 307

Query: 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAE 393
           SEVLT++E VKS E++LK +++ L++ NA  Q     L EM+N  ES+KE+L+ AESRAE
Sbjct: 308 SEVLTLREYVKSAEQKLKNTDLELKSVNASKQEILVHLAEMENANESVKENLFEAESRAE 367

Query: 394 SAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQE 453
           S E K+ +L   NLEL+EE+NFLK  +D  TKKV  LE Q+R+LE+Q+Q +KVSSEA+QE
Sbjct: 368 SGEAKIKELDAANLELTEELNFLKDADDKKTKKVNSLEKQVRELEVQVQNSKVSSEANQE 427

Query: 454 QQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKI 513
           QQ+MLYSAIWDMETLIEDLKSK SKAES+TE+VEEQCIVLS  N EL    SF+R K K 
Sbjct: 428 QQNMLYSAIWDMETLIEDLKSKASKAESRTETVEEQCIVLSTTNSELNKDVSFLRQKAKS 487

Query: 514 LESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVLIL 560
           LE+ L+ AN EK   A+E+  R K++M+M++QL+++RE IQ+Q+  L
Sbjct: 488 LEAMLDLANNEKERYAQEITTRNKVLMDMMLQLSSERERIQEQLYSL 534
Together with WIT1, required for the nuclear envelope docking of RANGAP proteins in root tips.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8L7E5|WIT1_ARATH WPP domain-interacting tail-anchored protein 1 OS=Arabidopsis thaliana GN=WIT1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query563
255547013601 conserved hypothetical protein [Ricinus 0.982 0.920 0.611 1e-179
297738216 735 unnamed protein product [Vitis vinifera] 0.952 0.729 0.599 1e-173
359473487629 PREDICTED: WPP domain-interacting tail-a 0.946 0.847 0.589 1e-172
147817708 745 hypothetical protein VITISV_040555 [Viti 0.934 0.706 0.583 1e-168
224111830502 predicted protein [Populus trichocarpa] 0.879 0.986 0.625 1e-162
449463561589 PREDICTED: WPP domain-interacting tail-a 0.934 0.893 0.559 1e-153
356502676607 PREDICTED: WPP domain-interacting tail-a 0.920 0.853 0.537 1e-148
356498101607 PREDICTED: WPP domain-interacting tail-a 0.898 0.833 0.541 1e-142
12323223534 unknown protein [Arabidopsis thaliana] 0.889 0.938 0.549 1e-138
145327191582 WPP domain-interacting tail-anchored pro 0.891 0.862 0.546 1e-137
>gi|255547013|ref|XP_002514564.1| conserved hypothetical protein [Ricinus communis] gi|223546168|gb|EEF47670.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  634 bits (1636), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 347/567 (61%), Positives = 428/567 (75%), Gaps = 14/567 (2%)

Query: 3   MNEQAVDDTCIGNPEPDKGYLHEVTLSSGIDMQEKQIDCTMTVLTRVDLDLAYSSEKLVN 62
           M+  ++   C  N E  KGY+ +  LS G   Q+  I+ TM VLTR DLDL +SSEKLVN
Sbjct: 1   MDGYSIAQACTINAESGKGYVDDGNLSGGRGTQD--IESTMEVLTRADLDLGFSSEKLVN 58

Query: 63  LHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVE 122
           LH LLM+LLA  ++LE +  E S ++ATS+E+AL +DLL GILDSELR VE   D I  E
Sbjct: 59  LHGLLMHLLAWDNNLEVMA-EYSYISATSVERALEFDLLSGILDSELRVVENFTDNIQAE 117

Query: 123 IVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFI 182
           IV+  HKISSC+H  ++  I+EK   KL D E SLK++QE   E KMQ+ K QR  S F 
Sbjct: 118 IVDARHKISSCRHSAKLVAIIEK---KLRDSEESLKKTQERFIEAKMQTVKLQRFFSAFK 174

Query: 183 HGN--NDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLARELDLEKKISELNQN 240
             N  +D + E SANGQL NI   SK   A+Q+RHILRMLEK LARELDLEK +SEL +N
Sbjct: 175 LENWKDDNSTELSANGQLPNIKTNSKRHTAEQKRHILRMLEKCLARELDLEKNLSELRRN 234

Query: 241 EEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGS 300
           EEQLKLKLH+TEQVA  MEEAAEVVWGRFLEAEN+AEVLMGISKEM GR QI QFNLNGS
Sbjct: 235 EEQLKLKLHYTEQVALHMEEAAEVVWGRFLEAENAAEVLMGISKEMAGRLQIFQFNLNGS 294

Query: 301 LQRESELKSKLGDFIEQLKAKDMVLQKLES------TKNSEVLTMKEKVKSLEEQLKESE 354
            QRE+ELKS+L   +EQL AKD  L+KLE        K+S+V ++ EKV SLEEQLK SE
Sbjct: 295 FQREAELKSQLHSCLEQLDAKDAALKKLEGKIGEHIAKSSQVPSLMEKVNSLEEQLKRSE 354

Query: 355 IRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 414
           +RL++AN   + SQEQ++EM + +E +KES+Y AESRAE+AE KVTQLTDTN ELS+EI+
Sbjct: 355 LRLKHANDFIEESQEQVSEMVSIVEKMKESIYEAESRAETAEAKVTQLTDTNSELSDEIS 414

Query: 415 FLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKS 474
           FLK + +SNTKKV +LE Q+R+LEIQ+Q +K SSEASQEQQ+MLY+AIWDMETLIEDLKS
Sbjct: 415 FLKSSAESNTKKVSLLEKQVRELEIQVQHSKASSEASQEQQNMLYAAIWDMETLIEDLKS 474

Query: 475 KVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNH 534
           KVSKAESKTE+VE+QCI+LSE N EL  + +F+R K++ LE+SL+RAN  KA SAKE+N 
Sbjct: 475 KVSKAESKTETVEDQCILLSETNMELDKELNFLRSKVEGLEASLDRANNSKATSAKEINL 534

Query: 535 RTKLMMEMVMQLATQRELIQKQVLILL 561
            T L+ + VMQL+ +R+ IQ Q+  L+
Sbjct: 535 TTTLIKDTVMQLSRERDYIQNQLFSLM 561

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297738216|emb|CBI27417.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359473487|ref|XP_002267767.2| PREDICTED: WPP domain-interacting tail-anchored protein 2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147817708|emb|CAN75587.1| hypothetical protein VITISV_040555 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224111830|ref|XP_002315993.1| predicted protein [Populus trichocarpa] gi|222865033|gb|EEF02164.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449463561|ref|XP_004149502.1| PREDICTED: WPP domain-interacting tail-anchored protein 2-like [Cucumis sativus] gi|449481214|ref|XP_004156116.1| PREDICTED: WPP domain-interacting tail-anchored protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356502676|ref|XP_003520143.1| PREDICTED: WPP domain-interacting tail-anchored protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|356498101|ref|XP_003517892.1| PREDICTED: WPP domain-interacting tail-anchored protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|12323223|gb|AAG51595.1|AC011665_16 unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|145327191|ref|NP_001077797.1| WPP domain-interacting tail-anchored protein 2 [Arabidopsis thaliana] gi|334183748|ref|NP_001185353.1| WPP domain-interacting tail-anchored protein 2 [Arabidopsis thaliana] gi|332196738|gb|AEE34859.1| WPP domain-interacting tail-anchored protein 2 [Arabidopsis thaliana] gi|332196739|gb|AEE34860.1| WPP domain-interacting tail-anchored protein 2 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query563
TAIR|locus:2205470627 WIT2 "AT1G68910" [Arabidopsis 0.895 0.803 0.527 1.9e-129
TAIR|locus:2148057 703 WIT1 "AT5G11390" [Arabidopsis 0.946 0.758 0.334 1.2e-60
DICTYBASE|DDB_G0290503 1492 DDB_G0290503 [Dictyostelium di 0.801 0.302 0.206 4.8e-17
UNIPROTKB|F1N8D3 848 Gga.11048 "Uncharacterized pro 0.747 0.496 0.234 1.2e-15
UNIPROTKB|F1NZF5 1940 Gga.27138 "Uncharacterized pro 0.792 0.229 0.246 7.7e-15
UNIPROTKB|P02565 1940 MYH3 "Myosin-3" [Gallus gallus 0.792 0.229 0.246 1.3e-14
UNIPROTKB|F1P3X4 1939 MYH8 "Uncharacterized protein" 0.792 0.230 0.242 1.6e-14
UNIPROTKB|F1P3W7 1928 Gga.27660 "Uncharacterized pro 0.722 0.211 0.237 4.4e-14
SGD|S000002216 1790 USO1 "Protein involved in the 0.765 0.240 0.222 5.2e-14
DICTYBASE|DDB_G0286985 1024 zipA "zipper-like domain-conta 0.795 0.437 0.212 5.4e-14
TAIR|locus:2205470 WIT2 "AT1G68910" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1270 (452.1 bits), Expect = 1.9e-129, P = 1.9e-129
 Identities = 277/525 (52%), Positives = 376/525 (71%)

Query:    43 MTVLTRVDLDLAYSSEKXXXXXXXXXXXXARGDDLETLVMENSDVAATSIEKALVYDLLF 102
             + +LT++++D AY+SEK            A  +DLE   M   D +  S EKAL +DLL 
Sbjct:    24 LRMLTKLEIDSAYTSEKLMNLHVLLMHLLAWDNDLEG--MGTLDSSPASFEKALTFDLLC 81

Query:   103 GILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQE 162
             GIL+SE++EV+ +LD +  +IV+  +KISSCKH   +      +E KL +   SLK+S+ 
Sbjct:    82 GILESEVKEVDEVLDVLEAQIVDTSYKISSCKHGNYIV-----IEGKLGESAESLKQSRG 136

Query:   163 HVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNAD-QQRHILRMLE 221
              VSE+ +Q A+ +R L Y  +G ++       N +   +  K  +K +D + ++ LRMLE
Sbjct:   137 QVSEITLQLAQLRRTLHYIRNGTSE-------NEESVELRQKYALKPSDLRHKNALRMLE 189

Query:   222 KSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMG 281
             KSL+REL+LEKK+ E  QNEEQLKLKLH+TE+V+ RMEEA+E +WGRFLEA+NS+EVL G
Sbjct:   190 KSLSRELELEKKLMEFQQNEEQLKLKLHYTEEVSSRMEEASEFIWGRFLEADNSSEVLTG 249

Query:   282 ISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST--KNSE---- 335
             ISKE++GR QI+QF+LNGS QRESELKSKL D   QL+AKD+++QKLE T  +NSE    
Sbjct:   250 ISKELVGRLQILQFSLNGSAQRESELKSKLEDCTVQLEAKDLLVQKLEGTISENSEIVSE 309

Query:   336 VLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESA 395
             VLT++E VKS E++LK +++ L++ NA  Q     L EM+N  ES+KE+L+ AESRAES 
Sbjct:   310 VLTLREYVKSAEQKLKNTDLELKSVNASKQEILVHLAEMENANESVKENLFEAESRAESG 369

Query:   396 EEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQ 455
             E K+ +L   NLEL+EE+NFLK  +D  TKKV  LE Q+R+LE+Q+Q +KVSSEA+QEQQ
Sbjct:   370 EAKIKELDAANLELTEELNFLKDADDKKTKKVNSLEKQVRELEVQVQNSKVSSEANQEQQ 429

Query:   456 SMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILE 515
             +MLYSAIWDMETLIEDLKSK SKAES+TE+VEEQCIVLS  N EL    SF+R K K LE
Sbjct:   430 NMLYSAIWDMETLIEDLKSKASKAESRTETVEEQCIVLSTTNSELNKDVSFLRQKAKSLE 489

Query:   516 SSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVLIL 560
             + L+ AN EK   A+E+  R K++M+M++QL+++RE IQ+Q+  L
Sbjct:   490 AMLDLANNEKERYAQEITTRNKVLMDMMLQLSSERERIQEQLYSL 534
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2148057 WIT1 "AT5G11390" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0290503 DDB_G0290503 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1N8D3 Gga.11048 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NZF5 Gga.27138 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P02565 MYH3 "Myosin-3" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P3X4 MYH8 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P3W7 Gga.27660 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
SGD|S000002216 USO1 "Protein involved in the ER to Golgi transport step of secretion" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0286985 zipA "zipper-like domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A8MQR0WIT2_ARATHNo assigned EC number0.54640.89160.8006yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query563
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-09
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-08
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-08
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-07
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 9e-07
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-06
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 1e-06
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-05
PLN02939 977 PLN02939, PLN02939, transferase, transferring glyc 6e-05
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 7e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-04
PRK02224 880 PRK02224, PRK02224, chromosome segregation protein 1e-04
COG5185622 COG5185, HEC1, Protein involved in chromosome segr 2e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-04
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 3e-04
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 7e-04
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.001
TIGR04211198 TIGR04211, SH3_and_anchor, SH3 domain protein 0.004
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information 
 Score = 60.5 bits (147), Expect = 1e-09
 Identities = 56/277 (20%), Positives = 136/277 (49%), Gaps = 14/277 (5%)

Query: 223 SLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGI 282
           SLA++ +L++   EL + E QL+      + +   +              E+  E L   
Sbjct: 662 SLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSL-----------EDLLEELRRQ 710

Query: 283 SKEMLGRFQIVQFNLNGSLQRESELKSKLGDF---IEQLKAKDMVLQKLESTKNSEVLTM 339
            +E+  + + ++  L    +   +L+S+L +    +E+L+ +   LQ+       E+ ++
Sbjct: 711 LEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESL 770

Query: 340 KEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKV 399
           +E +  L+E+++E E + Q      +  +E+L E +  +++L+  L   E R E  E+++
Sbjct: 771 EEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEI 830

Query: 400 TQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLY 459
            +L +   EL E+++ L+   +   K++  L+ +L +LE + ++ +   +  +E++  L 
Sbjct: 831 EELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELE 890

Query: 460 SAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSED 496
             + ++E+ + +LK ++ K   + E +E +   L  +
Sbjct: 891 EELRELESELAELKEEIEKLRERLEELEAKLERLEVE 927

Length = 1163
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 563
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 98.87
PRK02224 880 chromosome segregation protein; Provisional 98.67
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 98.57
PRK02224 880 chromosome segregation protein; Provisional 98.57
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 98.41
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 98.36
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 98.29
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 98.26
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 98.24
KOG01611930 consensus Myosin class II heavy chain [Cytoskeleto 98.22
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 98.15
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 98.14
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 98.11
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 97.98
PHA02562 562 46 endonuclease subunit; Provisional 97.85
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 97.71
KOG0971 1243 consensus Microtubule-associated protein dynactin 97.55
PF10174 775 Cast: RIM-binding protein of the cytomatrix active 97.44
PRK04778569 septation ring formation regulator EzrA; Provision 97.34
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 97.3
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 97.3
PRK04863 1486 mukB cell division protein MukB; Provisional 97.19
PRK03918 880 chromosome segregation protein; Provisional 97.15
PF01576859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 97.07
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 97.04
KOG0996 1293 consensus Structural maintenance of chromosome pro 97.04
PF10174 775 Cast: RIM-binding protein of the cytomatrix active 96.87
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 96.85
PF00038312 Filament: Intermediate filament protein; InterPro: 96.76
PLN02939 977 transferase, transferring glycosyl groups 96.63
PF00038312 Filament: Intermediate filament protein; InterPro: 96.6
PF01576 859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 96.59
KOG1003205 consensus Actin filament-coating protein tropomyos 96.58
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 96.44
KOG0933 1174 consensus Structural maintenance of chromosome pro 96.4
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 96.25
KOG0996 1293 consensus Structural maintenance of chromosome pro 96.23
PF05557 722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 96.17
KOG0933 1174 consensus Structural maintenance of chromosome pro 96.15
PRK03918 880 chromosome segregation protein; Provisional 96.11
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 96.01
PHA02562562 46 endonuclease subunit; Provisional 96.0
KOG1003205 consensus Actin filament-coating protein tropomyos 95.95
KOG0971 1243 consensus Microtubule-associated protein dynactin 95.93
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 95.86
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 95.64
PF06160560 EzrA: Septation ring formation regulator, EzrA ; I 95.56
PRK04863 1486 mukB cell division protein MukB; Provisional 95.56
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 95.55
COG5185622 HEC1 Protein involved in chromosome segregation, i 95.49
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 95.45
KOG0977 546 consensus Nuclear envelope protein lamin, intermed 95.34
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 95.31
PF14662193 CCDC155: Coiled-coil region of CCDC155 95.08
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 95.06
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 94.63
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 94.61
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 94.45
PF14915305 CCDC144C: CCDC144C protein coiled-coil region 94.37
PRK11637 428 AmiB activator; Provisional 94.16
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 93.74
PF14662193 CCDC155: Coiled-coil region of CCDC155 93.65
PF14915305 CCDC144C: CCDC144C protein coiled-coil region 93.52
PF05701522 WEMBL: Weak chloroplast movement under blue light; 93.5
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 93.28
PF09787511 Golgin_A5: Golgin subfamily A member 5; InterPro: 92.93
PF05701522 WEMBL: Weak chloroplast movement under blue light; 92.88
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 92.86
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 92.58
PRK09039343 hypothetical protein; Validated 92.38
PF05911769 DUF869: Plant protein of unknown function (DUF869) 92.27
PRK11281 1113 hypothetical protein; Provisional 91.95
PF05557 722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 91.95
PF05010207 TACC: Transforming acidic coiled-coil-containing p 91.9
KOG0018 1141 consensus Structural maintenance of chromosome pro 91.31
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 91.14
PRK01156 895 chromosome segregation protein; Provisional 90.88
TIGR02977219 phageshock_pspA phage shock protein A. Members of 90.73
PF15070 617 GOLGA2L5: Putative golgin subfamily A member 2-lik 90.26
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 89.86
PRK01156 895 chromosome segregation protein; Provisional 89.11
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 89.06
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 89.02
PRK11281 1113 hypothetical protein; Provisional 88.82
PRK10698222 phage shock protein PspA; Provisional 88.38
PF14073178 Cep57_CLD: Centrosome localisation domain of Cep57 87.97
PF15294278 Leu_zip: Leucine zipper 87.87
PF13851201 GAS: Growth-arrest specific micro-tubule binding 87.75
PF05483786 SCP-1: Synaptonemal complex protein 1 (SCP-1); Int 87.27
PRK04778 569 septation ring formation regulator EzrA; Provision 86.64
PRK10929 1109 putative mechanosensitive channel protein; Provisi 86.64
KOG0977 546 consensus Nuclear envelope protein lamin, intermed 86.43
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 85.48
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 85.19
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 84.15
KOG0963 629 consensus Transcription factor/CCAAT displacement 84.0
PRK09039343 hypothetical protein; Validated 83.99
PF13851201 GAS: Growth-arrest specific micro-tubule binding 83.98
KOG4438446 consensus Centromere-associated protein NUF2 [Cell 83.59
PF05622 713 HOOK: HOOK protein; InterPro: IPR008636 This famil 82.45
KOG0963 629 consensus Transcription factor/CCAAT displacement 82.33
KOG0804493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 81.85
TIGR03007498 pepcterm_ChnLen polysaccharide chain length determ 81.82
COG1842225 PspA Phage shock protein A (IM30), suppresses sigm 80.72
PF06008264 Laminin_I: Laminin Domain I; InterPro: IPR009254 L 80.08
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information 
Probab=98.87  E-value=4.8e-07  Score=88.90  Aligned_cols=231  Identities=26%  Similarity=0.314  Sum_probs=173.9

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccchhchhHHHHHHHhHHHHHhhhhHHHH
Q 008522          247 KLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQ  326 (563)
Q Consensus       247 kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Le  326 (563)
                      |+..+.++....++.+..+-..+=+++...+-.-+....|..|++.++-+|..+..|=.....||......+......+.
T Consensus         2 K~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k   81 (237)
T PF00261_consen    2 KIQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARK   81 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555566666666666666666667777777777788899999999999999888888999999999988888777777


Q ss_pred             HhhhcCchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhh
Q 008522          327 KLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTN  406 (563)
Q Consensus       327 kl~~s~~SE~~sL~eKv~sLEeQLkese~Ql~~akas~ea~~~~isdmEn~IedLK~kvskAESRAe~AEskc~lLteTN  406 (563)
                      .|+..    ..+--+|+..||.+|++.......+....+....++.-++       ..+.+||.|++.++++|..|-+. 
T Consensus        82 ~lE~r----~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E-------~~Le~aEeR~e~~E~ki~eLE~e-  149 (237)
T PF00261_consen   82 VLENR----EQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLE-------QELERAEERAEAAESKIKELEEE-  149 (237)
T ss_dssp             HHHHH----HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhchhHHHHHHH-
Confidence            77664    3466778888888888888887777777665555555444       44557777777777777655432 


Q ss_pred             HHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHHhhhhhhhhchhh
Q 008522          407 LELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESV  486 (563)
Q Consensus       407 ~EL~eEL~~Lks~~ss~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~ml~sti~DME~vIedLksKv~kaE~rae~~  486 (563)
                            |..              +...|+.++           ++.+   -.+....+++.-|.+|..++..+++||+.+
T Consensus       150 ------l~~--------------~~~~lk~lE-----------~~~~---~~~~re~~~e~~i~~L~~~lkeaE~Rae~a  195 (237)
T PF00261_consen  150 ------LKS--------------VGNNLKSLE-----------ASEE---KASEREDEYEEKIRDLEEKLKEAENRAEFA  195 (237)
T ss_dssp             ------HHH--------------HHHHHHHHH-----------HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------HHH--------------HHHHHHHhh-----------hhhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  222              222333322           2222   124457888999999999999999999999


Q ss_pred             hhhhcccccchhhhhhhhhhHHhHHHHHHHhHHHHHH
Q 008522          487 EEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANI  523 (563)
Q Consensus       487 E~kc~~LsEtN~eLneELsflrsk~~~LE~sL~~A~~  523 (563)
                      |.+|..|-..+-.|..+|...+.+..++..-|+.+..
T Consensus       196 E~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~  232 (237)
T PF00261_consen  196 ERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLN  232 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999987764

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PLN02939 transferase, transferring glycosyl groups Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton] Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PF14662 CCDC155: Coiled-coil region of CCDC155 Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PF14915 CCDC144C: CCDC144C protein coiled-coil region Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PF14662 CCDC155: Coiled-coil region of CCDC155 Back     alignment and domain information
>PF14915 CCDC144C: CCDC144C protein coiled-coil region Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants Back     alignment and domain information
>PRK11281 hypothetical protein; Provisional Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules Back     alignment and domain information
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR02977 phageshock_pspA phage shock protein A Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PRK11281 hypothetical protein; Provisional Back     alignment and domain information
>PRK10698 phage shock protein PspA; Provisional Back     alignment and domain information
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57 Back     alignment and domain information
>PF15294 Leu_zip: Leucine zipper Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>PRK10929 putative mechanosensitive channel protein; Provisional Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms Back     alignment and domain information
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily Back     alignment and domain information
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query563
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 6e-16
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-10
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 9e-08
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 4e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 4e-08
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
 Score = 80.7 bits (199), Expect = 6e-16
 Identities = 61/349 (17%), Positives = 134/349 (38%), Gaps = 25/349 (7%)

Query: 208  KNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWG 267
            +  ++ +     L+++  R+   E ++ EL Q   QL  + +  ++      E       
Sbjct: 854  RQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEE 913

Query: 268  RFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQK 327
              +      + L  I  EM  R +  +         + +++ ++ D  EQL+ ++   QK
Sbjct: 914  MRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQK 973

Query: 328  LESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYG 387
            L+  K +       K+K +E+ +   E              +Q N++    + L+E +  
Sbjct: 974  LQLEKVTA----DGKIKKMEDDILIME--------------DQNNKLTKERKLLEERVSD 1015

Query: 388  AESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVS 447
              +     EEK   LT    +    I+ L+       K    LE   R LE +       
Sbjct: 1016 LTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQ 1075

Query: 448  SEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFM 507
                Q Q       I +++  +   + ++  A ++ E    Q     +   EL++  S +
Sbjct: 1076 IAELQAQ-------IAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDL 1128

Query: 508  RDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQ 556
            ++ ++  +++ N+A  +K   ++E+      + + +   ATQ+EL    
Sbjct: 1129 QEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSD 1177
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query563
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 98.64
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 98.53
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 98.1
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 98.04
2efr_A155 General control protein GCN4 and tropomyosin 1 Al; 97.69
2efr_A155 General control protein GCN4 and tropomyosin 1 Al; 96.92
2b9c_A147 Striated-muscle alpha tropomyosin; alpha-helix, co 96.43
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 94.51
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 94.44
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 93.95
2b9c_A147 Striated-muscle alpha tropomyosin; alpha-helix, co 92.82
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 92.14
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 92.08
3u1c_A101 Tropomyosin alpha-1 chain; anti-parallel coiled co 89.38
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 89.2
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 86.83
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 86.58
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 86.25
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 86.25
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 85.47
3u1c_A101 Tropomyosin alpha-1 chain; anti-parallel coiled co 81.0
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 80.68
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
Probab=98.64  E-value=0.0001  Score=66.45  Aligned_cols=39  Identities=5%  Similarity=-0.009  Sum_probs=14.3

Q ss_pred             HHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhh
Q 008522          243 QLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMG  281 (563)
Q Consensus       243 eLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g  281 (563)
                      .+..++...+.....++.....+...+-++.....-+..
T Consensus        17 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~   55 (284)
T 1c1g_A           17 NALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATED   55 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333333333
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Back     alignment and structure
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Back     alignment and structure
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1 Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1 Back     alignment and structure
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00