Citrus Sinensis ID: 008535

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560--
Protein Sequence
MAMECLGGRLCSASANNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFEDIPVNSTGKVQKFVLRGKVNATAVGWSL
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHHHHHHHHccccEEEEEccEEEcHHHHHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHccccccHHcccccccHHHHHHHHHcccccEEEEccccHHHHHHHHHHcccccccccccEEEEEcccccccccccccccccccccccHHHHHcccccccccccccccccHHHcccccccccccccEEEccHHHHHHHHHHHHHcccccccEEEEcccccccccccHHHHHHHHcccEEccccccHHHHHHHHHHccccEEcccHHHHHHHHHHHHcccccccccEEEEEEccccHHHHHHHHHHcccEEEEEEccccccccccccccccccccccHHHHHHHHHccccccccccccEEEEEcccccccccccccEEEEEEEccHHcHHHcccccccHHHHcccccccccEEEEcccccEEEEcccccEEEcccccccHHHHHHHHHccccEEEEEEEEcccccccccEEEEEEEcccccccHHHHHHHHHccccccccccEEEEccccccccccccHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccHccccccccccccccccHHHHHHHHHHHcccccEEEEcccEEcHHHHHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHcccEEEEccccccHHHHHHHHHccccEEEEEcHHHHHHHHHHHHHccccEEEEcccccccccccccccccccccccccccccccHHHHHHcccccccccccccHccEEEEEEccccccccccEEEccHHHHHHHHHHHHHHccccccEEEEEEccHcHccHHHHHHHHHHcccEEEEccccHHHHHHHHHHccccccccHHHHHHHHHccccHcccccccHEEEEEccccccHHHHHHHHHcccEEEEEccccccccccEcccccHHHHcccHHHHHHHHccccccccccccccEEEEcccccccccccccEEEEEEEcccccccccccHHHHHHHHHcccEEEEEEEEEcccccEEEEEEHHHcEEEccEEEcHHHHHHHHcccccEEEEEEEEEEEcccEEEEEEEEEEcccccccHHHHHHHHHHHHHHcccccEEEEcccccccHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mameclggrlcsasannvpltpiDFLERAAhvygdatsIIYGTVRFSWRQTHQICLKLASALAQLKISRGdivaamapnipalYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALdilspnhkcdkapllvtipecdhyqpstcsvannfpsgsldyndllemgkadfemmqpnhecdpisvnytsgstgdpkgvvyshrgaylnslaqisrcdvrdmpVFLWTLdmfrcngwCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAivrqwkpegessaldheHEMTKHREGLNNLLIQGVdvkqqntmksvphdgktLGEVMFRANTVMLgyfknpkatEEAFRngwyhtgdlavrnpdgyvqmkdrRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVgkvddqlkEVPVAFVKlkegreaspeELVTFcgdelpscmvpraiffedipvnstgkVQKFVLRGKVNATAVGWSL
Flexible Loop (DISEMBL)
MAMECLGGRLCSASANNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSlaqisrcdVRDMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMksvphdgktlgEVMFRANTVMLGYFKNPKATEEAFRNgwyhtgdlavrnpdgyvQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVvgkvddqlKEVPVAFVklkegreaspeELVTFCGDELPSCMVPRAIFFEDIPVNSTGKVQKFVLRGKVNATAVGWSL
Low Complexity Region (SEG)
MAMECLGGRLCSASANNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFEDIPVNSTGKVQKFVLRGKVNATAVGWSL
Disordered region (IsUnstruct)
****CLGGRLCSASANNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADF**********PISVNYT******PKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQW**********************NNLLIQGVDV************GKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFEDIPVNSTGKVQKFVLRGKVNATAVGW**
Disordered Region (DISOPRED)
**********CSASANNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASAS***QLQRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFEDIPVNSTGKVQKFVLRGKVNATAVGWSL
Disordered Region (DISEMBL)
MAMECLGGRLCSASANNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFEDIPVNSTGKVQKFVLRGKVNATAVGWSL
Disordered Region (DISPRO)
*****LGGRLCSASANNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQ************GSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFEDIPVNSTGKVQKFVLRGKVNAT******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAMECLGGRLCSASANNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFEDIPVNSTGKVQKFVLRGKVNATAVGWSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	562	2.2.26 [Sep-21-2011]
F4HUK6	556	Probable acyl-activating	yes	no	0.951	0.962	0.531	1e-171
Q9SEY5	603	Probable acyl-activating	no	no	0.967	0.902	0.517	1e-163
Q9C8D4	572	Butyrate--CoA ligase AAE1	no	no	0.955	0.938	0.457	1e-140
Q9SFW5	546	Probable acyl-activating	no	no	0.927	0.954	0.468	1e-136
Q9SS01	580	Benzoate--CoA ligase, per	no	no	0.937	0.908	0.442	1e-131
Q9SS00	578	Probable acyl-activating	no	no	0.944	0.918	0.437	1e-128
Q9FFE9	550	Probable acyl-activating	no	no	0.935	0.956	0.435	1e-127
Q9FFE6	552	Probable acyl-activating	no	no	0.935	0.952	0.433	1e-127
Q8VZF1	569	Acetate/butyrate--CoA lig	no	no	0.944	0.933	0.421	1e-126
O80658	545	Probable acyl-activating	no	no	0.941	0.970	0.429	1e-126

>sp|F4HUK6|AAE1_ARATH Probable acyl-activating enzyme 1, peroxisomal OS=Arabidopsis thaliana GN=AAE1 PE=2 SV=1

 Score =  600 bits (1548), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 289/544 (53%), Positives = 389/544 (71%), Gaps = 9/544 (1%)

Query: 13  ASANNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDI 72
           + AN VPLTPI FL+R+A VY D  SI+YG+V+++WRQT   C+++ASAL+QL IS GD+
Sbjct: 9   SPANYVPLTPISFLDRSAVVYADRVSIVYGSVKYTWRQTRDRCVRIASALSQLGISTGDV 68

Query: 73  VAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQ 132
           V+ +APN+PA+ +LHF VPMAGA+L  LN R DS+ +A +LR    K+IF D+QF+++ +
Sbjct: 69  VSVLAPNVPAMVELHFGVPMAGALLCTLNIRHDSSLVAVLLRHSGTKVIFADHQFLQIAE 128

Query: 133 NALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSL-DYNDLLEMGKADFEMM 191
            A +ILS  +K DK P+LV IPE     P T SV+    S  + +Y D++ MGK+DFE++
Sbjct: 129 GACEILS--NKGDKVPILVLIPE-----PLTQSVSRKKRSEEMMEYEDVVAMGKSDFEVI 181

Query: 192 QPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCN 251
           +P  ECD ISVNYTSG+T  PKGVVYSHRGAYLNSLA +   ++   P +LWT  MF CN
Sbjct: 182 RPTDECDAISVNYTSGTTSSPKGVVYSHRGAYLNSLAAVLLNEMHSSPTYLWTNPMFHCN 241

Query: 252 GWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQ 311
           GWC  W + A+GG N+C+R V+AK IFD+I  HKVTH+ G P ILNMI NA  S+Q  L 
Sbjct: 242 GWCLLWGVTAIGGTNICLRNVTAKAIFDNISQHKVTHMGGAPTILNMIINAPESEQKPLP 301

Query: 312 RKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEM 371
            KV  +     P   V+ ++   GF++ H+YG+TE  GP  +  WKPE +S   + + +M
Sbjct: 302 GKVSFITGAAPPPAHVIFKMEELGFSMFHSYGLTETYGPGTICTWKPEWDSLPREEQAKM 361

Query: 372 TKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRN 431
            K R+G+N+L ++ + VK   TM+++P DG T+GEV+FR NTVM GY KNP+AT+EAF+ 
Sbjct: 362 -KARQGVNHLGLEEIQVKDPVTMRTLPADGVTMGEVVFRGNTVMNGYLKNPEATKEAFKG 420

Query: 432 GWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDD 491
           GW+ +GDL V++PDGY+++KDR KDIIISG E ISS+EVE+ L ++P VLEAAVV + D+
Sbjct: 421 GWFWSGDLGVKHPDGYIELKDRSKDIIISGGENISSIEVESTLFTHPCVLEAAVVARPDE 480

Query: 492 QLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFEDIPVNSTGKVQKFVLRG 551
              E   AFVKLK+G +AS EEL+++C D LP  M PR+I FED+P  STGKVQKFVLR 
Sbjct: 481 YWGETACAFVKLKDGSKASAEELISYCRDRLPHYMAPRSIVFEDLPKTSTGKVQKFVLRT 540

Query: 552 KVNA 555
           K  A
Sbjct: 541 KAKA 544

May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: -

>sp|Q9SEY5|AAE2_ARATH Probable acyl-activating enzyme 2 OS=Arabidopsis thaliana GN=AAE2 PE=2 SV=1

 Score =  576 bits (1485), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 284/549 (51%), Positives = 382/549 (69%), Gaps = 5/549 (0%)

Query: 10  LCSASANNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISR 69
           L  + AN  PL+PI FLER+A VY D TS+++G+V+ +W QT+Q CL+LASAL  L ISR
Sbjct: 51  LLRSPANFSPLSPITFLERSAKVYRDRTSLVFGSVKHTWFQTYQRCLRLASALTNLGISR 110

Query: 70  GDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVE 129
           GD+VAA+APN+PA+++LHFAVPMAG +L  LNTRLD +TL+ +L   EAKI+FVD+Q +E
Sbjct: 111 GDVVAALAPNVPAMHELHFAVPMAGLILCPLNTRLDPSTLSVLLAHSEAKILFVDHQLLE 170

Query: 130 VVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSG---SLDYNDLLEMGKA 186
           +   ALD+L+ + K  K+  LV I + +    S    ++ F S      +Y  LL+ G +
Sbjct: 171 IAHGALDLLAKSDKTRKSLKLVLISQSNDDDDSDEDSSSTFASKYSFDYEYETLLKSGDS 230

Query: 187 DFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLD 246
           +FE+++P  E DPIS+NYTSG+T  PKGVVYSHRGAYLNSLA +    +   PV+LWT+ 
Sbjct: 231 EFEIIKPRCEWDPISINYTSGTTSRPKGVVYSHRGAYLNSLATVFLHQMSVYPVYLWTVP 290

Query: 247 MFRCNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASD 306
           MF CNGWC  W +AA GG N+C+R VS K+IF +I +HKVTH+ G P +LNMI N + ++
Sbjct: 291 MFHCNGWCLVWGVAAQGGTNICLRKVSPKMIFKNIAMHKVTHMGGAPTVLNMIVNYTVTE 350

Query: 307 QNQLQRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALD 366
              L  +V I+  G  P  ++L ++   GFN+ H YG+TE  GP     WKPE +S +L+
Sbjct: 351 HKPLPHRVEIMTGGSPPLPQILAKMEELGFNVSHLYGLTETYGPGTHCVWKPEWDSLSLE 410

Query: 367 HEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATE 426
            E    K R+G+ +L ++G+DVK   TM++VP DG T+GEVMFR NTVM GYFK+ +AT 
Sbjct: 411 -ERTKLKARQGVQHLGLEGLDVKDPLTMETVPDDGLTMGEVMFRGNTVMSGYFKDIEATR 469

Query: 427 EAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVV 486
           +AF   W+H+GDLAV+ PDGY+++KDR KD+IISG E ISS+EVE VL S+  VLEAAVV
Sbjct: 470 KAFEGDWFHSGDLAVKYPDGYIEIKDRLKDVIISGGENISSVEVERVLCSHQAVLEAAVV 529

Query: 487 GKVDDQLKEVPVAFVKLKEGREA-SPEELVTFCGDELPSCMVPRAIFFEDIPVNSTGKVQ 545
            + D    + P  FVKLKEG +   PEE++ FC D LP  M P+ I F DIP  STGKVQ
Sbjct: 530 ARPDHHWGQTPCGFVKLKEGFDTIKPEEIIGFCRDHLPHYMAPKTIVFGDIPKTSTGKVQ 589

Query: 546 KFVLRGKVN 554
           K++LR K +
Sbjct: 590 KYLLRKKAD 598

May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q9C8D4|AAE11_ARATH Butyrate--CoA ligase AAE11, peroxisomal OS=Arabidopsis thaliana GN=AAE11 PE=1 SV=1

 Score =  500 bits (1287), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 255/557 (45%), Positives = 361/557 (64%), Gaps = 20/557 (3%)

Query: 10  LCSASANNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISR 69
           LC A  NNVPLTPI FL+RA+  Y + TSIIYG  RF+W QT+  C +LA++L  L I+R
Sbjct: 6   LCEA--NNVPLTPITFLKRASECYPNRTSIIYGQTRFTWPQTYDRCCRLAASLLSLNITR 63

Query: 70  GDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVE 129
            D+V+ +APN+PA+Y++HF+VPM GAVL+ +NTRLD+ T+A ILR  E KI+FVDY+F  
Sbjct: 64  NDVVSILAPNVPAMYEMHFSVPMTGAVLNPINTRLDAKTIAIILRHAEPKILFVDYEFAP 123

Query: 130 VVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGK---- 185
           ++Q  L ++ P ++    P ++ I E D       S    F S  LDY  L+  G+    
Sbjct: 124 LIQEVLRLI-PTYQSQPHPRIILINEID-------STTKPF-SKELDYEGLIRKGEPTPS 174

Query: 186 ADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTL 245
           +   M + ++E DPIS+NYTSG+T DPKGVV SH+GAYL++L+ I   ++   PV+LWTL
Sbjct: 175 SSASMFRVHNEHDPISLNYTSGTTADPKGVVISHQGAYLSALSSIIGWEMGIFPVYLWTL 234

Query: 246 DMFRCNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASAS 305
            MF CNGW  TW++AA GG NVCIR V+A  I+ +I +H VTH+   P +   +   S +
Sbjct: 235 PMFHCNGWTHTWSVAARGGTNVCIRHVTAPEIYKNIELHGVTHMSCVPTVFRFLLEGSRT 294

Query: 306 DQNQLQRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSAL 365
           DQ+     V ++  G  P   ++++V   GF++ H YG+TE  GP +  +W+ E  +   
Sbjct: 295 DQSPKSSPVQVLTGGSSPPAVLIKKVEQLGFHVMHGYGLTEATGPVLFCEWQDEW-NKLP 353

Query: 366 DHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKAT 425
           +H+    + R+G+ NL +  VDVK   T++SVP DGKT+GE++ + +++M GY KNPKAT
Sbjct: 354 EHQQIELQQRQGVRNLTLADVDVKNTKTLESVPRDGKTMGEIVIKGSSLMKGYLKNPKAT 413

Query: 426 EEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAV 485
            EAF++GW +TGD+ V +PDGYV++KDR KDIIISG E ISS+EVE VL    +VLEAAV
Sbjct: 414 SEAFKHGWLNTGDIGVIHPDGYVEIKDRSKDIIISGGENISSIEVEKVLYMYQEVLEAAV 473

Query: 486 VGKVDDQLKEVPVAFVKLKEGREA---SPEELVTFCGDELPSCMVP-RAIFFEDIPVNST 541
           V        E P AFV LK+G E    S  +L+ +C + +P  M P + +FF+++P NS 
Sbjct: 474 VAMPHPLWGETPCAFVVLKKGEEGLVTSEGDLIKYCRENMPHFMCPKKVVFFQELPKNSN 533

Query: 542 GKVQKFVLRGKVNATAV 558
           GK+ K  LR    A  V
Sbjct: 534 GKILKSKLRDIAKALVV 550

Butyrate--CoA ligase that is active in vitro with medium-chain fatty acids, with a preference for hexanoate and octanoate.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

>sp|Q9SFW5|AEE21_ARATH Probable acyl-activating enzyme 21 OS=Arabidopsis thaliana GN=AEE21 PE=3 SV=1

 Score =  484 bits (1247), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 253/540 (46%), Positives = 347/540 (64%), Gaps = 19/540 (3%)

Query: 14  SANNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIV 73
           SAN VPL+PI FLERAA V+G  TS++YG ++++W QT   C++LASAL+ L +SR D+V
Sbjct: 8   SANYVPLSPISFLERAAVVFGSRTSVVYGDIQYTWHQTRDRCVRLASALSDLGLSRHDVV 67

Query: 74  AAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQN 133
           AA+APN+PAL +L+F  PMAGAVL  LNT  DS  LA  L + + K+ FVD +F+ V + 
Sbjct: 68  AALAPNVPALCELYFGAPMAGAVLCVLNTTFDSQMLAMALEKTKPKVFFVDSEFLSVAEE 127

Query: 134 ALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQP 193
           +L +LS     ++ PL++TI E    Q           S    Y D L  G  +F+ ++P
Sbjct: 128 SLSLLS---NIEEKPLIITITENPTEQ-----------SKYEQYEDFLSTGNPNFKPIRP 173

Query: 194 NHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGW 253
             ECDPI++N+TSG+T  PK VVYSHRGAYLN+ A     +++ MPV+L T+ M+ C+GW
Sbjct: 174 VDECDPIALNFTSGTTSTPKCVVYSHRGAYLNATAVGVMNEMKPMPVYLCTVPMYHCSGW 233

Query: 254 CCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRK 313
           C  W + A GG+ VC+R V+ ++IFDSI+ HKVT+  G P +LNMIANA  S +      
Sbjct: 234 CYIWTVTAFGGVIVCLREVNDEVIFDSIVKHKVTNFGGSPPVLNMIANARDSVKKSFPWT 293

Query: 314 VIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTK 373
           V ++  G  P  EV+ ++   GF +  AYG +EV G      W PE E+   + E    K
Sbjct: 294 VQVMSGGSSPP-EVMLKLKKLGFKVMMAYGCSEVYGLGTACLWMPEWETLP-EEESLRLK 351

Query: 374 HREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGW 433
            R+GLN+   + VDV    TMKSVPHDGKT+  +  R NTVM GYFK+ +ATE AFR GW
Sbjct: 352 ARDGLNHFAKEAVDVLDPTTMKSVPHDGKTIRVIALRGNTVMSGYFKDKEATEAAFRGGW 411

Query: 434 YHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQL 493
           Y + D+ V +PDGY+Q KDR +D+I  G EI+ S E+E +L S+P V +A VVG+ D+ L
Sbjct: 412 YWSRDMGVIDPDGYIQFKDRSQDVITCGGEIVGSKEIEGILYSHPAVYDAGVVGRPDETL 471

Query: 494 KEVPVAFVKLKEGREASPEELVTFCGDELPS---CMVPRAIFFEDIPVNSTGKVQKFVLR 550
            E   AFVKLKEG EA  EE++ FC  +L +    M+P+ + F D+P   TGK++K VLR
Sbjct: 472 GESMCAFVKLKEGAEAREEEIIEFCKRKLGNKNMKMIPKTVVFSDVPKTPTGKIRKNVLR 531

May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q9SS01|AAE20_ARATH Benzoate--CoA ligase, peroxisomal OS=Arabidopsis thaliana GN=AAE20 PE=1 SV=1

 Score =  468 bits (1204), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 248/561 (44%), Positives = 347/561 (61%), Gaps = 34/561 (6%)

Query: 10  LCSASANNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISR 69
           L    ANNVPLTP+ FL+RA+  Y + TSIIYG  RF+W QT+  C +LA++L  L IS+
Sbjct: 4   LALCEANNVPLTPMTFLKRASECYPNRTSIIYGKTRFTWPQTYDRCCRLAASLISLNISK 63

Query: 70  GDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVE 129
            D+V+ MAPN PALY++HFAVPMAGAVL+ +NTRLD+ ++A+ILR  + KI+F+D  F  
Sbjct: 64  NDVVSVMAPNTPALYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILFLDRSFEA 123

Query: 130 VVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGS----LDYNDLLEMGK 185
           + + +L +LS        P++  I E            N+FP  +    LDY  L++ G+
Sbjct: 124 LARESLHLLSSEDSNLNLPVIF-IHE------------NDFPKRASFEELDYECLIQRGE 170

Query: 186 AD----FEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVF 241
                   M +   E DPIS+NYTSG+T DPKGVV SHRGAYL +L+ I   ++   PV+
Sbjct: 171 PTPSMVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLCTLSAIIGWEMGTCPVY 230

Query: 242 LWTLDMFRCNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIAN 301
           LWTL MF CNGW  TW  AA GG +VC+R V+A  I+ +I +H VTH+C  P + N++  
Sbjct: 231 LWTLPMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLK 290

Query: 302 ASASDQNQLQRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGE 361
            ++ D +     V ++  G  P   ++++V   GF + HAYG TE  GP +  +W+ E  
Sbjct: 291 GNSLDLSPRSGPVHVLTGGSPPPAALVKKVQRLGFQVMHAYGQTEATGPILFCEWQDEWN 350

Query: 362 SSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKN 421
               + + E+ K R+G++ L +  VDVK + T KS P DGKT+GE++ + +++M GY KN
Sbjct: 351 RLPENQQMEL-KARQGISILGLADVDVKNKETQKSAPRDGKTMGEILIKGSSIMKGYLKN 409

Query: 422 PKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVL 481
           PKAT EAF++GW +TGD+ V +PDG+V++KDR KDIIISG E ISS+EVE VL   PKVL
Sbjct: 410 PKATFEAFKHGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVL 469

Query: 482 EAAVVGKVDDQLKEVPVAFVKLKEGREASPEE-----------LVTFCGDELPSCMVPR- 529
           E AVV        E P AFV L++      E+           L+ +C + LP  M PR 
Sbjct: 470 ETAVVAMPHPTWGETPCAFVVLEKSETTIKEDRVDKFQTRERNLIEYCRENLPHFMCPRK 529

Query: 530 AIFFEDIPVNSTGKVQKFVLR 550
            +F E++P N  GK+ K  LR
Sbjct: 530 VVFLEELPKNGNGKILKPKLR 550

Benzoate--CoA ligase involved in benzoyloxyglucosinolate biosynthesis in seeds. Glucosinolates are secondary metabolites involved in pathogen and insect defense of cruciferous plants.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q9SS00|AAE12_ARATH Probable acyl-activating enzyme 12, peroxisomal OS=Arabidopsis thaliana GN=AAE12 PE=2 SV=1

 Score =  459 bits (1181), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 243/556 (43%), Positives = 346/556 (62%), Gaps = 25/556 (4%)

Query: 10  LCSASANNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISR 69
           L    ANNVPLTPI FL+RA+  Y + TSIIYG  RF+W QT+  C +LA++L  L I +
Sbjct: 4   LALCEANNVPLTPITFLKRASECYPNRTSIIYGKTRFTWPQTYDRCCRLAASLISLNIGK 63

Query: 70  GDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVE 129
            D+V+ +APN PA+Y++HFAVPMAGAVL+ +NTRLD+ ++A+ILR  + KI+F+   F  
Sbjct: 64  NDVVSVVAPNTPAMYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILFIYRSFEP 123

Query: 130 VVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKAD-- 187
           + +  L +LS        P++  I E D   P   S      S   DY  L++ G+    
Sbjct: 124 LAREILQLLSSEDSNLNLPVIF-IHEIDF--PKRVS------SEESDYECLIQRGEPTPL 174

Query: 188 --FEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTL 245
               M     E DPIS+NYTSG+T DPKGVV SHRGAYL++L+ I   ++   PV+LWTL
Sbjct: 175 LLARMFCIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTL 234

Query: 246 DMFRCNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASAS 305
            MF CNGW  TW  AA GG +VC+R V+A  I+ +I +H VTH+C  P + N++   ++ 
Sbjct: 235 PMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSL 294

Query: 306 DQNQLQRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSAL 365
           D +     V ++  G  P   ++++V   GF + HAYG+TE  GP +  +W+ E      
Sbjct: 295 DLSHRSGPVHVLTGGSPPPAALVKKVQRLGFQVMHAYGLTEATGPVLFCEWQDEWNRLPE 354

Query: 366 DHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKAT 425
           + + E+ K R+GL+ L +  VDV+ + T +SVP DGKT+GE++ + +++M GY KNPKAT
Sbjct: 355 NQQMEL-KARQGLSILGLTEVDVRNKETQESVPRDGKTMGEIVMKGSSIMKGYLKNPKAT 413

Query: 426 EEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAV 485
            EAF++GW ++GD+ V +PDG+V++KDR KDIIISG E ISS+EVE ++   PKVLE AV
Sbjct: 414 YEAFKHGWLNSGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENIIYKYPKVLETAV 473

Query: 486 VGKVDDQLKEVPVAFVKLKEG------RE----ASPEELVTFCGDELPSCMVPR-AIFFE 534
           V        E P AFV L++G      RE        +L+ +C + LP  M PR  +F +
Sbjct: 474 VAMPHPTWGETPCAFVVLEKGETNNEDREDKLVTKERDLIEYCRENLPHFMCPRKVVFLD 533

Query: 535 DIPVNSTGKVQKFVLR 550
           ++P N  GK+ K  LR
Sbjct: 534 ELPKNGNGKILKPKLR 549

May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q9FFE9|AAE6_ARATH Probable acyl-activating enzyme 6 OS=Arabidopsis thaliana GN=AAE6 PE=2 SV=1

 Score =  456 bits (1174), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 236/542 (43%), Positives = 347/542 (64%), Gaps = 16/542 (2%)

Query: 14  SANNVPLTPIDFLERAAHVYGDATSIIYGT-VRFSWRQTHQICLKLASALAQLKISRGDI 72
           +AN+ PLTPI FLERAA VYGD TSI+YG+   ++WR+T+  CL++AS+L+ + I R D+
Sbjct: 8   AANSPPLTPIGFLERAATVYGDCTSIVYGSNTVYTWRETNLRCLRVASSLSSIGIGRSDV 67

Query: 73  VAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQ 132
           V+ ++PN PA+Y+L FAVPM+GA+L+ +NTRLD+ T++ +LR  E+K++FVD   V++  
Sbjct: 68  VSVLSPNTPAMYELQFAVPMSGAILNNINTRLDARTVSVLLRHCESKLLFVDVFSVDLAV 127

Query: 133 NALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQ 192
            A+ +++ +      P+LV I   D  +    +   +    S  Y+DL+E G   F+ ++
Sbjct: 128 EAVSMMTTD-----PPILVVI--ADKEEEGGVADVADLSKFSYTYDDLIERGDPGFKWIR 180

Query: 193 PNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNG 252
           P  E DP+ +NYTSG+T  PKGVV+ HRG ++ S+  +    V   PV+LWTL +F  NG
Sbjct: 181 PESEWDPVVLNYTSGTTSAPKGVVHCHRGIFVMSVDSLIDWAVPKNPVYLWTLPIFHSNG 240

Query: 253 WCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQ-LQ 311
           W   W +AAVGG NVC+R   A +I+  I  H VTH+CG P +LNM+   SA+ ++Q L 
Sbjct: 241 WTNPWGIAAVGGTNVCLRKFDAPLIYRLIRDHGVTHMCGAPVVLNML---SATQESQPLN 297

Query: 312 RKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEM 371
             V I+ AG  P   VL +  + GF I H YG+TE  G  +   WKP+           +
Sbjct: 298 HPVNILTAGSPPPATVLLRAESIGFVISHGYGLTETAGVIVSCAWKPKWNHLPASDRARL 357

Query: 372 TKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRN 431
            K R+G+  +    +DV    +  SV  +G+T+GE++ R ++VMLGY K+P  TE+A +N
Sbjct: 358 -KARQGVRTVGFTEIDVVDPESGLSVERNGETVGEIVMRGSSVMLGYLKDPVGTEKALKN 416

Query: 432 GWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDD 491
           GW++TGD+ V + DGY+++KDR KDIII+G E +SS+EVE VL + P V E AVV + D+
Sbjct: 417 GWFYTGDVGVIHSDGYLEIKDRSKDIIITGGENVSSVEVETVLYTIPAVNEVAVVARPDE 476

Query: 492 QLKEVPVAFVKLKEGREASP--EELVTFCGDELPSCMVPRAI-FFEDIPVNSTGKVQKFV 548
              E P AFV LK G    P  EEL+ +C  ++P  MVP+ + F +++P +STGKV KFV
Sbjct: 477 FWGETPCAFVSLKNGFSGKPTEEELMEYCRKKMPKYMVPKTVSFMDELPKSSTGKVTKFV 536

Query: 549 LR 550
           LR
Sbjct: 537 LR 538

May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q9FFE6|AAE5_ARATH Probable acyl-activating enzyme 5, peroxisomal OS=Arabidopsis thaliana GN=AAE5 PE=2 SV=1

 Score =  455 bits (1171), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 235/542 (43%), Positives = 348/542 (64%), Gaps = 16/542 (2%)

Query: 14  SANNVPLTPIDFLERAAHVYGDATSIIYGT-VRFSWRQTHQICLKLASALAQLKISRGDI 72
           +AN+ PLTPI FLERAA VYGD TSI+YG+   ++WR+T+  CL++AS+L+ + I R D+
Sbjct: 8   AANSPPLTPIGFLERAATVYGDCTSIVYGSNTVYTWRETNLRCLRVASSLSSIGIGRSDV 67

Query: 73  VAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQ 132
           V+ ++PN PA+Y+L FAVPM+GA+L+ +NTRLD+ T++ +LR   +K++FVD   V++  
Sbjct: 68  VSVLSPNTPAMYELQFAVPMSGAILNNINTRLDARTVSVLLRHCGSKLLFVDVFSVDLAV 127

Query: 133 NALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQ 192
            A+ +++ +      P+LV I + +  +     VA+     S  Y+DL+  G  DF+ ++
Sbjct: 128 EAISMMTTD-----PPILVFIADKEE-EGGDADVADR-TKFSYTYDDLIHRGDLDFKWIR 180

Query: 193 PNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNG 252
           P  E DP+ +NYTSG+T  PKGVV+ HRG ++ S+  +    V   PV+LWTL +F  NG
Sbjct: 181 PESEWDPVVLNYTSGTTSAPKGVVHCHRGIFVMSIDSLIDWTVPKNPVYLWTLPIFHANG 240

Query: 253 WCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQ-LQ 311
           W   W +AAVGG NVC+R   A +I+  I  H VTH+CG P +LNM+   SA+++ Q L 
Sbjct: 241 WSYPWGIAAVGGTNVCLRKFDAPLIYRLIRDHGVTHMCGAPVVLNML---SATNEFQPLN 297

Query: 312 RKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEM 371
           R V I+ AG  P   VL +  + GF I H YG+TE  G  +   WKP+           +
Sbjct: 298 RPVNILTAGAPPPAAVLLRAESIGFVISHGYGLTETAGLNVSCAWKPQWNRLPASDRARL 357

Query: 372 TKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRN 431
            K R+G+  +    +DV    + +SV  +G+T+GE++ R +++MLGY K+P  TE+A +N
Sbjct: 358 -KARQGVRTVGFTEIDVVDPESGRSVERNGETVGEIVMRGSSIMLGYLKDPVGTEKALKN 416

Query: 432 GWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDD 491
           GW++TGD+ V + DGY+++KDR KDIII+G E +SS+EVE VL +NP V E AVV + D 
Sbjct: 417 GWFYTGDVGVIHSDGYLEIKDRSKDIIITGGENVSSVEVETVLYTNPAVNEVAVVARPDV 476

Query: 492 QLKEVPVAFVKLKEGREASPE--ELVTFCGDELPSCMVPRAI-FFEDIPVNSTGKVQKFV 548
              E P AFV LK G    P   E++ +C  ++P  MVP+ + F +++P  STGKV KFV
Sbjct: 477 FWGETPCAFVSLKSGLTQRPTEVEMIEYCRKKMPKYMVPKTVSFVDELPKTSTGKVMKFV 536

Query: 549 LR 550
           LR
Sbjct: 537 LR 538

May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q8VZF1|AEE7_ARATH Acetate/butyrate--CoA ligase AAE7, peroxisomal OS=Arabidopsis thaliana GN=AAE7 PE=1 SV=1

 Score =  453 bits (1166), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 231/548 (42%), Positives = 339/548 (61%), Gaps = 17/548 (3%)

Query: 15  ANNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVA 74
           AN   LTP+ FL+RAA V+    S+I+G+  ++WRQT+  C +LASALA   I  G  VA
Sbjct: 17  ANYTALTPLWFLDRAAVVHPTRKSVIHGSREYTWRQTYDRCRRLASALADRSIGPGSTVA 76

Query: 75  AMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNA 134
            +APNIPA+Y+ HF VPM GAVL+ +N RL++ T+A +L   ++ +I VD +F  + +++
Sbjct: 77  IIAPNIPAMYEAHFGVPMCGAVLNCVNIRLNAPTVAFLLSHSQSSVIMVDQEFFTLAEDS 136

Query: 135 LDILSPNHKCD-KAPLLVTIPECDHYQPSTC---SVANNFPSGSLDYNDLLEMGKADFEM 190
           L ++        K PLL+ I   DH    TC   S+      G+++Y D L  G  ++  
Sbjct: 137 LRLMEEKAGSSFKRPLLIVI--GDH----TCAPESLNRALSKGAIEYEDFLATGDPNYPW 190

Query: 191 MQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRC 250
             P  E   I++ YTSG+T  PKGVV  HRGAY+ +L+      ++D  V+LWTL MF C
Sbjct: 191 QPPADEWQSIALGYTSGTTASPKGVVLHHRGAYIMALSNPLIWGMQDGAVYLWTLPMFHC 250

Query: 251 NGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQN-Q 309
           NGWC  W++A + G ++C+R V+AK ++  I  +KVTH C  P +LN I NA   D    
Sbjct: 251 NGWCFPWSLAVLSGTSICLRQVTAKEVYSMIAKYKVTHFCAAPVVLNAIVNAPKEDTILP 310

Query: 310 LQRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEH 369
           L   V ++ AG  P   VL  +   GF + H YG++E  GP+ V  WKPE +S   + + 
Sbjct: 311 LPHTVHVMTAGAAPPPSVLFSMNQKGFRVAHTYGLSETYGPSTVCAWKPEWDSLPPETQA 370

Query: 370 EMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAF 429
           ++   R+G+    ++ +DV    T K VP DGKT GE++FR N VM GY KNP+A +E F
Sbjct: 371 KLNA-RQGVRYTGMEQLDVIDTQTGKPVPADGKTAGEIVFRGNMVMKGYLKNPEANKETF 429

Query: 430 RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKV 489
             GW+H+GD+AV++PD Y+++KDR KD+IISG E ISS+EVE V+  +P VLEA+VV + 
Sbjct: 430 AGGWFHSGDIAVKHPDNYIEIKDRSKDVIISGGENISSVEVENVVYHHPAVLEASVVARP 489

Query: 490 DDQLKEVPVAFVKLKEGREAS-----PEELVTFCGDELPSCMVPRAIFFEDIPVNSTGKV 544
           D++ +E P AFV LK   E        ++++ FC ++LP+  VP+++ F  +P  +TGK+
Sbjct: 490 DERWQESPCAFVTLKSDYEKHDQNKLAQDIMKFCREKLPAYWVPKSVVFGPLPKTATGKI 549

Query: 545 QKFVLRGK 552
           QK +LR K
Sbjct: 550 QKHILRTK 557

Peroxisomal acetate/butyrate--CoA ligase that is probably involved in the activation of exogenous acetate for entry into the glyoxylate cycle. May play a role to prevent carbon loss from peroxisomes during lipid mobilization. In vitro, is active with both acetate and butyrate.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

>sp|O80658|AAE4_ARATH Probable acyl-activating enzyme 4 OS=Arabidopsis thaliana GN=AEE4 PE=2 SV=1

 Score =  451 bits (1161), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 235/547 (42%), Positives = 341/547 (62%), Gaps = 18/547 (3%)

Query: 10  LCSASANNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASAL--AQLKI 67
           L   ++N+ PLT + FLERAA V+GD+ S+++ T   +W +TH  CL++AS L  A L I
Sbjct: 4   LLPHASNSCPLTVLGFLERAASVFGDSPSLLHTTTVHTWSETHSRCLRIASTLSSASLGI 63

Query: 68  SRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQF 127
           +RG +V+ + PN+P++Y+L FAVPM+GAVL+ +N RLD+  L+ +LR  E+K++FVD+  
Sbjct: 64  NRGQVVSVIGPNVPSVYELQFAVPMSGAVLNNINPRLDAHALSVLLRHSESKLVFVDHHS 123

Query: 128 VEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLD-YNDLLEMGKA 186
             +V  A+  L      D+ P LV + + +   PS+ S   +F    LD Y   +E G  
Sbjct: 124 SSLVLEAVSFLPK----DERPRLVILNDGND-MPSSSSADMDF----LDTYEGFMERGDL 174

Query: 187 DFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLD 246
            F+ ++P  E  P+ +NYTSG+T  PKGVV+SHR  +++++  +    + + PV+LWTL 
Sbjct: 175 RFKWVRPKSEWTPMVLNYTSGTTSSPKGVVHSHRSVFMSTINSLLDWSLPNRPVYLWTLP 234

Query: 247 MFRCNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASD 306
           MF  NGW  TWA AAVG  N+C+  V    IF+ I  ++VTH+C  P +LNM+ N  A  
Sbjct: 235 MFHANGWSYTWATAAVGARNICVTRVDVPTIFNLIDKYQVTHMCAAPMVLNMLTNHPA-- 292

Query: 307 QNQLQRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALD 366
           Q  LQ  V ++ AG  P   V+ +    GF++ H YGMTE  G  +    KPE +    D
Sbjct: 293 QKPLQSPVKVMTAGAPPPATVISKAEALGFDVSHGYGMTETGGLVVSCALKPEWDRLEPD 352

Query: 367 HEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATE 426
            E    K R+G+   +   VDV+   + KSV HDG T+GE++FR  +VMLGY+K+P+ T 
Sbjct: 353 -ERAKQKSRQGIRTAVFAEVDVRDPISGKSVKHDGATVGEIVFRGGSVMLGYYKDPEGTA 411

Query: 427 EAFR-NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAV 485
            + R +GW++TGD+ V +PDGY+++KDR KD++I G E ISS E+EAVL +NP + EAAV
Sbjct: 412 ASMREDGWFYTGDIGVMHPDGYLEVKDRSKDVVICGGENISSTELEAVLYTNPAIKEAAV 471

Query: 486 VGKVDDQLKEVPVAFVKLK-EGREASPEELVTFCGDELPSCMVPR-AIFFEDIPVNSTGK 543
           V K D    E P AFV LK      +  E+  FC  +LP  MVPR  +F E++P  STGK
Sbjct: 472 VAKPDKMWGETPCAFVSLKYHDGSVTEREIREFCKTKLPKYMVPRNVVFLEELPKTSTGK 531

Query: 544 VQKFVLR 550
           +QKF+LR
Sbjct: 532 IQKFLLR 538

May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	562
224084135	551	predicted protein [Populus trichocarpa]	0.950	0.969	0.643	0.0
224151318	511	predicted protein [Populus trichocarpa]	0.845	0.929	0.661	0.0
255539206	551	AMP dependent ligase, putative [Ricinus	0.950	0.969	0.573	1e-179
356540860	541	PREDICTED: putative acyl-CoA synthetase	0.943	0.979	0.582	1e-178
225457528	566	PREDICTED: putative acyl-CoA synthetase	0.953	0.946	0.549	1e-175
359494714	482	PREDICTED: medium-chain-fatty-acid--CoA	0.848	0.989	0.620	1e-174
224086034	552	predicted protein [Populus trichocarpa]	0.953	0.971	0.551	1e-172
297850474	555	adenosine monophosphate binding protein	0.951	0.963	0.532	1e-170
18394877	556	acyl activating enzyme 1 [Arabidopsis th	0.951	0.962	0.531	1e-169
255561377	544	AMP dependent ligase, putative [Ricinus	0.957	0.988	0.535	1e-169

>gi|224084135|ref|XP_002307223.1| predicted protein [Populus trichocarpa] gi|222856672|gb|EEE94219.1| predicted protein [Populus trichocarpa]

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/544 (64%), Positives = 418/544 (76%), Gaps = 10/544 (1%)

Query: 15  ANNVPLTPIDFLERAAHVYGDATSIIYGT-VRFSWRQTHQICLKLASALAQLKISRGDIV 73
           AN VPL+PI FLERAA VYGD  SI+YG+ VRFSW+ T   C+K+ASAL QLKI  GDIV
Sbjct: 10  ANYVPLSPISFLERAATVYGDKVSIVYGSNVRFSWKDTFDRCVKVASALVQLKICPGDIV 69

Query: 74  AAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQN 133
            A APN+PALY+LHF VPMAGAV+SALNTRLD++TLA  L QLEAK+IFVDYQF +VV  
Sbjct: 70  VAFAPNVPALYELHFGVPMAGAVISALNTRLDASTLALALEQLEAKLIFVDYQFTDVVLK 129

Query: 134 ALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQP 193
           ALD+LS   K    P LV IPECD     + S+     +  LDYN LLEMG+ DF +++P
Sbjct: 130 ALDLLS--QKKVNPPHLVVIPECD----KSSSMDRKHIASDLDYNCLLEMGRDDFRIIRP 183

Query: 194 NHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGW 253
           N+ECDPISVNYTSGSTG PKGVVYSHR AYLNSLA+I R D+R MPVFLWT+DMFRCNGW
Sbjct: 184 NNECDPISVNYTSGSTGKPKGVVYSHRAAYLNSLAEIFRFDMRQMPVFLWTVDMFRCNGW 243

Query: 254 CCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANA--SASDQNQLQ 311
           C TWAMAA+GG N+C+R VSA IIFD++ +HKVTH CG P ILN IANA   AS Q+   
Sbjct: 244 CLTWAMAALGGTNICLRNVSADIIFDAVSLHKVTHFCGPPAILNTIANAPARASSQSPFP 303

Query: 312 RKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEM 371
             V +V+AG LP  E+L +V   GFN+ H YGMTE LGPA +R WKPE +S+  + E E 
Sbjct: 304 CSVNVVVAGSLPNSEILTKVEGLGFNVYHGYGMTEALGPATIRPWKPESDST-FEIEQEE 362

Query: 372 TKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRN 431
            + REGL+NLL++GVDVK   TM+SVP+DGKT+GEVMFR N +M GY K+ + T+E  + 
Sbjct: 363 IRRREGLHNLLLEGVDVKDPKTMESVPNDGKTIGEVMFRGNILMSGYLKSTEITQETLKG 422

Query: 432 GWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDD 491
           GW+HTGDL VR+P+GY+QMKDR KDIIISG E IS+LEVEAVLLS+PKV EAAVVG+ D 
Sbjct: 423 GWFHTGDLGVRHPNGYLQMKDRAKDIIISGGEAISTLEVEAVLLSHPKVSEAAVVGQPDA 482

Query: 492 QLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFEDIPVNSTGKVQKFVLRG 551
            L EVP AFVKLKEG  AS EE++ FCGD+LP  M+PR I F ++PVN +GKVQKF +R 
Sbjct: 483 LLNEVPCAFVKLKEGFGASAEEIIEFCGDQLPDLMIPRTIVFGELPVNFSGKVQKFAMRE 542

Query: 552 KVNA 555
            VNA
Sbjct: 543 TVNA 546

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224151318|ref|XP_002337088.1| predicted protein [Populus trichocarpa] gi|222837992|gb|EEE76357.1| predicted protein [Populus trichocarpa]

 Score =  646 bits (1666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/481 (66%), Positives = 375/481 (77%), Gaps = 6/481 (1%)

Query: 73  VAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQ 132
           V A+APN+PALY+LHF VPMAGAVLSALNTRLD++TLA  L QL AK+IFVDYQF +V  
Sbjct: 28  VVALAPNVPALYELHFGVPMAGAVLSALNTRLDASTLALTLEQLNAKLIFVDYQFNDVAL 87

Query: 133 NALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQ 192
            ALD+LS   K  K P LV IPECD    ST S+     S  LDYN LLEMG+ DF +++
Sbjct: 88  KALDLLS--LKSVKPPHLVGIPECDK---STSSMDCKNISCDLDYNGLLEMGRDDFTIIR 142

Query: 193 PNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNG 252
           PN ECDPISVNYTSGSTG PKGV+YSHR AYLNSLA+I R D+R MPVFLWT+DMFRCNG
Sbjct: 143 PNKECDPISVNYTSGSTGKPKGVIYSHRAAYLNSLAEIFRFDMRQMPVFLWTVDMFRCNG 202

Query: 253 WCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQR 312
           WC TWAMAA+G  N+C+R VSA++IFDSI +HKVTH CG P ILN IANA A +QN L  
Sbjct: 203 WCLTWAMAALGATNICLRNVSAEVIFDSISLHKVTHFCGPPAILNTIANAPAGNQNPLPF 262

Query: 313 KVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMT 372
            V ++IAG  P  E+L +V   GFN+ H YGMTE LGPAIVR WKPE +S+  ++E E  
Sbjct: 263 NVNVIIAGPFPYSEILTKVEGLGFNVYHGYGMTEALGPAIVRPWKPELDST-FENEQEKI 321

Query: 373 KHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNG 432
           ++REGL+NLLI+GVDVK  NTMKSVP DGKT+GEVMFR+N +M GY KN + T+EAFR G
Sbjct: 322 RNREGLHNLLIEGVDVKDPNTMKSVPRDGKTIGEVMFRSNILMSGYLKNSEVTQEAFRGG 381

Query: 433 WYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQ 492
           WYHTGDL VR+ +GY+QMKDR KDIIISG E IS+LEVEAVLLS+PKV EAAVVG+ D  
Sbjct: 382 WYHTGDLGVRHQNGYIQMKDRGKDIIISGGEAISTLEVEAVLLSHPKVSEAAVVGQPDAI 441

Query: 493 LKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFEDIPVNSTGKVQKFVLRGK 552
           L EVP AFVK+KEG  AS EE+  FCG+ LP  M+P++I F D+PVN +GKVQKF +R K
Sbjct: 442 LNEVPCAFVKVKEGFGASAEEITNFCGNRLPDHMIPKSIVFGDLPVNFSGKVQKFAIREK 501

Query: 553 V 553
           V
Sbjct: 502 V 502

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539206|ref|XP_002510668.1| AMP dependent ligase, putative [Ricinus communis] gi|223551369|gb|EEF52855.1| AMP dependent ligase, putative [Ricinus communis]

 Score =  635 bits (1639), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 312/544 (57%), Positives = 393/544 (72%), Gaps = 10/544 (1%)

Query: 14  SANNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIV 73
           SAN VPL+PI FLER+A  Y D+ SI+YG V+++WR+THQ C+KLASAL  L I+RGD+V
Sbjct: 8   SANYVPLSPISFLERSAIAYRDSISIVYGDVKYTWRETHQRCIKLASALVHLGINRGDVV 67

Query: 74  AAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQN 133
           AA+APNIPALY+LHF VPMAGAVL  LN R DSA ++ +LR  EAK+IFVD+QF+++ Q 
Sbjct: 68  AALAPNIPALYELHFGVPMAGAVLCTLNVRHDSAMVSVLLRHSEAKVIFVDHQFLQIAQG 127

Query: 134 ALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQP 193
           AL+ILS      K P+ V + EC   QP+  S      SG L++  LL MGK DFE+ +P
Sbjct: 128 ALEILS--KLGTKLPMFVLVQECG--QPTPIS-----SSGHLEFESLLAMGKLDFEVRRP 178

Query: 194 NHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGW 253
           N ECDPIS+NYTSG+T  PKGV+YSHRGAYLNSLA +   D+  MP++LW + MF CNGW
Sbjct: 179 NDECDPISLNYTSGTTSSPKGVIYSHRGAYLNSLAAVLLNDMVSMPIYLWCVPMFHCNGW 238

Query: 254 CCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRK 313
           C TW +AA GG +VC+R+VS K IF++I  +KVTH+ G P +LNMI NA ASDQ  L  K
Sbjct: 239 CLTWGVAAQGGTHVCLRSVSPKGIFENIARYKVTHMGGAPTVLNMIINAPASDQKPLPGK 298

Query: 314 VIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTK 373
           V ++     P   VL  +   GFN+ H+YG+TE  GP  V  WKPE  S   D + ++ K
Sbjct: 299 VAVMTGAAPPPPRVLFAMEELGFNVTHSYGLTETYGPGTVCTWKPEWTSLPRDVQAKI-K 357

Query: 374 HREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGW 433
            R+GL +L I+ VD+K   TMKSVP D KT+GEVMFR NTVM GY KN +ATEEAF+ GW
Sbjct: 358 ARQGLQHLGIEEVDIKDPVTMKSVPPDAKTIGEVMFRGNTVMNGYLKNLRATEEAFKGGW 417

Query: 434 YHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQL 493
           + +GDL V++PDGY+++KDR KDIIISG E IS++EVE+VL S+P VLEAAVVG  DD  
Sbjct: 418 FRSGDLGVKHPDGYIELKDRSKDIIISGGENISTIEVESVLFSHPAVLEAAVVGSPDDHW 477

Query: 494 KEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFEDIPVNSTGKVQKFVLRGKV 553
            E P AFVKLK+G  AS +EL+ +C D LP  M PR + FED+P  STGKVQK+VLR K 
Sbjct: 478 GETPCAFVKLKDGCNASAQELIKYCRDHLPHYMAPRTVLFEDLPKTSTGKVQKYVLRKKA 537

Query: 554 NATA 557
           +AT 
Sbjct: 538 SATG 541

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540860|ref|XP_003538902.1| PREDICTED: putative acyl-CoA synthetase YngI-like [Glycine max]

 Score =  630 bits (1624), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 318/546 (58%), Positives = 397/546 (72%), Gaps = 16/546 (2%)

Query: 14  SANNVPLTPIDFLERAAHVYGDATSIIYG-TVRFSWRQTHQICLKLASALAQLKISRGDI 72
           S + VPL+PI FLE AA  YGD  SIIY   VRFSWRQTH+ C+KLASAL  L IS  D+
Sbjct: 2   SEDLVPLSPISFLEGAATNYGDKISIIYHHNVRFSWRQTHERCVKLASALVNLGISHNDM 61

Query: 73  VAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLE-AKIIFVDYQFVEVV 131
           V A+APNIPALY+LHF VPMAG VLSALNT+LD  TLA +L QLE  KI+FVDYQ ++  
Sbjct: 62  VTALAPNIPALYELHFGVPMAGGVLSALNTQLDVTTLALLLEQLEPCKIMFVDYQLIDSA 121

Query: 132 QNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMM 191
             A +ILS  H+  K P++V IP  D  Q     +A N P G+L+YN+L+ +GK DFE +
Sbjct: 122 LKACEILS--HRKCKPPIIVLIPNYDQEQ---SFLAKNIPPGTLNYNELIAIGKKDFEAL 176

Query: 192 QPNHECDPISVNYTSGSTGD-PKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRC 250
           +PN+EC+PISVNYTSGSTG  PKGVVYSHR AYLNSLA I+R +++ +PVFLWT+DMFRC
Sbjct: 177 KPNNECNPISVNYTSGSTGILPKGVVYSHRSAYLNSLAAIARFEMKQLPVFLWTVDMFRC 236

Query: 251 NGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQL 310
           NGWC  WAM+A+GG N+C+R VSAK I+D+I ++KVT  CG P +L+MIANAS SDQ  L
Sbjct: 237 NGWCFPWAMSAIGGTNICLRNVSAKGIYDAIYLYKVTQFCGAPTLLDMIANASPSDQRPL 296

Query: 311 QRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHE 370
             +V + +AGVLP   VL +V+  GF++   YGMTE LGP IVR W P       D EH 
Sbjct: 297 PHRVNVTVAGVLPPFHVLNKVSQLGFDVNIGYGMTETLGPVIVRPWNPNS-----DGEH- 350

Query: 371 MTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFR 430
            TK   G++    Q VDVK   T +S PHDGKT+GE+MF+ N +MLGY KN +A ++AFR
Sbjct: 351 -TKLNYGVSEFR-QDVDVKDPETGESTPHDGKTIGEIMFKGNALMLGYLKNSQANDKAFR 408

Query: 431 NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVD 490
            GWY TGDLAVR P+G + MKDR KD+I S  E++SSLEVEAVLL++PKVL+AAVVG+ D
Sbjct: 409 GGWYRTGDLAVREPNGSITMKDRAKDVIYSKGEVVSSLEVEAVLLNHPKVLKAAVVGRCD 468

Query: 491 DQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFEDIPVNSTGKVQKFVLR 550
           + L E   A VKLK+G  A+ EE++ FC D L + MVP  + F D+PVNSTGKVQKF +R
Sbjct: 469 ECLVESLCAIVKLKDGCSATVEEIIKFCEDHLATHMVPSTVVFGDLPVNSTGKVQKFRIR 528

Query: 551 GKVNAT 556
            K+  +
Sbjct: 529 EKIKGS 534

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457528|ref|XP_002270022.1| PREDICTED: putative acyl-CoA synthetase YngI-like [Vitis vinifera]

 Score =  620 bits (1599), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 299/544 (54%), Positives = 391/544 (71%), Gaps = 8/544 (1%)

Query: 14  SANNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIV 73
           SAN+VPL+PI FLER+A VY D  +I+YG V+F+WR T + C +LASA+  L ISRGD+V
Sbjct: 17  SANHVPLSPISFLERSASVYRDRVAIVYGRVKFTWRDTLERCTRLASAITHLGISRGDVV 76

Query: 74  AAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQN 133
           AA+APNIPA+Y+LHF VPMAGAVL  LN R DSA ++++L+  EAK+IFVDYQ ++  Q 
Sbjct: 77  AALAPNIPAMYELHFGVPMAGAVLCTLNIRHDSAMVSTLLKHSEAKMIFVDYQLLDTAQG 136

Query: 134 ALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPS--GSLDYNDLLEMGKADFEMM 191
           AL+ILS      K P LV IPECD  QP+   ++N+ P+  G L+Y  L+ MGK DF++ 
Sbjct: 137 ALEILSKTRT--KLPRLVLIPECDKLQPT---ISNSGPTVAGDLEYETLIAMGKTDFDIR 191

Query: 192 QPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCN 251
            PN E DPI++NYTSG+T  PKGV+YSHRGA+LNSLA +   ++  MPV+LWT+ MF CN
Sbjct: 192 WPNDEWDPIALNYTSGTTSRPKGVIYSHRGAHLNSLAAVLLNEMGSMPVYLWTVPMFHCN 251

Query: 252 GWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQ 311
           GWC TW +AA GG NVC+R V+AK IFDSI  H+VTH+ G P +LNMI NA   DQ  L 
Sbjct: 252 GWCLTWGVAAQGGTNVCLRNVTAKGIFDSISQHRVTHMGGAPTVLNMIINAPVGDQRPLP 311

Query: 312 RKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEM 371
            KV ++  G  P  +VL  +   GF + H+YG+TE  GP  V  WKPE +    D + ++
Sbjct: 312 GKVAVMTGGAPPPPQVLFNMKELGFGVFHSYGLTETYGPGTVCTWKPEWDLLPPDKQAKI 371

Query: 372 TKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRN 431
              R+GL++L ++ VD+K   TMKSVP D KT+GEVMFR NTVM GY K+ KATEE+F+ 
Sbjct: 372 NA-RQGLHHLGMEEVDIKDPVTMKSVPPDAKTIGEVMFRGNTVMNGYLKDIKATEESFKG 430

Query: 432 GWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDD 491
           GW+ +GDL V++PDGY+++KDR KDIIISG E IS++EVEAVL S+P +LEAAVVG+ DD
Sbjct: 431 GWFRSGDLGVKHPDGYIELKDRSKDIIISGGENISTIEVEAVLFSHPAILEAAVVGRPDD 490

Query: 492 QLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFEDIPVNSTGKVQKFVLRG 551
              E P AFVKLKEG  A+  E++ FC ++LP  M P+ + F D+P  STGK QK++L+ 
Sbjct: 491 HWGETPCAFVKLKEGCNANANEIIKFCRNKLPHYMAPKTVVFYDLPKTSTGKTQKYILKE 550

Query: 552 KVNA 555
           K  A
Sbjct: 551 KAKA 554

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494714|ref|XP_002268559.2| PREDICTED: medium-chain-fatty-acid--CoA ligase-like, partial [Vitis vinifera]

 Score =  617 bits (1590), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 303/488 (62%), Positives = 372/488 (76%), Gaps = 11/488 (2%)

Query: 73  VAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQ 132
           VAA+APNIPALY+LHF VPMAGA+LSALN RLDS  LA IL+QLEAKIIFVDYQF++V  
Sbjct: 1   VAALAPNIPALYELHFGVPMAGAILSALNPRLDSTMLALILQQLEAKIIFVDYQFLQVFL 60

Query: 133 NALDILSPNHKCDKAPLLVTIPECDHYQPST-CSVANNFPSGSLDYNDLLEMGKADFEMM 191
            ALDILS      K P+LV I EC H  P+T  S     P+G+LDY+ LL MG+ DFE++
Sbjct: 61  QALDILSEAKI--KPPILVLILECCH--PATFSSTIEKIPAGNLDYDGLLAMGQPDFEII 116

Query: 192 QPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCN 251
           +P++EC PISVNYTSGSTG+PKGVVYSHR AYLNSLA I R D++ MPVFLWT+DMFRCN
Sbjct: 117 RPSNECTPISVNYTSGSTGNPKGVVYSHRAAYLNSLAVIFRSDLKQMPVFLWTVDMFRCN 176

Query: 252 GWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQ 311
           GWC  W +AA+ G N+C+R VSAK+I+ +I +H VTH CG P +LN+IA+A+ +DQ  L 
Sbjct: 177 GWCFPWTVAALCGTNICLRKVSAKVIYGAIFLHNVTHFCGAPSLLNLIADAAVTDQRPLP 236

Query: 312 RKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEM 371
            KV IVIAG LP  +VL +V   GFN+ H+YGMTE LGP   R W PE  S    ++H  
Sbjct: 237 HKVDIVIAGALPPPQVLMKVVELGFNVTHSYGMTEALGPVTARLWHPEPNS----YQHAK 292

Query: 372 TKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRN 431
            K  +GL+NL+++GVDVK  +TMKSVP D KT+GEVMFR NT+M+GY KN KAT+EAFR 
Sbjct: 293 IKCCQGLHNLIMEGVDVKDPSTMKSVPRDRKTIGEVMFRGNTMMMGYHKNLKATQEAFRG 352

Query: 432 GWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDD 491
           GWY TGDLAV +PDGY+QMKDR KD+IISG + IS++E+EAVL+ +P V+E AVVG+ DD
Sbjct: 353 GWYRTGDLAVMHPDGYIQMKDRSKDVIISGVKTISTIEIEAVLVGHPMVMEVAVVGRPDD 412

Query: 492 QLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFEDIPVNSTGKVQKFVLRG 551
            L E P AF+KLKEG   S +E+  FC + LP+ MVP+ I F D+PVNSTGK+QKFVLR 
Sbjct: 413 CLGETPCAFLKLKEGCATSADEITNFCAERLPTYMVPQTIIFGDLPVNSTGKIQKFVLRE 472

Query: 552 KVNATAVG 559
           K  A AVG
Sbjct: 473 K--AKAVG 478

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224086034|ref|XP_002307787.1| predicted protein [Populus trichocarpa] gi|222857236|gb|EEE94783.1| predicted protein [Populus trichocarpa]

 Score =  612 bits (1577), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 301/546 (55%), Positives = 389/546 (71%), Gaps = 10/546 (1%)

Query: 10  LCSASANNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISR 69
           +   SAN VPLTPI FLER+A VY D  S+ YG ++++W++TH+ C++LASALA L IS 
Sbjct: 4   MVKCSANYVPLTPISFLERSAIVYRDRVSVAYGDIKYTWKETHERCVRLASALAHLGISP 63

Query: 70  GDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVE 129
           GD+VAA+APNIPA+Y+LHF VPMAGAVL  LN R DS+ ++ +L+  EAK+IFVDYQ + 
Sbjct: 64  GDVVAALAPNIPAMYELHFGVPMAGAVLCTLNVRHDSSMVSVLLKHSEAKLIFVDYQCLP 123

Query: 130 VVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFE 189
           + Q AL+ILS   +  K PLLV IPEC   QP+  S         L+Y  LLE GK DFE
Sbjct: 124 IAQGALEILS--ERKTKLPLLVLIPECG--QPAAISSPR-----ILEYESLLEKGKLDFE 174

Query: 190 MMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFR 249
           + +P  E DPIS+NYTSG+T  PKGV+YSHRGAYLNSLA     D+  MPV+LW + MF 
Sbjct: 175 VRRPRDEWDPISLNYTSGTTSSPKGVIYSHRGAYLNSLAAALLNDMSAMPVYLWCVPMFH 234

Query: 250 CNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQ 309
           CNGWC TWA+AA GG NVC R V+A+ IF++I  HKVTH+ G P +LNMI NASAS++  
Sbjct: 235 CNGWCLTWAVAAQGGTNVCQRYVTARDIFENIAQHKVTHMSGAPTVLNMIINASASEKRP 294

Query: 310 LQRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEH 369
           L  KV ++  G  P   VL ++   GF++ H+YG+TE  GP  V  WKPE  S   + + 
Sbjct: 295 LPGKVAVMTGGAPPPSHVLFKMEELGFHVTHSYGLTETYGPGTVCAWKPEWASLTPEAQA 354

Query: 370 EMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAF 429
           ++ K R+G+ +L ++ +D+K   TMKSVP D KT+GEVMFR NTVM GY KN +AT++AF
Sbjct: 355 KI-KSRQGVQHLGLEELDIKDPVTMKSVPADAKTMGEVMFRGNTVMNGYLKNLEATKDAF 413

Query: 430 RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKV 489
             GW+ +GDL V++PDGY+++KDR KDIIISG E ISS+EVE+ L S+P VLEAA+VG+ 
Sbjct: 414 SGGWFRSGDLGVKHPDGYIELKDRSKDIIISGGENISSIEVESALFSHPAVLEAAIVGRP 473

Query: 490 DDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFEDIPVNSTGKVQKFVL 549
           DD   E P AFVKLKEG  A+ EEL+ FC D LP  M PR + F+++P  STGKVQK+VL
Sbjct: 474 DDYWGETPCAFVKLKEGCNANAEELIKFCRDHLPHYMTPRTVVFQELPKTSTGKVQKYVL 533

Query: 550 RGKVNA 555
           + K  A
Sbjct: 534 KEKAKA 539

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297850474|ref|XP_002893118.1| adenosine monophosphate binding protein 1 AMPBP1 [Arabidopsis lyrata subsp. lyrata] gi|297338960|gb|EFH69377.1| adenosine monophosphate binding protein 1 AMPBP1 [Arabidopsis lyrata subsp. lyrata]

 Score =  604 bits (1558), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 290/545 (53%), Positives = 388/545 (71%), Gaps = 10/545 (1%)

Query: 13  ASANNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDI 72
           + AN VPLTPI FL+R+A VY D  S++YG+V+++WRQT   C+++ASAL+QL IS GD+
Sbjct: 7   SPANYVPLTPISFLDRSAVVYADRVSVVYGSVKYTWRQTRDRCVRIASALSQLGISTGDV 66

Query: 73  VAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQ 132
           V+ +APNIPA+ +LHF VPMAGA+L  LN R DSA +A +LR    K+IF D+QF+++ Q
Sbjct: 67  VSVLAPNIPAMVELHFGVPMAGALLCTLNIRHDSALVAVLLRHSGTKVIFADHQFLQIAQ 126

Query: 133 NALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGS--LDYNDLLEMGKADFEM 190
            A +ILS   K DK P+LV +PE     P T SV+    S    ++Y D++ MGK+DFE+
Sbjct: 127 GACEILS--KKGDKVPILVLVPE-----PLTQSVSGKKRSEEDIMEYEDVVAMGKSDFEV 179

Query: 191 MQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRC 250
           ++P  ECDPISVNYTSG+T  PKGVVYSHRGAYLNSLA +   ++   P +LWT  MF C
Sbjct: 180 IRPTDECDPISVNYTSGTTSSPKGVVYSHRGAYLNSLAAVLLNEMHSSPTYLWTNPMFHC 239

Query: 251 NGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQL 310
           NGWC  W + A+GG N+C+R V+AK IFD++  HKVTH+ G P ILNMI NA  S+Q  L
Sbjct: 240 NGWCLLWGVTAIGGTNICLRNVTAKAIFDNVSQHKVTHMGGAPTILNMIINAPESEQKSL 299

Query: 311 QRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHE 370
             KV  +     P   V+ ++   GF++ H+YG+TE  GP  +  WKPE +S   + + +
Sbjct: 300 PGKVSFITGAAPPPAHVIYKMEELGFSMFHSYGLTETYGPGTICTWKPEWDSLPREEQAK 359

Query: 371 MTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFR 430
           M K R+G+N++ I+ + VK   TM+++P DG T+GEV+FR NTVM GY KNP+AT+EAF+
Sbjct: 360 M-KARQGVNHIGIEEIQVKDPVTMRTLPADGVTMGEVVFRGNTVMNGYLKNPEATKEAFK 418

Query: 431 NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVD 490
            GW+ +GDL V++PDGY+++KDR KDIIISG E ISS+EVE+ L ++P VLEAAVV + D
Sbjct: 419 GGWFWSGDLGVKHPDGYIELKDRSKDIIISGGENISSIEVESTLFTHPCVLEAAVVARPD 478

Query: 491 DQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFEDIPVNSTGKVQKFVLR 550
           +   E   AFVKLK+G  AS EEL+++C D LP  M PR+I FED+P  STGKVQKFVLR
Sbjct: 479 EYWGETACAFVKLKDGSMASAEELISYCRDRLPHYMAPRSIVFEDLPKTSTGKVQKFVLR 538

Query: 551 GKVNA 555
            K  A
Sbjct: 539 TKAKA 543

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18394877|ref|NP_564116.1| acyl activating enzyme 1 [Arabidopsis thaliana] gi|378548264|sp|F4HUK6.1|AAE1_ARATH RecName: Full=Probable acyl-activating enzyme 1, peroxisomal; AltName: Full=AMP-binding protein 1; Short=AtAMPBP1 gi|332191865|gb|AEE29986.1| acyl activating enzyme 1 [Arabidopsis thaliana]

 Score =  600 bits (1548), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 289/544 (53%), Positives = 389/544 (71%), Gaps = 9/544 (1%)

Query: 13  ASANNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDI 72
           + AN VPLTPI FL+R+A VY D  SI+YG+V+++WRQT   C+++ASAL+QL IS GD+
Sbjct: 9   SPANYVPLTPISFLDRSAVVYADRVSIVYGSVKYTWRQTRDRCVRIASALSQLGISTGDV 68

Query: 73  VAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQ 132
           V+ +APN+PA+ +LHF VPMAGA+L  LN R DS+ +A +LR    K+IF D+QF+++ +
Sbjct: 69  VSVLAPNVPAMVELHFGVPMAGALLCTLNIRHDSSLVAVLLRHSGTKVIFADHQFLQIAE 128

Query: 133 NALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSL-DYNDLLEMGKADFEMM 191
            A +ILS  +K DK P+LV IPE     P T SV+    S  + +Y D++ MGK+DFE++
Sbjct: 129 GACEILS--NKGDKVPILVLIPE-----PLTQSVSRKKRSEEMMEYEDVVAMGKSDFEVI 181

Query: 192 QPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCN 251
           +P  ECD ISVNYTSG+T  PKGVVYSHRGAYLNSLA +   ++   P +LWT  MF CN
Sbjct: 182 RPTDECDAISVNYTSGTTSSPKGVVYSHRGAYLNSLAAVLLNEMHSSPTYLWTNPMFHCN 241

Query: 252 GWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQ 311
           GWC  W + A+GG N+C+R V+AK IFD+I  HKVTH+ G P ILNMI NA  S+Q  L 
Sbjct: 242 GWCLLWGVTAIGGTNICLRNVTAKAIFDNISQHKVTHMGGAPTILNMIINAPESEQKPLP 301

Query: 312 RKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEM 371
            KV  +     P   V+ ++   GF++ H+YG+TE  GP  +  WKPE +S   + + +M
Sbjct: 302 GKVSFITGAAPPPAHVIFKMEELGFSMFHSYGLTETYGPGTICTWKPEWDSLPREEQAKM 361

Query: 372 TKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRN 431
            K R+G+N+L ++ + VK   TM+++P DG T+GEV+FR NTVM GY KNP+AT+EAF+ 
Sbjct: 362 -KARQGVNHLGLEEIQVKDPVTMRTLPADGVTMGEVVFRGNTVMNGYLKNPEATKEAFKG 420

Query: 432 GWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDD 491
           GW+ +GDL V++PDGY+++KDR KDIIISG E ISS+EVE+ L ++P VLEAAVV + D+
Sbjct: 421 GWFWSGDLGVKHPDGYIELKDRSKDIIISGGENISSIEVESTLFTHPCVLEAAVVARPDE 480

Query: 492 QLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFEDIPVNSTGKVQKFVLRG 551
              E   AFVKLK+G +AS EEL+++C D LP  M PR+I FED+P  STGKVQKFVLR 
Sbjct: 481 YWGETACAFVKLKDGSKASAEELISYCRDRLPHYMAPRSIVFEDLPKTSTGKVQKFVLRT 540

Query: 552 KVNA 555
           K  A
Sbjct: 541 KAKA 544

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561377|ref|XP_002521699.1| AMP dependent ligase, putative [Ricinus communis] gi|223539090|gb|EEF40686.1| AMP dependent ligase, putative [Ricinus communis]

 Score =  600 bits (1547), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 293/547 (53%), Positives = 378/547 (69%), Gaps = 9/547 (1%)

Query: 10  LCSASANNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISR 69
           L   S N VPL+P  FLERAA VY D TS++YG V++SW  T+  C+KLASALAQL IS 
Sbjct: 4   LVCCSTNYVPLSPTSFLERAAKVYRDRTSVVYGDVKYSWSGTYDRCVKLASALAQLGISH 63

Query: 70  GDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVE 129
           GD+VA +APN+PA+Y+LHFAVPMAG VL  LNTR DS  ++ +L   EAKIIFVD+Q ++
Sbjct: 64  GDVVATLAPNVPAMYELHFAVPMAGGVLCTLNTRYDSNMVSILLDHSEAKIIFVDFQLLD 123

Query: 130 VVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFE 189
           V   AL++L+   +  K+P++V I E D   P+       F S + +Y  LL  G   FE
Sbjct: 124 VASKALELLANTER--KSPIVVLISESDGLSPT------GFTSNTYEYESLLANGNKGFE 175

Query: 190 MMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFR 249
           + +P +E DPISVNYTSG+T  PKGVVYSHRGAYLNSLA +    +  MPV+LWT+ MF 
Sbjct: 176 IRRPKNEWDPISVNYTSGTTSRPKGVVYSHRGAYLNSLATVFLHGIGAMPVYLWTVPMFH 235

Query: 250 CNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQ 309
           CNGWC TW +AA GG N+CIR V+ K IFDSI  H VTH+ G P +LNMI N+  SD+  
Sbjct: 236 CNGWCLTWGVAAQGGTNICIRKVTPKAIFDSIGQHNVTHMGGAPTVLNMIVNSPVSDRRT 295

Query: 310 LQRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEH 369
           L  KV I+  G  P  +++ ++   GF + H YG+TE  GP     WKPE +S   D E 
Sbjct: 296 LPHKVEIMTGGAPPPPQIIFKMEELGFGVSHLYGLTETYGPGTYCAWKPEWDSLPPD-ER 354

Query: 370 EMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAF 429
              K R+G+++L ++ VDV+   T +SVP DGKT+GE++FR NTVM GY K+ KATEEAF
Sbjct: 355 AKLKARQGIHHLGLEDVDVRDPMTQESVPADGKTIGEIVFRGNTVMSGYLKDLKATEEAF 414

Query: 430 RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKV 489
           + GW+ +GDLAV++PDGY+++KDR KDIIISG E IS++EVE VL S+P + EAAVV + 
Sbjct: 415 QGGWFRSGDLAVKHPDGYIEVKDRLKDIIISGGENISTVEVETVLYSHPAIFEAAVVARP 474

Query: 490 DDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFEDIPVNSTGKVQKFVL 549
           DD   + P AFVKLKEG   S ++++ FC D LP  M PR + FED+P  STGKVQKF+L
Sbjct: 475 DDHWGQTPCAFVKLKEGFVVSEQDIIKFCRDRLPHYMAPRTVIFEDLPRTSTGKVQKFIL 534

Query: 550 RGKVNAT 556
           R K  AT
Sbjct: 535 RQKAKAT 541

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	562
TAIR|locus:2030407	556	AAE1 "acyl activating enzyme 1	0.948	0.958	0.533	7.2e-155
TAIR|locus:2057249	603	AT2G17650 [Arabidopsis thalian	0.966	0.900	0.518	3e-149
TAIR|locus:2013860	572	AAE11 "acyl-activating enzyme	0.955	0.938	0.457	1.5e-129
TAIR|locus:2014599	546	AT1G76290 [Arabidopsis thalian	0.927	0.954	0.468	1.8e-126
TIGR_CMR|SPO_0677	542	SPO_0677 "AMP-binding protein"	0.935	0.970	0.445	2.4e-122
UNIPROTKB|Q47WB3	541	CPS_4259 "AMP-binding protein"	0.934	0.970	0.437	7.4e-121
TIGR_CMR|CPS_4259	541	CPS_4259 "AMP-binding protein"	0.934	0.970	0.437	7.4e-121
TAIR|locus:2009774	580	BZO1 "benzoyloxyglucosinolate	0.941	0.912	0.450	5.2e-120
TAIR|locus:2009714	578	AAE12 "acyl activating enzyme	0.941	0.915	0.440	3.3e-118
TAIR|locus:2171357	550	AT5G16340 [Arabidopsis thalian	0.935	0.956	0.437	1.8e-117

TAIR|locus:2030407 AAE1 "acyl activating enzyme 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1510 (536.6 bits), Expect = 7.2e-155, P = 7.2e-155
 Identities = 289/542 (53%), Positives = 388/542 (71%)

Query:    15 ANNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVA 74
             AN VPLTPI FL+R+A VY D  SI+YG+V+++WRQT   C+++ASAL+QL IS GD+V+
Sbjct:    11 ANYVPLTPISFLDRSAVVYADRVSIVYGSVKYTWRQTRDRCVRIASALSQLGISTGDVVS 70

Query:    75 AMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNA 134
              +APN+PA+ +LHF VPMAGA+L  LN R DS+ +A +LR    K+IF D+QF+++ + A
Sbjct:    71 VLAPNVPAMVELHFGVPMAGALLCTLNIRHDSSLVAVLLRHSGTKVIFADHQFLQIAEGA 130

Query:   135 LDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSL-DYNDLLEMGKADFEMMQP 193
              +ILS  +K DK P+LV IPE     P T SV+    S  + +Y D++ MGK+DFE+++P
Sbjct:   131 CEILS--NKGDKVPILVLIPE-----PLTQSVSRKKRSEEMMEYEDVVAMGKSDFEVIRP 183

Query:   194 NHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGW 253
               ECD ISVNYTSG+T  PKGVVYSHRGAYLNSLA +   ++   P +LWT  MF CNGW
Sbjct:   184 TDECDAISVNYTSGTTSSPKGVVYSHRGAYLNSLAAVLLNEMHSSPTYLWTNPMFHCNGW 243

Query:   254 CCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRK 313
             C  W + A+GG N+C+R V+AK IFD+I  HKVTH+ G P ILNMI NA  S+Q  L  K
Sbjct:   244 CLLWGVTAIGGTNICLRNVTAKAIFDNISQHKVTHMGGAPTILNMIINAPESEQKPLPGK 303

Query:   314 VIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTK 373
             V  +     P   V+ ++   GF++ H+YG+TE  GP  +  WKPE +S   + + +M K
Sbjct:   304 VSFITGAAPPPAHVIFKMEELGFSMFHSYGLTETYGPGTICTWKPEWDSLPREEQAKM-K 362

Query:   374 HREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGW 433
              R+G+N+L ++ + VK   TM+++P DG T+GEV+FR NTVM GY KNP+AT+EAF+ GW
Sbjct:   363 ARQGVNHLGLEEIQVKDPVTMRTLPADGVTMGEVVFRGNTVMNGYLKNPEATKEAFKGGW 422

Query:   434 YHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQL 493
             + +GDL V++PDGY+++KDR KDIIISG E ISS+EVE+ L ++P VLEAAVV + D+  
Sbjct:   423 FWSGDLGVKHPDGYIELKDRSKDIIISGGENISSIEVESTLFTHPCVLEAAVVARPDEYW 482

Query:   494 KEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFEDIPVNSTGKVQKFVLRGKV 553
              E   AFVKLK+G +AS EEL+++C D LP  M PR+I FED+P  STGKVQKFVLR K 
Sbjct:   483 GETACAFVKLKDGSKASAEELISYCRDRLPHYMAPRSIVFEDLPKTSTGKVQKFVLRTKA 542

Query:   554 NA 555
              A
Sbjct:   543 KA 544

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016208 "AMP binding" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2057249 AT2G17650 [Arabidopsis thaliana (taxid:3702)]

 Score = 1457 (517.9 bits), Expect = 3.0e-149, P = 3.0e-149
 Identities = 285/550 (51%), Positives = 385/550 (70%)

Query:    10 LCSASANNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISR 69
             L  + AN  PL+PI FLER+A VY D TS+++G+V+ +W QT+Q CL+LASAL  L ISR
Sbjct:    51 LLRSPANFSPLSPITFLERSAKVYRDRTSLVFGSVKHTWFQTYQRCLRLASALTNLGISR 110

Query:    70 GDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVE 129
             GD+VAA+APN+PA+++LHFAVPMAG +L  LNTRLD +TL+ +L   EAKI+FVD+Q +E
Sbjct:   111 GDVVAALAPNVPAMHELHFAVPMAGLILCPLNTRLDPSTLSVLLAHSEAKILFVDHQLLE 170

Query:   130 VVQNALDILSPNHKCDKAPLLVTIPEC----DHYQPSTCSVANNFPSGSLDYNDLLEMGK 185
             +   ALD+L+ + K  K+  LV I +     D  + S+ + A+ + S   +Y  LL+ G 
Sbjct:   171 IAHGALDLLAKSDKTRKSLKLVLISQSNDDDDSDEDSSSTFASKY-SFDYEYETLLKSGD 229

Query:   186 ADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTL 245
             ++FE+++P  E DPIS+NYTSG+T  PKGVVYSHRGAYLNSLA +    +   PV+LWT+
Sbjct:   230 SEFEIIKPRCEWDPISINYTSGTTSRPKGVVYSHRGAYLNSLATVFLHQMSVYPVYLWTV 289

Query:   246 DMFRCNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASAS 305
              MF CNGWC  W +AA GG N+C+R VS K+IF +I +HKVTH+ G P +LNMI N + +
Sbjct:   290 PMFHCNGWCLVWGVAAQGGTNICLRKVSPKMIFKNIAMHKVTHMGGAPTVLNMIVNYTVT 349

Query:   306 DQNQLQRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSAL 365
             +   L  +V I+  G  P  ++L ++   GFN+ H YG+TE  GP     WKPE +S +L
Sbjct:   350 EHKPLPHRVEIMTGGSPPLPQILAKMEELGFNVSHLYGLTETYGPGTHCVWKPEWDSLSL 409

Query:   366 DHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKAT 425
             + E    K R+G+ +L ++G+DVK   TM++VP DG T+GEVMFR NTVM GYFK+ +AT
Sbjct:   410 E-ERTKLKARQGVQHLGLEGLDVKDPLTMETVPDDGLTMGEVMFRGNTVMSGYFKDIEAT 468

Query:   426 EEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAV 485
              +AF   W+H+GDLAV+ PDGY+++KDR KD+IISG E ISS+EVE VL S+  VLEAAV
Sbjct:   469 RKAFEGDWFHSGDLAVKYPDGYIEIKDRLKDVIISGGENISSVEVERVLCSHQAVLEAAV 528

Query:   486 VGKVDDQLKEVPVAFVKLKEGREA-SPEELVTFCGDELPSCMVPRAIFFEDIPVNSTGKV 544
             V + D    + P  FVKLKEG +   PEE++ FC D LP  M P+ I F DIP  STGKV
Sbjct:   529 VARPDHHWGQTPCGFVKLKEGFDTIKPEEIIGFCRDHLPHYMAPKTIVFGDIPKTSTGKV 588

Query:   545 QKFVLRGKVN 554
             QK++LR K +
Sbjct:   589 QKYLLRKKAD 598

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

TAIR|locus:2013860 AAE11 "acyl-activating enzyme 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 1271 (452.5 bits), Expect = 1.5e-129, P = 1.5e-129
 Identities = 255/557 (45%), Positives = 360/557 (64%)

Query:    10 LCSASANNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISR 69
             LC A  NNVPLTPI FL+RA+  Y + TSIIYG  RF+W QT+  C +LA++L  L I+R
Sbjct:     6 LCEA--NNVPLTPITFLKRASECYPNRTSIIYGQTRFTWPQTYDRCCRLAASLLSLNITR 63

Query:    70 GDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVE 129
              D+V+ +APN+PA+Y++HF+VPM GAVL+ +NTRLD+ T+A ILR  E KI+FVDY+F  
Sbjct:    64 NDVVSILAPNVPAMYEMHFSVPMTGAVLNPINTRLDAKTIAIILRHAEPKILFVDYEFAP 123

Query:   130 VVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGK---- 185
             ++Q  L ++ P ++    P ++ I E D       S    F S  LDY  L+  G+    
Sbjct:   124 LIQEVLRLI-PTYQSQPHPRIILINEID-------STTKPF-SKELDYEGLIRKGEPTPS 174

Query:   186 ADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTL 245
             +   M + ++E DPIS+NYTSG+T DPKGVV SH+GAYL++L+ I   ++   PV+LWTL
Sbjct:   175 SSASMFRVHNEHDPISLNYTSGTTADPKGVVISHQGAYLSALSSIIGWEMGIFPVYLWTL 234

Query:   246 DMFRCNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASAS 305
              MF CNGW  TW++AA GG NVCIR V+A  I+ +I +H VTH+   P +   +   S +
Sbjct:   235 PMFHCNGWTHTWSVAARGGTNVCIRHVTAPEIYKNIELHGVTHMSCVPTVFRFLLEGSRT 294

Query:   306 DQNQLQRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSAL 365
             DQ+     V ++  G  P   ++++V   GF++ H YG+TE  GP +  +W+ E      
Sbjct:   295 DQSPKSSPVQVLTGGSSPPAVLIKKVEQLGFHVMHGYGLTEATGPVLFCEWQDEWNKLP- 353

Query:   366 DHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKAT 425
             +H+    + R+G+ NL +  VDVK   T++SVP DGKT+GE++ + +++M GY KNPKAT
Sbjct:   354 EHQQIELQQRQGVRNLTLADVDVKNTKTLESVPRDGKTMGEIVIKGSSLMKGYLKNPKAT 413

Query:   426 EEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAV 485
              EAF++GW +TGD+ V +PDGYV++KDR KDIIISG E ISS+EVE VL    +VLEAAV
Sbjct:   414 SEAFKHGWLNTGDIGVIHPDGYVEIKDRSKDIIISGGENISSIEVEKVLYMYQEVLEAAV 473

Query:   486 VGKVDDQLKEVPVAFVKLKEGREA---SPEELVTFCGDELPSCMVPR-AIFFEDIPVNST 541
             V        E P AFV LK+G E    S  +L+ +C + +P  M P+  +FF+++P NS 
Sbjct:   474 VAMPHPLWGETPCAFVVLKKGEEGLVTSEGDLIKYCRENMPHFMCPKKVVFFQELPKNSN 533

Query:   542 GKVQKFVLRGKVNATAV 558
             GK+ K  LR    A  V
Sbjct:   534 GKILKSKLRDIAKALVV 550

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0019605 "butyrate metabolic process" evidence=IDA

GO:0047760 "butyrate-CoA ligase activity" evidence=IDA

TAIR|locus:2014599 AT1G76290 [Arabidopsis thaliana (taxid:3702)]

 Score = 1242 (442.3 bits), Expect = 1.8e-126, P = 1.8e-126
 Identities = 253/540 (46%), Positives = 348/540 (64%)

Query:    14 SANNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIV 73
             SAN VPL+PI FLERAA V+G  TS++YG ++++W QT   C++LASAL+ L +SR D+V
Sbjct:     8 SANYVPLSPISFLERAAVVFGSRTSVVYGDIQYTWHQTRDRCVRLASALSDLGLSRHDVV 67

Query:    74 AAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQN 133
             AA+APN+PAL +L+F  PMAGAVL  LNT  DS  LA  L + + K+ FVD +F+ V + 
Sbjct:    68 AALAPNVPALCELYFGAPMAGAVLCVLNTTFDSQMLAMALEKTKPKVFFVDSEFLSVAEE 127

Query:   134 ALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQP 193
             +L +LS     ++ PL++TI E     P+  S           Y D L  G  +F+ ++P
Sbjct:   128 SLSLLS---NIEEKPLIITITE----NPTEQSKYEQ-------YEDFLSTGNPNFKPIRP 173

Query:   194 NHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGW 253
               ECDPI++N+TSG+T  PK VVYSHRGAYLN+ A     +++ MPV+L T+ M+ C+GW
Sbjct:   174 VDECDPIALNFTSGTTSTPKCVVYSHRGAYLNATAVGVMNEMKPMPVYLCTVPMYHCSGW 233

Query:   254 CCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRK 313
             C  W + A GG+ VC+R V+ ++IFDSI+ HKVT+  G P +LNMIANA  S +      
Sbjct:   234 CYIWTVTAFGGVIVCLREVNDEVIFDSIVKHKVTNFGGSPPVLNMIANARDSVKKSFPWT 293

Query:   314 VIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTK 373
             V ++  G  P  EV+ ++   GF +  AYG +EV G      W PE E+   + E    K
Sbjct:   294 VQVMSGGSSPP-EVMLKLKKLGFKVMMAYGCSEVYGLGTACLWMPEWETLP-EEESLRLK 351

Query:   374 HREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGW 433
              R+GLN+   + VDV    TMKSVPHDGKT+  +  R NTVM GYFK+ +ATE AFR GW
Sbjct:   352 ARDGLNHFAKEAVDVLDPTTMKSVPHDGKTIRVIALRGNTVMSGYFKDKEATEAAFRGGW 411

Query:   434 YHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQL 493
             Y + D+ V +PDGY+Q KDR +D+I  G EI+ S E+E +L S+P V +A VVG+ D+ L
Sbjct:   412 YWSRDMGVIDPDGYIQFKDRSQDVITCGGEIVGSKEIEGILYSHPAVYDAGVVGRPDETL 471

Query:   494 KEVPVAFVKLKEGREASPEELVTFCGDELPSC---MVPRAIFFEDIPVNSTGKVQKFVLR 550
              E   AFVKLKEG EA  EE++ FC  +L +    M+P+ + F D+P   TGK++K VLR
Sbjct:   472 GESMCAFVKLKEGAEAREEEIIEFCKRKLGNKNMKMIPKTVVFSDVPKTPTGKIRKNVLR 531

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

TIGR_CMR|SPO_0677 SPO_0677 "AMP-binding protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 1203 (428.5 bits), Expect = 2.4e-122, P = 2.4e-122
 Identities = 241/541 (44%), Positives = 337/541 (62%)

Query:    15 ANNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVA 74
             AN  PL+P+ ++ER A VY D  S++YG  R++W +T+  C +LASALA   + +GD V+
Sbjct:    16 ANFTPLSPLSYIERTAAVYPDYPSVVYGDRRYTWAETYTRCRRLASALAGRGLGKGDTVS 75

Query:    75 AMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNA 134
              +A NIP +Y+ HF VPMAGAVL+A+NTRLD+  +A IL   EA+++ VD +F EVV++A
Sbjct:    76 IIAANIPEMYEAHFGVPMAGAVLNAINTRLDAPIIAFILSHAEARVLIVDPEFSEVVRDA 135

Query:   135 LDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPN 194
             L       + D+  LLV     D   PS    A   P G+L Y+ LL  G  DF+   P 
Sbjct:   136 LA------QIDRPDLLVV----DIEDPS---FAGGAPVGTLSYDALLAEGDPDFDWSLPG 182

Query:   195 HECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWC 254
              E D I++NYTSG+TG+PKGVVY HRGA LN+ + I    +    V+LWTL MF CNGWC
Sbjct:   183 DEWDAIALNYTSGTTGNPKGVVYHHRGAALNATSNILTWGMPQHAVYLWTLPMFHCNGWC 242

Query:   255 CTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKV 314
               W MAA  G++VC+R V  + I+ +    KVTH CG P +LNM+ANA          ++
Sbjct:   243 FPWTMAANAGVSVCLRAVRDEPIYRAFREEKVTHFCGAPIVLNMLANAP-DHMKDFDHQI 301

Query:   315 IIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKH 374
              ++ AG  P   V+E++   G ++ H YG+TE  GP++V  WK E +      E    K 
Sbjct:   302 KVMTAGAPPPAAVIEKMEAMGVDVTHVYGLTETYGPSVVCAWKEEWDGRP-GAERAALKV 360

Query:   375 REGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWY 434
             R+G+  + + G+ V    T++ VP DG+T+GE+  + N VM GY KNP AT+ AFR GW+
Sbjct:   361 RQGVRYVALSGLMVADPETLEPVPADGETMGEIFMQGNIVMKGYLKNPDATDRAFRGGWF 420

Query:   435 HTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLK 494
              +GDL V +PDGY+ +KDR KDIIISG E ISS+EVE VL  +P V+EAAVV + D++  
Sbjct:   421 ASGDLGVMHPDGYIALKDRSKDIIISGGENISSVEVEDVLYKHPAVMEAAVVARPDEKWG 480

Query:   495 EVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFEDIPVNSTGKVQKFVLRGKVN 554
             E P AFV+LK G+     +L+  C   +     P+ + F ++P  STGK+QKF+LR +  
Sbjct:   481 ETPCAFVELKPGQSVEAADLIAHCRANMAHFKAPKTVVFGELPKTSTGKIQKFLLRERAR 540

Query:   555 A 555
             A
Sbjct:   541 A 541

GO:0008152 "metabolic process" evidence=ISS

GO:0016208 "AMP binding" evidence=ISS

UNIPROTKB|Q47WB3 CPS_4259 "AMP-binding protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 1189 (423.6 bits), Expect = 7.4e-121, P = 7.4e-121
 Identities = 236/540 (43%), Positives = 343/540 (63%)

Query:    15 ANNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVA 74
             AN + LTPI FLERAA VY D T+ + G +R +W +  Q C + ASALA+  I RGD V+
Sbjct:    16 ANYMALTPISFLERAAFVYPDKTATVNGDIRHTWLEVFQRCSRFASALAKRGIGRGDTVS 75

Query:    75 AMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNA 134
              +APNI   +++HF VPM+GAVL+++NTRLD+  +A IL   E K++  D +F  +V+ A
Sbjct:    76 VIAPNISEHFEVHFGVPMSGAVLNSINTRLDAEAIAFILVHAETKVLITDKEFSPIVKKA 135

Query:   135 LDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPN 194
             L ++ P HK    PL++ I + +  +            GSL Y+ LLE G +DFE ++P 
Sbjct:   136 LRMI-P-HK----PLVIDIDDPNFNEGQLI--------GSLTYDQLLEEGDSDFESIRPK 181

Query:   195 HECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWC 254
             +E D IS+NYTSG+TGDPKGVVY +RGAYLN+++ +    + + PV+LWTL MF CNGWC
Sbjct:   182 NEWDAISLNYTSGTTGDPKGVVYHYRGAYLNAVSNVMSWSMGEHPVYLWTLPMFHCNGWC 241

Query:   255 CTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKV 314
               W++AA  G +V +R V A+ IF+ I   KV + CG P +LNM+  A  S +  +   V
Sbjct:   242 FPWSIAATAGTSVSLRHVRAEPIFNLIRSEKVGYFCGAPIVLNMLNGAEPSLKADINHPV 301

Query:   315 IIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKH 374
              ++ AG  P   V+E +   GF + H YG+TE  GP++V  W  E    + + + ++ K 
Sbjct:   302 KVMTAGAPPPASVIEGMEASGFKVTHTYGLTETYGPSVVCAWHDEWNEESPEKQAKL-KS 360

Query:   375 REGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWY 434
             R+G+ + ++  + V    T++ +P DG+++GE+  R N VM GY KNP  T+ AF  GW 
Sbjct:   361 RQGVRSPMLDQLMVADPETLEPMPKDGESVGEIFMRGNLVMKGYLKNPSTTQAAFDGGWL 420

Query:   435 HTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLK 494
             H+GD+AV + DGY+++KDR KD+IISG E ISS+EVE +L  +PKV E AVV K DD+  
Sbjct:   421 HSGDIAVWHSDGYIEIKDRSKDVIISGGENISSVEVEDILYRHPKVQEVAVVAKKDDKWG 480

Query:   495 EVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFEDIPVNSTGKVQKFVLRGKVN 554
             E P AF+      E + +E+++FC D +     P+ I F ++P  STGK+QKFVLR + N
Sbjct:   481 ETPCAFITPMPNVEITEQEMISFCRDNMAHFKAPKTIIFGELPKTSTGKIQKFVLRQQAN 540

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_4259 CPS_4259 "AMP-binding protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 1189 (423.6 bits), Expect = 7.4e-121, P = 7.4e-121
 Identities = 236/540 (43%), Positives = 343/540 (63%)

Query:    15 ANNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVA 74
             AN + LTPI FLERAA VY D T+ + G +R +W +  Q C + ASALA+  I RGD V+
Sbjct:    16 ANYMALTPISFLERAAFVYPDKTATVNGDIRHTWLEVFQRCSRFASALAKRGIGRGDTVS 75

Query:    75 AMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNA 134
              +APNI   +++HF VPM+GAVL+++NTRLD+  +A IL   E K++  D +F  +V+ A
Sbjct:    76 VIAPNISEHFEVHFGVPMSGAVLNSINTRLDAEAIAFILVHAETKVLITDKEFSPIVKKA 135

Query:   135 LDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPN 194
             L ++ P HK    PL++ I + +  +            GSL Y+ LLE G +DFE ++P 
Sbjct:   136 LRMI-P-HK----PLVIDIDDPNFNEGQLI--------GSLTYDQLLEEGDSDFESIRPK 181

Query:   195 HECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWC 254
             +E D IS+NYTSG+TGDPKGVVY +RGAYLN+++ +    + + PV+LWTL MF CNGWC
Sbjct:   182 NEWDAISLNYTSGTTGDPKGVVYHYRGAYLNAVSNVMSWSMGEHPVYLWTLPMFHCNGWC 241

Query:   255 CTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKV 314
               W++AA  G +V +R V A+ IF+ I   KV + CG P +LNM+  A  S +  +   V
Sbjct:   242 FPWSIAATAGTSVSLRHVRAEPIFNLIRSEKVGYFCGAPIVLNMLNGAEPSLKADINHPV 301

Query:   315 IIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKH 374
              ++ AG  P   V+E +   GF + H YG+TE  GP++V  W  E    + + + ++ K 
Sbjct:   302 KVMTAGAPPPASVIEGMEASGFKVTHTYGLTETYGPSVVCAWHDEWNEESPEKQAKL-KS 360

Query:   375 REGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWY 434
             R+G+ + ++  + V    T++ +P DG+++GE+  R N VM GY KNP  T+ AF  GW 
Sbjct:   361 RQGVRSPMLDQLMVADPETLEPMPKDGESVGEIFMRGNLVMKGYLKNPSTTQAAFDGGWL 420

Query:   435 HTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLK 494
             H+GD+AV + DGY+++KDR KD+IISG E ISS+EVE +L  +PKV E AVV K DD+  
Sbjct:   421 HSGDIAVWHSDGYIEIKDRSKDVIISGGENISSVEVEDILYRHPKVQEVAVVAKKDDKWG 480

Query:   495 EVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFEDIPVNSTGKVQKFVLRGKVN 554
             E P AF+      E + +E+++FC D +     P+ I F ++P  STGK+QKFVLR + N
Sbjct:   481 ETPCAFITPMPNVEITEQEMISFCRDNMAHFKAPKTIIFGELPKTSTGKIQKFVLRQQAN 540

GO:0008150 "biological_process" evidence=ND

GO:0016208 "AMP binding" evidence=ISS

TAIR|locus:2009774 BZO1 "benzoyloxyglucosinolate 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1181 (420.8 bits), Expect = 5.2e-120, P = 5.2e-120
 Identities = 251/557 (45%), Positives = 346/557 (62%)

Query:    10 LCSASANNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISR 69
             LC A  NNVPLTP+ FL+RA+  Y + TSIIYG  RF+W QT+  C +LA++L  L IS+
Sbjct:     6 LCEA--NNVPLTPMTFLKRASECYPNRTSIIYGKTRFTWPQTYDRCCRLAASLISLNISK 63

Query:    70 GDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVE 129
              D+V+ MAPN PALY++HFAVPMAGAVL+ +NTRLD+ ++A+ILR  + KI+F+D  F  
Sbjct:    64 NDVVSVMAPNTPALYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILFLDRSFEA 123

Query:   130 VVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKAD-- 187
             + + +L +LS        P++  I E D   P   S         LDY  L++ G+    
Sbjct:   124 LARESLHLLSSEDSNLNLPVIF-IHENDF--PKRASFEE------LDYECLIQRGEPTPS 174

Query:   188 --FEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTL 245
                 M +   E DPIS+NYTSG+T DPKGVV SHRGAYL +L+ I   ++   PV+LWTL
Sbjct:   175 MVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLCTLSAIIGWEMGTCPVYLWTL 234

Query:   246 DMFRCNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASAS 305
              MF CNGW  TW  AA GG +VC+R V+A  I+ +I +H VTH+C  P + N++   ++ 
Sbjct:   235 PMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSL 294

Query:   306 DQNQLQRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSAL 365
             D +     V ++  G  P   ++++V   GF + HAYG TE  GP +  +W+ E      
Sbjct:   295 DLSPRSGPVHVLTGGSPPPAALVKKVQRLGFQVMHAYGQTEATGPILFCEWQDEWNRLPE 354

Query:   366 DHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKAT 425
             + + E+ K R+G++ L +  VDVK + T KS P DGKT+GE++ + +++M GY KNPKAT
Sbjct:   355 NQQMEL-KARQGISILGLADVDVKNKETQKSAPRDGKTMGEILIKGSSIMKGYLKNPKAT 413

Query:   426 EEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAV 485
              EAF++GW +TGD+ V +PDG+V++KDR KDIIISG E ISS+EVE VL   PKVLE AV
Sbjct:   414 FEAFKHGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETAV 473

Query:   486 VGKVDDQLKEVPVAFVKL-------KEGR----EASPEELVTFCGDELPSCMVPR-AIFF 533
             V        E P AFV L       KE R    +     L+ +C + LP  M PR  +F 
Sbjct:   474 VAMPHPTWGETPCAFVVLEKSETTIKEDRVDKFQTRERNLIEYCRENLPHFMCPRKVVFL 533

Query:   534 EDIPVNSTGKVQKFVLR 550
             E++P N  GK+ K  LR
Sbjct:   534 EELPKNGNGKILKPKLR 550

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0005777 "peroxisome" evidence=ISS

GO:0018858 "benzoate-CoA ligase activity" evidence=IDA

GO:0019761 "glucosinolate biosynthetic process" evidence=IMP

TAIR|locus:2009714 AAE12 "acyl activating enzyme 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 1164 (414.8 bits), Expect = 3.3e-118, P = 3.3e-118
 Identities = 245/556 (44%), Positives = 348/556 (62%)

Query:    10 LCSASANNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISR 69
             LC A  NNVPLTPI FL+RA+  Y + TSIIYG  RF+W QT+  C +LA++L  L I +
Sbjct:     6 LCEA--NNVPLTPITFLKRASECYPNRTSIIYGKTRFTWPQTYDRCCRLAASLISLNIGK 63

Query:    70 GDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVE 129
              D+V+ +APN PA+Y++HFAVPMAGAVL+ +NTRLD+ ++A+ILR  + KI+F+   F  
Sbjct:    64 NDVVSVVAPNTPAMYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILFIYRSFEP 123

Query:   130 VVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKAD-- 187
             + +  L +LS        P++  I E D   P   S      S   DY  L++ G+    
Sbjct:   124 LAREILQLLSSEDSNLNLPVIF-IHEIDF--PKRVS------SEESDYECLIQRGEPTPL 174

Query:   188 --FEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTL 245
                 M     E DPIS+NYTSG+T DPKGVV SHRGAYL++L+ I   ++   PV+LWTL
Sbjct:   175 LLARMFCIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTL 234

Query:   246 DMFRCNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASAS 305
              MF CNGW  TW  AA GG +VC+R V+A  I+ +I +H VTH+C  P + N++   ++ 
Sbjct:   235 PMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSL 294

Query:   306 DQNQLQRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSAL 365
             D +     V ++  G  P   ++++V   GF + HAYG+TE  GP +  +W+ E      
Sbjct:   295 DLSHRSGPVHVLTGGSPPPAALVKKVQRLGFQVMHAYGLTEATGPVLFCEWQDEWNRLPE 354

Query:   366 DHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKAT 425
             + + E+ K R+GL+ L +  VDV+ + T +SVP DGKT+GE++ + +++M GY KNPKAT
Sbjct:   355 NQQMEL-KARQGLSILGLTEVDVRNKETQESVPRDGKTMGEIVMKGSSIMKGYLKNPKAT 413

Query:   426 EEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAV 485
              EAF++GW ++GD+ V +PDG+V++KDR KDIIISG E ISS+EVE ++   PKVLE AV
Sbjct:   414 YEAFKHGWLNSGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENIIYKYPKVLETAV 473

Query:   486 VGKVDDQLKEVPVAFVKLKEGR---EASPEELVT-------FCGDELPSCMVPR-AIFFE 534
             V        E P AFV L++G    E   ++LVT       +C + LP  M PR  +F +
Sbjct:   474 VAMPHPTWGETPCAFVVLEKGETNNEDREDKLVTKERDLIEYCRENLPHFMCPRKVVFLD 533

Query:   535 DIPVNSTGKVQKFVLR 550
             ++P N  GK+ K  LR
Sbjct:   534 ELPKNGNGKILKPKLR 549

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

TAIR|locus:2171357 AT5G16340 [Arabidopsis thaliana (taxid:3702)]

 Score = 1157 (412.3 bits), Expect = 1.8e-117, P = 1.8e-117
 Identities = 237/542 (43%), Positives = 349/542 (64%)

Query:    14 SANNVPLTPIDFLERAAHVYGDATSIIYGT-VRFSWRQTHQICLKLASALAQLKISRGDI 72
             +AN+ PLTPI FLERAA VYGD TSI+YG+   ++WR+T+  CL++AS+L+ + I R D+
Sbjct:     8 AANSPPLTPIGFLERAATVYGDCTSIVYGSNTVYTWRETNLRCLRVASSLSSIGIGRSDV 67

Query:    73 VAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQ 132
             V+ ++PN PA+Y+L FAVPM+GA+L+ +NTRLD+ T++ +LR  E+K++FVD   V++  
Sbjct:    68 VSVLSPNTPAMYELQFAVPMSGAILNNINTRLDARTVSVLLRHCESKLLFVDVFSVDLAV 127

Query:   133 NALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQ 192
              A+ +++ +      P+LV I + +  +     VA+     S  Y+DL+E G   F+ ++
Sbjct:   128 EAVSMMTTD-----PPILVVIADKEE-EGGVADVAD-LSKFSYTYDDLIERGDPGFKWIR 180

Query:   193 PNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNG 252
             P  E DP+ +NYTSG+T  PKGVV+ HRG ++ S+  +    V   PV+LWTL +F  NG
Sbjct:   181 PESEWDPVVLNYTSGTTSAPKGVVHCHRGIFVMSVDSLIDWAVPKNPVYLWTLPIFHSNG 240

Query:   253 WCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQ-LQ 311
             W   W +AAVGG NVC+R   A +I+  I  H VTH+CG P +LNM+   SA+ ++Q L 
Sbjct:   241 WTNPWGIAAVGGTNVCLRKFDAPLIYRLIRDHGVTHMCGAPVVLNML---SATQESQPLN 297

Query:   312 RKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEM 371
               V I+ AG  P   VL +  + GF I H YG+TE  G  +   WKP+           +
Sbjct:   298 HPVNILTAGSPPPATVLLRAESIGFVISHGYGLTETAGVIVSCAWKPKWNHLPASDRARL 357

Query:   372 TKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRN 431
              K R+G+  +    +DV    +  SV  +G+T+GE++ R ++VMLGY K+P  TE+A +N
Sbjct:   358 -KARQGVRTVGFTEIDVVDPESGLSVERNGETVGEIVMRGSSVMLGYLKDPVGTEKALKN 416

Query:   432 GWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDD 491
             GW++TGD+ V + DGY+++KDR KDIII+G E +SS+EVE VL + P V E AVV + D+
Sbjct:   417 GWFYTGDVGVIHSDGYLEIKDRSKDIIITGGENVSSVEVETVLYTIPAVNEVAVVARPDE 476

Query:   492 QLKEVPVAFVKLKEGREASP--EELVTFCGDELPSCMVPRAI-FFEDIPVNSTGKVQKFV 548
                E P AFV LK G    P  EEL+ +C  ++P  MVP+ + F +++P +STGKV KFV
Sbjct:   477 FWGETPCAFVSLKNGFSGKPTEEELMEYCRKKMPKYMVPKTVSFMDELPKSSTGKVTKFV 536

Query:   549 LR 550
             LR
Sbjct:   537 LR 538

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
F4HUK6	AAE1_ARATH	6, ., 2, ., 1, ., -	0.5312	0.9519	0.9622	yes	no
Q5SKN9	LCFCS_THET8	6, ., 2, ., 1, ., 3	0.3134	0.8629	0.8964	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	562
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	0.0
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	0.0
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	0.0
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	1e-179
cd05915	509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	1e-148
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	1e-118
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	1e-113
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	1e-113
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	2e-81
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	1e-75
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	6e-75
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	1e-73
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	2e-73
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	9e-72
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	2e-69
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	2e-66
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	6e-66
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	2e-65
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	7e-64
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	1e-62
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	8e-59
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	1e-55
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	4e-55
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	1e-53
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	2e-52
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	2e-51
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	5e-51
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	1e-50
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	8e-50
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	1e-49
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	8e-49
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	2e-47
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	2e-47
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	2e-45
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	1e-44
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	1e-44
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	5e-41
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	5e-40
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	8e-40
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	1e-39
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	6e-39
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	8e-39
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	1e-38
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	4e-38
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	2e-37
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	3e-37
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	3e-37
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	3e-37
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	6e-37
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	8e-37
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	2e-36
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	5e-36
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	6e-36
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	6e-35
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	2e-34
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	2e-34
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	3e-34
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	4e-34
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	6e-34
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	8e-34
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	3e-32
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	8e-32
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	8e-32
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	1e-31
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	2e-31
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	3e-31
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	4e-31
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	4e-31
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	1e-29
cd05928	530	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co	1e-29
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	2e-29
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	6e-29
PRK08279	600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	9e-29
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	2e-28
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	4e-28
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	1e-27
PRK13382	537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	6e-27
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	1e-26
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	9e-26
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	3e-25
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	3e-25
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	4e-25
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	5e-25
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	8e-25
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	1e-24
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	4e-24
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	2e-23
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	2e-23
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	3e-23
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	6e-23
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	1e-22
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	2e-22
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	2e-22
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	2e-21
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	1e-20
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	1e-19
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	3e-19
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	3e-19
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	5e-19
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	9e-19
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	1e-18
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	2e-18
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	6e-18
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	1e-17
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	2e-17
PRK00174	637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	2e-17
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	3e-17
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	3e-17
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	5e-17
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	1e-16
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	1e-16
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	2e-16
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	2e-16
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	2e-16
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	3e-16
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	4e-16
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	6e-16
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	7e-16
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	2e-15
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	2e-15
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	3e-15
PRK13383	516	PRK13383, PRK13383, acyl-CoA synthetase; Provision	2e-14
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	2e-14
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	3e-14
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	8e-14
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	3e-13
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	4e-13
cd05943	616	cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac	1e-12
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	2e-12
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	3e-12
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	9e-12
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	1e-11
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	2e-11
cd05938	535	cd05938, hsFATP2a_ACSVL_like, Fatty acid transport	2e-11
TIGR01217	652	TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase	2e-11
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	3e-11
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	3e-11
PRK03584	655	PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr	6e-11
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	1e-10
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	1e-10
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	2e-10
PLN02654	666	PLN02654, PLN02654, acetate-CoA ligase	2e-10
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	3e-10
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	4e-10
PRK07445	452	PRK07445, PRK07445, O-succinylbenzoic acid--CoA li	4e-10
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	7e-10
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	7e-10
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	2e-09
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	2e-09
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	3e-09
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	4e-09
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	4e-09
PRK06060	705	PRK06060, PRK06060, acyl-CoA synthetase; Validated	6e-09
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	7e-09
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	8e-09
PRK10524	629	PRK10524, prpE, propionyl-CoA synthetase; Provisio	9e-09
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	1e-08
TIGR02316	628	TIGR02316, propion_prpE, propionate--CoA ligase	1e-08
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	2e-08
PLN02614	666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	2e-08
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	3e-08
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	9e-08
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	1e-07
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	1e-07
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	2e-07
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	2e-07
PTZ00237	647	PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi	2e-07
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	3e-07
PRK08308	414	PRK08308, PRK08308, acyl-CoA synthetase; Validated	3e-07
PRK10252	1296	PRK10252, entF, enterobactin synthase subunit F; P	3e-07
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	4e-07
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	4e-07
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	7e-07
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	8e-07
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	1e-06
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	1e-06
cd05943	616	cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac	1e-06
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	2e-06
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	3e-06
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	3e-06
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	4e-06
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	5e-06
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	5e-06
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	9e-06
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	1e-05
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	1e-05
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	2e-05
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	2e-05
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	2e-05
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	3e-05
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	3e-05
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	5e-05
PRK10252	1296	PRK10252, entF, enterobactin synthase subunit F; P	6e-05
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	7e-05
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	7e-05
PRK05851	525	PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c	9e-05
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	1e-04
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	2e-04
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	3e-04
TIGR02316	628	TIGR02316, propion_prpE, propionate--CoA ligase	3e-04
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	4e-04
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	4e-04
PTZ00342	746	PTZ00342, PTZ00342, acyl-CoA synthetase; Provision	4e-04
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	5e-04
PRK12476	612	PRK12476, PRK12476, putative fatty-acid--CoA ligas	5e-04
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	6e-04
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	6e-04
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	7e-04
PRK00174	637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	8e-04
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	8e-04
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	0.001
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	0.001
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	0.002
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	0.002
cd05939	474	cd05939, hsFATP4_like, Fatty acid transport protei	0.003
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	0.004
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	0.004
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	0.004

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score =  705 bits (1822), Expect = 0.0
 Identities = 267/534 (50%), Positives = 357/534 (66%), Gaps = 15/534 (2%)

Query: 17  NVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAM 76
            VPLTP+ FLERAA VY D T+++YG  R+++R+T+  C +LASAL++L I +GD+VA +
Sbjct: 1   YVPLTPLSFLERAAKVYPDRTAVVYGDRRYTYRETYDRCRRLASALSKLGIGKGDVVAVL 60

Query: 77  APNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALD 136
           APN PA+ + HF VPMAGAVL  LNTRLD+  +A IL   EAK++FVD +F+ + + AL 
Sbjct: 61  APNTPAMLEAHFGVPMAGAVLVPLNTRLDADDIAFILNHSEAKVLFVDQEFLSLAEEALA 120

Query: 137 ILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHE 196
           +LS                       + +      S   DY DLL  G  D   + P+ E
Sbjct: 121 LLS-----------TKEIIDTEIIVISPAAE---DSEEGDYEDLLAGGDPDPLPIPPDDE 166

Query: 197 CDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCT 256
            DPIS+NYTSG+TG+PKGVVY+HRGAYLN+L  +    + D PV+LWTL MF CNGWC  
Sbjct: 167 WDPISLNYTSGTTGNPKGVVYTHRGAYLNALGNVIEWGMPDRPVYLWTLPMFHCNGWCFP 226

Query: 257 WAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVII 316
           WA+ AVGG +VC+R V A  I+D I  HKVTHLCG P +LNM+ANA  +D+  L R V +
Sbjct: 227 WAITAVGGTHVCLRKVDAPAIYDLIEKHKVTHLCGAPTVLNMLANAPEADKLPLPRPVRV 286

Query: 317 VIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHRE 376
           + AG  P   V++++   GF + H YG+TE  GP  V +WKPE ++   + E    K R+
Sbjct: 287 MTAGAPPPPAVIKKMEELGFEVTHVYGLTETYGPITVCEWKPEWDALPAE-ERARLKARQ 345

Query: 377 GLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHT 436
           G+  + ++ VDV    TMK VP DGKT+GE++ R NTVM GY+KNP+ATEEAF  GW+H+
Sbjct: 346 GVRYVGLEEVDVVDPETMKDVPRDGKTIGEIVMRGNTVMKGYYKNPEATEEAFAGGWFHS 405

Query: 437 GDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEV 496
           GDLAV +PDGY+++KDR KDIIISG E ISS+EVE VL  +P VLEAAVV + D++  E 
Sbjct: 406 GDLAVVHPDGYIEIKDRSKDIIISGGENISSIEVEGVLYKHPAVLEAAVVARPDEKWGET 465

Query: 497 PVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFEDIPVNSTGKVQKFVLR 550
           P AFV LK G   + EEL+ +C ++L    VP+ + F ++P  +TGK+QKFVLR
Sbjct: 466 PCAFVVLKPGASVTEEELIEYCREKLAHFKVPKTVEFVELPKTATGKIQKFVLR 519

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score =  682 bits (1761), Expect = 0.0
 Identities = 272/545 (49%), Positives = 356/545 (65%), Gaps = 18/545 (3%)

Query: 15  ANNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVA 74
           AN VPLTP+ FLERAA VY D  ++I+G  R +W +T+  C +LASALA+  I RGD VA
Sbjct: 13  ANYVPLTPLSFLERAAEVYPDRPAVIHGDRRRTWAETYARCRRLASALARRGIGRGDTVA 72

Query: 75  AMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNA 134
            + PNIPA+ + HF VPMAGAVL+ LNTRLD+A++A +LR  EAK++ VD +F EV + A
Sbjct: 73  VLLPNIPAMVEAHFGVPMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREA 132

Query: 135 LDILSPNHKCDKAPLLVTI--PECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQ 192
           L +L         PL++ +  PE   Y             G+LDY   L  G  DF    
Sbjct: 133 LALLP-----GPKPLVIDVDDPE---YPGGR-------FIGALDYEAFLASGDPDFAWTL 177

Query: 193 PNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNG 252
           P  E D I++NYTSG+TG+PKGVVY HRGAYLN+L+ I    +   PV+LWTL MF CNG
Sbjct: 178 PADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPMFHCNG 237

Query: 253 WCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQR 312
           WC  W +AA  G NVC+R V  K+IFD I  H VTH CG P +L+ + NA A  +  +  
Sbjct: 238 WCFPWTVAARAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRAGIDH 297

Query: 313 KVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMT 372
            V  ++AG  P   V+ ++   GF++ H YG+TE  GPA V  W+PE ++  LD   ++ 
Sbjct: 298 PVHAMVAGAAPPAAVIAKMEEIGFDLTHVYGLTETYGPATVCAWQPEWDALPLDERAQL- 356

Query: 373 KHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNG 432
           K R+G+   L +GV V   +TM+ VP DG+T+GE+MFR N VM GY KNPKATEEAF  G
Sbjct: 357 KARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAFAGG 416

Query: 433 WYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQ 492
           W+HTGDLAV +PDGY+++KDR KDIIISG E ISS+EVE VL  +P VL AAVV K D +
Sbjct: 417 WFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPDPK 476

Query: 493 LKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFEDIPVNSTGKVQKFVLRGK 552
             EVP AFV+LK+G  A+ EE++  C + L    VP+A+ F ++P  STGK+QKFVLR +
Sbjct: 477 WGEVPCAFVELKDGASATEEEIIAHCREHLAGFKVPKAVVFGELPKTSTGKIQKFVLREQ 536

Query: 553 VNATA 557
             +  
Sbjct: 537 AKSLK 541

Length = 545

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score =  563 bits (1453), Expect = 0.0
 Identities = 251/547 (45%), Positives = 352/547 (64%), Gaps = 15/547 (2%)

Query: 15  ANNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVA 74
           AN   LTP+ FLERAA V+    S+++G+VR++W QT+Q C +LASALA+  I  G  VA
Sbjct: 15  ANYTALTPLWFLERAAVVHPTRKSVVHGSVRYTWAQTYQRCRRLASALAKRSIGPGSTVA 74

Query: 75  AMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNA 134
            +APNIPA+Y+ HF VPMAGAV++ +N RL++ T+A +L   +++++ VD +F  + + A
Sbjct: 75  VIAPNIPAMYEAHFGVPMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEA 134

Query: 135 LDILSPNHKCD-KAPLLVTI--PECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMM 191
           L IL+   K   K PLL+ I  P CD       S+      G+++Y   LE G  +F   
Sbjct: 135 LKILAEKKKSSFKPPLLIVIGDPTCDPK-----SLQYALGKGAIEYEKFLETGDPEFAWK 189

Query: 192 QPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCN 251
            P  E   I++ YTSG+T  PKGVV  HRGAYL +L+      + +  V+LWTL MF CN
Sbjct: 190 PPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYLWTLPMFHCN 249

Query: 252 GWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQ-NQL 310
           GWC TW +AA+ G N+C+R V+AK I+ +I  + VTH C  P +LN I NA  S+    L
Sbjct: 250 GWCFTWTLAALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETILPL 309

Query: 311 QRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHE 370
            R V ++ AG  P   VL  ++  GF + H YG++E  GP+ V  WKPE +S   + +  
Sbjct: 310 PRVVHVMTAGAAPPPSVLFAMSEKGFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQAR 369

Query: 371 MTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFR 430
           +   R+G+  + ++G+DV    TMK VP DGKT+GE++ R N VM GY KNPKA EEAF 
Sbjct: 370 LNA-RQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFA 428

Query: 431 NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVD 490
           NGW+H+GDL V++PDGY+++KDR KDIIISG E ISSLEVE V+ ++P VLEA+VV + D
Sbjct: 429 NGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASVVARPD 488

Query: 491 DQLKEVPVAFVKLKEGREASPE-----ELVTFCGDELPSCMVPRAIFFEDIPVNSTGKVQ 545
           ++  E P AFV LK G + S E     +++ FC + LP+  VP+++ F  +P  +TGK+Q
Sbjct: 489 ERWGESPCAFVTLKPGVDKSDEAALAEDIMKFCRERLPAYWVPKSVVFGPLPKTATGKIQ 548

Query: 546 KFVLRGK 552
           K VLR K
Sbjct: 549 KHVLRAK 555

Length = 567

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score =  516 bits (1330), Expect = e-179
 Identities = 243/556 (43%), Positives = 347/556 (62%), Gaps = 27/556 (4%)

Query: 10  LCSASANNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISR 69
           LC A  NNVPLTPI FL+RA+  Y + TSIIYG  RF+W QT+  C +LA++L  L I++
Sbjct: 6   LCEA--NNVPLTPITFLKRASECYPNRTSIIYGKTRFTWPQTYDRCCRLAASLISLNITK 63

Query: 70  GDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVE 129
            D+V+ +APN PA+Y++HFAVPMAGAVL+ +NTRLD+ ++A+ILR  + KI+FVD  F  
Sbjct: 64  NDVVSVLAPNTPAMYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEP 123

Query: 130 VVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKAD-- 187
           + +  L +L  +   +    ++ I E D              S  LDY  L++ G+    
Sbjct: 124 LAREVLHLL-SSEDSNLNLPVIFIHEIDF--------PKRPSSEELDYECLIQRGEPTPS 174

Query: 188 --FEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTL 245
               M +   E DPIS+NYTSG+T DPKGVV SHRGAYL++L+ I   ++   PV+LWTL
Sbjct: 175 LVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTL 234

Query: 246 DMFRCNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASAS 305
            MF CNGW  TW  AA GG +VC+R V+A  I+ +I +H VTH+C  P + N++   ++ 
Sbjct: 235 PMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSL 294

Query: 306 DQNQLQRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSAL 365
           D +     V ++  G  P   ++++V   GF + HAYG+TE  GP +  +W+ E      
Sbjct: 295 DLSPRSGPVHVLTGGSPPPAALVKKVQRLGFQVMHAYGLTEATGPVLFCEWQDEWNRLP- 353

Query: 366 DHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKAT 425
           +++    K R+G++ L +  VDVK + T +SVP DGKT+GE++ + +++M GY KNPKAT
Sbjct: 354 ENQQMELKARQGVSILGLADVDVKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKAT 413

Query: 426 EEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAV 485
            EAF++GW +TGD+ V +PDG+V++KDR KDIIISG E ISS+EVE VL   PKVLE AV
Sbjct: 414 SEAFKHGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETAV 473

Query: 486 VGKVDDQLKEVPVAFVKLKEGREASPE----------ELVTFCGDELPSCMVPR-AIFFE 534
           V        E P AFV L++G     +          +L+ +C + LP  M PR  +F +
Sbjct: 474 VAMPHPTWGETPCAFVVLEKGETTKEDRVDKLVTRERDLIEYCRENLPHFMCPRKVVFLQ 533

Query: 535 DIPVNSTGKVQKFVLR 550
           ++P N  GK+ K  LR
Sbjct: 534 ELPKNGNGKILKPKLR 549

Length = 579

>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score =  436 bits (1121), Expect = e-148
 Identities = 152/539 (28%), Positives = 226/539 (41%), Gaps = 38/539 (7%)

Query: 19  PLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAP 78
                    R   V    T       R ++ + +Q   +L   L  L +  GD VA +  
Sbjct: 1   LERAAALFGRKEVVSRLHT---GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGF 57

Query: 79  NIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDIL 138
           N     + +FAVP  GAVL   N RL    +A IL   E K++  D   + +V+     L
Sbjct: 58  NHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGEL 117

Query: 139 SPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECD 198
                        T+                    + +     E    +        E  
Sbjct: 118 K------------TVQHFVVMD-----------EKAPEGYLAYEEALGEEADPVRVPERA 154

Query: 199 PISVNYTSGSTGDPKGVVYSHRGAYLNSLAQ--ISRCDVRDMPVFLWTLDMFRCNGWCCT 256
              + YT+G+TG PKGVVYSHR   L+SLA   +    + +  V L  + MF  N WC  
Sbjct: 155 ACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLP 214

Query: 257 WAMAAVGGINVCIRTV-SAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVI 315
           +A   VG   V          + +      VT   G P +   +A+   S  ++L+    
Sbjct: 215 YAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRR 274

Query: 316 IVIAGVLPTIEVLEQVANFG-FNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKH 374
           +V+ G       L          +R  YG+TE     +    K   ES + + E    K 
Sbjct: 275 LVVGGSAAP-RSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLS-EEEKLTLKA 332

Query: 375 REGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATE-EAFRNGW 433
           + GL    +  + V  +     VP DGK LGEV  +   +  GY+ N +AT      +G+
Sbjct: 333 KTGLPIP-LVRLRVADEEGR-PVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGF 390

Query: 434 YHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQL 493
           + TGD+AV + +GYV++KDR KD+I SG E ISS+++E  L+ +PKV EAAVV     + 
Sbjct: 391 FRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKW 450

Query: 494 KEVPVAFVKLKEGREASPEELVTFCGDELPSC-MVPRAIFF-EDIPVNSTGKVQKFVLR 550
           +E P+A V  +   + +PEEL         +   +P A  F E+IP  S GK  K  LR
Sbjct: 451 QERPLAVVVPRGE-KPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALR 508

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  359 bits (923), Expect = e-118
 Identities = 161/544 (29%), Positives = 238/544 (43%), Gaps = 38/544 (6%)

Query: 15  ANNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVA 74
             + PLT    L   A  + D  ++ +   R ++ +  +   +LA+AL  L + +GD VA
Sbjct: 1   MQDYPLTIGRILRHGARKHPDKEAVYFDGRRTTYAELDERVNRLANALRALGVKKGDRVA 60

Query: 75  AMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNA 134
               N     + +FAVP  GAVL  +N RL    +A IL   E +++ VD +FV ++   
Sbjct: 61  VFDWNSHEYLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAI 120

Query: 135 LDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPN 194
           L  L            +   +                    +Y +LL      F      
Sbjct: 121 LPQLPTVRTV------IVEGDGPAAPL---------APEVGEYEELLAAASDTF----DF 161

Query: 195 HECDPISVN---YTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCN 251
            + D        YTSG+TG PKGVV SHR  +L+SLA  +   +    V+L  + MF  +
Sbjct: 162 PDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVH 221

Query: 252 GWCCTWAMAAV--GGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQ 309
            W       A+  G   V  R    + + D I   +VT     P I  M+  A  +    
Sbjct: 222 AW--GLPYLALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVD 279

Query: 310 LQR-KVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHE 368
               +++I     LP   + E    FG ++   YGMTE   P +     PE      D  
Sbjct: 280 FSSLRLVIYGGAALPPALLREFKEKFGIDLVQGYGMTET-SPVVSVLP-PE------DQL 331

Query: 369 HEMTKHREGLNNLLIQGVDVKQQN-TMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEE 427
                 R       + GV+ +  +     +P DG  +GE++ R   +M GY+  P+AT E
Sbjct: 332 PGQWTKR-RSAGRPLPGVEARIVDDDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAE 390

Query: 428 AFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVG 487
               GW HTGD+   + DGY+ + DR KD+IISG E I   E+E  L  +P V E AV+G
Sbjct: 391 TIDGGWLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIG 450

Query: 488 KVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFF-EDIPVNSTGKVQK 546
             D++  E PVA V LK G     +EL  F    L    +P+ I F +++P  S GK+ K
Sbjct: 451 VPDEKWGERPVAVVVLKPGATLDAKELRAFLRGRLAKFKLPKRIAFVDELPRTSVGKILK 510

Query: 547 FVLR 550
            VLR
Sbjct: 511 RVLR 514

Length = 521

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score =  346 bits (890), Expect = e-113
 Identities = 180/542 (33%), Positives = 268/542 (49%), Gaps = 42/542 (7%)

Query: 25  FLERAAHVYGDATSIIY-----GTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPN 79
            LE AA  +GD   I+         R+++   ++   +LA+AL  L +  GD VA +A N
Sbjct: 1   ILEHAARYFGDRE-IVSRTPDGSIHRYTYADFYRRVRRLANALESLGVKPGDRVATLAWN 59

Query: 80  IPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILS 139
                +L+FAVP  GAVL  LN RL    +A I+   E K+IFVD  F+ +++     L 
Sbjct: 60  THRHLELYFAVPGMGAVLHTLNPRLSPEQIAYIINHAEDKVIFVDDDFLPLLEAIAPRL- 118

Query: 140 PNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNH-ECD 198
           P  K       V   + D  + S  +V          Y +LLE    ++E   P   E  
Sbjct: 119 PTVKAV-----VVYDDADMPETSLPNV--------YAYEELLEEESPEYEW--PELDENT 163

Query: 199 PISVNYTSGSTGDPKGVVYSHRGAYLNSLA-------QISRCDVRDMPVFLWTLDMFRCN 251
              + YTSG+TG+PKGVVYSHR   L++LA        +S  D   +PV    + MF  N
Sbjct: 164 AAGLCYTSGTTGNPKGVVYSHRSLVLHTLASALPDSLGLSESDTV-LPV----VPMFHVN 218

Query: 252 GWCCTWAMAAVGGINV-CIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQL 310
            W   +A   VG   V   R +    + D I   KVT   G P I   + N   ++   L
Sbjct: 219 AWGLPYAATMVGAKLVLPGRYLDPASLLDLIEEEKVTVSAGVPTIWLGLLNYLEANGKDL 278

Query: 311 QRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHE 370
                +V+ G      ++E++   G  + HA+GMTE   P               + E  
Sbjct: 279 SSLRRVVVGGSALPRSLIEKLEERGVEVIHAWGMTE-TSPLGTVSRLKPHLVDLPEEEKL 337

Query: 371 MTKHREGLNNLLIQGVDVKQQN-TMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAF 429
             + ++G     + GV+++  +     +P DGKT+GE++ R   V   Y+K+P+ TEE  
Sbjct: 338 ELRAKQGR---PVPGVELRIVDDEGNELPWDGKTVGELVVRGPWVTGSYYKDPEKTEELT 394

Query: 430 RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKV 489
           R+GW+ TGD+AV + DGY+Q+ DR KD+I SG E ISS+E+E  L+++P V EAAVVG  
Sbjct: 395 RDGWFRTGDVAVIDEDGYIQITDRAKDVIKSGGEWISSVELENALMAHPAVAEAAVVGVP 454

Query: 490 DDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFF-EDIPVNSTGKVQKFV 548
            ++  E P+A V LK G + + EEL+     ++    +P  + F ++IP  S GK  K  
Sbjct: 455 HEKWGERPLAVVVLKPGAKVTEEELLEHLAKKVAKWWLPDRVVFVDEIPKTSVGKFDKKA 514

Query: 549 LR 550
           LR
Sbjct: 515 LR 516

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  345 bits (887), Expect = e-113
 Identities = 163/556 (29%), Positives = 236/556 (42%), Gaps = 53/556 (9%)

Query: 12  SASANNVPLTPIDFLERAAHVYGDATSIIYG--TVRFSWRQTHQICLKLASALAQLKISR 69
                   LT    LERAA    D  ++I+     R ++R+  +   +LA+AL  L +  
Sbjct: 3   RLMRMTAELTLASLLERAARRNPDRPALIFLGRGGRLTYRELDRRANRLAAALQALGVKP 62

Query: 70  GDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVE 129
           GD VA + PN P       A   AGAV   LN RL    LA IL    AK++    +F  
Sbjct: 63  GDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAA 122

Query: 130 VVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFE 189
           +++   + L                                    +    L   G     
Sbjct: 123 LLEAVAEALPVVLVVLLVGDADDRL-------------------PITLEALAAEGPGPDA 163

Query: 190 MMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLN--SLAQISRCDVRDMPVFLWTLDM 247
             +P    D   + YTSG+TG PKGVV +HR    N   +A      +    V L  L +
Sbjct: 164 DARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPL 223

Query: 248 FRCNGWCCTWAMAAVGGINVCI---RTVSAKIIFDSILIHKVTHLCGQPRILNMIANASA 304
           F   G         +GG  + +        + +   I  +KVT L G P  L  + +   
Sbjct: 224 FHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPE 283

Query: 305 SDQNQLQRKVIIVIAG--VLPTIEVLEQVAN-FG-FNIRHAYGMTEVLGPAIVRQWKPEG 360
            D + L   + +V++G   LP  E+LE+    FG   I   YG+TE   P +      + 
Sbjct: 284 KDDDDLSSSLRLVLSGGAPLP-PELLERFEERFGPIAILEGYGLTE-TSPVVTINPPDDL 341

Query: 361 ESSALDHEHEMTKHREGLNNLLIQGVDVK--QQNTMKSVPHDGKTLGEVMFRANTVMLGY 418
            +            + G     + GV+V+    +  + +P     +GE+  R   VM GY
Sbjct: 342 LA------------KPGSVGRPLPGVEVRIVDPDGGEVLP---GEVGEIWVRGPNVMKGY 386

Query: 419 FKNPKATEEAFRN-GWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSN 477
           +  P+AT EAF   GW  TGDL   + DGY+ +  R KD+IISG E I   E+EAVL  +
Sbjct: 387 WNRPEATAEAFDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEH 446

Query: 478 PKVLEAAVVGKVDDQLKEVPVAFVKLKEGR--EASPEELVTFCGDELPSCMVPRAIFF-E 534
           P V EAAVVG  D++  E  VA V LK G   E + EEL  F    L    VPR + F +
Sbjct: 447 PAVAEAAVVGVPDERWGERVVAVVVLKPGGDAELTAEELRAFLRKRLALYKVPRIVVFVD 506

Query: 535 DIPVNSTGKVQKFVLR 550
           ++P  ++GK+ +  LR
Sbjct: 507 ELPRTASGKIDRRALR 522

Length = 534

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  260 bits (666), Expect = 2e-81
 Identities = 118/451 (26%), Positives = 182/451 (40%), Gaps = 51/451 (11%)

Query: 47  SWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDS 106
           ++R+  +   +LA+AL  L +  GD VA + PN P       AV  AGA    L+  L +
Sbjct: 1   TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60

Query: 107 ATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSV 166
             LA IL   EAK++  D + +  +   L  L                           +
Sbjct: 61  ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALI--------------------I 100

Query: 167 ANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNS 226
             +   G    +D L  G +      P    D   + YTSG+TG PKGV+ +HR     +
Sbjct: 101 VGDDGEGLDLLDDELLAGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALA 160

Query: 227 LAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCIR--TVSAKIIFDSILIH 284
                R  +      L  L +         +     GG  V +   T+    + D I  +
Sbjct: 161 AGLAERFGLTPGDRVLLLLPLHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKY 220

Query: 285 KVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVAN-FGF-NIRHAY 342
           KVT L G P +L ++  A    +  L    +++  G     E+L ++   FG   + + Y
Sbjct: 221 KVTVLYGVPTLLRLLLKAPEEKKYDLSSLRLVLSGGEPLPPELLRRLRERFGGVPLVNGY 280

Query: 343 GMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGK 402
           G TE    A               +     + + G     + GV+V      K +  +G+
Sbjct: 281 GPTETTVVATA-------------NLPGDPEVKPGSIGRPLPGVEV------KVLDEEGE 321

Query: 403 TL-----GEVMFRANTVMLGYFKNPKATEEAF-RNGW--YHTGDLAVRNPDGYVQMKDRR 454
            +     GE+  R   V  GY  +P+ T E F  +GW  Y TGDL   + DGY+++  R+
Sbjct: 322 PVPPGEVGELCIRGPGVARGYLNDPELTAERFVEDGWGMYRTGDLGRWDEDGYLEILGRK 381

Query: 455 KDIIISGAEIISSLEVEAVLLSNPKVLEAAV 485
            D +    E I   E+EAVLL +P V EAAV
Sbjct: 382 DDQVKIRGERIEPGEIEAVLLEHPGVAEAAV 412

Length = 412

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  243 bits (622), Expect = 1e-75
 Identities = 123/365 (33%), Positives = 179/365 (49%), Gaps = 36/365 (9%)

Query: 198 DPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTW 257
           DP  + YTSG+TG PKGV+ +HR    N++  ++  D+    V+L    ++   G     
Sbjct: 2   DPALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSPGDVYLLAAPLYHAAGGLFLL 61

Query: 258 AMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQR-KVII 316
              A GG  V +     + + D I  H+VTH    P +   +       +  L   ++II
Sbjct: 62  PALAAGGTVVLMPKFDPEAVLDLIERHRVTHTFLVPTMFQRLLRLPDFARYDLSSLRLII 121

Query: 317 VIAGVLPTIEVLEQV-ANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTK-- 373
             A  +P  E+   +   FG      YGMTE  GP              L  E  + K  
Sbjct: 122 YGAAPMPA-ELKRAMIEWFGPVFVQGYGMTET-GPTTT----------LLSPEDWLRKLG 169

Query: 374 --HREGLNNLLIQGVDVKQQNTMKSVPHDGKTL-----GEVMFRANTVMLGYFKNPKATE 426
              R         GV+V+       V  DG+ L     GE++ R   VM GY+  P+AT 
Sbjct: 170 SVGRPVP------GVEVR------IVDEDGRELPPGEVGEIVVRGPAVMAGYWNRPEATA 217

Query: 427 EAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVV 486
           EA R+GW HTGDL   + DGY+ + DR+KD+IISG E I   EVE VLL++P V + AV+
Sbjct: 218 EALRDGWLHTGDLGYLDEDGYLYIVDRKKDMIISGGENIYPAEVENVLLAHPAVADVAVI 277

Query: 487 GKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFF-EDIPVNSTGKVQ 545
           G  D++  E  VA V L+ G     EEL+ FC + L    VP+++ F +++P N++GK+ 
Sbjct: 278 GVPDEEWGEAVVAVVVLRPGATLDAEELIAFCRERLAGYKVPKSVEFVDELPRNASGKIL 337

Query: 546 KFVLR 550
           K  LR
Sbjct: 338 KRELR 342

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  241 bits (617), Expect = 6e-75
 Identities = 117/364 (32%), Positives = 170/364 (46%), Gaps = 30/364 (8%)

Query: 198 DPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTW 257
           DP  + YTSG+TG PKG + +HR    N  +   R  + +    L  + +F   G     
Sbjct: 3   DPALIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGLTEGDRTLVPVPLFHVFGLVLGV 62

Query: 258 AMA-AVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVII 316
             +   G   V +           I   ++T L G P +   +      D+  L      
Sbjct: 63  LASLTAGATLVLMEKFDPGAALRLIERERITALHGVPTMFIALLEHPDFDKFDLSSLRTG 122

Query: 317 VIAGVLPTIEVLEQVANFGFNIRH---AYGMTEVLGPAIVRQWKPEGESSALDHEHEMTK 373
           +  G     E++ ++    F +      YGMTE  G             ++ D  +E   
Sbjct: 123 ISGGAPVPPELVRRIREE-FPMAEITTGYGMTETSGVGTQ---------TSGDDPYE--- 169

Query: 374 HREGLNNLLIQGVDVKQQNTMKSVPHDGKTL-----GEVMFRANTVMLGYFKNPKATEEA 428
            R G     + GV+V      K V  DG  +     GE+  R  +VM GY+ +P+AT EA
Sbjct: 170 DRPGTVGRPLPGVEV------KIVDPDGGEVPPGEVGEICVRGYSVMKGYYNDPEATAEA 223

Query: 429 -FRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVG 487
              +GW HTGDL   + DGY+++  R KD+II G E I   E+E  LL++P V EAAVVG
Sbjct: 224 IDADGWLHTGDLGYMDEDGYLRIVGRIKDMIIRGGENIYPAEIEEALLTHPAVAEAAVVG 283

Query: 488 KVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFF-EDIPVNSTGKVQK 546
             D++L EV  AFV LK G   + EEL+ FC   L    VPR + F +++P  ++GK+QK
Sbjct: 284 VPDERLGEVVAAFVVLKPGATLTEEELIAFCRGRLARFKVPRYVRFVDELPRTASGKIQK 343

Query: 547 FVLR 550
           F LR
Sbjct: 344 FKLR 347

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score =  243 bits (622), Expect = 1e-73
 Identities = 156/542 (28%), Positives = 247/542 (45%), Gaps = 57/542 (10%)

Query: 24  DFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPAL 83
           D L R+A  Y D T++++G   +++ +      ++A+AL  L + +GD VAA+  N  A 
Sbjct: 15  DILRRSARRYPDKTALVFGDRSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAY 74

Query: 84  YKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHK 143
             L  A   AGAV   +N  L    LA IL    A+   VD       + AL +L     
Sbjct: 75  ALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALL----P 130

Query: 144 CDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVN 203
            D   L + +   +             P G LD+ D  E G +  E      + D   + 
Sbjct: 131 VDTLILSLVLGGREA------------PGGWLDFADWAEAG-SVAEPDVELADDDLAQIL 177

Query: 204 YTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAM---- 259
           YTSG+   PKG + +HR      ++ I   D+    + L  L ++ C        +    
Sbjct: 178 YTSGTESLPKGAMLTHRALIAEYVSCIVAGDMSADDIPLHALPLYHCA------QLDVFL 231

Query: 260 ---AAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQ--RKV 314
                VG  NV +     ++I  +I   ++T     P +   +      D   L   RK 
Sbjct: 232 GPYLYVGATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPDFDTRDLSSLRK- 290

Query: 315 IIVIAGVLPTIEVLEQVANFGFNIR--HAYGMTEVLGP-AIVRQWKPEGESSALDHEHEM 371
               A ++P +EVL+++      +R  + YG TE+  P A V    PE      +H    
Sbjct: 291 GYYGASIMP-VEVLKELRERLPGLRFYNCYGQTEI-APLATV--LGPE------EHLRRP 340

Query: 372 -TKHREGLNNLLIQGVDVKQQNT-MKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAF 429
            +  R  LN      V+ +  +     V   G  +GE++ R+  +MLGY+ +P+ T EAF
Sbjct: 341 GSAGRPVLN------VETRVVDDDGNDVA-PG-EVGEIVHRSPQLMLGYWDDPEKTAEAF 392

Query: 430 RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKV 489
           R GW+H+GDL V + +GY+ + DR+KD+I +G E ++S EVE  L ++P V E AV+G  
Sbjct: 393 RGGWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLP 452

Query: 490 DDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFF-EDIPVNSTGKVQKFV 548
           D +  E   A V  K G   + +EL+  C   L    VP+ + F +++P N +GK+ K  
Sbjct: 453 DPKWIEAVTAVVVPKAGATVTEDELIAHCRARLAGFKVPKRVIFVDELPRNPSGKILKRE 512

Query: 549 LR 550
           LR
Sbjct: 513 LR 514

Length = 523

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  241 bits (618), Expect = 2e-73
 Identities = 147/539 (27%), Positives = 221/539 (41%), Gaps = 85/539 (15%)

Query: 24  DFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPAL 83
           D LERAA  + D  ++ +   + ++ +  ++  + A+ L QL + +GD VA M PN P  
Sbjct: 3   DLLERAARRFPDRPALTFFGRKLTYAELDELSDRFAAYLQQLGVKKGDRVALMLPNCPQF 62

Query: 84  YKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHK 143
              +F +  AGAV+  +N       L   L    AK++ V   F                
Sbjct: 63  PIAYFGILKAGAVVVPVNPLYTPRELEHQLNDSGAKVLIVAISF---------------- 106

Query: 144 CDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVN 203
                                              D L  G      ++ + + D   + 
Sbjct: 107 ----------------------------------EDALASGAPLPLPVELSPD-DLAVLQ 131

Query: 204 YTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMP---VFLWTLDMFRCNGW-CCTWAM 259
           YT G+TG PKG + +HR    N + QI+            FL  L +F   G        
Sbjct: 132 YTGGTTGVPKGAMLTHRNLVAN-VQQIAAWVKDLREGEDRFLTALPLFHIFGLTVNMLLG 190

Query: 260 AAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQR-KVIIVI 318
             +G  NV +       +   I  ++ T   G P + N + N     +      ++ I  
Sbjct: 191 LRLGATNVLVPNFRPINVLKEIKRYRFTIFPGVPTLYNALLNHPEFKKYDFSSLRLCISG 250

Query: 319 AGVLPTIEVLEQ-VANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREG 377
              LP  EV E+     G  +   YG+TE   P        +GE             + G
Sbjct: 251 GAPLPV-EVAERFEEKTGAPLVEGYGLTE-TSPVTTVN-PLDGER------------KPG 295

Query: 378 LNNLLIQGVDVKQQNTMKSVPHDGKTL-----GEVMFRANTVMLGYFKNPKATEEAFRNG 432
              L + G +VK       V  +G  L     GE++ R   VM GY+  P+ T E   +G
Sbjct: 296 SIGLPLPGTEVK------IVDDEGNELPPGEVGELVVRGPQVMKGYWNRPEETAEVLTDG 349

Query: 433 WYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQ 492
           W  TGD+   + DGY  + DR+KD+II G   +   E+E VL S+P VLEAAVVG  D  
Sbjct: 350 WLRTGDIGYMDEDGYFYIVDRKKDMIIVGGFNVYPREIEEVLYSHPAVLEAAVVGVPDPY 409

Query: 493 LKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAI-FFEDIPVNSTGKVQKFVLR 550
             E   AFV LKEG   + EEL+ FC + L +  VPR + F +++P ++ GK+ +  LR
Sbjct: 410 RGEAVKAFVVLKEGASLTEEELIAFCRERLAAYKVPRQVEFRDELPKSAVGKILRRELR 468

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score =  238 bits (609), Expect = 9e-72
 Identities = 161/556 (28%), Positives = 248/556 (44%), Gaps = 62/556 (11%)

Query: 16  NNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAA 75
           +N  +T  + L RAA  +GD  + ++G  R ++ + +    + A+ALA L I +GD VA 
Sbjct: 1   DNEWMTLPELLARAARRFGDKEAYVFGDQRLTYAELNARVRRAAAALAALGIGKGDRVAI 60

Query: 76  MAPNIP----ALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVV 131
            APN P    A          AGAV+  LNTR  +   A IL + +AK +FV   F+ V 
Sbjct: 61  WAPNSPHWVIAALGAL----KAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVD 116

Query: 132 QNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMM 191
            +A   L         P L  +  C+  +       +        + D L  G       
Sbjct: 117 YSATTRL---------PALEHVVICETEED------DPHTEKMKTFTDFLAAGDPAERA- 160

Query: 192 QPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCN 251
                 D   + +TSG+TG PKG + +HR    N+        + +   +L     F   
Sbjct: 161 PEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFH-- 218

Query: 252 GWCCTWAMAAVGGINVCI---------RTVSAKIIFDSILIHKVTHLCGQPRILNMIANA 302
                +   A  G+N  +                +F  I   ++T L G P + N +   
Sbjct: 219 ----VFGYKA--GVNAPLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQH 272

Query: 303 SASDQNQLQRKVIIVIAG--VLPTIEVLEQV-ANFGFN-IRHAYGMTEVLGPAIVRQWKP 358
                  L   + + + G   +P + +LE+  +  G + +   YG++E  G         
Sbjct: 273 PDRSAEDL-SSLRLAVTGAASMP-VALLERFESELGVDIVLTGYGLSEASGVTTF----- 325

Query: 359 EGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGY 418
               + LD + +      G     I GV+ K  N +      G+  GE++ R   VM GY
Sbjct: 326 ----NRLDDDRKTVAGTIGTA---IAGVENKIVNELGEEVPVGEV-GELLVRGPNVMKGY 377

Query: 419 FKNPKATEEAFRN-GWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSN 477
           + +P+AT  A    GW HTGDL   + +GY+ + DR+KD+ I G   +   EVE VL  +
Sbjct: 378 YDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEH 437

Query: 478 PKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAI-FFEDI 536
           P V EAAV+G  D++L EV  A+V LK G E + EEL+ +C + L    VPR+I F +++
Sbjct: 438 PAVAEAAVIGVPDERLGEVGKAYVVLKPGAELTEEELIAYCREHLAKYKVPRSIEFLDEL 497

Query: 537 PVNSTGKVQKFVLRGK 552
           P N+TGKV K  LR K
Sbjct: 498 PKNATGKVLKRALREK 513

Length = 513

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  226 bits (578), Expect = 2e-69
 Identities = 115/360 (31%), Positives = 162/360 (45%), Gaps = 34/360 (9%)

Query: 198 DPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNG-WCCT 256
           DP  + YTSG+TG PKGVV SHR    N+ A      + +  V L  L +F   G     
Sbjct: 1   DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDVLLSVLPLFHVVGGGSGL 60

Query: 257 WAMAAVGGINVCIRT--VSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQR-K 313
                 GG  V +           + I  ++VT L G P + + +A A+      L   +
Sbjct: 61  LGALLAGG-TVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDALAKAAEDRGYDLSSLR 119

Query: 314 VIIVIAGVLPTIEVLEQVAN-FGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMT 372
           ++I     L   E+LE+     G  I   YG+TE                        + 
Sbjct: 120 LLISGGEPLS-PELLERFEERPGAPILEGYGLTETSVVTSTNPDSELK------KPGTVG 172

Query: 373 KHREGLNNLLIQGVDVKQQNTMKSVPHDGKTL-----GEVMFRANTVMLGYFKN-PKATE 426
           +         + GV+V+       V  +GK L     GE++ R   VM GY+ N P+ T 
Sbjct: 173 R--------PVPGVEVR------VVDEEGKPLPPGEVGELVVRGPWVMKGYWNNPPETTA 218

Query: 427 EAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVV 486
            A  +GWY TGDL   + +GY+ +  R KD+I  G E +   EVE+VLL +P V EAAVV
Sbjct: 219 AATEDGWYRTGDLGYLDEEGYLYITGRSKDLIKVGGENVYPAEVESVLLQHPAVAEAAVV 278

Query: 487 GKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQ 545
           G  D+   E  VAFV L+ G +A  EEL     + L    VPR I F D +P  ++GK+ 
Sbjct: 279 GVPDEDRGERIVAFVVLRPGADALAEELKAHLRERLAPYKVPRVIEFVDELPKTASGKID 338

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  221 bits (566), Expect = 2e-66
 Identities = 117/365 (32%), Positives = 166/365 (45%), Gaps = 35/365 (9%)

Query: 197 CDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCT 256
            D  ++ YTSG+TG PKGV+ +H      +        +R   V L  L +F  N    +
Sbjct: 81  VDTAAILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGLRPDDVLLTPLPLFHINAQAYS 140

Query: 257 -WAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQ---NQLQR 312
            +A   VG   V +   SA   +D +  H  T       +  ++     S     + L R
Sbjct: 141 VYAALLVGATLVLLPRFSASRFWDQVRKHGATVFNLLGAMAAILMKQPPSPDDRDHPL-R 199

Query: 313 KVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMT 372
            V    A +   I        FG  +   YGMTE   P I          +  D     +
Sbjct: 200 FV--FGAPLPAAIWP-AFEERFGVKLVEGYGMTETGVPII----------APGDPAPPGS 246

Query: 373 KHREGLNNLLIQGVDVK--QQNTMKSVPHDGKTLGEVMFRAN---TVMLGYFKNPKATEE 427
             R         GV+V+   ++  + VP  G  +GE++ R      +  GY+  P+AT +
Sbjct: 247 CGR------PRPGVEVRIVDEDG-REVP-PG-EVGELVVRPRRPWAMFKGYYGMPEATAK 297

Query: 428 AFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVG 487
           A+RNGW+HTGD   R+ DG++   DR+KD I    E ISS EVEA +L++P V EAAVV 
Sbjct: 298 AWRNGWFHTGDRGRRDEDGFLYFVDRKKDAIRRRGENISSYEVEAAILAHPAVAEAAVVA 357

Query: 488 KVDDQ-LKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAI-FFEDIPVNSTGKVQ 545
              +    EV    V L+ G    PE L+ FC D LP  MVPR I F +++P   T K+Q
Sbjct: 358 VPSELGEDEVKAVVV-LRPGETLDPEALLEFCRDRLPYFMVPRYIEFVDELPKTPTEKIQ 416

Query: 546 KFVLR 550
           K  LR
Sbjct: 417 KAELR 421

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score =  223 bits (570), Expect = 6e-66
 Identities = 151/551 (27%), Positives = 251/551 (45%), Gaps = 49/551 (8%)

Query: 19  PLTPIDFLERAAHVYGD---ATSIIYG-TVRFSWRQTHQICLKLASALAQLKISRGDIVA 74
           PL     ++ AA ++G+    T  + G  VR ++ Q H   LK++ AL +  I  GD VA
Sbjct: 9   PLLCHRIIDHAARIHGNREVVTRSVEGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVA 68

Query: 75  AMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNA 134
            +A N     +  + +   GA+   +N RL    +A I+   E +++  D  FV +++  
Sbjct: 69  TIAWNTWRHLEAWYGIMGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKI 128

Query: 135 LDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFE--MMQ 192
            D      K       V + +  H  P T          ++ Y + +     DF      
Sbjct: 129 AD------KLPSVERYVVLTDAAH-MPQT-----TLK-NAVAYEEWIAEADGDFAWKTFD 175

Query: 193 PNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLA--QISRCDVRDMPVFLWTLDMFRC 250
            N       + YTSG+TGDPKGV+YSHR   L++L                L  + +F  
Sbjct: 176 ENTAA---GMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHA 232

Query: 251 NGWCCTWAMAAVGGINVCIRTVSAKI----IFDSILIHKVTHLCGQPRILNMIANASASD 306
           N W   ++  ++G   V      AK+    +++ +   KVT   G P +  M+      +
Sbjct: 233 NSWGIAFSAPSMGTKLV---MPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKE 289

Query: 307 QNQLQRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALD 366
             +L    ++V  G      +++   + G  +RHA+GMTE+          P G  +AL 
Sbjct: 290 GLKLPHLKMVVCGGSAMPRSMIKAFEDMGVEVRHAWGMTEM---------SPLGTLAALK 340

Query: 367 HEHEMTKHREGLNNLLIQG-----VDVK-QQNTMKSVPHDGKTLGEVMFRANTVMLGYFK 420
                      L+ L  QG     V++K   +  K +P DGKT G +  R   V   Y++
Sbjct: 341 PPFSKLPGDARLDVLQKQGYPPFGVEMKITDDAGKELPWDGKTFGRLKVRGPAVAAAYYR 400

Query: 421 NPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKV 480
                 +   +G++ TGD+A  +  GY+++ DR KD+I SG E ISS+++E + + +PKV
Sbjct: 401 VDGEILDD--DGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKV 458

Query: 481 LEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAI-FFEDIPVN 539
            EAAV+G    +  E P+  V+LK G  A+ EE++ +   ++    +P  + F + IP  
Sbjct: 459 AEAAVIGVYHPKWDERPLLIVQLKPGETATREEILKYMDGKIAKWWMPDDVAFVDAIPHT 518

Query: 540 STGKVQKFVLR 550
           +TGK+ K  LR
Sbjct: 519 ATGKILKTALR 529

Length = 542

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score =  222 bits (567), Expect = 2e-65
 Identities = 160/556 (28%), Positives = 251/556 (45%), Gaps = 56/556 (10%)

Query: 17  NVPLTPIDFLERAAHVYGDATSIIYGTV-----RFSWRQTHQICLKLASALAQLKISRGD 71
           ++PL     +  AA   GD T I+   V     R+++R   +   +LA ALA L +  GD
Sbjct: 7   DMPLLISSLIAHAARHAGD-TEIVSRRVEGDIHRYTYRDCERRAKQLAQALAALGVEPGD 65

Query: 72  IVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVV 131
            V  +A N     + ++ V  +GAV   +N RL    +A I+   E + +  D  F+ +V
Sbjct: 66  RVGTLAWNGYRHLEAYYGVSGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLV 125

Query: 132 QNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMM 191
                 L+P  +C      V + +  H    +  +        L Y  L+     D++  
Sbjct: 126 DA----LAP--QCPNVKGWVAMTDAAHLPAGSTPL--------LCYETLVGAQDGDYDWP 171

Query: 192 QPNHECDPISVNYTSGSTGDPKGVVYSHRG----AYLNSLAQISRCDVRD--MPVFLWTL 245
           + + E    S+ YTSG+TG+PKG +YSHR     AY  +L        RD  +PV    +
Sbjct: 172 RFD-ENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPV----V 226

Query: 246 DMFRCNGWCCTWAMAAVGGINVCI-RTVSAKIIFDSILIHKVTHLCGQPRILNMIANASA 304
            MF  N W   ++    G   V     +  K +++ I   +VT   G P +   + N   
Sbjct: 227 PMFHVNAWGLPYSAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMR 286

Query: 305 SDQ---NQLQRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGE 361
                 + L+R VI   A     I   E    +G  + HA+GMTE+          P G 
Sbjct: 287 EAGLRFSTLRRTVIGGSACPPAMIRTFED--EYGVEVIHAWGMTEM---------SPLGT 335

Query: 362 SSALDHEHEMTKHREGLNNLLIQG-----VDVK-QQNTMKSVPHDGKTLGEVMFRANTVM 415
              L  +H      E    L  QG     VD+K   +  + +P DGK  G++  R   V+
Sbjct: 336 LCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVGDDGRELPWDGKAFGDLQVRGPWVI 395

Query: 416 LGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLL 475
             YF+          +GW+ TGD+A  + DG++Q+ DR KD+I SG E ISS+++E V +
Sbjct: 396 DRYFRG---DASPLVDGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAV 452

Query: 476 SNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPR-AIFFE 534
           ++P V EAA +     +  E P+  V  + G E + EEL+ F   ++    +P   +F +
Sbjct: 453 AHPAVAEAACIACAHPKWDERPLLVVVKRPGAEVTREELLAFYEGKVAKWWIPDDVVFVD 512

Query: 535 DIPVNSTGKVQKFVLR 550
            IP  +TGK+QK  LR
Sbjct: 513 AIPHTATGKLQKLKLR 528

Length = 539

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score =  217 bits (555), Expect = 7e-64
 Identities = 141/569 (24%), Positives = 222/569 (39%), Gaps = 95/569 (16%)

Query: 17  NVPLTPIDFLERAAHVYGDATSIIY-----GTVRFSWRQTHQICLKLASALAQLKISRGD 71
           N+ L  +D    A     D T+II+          ++    +   +LA+AL  L   +GD
Sbjct: 9   NLALNALDRHLEADR--PDDTAIIFDGEDGLFRELTYGDLRREVARLANALKDLGGVKGD 66

Query: 72  IVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFV-DYQFVEV 130
            VA   PN P       A    GA+ + ++  L +  +A  +  L  K++   D  F   
Sbjct: 67  RVAIYMPNSPEAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNG 126

Query: 131 VQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFE- 189
            + AL         D     V +                 P   L Y++ +E     FE 
Sbjct: 127 KEIAL-----LEDADAVLSSVVV----------------VPRLGLWYDEAVEKASEKFEF 165

Query: 190 -MMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISR--CDVRDMPVFLWTLD 246
             +  +   DP+ + YTSG+TG PKG+V+SH G YL      ++   D+     F  + D
Sbjct: 166 EPLPAD---DPLFLLYTSGTTGKPKGIVHSHGG-YLVEHRLTAKFHGDLLPGDRFWNSSD 221

Query: 247 MFRCNGWCCTWAMAAVGGINVCIRTV---------SAKIIFDSILIHKVTHLCGQPRILN 297
                GW       +V        T          S + +++++  +KVT     P  L 
Sbjct: 222 P----GWI-YGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLR 276

Query: 298 MIANASASDQNQLQRKVIIVIAG-VLP--TIEVLEQVANFGFNIRHAYGMTEVLGPAIVR 354
            +      +   L    ++  AG  L     E        G  I   YG TE     I  
Sbjct: 277 RLMKLGLGEPYDLSSLRVLGSAGEPLNPEAFEWFYSA--LGVWILDIYGQTETGMGFIAG 334

Query: 355 QWKPEGESS----------ALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTL 404
           +   +  SS           +D E        G   L+++             P  G   
Sbjct: 335 RPPVKNGSSGLPLPGYAVRRVDDEGNPVPPGVG--ELVVRL------------PWPG--- 377

Query: 405 GEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEI 464
              M         Y+ +P+  +EA+   WY TGD A R+ DGY  +  R  D+I    + 
Sbjct: 378 ---MAL------TYWNDPERYKEAYFGRWYRTGDWAERDEDGYFWLHGRSDDVIKVSGKR 428

Query: 465 ISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASP--EELVTFCGDEL 522
           I  LE+E+VLL++P V EAAVVG  D    ++ +AFV L  G E +   EE+       +
Sbjct: 429 IGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVEPNELAEEIRRHVARNI 488

Query: 523 PSCMVPRAIFF-EDIPVNSTGKVQKFVLR 550
               +PR I F +++P  ++GK+Q+ +LR
Sbjct: 489 GPHAIPRKIRFVDELPKTASGKIQRRLLR 517

Length = 528

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  213 bits (544), Expect = 1e-62
 Identities = 135/539 (25%), Positives = 218/539 (40%), Gaps = 93/539 (17%)

Query: 42  GTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALN 101
                ++    +  L+LA  L +L + +GD+VA ++PN      +      AG ++SA N
Sbjct: 7   TGTELTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAAN 66

Query: 102 TRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHK--CDKAPLLVTIPECDHY 159
                  LA  L+  + K+IF D   ++ V+ A   L P  +     +     +   D  
Sbjct: 67  PSYTPDELAHQLKISKPKLIFCDPDELDKVKEAAKELGPVVRIIVLDSAPDGVLRIEDLL 126

Query: 160 QPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSH 219
           +P   +     P+  +D  D                  D  ++ Y+SG+TG PKGV+ SH
Sbjct: 127 EPRLGAEDEFRPTPLIDGKD------------------DTAALLYSSGTTGLPKGVMLSH 168

Query: 220 RGAYLNSLAQIS---RCDVRDMPVFLWTLDMFRCNGWCCTWAMAAVGGIN--VCIRTVSA 274
           +    N                 V L  L  +         A      +   +C  TV  
Sbjct: 169 KNIIANLSQVQDTLKGNPDSSNDVVLTFLPFY--------HAYGLTTTLASLLCGATV-- 218

Query: 275 KII---FDSILI------HKVTHLCGQPRILNMIANASASDQNQLQR-KVIIVIAGVLPT 324
            II   FDS         +KVT L   P I   +A +   D+  L   +VI   A  L +
Sbjct: 219 -IIMPKFDSETFLKLIEKYKVTSLFLVPPIAVALAKSPLVDKYDLSSLRVIFSGAAPL-S 276

Query: 325 IEVLEQVAN-FGF-NIRHAYGMTEVLGPAIVRQW-KPEGESSALDHEHEMTKHREGLNNL 381
            E+ E++   F    I+  YGMTE      +      +  S              G    
Sbjct: 277 KELQEELRKRFPNTTIKQGYGMTETGPATTLTPPGDEKPGSV-------------GRLVP 323

Query: 382 LIQGVDVKQQNTMKSVPHDGKTL------GEVMFRANTVMLGYFKNPKATEEAF-RNGWY 434
            ++          K V  DG         GE+  +   +M GY  NP+AT+E    +GW 
Sbjct: 324 NVE---------AKIVDEDGGKSLGPNERGELCVKGPQIMKGYLNNPEATKETIDEDGWL 374

Query: 435 HTGDLAVRNPDGYVQMKDRRKDII------ISGAEIISSLEVEAVLLSNPKVLEAAVVGK 488
           HTGD+   + DG   + DR+K++I      +  AE+      EAVLL +PKV +AAV+G 
Sbjct: 375 HTGDIGYFDEDGNFYIVDRKKELIKYKGYQVPPAEL------EAVLLEHPKVADAAVIGI 428

Query: 489 VDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSC--MVPRAIFFEDIPVNSTGKVQ 545
            D+   E+P A+V LK G + + +E+  +   ++     +    +F ++IP + +GK+ 
Sbjct: 429 PDEVAGELPRAYVVLKPGSKLTEQEVKDYVAKKVAKYKQLRGGVVFVDEIPKSPSGKIL 487

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score =  204 bits (521), Expect = 8e-59
 Identities = 160/567 (28%), Positives = 240/567 (42%), Gaps = 81/567 (14%)

Query: 24  DFLERAAHVYGDATSIIYG--TVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIP 81
           D  +     + D  +++     +R++WRQ      +LA  L  L +  GD V   APN  
Sbjct: 22  DAFDATVARFPDREALVVRHQALRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCA 81

Query: 82  ALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFV-------DYQ--FVEVVQ 132
                 FA    GA+L  +N    ++ L   L Q   + +         DY     E++ 
Sbjct: 82  EWLLTQFATARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLP 141

Query: 133 NALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKA----DF 188
              +       C++ P L  +           S+A   P G L +++L   G+       
Sbjct: 142 GLAEGQPGALACERLPELRGV----------VSLAPAPPPGFLAWHELQARGETVSREAL 191

Query: 189 EMMQPNHEC-DPISVNYTSGSTGDPKGVVYSH-----RGAYLNSLAQISRCDVRDMPVFL 242
              Q + +  DPI++ YTSG+TG PKG   SH      G ++     ++  D   +PV L
Sbjct: 192 AERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLTEHDRLCVPVPL 251

Query: 243 WTLDMFRCNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILI------HKVTHLCGQPRIL 296
                + C G      +A +G + V    V     FD +         + T L G P + 
Sbjct: 252 -----YHCFGM----VLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMF 302

Query: 297 NMIANASASDQNQLQ----RKVIIVIAGVLPTIEVLEQVAN--FGFNIRHAYGMTEVLGP 350
             IA      +        R  I+  AG    IEV+ +V +      ++ AYGMTE    
Sbjct: 303 --IAELDHPQRGNFDLSSLRTGIM--AGAPCPIEVMRRVMDEMHMAEVQIAYGMTE---- 354

Query: 351 AIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTL-----G 405
                      +S +  +   T   + L   +      +    +K V  DG T+     G
Sbjct: 355 -----------TSPVSLQ---TTAADDLERRVETVGRTQPHLEVKVVDPDGATVPRGEIG 400

Query: 406 EVMFRANTVMLGYFKNPKATEEAF-RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEI 464
           E+  R  +VM GY+ NP+AT E+   +GW HTGDLA  +  GYV++  R KD+II G E 
Sbjct: 401 ELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGEN 460

Query: 465 ISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPS 524
           I   E+E  L ++P V +  V G  D++  E  VA+V+L  G  AS EEL  FC   +  
Sbjct: 461 IYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPGHAASEEELREFCKARIAH 520

Query: 525 CMVPRAIFFED-IPVNSTGKVQKFVLR 550
             VPR   F D  P+  TGKVQKF +R
Sbjct: 521 FKVPRYFRFVDEFPMTVTGKVQKFRMR 547

Length = 558

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score =  193 bits (492), Expect = 1e-55
 Identities = 119/502 (23%), Positives = 207/502 (41%), Gaps = 71/502 (14%)

Query: 47  SWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDS 106
           +W+        LA AL    I  G  VA +  N   +  L  A  + GA ++ LNTRL  
Sbjct: 1   TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60

Query: 107 ATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSV 166
               + L  L+ +++  D    E    A  +                   +       S+
Sbjct: 61  NERTNQLEDLDVQLLLTDSLLEEKDFQADSL----------------DRIEAAGRYETSL 104

Query: 167 ANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNS 226
           +                  A F M Q        ++ +TSG+TG PK V ++ R  Y ++
Sbjct: 105 S------------------ASFNMDQI------ATLMFTSGTTGKPKAVPHTFRNHYASA 140

Query: 227 LAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCIRTVSAKI-IFDSILIHK 285
           +         +   +L +L ++  +G    +     G     +R V     + + I   +
Sbjct: 141 VGSKENLGFTEDDNWLLSLPLYHISGLSILFRWLIEGA---TLRIVDKFNQLLEMIANER 197

Query: 286 VTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMT 345
           VTH+   P  LN + +    ++N L++   I++ G      ++E+   +G  I  +YGMT
Sbjct: 198 VTHISLVPTQLNRLLDEGGHNEN-LRK---ILLGGSAIPAPLIEEAQQYGLPIYLSYGMT 253

Query: 346 EVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLG 405
           E               S       EM   R  +   L  G ++K +        + +  G
Sbjct: 254 ETC-------------SQVTTATPEMLHARPDVGRPL-AGREIKIKVD------NKEGHG 293

Query: 406 EVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEII 465
           E+M +   +M GY    + T    + GW++TGD+   + +G++ +  RR D+IISG E I
Sbjct: 294 EIMVKGANLMKGYLYQGELTPAFEQQGWFNTGDIGELDGEGFLYVLGRRDDLIISGGENI 353

Query: 466 SSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSC 525
              E+E VL  +P + EA VV K D +  +VPVA++  +   + S  +L+ +  ++L   
Sbjct: 354 YPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVSE--SDISQAKLIAYLTEKLAKY 411

Query: 526 MVPRAIFFEDI-PVNSTGKVQK 546
            VP A    D  P N++GK+ +
Sbjct: 412 KVPIAFEKLDELPYNASGKILR 433

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score =  193 bits (493), Expect = 4e-55
 Identities = 134/530 (25%), Positives = 231/530 (43%), Gaps = 60/530 (11%)

Query: 30  AHVYGDATSIIYGTV--RFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLH 87
           A  +GD  ++I        ++ +  ++  +LA+ LA     +GD+V  ++PN      + 
Sbjct: 15  ASEFGDRPALIDAATGRALTYAELERLVRRLAAGLAARGGRKGDVVLLLSPNSLEFPVVF 74

Query: 88  FAVPMAGAVLSALNTRLDSATLASILRQLE---AKIIFVDYQFVEVVQNALDILSPNHKC 144
            AV  AGAV++  N      T A I +Q++   AK+     +  E + +           
Sbjct: 75  LAVLSAGAVVTTANP---LYTPAEIAKQVKDSGAKLAITTSELAEKLASLA--------- 122

Query: 145 DKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNY 204
                +V +   D              S ++D     +  +    ++    + D  ++ Y
Sbjct: 123 --LEPVVLLDSAD------------DGSAAIDDLLFADEPEPPVVVI---KQDDVAALPY 165

Query: 205 TSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMP--VFLWTLDMFRCNGWC-CTWAMAA 261
           +SG+TG  KGV+ +HR    N    ++          V L  L MF   G      A+  
Sbjct: 166 SSGTTGRSKGVMLTHRNLIANVAQLVAGEGPNFDREDVTLCVLPMFHIYGLTVILLALLR 225

Query: 262 VGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGV 321
           +G   V +     +    +I  +KVTHL   P I+  +      D+  L   +  + +G 
Sbjct: 226 LGATVVVMPRFDLEKFLAAIEKYKVTHLPVVPPIVLALVKHPIVDKYDL-SSLKQIGSGA 284

Query: 322 LP-TIEVLEQVAN--FGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGL 378
            P   E+ E       G  +   YGMTE               ++      +  K   G 
Sbjct: 285 APLGKELAEAFRARFPGVELGQGYGMTESSPV-----------TTMCPVPEKDPKP--GS 331

Query: 379 NNLLIQGVDVK--QQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAF-RNGWYH 435
              L+  V+ K     T +S+P   +  GE+  R   VM GY  NP+AT E   ++GW H
Sbjct: 332 VGRLVPNVEAKIVDPETGESLPP-NQP-GELWVRGPQVMKGYLNNPEATAETIDKDGWLH 389

Query: 436 TGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKE 495
           TGDL   + DGY+ + DR K++I      ++  E+EA+LLS+P++ +AAV+   D++  E
Sbjct: 390 TGDLGYFDEDGYLFIVDRLKELIKYKGFQVAPAELEALLLSHPEIADAAVIPYPDEEAGE 449

Query: 496 VPVAFVKLKEGREASPEELVTFCGDEL-PSCMVPRAIFFEDIPVNSTGKV 544
           +P+AFV  + G E S +E++ F   ++ P   V + +F + IP + +GK+
Sbjct: 450 IPMAFVVRQPGSELSEDEVMQFVAKQVAPYKKVRKVVFVDAIPKSPSGKI 499

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score =  188 bits (480), Expect = 1e-53
 Identities = 140/550 (25%), Positives = 230/550 (41%), Gaps = 113/550 (20%)

Query: 26  LERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYK 85
           L++ A +  D T+I +   + ++ + H+  + +A  LA L + +GD VA +  N   +  
Sbjct: 8   LKQRAFLTPDRTAIEFEEKKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMIL 67

Query: 86  LHFAVPMAGAVLSALNTRLDSATLASILRQLE---AKIIFVDYQFVEVVQNALDILSPNH 142
           +  A+   GAV   LNTRL   +   +L QL+    K +  D                  
Sbjct: 68  VIHALQQLGAVAVLLNTRL---SREELLWQLDDAEVKCLITD------------------ 106

Query: 143 KCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISV 202
                         D ++          P  S+ + +L+   K + E+ +     +  ++
Sbjct: 107 --------------DDFEAK------LIPGISVKFAELMNGPKEEAEIQEEFDLDEVATI 146

Query: 203 NYTSGSTGDPKGVV-------YSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCC 255
            YTSG+TG PKGV+       +S  G+ LN                   L +   + W  
Sbjct: 147 MYTSGTTGKPKGVIQTYGNHWWSAVGSALN-------------------LGLTEDDCWLA 187

Query: 256 TWAMAAVGGINVCIRTV------------SAKIIFDSILIHKVTHLCGQP----RILNMI 299
              +  + G+++ +R+V             A+ I   +    VT +        R+L  +
Sbjct: 188 AVPIFHISGLSILMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERL 247

Query: 300 ANASASDQNQLQRKVIIVIAGVLPT-IEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKP 358
              +             ++ G  P    +LEQ    G  +  +YGMTE     IV     
Sbjct: 248 GEGTYPS------SFRCMLLGGGPAPKPLLEQCKEKGIPVYQSYGMTET-ASQIV----- 295

Query: 359 EGESSALDHEHEMTKHREGLNNLLIQGVDV-KQQNTMKSVPHDGKTLGEVMFRANTVMLG 417
                 L  E  +TK       L    + + K    +          GE++ +   V  G
Sbjct: 296 -----TLSPEDALTKLGSAGKPLFPCELKIEKDGVVVPPFEE-----GEIVVKGPNVTKG 345

Query: 418 YFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSN 477
           Y     AT E F++GW+ TGD+   + +G++ + DRR D+IISG E I   E+E VLLS+
Sbjct: 346 YLNREDATRETFQDGWFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSH 405

Query: 478 PKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFF-EDI 536
           P V EA VVG  DD+  +VPVAFV      E + EEL  FC ++L    VP+  +F E++
Sbjct: 406 PGVAEAGVVGVPDDKWGQVPVAFVVK--SGEVTEEELRHFCEEKLAKYKVPKRFYFVEEL 463

Query: 537 PVNSTGKVQK 546
           P N++GK+ +
Sbjct: 464 PRNASGKLLR 473

Length = 483

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score =  187 bits (476), Expect = 2e-52
 Identities = 159/545 (29%), Positives = 229/545 (42%), Gaps = 53/545 (9%)

Query: 26  LERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYK 85
           L R A  Y D   +++G  R+++ +  +     A ALA   + RGD VA M  N      
Sbjct: 27  LARQAERYPDRPLLVFGGTRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLD 86

Query: 86  LHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCD 145
           +       GA+   +NT L    L  ILR   A+++ V+   +  ++ A     P     
Sbjct: 87  VFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLP----- 141

Query: 146 KAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYT 205
             P +  +       P++ SV   + +  L   D      A    +QP    D  ++ YT
Sbjct: 142 -LPAVWLLDA-----PASVSVPAGWSTAPLPPLD----APAPAAAVQPG---DTAAILYT 188

Query: 206 SGSTGDPKGVVYSHRGAY---LNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAMAAV 262
           SG+TG  KGV   H   Y    NS   +   ++    V   TL +F  N     +     
Sbjct: 189 SGTTGPSKGVCCPHAQFYWWGRNSAEDL---EIGADDVLYTTLPLFHTNALNAFFQALLA 245

Query: 263 GGINVCIRTVSAKIIFDSILIHK--VTHLCGQPRILNMIANASASDQNQLQRKVIIVIAG 320
           G   V     SA   + ++  H   VT+L G   +++++ +  A + ++  R V + +  
Sbjct: 246 GATYVLEPRFSASGFWPAVRRHGATVTYLLGA--MVSILLSQPARESDRAHR-VRVALGP 302

Query: 321 VLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNN 380
            +P          FG ++   YG TE      V        S        M +   G   
Sbjct: 303 GVPAALHAAFRERFGVDLLDGYGSTETNFVIAVTHGSQRPGS--------MGRLAPGFE- 353

Query: 381 LLIQGVDVKQQNTMKSVPHDGKTLGEVMFRAN---TVMLGYFKNPKATEEAFRNGWYHTG 437
              + VD   Q      P      GE++ RA+       GYF  P+ T EA+RN W+HTG
Sbjct: 354 --ARVVDEHDQELPDGEP------GELLLRADEPFAFATGYFGMPEKTVEAWRNLWFHTG 405

Query: 438 DLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVP 497
           D  VR+ DG+ +  DR KD I    E ISS EVE VLLS+P V  AAV   V  +L E  
Sbjct: 406 DRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVF-PVPSELGEDE 464

Query: 498 V-AFVKLKEGREASPEELVTFCGDELPSCMVPRAI-FFEDIPVNSTGKVQKFVLRGKVNA 555
           V A V L++G    P  LV  C   L    VPR + F   +P    GKVQKFVLR +   
Sbjct: 465 VMAAVVLRDGTALEPVALVRHCEPRLAYFAVPRYVEFVAALPKTENGKVQKFVLR-EQGV 523

Query: 556 TAVGW 560
           TA  W
Sbjct: 524 TADTW 528

Length = 542

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score =  183 bits (466), Expect = 2e-51
 Identities = 133/525 (25%), Positives = 219/525 (41%), Gaps = 48/525 (9%)

Query: 25  FLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALA-QLKISRGDIVAAMAPNIPAL 83
           ++E+ A+++ D  +II      +++Q H+   K+A+ L  +L + +G+ +A ++ N    
Sbjct: 7   WIEKRAYLHPDRIAIITEEEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEY 66

Query: 84  YKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHK 143
             L FA+     +   LN RL    L   L+     ++FV+  F  +  +   +      
Sbjct: 67  IVLLFAIAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSYVQR- 125

Query: 144 CDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVN 203
                + +T                       D          +F      +E     + 
Sbjct: 126 ----VISIT-----------------SLKEIEDRK------IDNFV---EKNESASFIIC 155

Query: 204 YTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGW-CCTWAMAAV 262
           YTSG+TG PKG V +    + N+L      D+      +  L +F   G     +     
Sbjct: 156 YTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFA 215

Query: 263 GGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVL 322
           GG+ +  R          I  HKVT + G P I   + N S  +   LQ        G  
Sbjct: 216 GGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFETTNLQSVRWFYNGGAP 275

Query: 323 PTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLL 382
              E++ +  + GF     +GMTE   P +            L  E    K       +L
Sbjct: 276 CPEELMREFIDRGFLFGQGFGMTET-SPTVF----------MLSEEDARRKVGSIGKPVL 324

Query: 383 IQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVR 442
               ++  +N    V      +GE++ R   VM  Y+  P ATEE  ++GW  TGDLA  
Sbjct: 325 FCDYELIDENK-NKVEVGE--VGELLIRGPNVMKEYWNRPDATEETIQDGWLCTGDLARV 381

Query: 443 NPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVK 502
           + DG+V +  R+K++IISG E I  LEVE V+     V E AVVG+   +  E+P+AF+ 
Sbjct: 382 DEDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIV 441

Query: 503 LKEGREASPEELVTFCGDELPSCMVPRAIFF-EDIPVNSTGKVQK 546
            K       ++++  C   L    +P+ I F +++P N+TGK+QK
Sbjct: 442 KKSSSVLIEKDVIEHCRLFLAKYKIPKEIVFLKELPKNATGKIQK 486

Length = 496

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score =  182 bits (464), Expect = 5e-51
 Identities = 152/545 (27%), Positives = 232/545 (42%), Gaps = 68/545 (12%)

Query: 30  AHVYGDATSIIY----GTVR-FSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALY 84
           A VYG  T++I+    G VR +S+ + ++   + A+    L I +GD VA    N P   
Sbjct: 17  ADVYGHKTALIFESSGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFI 76

Query: 85  KLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKC 144
              F +   GA++  +N RL     A IL+  +A ++    QF                 
Sbjct: 77  FCWFGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQF----------------- 119

Query: 145 DKAPLLVTIPECDHYQPSTCSVAN-NFP--SGSLDYNDLLEMGKADFEMMQPNHECDPIS 201
              P+   I + D        +     P   G   +  L     A      P    D   
Sbjct: 120 --YPMYRQIQQEDATPLRHICLTRVALPADDGVSSFTQLKAQQPATLCYAPPLSTDDTAE 177

Query: 202 VNYTSGSTGDPKGVVYSH---RGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWC-CTW 257
           + +TSG+T  PKGVV +H   R A   S  Q   C +RD  V+L  +  F  +  C CT 
Sbjct: 178 ILFTSGTTSRPKGVVITHYNLRFAGYYSAWQ---CALRDDDVYLTVMPAFHID--CQCTA 232

Query: 258 AMAA--VGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILN--MIANASASDQNQLQRK 313
           AMAA   G   V +   SA+  +  +  ++ T     P ++   M+   SA+D+    R+
Sbjct: 233 AMAAFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSANDRQHCLRE 292

Query: 314 VIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLG------PAIVRQWKPEGESSALDH 367
           V+  +   L   E       FG  +  +YGMTE +       P   R+W   G      +
Sbjct: 293 VMFYLN--LSDQEKDAFEERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGR-PGFCY 349

Query: 368 EHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEE 427
           E E+   R+  N  L  G   +    +K VP  GKT+             Y+ +PKAT +
Sbjct: 350 EAEI---RDDHNRPLPAGEIGEIC--IKGVP--GKTI----------FKEYYLDPKATAK 392

Query: 428 AFR-NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVV 486
               +GW HTGD    + +G+    DRR ++I  G E +S +E+E ++ ++PK+ +  VV
Sbjct: 393 VLEADGWLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVV 452

Query: 487 GKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAI-FFEDIPVNSTGKVQ 545
           G  D    E   AFV L EG   S EE   FC   +    VP  +   +D+P N +GK+ 
Sbjct: 453 GIKDSIRDEAIKAFVVLNEGETLSEEEFFAFCEQNMAKFKVPSYLEIRKDLPRNCSGKII 512

Query: 546 KFVLR 550
           K  L+
Sbjct: 513 KKNLK 517

Length = 517

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score =  177 bits (451), Expect = 1e-50
 Identities = 108/362 (29%), Positives = 158/362 (43%), Gaps = 31/362 (8%)

Query: 198 DPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTW 257
           DP  + +TSG+TG PKGV  +H+    ++        +      L  + +F  +G   + 
Sbjct: 3   DPALILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKLTPSDRCLNVMPLFHIHGLIVS- 61

Query: 258 AMAAV--GGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILN-MIANASASDQNQLQRKV 314
            +A +  GG  VC    SA   +D I  ++VT     P I   ++  A  +      R  
Sbjct: 62  LLATLLAGGSVVCPPKFSASKFWDDIAKYRVTWYSAVPTIHQILLKTAKPNPGKPPPRLR 121

Query: 315 IIVIAGVLPTIEVLEQV-ANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTK 373
            I  A       VL+++   FG  +  AYGMTE                           
Sbjct: 122 FIRSASAPLPPAVLDRLEKRFGVPVLEAYGMTEAAHQIASNP-------------LPPLV 168

Query: 374 HREGLNNLLIQGVDVKQQNTMKSVPHDGKTL-----GEVMFRANTVMLGYFKNPKATEEA 428
            + G        V       +  +  DG+ L     GE++ R   V  GY  NP+A  EA
Sbjct: 169 RKPGS-------VGRPAGVEVAILDDDGRPLPPGQEGEIVIRGPNVTAGYLNNPEANREA 221

Query: 429 FRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGK 488
           FR+GW+ TGDL   + DGY+ +  R K++I  G E IS  EVE VLL +P V EA V G 
Sbjct: 222 FRDGWFRTGDLGYLDEDGYLFLTGRIKELINRGGEKISPREVEEVLLRHPAVAEAVVFGV 281

Query: 489 VDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFF-EDIPVNSTGKVQKF 547
            D+   E   A V L+   + + EEL  F    L +  VP+ I F + +P  +TGK+Q+ 
Sbjct: 282 PDELYGEEVAAAVVLRADSKVTIEELRDFARKRLAAFKVPKKILFVDALPKGATGKIQRR 341

Query: 548 VL 549
            L
Sbjct: 342 KL 343

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score =  178 bits (454), Expect = 8e-50
 Identities = 134/545 (24%), Positives = 199/545 (36%), Gaps = 105/545 (19%)

Query: 24  DFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPAL 83
           D L   A  + D T+++ G  R ++R+      +LA+ L  L I  GD V    PN+   
Sbjct: 19  DLLAANAARHPDRTAVVDGPRRLTYRELDAAVDRLAAGLLALGIGPGDRVLVQLPNVAEF 78

Query: 84  YKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHK 143
             L+FA+   GA+         +  +    RQ EAK   +  +F                
Sbjct: 79  VILYFALFKLGAIPVLALPAHRAHEIGHFARQSEAKAYIIADRF---------------- 122

Query: 144 CDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVN 203
                                           DY        A    +      D     
Sbjct: 123 -----------------------------SGFDY-------AALARELLEELP-DVALFQ 145

Query: 204 YTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTL---DMF--RCNGWCCTWA 258
            + G+TG PK +  +H     ++ A    C +    V+L  L     F     G      
Sbjct: 146 LSGGTTGLPKLIPRTHNDYLYSARASAEACGLDPGTVYLAVLPAAHNFTLSSPGLLGALL 205

Query: 259 MAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVI 318
               GG  V     S  + F  I   KVTH    P +LN+   A+  DQ  L    +I +
Sbjct: 206 ---AGGTVVLHHPPSPDVAFPLIEREKVTHTALVPALLNLWLEAAEWDQADLSSLRVIQV 262

Query: 319 AGVLPTIEVLEQVAN-FGFNIRHAYGMTEVLG--------PAIV-----RQWKPEGESSA 364
            G   + E+  +V    G  ++  +GM E L         P ++     R   P  E   
Sbjct: 263 GGAPLSPELARRVEERLGCPLQQVFGMAEGLVNYTRLDDPPDVIMRTQGRPISPADEIRI 322

Query: 365 LDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKA 424
           +D + E      G                          +GE++ R    + GY++ P+ 
Sbjct: 323 VDDQGEPV--PPG-------------------------EVGELLTRGPYTIRGYYRAPEH 355

Query: 425 TEEAF-RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEA 483
              AF  +G+Y TGDL   + DGY ++  R KD I  G E IS  E+E +LLS+P V +A
Sbjct: 356 NARAFTDDGFYRTGDLVRIDADGYYRVVGRIKDQINRGGEKISPEEIENLLLSHPAVADA 415

Query: 484 AVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFC-GDELPSCMVP-RAIFFEDIPVNST 541
           AVVG  D+ L E   AFV  + G   +  EL  F     L    +P R    + +P+   
Sbjct: 416 AVVGMPDEVLGERICAFVVPRGGAAPTLAELRAFLREQGLAKFKLPDRLEVVDSLPLTPV 475

Query: 542 GKVQK 546
           GKV K
Sbjct: 476 GKVDK 480

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score =  178 bits (453), Expect = 1e-49
 Identities = 150/545 (27%), Positives = 232/545 (42%), Gaps = 90/545 (16%)

Query: 35  DATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAG 94
           D  +++Y     S+ + HQ  L+ A  L    I +GD+VA +  N  A  +L FA    G
Sbjct: 17  DRAALVYRDQEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLG 76

Query: 95  AVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIP 154
           AV   +N RL +  +A IL    AK++ VD +F  +V  AL+           P +V   
Sbjct: 77  AVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAIV--ALE----------TPKIVI-- 122

Query: 155 ECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKG 214
                Q  +  +A                G  +          D + + YTSG+T  PKG
Sbjct: 123 -DAAAQADSRRLAQ---------------GGLEIPPQAAVAPTDLVRLMYTSGTTDRPKG 166

Query: 215 VVYSHRGAYLNSLAQIS----RCDVRDMPVF-LWTLDMFRCNGWCCTWAMAAVGGINVCI 269
           V++S+   +  S+  +         R + V  L+ +  F   G    W    VGG     
Sbjct: 167 VMHSYGNLHWKSIDHVIALGLTASERLLVVGPLYHVGAFDLPGIAVLW----VGGTLRIH 222

Query: 270 RTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLE 329
           R    + +  +I  H++T     P +L+ +      D+  L   +   I G   T E   
Sbjct: 223 REFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDLD-SLAWCIGGGEKTPE--S 279

Query: 330 QVANFGFNIRHA-----YGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQ 384
           ++ +F      A     YG+TE                                + L+  
Sbjct: 280 RIRDFTRVFTRARYIDAYGLTETCSG----------------------------DTLMEA 311

Query: 385 GVDV-KQQNTMKSVPH--------DGKTL-----GEVMFRANTVMLGYFKNPKATEEAFR 430
           G ++ K  +T +++ H         G+ L     GE+  R   V  GY+K+P+ T EAF 
Sbjct: 312 GREIEKIGSTGRALAHVEIRIADGAGRWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAFY 371

Query: 431 NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVD 490
             W+ +GD+   + +G++ + DR+KD+IISG E I+S EVE V+   P+V EAAV+G  D
Sbjct: 372 GDWFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHD 431

Query: 491 DQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVL 549
           D+  E   A V L  G   + E L   C   L S  VPR +   D +P N +GKV K VL
Sbjct: 432 DRWGERITAVVVLNPGATLTLEALDRHCRQRLASFKVPRQLKVRDELPRNPSGKVLKRVL 491

Query: 550 RGKVN 554
           R ++N
Sbjct: 492 RDELN 496

Length = 497

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score =  176 bits (448), Expect = 8e-49
 Identities = 150/557 (26%), Positives = 220/557 (39%), Gaps = 88/557 (15%)

Query: 24  DFLER-AAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPA 82
            FL+R      GD  ++ Y     ++ +  +   +  +AL +L I R + V  +  + P 
Sbjct: 8   YFLDRHLNEGRGDKIALYYDDGSLTYGELQEEVNRWGNALRELGIERENRVLLILLDTPE 67

Query: 83  LYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNH 142
                +     GAV   +NT L        L    A+++ +  +  EV++ AL       
Sbjct: 68  FPTAFWGAIKIGAVPVPINTLLTPDDYRYYLNDSRARVLVISEELWEVLKPALQ------ 121

Query: 143 KCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISV 202
              K P L  +            V      G+L Y  L+     + E        D    
Sbjct: 122 ---KDPHLRHV-----------IVVGGAGPGALSYAQLIATAAEELEA-AATSADDMAFW 166

Query: 203 NYTSGSTGDPKGVVYSHRG------AYLNSLAQISRCDVRDMPVFLWTLDMF---RCNGW 253
            Y+SGSTG PKGVV+ H        AY  ++  I+  DV    VF      F     NG 
Sbjct: 167 LYSSGSTGRPKGVVHLHHDMLVTAEAYAKNVLGITEDDV----VFSAAKLFFAYGLGNG- 221

Query: 254 CCTWAMAAVGGINVCI-RTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQR 312
              + ++ VG   V +    +   +F +I  +K T   G P +   +  A    +  L  
Sbjct: 222 -LYFPLS-VGATTVLMPERPTPDAVFATIERYKPTVFFGVPTLYAAMLAAPEKPERDLSS 279

Query: 313 KVIIVIAG-VLPTIEVLEQ-VANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHE 370
             + V AG  LP  E+  +    FG  I    G TE+L                    H 
Sbjct: 280 LRLCVSAGEALPA-EIGYRWKELFGLEILDGIGSTEML--------------------HI 318

Query: 371 MTKHREGLNNLLIQGVDVKQQNTMKSVP-----------HD--GKTLGEVMFRANTVMLG 417
              +R G          VK   + K VP            +     +GE+  R ++   G
Sbjct: 319 FLSNRPG---------AVKYGTSGKPVPGYEVKLVDEDGEEVADGEIGELWVRGDSSAAG 369

Query: 418 YFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSN 477
           Y+   + T E F   W  TGD   R+ DGY     R  D++      +S  EVE  LL +
Sbjct: 370 YWNRREKTRETFVGEWTRTGDKYYRDEDGYYWYCGRSDDMLKVSGIWVSPFEVEDALLQH 429

Query: 478 PKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPE---ELVTFCGDELPSCMVPRAI-FF 533
           P VLEAAVVG  D+     P AFV LK+G + SPE   EL  F  D+L     PR I F 
Sbjct: 430 PAVLEAAVVGAEDEDGLTKPKAFVVLKDGYQPSPELETELKDFVKDKLAPYKYPRWIEFV 489

Query: 534 EDIPVNSTGKVQKFVLR 550
           +++P  +TGK+Q+F LR
Sbjct: 490 DELPKTATGKIQRFKLR 506

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score =  171 bits (435), Expect = 2e-47
 Identities = 101/358 (28%), Positives = 151/358 (42%), Gaps = 28/358 (7%)

Query: 202 VNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAMAA 261
           + YTSG+TG+PKGV+++H        + + R  +    V L    +    G+     +  
Sbjct: 98  LLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLGLTPDDVVLMPSPLAHITGFLYGLELPL 157

Query: 262 VGGINVCI-RTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAG 320
           + G  V +          + I  H VT   G    L  +  A+ +    L    + +  G
Sbjct: 158 LLGATVVLQDRWDPARALELIREHGVTFTMGATPFLADLLAAADAAGPDLPSLRVFLCGG 217

Query: 321 V-LPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLN 379
             +P           G  +  AYGMTEV  P +         +     + +    R   +
Sbjct: 218 APVPRELARRAAEALGAKVVRAYGMTEV--PLV---------TVGTPDDPDDK--RAATD 264

Query: 380 NLLIQGVDVKQQNTMKSVPHDGKTL-----GEVMFRANTVMLGYFKNPKATEEAFRNGWY 434
              + GV+V+       V  DG  +     GE+  R   + LGY   P  TE    +GW+
Sbjct: 265 GRPVPGVEVR------IVDDDGNDVPPGEEGELQVRGPQLFLGYLDPPDNTEAFTDDGWF 318

Query: 435 HTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLK 494
            TGDL   + DGY+++  R+KDIII G E IS+ E+E +LL +P V E AVV   D++L 
Sbjct: 319 RTGDLGRLDADGYLRITGRKKDIIIRGGENISAREIEDLLLRHPAVAEVAVVAMPDERLG 378

Query: 495 EVPVAFVKLKEGREASPEELVTFC-GDELPSCMVP-RAIFFEDIPVNSTGKVQKFVLR 550
           E   A V    G   +  EL        L     P R    + +P   +GKVQKF LR
Sbjct: 379 ERVCAVVVPAPGASLTLAELTEHLAAQGLAKQKWPERLEVVDALPRTPSGKVQKFELR 436

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score =  170 bits (433), Expect = 2e-47
 Identities = 112/366 (30%), Positives = 168/366 (45%), Gaps = 41/366 (11%)

Query: 198 DPISVNYTSGSTGDPKGVVYSHRGAYLN--SLAQISRCDVRDMPVFLWTLDMFR----CN 251
           DP  + YTSG+TG PKGVV +H     N  +L +  R    D  V L  L +       N
Sbjct: 89  DPALIIYTSGTTGRPKGVVLTHGNLAANARALVEAWRWTASD--VLLHALPLHHVHGLFN 146

Query: 252 GWCCT-WAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANA--SASDQN 308
              C  WA A+V      +     +      L+ ++T   G P I   +           
Sbjct: 147 ALHCPLWAGASV----EFLPRFDPQERDALRLLPRITVFMGVPTIYTRLLEHYEFDDAAA 202

Query: 309 QLQRKVIIVIAG--VLPTIEVLEQVAN-FGFNIRHAYGMTEVLGPAIVRQWKPEGESSAL 365
              R + + ++G   LP   VLE+     G  +   YGMTE  G A+         S+ L
Sbjct: 203 AAARNLRLFVSGSAALPV-PVLERWEERTGHTLLERYGMTET-GMAL---------SNPL 251

Query: 366 DHEHEMTKHREGLNNLLIQGVDVK--QQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPK 423
           D E      R G   L + GV+V+   ++  + +      +GE+  R   V   Y+  P+
Sbjct: 252 DGER-----RPGTVGLPLPGVEVRIVDEDGGEPLAAG--EVGEIQVRGPNVFSEYWNKPE 304

Query: 424 ATEEAFR-NGWYHTGDLAVRNPDGYVQMKDRRKDIII-SGAEIISSLEVEAVLLSNPKVL 481
           AT EAF  +GW+ TGD+ V + DGY ++  R+ D II SG   +S+LE+E  LL +P V 
Sbjct: 305 ATAEAFTEDGWFKTGDVGVVDEDGYYRILGRKSDDIIKSGGYKVSALEIEEALLEHPGVA 364

Query: 482 EAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFF-EDIPVNS 540
           E AV+G  D    E  VA V  + G   +  EL  +  ++L    +P+ +   +++P N+
Sbjct: 365 EVAVIGVPDPDWGEAVVAVVVPEAGAALTLAELRAWAREKLAPYKIPKRVIVVDELPRNA 424

Query: 541 TGKVQK 546
            GKVQK
Sbjct: 425 MGKVQK 430

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score =  169 bits (429), Expect = 2e-45
 Identities = 126/545 (23%), Positives = 206/545 (37%), Gaps = 119/545 (21%)

Query: 39  IIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLS 98
            + G    ++R+ ++    LAS L  L I  GD VA  A N P       A+   GAV  
Sbjct: 39  ELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSV 98

Query: 99  ALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDH 158
            + +      LA IL + E+K+IFV+       Q  LD++ P  + D   ++  I   D 
Sbjct: 99  PIYSTSTPEQLAYILNESESKVIFVE------NQELLDLVLPVLE-DCPKVVDLIVIIDL 151

Query: 159 YQPSTCSVANNFP-SGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVY 217
            + +  + A           +  L         + P    D  ++ YTSG+TG PKGV+ 
Sbjct: 152 VREAVEAKALVLEVFPDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVML 211

Query: 218 SHRGAYLNSLAQISRCDVRDMPV--------FL--WTLDMFRCNGWCCTWAMAAVGGINV 267
           +HR    N LAQ++  D    P+        FL    +   R         +A  GG+ V
Sbjct: 212 THR----NLLAQVAGIDEVLPPIGPGDRVLSFLPLAHI-FERA----FEGGLALYGGVTV 262

Query: 268 CIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANA--SASDQNQLQRKVIIVIA------ 319
             +    + + + +   + T + G PR+   +         +    R+ +   A      
Sbjct: 263 LFKE-DPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYK 321

Query: 320 ---------GVLPT-------------------------------IEVLEQVANFGFNIR 339
                    G L                                  E+L    + G  I 
Sbjct: 322 KISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSLGIPIL 381

Query: 340 HAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPH 399
             YG+TE      V    P+                 G     + G++VK          
Sbjct: 382 EGYGLTETSAVVSV--NPPDRF-------------VLGTVGKPLPGIEVK---------- 416

Query: 400 DGKTL---GEVMFRANTVMLGYFKNPKATEEAF-RNGWYHTGDLAVRNPDGYVQMKDRRK 455
               +   GE++ R   VM GY+KNP+AT EAF  +GW+ TGDL   + DGY+ +  R+K
Sbjct: 417 ----IADDGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGRKK 472

Query: 456 DIII-SGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFV-----KLKEGREA 509
           ++I  S  + I+   +E+ L  +P + +  VVG      K+  VA +      L++  E+
Sbjct: 473 ELIKLSNGKNIAPEPIESKLAKSPLIEQICVVG----DDKKFLVALIVPDFDALEKWAES 528

Query: 510 SPEEL 514
             + +
Sbjct: 529 LNKVI 533

Length = 613

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score =  162 bits (413), Expect = 1e-44
 Identities = 112/378 (29%), Positives = 176/378 (46%), Gaps = 61/378 (16%)

Query: 191 MQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRC 250
           +QP+ +  P ++ +TSGSTG PK VV++  G +L S A+ S     ++            
Sbjct: 72  LQPDLD-RPATIIFTSGSTGKPKAVVHT-WGNHLAS-ARGSA---ENLG--------LTP 117

Query: 251 N-GWCCTWAMAAVGGINVCIRTV------------SAKIIFDSILIHKVTHLCGQP---- 293
           +  W  +  +  V G+ + +R++             A+ I +++  H VTH+   P    
Sbjct: 118 DDNWLLSLPLFHVSGLAIVMRSLLAGGALVLPDKFDAEAIAEALENHGVTHISLVPTQLQ 177

Query: 294 RILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIV 353
           R+L      S   +     + +++    +P   +LEQ    G  +   YGMTE    + V
Sbjct: 178 RLLE-----SLGARWLSSLRAVLLGGAPIPP-SLLEQARQRGIPLYPTYGMTET--ASQV 229

Query: 354 RQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANT 413
              KP+   + L    +    RE    L I    V  Q+            GE++ R  +
Sbjct: 230 ATLKPDDFLAKLGSVGKPLPGRE----LRI----VNPQD------------GEILVRGPS 269

Query: 414 VMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAV 473
           + LGY      T     +GW+HTGDL   + +GY+ +  RR D+IISG E I   E+EAV
Sbjct: 270 LFLGYLPQGGLTPPLDEDGWFHTGDLGYLDAEGYLYVLGRRDDLIISGGENIYPEEIEAV 329

Query: 474 LLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFF 533
           LL +P V EAAVVG  DD+  + PVAFV   +    S EEL  F  D+L     P+  + 
Sbjct: 330 LLQHPAVEEAAVVGVPDDEWGQRPVAFVVPNDD-PVSVEELQAFLADKLAKYKRPKRWYP 388

Query: 534 -EDIPVNSTGKVQKFVLR 550
             ++P N++GK+ +  LR
Sbjct: 389 LPELPRNASGKIDRAALR 406

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score =  165 bits (420), Expect = 1e-44
 Identities = 139/567 (24%), Positives = 222/567 (39%), Gaps = 66/567 (11%)

Query: 26  LERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYK 85
           L R A + G+A   I G  R +  +     L LA+ L +L +  GD+VA  A N     +
Sbjct: 13  LTRLATLRGNAVVTISGNRRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLE 72

Query: 86  LHFAVPMAGAVLSALNTR--LDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHK 143
              AV  AG +++ LN R   + A  A                 + +V+  + +   +  
Sbjct: 73  WLLAVACAGGIVAPLNYRWSFEEAKSA-----------------MLLVRPVMLVT--DET 113

Query: 144 CDKAPLLVTIPECDH-----YQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECD 198
           C      +            +  S  S    F +  L    L +      E+       D
Sbjct: 114 CSSWYEELQNDRLPSLMWQVFLESPSSSVFIFLNSFLTTEMLKQRALGTTELDYAWAPDD 173

Query: 199 PISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWA 258
            + + +TSG+TG PKGV  SH    + SLA+I+     +  V+L T  +    G     A
Sbjct: 174 AVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSALA 233

Query: 259 MAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVI 318
           M  VG  +V +    AK    +I  H VT +   P ++  + + +           +  I
Sbjct: 234 MLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKI 293

Query: 319 ---AGVLPTIEVLEQVANFGFNIR--HAYGMTEVLGP-AIVRQWKPEGESSALDHEHEMT 372
               G L +  +L        N +   AYGMTE       +    P  ES     +  + 
Sbjct: 294 LNGGGSLSS-RLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQ-TVN 351

Query: 373 KHREGLNNLLIQGVDVKQQNTMKSVPH--------DGKTLGEVMFRANTVMLGYFKNPKA 424
           + +    +   QGV V      K  PH        +   +G ++ R   VMLGY+     
Sbjct: 352 QTKSSSVHQP-QGVCVG-----KPAPHVELKIGLDESSRVGRILTRGPHVMLGYWGQNSE 405

Query: 425 T-EEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEA 483
           T      +GW  TGD+   +  G + +  R  D I +G E +   EVEAVL  +P V   
Sbjct: 406 TASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPGVASV 465

Query: 484 AVVGKVDDQLKEVPVAFVKLKEG--------------REASPEELVTFCGDE-LPSCMVP 528
            VVG  D +L E+ VA V+L++G                 S E L   C ++ L    +P
Sbjct: 466 VVVGVPDSRLTEMVVACVRLRDGWIWSDNEKENAKKNLTLSSETLRHHCREKNLSRFKIP 525

Query: 529 RAIFF--EDIPVNSTGKVQKFVLRGKV 553
           +      +  P+ +TGK+++  +R +V
Sbjct: 526 KLFVQWRKPFPLTTTGKIRRDEVRREV 552

Length = 563

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score =  156 bits (395), Expect = 5e-41
 Identities = 154/572 (26%), Positives = 245/572 (42%), Gaps = 66/572 (11%)

Query: 18  VPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLK---LASALA-QLKISRGDIV 73
           VPL+    LE  + V+GD T   +G           I  +   LA AL  +L I+    V
Sbjct: 8   VPLSLTRILEYGSTVHGDTTVTTWGGAEQEQTTFAAIGARAAALAHALHDELGITGDQRV 67

Query: 74  AAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQN 133
            +M  N     ++ FAV   GAV + LN +L +  +  I+   E ++I  D +  E +  
Sbjct: 68  GSMMYNCAEHLEVLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGE 127

Query: 134 ALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSG--SLDYNDLLEMGKADFEMM 191
            L       +C     +V I   D    +      + P G     Y  LL+     ++  
Sbjct: 128 IL------KECPCVRAVVFIGPSDADSAAA-----HMPEGIKVYSYEALLDGRSTVYDWP 176

Query: 192 QPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCD---VRDMPVFLWTLDMF 248
           + + E    ++ Y++G+TG PKGVVYSHR  YL SL  +   D   V     FL  + ++
Sbjct: 177 ELD-ETTAAAICYSTGTTGAPKGVVYSHRSLYLQSL-SLRTTDSLAVTHGESFLCCVPIY 234

Query: 249 RCNGWCCTWAMAAVGGINVCI--RTVS----AKIIFDSILIHKVTHLCGQPRI-LNMIAN 301
               W    A A + G  +      +S    AKII  ++   +V H  G P + + ++ +
Sbjct: 235 HVLSWGVPLA-AFMSGTPLVFPGPDLSAPTLAKIIATAM--PRVAH--GVPTLWIQLMVH 289

Query: 302 ASASDQNQLQRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGE 361
              +   ++  + I V    +P I +      +G ++ H +GMTE      V +  P G 
Sbjct: 290 YLKNPPERMSLQEIYVGGSAVPPILIKAWEERYGVDVVHVWGMTETSPVGTVAR-PPSGV 348

Query: 362 SSALDHEHEMTKHR--EGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYF 419
           S      + +++ R    L   +     V     M+S   D +  GE+  R N V   Y+
Sbjct: 349 SGEARWAYRVSQGRFPASLEYRI-----VNDGQVMES--TD-RNEGEIQVRGNWVTASYY 400

Query: 420 KNPKATEEA----FR-------------NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGA 462
            +P          FR             +GW  TGD+     DG++ + DR +D+I SG 
Sbjct: 401 HSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGG 460

Query: 463 EIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGRE---ASPEELVTFCG 519
           E I S ++E  +++ P+V+E AV+G  DD+  E P+A   L  G E    + E L     
Sbjct: 461 EWIYSAQLENYIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIEPTRETAERLRDQLR 520

Query: 520 DELPSCMVPRA-IFFEDIPVNSTGKVQKFVLR 550
           D LP+ M+P    F ++I   S GK  K  LR
Sbjct: 521 DRLPNWMLPEYWTFVDEIDKTSVGKFDKKDLR 552

Length = 576

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score =  150 bits (381), Expect = 5e-40
 Identities = 104/386 (26%), Positives = 148/386 (38%), Gaps = 69/386 (17%)

Query: 198 DPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWC-CT 256
           DP  + +TSG+TG PK V+++H     + +      D+R   +     D     GW    
Sbjct: 82  DPALLYFTSGTTGLPKMVLHTHSYPLGHLVTGAYWLDLRPDDLHWTIAD----PGWAKGA 137

Query: 257 W----AMAAVGGINVCIRTV--SAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQL 310
           W    A   +G            A+   + +  + VT  C  P    M+     S  +  
Sbjct: 138 WSSLFAPWLLGAAVFVYHGRRFDAERTLELLERYGVTTFCAPPTAYRMLLQQDLSSYDFS 197

Query: 311 QRKVIIVIAGVLPTIEVLEQ-VANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEH 369
             + + V AG     EV++   A  G  IR  YG TE                       
Sbjct: 198 HLRHV-VSAGEPLNPEVIDWWRAATGLPIRDGYGQTE----------------------- 233

Query: 370 EMTKHREGLNNLLI---QGVDVKQQNTMKSVP--------HDGKTLG---------EVMF 409
                      LL+    G++VK  +  +  P         +G  L           V  
Sbjct: 234 ---------TGLLVANFPGMEVKPGSMGRPAPGYRVAIIDDEGNELPPGEEGDIAVRVKP 284

Query: 410 RANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLE 469
           R   +  GY K+P+ TE   R  WY TGD A+++ DGY     R  D+I S    I   E
Sbjct: 285 RPPGLFRGYLKDPEKTEATIRGDWYLTGDRAIKDEDGYFWFVGRADDVIKSSGYRIGPFE 344

Query: 470 VEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPE---ELVTFCGDELPSCM 526
           VE+ L+ +P V EAAVVG  D    EV  AFV L  G + S E   EL            
Sbjct: 345 VESALIEHPAVAEAAVVGSPDPVRGEVVKAFVVLAPGYQPSEELAKELQEHVKKRTAPYK 404

Query: 527 VPRAI-FFEDIPVNSTGKVQKFVLRG 551
            PR I F E++P   +GK+++  LR 
Sbjct: 405 YPREIEFVEELPKTVSGKIRRVELRA 430

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score =  150 bits (380), Expect = 8e-40
 Identities = 120/377 (31%), Positives = 160/377 (42%), Gaps = 50/377 (13%)

Query: 198 DPISVNYTSGSTGDPKGVVYSHR-----GAYLNSLAQISRCDVRDMPVFLWTLDMFRCNG 252
           D  +  YTSG+TG PKGV           AY+         D+RD  VF    D     G
Sbjct: 89  DLFAQMYTSGTTGLPKGVPVPLNALAAFYAYMRYAI-----DLRDDDVFWNIAD----PG 139

Query: 253 WCCTWAMAAVGGINVCIRTV------SAKIIFDSILIHKVTHLCGQPRILNMI----ANA 302
           W      A  G + + I TV      +A+  +D +    VT+  G P    M+    A+A
Sbjct: 140 WAYGLYYAITGPLAMGITTVFLEGGFTAENTYDVLERLGVTNFAGSPTAYRMLMAAGADA 199

Query: 303 SASDQNQLQRKVIIVIAGVLPTIEVLEQV-ANFGFNIRHAYGMTEVLGPAIVRQWKPEGE 361
           +A  + +L+       AG     EV+    AN G  I   YG TE   P         G 
Sbjct: 200 AARIKLKLRV---ASSAGEPLNPEVVRWFQANLGVTIHDHYGQTETGMPV--------GN 248

Query: 362 SSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVML----G 417
             AL HE      R G   L + G  +   +     P      G++     +  L    G
Sbjct: 249 HHALAHEV-----RAGSMGLPLPGYRIAVLDD-DGQPLADGEPGQLAIDVASSPLLWFSG 302

Query: 418 YFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSN 477
           Y+ +P+ T E     WY TGDL  R+ DGY     R  D+IIS    I   +VE+ LL +
Sbjct: 303 YWDDPEKTAELIAGRWYVTGDLVERDEDGYFWFIGRADDVIISAGYRIGPFDVESALLEH 362

Query: 478 PKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASP---EELVTFCGDELPSCMVPRAI-FF 533
           P V EAAVVG  D    E+  AFV LKEG   S    EEL  F    L +   PR + F 
Sbjct: 363 PAVAEAAVVGVPDPLRGEIVKAFVVLKEGYAGSDELAEELQLFVKKRLSAHAYPREVEFV 422

Query: 534 EDIPVNSTGKVQKFVLR 550
             +P   +GK+Q+F+LR
Sbjct: 423 PALPKTPSGKIQRFLLR 439

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score =  152 bits (385), Expect = 1e-39
 Identities = 142/575 (24%), Positives = 232/575 (40%), Gaps = 96/575 (16%)

Query: 18  VPLTPI-DFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQ-LKISRGDIVAA 75
           +P T +   LE +A  Y D T+I++     S+R+  +   +LA  L Q   + +GD V  
Sbjct: 7   LPETSLFHNLEVSARRYPDKTAIVFYGRAISYRELLEEAERLAGYLQQECGVRKGDRVLL 66

Query: 76  MAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNAL 135
              N P     ++A+  A AV+  +N       LA  +    A++  V  +    V  A+
Sbjct: 67  YMQNSPQFVIAYYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAV 126

Query: 136 DILSPNH-------KCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADF 188
             L   H           A   + +P     +P    +    P G + + + L  G A  
Sbjct: 127 GNLRLRHVIVAQYSDYLPAEPEIAVPAWLRAEPP---LQALAPGGVVAWKEALAAGLA-- 181

Query: 189 EMMQPNHECDP--ISV-NYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTL 245
               P H   P  ++V  YTSG+TG PKG +++HR    N++  +   +     V L  L
Sbjct: 182 ---PPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPESVVLAVL 238

Query: 246 DMFRCNGW-CCTWAMAAVGGINVCI----RTVSAKIIFDSILIHKVTH----------LC 290
            +F   G      A    G   V +    R  +A++I      ++VTH            
Sbjct: 239 PLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIER----YRVTHWTNIPTMVVDFL 294

Query: 291 GQPRILNMIANASASDQNQLQRKVIIVIAG---VLPTIEVLEQVAN-----FGFNIRHAY 342
             P +       +  D + L       I G    +P     E VA       G +    Y
Sbjct: 295 ASPGL-------AERDLSSL-----RYIGGGGAAMP-----EAVAERLKELTGLDYVEGY 337

Query: 343 GMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLI--QGVD--VKQQNTMKSVP 398
           G+TE +                    H     R  L  L I   GVD  V    T++ +P
Sbjct: 338 GLTETMAQT-----------------HSNPPDRPKLQCLGIPTFGVDARVIDPETLEELP 380

Query: 399 HDGKTLGEVMFRANTVMLGYFKNPKATEEAF--RNG--WYHTGDLAVRNPDGYVQMKDRR 454
             G+  GE++     V  GY+  P+AT EAF   +G  ++ TGDL   + +GY  + DR 
Sbjct: 381 -PGEV-GEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRL 438

Query: 455 KDII-ISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREA--SP 511
           K +I  SG ++  + EVE +L  +P + EA V+   D +  E   A V L+       + 
Sbjct: 439 KRMINASGFKVWPA-EVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEARGKTTE 497

Query: 512 EELVTFCGDELPSCMVPRAI-FFEDIPVNSTGKVQ 545
           EE++ +  + + +   PR + F + +P + +GK+ 
Sbjct: 498 EEIIAWAREHMAAYKYPRIVEFVDSLPKSGSGKIL 532

Length = 546

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score =  147 bits (373), Expect = 6e-39
 Identities = 96/375 (25%), Positives = 156/375 (41%), Gaps = 52/375 (13%)

Query: 198 DPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTW 257
           D   + YTSG+TG PKG +++HR     + A  +   +    V L  L +F         
Sbjct: 85  DVAVIPYTSGTTGLPKGCMHTHRTVLATAAASAAWSGLTPDSVLLAFLPLF--------H 136

Query: 258 AMAAVGGINVCIRTVSAKIIF---------DSILIHKVTHLCGQPRILNMIANASASDQN 308
                G +N  I T +  ++           +I  ++VTH      ++  +         
Sbjct: 137 VAGMQGSMNAPIYTGATLVLLTRWDREAAARAIERYRVTHWTNIVTMVVDLLAHPRFADY 196

Query: 309 QLQR-KVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDH 367
            L   KV+      LP        A  G      YG+TE                    H
Sbjct: 197 DLSSLKVVGGGGAALPPAVAERLKALTGLLYEEGYGLTETHTC---------------TH 241

Query: 368 EHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTL-----GEVMFRANTVMLGYFKNP 422
            +   + +     + + G D +  +     P  G+ L     GE++ R   V  GY+  P
Sbjct: 242 FNPPDRPKPQCLGIPVFGTDARVID-----PETGEELPPGEEGEIVVRGPQVFKGYWNRP 296

Query: 423 KATEEAFRN----GWYHTGDLAVRNPDGYVQMKDRRKDII-ISGAEIISSLEVEAVLLSN 477
           +AT E+F       ++ TGDL   + +GY    DR K +I +SG ++  + EVEA+L  +
Sbjct: 297 EATAESFIELDGKRFFRTGDLGYIDEEGYFFFLDRVKRMINVSGYKVWPA-EVEALLYQH 355

Query: 478 PKVLEAAVVGKVDDQLKEVPVAFVKLKEGREA--SPEELVTFCGDELPSCMVPRAIFFED 535
           P VLE  V+G+ D +  EV  AFV LK       + E+++ +C + + +   PR I F D
Sbjct: 356 PAVLEVCVIGRPDPRRGEVVKAFVVLKPDYRGKVTEEDIIEWCRERMAAYKYPRIIEFVD 415

Query: 536 -IPVNSTGKVQKFVL 549
            +P  ++GKV   +L
Sbjct: 416 ELPKTASGKVLWRLL 430

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score =  148 bits (375), Expect = 8e-39
 Identities = 126/515 (24%), Positives = 206/515 (40%), Gaps = 89/515 (17%)

Query: 57  KLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQL 116
           +LA+ L +     G+ +A +A N   L  LHFA    GA+   LN RL ++ L ++L+  
Sbjct: 34  RLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRLSASELDALLQDA 93

Query: 117 EAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLD 176
           E +++  D                                D        V         D
Sbjct: 94  EPRLLLGD--------------------------------DAVAAGRTDV--------ED 113

Query: 177 YNDLLEMGKADFEMMQPNHECDPIS-VNYTSGSTGDPKGVVYSHRGAYLNS--LAQISRC 233
               +    A      P+   + +S + +TSG++G PKGV+ S R     +     + R 
Sbjct: 114 LAAFIASADALEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRV 173

Query: 234 DVRDMPVFLWTLDMFRCNGWCCTW--AMAAVGGINVC-----IRTVSAKIIFDSILIHKV 286
           D      FL    MF   G   +    +A  G I V       RT+    + D  L   +
Sbjct: 174 DAHS--SFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKRTL--GRLGDPAL--GI 227

Query: 287 THLCGQPRILNMIANASASDQNQLQRKVIIVIAGVL-PTIEVLEQVANFGFNIRHAYGMT 345
           TH    P++          D   L+    +   G      ++L  + + G  +   +GM+
Sbjct: 228 THYFCVPQMAQAFRAQPGFDAAALRHLTALFTGGAPHAAEDILGWLDD-GIPMVDGFGMS 286

Query: 346 E---VLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQG-----VDVKQQNTMKSV 397
           E   V G ++               + ++ + + G   +         VD +  +    V
Sbjct: 287 EAGTVFGMSV---------------DCDVIRAKAGAAGIPTPTVQTRVVDDQGNDCPAGV 331

Query: 398 PHDGKTLGEVMFRANTVMLGYFKNPKATEEAF-RNGWYHTGDLAVRNPDGYVQMKDRRKD 456
           P      GE++ R   +  GY++ P+AT  AF  +GW+ TGD+A R+ DG+  + DR+KD
Sbjct: 332 P------GELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDRKKD 385

Query: 457 IIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVT 516
           + ISG E +   E+EAVL  +P + E AVVG  D Q  EV    +   +G     E + +
Sbjct: 386 MFISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGAPLDLERIRS 445

Query: 517 FCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLR 550
                L    VP+ +   D +P  ++GK+QK  LR
Sbjct: 446 HLSTRLAKYKVPKHLRLVDALPRTASGKLQKARLR 480

Length = 488

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  145 bits (367), Expect = 1e-38
 Identities = 56/153 (36%), Positives = 82/153 (53%), Gaps = 7/153 (4%)

Query: 405 GEVMFRANTVMLGYFKNPKATEEAFR------NGWYHTGDLAVRNPDGYVQMKDRRKDII 458
           GE++ R   VM GY+ +P+AT E  R          +TGDL   + +GY+    R+ D+I
Sbjct: 198 GELVHRGANVMKGYWNDPEATAERLRPGPLPGEIVLYTGDLVRMDEEGYLYFVGRKDDMI 257

Query: 459 ISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFC 518
            +    +S  E+E V+ ++P V EAAV+G  D  L +  VA V   +G     +EL+  C
Sbjct: 258 KTRGYRVSPTEIEEVICAHPLVAEAAVIGVPDPLLGQAIVAVVVSADGESLDEKELLKHC 317

Query: 519 GDELPSCMVPRAIFFED-IPVNSTGKVQKFVLR 550
              LP+ MVP  I F D +P N+ GKV +  LR
Sbjct: 318 RKHLPNYMVPAEIVFVDSLPKNANGKVDRSALR 350

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score =  145 bits (368), Expect = 4e-38
 Identities = 109/385 (28%), Positives = 159/385 (41%), Gaps = 67/385 (17%)

Query: 198 DPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNG---WC 254
           DP  + YTSG+TG PKG ++ HR   L          +  +P      ++    G   W 
Sbjct: 89  DPAILIYTSGTTGPPKGALHGHR--VL----------LGHLPGVELYFELAPRPGDVFWT 136

Query: 255 -CTWA-MAAVGGINV-----CIRTVS-------AKIIFDSILIHKVTHLCGQPRILNMIA 300
              WA +  +  + +      +  V+        +  F  +  + VT+    P  L M+ 
Sbjct: 137 PADWAWIGGLLDVLLPALYFGVPVVAYRMQRFDPERAFALMRRYGVTNAFLPPTALKMMR 196

Query: 301 NASASDQNQLQRKVIIVIAGVLPTIEVLEQVAN--FGFNIRHAYGMTE---VLGPAIVRQ 355
               S++ +   ++  V +G     E L + A    G  +   YG TE   V+G      
Sbjct: 197 -RVGSERARYDLRLRAVASGGESLGEELLEWARDELGLTVNEFYGQTEANLVVGNCAAL- 254

Query: 356 WKPEGESSALDHEHEMTK----HREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRA 411
                 S        M K    H        +  VD   +      P     +GE+  + 
Sbjct: 255 GPARPGS--------MGKPVPGHE-------VAVVDDAGR------PVPPGEVGEIAVKR 293

Query: 412 N--TVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLE 469
               + LGY+ NP+AT   F   W  TGDL  R+ DGY+  K R  D+I S    I   E
Sbjct: 294 PDPVMFLGYWNNPEATAAKFAGDWLLTGDLGRRDADGYLWFKGRADDVIKSSGYRIGPAE 353

Query: 470 VEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPE---ELVTFCGDELPSCM 526
           +E  LL +P VLEAAVVG  D +  E+  AFV L EG E S E   EL       L +  
Sbjct: 354 IEECLLKHPAVLEAAVVGVPDPERGEIVKAFVVLAEGVEPSDELATELQELVKSRLAAHE 413

Query: 527 VPRAIFFED-IPVNSTGKVQKFVLR 550
            PR I F D +P+ +TGK+++  LR
Sbjct: 414 YPREIEFVDELPMTTTGKIRRRELR 438

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score =  145 bits (368), Expect = 2e-37
 Identities = 115/376 (30%), Positives = 178/376 (47%), Gaps = 46/376 (12%)

Query: 198 DPISVNYTSGSTGDPKGVVYSHRGAYLNSL---AQISRCDVRDMP-VFLWTLDMFRCNG- 252
           D   + YTSG+TG PKG   +HR  + N+    A +    + D P   L  L MF   G 
Sbjct: 220 DVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVP--GLGDGPERVLAALPMFHAYGL 277

Query: 253 -WCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQ 311
             C T A++ +GG  V +      +I D++  H  T L G P +   IA A+      L 
Sbjct: 278 TLCLTLAVS-IGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERGVDL- 335

Query: 312 RKVIIVIAGV--LP--TIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDH 367
             V    +G   LP  T+E+ E++   G  +   YG+TE   P IV              
Sbjct: 336 SGVRNAFSGAMALPVSTVELWEKLT--GGLLVEGYGLTET-SPIIV-------------- 378

Query: 368 EHEMTKHREG------LNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKN 421
            + M+  R          +  ++ VD   ++  +++P DG+  GE++ R   V  GY+  
Sbjct: 379 GNPMSDDRRPGYVGVPFPDTEVRIVD--PEDPDETMP-DGEE-GELLVRGPQVFKGYWNR 434

Query: 422 PKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVL 481
           P+ T ++F +GW+ TGD+ V   DG++++ DR K++II+G   +   EVE VL  +P V 
Sbjct: 435 PEETAKSFLDGWFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVE 494

Query: 482 EAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIF-FEDIPVNS 540
           +AAVVG   +   E  VA V L+ G    PE L  +C + L    VPR  +  +++P + 
Sbjct: 495 DAAVVGLPREDGSEEVVAAVVLEPGAALDPEGLRAYCREHLTRYKVPRRFYHVDELPRDQ 554

Query: 541 TGKVQKFVLRGKVNAT 556
            GK    V R +V   
Sbjct: 555 LGK----VRRREVREE 566

Length = 573

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score =  144 bits (366), Expect = 3e-37
 Identities = 137/558 (24%), Positives = 225/558 (40%), Gaps = 71/558 (12%)

Query: 21  TPIDFLERAAHVYGDATSII------YGTVRFSWRQTHQICLKLASALAQLKISRGDIVA 74
           T  D L+       D T++           RF++R+   +  ++A  LA+L + RGD+V+
Sbjct: 25  TINDDLDACVASCPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVS 84

Query: 75  AMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKII-----FVDYQFVE 129
              PN      L+ A    GAVL+ L        L+ +L+  E+K++     F  +    
Sbjct: 85  CQLPNWWEFTVLYLACSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAA 144

Query: 130 VVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLL-----EMG 184
           + +     L P     + P L  +            V      G+  +  LL     E  
Sbjct: 145 MARR----LRP-----ELPALRHV-----------VVVGG--DGADSFEALLITPAWEQE 182

Query: 185 KADFEMMQPNHECDPISVN---YTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVF 241
                ++       P  V    YTSG+TG+PKGV+++      N +    R  +    V 
Sbjct: 183 PDAPAILA-RLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVI 241

Query: 242 LWTLDMFRCNGWCCTWAMAAVGGINVCIRTV-SAKIIFDSILIHKVTH-LCGQPRILNMI 299
           L    M    G+     M  + G    ++ +       + I    VT  +   P + ++ 
Sbjct: 242 LMASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLT 301

Query: 300 ANASASDQNQLQRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPE 359
                S +     +  +     +P   V    A  G  I  A+GMTE     + +     
Sbjct: 302 RAVKESGRPVSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLTK----- 356

Query: 360 GESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTL-----GEVMFRANTV 414
                LD   E     +G     + GV+V+       V  DG  L     G +  R  + 
Sbjct: 357 -----LDDPDERASTTDGCP---LPGVEVR------VVDADGAPLPAGQIGRLQVRGCSN 402

Query: 415 MLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVL 474
             GY K P+       +GW+ TGDLA  + DGY+++  R KD+II G E I  +E+EA+L
Sbjct: 403 FGGYLKRPQLNGTDA-DGWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALL 461

Query: 475 LSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDE-LPSCMVP-RAIF 532
             +P + + A+V   D++L E   AFV  + G+    EE+V F   + +    +P R + 
Sbjct: 462 YRHPAIAQVAIVAYPDERLGERACAFVVPRPGQSLDFEEMVEFLKAQKVAKQYIPERLVV 521

Query: 533 FEDIPVNSTGKVQKFVLR 550
            + +P   +GK+QKF LR
Sbjct: 522 RDALPRTPSGKIQKFRLR 539

Length = 547

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score =  142 bits (361), Expect = 3e-37
 Identities = 96/367 (26%), Positives = 150/367 (40%), Gaps = 48/367 (13%)

Query: 204 YTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDM------PVFLWTLDMFRCNGWC-CT 256
           YTSG+TG PKGV++ HR          +    R++           +  +F   G     
Sbjct: 98  YTSGTTGKPKGVMHRHRDPLT-----FAEAFARELLGLQPGDRIFSSSKLFFAYGLGNSL 152

Query: 257 WAMAAVGGINVCIRT-VSAKIIFDSILIHKVTHLCGQPRIL-NMIANASASDQNQLQRKV 314
                 G   V +    + + + D +  H+ T L G P +   ++ + + S     +   
Sbjct: 153 LFPLFSGASAVLLPGWPTPEAVLDLLARHRPTVLFGVPALYRALLESGAGSAPL-FRSVR 211

Query: 315 IIVIAG-VLPTIEVLEQVAN-FGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMT 372
           + V AG  LP   + E+ A   G  I    G TEVL   I           +        
Sbjct: 212 LCVSAGEALP-AGLAERWAEATGIEILDGIGSTEVLHIFI-----------SNRPGA--- 256

Query: 373 KHREGLNNLLIQGVDVKQQNTMKSVPHDGKTL-----GEVMFRANTVMLGYFKNPKATEE 427
             R G     + G + +       V   G+ +     G++  R  ++  GY+  P+ T+ 
Sbjct: 257 -ARPGTTGRPVPGYEAR------LVDESGREVPAGTVGDLWVRGPSLAPGYWNLPEKTQR 309

Query: 428 AFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVG 487
             R+GW  TGD   R+ DG+ + + R  D+I    + +S LEVEA L  +P V EAAVV 
Sbjct: 310 TLRDGWLRTGDRFSRDADGWYRYQGRADDMIKVSGQWVSPLEVEAALGEHPAVAEAAVVA 369

Query: 488 KVDDQLKEVPVAFVKLKEGREASP---EELVTFCGDELPSCMVPRAI-FFEDIPVNSTGK 543
             D+       AFV  + G         +L  F  + L     PR I F + +P  +TGK
Sbjct: 370 VPDEDGLVRLKAFVVPRPGEAIQQLLERDLHRFLRERLAPYKCPRQIEFLDTLPRTATGK 429

Query: 544 VQKFVLR 550
           +Q+F LR
Sbjct: 430 LQRFRLR 436

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score =  144 bits (367), Expect = 3e-37
 Identities = 62/160 (38%), Positives = 95/160 (59%), Gaps = 7/160 (4%)

Query: 398 PHDGKTL-----GEVMFRANTVMLGYFKNPKATEEAF-RNGWYHTGDLAVRNPDGYVQMK 451
           P  G+T+     GE+  R  +VM GY+ +P+ T EA   +GW HTGDLAV + +GYV + 
Sbjct: 387 PETGETVPRGEQGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIV 446

Query: 452 DRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASP 511
            R KD+II G E I   E+E  L ++PK+ +  VVG  D++  E   A++ L+ G   + 
Sbjct: 447 GRIKDMIIRGGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPGATLTE 506

Query: 512 EELVTFCGDELPSCMVPRAIFF-EDIPVNSTGKVQKFVLR 550
           E++  FC  ++    +PR I F ++ P+  TGK+QKF +R
Sbjct: 507 EDVRDFCRGKIAHYKIPRYIRFVDEFPMTVTGKIQKFKMR 546

Length = 559

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score =  143 bits (363), Expect = 6e-37
 Identities = 71/168 (42%), Positives = 102/168 (60%), Gaps = 4/168 (2%)

Query: 393 TMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKD 452
            M  VP     +GE+++RA T+M GY+ NP+AT EAF  GW+H+GDL  ++ +GYV + D
Sbjct: 362 NMNDVPVG--EVGEIVYRAPTLMSGYWNNPEATAEAFAGGWFHSGDLVRQDEEGYVWVVD 419

Query: 453 RRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREA-SP 511
           R+KD+IISG E I   EVE VL S+P ++E AV+G+ D++  EVPVA   ++    A + 
Sbjct: 420 RKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDAALTL 479

Query: 512 EELVTFCGDELPSCMVPRAI-FFEDIPVNSTGKVQKFVLRGKVNATAV 558
           E+L  F  D L     P+A+   + +P N  GKV K  LR +  A   
Sbjct: 480 EDLAEFLTDRLARYKHPKALEIVDALPRNPAGKVLKTELRERYGACVN 527

Length = 542

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score =  143 bits (362), Expect = 8e-37
 Identities = 146/562 (25%), Positives = 236/562 (41%), Gaps = 78/562 (13%)

Query: 25  FLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALY 84
           ++E+ A  Y +  ++ +     ++   H    + A+ L +L + +GD VA M PN P   
Sbjct: 29  YVEQMASRYPEKKALHFLGKDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAV 88

Query: 85  KLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIF-VDYQFVEV--VQNAL------ 135
             ++   +AG ++   N       L   L    AK+I  +D  F  V  VQ+A       
Sbjct: 89  IGYYGTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVI 148

Query: 136 ------------DILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEM 183
                       ++L P  +  ++ L+V + E +                   +N + + 
Sbjct: 149 VTRIADFLPFPKNLLYPFVQKKQSNLVVKVSESETIHL---------------WNSVEKE 193

Query: 184 GKADFEMMQPNHECDPIS----VNYTSGSTGDPKGVVYSHRGAYLNSLAQIS---RCDVR 236
                E+      CDP +    + YT G+TG PKGV+ +H+    N+L  +     C   
Sbjct: 194 VNTGVEVP-----CDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNC-KE 247

Query: 237 DMPVFLWTLDMFRCNGWCCTWAMAAVGGIN-VCIRTVSAKIIFDSILIHKVTHLCGQPRI 295
              V L  L  F   G      ++ + G   V I     K++F++I  HKVT   G P I
Sbjct: 248 GEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTI 307

Query: 296 LNMIANASASDQNQLQRKVIIVIAGVLP-TIEVLEQVANF-GFNIRHAYGMTEVLGPAIV 353
              + N+    +  +   +   I+G  P  +EV E+     G  +   YG+TE       
Sbjct: 308 YIALLNSPLLKEYDIS-SIRACISGSAPLPVEVQEKFETVTGGKLVEGYGLTE------- 359

Query: 354 RQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTL-----GEVM 408
                   SS + H + + + R   +     GV       M      G+ L     GE++
Sbjct: 360 --------SSPVTHSNFLWEKRVPGS----IGVPWPDTEAMIMSLETGEALPPGEIGEIV 407

Query: 409 FRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSL 468
            +   +M GY+  P+ T    ++GW HTGD+   + DG+  +KDR+KD+I++    +   
Sbjct: 408 VKGPQIMKGYWNKPEETAAVLQDGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPR 467

Query: 469 EVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVP 528
           EVE VL  + KV E   +G  D    E   AFV LKEG E S EEL  F    L +  VP
Sbjct: 468 EVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGTECSEEELNQFARKYLAAYKVP 527

Query: 529 RAIFFED-IPVNSTGKVQKFVL 549
           +   F D +P  + GK+ + VL
Sbjct: 528 KVYEFRDELPKTTVGKILRRVL 549

Length = 563

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score =  143 bits (363), Expect = 2e-36
 Identities = 141/579 (24%), Positives = 230/579 (39%), Gaps = 74/579 (12%)

Query: 14  SANNVPLTPIDFLERAAHVYGDATSIIYGT--------VRFSWRQTHQICLKLASALAQL 65
           +A ++P +  + L RAA  + DA ++ +            +++ +      + A+ L  L
Sbjct: 19  AARDLPASTYELLSRAAARHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHSL 78

Query: 66  KISRGDIVAAMAPNIPALYKLHFAV--PMAGAVLSALNTRLDSATLASILRQLEAKII-- 121
            +  GD+VA + PN+P   + HFA+    A  + + +N  L+   +A +LR   AK++  
Sbjct: 79  GVGPGDVVAFLLPNLP---ETHFALWGGEAAGIANPINPLLEPEQIAELLRAAGAKVLVT 135

Query: 122 ---FVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECD--HYQPSTCSVANNF-----P 171
              F      + V   L            P L T+ E D   Y P    +A         
Sbjct: 136 LGPFPGTDIWQKVAEVLA---------ALPELRTVVEVDLARYLPGPKRLAVPLIRRKAH 186

Query: 172 SGSLDYNDLLEMGKAD-FEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLN--SLA 228
           +  LD++  L     D     +P    D  +  +T G+TG PK   ++H     N    A
Sbjct: 187 ARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGA 246

Query: 229 QISRCDVRDMPVFLWTLDMFRCNGWCCTWAMAAV-GGINVCIRTVSA---KIIFDSI--L 282
            +      D       L +F  N       +A +  G +V + T        +  +   +
Sbjct: 247 LLLGLGPGD--TVFCGLPLFHVNA-LLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKI 303

Query: 283 I--HKVTHLCGQPRILNMIAN--ASASDQNQLQRKVIIVIAGVLPTIEVLEQV-ANFGFN 337
           +  +++  L G P +   +        D + L  +  +  A  LP +EV  +  A  G  
Sbjct: 304 VERYRINFLSGVPTVYAALLQVPVDGHDISSL--RYALCGAAPLP-VEVFRRFEAATGVR 360

Query: 338 IRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLI--QGVDVKQQNTMK 395
           I   YG+TE     +     P+GE             R G   L +  Q V V   +   
Sbjct: 361 IVEGYGLTE--ATCVSSVNPPDGER------------RIGSVGLRLPYQRVRVVILDDAG 406

Query: 396 SVPHDGKT--LGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDR 453
               D     +G +      V  GY +          +GW +TGDL   + DGY  +  R
Sbjct: 407 RYLRDCAVDEVGVLCIAGPNVFSGYLEAAHNKGLWLEDGWLNTGDLGRIDADGYFWLTGR 466

Query: 454 RKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEE 513
            KD+II G   I    +E  LL +P V  AA VG+ D    E+PVA+V+LK G  A+  E
Sbjct: 467 AKDLIIRGGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGASATEAE 526

Query: 514 LVTFCGDELPS-CMVPRAI-FFEDIPVNSTGKVQKFVLR 550
           L+ F  D +     VP+ +   + +P  + GK+ K  LR
Sbjct: 527 LLAFARDHIAERAAVPKHVRILDALPKTAVGKIFKPALR 565

Length = 632

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score =  140 bits (355), Expect = 5e-36
 Identities = 135/526 (25%), Positives = 214/526 (40%), Gaps = 56/526 (10%)

Query: 35  DATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAG 94
           D +S+ YG +    R+       L +AL +L + R + V  +  +             AG
Sbjct: 27  DISSLSYGELEAQVRR-------LGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAG 79

Query: 95  AVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIP 154
            V  ALNT L +   A +L    A+++FV  + + V++ AL          K+P L    
Sbjct: 80  IVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALG---------KSPHLEHR- 129

Query: 155 ECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKG 214
                      V     +G +   +LL      F+        DP    Y+SGSTG PKG
Sbjct: 130 ----------VVVGRPEAGEVQLAELLATESEQFKP-AATQADDPAFWLYSSGSTGMPKG 178

Query: 215 VVYSHRGAYLNS-LAQISRCDVRDMPVFLWTLDMFRC----NGWCCTWAMAAVGGINVCI 269
           VV++H   Y  + L   +   +R+  V      +F      N      ++ A   +    
Sbjct: 179 VVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGER 238

Query: 270 RTVSAKIIFDSILIHKVTHLCGQPRIL-NMIANASASDQNQLQRKVIIVIAGVLPTIEVL 328
            T  A  +FD +  H+ T   G P +   M+A+ +   ++Q++ ++       LP     
Sbjct: 239 PTPDA--VFDRLRRHQPTIFYGVPTLYAAMLADPNLPAEDQVRLRLCTSAGEALPAEVGQ 296

Query: 329 EQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDV 388
              A FG +I    G TE+L   +          S L  +       + +    ++ V  
Sbjct: 297 RWQARFGVDIVDGIGSTEMLHIFL----------SNLPGDVRYGTSGKPVPGYRLRLVGD 346

Query: 389 KQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYV 448
             Q+     P      GE++    +    Y+ N   T + F+  W  +GD  VRN DG  
Sbjct: 347 GGQDVAAGEP------GELLISGPSSATMYWNNRAKTRDTFQGEWTRSGDKYVRNDDGSY 400

Query: 449 QMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEG-- 506
               R  D++      +S  E+E+ L+ +P VLEAAVVG  D+     P AF+ L+ G  
Sbjct: 401 TYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQD 460

Query: 507 -REASPEELVTFCGDELPSCMVPRAI-FFEDIPVNSTGKVQKFVLR 550
              A   EL     D L     PR I F +D+P  +TGK+Q+F LR
Sbjct: 461 IDTALETELKEHVKDRLAPYKYPRWIVFVDDLPKTATGKIQRFKLR 506

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score =  140 bits (355), Expect = 6e-36
 Identities = 130/530 (24%), Positives = 210/530 (39%), Gaps = 67/530 (12%)

Query: 44  VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTR 103
            RFS+R+      ++A  LA+L + RGD+V+   PN      L+ A    GAVL+ L   
Sbjct: 52  RRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLMPI 111

Query: 104 LDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPST 163
                L+ +L   ++K+  V   F      A+          K P L  +   D      
Sbjct: 112 FRERELSFMLNHADSKVFVVPSVFRGFDHAAM----ARELQSKLPALRQVVVID------ 161

Query: 164 CSVANNFPSGSLDYNDLLEMGK-------ADFEMMQPNHECDPIS-VNYTSGSTGDPKGV 215
                       D  D + M         A   +  P    D ++ + YTSG+TG+PKGV
Sbjct: 162 --------GDGDDSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGV 213

Query: 216 VYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCIRTV--- 272
           +++    + N      R ++    V L    M    G+     M  +      ++ +   
Sbjct: 214 MHTANTLFSNIHPYAERLELGGGDVILMASPMAHQTGFMYGLMMPLILNATAVLQDIWNP 273

Query: 273 --SAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGV-LPTIEVLE 329
             +A++I ++     VT        L  +  A       +      + AG  +P I V  
Sbjct: 274 ARAAELIRET----GVTFTMASTPFLTDLCRAVKESGAPVPSLFTFLCAGAPIPGILVER 329

Query: 330 QVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVK 389
                G  I  A+GMTE     +        ++S  D                + GV+VK
Sbjct: 330 AWELLGALIVSAWGMTENGAVTVTEPDDALEKASTTD-------------GRPLPGVEVK 376

Query: 390 QQNTMKSVPHDGKTL-----GEVMFRANTVMLGYFKNPK--ATEEAFRNGWYHTGDLAVR 442
                  +  +G  L     G ++ R  +   GY K P   +T+     GW+ TGDLA +
Sbjct: 377 ------VIDANGAKLSQGETGRLLVRGCSNFGGYLKRPHLNSTDA---EGWFDTGDLAFQ 427

Query: 443 NPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVK 502
           + +GY+++  R KD+II G E I  +E+E +L  +P V + A+V   D++L E   A V 
Sbjct: 428 DAEGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVV 487

Query: 503 LKEGREASPEELVTFC-GDELPSCMVP-RAIFFEDIPVNSTGKVQKFVLR 550
            K G       +V F    ++    +P R    + +P    GK+QKF LR
Sbjct: 488 PKPGCTLDFAAMVAFLKAQKVALQYIPERLEVVDALPATPAGKIQKFRLR 537

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score =  138 bits (349), Expect = 6e-35
 Identities = 149/575 (25%), Positives = 252/575 (43%), Gaps = 92/575 (16%)

Query: 15  ANNVPLTPIDFLERAAHVYGDATSIIYG-TVR-FSWRQTHQICLKLASALAQLKISRGDI 72
            N++PL    F ER +  + D   +I G T R +++     +  ++A+ L +L I +GD+
Sbjct: 20  PNHLPLHDYCF-ERLSE-FSDRPCLIDGATGRVYTYADVELLSRRVAAGLHKLGIRQGDV 77

Query: 73  VAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQ 132
           V  + PN P            GAV +  N     A +A   +   AK+I     +V+ ++
Sbjct: 78  VMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLK 137

Query: 133 NALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQ 192
                       D    +VTI              ++ P G L +++L +    + E+ +
Sbjct: 138 G--------LAEDDGVTVVTI--------------DDPPEGCLHFSELTQ--ADENELPE 173

Query: 193 PN-HECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQ----------ISRCDVRDMPVF 241
                 D +++ Y+SG+TG PKGV+ +H+G  + S+AQ              DV      
Sbjct: 174 VEISPDDVVALPYSSGTTGLPKGVMLTHKG-LVTSVAQQVDGENPNLYFHSDDV-----I 227

Query: 242 LWTLDMFRCNGWCCTWAMAAVGGINVC-IRTVSAKII---------FDSILIHKVTHLCG 291
           L  L MF          + ++  + +C +R  +A +I          + I  HKVT    
Sbjct: 228 LCVLPMFH---------IYSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPF 278

Query: 292 QPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQV-------ANFGFNIRHAYGM 344
            P I+  IA +   ++  L   + +V++G  P  + LE         A  G      YGM
Sbjct: 279 VPPIVLAIAKSPVVEKYDLS-SIRMVLSGAAPLGKELEDAFRAKLPNAVLG----QGYGM 333

Query: 345 TEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVK--QQNTMKSVPHDGK 402
           TE  GP +         +  L    E    + G    +++  ++K     T  S+P +  
Sbjct: 334 TEA-GPVL---------AMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLPRNQP 383

Query: 403 TLGEVMFRANTVMLGYFKNPKATEEAF-RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISG 461
             GE+  R   +M GY  +P+AT     ++GW HTGD+   + D  + + DR K++I   
Sbjct: 384 --GEICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYK 441

Query: 462 AEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDE 521
              ++  E+EA+L+S+P + +AAVV   D+   EVPVAFV    G E + +E+  F   +
Sbjct: 442 GFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSNGSEITEDEIKQFVAKQ 501

Query: 522 LPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNA 555
           +        +FF D IP   +GK+ +  LR K+ A
Sbjct: 502 VVFYKRIHKVFFVDSIPKAPSGKILRKDLRAKLAA 536

Length = 537

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score =  135 bits (341), Expect = 2e-34
 Identities = 126/525 (24%), Positives = 200/525 (38%), Gaps = 103/525 (19%)

Query: 46  FSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLD 105
           +S+++  ++  + A+ LA L + +G+ V  + P  P LY         GAV   L +   
Sbjct: 1   YSYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFG 60

Query: 106 SATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCS 165
              +   L   EAK+                             L+T PE          
Sbjct: 61  PEPIRDRLELGEAKV-----------------------------LITTPEL--------- 82

Query: 166 VANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLN 225
                                 +E   P    DP  +++TSG+TG PKGV++ HR    +
Sbjct: 83  ----------------------YERTDPE---DPALLHFTSGTTGKPKGVLHVHRAVVAH 117

Query: 226 SLAQISRCDVRDMPVFLWTLDMFRCNG--------WCCTWAMAAVGGINVCIRTVSAKII 277
                   D+R   V+  T D     G              +    G         A+  
Sbjct: 118 YATARYVLDLRPDDVYWCTADPGWVTGTSYGIIAPLLNGVTLVVDEG------EFDAERW 171

Query: 278 FDSILIHKVTHLCGQPRILNMI-----ANASASDQNQLQRKVIIVIAGVLPTIEVLEQVA 332
           +  +   KVT     P  L M+       A+  D + L R +  V   + P  EV+    
Sbjct: 172 YGILEEEKVTVWYTAPTALRMLMRAGPELAARYDLSSL-RHIASVGEPLNP--EVVVWGE 228

Query: 333 N-FGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQ 391
              G  I   +  TE     I     P            M +   G+   +I+    +  
Sbjct: 229 KVLGMPIHDTWWQTETGAIMIAN--YPGIPVKP----GSMGRPLPGIEAAVIE----RDG 278

Query: 392 NTMKSVPHDGKTLGEVMFRAN--TVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQ 449
           + +  V   G+  GE+  +    ++  GY  N +    +F +GWY TGDLA R+ DGY  
Sbjct: 279 DGLTPVTGPGQV-GELALKPGWPSMFRGYLGNEERYASSFVDGWYLTGDLAYRDEDGYFW 337

Query: 450 MKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREA 509
              R  D+I +   ++   EVE+ L+ +P V EA V+GK D    E+  AFV L+ G E 
Sbjct: 338 FVGRADDVIKTAGHLVGPFEVESALMEHPAVAEAGVIGKPDPVAGEIVKAFVSLRPGFEP 397

Query: 510 SPE---ELVTFCGDELPSCMVPRAI-FFEDIPVNSTGKVQKFVLR 550
           S E   EL+TF    L + + PR I F +++P   +GK+ + +L+
Sbjct: 398 SEELRRELLTFARQRLGAAVAPREIHFVDNLPKTRSGKIMRRLLK 442

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score =  135 bits (342), Expect = 2e-34
 Identities = 86/315 (27%), Positives = 136/315 (43%), Gaps = 61/315 (19%)

Query: 198 DPISVNYTSGSTGDPKGVVYSHR-----GAYLNSLAQISRCDVRDMPVFL---WTLDMFR 249
           D  ++ YTSG+TG+PKGV+ +HR      A L  +  +S  D   +  FL      +   
Sbjct: 89  DLATLIYTSGTTGNPKGVMLTHRNLLAQAAALLEVIPLSPGD--RVLSFLPLAHVFEQ-- 144

Query: 250 CNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIAN---ASASD 306
                  +   + G       +     + + +   + T     PR+   I     A  + 
Sbjct: 145 ---RLGEYLPLSSGARVNFAESPET--LLEDLREVRPTVFFAVPRVWEKIYAGIEAKVAA 199

Query: 307 QNQLQRKVI----------IVIAG--VLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVR 354
              L+RK+             ++G   LP  EVLE     G  I   YG+TE  G A V 
Sbjct: 200 AGPLKRKLFRWALGGGRLRFAVSGGAPLPP-EVLEFFRALGIPILEGYGLTETSGVATVN 258

Query: 355 QWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTV 414
           +                   R G     + GV+V+       +  D    GE++ R   V
Sbjct: 259 RPG---------------DIRIGTVGKPLPGVEVR-------IAED----GEILVRGPNV 292

Query: 415 MLGYFKNPKATEEAF-RNGWYHTGDLAVRNPDGYVQMKDRRKDIII-SGAEIISSLEVEA 472
           M GY+KNP+AT EA   +GW HTGD+   + DG++ + DR+KD+I+ +G + I+   +E 
Sbjct: 293 MKGYYKNPEATAEALDEDGWLHTGDIGRLDEDGFLVITDRKKDLIVTAGGKNIAPQPIEN 352

Query: 473 VLLSNPKVLEAAVVG 487
            L ++P + +A VVG
Sbjct: 353 ALKASPYISQAVVVG 367

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score =  134 bits (340), Expect = 3e-34
 Identities = 79/216 (36%), Positives = 109/216 (50%), Gaps = 21/216 (9%)

Query: 342 YGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVK-QQNTMKSVPHD 400
           YGMTE L     R    +GE             R G   L + GV+ +        VPHD
Sbjct: 273 YGMTETLITLSTRA---DGE------------RRPGWVGLPLAGVETRLVDEDGGPVPHD 317

Query: 401 GKTLGEVMFRANTVMLGYFKNPKATEEAFR-NGWYHTGDLAVRNPDGYVQMKDRRK-DII 458
           G+T+GE+  R  T+  GY   P AT  AF  +GW+ TGD+AV +PDG  ++  R   D+I
Sbjct: 318 GETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIVGRESTDLI 377

Query: 459 ISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFC 518
            SG   I + E+E  LL +P V EAAVVG  DD L +  VA+V      + + +EL+ F 
Sbjct: 378 KSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYV--VGADDVAADELIDFV 435

Query: 519 GDELPSCMVPRAI-FFEDIPVNSTGKVQKFVLRGKV 553
             +L     PR + F + +P N+ GKV K  L  + 
Sbjct: 436 AQQLSVHKRPREVRFVDALPRNAMGKVLKKQLLSEG 471

Length = 471

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score =  134 bits (338), Expect = 4e-34
 Identities = 113/390 (28%), Positives = 163/390 (41%), Gaps = 37/390 (9%)

Query: 176 DYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDV 235
           D  D    GK    +       DPI + +TSG+TG PK V+++H    +  L+ +    +
Sbjct: 63  DLRDRFSRGKPKAIVADETRADDPILLYFTSGTTGLPKLVLHTHVSYPVGHLSTMYWIGL 122

Query: 236 RDMPVFL------WTLDMFRCNGWCCTWA----MAAVGGINVCIRTVSAKIIFDSILIHK 285
           +   + L      W       + W   +A     A V GIN       A+    ++    
Sbjct: 123 QPGDIHLNISSPGWAK-----HAWSSFFAPWNAGATVFGINY--PRFDARRYLGALEKFG 175

Query: 286 VTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQV-ANFGFNIRHAYGM 344
           VT  C  P +  M      +  +   R+   V AG     EV+E+V   +G  IR  YG 
Sbjct: 176 VTTFCAPPTVWRMFIQQDLAQYDVRLREA--VSAGEPLNPEVIERVKKAWGLTIRDGYGQ 233

Query: 345 TEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTL 404
           TE          +     S       M +   G   +L+     +   T   +  D   L
Sbjct: 234 TETTAMIGNSPGQKVKPGS-------MGRPLPGYRVVLLDDEGKEIPVTEGEIALD---L 283

Query: 405 GEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEI 464
           G+   R   +MLGY  +P+ T  AFR G+Y TGD A R+ DGY+    R  D+  S    
Sbjct: 284 GD---RPIGLMLGYMGDPEKTAAAFRGGYYRTGDKAYRDEDGYLWFVGRADDVFKSSDYR 340

Query: 465 ISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPE---ELVTFCGDE 521
           IS  EVE+ LL +P V EAAVV   D     VP A++ LK G E S E   EL     + 
Sbjct: 341 ISPFEVESALLEHPAVAEAAVVPSPDPIRLAVPKAYIVLKPGYEPSRELALELFAHVRER 400

Query: 522 LPSCMVPRAI-FFEDIPVNSTGKVQKFVLR 550
           L      R I F  ++P   +GK+++  LR
Sbjct: 401 LAPYKRIRRIEFVGELPKTISGKIRRVELR 430

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score =  134 bits (339), Expect = 6e-34
 Identities = 143/539 (26%), Positives = 212/539 (39%), Gaps = 65/539 (12%)

Query: 21  TPIDFLERAAHVYGDATSII--YGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAP 78
           T  + L RAA    DA +++     +R ++ +       +A+ L    +     VA +AP
Sbjct: 2   TVFEMLRRAATRAPDACALVDPARGLRLTYSELRARVEGVAARLHARGVRPQQRVAVVAP 61

Query: 79  NIPALYKLHFAVPMAGAVLSALNTRLDSATLASILR--QLEAKIIFVDYQFVEVVQNALD 136
           N         A+   GAV + +N RL  A +A +++  ++ A +I VD Q ++ +  +  
Sbjct: 62  NSVDAVIALLALHRLGAVPALMNPRLKPAEIAELIKRGEMTAAVIAVDAQVMDAIFQSG- 120

Query: 137 ILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHE 196
                                        +A     G L      E      E      E
Sbjct: 121 ------------------------SGVRVLA----LGDLVGLGEPESAGPPIEDPPREPE 152

Query: 197 CDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVR--DMPVFLWTLDMFRCNGWC 254
             P  V YTSG+TG PKG V   R A    L   ++  +R     V L  + ++   G+ 
Sbjct: 153 -QPAFVFYTSGTTGLPKGAVIPQRAAESRVLFMSTQAGLRHGRHNVVLGLMPLYHVIGFF 211

Query: 255 CTWAMA-AVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRK 313
                A A+ G  V +           I   +VT L   P  L+ +A A+     +L   
Sbjct: 212 AVLVAALALDGTYVVVEEFDPADALKLIEQERVTSLFATPTHLDALAAAAEGAPLKLDSL 271

Query: 314 VIIVIAGVLPTIEVLEQVANF----GFNIRHAYGMTEVLGPAIVRQWKPEGE-SSALDHE 368
             +  AG      VLE+V         NI   YG TE +    +R  +   E       E
Sbjct: 272 EHVTFAGATMPDAVLERVNQHLPGEKVNI---YGTTEAMNSLYMRDPRTGTEMRPGFFSE 328

Query: 369 HEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGE-VMFRANTVMLGYFKNPKATEE 427
             + +     +  L  G +                 GE V+  A+    GY   P+AT E
Sbjct: 329 VRIVRIGGSPDEALPNGEE-----------------GELVVAAADATFTGYLNQPQATAE 371

Query: 428 AFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVG 487
             ++GWY T D+AV +P G V++  R  D+IISG E I   EVE VL   P V E  V+G
Sbjct: 372 KLQDGWYRTSDVAVVDPSGTVRILGRVDDMIISGGENIHPSEVERVLGRAPGVTEVVVIG 431

Query: 488 KVDDQLKEVPVAFVKLKEGREASPEELVTFCGD-ELPSCMVPRAIFFED-IPVNSTGKV 544
             D++  +   A V  +EG   S + L TFC   EL     PR  FF D +P N+  KV
Sbjct: 432 LPDERWGQSVTACVVPREGETLSADALDTFCRASELADFKRPRRYFFLDELPKNAMNKV 490

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score =  134 bits (340), Expect = 8e-34
 Identities = 139/542 (25%), Positives = 198/542 (36%), Gaps = 51/542 (9%)

Query: 29  AAHVYG--DATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKL 86
            AH     DA ++I      S  +   +  +LA+ LA   + RGD VA   PN      L
Sbjct: 17  DAHARARPDAVALIDEDRPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVL 76

Query: 87  HFAVPMAGAVLSALNTRLDSATLASILRQLEAKII-----FVDYQFVEVVQNALDILSPN 141
             A    GA + A+NTR  S  +A IL +  A+ +     F    F  ++          
Sbjct: 77  FLACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPP----- 131

Query: 142 HKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPIS 201
              D  P L  I   D    +T + A           D      A      P+       
Sbjct: 132 ---DALPPLRAIAVVDDAADATPAPAPGARVQLFALPDPAPPAAAGERAADPD---AGAL 185

Query: 202 VNYTSGSTGDPKGVVYSHRGAYLNSLAQISR-CDVRDMPVFLWTLDMFRCNGWCCTWAMA 260
           +  TSG+T  PK V++      L     I+R        V L  L      G+       
Sbjct: 186 LFTTSGTTSGPKLVLHRQA-TLLRHARAIARAYGYDPGAVLLAALPFCGVFGFSTLLGAL 244

Query: 261 AVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAG 320
           A G   VC     A     ++  H+VTH  G   +L  I + +    +      +   A 
Sbjct: 245 AGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTAGERAD-FPSARLFGFAS 303

Query: 321 VLPTI-EVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLN 379
             P + E+       G  +   YG +EV   A+V         S            EG  
Sbjct: 304 FAPALGELAALARARGVPLTGLYGSSEVQ--ALVALQPATDPVSV---------RIEG-- 350

Query: 380 NLLIQGVDVKQQNTMKSV-PHDGKTL-----GEVMFRANTVMLGYFKNPKATEEAFR-NG 432
                G     +  +++  P DG  L     GE+  RA ++M GY  NP AT  A   +G
Sbjct: 351 ----GGRPASPEARVRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDG 406

Query: 433 WYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQ 492
           ++ TGDL     DG    + R  D +  G  +++  E+E  L + P V  A VVG     
Sbjct: 407 YFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVG-ATRD 465

Query: 493 LKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVP-RAIFFEDIPVNSTG---KVQKFV 548
            K VPVAFV   +G       L+  C + L    VP R    E  PV  +    K+QK  
Sbjct: 466 GKTVPVAFVIPTDGASPDEAGLMAACREALAGFKVPARVQVVEAFPVTESANGAKIQKHR 525

Query: 549 LR 550
           LR
Sbjct: 526 LR 527

Length = 540

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  130 bits (328), Expect = 3e-32
 Identities = 140/548 (25%), Positives = 220/548 (40%), Gaps = 57/548 (10%)

Query: 18  VPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMA 77
             LT  D L   A  Y D  ++I G  R S+ +  Q   +LA+ L +L I  GD V    
Sbjct: 28  RTLT--DILTDHAARYPDRIAVIDGERRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQL 85

Query: 78  PNIPALYKLHFAVPMAGA--VLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNAL 135
           PN+   Y   FA+   G   VL+  + R  ++ L +   Q+EA ++ V  Q         
Sbjct: 86  PNVAEFYITFFALLRLGVAPVLALPSHR--ASELGAFASQIEAALLIVARQH-------- 135

Query: 136 DILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNH 195
                    D  P    +    H       VA             L      F    P  
Sbjct: 136 ------SGFDYRPFARELVAK-HPTLRHVIVAGE-AEHPSVLEAALCHPAGLFTPAPPAD 187

Query: 196 ECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCC 255
             +      + G+TG PK +  +H   Y +  A    C      V+L  L          
Sbjct: 188 AGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNFPLSS 247

Query: 256 TWAMAA--VGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRK 313
             A+     GG  V     S ++ F  I  H VT     P + ++   A+  ++  L   
Sbjct: 248 PGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWERADLSSL 307

Query: 314 VIIVIAGVLPTIEVLEQV-ANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMT 372
            ++ + G   +  +  +V A  G  ++  +GM E L              + LD   E+ 
Sbjct: 308 RLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEGLV-----------NYTRLDDPPEII 356

Query: 373 KHREGLNNLLIQGVDVKQQNTMKSVPHDGKTL-----GEVMFRANTVMLGYFKNPKATEE 427
            H         QG  +   + ++ V  DG  +     GE++ R    + GY++ P+    
Sbjct: 357 IH--------TQGRPLSPDDEVRVVDADGNPVAPGEVGELLTRGPYTIRGYYRAPEHNAR 408

Query: 428 AFR-NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVV 486
           AF  +G+Y +GDL  R+PDGY+ ++ R KD I  G E I++ EVE +LL +P V +AA+V
Sbjct: 409 AFDADGFYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDAALV 468

Query: 487 GKVDDQLKEVPVAFVKLKEGREASPEELVTF---CGDELPSCMVP-RAIFFEDIPVNSTG 542
              D+ L E   AF+ +KE       +L  F    G  L +  +P R  F + +P+ + G
Sbjct: 469 AMPDELLGEKSCAFIVVKE-PPLRAAQLRRFLRERG--LAAFKLPDRIEFVDSLPLTAVG 525

Query: 543 KVQKFVLR 550
           K+ K  LR
Sbjct: 526 KIDKKALR 533

Length = 542

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  125 bits (317), Expect = 8e-32
 Identities = 98/370 (26%), Positives = 148/370 (40%), Gaps = 49/370 (13%)

Query: 205 TSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAMAAVGG 264
           T G+TG PK   +SHR    N+        +    V L  L +F   G     A+     
Sbjct: 10  TGGTTGAPKLARHSHRNEVANAWMAALLSGLGPGDVLLNGLPLFHVGG-----AIVT--- 61

Query: 265 INVCIRTVS--AKIIFDSILI----------------HKVTHLCGQPRILNMIANASASD 306
               +  ++  A ++  +                   ++VT L   P +L  +      D
Sbjct: 62  ---GLAPLARGATVVLPTPSGFRNPAVVANFWKIVERYRVTLLSAVPTVLAALLQVPLGD 118

Query: 307 QNQLQRKVIIVIAGVLPTIEVLEQV-ANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSAL 365
            +    +  +  A  LP  EV  +  A  G  +   YGMTE  G             SA+
Sbjct: 119 ADISSLRYALTGAAPLPV-EVARRFEAVTGVPVVEGYGMTEGTG------------VSAI 165

Query: 366 DHEH-EMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTL--GEVMFRANTVMLGYFKNP 422
           +           GL  L    V V + +   ++  D      G +  R   V  GY  + 
Sbjct: 166 NPRGGPRRPGSVGLR-LPYTRVRVAKLDAGGALGRDCAPGEVGVLAIRGPNVFPGYLNDA 224

Query: 423 KATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLE 482
                   +GW +TGDL   + DGY+ +  R KD+II G   I    +E  LL +P V  
Sbjct: 225 HNAGARLEDGWLNTGDLGRIDADGYLWLTGRAKDLIIRGGHNIDPQMIEEALLRHPAVAL 284

Query: 483 AAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPS-CMVPRAIFFED-IPVNS 540
           AA VG+ D    E+PVA+V+LK G   +  EL+ F    +P    VP+AI+  D +P+ +
Sbjct: 285 AAAVGRPDAYAGELPVAYVQLKPGATVTEGELLAFVKARIPERAAVPKAIYIIDALPLTA 344

Query: 541 TGKVQKFVLR 550
            GK+ K  LR
Sbjct: 345 VGKIFKPRLR 354

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score =  129 bits (325), Expect = 8e-32
 Identities = 132/558 (23%), Positives = 232/558 (41%), Gaps = 92/558 (16%)

Query: 29  AAHVYGDATSIIYGTVRF--SWRQTHQICLKLASALAQ-LKISRGDIVAAMAPNIPALYK 85
           + H +   T++I  +  F  S+ +   +   +A+ L   + + +GD+V  + PN      
Sbjct: 48  SHHNHNGDTALIDSSTGFSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPV 107

Query: 86  LHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCD 145
           +  AV   G +++ +N       +   +      + F                SP +   
Sbjct: 108 IFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFT---------------SPENVEK 152

Query: 146 KAPL---LVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEM--GKADFEMMQPNHECDPI 200
            +PL   ++ +PE             +F S  +++    E+     DF       + D  
Sbjct: 153 LSPLGVPVIGVPE-----------NYDFDSKRIEFPKFYELIKEDFDFVPKPVIKQDDVA 201

Query: 201 SVNYTSGSTGDPKGVVYSHRG---------AYLNSLAQISRCDVRDMPVFLWTLDMFRCN 251
           ++ Y+SG+TG  KGVV +HR           +  S  +    D     V+L  L MF   
Sbjct: 202 AIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSD----NVYLAALPMFHIY 257

Query: 252 GWCCTWAMAAVGGIN-----VCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASD 306
           G     ++  VG ++     V +R   A  +   I   KVTH    P IL  +   +   
Sbjct: 258 GL----SLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGV 313

Query: 307 QNQLQRKVIIVIAGVLPT--------IEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKP 358
             ++ + +  V  G  P         ++ L  V     +    YGMTE            
Sbjct: 314 CGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHV-----DFIQGYGMTE------------ 356

Query: 359 EGESSALDHEHEMTKHREGLNN--LLIQGVDVK--QQNTMKSVPHDGKTLGEVMFRANTV 414
              S+A+      T+     ++  LL   +  K    +T   +P      GE+  +   V
Sbjct: 357 ---STAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNC--GELWIQGPGV 411

Query: 415 MLGYFKNPKATE-EAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAV 473
           M GY  NPKAT+    ++GW  TGD+A  + DGY+ + DR K+II      I+  ++EAV
Sbjct: 412 MKGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAV 471

Query: 474 LLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDEL-PSCMVPRAIF 532
           L+S+P++++AAV    D +  E+PVAFV  ++G   S E ++ +   ++ P   V + +F
Sbjct: 472 LISHPEIIDAAVTAVPDKECGEIPVAFVVRRQGSTLSQEAVINYVAKQVAPYKKVRKVVF 531

Query: 533 FEDIPVNSTGKVQKFVLR 550
            + IP +  GK+ +  L+
Sbjct: 532 VQSIPKSPAGKILRRELK 549

Length = 560

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score =  128 bits (323), Expect = 1e-31
 Identities = 137/563 (24%), Positives = 247/563 (43%), Gaps = 74/563 (13%)

Query: 20  LTPIDFLERAAHVYGDATSIIYGTV--RFSWRQTHQICLKLASALAQLKISRGDIVAAMA 77
           LT  DF+ + A +Y D  + +        ++ +  +   + A AL  L + +G +V  + 
Sbjct: 28  LTLPDFVLQDAELYADKVAFVEAVTGKAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVL 87

Query: 78  PNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEA---KIIFVDYQFVEVVQNA 134
           PN+     +   +  AG V S  N    +A  + I +Q EA   K+I  +      V   
Sbjct: 88  PNVAEYGIVALGIMAAGGVFSGANP---TALESEIKKQAEAAGAKLIVTNDTNYGKV--- 141

Query: 135 LDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGK--ADFEMMQ 192
                   K    P++V   E                 G++++ +LLE      D    +
Sbjct: 142 --------KGLGLPVIVLGEEKI--------------EGAVNWKELLEAADRAGDTSDNE 179

Query: 193 PNHECDPISVNYTSGSTGDPKGVVYSHRGAYLN-----------SLAQISRCDVRDMPVF 241
              + D  ++ ++SG+TG  KGV+ +HR    N            + Q+    +  +P F
Sbjct: 180 EILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGL--IPFF 237

Query: 242 LWTLDMFRCNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHL-CGQPRILNMIA 300
                ++   G CC  A     G  V +     +   ++++  +V+      P ILN++ 
Sbjct: 238 ----HIYGITGICC--ATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVK 291

Query: 301 NASAS--DQNQLQRKVIIVIAGVLPTIEVLEQVANF-GFNIRHAYGMTEVLGPAIVRQWK 357
           N      D ++L+ + I+  A  L    +    A F G  ++ AYG+TE     +     
Sbjct: 292 NPIVEEFDLSKLKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGDP 351

Query: 358 PEGESSALDHEHEMTKHREG--LNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVM 415
            +G   A        K+  G  L NL ++ +D    +T +S+P +  T GE+  R+  VM
Sbjct: 352 EKGHGIA-------KKNSVGFILPNLEVKFID---PDTGRSLPKN--TPGELCVRSQCVM 399

Query: 416 LGYFKNPKATEEAF-RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVL 474
            GY+ N + T+     +GW HTGD+   + DG + + DR K++I      ++  E+EA+L
Sbjct: 400 QGYYNNKEETDRTIDEDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAIL 459

Query: 475 LSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFE 534
           L++P V +AAVV   D++  E+P A V +    + S E+++ F    +      R + F 
Sbjct: 460 LTHPSVEDAAVVPLPDEEAGEIPAACVVINPKAKESEEDILNFVAANVAHYKKVRVVQFV 519

Query: 535 D-IPVNSTGKVQKFVLRGKVNAT 556
           D IP + +GK+ + +L+ K+ + 
Sbjct: 520 DSIPKSLSGKIMRRLLKEKMLSI 542

Length = 546

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score =  127 bits (322), Expect = 2e-31
 Identities = 55/143 (38%), Positives = 89/143 (62%), Gaps = 2/143 (1%)

Query: 405 GEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDII-ISGAE 463
           GE++ R  +++ GY+  P+AT EA R+GW HTGD+   +  G++    RRK+++ ++G  
Sbjct: 415 GEIVVRTPSLLKGYWNKPEATAEALRDGWLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMS 474

Query: 464 IISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELP 523
           +  S EVEA+L  +P VL +AVVG+ D    +VPVAFV+LK G + +   L  +C + + 
Sbjct: 475 VFPS-EVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPGADLTAAALQAWCRENMA 533

Query: 524 SCMVPRAIFFEDIPVNSTGKVQK 546
              VP     + +P+ +TGKV+K
Sbjct: 534 VYKVPEIRIVDALPMTATGKVRK 556

Length = 567

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score =  127 bits (321), Expect = 3e-31
 Identities = 119/517 (23%), Positives = 189/517 (36%), Gaps = 139/517 (26%)

Query: 47  SWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDS 106
           S+++  +  L + S L  L +  GD +   A N P       A      V+  L   L  
Sbjct: 7   SYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPLYDTLGE 66

Query: 107 ATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSV 166
             +  IL + E  I+F D         A+ + S                           
Sbjct: 67  EAIEYILNETEISIVFCD---------AVKVYS--------------------------- 90

Query: 167 ANNFPSGSLDYNDLLEMGKAD-FEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLN 225
                     + +L E+GK +      P  E D  ++ YTSG+TG+PKGV+ +H     N
Sbjct: 91  ----------FEELEELGKKNKVPPTPPKPE-DLATIMYTSGTTGNPKGVMLTHG----N 135

Query: 226 SLAQISRCDVRDMPVFLWTLD----------MF-RCNGWCCTWAMAAVGGINVCIRTVSA 274
            +A ++  +   +P F+   D          +F R     C +    +G  +   R    
Sbjct: 136 IVAGVAGINKI-VPEFIGPTDVYISYLPLAHIFERVVENVCLYIGGRIGYYSGDTRG--- 191

Query: 275 KIIFDSILIHKVTHLCGQPRILNMI-----AN--------------ASASDQNQLQR--- 312
             +   I   K T   G PR+L+ I     A               A       L+R   
Sbjct: 192 --LKGDIKELKPTVFVGVPRVLDRIYKGILAKVNAKGGLKRTLFNFAYNYKLAALRRGHG 249

Query: 313 --------------------KVIIVIAGVLP-TIEVLEQV-ANFGFNIRHAYGMTEVLGP 350
                               +V ++++G  P + +  E +    G  +   YG+TE    
Sbjct: 250 YASPLWDKLVFKKIKAALGGRVRLMLSGGAPLSPDTQEFLRVALGCPVLQGYGLTETCAG 309

Query: 351 AIVRQWKPEGESSALDHEHEMTKHREG--LNNLLIQGVDVKQQN--TMKSVPHDGKTLGE 406
                         L    + T    G  L    I+ VDV +         P      GE
Sbjct: 310 G------------TLSDPGDTTTGHVGPPLPCCEIKLVDVPEMGYFAKDDPPR-----GE 352

Query: 407 VMFRANTVMLGYFKNPKATEEAFR-NGWYHTGDLAVRNPDGYVQMKDRRKDII-ISGAEI 464
           +  R   V  GY+KNP+ T EAF  +GW+HTGD+    PDG +++ DR+K++  +S  E 
Sbjct: 353 ICIRGPNVFKGYYKNPEKTAEAFDEDGWFHTGDIGEWLPDGTLKIIDRKKNLFKLSQGEY 412

Query: 465 ISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFV 501
           ++  ++E +  S+P V +  V G   D LK   VA V
Sbjct: 413 VALEKLENIYKSSPLVDQICVYG---DSLKSFLVAIV 446

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score =  126 bits (319), Expect = 4e-31
 Identities = 55/149 (36%), Positives = 82/149 (55%), Gaps = 1/149 (0%)

Query: 405 GEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEI 464
           GE+  R   VM GY+  P+ T EAFR+GW HTGD+A  + DG+  + DR+KD+I++G   
Sbjct: 366 GEICVRGPLVMDGYWNRPEETAEAFRDGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFN 425

Query: 465 ISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPS 524
           +   EVE VL  +P V + AV+G  D++  E   A V L+ G      EL     +   S
Sbjct: 426 VFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAAVDAAELQAHVKERKGS 485

Query: 525 CMVPRAI-FFEDIPVNSTGKVQKFVLRGK 552
              P+ + F + +P+ + GK  K  LR +
Sbjct: 486 VHAPKQVDFVDSLPLTALGKPDKKALRAR 514

Length = 524

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score =  126 bits (318), Expect = 4e-31
 Identities = 131/547 (23%), Positives = 210/547 (38%), Gaps = 53/547 (9%)

Query: 24  DFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPAL 83
             LE AA    DAT++++     ++    +  L LAS L  L ++RG+ VA         
Sbjct: 4   HLLEDAAARLPDATALVHHDRTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLET 63

Query: 84  YKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHK 143
               F   +AG V   +N  L +  +A IL     +++         V ++  +   +  
Sbjct: 64  VTAMFGAALAGGVFVPINPLLKAEQVAHILADCNVRLL---------VTSSERLDLLHPA 114

Query: 144 CDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHEC---DPI 200
                 L T+       P+  S  +        +  LL +G AD     P H     D  
Sbjct: 115 LPGCHDLRTLIIVG--DPAHASEGHPGEE-PASWPKLLALGDAD-----PPHPVIDSDMA 166

Query: 201 SVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAMA 260
           ++ YTSGSTG PKGVV SHR     + +  +  + R     L  L +    G+       
Sbjct: 167 AILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYGFNQLTTAF 226

Query: 261 AVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANAS--ASDQNQLQRKVIIVI 318
            VG   V    +  + +  ++  H +T L   P +   +A      S    L+   +   
Sbjct: 227 YVGATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDWPESAAPSLRY--LTNS 284

Query: 319 AGVLPTIEVLEQVANFGF-NIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREG 377
            G +P   +    +      +   YG+TE               S+ L  E E+ +  + 
Sbjct: 285 GGAMPRATLSRLRSFLPNARLFLMYGLTEAF------------RSTYLPPE-EVDRRPDS 331

Query: 378 LNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFR-----NG 432
           +    I   +V       S    G+  GE++ R   V +GY+ +P+ T E FR      G
Sbjct: 332 IGKA-IPNAEVLVLREDGSECAPGEE-GELVHRGALVAMGYWNDPEKTAERFRPLPPFPG 389

Query: 433 WYHTGDLAV-------RNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAV 485
             H  +LAV       R+ +G++    RR ++I +    +S  EVE V  +   V EA  
Sbjct: 390 ELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVA 449

Query: 486 VGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKV 544
            G  D  L +  V  V    G E     L+  C   LP+ MVP  I     +P N+ GK+
Sbjct: 450 FGVPDPTLGQAIVLVVTPPGGEELDRAALLAECRARLPNYMVPALIHVRQALPRNANGKI 509

Query: 545 QKFVLRG 551
            +  L  
Sbjct: 510 DRKALAK 516

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score =  122 bits (308), Expect = 1e-29
 Identities = 132/552 (23%), Positives = 214/552 (38%), Gaps = 69/552 (12%)

Query: 19  PLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAP 78
           PLT  D L   A  Y DA +II G  ++S+R+  Q    LA+ L +L I +GD      P
Sbjct: 24  PLT--DILRDQAARYPDAIAIICGNRQWSYRELDQRADNLAAGLTKLGIKQGDTAVVQLP 81

Query: 79  NIPALYKLHFAVPMAGAV-LSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDI 137
           NI   Y + FA+   G   + AL +    + L +   Q+E  +  +D        +    
Sbjct: 82  NIAEFYIVFFALLKLGVAPVLALFSH-RKSELTAYASQIEPALYIIDRAHSLFDYDDF-- 138

Query: 138 LSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHEC 197
                    A  L +             VA       L     LE               
Sbjct: 139 ---------ARQLQS----KLPTLRNIIVAGQTGEAELF--LWLESPAEPV----KFPPT 179

Query: 198 DPISVNY---TSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWC 254
               V +   + GSTG PK +  +H   Y +    +  C +     +L  L         
Sbjct: 180 KSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAH----- 234

Query: 255 CTWAMAAVGGINV-----CI---RTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASD 306
             + +++ G + V     C+      S    F  I  HKVT     P  + +   A++  
Sbjct: 235 -NYPLSSPGALGVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKS 293

Query: 307 QNQLQRKVIIVIAGVLPTIEVLEQV-ANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSAL 365
           +  L    ++ + G   +     +V A FG  ++  +GM E L              + L
Sbjct: 294 RADLSSLKLLQVGGAKFSAAAARRVPAVFGCQLQQVFGMAEGLV-----------NYTRL 342

Query: 366 DHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTL-----GEVMFRANTVMLGYFK 420
           D   E+            QG  +   + ++ V   G  +     G ++ R      GY+K
Sbjct: 343 DDPAEIIFT--------TQGRPMSPDDEVRVVDDHGNPVAPGETGMLLTRGPYTFRGYYK 394

Query: 421 NPKATEEAF-RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPK 479
            P+    AF   G+Y+TGDL    P+GY+ +  R KD I  G E I++ E+E +LL++P 
Sbjct: 395 APEHNAAAFDAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPA 454

Query: 480 VLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVP-RAIFFEDIPV 538
           V +AA+V   D+ L E   AF+ +++    + +         L    +P R  F + +P+
Sbjct: 455 VHDAALVSMPDELLGEKSCAFIVVRDPALKAAQLRRFLRERGLAEYKLPDRVEFVDSLPL 514

Query: 539 NSTGKVQKFVLR 550
            + GKV K  LR
Sbjct: 515 TAVGKVDKKALR 526

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score =  122 bits (308), Expect = 1e-29
 Identities = 130/549 (23%), Positives = 223/549 (40%), Gaps = 100/549 (18%)

Query: 44  VRFSWRQTHQICLKLASALAQ-LKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNT 102
           V++S+R+   +  K A+ L+    + RGD VA + P +P  + ++ A    G V      
Sbjct: 40  VKWSFRELGSLSRKAANVLSGACGLQRGDRVAVILPRVPEWWLVNVACIRTGLVFIPGTI 99

Query: 103 RLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPS 162
           +L +  +   L+  +AK I       + +  A+D ++      K  LLV+    D     
Sbjct: 100 QLTAKDILYRLQASKAKCIVTS----DELAPAVDSIASECPSLKTKLLVSEHSRD----- 150

Query: 163 TCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGA 222
                     G L++ +LL+    +   ++   + +P+++ +TSG+TG PK   +SH   
Sbjct: 151 ----------GWLNFKELLKEASTEHTCVKTKSQ-EPMAIYFTSGTTGFPKMAEHSH--- 196

Query: 223 YLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCT---WAMAAVGGI------NVCIRT-- 271
             +SL    + + R   + L   D+     W  +   W  AA+  +        C+    
Sbjct: 197 --SSLGLGLKVNGRYW-LDLTPSDIM----WNMSDTGWIKAAIWSLFSPWIQGACVFVHH 249

Query: 272 ---VSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVL 328
                 K+I  ++  + +T  C  P +  M+                           V 
Sbjct: 250 LPRFDPKVILQTLSKYPITTFCSAPTVYRML---------------------------VQ 282

Query: 329 EQVANFGF-NIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVD 387
           + + ++ F ++RH     E L P ++ QWK     + LD      +   GL     +G+ 
Sbjct: 283 QDLTSYKFKSLRHCVTGGEPLNPEVLEQWK---AQTGLDLYEGYGQTETGLICANFKGMK 339

Query: 388 VKQQNTMK-SVPHD-------GKTL-----GEVMFRANTV-----MLGYFKNPKATEEAF 429
           +K  +  K S P+D       G  L     G++  R            Y  NP+ T    
Sbjct: 340 IKPGSMGKASPPYDVQIIDDNGNVLPPGTEGDIGIRVKPTRPFCLFSCYVDNPEKTAATI 399

Query: 430 RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKV 489
           R  +Y TGD  + + DGY     R  D+I S    I   EVE+ L+ +P V+E+AVV   
Sbjct: 400 RGDFYITGDRGIMDEDGYFWFVGRADDVINSSGYRIGPFEVESALIEHPAVVESAVVSSP 459

Query: 490 DDQLKEVPVAFVKLKEGREAS-PEELVTFCGDELPSCMV----PRAI-FFEDIPVNSTGK 543
           D    EV  AFV L     +  PE+L     + + S       PR + F +++P   TGK
Sbjct: 460 DPIRGEVVKAFVVLAPQFLSHDPEQLTKELQEHVKSVTAPYKYPRKVEFVQELPKTITGK 519

Query: 544 VQKFVLRGK 552
           +++  LR K
Sbjct: 520 IKRNELRDK 528

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score =  122 bits (307), Expect = 2e-29
 Identities = 142/568 (25%), Positives = 222/568 (39%), Gaps = 91/568 (16%)

Query: 24  DFLERAAHVYGDATSIIY---GTVR--FSWRQTHQICLKLASALAQLKISRGDIVAAMAP 78
           D ++  A    D  ++I+         F++        K A+    L I +GD V     
Sbjct: 21  DVVDAYADEEPDKLALIWCDDDGEEKIFTFGDLKDYSNKAANFFKALGIGKGDTVMLTLK 80

Query: 79  N-------IPALYKL-HFAVPMAGAVLSALNT--RLDSATLASILRQLEAKIIFVDYQFV 128
                   + AL+K+   A+P A  +L+A +   R+++A +  I+   E  +        
Sbjct: 81  RRYEFWFSMLALHKIGAIAIP-ATHMLTAKDIVYRIEAAGIKMIVCIGEDGVP------- 132

Query: 129 EVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADF 188
           E +  A        +C    LLV              V +  P G +D++  +E    DF
Sbjct: 133 EHIDEAAP------ECGSPTLLV-------------LVGDPVPEGWIDFDKEIENASPDF 173

Query: 189 EMMQPNHEC---DPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRC----DVRDMPVF 241
           E    N      D + V +TSG+TG PK V + H       L  I       +V++  + 
Sbjct: 174 ERPTGNDATCNDDILLVYFTSGTTGMPKMVEHDH----TYPLGHIVTAKYWQNVKEGGLH 229

Query: 242 LWTLDMFRCNGWC-CTWAMAA---VGGINVCI---RTVSAKIIFDSILIHKVTHLCGQPR 294
           L   D     GW    W       + G  V +        K + + I  + VT  C  P 
Sbjct: 230 LTVAD----TGWGKAVWGKLYGQWIAGAAVFVYDYDKFDPKNLLEKIEKYGVTTFCAPPT 285

Query: 295 ILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVANF-GFNIRHAYGMTE-VLGPAI 352
           I   +     S  + L        AG     EV        G  +   +G TE  L  A 
Sbjct: 286 IYRFLIKEDLSKYD-LSSLRYCTTAGEPLNPEVFNTFKEKTGIKLMEGFGQTETTLTIAT 344

Query: 353 VRQWKPEGESSALDHEHEMTKHREGLNNLLI----QGVDVKQQNTMKSVPHDGKTLGEVM 408
               +P+  S        M K   G +  +I    +  +V ++  +     DGK LG  +
Sbjct: 345 FPWMEPKPGS--------MGKPSPGYDIDIIDPDGKSCEVGEEGEIVIRTSDGKPLG--L 394

Query: 409 FRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSL 468
           F       GY+++P+ T E + +G+YHTGD A  + DGY+    R  D+I S    I   
Sbjct: 395 FM------GYYRDPERTAEVWHDGYYHTGDTAWMDEDGYLWFVGRADDLIKSSGYRIGPF 448

Query: 469 EVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPE---ELVTFCGDELPSC 525
           EVE+ L+ +P VLE AV G  D    +V  A + L +G E S E   EL           
Sbjct: 449 EVESALIQHPAVLECAVTGVPDPIRGQVVKATIVLTKGYEPSEELKKELQDHVKKVTAPY 508

Query: 526 MVPRAI-FFEDIPVNSTGKVQKFVLRGK 552
             PR I F +++P   +GK+++  +R K
Sbjct: 509 KYPRIIEFVDELPKTISGKIRRVEIREK 536

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score =  120 bits (302), Expect = 6e-29
 Identities = 147/575 (25%), Positives = 229/575 (39%), Gaps = 118/575 (20%)

Query: 24  DFLERAAHVYGDATSII--YGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIP 81
           D+ ++ A    D  +++  +G   +++        +LA+ L    I  GD VA   P   
Sbjct: 27  DYWQQTARAMPDKIAVVDNHGA-SYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWC 85

Query: 82  ALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPN 141
               ++ A    GAV   L      A L  +L + +AK+ F    F +     +D++ P 
Sbjct: 86  EFTIIYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQT--RPVDLILPL 143

Query: 142 HKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQ---PNHECD 198
              ++ P L  I   D   P+T          SL  + ++     D+E +      H  +
Sbjct: 144 Q--NQLPQLQQIVGVDKLAPAT---------SSLSLSQIIA----DYEPLTTAITTHGDE 188

Query: 199 PISVNYTSGSTGDPKGVVYSHRG------AYLNSLAQISRCDVRDMPV-------FLW-- 243
             +V +TSG+ G PKGV+ +H        AY   L  ++  DV  MP        FL   
Sbjct: 189 LAAVLFTSGTEGLPKGVMLTHNNILASERAYCARL-NLTWQDVFMMPAPLGHATGFLHGV 247

Query: 244 -----------TLDMFR-------CNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHK 285
                       LD+F             CT  + A               I+D      
Sbjct: 248 TAPFLIGARSVLLDIFTPDACLALLEQQRCTCMLGA------------TPFIYD------ 289

Query: 286 VTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMT 345
                    +LN++     +D + L  +  +     +P  +V  +    G  +   YG T
Sbjct: 290 ---------LLNLL-EKQPADLSAL--RFFLCGGTTIPK-KVARECQQRGIKLLSVYGST 336

Query: 346 EVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTL- 404
           E    A+V           LD       H +G       GV++K       V    KTL 
Sbjct: 337 ESSPHAVVN----------LDDPLSRFMHTDGYA---AAGVEIK------VVDEARKTLP 377

Query: 405 ----GEVMFRANTVMLGYFKNPKATEEAFRN-GWYHTGDLAVRNPDGYVQMKDRRKDIII 459
               GE   R   V +GY   P+ T  A    GWY++GDL   +  GY+++  R+KDII+
Sbjct: 378 PGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGYIKITGRKKDIIV 437

Query: 460 SGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASP--EELVTF 517
            G E ISS EVE +LL +PK+ +A VV   D++L E   A+V LK     S   EE+V F
Sbjct: 438 RGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKA-PHHSLTLEEVVAF 496

Query: 518 -CGDELPSCMVP-RAIFFEDIPVNSTGKVQKFVLR 550
                +     P   +  + +P  ++GK+QKF+LR
Sbjct: 497 FSRKRVAKYKYPEHIVVIDKLPRTASGKIQKFLLR 531

Length = 547

>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated

 Score =  120 bits (303), Expect = 9e-29
 Identities = 128/553 (23%), Positives = 199/553 (35%), Gaps = 105/553 (18%)

Query: 24  DFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPAL 83
           D  E AA  + D  ++++     S+ + +    + A   A   + +GD+VA +  N P  
Sbjct: 41  DVFEEAAARHPDRPALLFEDQSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEY 100

Query: 84  YKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHK 143
                 +   GAV++ LNT+   A LA  L  ++AK + V  + VE  + A         
Sbjct: 101 LAAWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEA--------- 151

Query: 144 CDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLE----MGKADFEMMQPNHECDP 199
             +A L                   + P G  D             A    +      D 
Sbjct: 152 --RADLARPPRLWVAGG-----DTLDDPEGYEDLAAAAAGAPTTNPASRSGVTAK---DT 201

Query: 200 ISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISR-CDVRDMPVFLWTLDMFRCNGWCCTWA 258
               YTSG+TG PK  V SH   +L ++        +    V    L ++   G    W+
Sbjct: 202 AFYIYTSGTTGLPKAAVMSHM-RWLKAMGGFGGLLRLTPDDVLYCCLPLYHNTGGTVAWS 260

Query: 259 MAAVGGINVCI-RTVSAKIIFDSILIHKVTH------LCGQPRILNMIANASASDQNQLQ 311
                G  + + R  SA   +D +  ++ T       LC   R L    N      ++  
Sbjct: 261 SVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELC---RYL---LNQPPKPTDRDH 314

Query: 312 RKVIIVIAGVLPTI-----------EVLEQVA----NFGF----NIRHAYGMTEVLGP-- 350
           R  +++  G+ P I            +LE  A    N GF    N     G   +     
Sbjct: 315 RLRLMIGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFINVFNFDGTVGRVPLWLAHP 374

Query: 351 -AIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMF 409
            AIV+ +  +      D +    K + G   LLI  +  +        P DG T      
Sbjct: 375 YAIVK-YDVDTGEPVRDADGRCIKVKPGEVGLLIGRITDRG-------PFDGYT------ 420

Query: 410 RANTVMLGYFKNPKATE-----EAFRNG--WYHTGDLAVRNPDGYVQMKDRRKDIIISGA 462
                      +P+A+E     + F+ G  W++TGDL   +  G+ Q  DR  D      
Sbjct: 421 -----------DPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKG 469

Query: 463 EIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVP-------VAFVKLKEGREASPEELV 515
           E +++ EVE  L   P V EA V G V     EVP       +A + L +G E     L 
Sbjct: 470 ENVATTEVENALSGFPGVEEAVVYG-V-----EVPGTDGRAGMAAIVLADGAEFDLAALA 523

Query: 516 TFCGDELPSCMVP 528
               + LP+  VP
Sbjct: 524 AHLYERLPAYAVP 536

Length = 600

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score =  118 bits (297), Expect = 2e-28
 Identities = 93/373 (24%), Positives = 139/373 (37%), Gaps = 66/373 (17%)

Query: 204 YTSGSTGDPKGVVYSHRG--AYLNSLAQISRCDVRDMPVF---------LWTLDMFRCNG 252
           +TSGSTG PKGV  SH    ++L+ +  +   D+ +  VF         L   D+F    
Sbjct: 104 FTSGSTGKPKGVQISHANLASFLDWM--VEDFDLTEGDVFSNQAPFSFDLSVFDLF---- 157

Query: 253 WCCTWAMAAVGGINVCIR---TVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQ 309
                A    G     I          +F+ +  H +T     P   +++  +   +   
Sbjct: 158 --PALA---SGATLYVIPKEQIADPLALFEFLKEHGLTVWVSVPSFASLLLLSRELNPES 212

Query: 310 LQ--RKVIIVIAG-VLPTIEVLEQVANFG----FNIRHAYGMTE----VLGPAIVRQWKP 358
           L   R    +  G VLP          F      N+   YG TE    V    +  +   
Sbjct: 213 LPSLRTF--LFCGEVLPKKLAKALRRRFPNARIINL---YGPTEATVAVTAYEVTPEPLS 267

Query: 359 EGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGY 418
             E   + +     +        LI  +D   +      P      GE++     V  GY
Sbjct: 268 RNEPLPIGYPKPGLR-------ALI--LDEDGR------PVPPGEEGELVIAGPQVSPGY 312

Query: 419 FKNPKATEEAFRN----GWYHTGDLAVRNPDGYVQMKDRRKDII-ISGAEIISSL-EVEA 472
             NP+ T +AF       WY TGDL     DG +    R+   I + G  I   L E+EA
Sbjct: 313 LNNPEKTAKAFFQDEGQRWYRTGDLVYLEDDGLLVYLGRKDFQIKLHGYRI--ELEEIEA 370

Query: 473 VLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIF 532
            L + P V EA V+     +     VAFV  KEG     + L       LP  M+PR   
Sbjct: 371 ALRALPGVEEAVVLPVPKGEKVVRLVAFVVGKEGAL-DTKALKKELKKRLPPYMIPRRFV 429

Query: 533 F-EDIPVNSTGKV 544
           + + +P+N+ GK+
Sbjct: 430 YLDSLPLNANGKI 442

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score =  117 bits (295), Expect = 4e-28
 Identities = 105/368 (28%), Positives = 153/368 (41%), Gaps = 54/368 (14%)

Query: 198 DPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWC-CT 256
           DP  + +TSGS G PKGVV SHR    N     +  D+    V L  L +F   G     
Sbjct: 146 DPAVILFTSGSEGLPKGVVLSHRNLLANIDQIAAVIDLNTEDVLLGALPLFHAFGLTVTL 205

Query: 257 WAMAAVGGINVC------IRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQL 310
                 G   V        + + A++I D    +K T LCG P  L   A  +  +    
Sbjct: 206 LLPLLTGLRVVYYPNPLDAKKI-AELIRD----YKATILCGTPTFLRGYARNAHPEDFSS 260

Query: 311 QRKVIIVIAGV--LP--TIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALD 366
            R   +V+AG   LP  T E+ E+   FG  I   YG TE   P I     P G      
Sbjct: 261 LR---LVVAGAEKLPEATRELFEE--KFGIRILEGYGATE-CSPVISVN-TPMG------ 307

Query: 367 HEHEMTKHREGLNNLLIQGVDVKQQN--TMKSVPHDGKTLGEVMFRANTVMLGYFKNPKA 424
                  ++ G     + G++V+  +  T + +P      G ++ R   VM GY  N + 
Sbjct: 308 -------NKPGTVGRPLPGIEVRIVSPETHEELPIG--EGGLLLVRGPNVMSGYLNNEEK 358

Query: 425 T--EEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLE 482
           T   E   +GWY TGD+   + DG++ +  R K     G E++S   VE +L    ++L 
Sbjct: 359 TSEVEVLGDGWYDTGDIGKIDEDGFLTIVGRLKRFAKIGGEMVSLTAVEELLS---EILP 415

Query: 483 A----AVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGD-ELPSCMVPRAI-FFEDI 536
                A V   D++  E  V         +  PEEL     +  LP+  VPR I   ++I
Sbjct: 416 EDSLHAAVEVPDEKKGEKIVLLT---TTEDLDPEELNAILREAGLPNLAVPRKILHVDEI 472

Query: 537 PVNSTGKV 544
           P+  +GK 
Sbjct: 473 PLLGSGKT 480

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score =  116 bits (292), Expect = 1e-27
 Identities = 127/525 (24%), Positives = 193/525 (36%), Gaps = 83/525 (15%)

Query: 57  KLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQL 116
           +LA     L + RGD VA    N     ++ +A   +G   + +N+ L  A  A I+   
Sbjct: 36  RLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHLTPAEAAYIVDDS 95

Query: 117 EAKIIFVDYQFVEVVQNALDILSPN-------HKCDKAPLLVTIPECDHYQPSTCSVANN 169
            A+ +      ++V +  L    P            +    V   E     P+T      
Sbjct: 96  GARALITSAAKLDVARALLK-QCPGVRHRLVLDGDGELEGFVGYAEAVAGLPAT-----P 149

Query: 170 FPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVY-------SHRGA 222
               SL   D+L                      Y+SG+TG PKG+              
Sbjct: 150 IADESLG-TDML----------------------YSSGTTGRPKGIKRPLPEQPPDTPLP 186

Query: 223 YLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCIRTVSAKIIFDSIL 282
               L ++      DM V+L    ++          +  +GG  + +    A+     I 
Sbjct: 187 LTAFLQRLWGFR-SDM-VYLSPAPLYHSAPQRAVMLVIRLGGTVIVMEHFDAEQYLALIE 244

Query: 283 IHKVTHLCGQP----RILNMIANASAS-DQNQLQRKVIIVIAGVLPT-IEVLEQ-VANFG 335
            + VTH    P    R+L +        D + L+    + I    P   +V EQ +  +G
Sbjct: 245 EYGVTHTQLVPTMFSRMLKLPEEVRDKYDLSSLE----VAIHAAAPCPPQVKEQMIDWWG 300

Query: 336 FNIRHAYGMTEVLGPAIVR--QWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNT 393
             I   Y  TE LG       +W            H  T  R    +L I   D      
Sbjct: 301 PIIHEYYAATEGLGFTACDSEEWL----------AHPGTVGRAMFGDLHILDDD------ 344

Query: 394 MKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAF--RNGWYHTGDLAVRNPDGYVQMK 451
              +P      G + F        Y  +P  T EA      W   GD+   + DGY+ + 
Sbjct: 345 GAELP--PGEPGTIWFEGGR-PFEYLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLT 401

Query: 452 DRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASP 511
           DR   +IISG   I   E E +L+++PKV +AAV G  ++ L E   A V+  +G +  P
Sbjct: 402 DRAAFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGVDPGP 461

Query: 512 ---EELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGK 552
               EL+ FC   L     PR+I FED +P   TGK+ K +LR +
Sbjct: 462 ALAAELIAFCRQRLSRQKCPRSIDFEDELPRLPTGKLYKRLLRDR 506

Length = 511

>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional

 Score =  114 bits (287), Expect = 6e-27
 Identities = 133/527 (25%), Positives = 210/527 (39%), Gaps = 56/527 (10%)

Query: 35  DATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPN----IPALYKLHFAV 90
           D   +I      +WR+  +    LA+AL  L I    +V  M  N    + AL     A 
Sbjct: 58  DRPGLIDELGTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEAL----LAA 113

Query: 91  PMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLL 150
              GA +  LNT      LA ++ +     +  D +F   V  AL        C +A  +
Sbjct: 114 NRIGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALA------DCPQATRI 167

Query: 151 VTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTG 210
           V   + DH                    ++L    A         +   I +  TSG+TG
Sbjct: 168 VAWTDEDHDLTV----------------EVLIAAHAGQRPEPTGRKGRVILL--TSGTTG 209

Query: 211 DPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCIR 270
            PKG   S  G      A + R   R     +    MF   G+      A++    V  R
Sbjct: 210 TPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWGFSQLVLAASLACTIVTRR 269

Query: 271 TVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGV---LPTIEV 327
               +   D I  H+ T L   P + + I +  A  +N+   + +   A     +    V
Sbjct: 270 RFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSGRSLRFAAASGSRMRPDVV 329

Query: 328 LEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVD 387
           +  +  FG  I + Y  TE    A      P    +A D     T  R        +G +
Sbjct: 330 IAFMDQFGDVIYNNYNATEAGMIATA---TPADLRAAPD-----TAGRPA------EGTE 375

Query: 388 VK-QQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDG 446
           ++      + VP  G+  G +  R +T   GY     +T++ F +G+  +GD+   + +G
Sbjct: 376 IRILDQDFREVP-TGEV-GTIFVRNDTQFDGY--TSGSTKD-FHDGFMASGDVGYLDENG 430

Query: 447 YVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEG 506
            + +  R  ++I+SG E +  +EVE  L ++P V EAAV+G  D+Q  +   AFV LK G
Sbjct: 431 RLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPG 490

Query: 507 REASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGK 552
             A+PE L     D L +  VPR I   D +P  +TGK+ +  L+ +
Sbjct: 491 ASATPETLKQHVRDNLANYKVPRDIVVLDELPRGATGKILRRELQAR 537

Length = 537

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score =  112 bits (282), Expect = 1e-26
 Identities = 101/383 (26%), Positives = 151/383 (39%), Gaps = 84/383 (21%)

Query: 204 YTSGSTGDPKGVVYSHRGAYLNSL-AQISRCDVRDMPVFLW----TLDMFRCNGWCCTWA 258
           YTSGSTG PKGV+  HRG  +N L     R  +      L     + D      W     
Sbjct: 100 YTSGSTGRPKGVMVEHRG-LVNLLAWLQERYGLTAGDRVLQFASFSFDAS---VWEIFPP 155

Query: 259 MAAVGGINVCIRTVSAKIIFDSILI------HKVTHLCGQPRILNMIANA-SASDQNQLQ 311
           + + G     +     +++ D   +      H++T L   P +L  + +A   +    L+
Sbjct: 156 LLS-GA---TLVLAPPEVLRDPEALAELLREHRITVLHLVPSLLRALLDALEPAALPSLR 211

Query: 312 RKVIIVIAG-VLPTIEVLEQVANFGFNIR--HAYGMTEVLGPAIVRQWKPEGESSALDHE 368
               +++ G  LP  E++ +        R  +AYG TE     +          +     
Sbjct: 212 L---VIVGGEALPA-ELVRRWRELFPGARLVNAYGPTET---TVD--------VTY---- 252

Query: 369 HEMTKHREGLNNLLI-QGVDVKQQNT--------MKSVPHDGKTLGEVMFRANTVMLGYF 419
           HE+        ++ I + +     NT        ++ VP  G   GE+      V  GY 
Sbjct: 253 HEVDPDDLDGGSVPIGRPIA----NTRVYVLDEDLRPVP-VGVP-GELYIGGAGVARGYL 306

Query: 420 KNPKATEEAFRNGW--------YHTGDLAVRNPDG---YV-----QMKDRRKDIIISGAE 463
             P+ T E F            Y TGDLA   PDG   ++     Q+K       I G  
Sbjct: 307 NRPELTAERFVPDPFGGPGERLYRTGDLARWLPDGNLEFLGRADDQVK-------IRGYR 359

Query: 464 IISSL-EVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDEL 522
           I   L E+EA LL++P V EA VV + D   ++  VA+V    G E    EL  F  + L
Sbjct: 360 I--ELGEIEAALLAHPGVREAVVVAREDGAGEKRLVAYVVPAAGAELDAAELRAFLAERL 417

Query: 523 PSCMVPRAIFF-EDIPVNSTGKV 544
           P  MVP A    + +P+   GKV
Sbjct: 418 PDYMVPSAFVVLDALPLTPNGKV 440

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score =  110 bits (276), Expect = 9e-26
 Identities = 126/545 (23%), Positives = 204/545 (37%), Gaps = 117/545 (21%)

Query: 26  LERAAHV-YGDATSIIYGTVRFSWRQTHQICLKLASALAQ-LKISRGDIVAAMAPNIPAL 83
           L+R  H   G+          ++++       ++A  L + L +  G+ V   + N P L
Sbjct: 40  LDRHVHNGRGNRPCFRTFEETWTYQDLLDRANRIAHVLVEDLGVVPGNRVLLRSANTPML 99

Query: 84  YKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHK 143
                AV  AGA++      L +  L +I                               
Sbjct: 100 VACWLAVLKAGAIVVTTMPLLRAKELTTI------------------------------- 128

Query: 144 CDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVN 203
            DKA   +T   CD                         +  AD          D   + 
Sbjct: 129 VDKAR--ITHALCDK-----------------------RLTAAD----------DVALIG 153

Query: 204 YTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMP--VFLWTLDMFRCNGWCCTWAMAA 261
           +TSG+TG PKG ++ HR   L       R  ++  P  VF+ +  +        T+ +  
Sbjct: 154 FTSGTTGLPKGTMHFHRDI-LAICDAFPRHVLQPTPDDVFIGSPPL------AFTFGLGG 206

Query: 262 -------VGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILN-MIANASASDQNQLQRK 313
                   G   V +   +  ++  +I  H+ T L   P     M+    A D + L++ 
Sbjct: 207 LVLFPLRFGASAVLLEQATPPLLLKAIQEHRATILFTAPTAYRAMLIKVKAFDISSLRK- 265

Query: 314 VIIVIAG-VLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMT 372
              V AG  LP     +     G  I    G TE+L   I         S+  ++     
Sbjct: 266 --CVSAGETLPAKVWQDWYERTGLKIIDGIGATEMLHIFI---------SANEENA---- 310

Query: 373 KHREGLNNLLIQGVDVK-QQNTMKSVPHDGKTLGEVMFRANTVMLG--YFKNPKATEEAF 429
             + G     + G + +   +    VP  G+  G +  R  T   G  Y  +    +E  
Sbjct: 311 --KPGATGKPVPGYEARIVDDQGNEVP-RGEA-GRLAVRGPT---GCRYLDDE-RQQEYV 362

Query: 430 RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKV 489
           R+GW  TGD+  ++ DGY     R  D+I+S    I++ EVE  LL++P V E AV+G  
Sbjct: 363 RDGWNVTGDIFRQDEDGYFHYVARSDDMIVSAGYNIAAPEVEDALLTHPDVAECAVIGVP 422

Query: 490 DDQLKEVPVAFVKLKEGREASP---EELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQ 545
           D++  ++  A + L++G +A+    E L  F    +     PR I F D +P   TGK+Q
Sbjct: 423 DEERGQIVCAHIVLRDGTKATELLAERLQDFVKAVIAPYKYPREINFVDALPKTQTGKIQ 482

Query: 546 KFVLR 550
           +F LR
Sbjct: 483 RFRLR 487

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score =  109 bits (274), Expect = 3e-25
 Identities = 127/545 (23%), Positives = 196/545 (35%), Gaps = 89/545 (16%)

Query: 35  DATSIIYGTVRFSWRQTHQICLKLASAL-AQLKISRGDIVAAMAPNIPALYKLHFAVPMA 93
           D   + +     SWR+  +     A+AL A+L  +R   V  +  N P    L  A  ++
Sbjct: 18  DDRGLYFEDSFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAALS 77

Query: 94  GAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTI 153
           G V   LN     A LA  +   + +++  +    E+    LD L P          V +
Sbjct: 78  GIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAEL----LDGLDPG---------VRV 124

Query: 154 PECDHYQPSTCSVANNFPSGSLDYNDLLEM---GKADFEMMQPNHECDPISVNYTSGSTG 210
              D                S  + D L      +  F +  P+   D   + +TSG++G
Sbjct: 125 INVD----------------SPAWADELAAHRDAEPPFRVADPD---DLFMLIFTSGTSG 165

Query: 211 DPKGVVYSHR-----GAYLNSLAQISRCDVR--DMPVFLWTLDMFRCNGWCCTWAMAAVG 263
           DPK V  +HR     G  L     +   DV    MP       +F  N     WA+A   
Sbjct: 166 DPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMP-------LFHSNAVMAGWAVALAA 218

Query: 264 GINVCIRT-VSAKIIFDSILIHKVTHL--CGQPRILNMI-ANASASDQNQLQRKVIIVIA 319
           G ++ +R   SA      +  +  T+    G+P  L+ + A     D      +++    
Sbjct: 219 GASIALRRKFSASGFLPDVRRYGATYANYVGKP--LSYVLATPERPDDADNPLRIVYGNE 276

Query: 320 GVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLN 379
           G    I        FG  +   +G TE  G AI     P+    AL              
Sbjct: 277 GAPGDIARFA--RRFGCVVVDGFGSTE-GGVAI--TRTPDTPPGAL-------------- 317

Query: 380 NLLIQGVDVKQQNTMKSVP-----HDGKT-----LGE-VMFRANTVMLGYFKNPKATEEA 428
             L  GV +   +T    P               +GE V         GY+ +P+A  E 
Sbjct: 318 GPLPPGVAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAER 377

Query: 429 FRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGK 488
            R G Y +GDLA R+ DGY     R  D +    E + +  +E +LL  P   E AV   
Sbjct: 378 MRGGVYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAV 437

Query: 489 VDDQLKEVPVAFVKLKEGREASPEELVTFCG--DELPSCMVPRAI-FFEDIPVNSTGKVQ 545
            D  + +  +A + L  G +  P+    F     +L     P  +    ++P  +T KV 
Sbjct: 438 PDPVVGDQVMAALVLAPGAKFDPDAFAEFLAAQPDLGPKQWPSYVRVCAELPRTATFKVL 497

Query: 546 KFVLR 550
           K  L 
Sbjct: 498 KRQLS 502

Length = 529

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score =  108 bits (272), Expect = 3e-25
 Identities = 109/399 (27%), Positives = 160/399 (40%), Gaps = 86/399 (21%)

Query: 198 DPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRC-DVRDMPVFLWTLDMFRCNGWCC- 255
           DP  + YTSG+TG PKG V++H G  + +   I  C D++     LW  DM    GW   
Sbjct: 101 DPAMIIYTSGTTGKPKGTVHTHAGFPVKAAKDIGFCFDLKPGDRLLWITDM----GWMMG 156

Query: 256 TWAMA---AVGGINVCIRTV----SAKIIFDSILIHKVTHLCGQPRILNMIANASASDQN 308
            W +     +G   V             ++  +  HKVTHL   P ++  +     +   
Sbjct: 157 PWLVLGGLLLGATIVLYEGAPDYPDPDRLWRIVERHKVTHLGLSPTLIRALRAHGDA--- 213

Query: 309 QLQRKVIIVIAGVLPTIEVL----------------EQVANFGFNIRHAYGMTEV----L 348
                   V    L ++ VL                E+V      I +  G TE+    L
Sbjct: 214 -------PVEGHDLSSLRVLGSTGEPWDPESWLWLFERVGGGRAPIINYSGGTEISGGIL 266

Query: 349 GPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGK----TL 404
           G   +R  KP   +                        DV        V  DG+     +
Sbjct: 267 GNVPIRPIKPCSFNGPS----------------PGMDADV--------VDEDGRPVRGEV 302

Query: 405 GEVMFRANTVML--GYFKNPKATEEA----FRNGWYHTGDLAVRNPDGYVQMKDRRKDII 458
           GE++ RA    +  G++++P+   E     F   W H GD A+ + DGY  +  R  D I
Sbjct: 303 GELVVRAPWPGMTRGFWRDPERYLETYWSRFPGVWVH-GDWALVDEDGYWYILGRSDDTI 361

Query: 459 -ISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLK-EVPVAFVKLKEGREASPE---E 513
            ++G  +  + E+E+VL S+P V EAA +G V D +K E  V FV LK G   S     E
Sbjct: 362 KVAGKRVGPA-EIESVLNSHPAVAEAAAIG-VPDPVKGEAIVCFVVLKPGVTPSAALEAE 419

Query: 514 LVTFCGDELPSCMVPRAI-FFEDIPVNSTGKVQKFVLRG 551
           L    GD L     PR + F  D+P    GK+ + V+R 
Sbjct: 420 LADHVGDALGKPFRPREVHFVSDLPKTRNGKIMRRVIRA 458

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score =  108 bits (272), Expect = 4e-25
 Identities = 56/168 (33%), Positives = 92/168 (54%), Gaps = 4/168 (2%)

Query: 385 GVDVKQQNT-MKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRN 443
           G++V+ Q+   + +P  G+T GE+      V  GY+ NP+A  +AFR+GW+ TGDL   +
Sbjct: 348 GMEVQIQDDEGRELP-PGET-GEICVIGPAVFAGYYNNPEANAKAFRDGWFRTGDLGHLD 405

Query: 444 PDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKL 503
             G++ +  R  D+ ISG   +   E+E  LL++P V E AV+G  D    EV VA    
Sbjct: 406 ARGFLYITGRASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVA 465

Query: 504 KEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLR 550
           ++G      EL+ +   ++    +P+  FF D +P +  GK+ K ++R
Sbjct: 466 RDGAPVDEAELLAWLDGKVARYKLPKRFFFWDALPKSGYGKITKKMVR 513

Length = 528

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score =  108 bits (271), Expect = 5e-25
 Identities = 125/520 (24%), Positives = 201/520 (38%), Gaps = 50/520 (9%)

Query: 24  DFLERAAHVYGDATSIIYGTVRF--SWRQTHQICLKLASALAQLKISRGDIVAAMAPNIP 81
           D +E AA    +A +++    R   S+R   ++   LA  L +  +  GD VA    +  
Sbjct: 20  DLVEVAATRLPEAPALVVTADRIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNA 79

Query: 82  ALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPN 141
                  A   A  V+  L+  L  A      +   A+++ +D           D   P 
Sbjct: 80  EFVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPH------DRAEPT 133

Query: 142 HKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPIS 201
            +    PL V +         T SV        LD         +  E ++P    D   
Sbjct: 134 TRW--WPLTVNVGGDSGPSGGTLSV-------HLDAATEPTPATSTPEGLRP----DDAM 180

Query: 202 VNYTSGSTGDPKGVVYSHR--GAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAM 259
           + +T G+TG PK V ++H    + + ++    R   RD  V +  + ++  +G       
Sbjct: 181 IMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAV--MPLYHGHGLIAALLA 238

Query: 260 AAVGGINVCIRT---VSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVII 316
               G  V +      SA   +D I     T     P I  ++   +A++ +  +   + 
Sbjct: 239 TLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPSGRKPAALR 298

Query: 317 VI----AGVLP-TIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEM 371
            I    A +   T + L+    F   +  A+GMTE        Q +  G+         +
Sbjct: 299 FIRSCSAPLTAETAQALQT--EFAAPVVCAFGMTEATHQVTTTQIEGIGQ----TENPVV 352

Query: 372 TK---HREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEA 428
           +     R     + I G D         +P     +GEV  R  TV+ GY  +P  T   
Sbjct: 353 STGLVGRSTGAQIRIVGSD------GLPLPAG--AVGEVWLRGTTVVRGYLGDPTITAAN 404

Query: 429 FRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGK 488
           F +GW  TGDL   +  G + ++ R K++I  G E IS   VE VL S+P V+EAAV G 
Sbjct: 405 FTDGWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEAAVFGV 464

Query: 489 VDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVP 528
            D    E   A +  +E    + EELV FC + L +  +P
Sbjct: 465 PDQLYGEAVAAVIVPRESAPPTAEELVQFCRERLAAFEIP 504

Length = 534

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score =  107 bits (270), Expect = 8e-25
 Identities = 110/412 (26%), Positives = 184/412 (44%), Gaps = 65/412 (15%)

Query: 167 ANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVN-----YTSGSTGDPKGVVYSHRG 221
           A + P  ++ +ND L  G       QP  E +P + +     YT G+TG  KG + +HR 
Sbjct: 178 AYHLP-QAVKFNDALAKGAG-----QPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRN 231

Query: 222 AYLNSL-------AQISR-CDVRDMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCI---R 270
              N L       + ++  C++   P+ L+ +  F  +   C  AM  +G  N+ I   R
Sbjct: 232 LVANMLQCRALMGSNLNEGCEILIAPLPLYHIYAFTFH---CM-AMMLIGNHNILISNPR 287

Query: 271 TVSAKIIFDSILIHKVTHLCGQPRILNMIANASAS---DQNQLQRKVIIVIAGVLPTIEV 327
            + A +    +   K +   G   +   + N  A    D + L+  +   +A  L T E 
Sbjct: 288 DLPAMV--KELGKWKFSGFVGLNTLFVALCNNEAFRKLDFSALKLTLSGGMALQLATAER 345

Query: 328 LEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVD 387
            ++V   G  I   YGMTE      V                           + +  + 
Sbjct: 346 WKEVT--GCAICEGYGMTETSPVVSVNP----------------------SQAIQVGTIG 381

Query: 388 VKQQNTM-KSVPHDGKTL-----GEVMFRANTVMLGYFKNPKATEEAF-RNGWYHTGDLA 440
           +   +T+ K +  DG  L     GE+  +   VM GY++ P+AT+E    +GW  TGD+A
Sbjct: 382 IPVPSTLCKVIDDDGNELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIA 441

Query: 441 VRNPDGYVQMKDRRKD-IIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVA 499
           +   DGY+++ DR+KD I++SG  +  + E+E VL + P VL+ A +G  D++  E    
Sbjct: 442 LIQEDGYMRIVDRKKDMILVSGFNVYPN-ELEDVLAALPGVLQCAAIGVPDEKSGEAIKV 500

Query: 500 FVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLR 550
           FV +K G   + E+++      L    VP+A+ F D +P  + GK+ +  LR
Sbjct: 501 FVVVKPGETLTKEQVMEHMRANLTGYKVPKAVEFRDELPTTNVGKILRRELR 552

Length = 562

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score =  106 bits (267), Expect = 1e-24
 Identities = 88/396 (22%), Positives = 132/396 (33%), Gaps = 82/396 (20%)

Query: 198 DPISVNYTSGSTGDPKGVVYSHRGAYL--NSLAQISRCDVRDMPVFLWTLDMFRCNGWCC 255
           DP    YTSG+TG PK  + SHR           +      D  V    L ++  N    
Sbjct: 82  DPAFYIYTSGTTGLPKAAIMSHRRWLRAGAVFGGLGLLKPDD--VLYLCLPLYHSNALTV 139

Query: 256 TWAMAAVGGINVCI-RTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASD---QNQLQ 311
            W+ A   G ++ + R  SA   +  +  +  T       +   + N         + L 
Sbjct: 140 GWSSALAAGASLALRRKFSASQFWPDVRRYGATAFQYVGELCRYLLNQPEKPDDRDHPL- 198

Query: 312 RKVIIVIAGVLPTIEVLEQVAN-FG--------------------FNIRHAYGMTEVLGP 350
           RK+I    G     ++ ++    FG                    FN   A G       
Sbjct: 199 RKII----GNGLRPDIWDEFKERFGVPRIVEFYGSTEGNVGFINLFNKPGAVGRLPPAAI 254

Query: 351 AIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFR 410
           A+V ++  E E    D      K   G   LL+  +  +        P DG         
Sbjct: 255 AVV-KYDVETEEPIRDANGFCIKVPPGEVGLLLGEITDRN-------PFDG--------- 297

Query: 411 ANTVMLGYFKNPKATEEAFRN------GWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEI 464
                  Y  +    ++  R+       +++TGDL  R+  GY    DR  D      E 
Sbjct: 298 -------YTDDEATEKKILRDVFKKGDAYFNTGDLVRRDGFGYFYFVDRLGDTFRWKGEN 350

Query: 465 ISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPV---------AFVKLKEGREASPEELV 515
           +S+ EVE VL  +P V EA V G        V V         A + L  G    P+   
Sbjct: 351 VSTTEVEEVLAKHPGVEEANVYG--------VEVPGTEGRAGMAALTLAPGAAFDPQAFA 402

Query: 516 TFCGDELPSCMVPRAI-FFEDIPVNSTGKVQKFVLR 550
               ++LP+   P  +     +    T K QK  LR
Sbjct: 403 AHLDEQLPAYARPLFLRVQAAMETTGTFKYQKTDLR 438

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score =  106 bits (266), Expect = 4e-24
 Identities = 144/542 (26%), Positives = 216/542 (39%), Gaps = 71/542 (13%)

Query: 29  AAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPN----IPALY 84
           AA    D  ++I      ++ +  +    LA  L  L +  GD VA +A N    + ALY
Sbjct: 58  AARRAPDRAALIDERGTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALY 117

Query: 85  KLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKC 144
               A    GA +  LNT      LA +  +   K +  D +F +++      L      
Sbjct: 118 ----AAGKVGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDL------ 167

Query: 145 DKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMM----QPNHECDPI 200
            +       P+ D    ST          +LD  DL+         +    +P       
Sbjct: 168 GRLRAWGGNPDDDEPSGSTD--------ETLD--DLIAGSST--APLPKPPKPGG----- 210

Query: 201 SVNYTSGSTGDPKGVVYSHRGAYLNSLAQI-SRCDVRDMPVFLWTLDMFRCNGW-CCTWA 258
            V  TSG+TG PKG         L  LA + SR   R     L    MF   GW   T A
Sbjct: 211 IVILTSGTTGTPKGAPRPEPSP-LAPLAGLLSRVPFRAGETTLLPAPMFHATGWAHLTLA 269

Query: 259 MAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQP----RILNMIANASAS-DQNQLQRK 313
           MA +G   V  R    +   + I  HK T L   P    RIL++     A  D + L+  
Sbjct: 270 MA-LGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLK-- 326

Query: 314 VIIVIAGVLPTIEVLEQVAN-FGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMT 372
            II ++G   + E+  +    FG  + + YG TEV    I     PE          ++ 
Sbjct: 327 -IIFVSGSALSPELATRALEAFGPVLYNLYGSTEVAFATIAT---PE----------DLA 372

Query: 373 KHREGLNNLLIQGVDVK--QQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFR 430
           +   G      +GV VK   +N    VP     +G +         GY  + +  +    
Sbjct: 373 EA-PGTVGRPPKGVTVKILDENG-NEVP--RGVVGRIFVGNGFPFEGY-TDGRDKQII-- 425

Query: 431 NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVD 490
           +G   +GD+   + DG + +  R  D+I+SG E +   EVE +L  +P V+EAAV+G  D
Sbjct: 426 DGLLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDD 485

Query: 491 DQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPR-AIFFEDIPVNSTGKVQKFVL 549
           ++  +   AFV    G     + +  +  D L    VPR  +F +++P N TGKV K  L
Sbjct: 486 EEFGQRLRAFVVKAPGAALDEDAIKDYVRDNLARYKVPRDVVFLDELPRNPTGKVLKREL 545

Query: 550 RG 551
           R 
Sbjct: 546 RE 547

Length = 549

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score =  103 bits (260), Expect = 2e-23
 Identities = 60/169 (35%), Positives = 101/169 (59%), Gaps = 9/169 (5%)

Query: 394 MKSVPHDGKTL-----GEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYV 448
           +K V  DG  +     GE+  +   VMLGY++ P+AT+E  ++GW  TGD+AV + +G++
Sbjct: 389 IKLVDDDGNEVPPGEPGELWVKGPQVMLGYWQRPEATDEVIKDGWLATGDIAVMDEEGFL 448

Query: 449 QMKDRRKD-IIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGR 507
           ++ DR+KD I++SG  +  + E+E V++ +PKVLE A VG   +   E    FV +K+  
Sbjct: 449 RIVDRKKDMILVSGFNVYPN-EIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFV-VKKDP 506

Query: 508 EASPEELVTFCGDELPSCMVPRAI-FFEDIPVNSTGKVQKFVLRGKVNA 555
             + EEL+T C   L    VP+ + F +++P ++ GK+ +  LR +  A
Sbjct: 507 SLTEEELITHCRRHLTGYKVPKLVEFRDELPKSNVGKILRRELRDEARA 555

Length = 560

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score =  103 bits (258), Expect = 2e-23
 Identities = 101/374 (27%), Positives = 158/374 (42%), Gaps = 54/374 (14%)

Query: 202 VNYTSGSTGDPKGVVYSHRGAYLNSLAQI-------SRCDVRDMPVFLWTLDMFRCNGWC 254
           + YT G+TG PKG + +H    L S   I       SR    D+   +  L +F      
Sbjct: 197 LQYTGGTTGLPKGAMLTH--GNLTSAVSIYDVWGKPSRATRGDVERVICVLPLFH----- 249

Query: 255 CTWAMAAV-------GGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQ 307
             +A+  +       G +    +      +F  I   + T   G P +   +AN  + ++
Sbjct: 250 -IYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLEK 308

Query: 308 NQLQRKVIIVIAGV-LPTIEVLEQVANF-----GFNIRHAYGMTEVLGPAIVRQWKPEGE 361
             L     I   G  LP      +VANF     G  ++  +GMTE   P       PEG 
Sbjct: 309 RDLSSLATIGSGGAPLPV-----EVANFFERKTGLKLKSGWGMTETCSPGTGH--PPEGP 361

Query: 362 SSALDHEHEMTKHREGLNNLLIQGVD---VKQQNTMKSVPHDGKTLGEVMFRANTVMLGY 418
                        + G   L++ G++   V   +  K +P     +GE+  R   V  GY
Sbjct: 362 D------------KPGSIGLMLPGIELDVVSLDDPTKVLPPG--EVGELRIRGPNVTRGY 407

Query: 419 FKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNP 478
           +  P+ + EAF    + TGD+   + DGY  + DR+KD+IISG   +    +E  +  +P
Sbjct: 408 WNRPEESAEAFVGDRFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHP 467

Query: 479 KVLEAAVVGKVDDQLKEVPVAFVKLKEGREA-SPEELVTFCGDELPSCMVPRAI-FFEDI 536
            V E  V+G  D    E   AFVKL+ G +  S +EL  F   +L    +P A+ F +++
Sbjct: 468 GVQEVIVIGIPDQYRGEAAKAFVKLRPGAKPFSLDELRAFLAGKLGKHELPVAVEFVDEL 527

Query: 537 PVNSTGKVQKFVLR 550
           P    GK+ +  LR
Sbjct: 528 PRTPVGKLSRHELR 541

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score =  103 bits (258), Expect = 3e-23
 Identities = 53/147 (36%), Positives = 75/147 (51%), Gaps = 10/147 (6%)

Query: 408 MFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISS 467
           M R      G + NP+  E  F   WY +GD A  + DGY   + R  D+I +  E +  
Sbjct: 414 MMR------GIWNNPEKYESYFAGDWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGP 467

Query: 468 LEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPE---ELVTFCGDELPS 524
            EVE+ L+ +P V EA V+GK D    E+  AFV L+ G E S E   E+  F    L +
Sbjct: 468 FEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGYEPSEELKEEIRGFVKKGLGA 527

Query: 525 CMVPRAIFFED-IPVNSTGKVQKFVLR 550
              PR I F+D +P   +GK+ + VL+
Sbjct: 528 HAAPREIEFKDKLPKTRSGKIMRRVLK 554

Length = 570

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score =  102 bits (255), Expect = 6e-23
 Identities = 79/240 (32%), Positives = 119/240 (49%), Gaps = 32/240 (13%)

Query: 319 AGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGL 378
           A V  T E  EQ+   G  I   YG+TE    + V    P GE +           R G 
Sbjct: 344 ALVKATAERWEQLT--GCTIVEGYGLTET---SPVASTNPYGELA-----------RLGT 387

Query: 379 NNLLIQGVDVKQQNTMKSVPHDGKTL-----GEVMFRANTVMLGYFKNPKATEEAF-RNG 432
             + + G        +K +  DG  L     GE+  +   VM GY++ P+AT EA    G
Sbjct: 388 VGIPVPG------TALKVIDDDGNELPLGERGELCIKGPQVMKGYWQQPEATAEALDAEG 441

Query: 433 WYHTGDLAVRNPDGYVQMKDRRKD-IIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDD 491
           W+ TGD+AV +PDG+V++ DR+KD II+SG  +  + E+E V++++PKV   A +G  D+
Sbjct: 442 WFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPN-EIEDVVMAHPKVANCAAIGVPDE 500

Query: 492 QLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLR 550
           +  E    FV  ++    S EEL  +C +      VP+ I   D +P+   GK+ +  LR
Sbjct: 501 RSGEAVKLFVVARDP-GLSVEELKAYCKENFTGYKVPKHIVLRDSLPMTPVGKILRRELR 559

Length = 562

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score =  102 bits (256), Expect = 1e-22
 Identities = 95/374 (25%), Positives = 145/374 (38%), Gaps = 51/374 (13%)

Query: 198  DPISVNYTSGSTGDPKGVVYSHR--GAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCC 255
            D  ++ ++SGS G+PKGV+ SH    + +  ++ +      D  V L +L  F   G   
Sbjct: 783  DTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDD--VILSSLPFFHSFGLTV 840

Query: 256  TWAMAAVGGINVCIRTVS------AKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQ 309
            T  +  + GI V    V       A  I   +  H+ T L G P  L +           
Sbjct: 841  TLWLPLLEGIKV----VYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHPLM 896

Query: 310  LQRKVIIVIAGV--LPTIEVLEQVAN-FGFNIRHAYGMTEVLGPAIVRQWKPEGESSALD 366
                + +V+AG   L   EV +     FG  I   YG TE    A V         +  D
Sbjct: 897  FA-SLRLVVAGAEKLKP-EVADAFEEKFGIRILEGYGATETSPVASV---------NLPD 945

Query: 367  HE----HEMTKHREGLNNLLIQGVDVK--QQNTMKSVPHDGKTLGEVMFRANTVMLGYFK 420
                     T  +EG   + + GV V+     T + +P      G ++     VM GY  
Sbjct: 946  VLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEELPP--GEDGLILIGGPQVMKGYLG 1003

Query: 421  NPKATEEAFRN----GWYHTGDLAVRNPDGYVQMKDR--RKDIIISGAEIISSLEVE--- 471
            +P+ T E  ++    GWY TGD    + DG++ + DR  R   I  G E++    VE   
Sbjct: 1004 DPEKTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKI--GGEMVPLGAVEEEL 1061

Query: 472  AVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAI 531
            A  L   +V   AV    D++  E  V             +  +   G  LP+   P   
Sbjct: 1062 AKALGGEEV-VFAVTAVPDEKKGEKLVVLHTCGAEDVEELKRAIKESG--LPNLWKPSRY 1118

Query: 532  F-FEDIPVNSTGKV 544
            F  E +P+  +GK+
Sbjct: 1119 FKVEALPLLGSGKL 1132

Length = 1146

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score =  100 bits (252), Expect = 2e-22
 Identities = 54/160 (33%), Positives = 79/160 (49%), Gaps = 7/160 (4%)

Query: 398 PHDGKTL-----GEVMFRANTVMLGYFKNPKATEEAFR-NGWYHTGDLAVRNPDGYVQMK 451
           P  G  L     G +  +   V  GY++ P+ T E FR +G++ TGDL   +  GYV + 
Sbjct: 337 PETGAELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDERGYVHIV 396

Query: 452 DRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASP 511
            R KD+IISG   +   EVE  +   P V+E+AV+G       E   A V  K G     
Sbjct: 397 GRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPGAALDE 456

Query: 512 EELVTFCGDELPSCMVPRAIFF-EDIPVNSTGKVQKFVLR 550
             ++      L     P+ +FF +++P N+ GKVQK +LR
Sbjct: 457 AAILAALKGRLARFKQPKRVFFVDELPRNTMGKVQKNLLR 496

Length = 504

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score =  100 bits (251), Expect = 2e-22
 Identities = 53/153 (34%), Positives = 81/153 (52%), Gaps = 5/153 (3%)

Query: 403 TLGEVMFRANTVMLGYFKNPKATEEAFR-NGWYHTGDLAVRNPDGYVQMKDRRKDIIISG 461
            +G V F  +     Y  +P+ T  A   +GW   GD+   + DGY+ + DR+ D+IISG
Sbjct: 339 EIGTVYFEMDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMIISG 398

Query: 462 AEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPE---ELVTFC 518
              I   E+E +L+++PKV + AV G  D+++ E   A V+  +G +A      EL+ + 
Sbjct: 399 GVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPADGADAGDALAAELIAWL 458

Query: 519 GDELPSCMVPRAIFFED-IPVNSTGKVQKFVLR 550
              L     PR+I FED +P   TGK+ K  LR
Sbjct: 459 RGRLAHYKCPRSIDFEDELPRTPTGKLYKRRLR 491

Length = 502

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 98.0 bits (245), Expect = 2e-21
 Identities = 51/124 (41%), Positives = 69/124 (55%), Gaps = 6/124 (4%)

Query: 432 GWYHTGDLAVRNPDGYVQMKDRRKDII-ISGAEIISSLEVEAVLLSNPKVLEAAVVGKVD 490
           G+Y TGD A R+ DGY  +  R  D+I +SG  +  + EVE+ L+S+P V EAAVVGK D
Sbjct: 463 GYYFTGDGARRDEDGYYWILGRVDDVINVSGHRL-GTAEVESALVSHPAVAEAAVVGKPD 521

Query: 491 DQLKEVPVAFVKLKEGREASPE---ELVTFCGDELPSCMVPRAIFF-EDIPVNSTGKVQK 546
           +   E   AFV LK+G E S E   EL      E+     P  I F   +P   +GK+ +
Sbjct: 522 EVKGEAIYAFVTLKDGVEPSDELRKELKKHVRKEIGPIATPDEIIFVPGLPKTRSGKIMR 581

Query: 547 FVLR 550
            +LR
Sbjct: 582 RILR 585

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score = 95.4 bits (238), Expect = 1e-20
 Identities = 48/124 (38%), Positives = 68/124 (54%), Gaps = 6/124 (4%)

Query: 432 GWYHTGDLAVRNPDGYVQMKDRRKDII-ISGAEIISSLEVEAVLLSNPKVLEAAVVGKVD 490
           G+Y TGD A R+ DGY+ +  R  D+I +SG  +  + E+E+ L+S+P V EAAVVG  D
Sbjct: 475 GYYFTGDGARRDKDGYIWITGRVDDVINVSGHRL-GTAEIESALVSHPAVAEAAVVGIPD 533

Query: 491 DQLKEVPVAFVKLKEGREASPE---ELVTFCGDELPSCMVPRAIFF-EDIPVNSTGKVQK 546
           D   +   AFV LK+G E   E   EL      E+     P  I F   +P   +GK+ +
Sbjct: 534 DIKGQAIYAFVTLKDGYEPDDELRKELRKHVRKEIGPIAKPDKIRFVPGLPKTRSGKIMR 593

Query: 547 FVLR 550
            +LR
Sbjct: 594 RLLR 597

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 92.0 bits (229), Expect = 1e-19
 Identities = 53/160 (33%), Positives = 86/160 (53%), Gaps = 10/160 (6%)

Query: 400 DGKTL-----GEVMFRANTVMLGYFKNPKATEEA-FRNGWYHTGDLAVRNPDGYVQMKDR 453
           DG  L     GE+  R   VM GY+  P  T +    +G++ TGD+ V +  GY ++ DR
Sbjct: 397 DGNDLPLGEPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYTKIVDR 456

Query: 454 RKD-IIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPE 512
           +KD I++SG  +  + E+E V+ S+P VLE A VG  D+   E    FV +K+    + E
Sbjct: 457 KKDMILVSGFNVYPN-EIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFV-VKKDPALTEE 514

Query: 513 ELVTFCGDELPSCMVPRAI-FFEDIPVNSTGKVQKFVLRG 551
           ++  FC + L +   P+ + F  ++P  + GK+ +  LR 
Sbjct: 515 DVKAFCKERLTNYKRPKFVEFRTELPKTNVGKILRRELRD 554

Length = 557

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 91.2 bits (226), Expect = 3e-19
 Identities = 105/483 (21%), Positives = 165/483 (34%), Gaps = 77/483 (15%)

Query: 13  ASANNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDI 72
           A+   + LT     E  A    DA +++ G  + ++ +      +LA  L  L +  G+ 
Sbjct: 220 AAPIPLRLTIHLLFEEQAATTPDAVALVRGGQQLTYAELDARANRLARLLISLGVGPGET 279

Query: 73  VAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQ 132
           VA +A     L     AV  AGA    L+    +  LA IL      ++           
Sbjct: 280 VAILADRSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDV 339

Query: 133 NALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQ 192
               +            L  IP+ D        +       +L Y               
Sbjct: 340 GLPGL-------ALDDALSEIPDTDP-------IPQALLGDALAY--------------- 370

Query: 193 PNHECDPISVNYTSGSTGDPKGVVYSHRGA--YLNSLAQISRCDVRDMPVFLWTLDMFRC 250
                    + YTSGSTG PKGV   HR     LN        D  D  + L +L  F  
Sbjct: 371 ---------IIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALASLS-FDA 420

Query: 251 NGWCCTWAMAAVGGINVCIR---TVSAKIIFDSILIHKVTHLCGQPRILNMIANA--SAS 305
           + +    A+   G   V       V    + + +    +T L   P +L ++  A  +  
Sbjct: 421 SVFEIFGALLE-GARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPD 479

Query: 306 DQNQLQRKVIIVIAG---VLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGES 362
             +  +R   ++  G    L  ++ L Q+A     + + YG TE              ++
Sbjct: 480 LISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEAT-----------LDA 528

Query: 363 SALDHEHEMTKH---REGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYF 419
            +     E+         + N  +  +D      ++ +P  G   GE+      + LGY 
Sbjct: 529 PSFPISAELESRVPIGRPVANTQLYILD----QGLRPLP-LG-VPGELYIAGLGLALGYL 582

Query: 420 KNPKATEEAF-RNGWYHTGDLAVRNPDG---YVQMKDRRKDIIISGAEIISSLEVEAVLL 475
             P  T E F     Y TGDLA    DG   Y+  KD +  + I G  I    E+EA L 
Sbjct: 583 NRPDLTAERFIALRLYRTGDLARPLADGALEYLGRKDSQ--VKIRGFRIELG-EIEAALA 639

Query: 476 SNP 478
             P
Sbjct: 640 EQP 642

Length = 642

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 90.9 bits (226), Expect = 3e-19
 Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 3/137 (2%)

Query: 417 GYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLS 476
           GY+ NP+AT E  R+G Y +GDLA R+ DG++    R  D +    E +S+  +E +LL 
Sbjct: 365 GYYNNPEATAERMRHGMYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLR 424

Query: 477 NPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCG--DELPSCMVPRAIFF- 533
           +P +   AV    D+++ +  +A + L++G    P+    F     +L +   PR +   
Sbjct: 425 HPAINRVAVYAVPDERVGDQVMAALVLRDGATFDPDAFAAFLAAQPDLGTKAWPRYVRIA 484

Query: 534 EDIPVNSTGKVQKFVLR 550
            D+P  +T KV K  L 
Sbjct: 485 ADLPSTATNKVLKRELI 501

Length = 540

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 88.5 bits (220), Expect = 5e-19
 Identities = 47/137 (34%), Positives = 68/137 (49%), Gaps = 5/137 (3%)

Query: 414 VMLGYFKNPKATEEAFR--NG--WYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLE 469
           V LGY+K+P+ T + FR  +G  +   GD A    DG + +  R    I +G E +   E
Sbjct: 224 VPLGYYKDPEKTAKTFREIDGVRYAVPGDFARVEADGTITLLGRGSVCINTGGEKVFPEE 283

Query: 470 VEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPR 529
           VE  L ++P V +A VVG  D++  +  VA V+L+ G      EL   C   L    +PR
Sbjct: 284 VEEALKAHPDVADALVVGVPDERWGQRVVAVVQLRAGAGLDLAELRDHCRQHLAGYKLPR 343

Query: 530 AIFFED-IPVNSTGKVQ 545
           AI   D +P   +GK  
Sbjct: 344 AIVVVDTVPRAPSGKAD 360

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 89.5 bits (223), Expect = 9e-19
 Identities = 57/226 (25%), Positives = 91/226 (40%), Gaps = 52/226 (23%)

Query: 24  DFLERAAHVYGDATSIIY--GTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIP 81
             L+R A  Y D  +++Y    +R+++R+ ++    LA  L  L I +GD V   APN+P
Sbjct: 20  QLLDRTAARYPDREALVYRDQGLRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVP 79

Query: 82  ALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIF-------VDYQFVEVVQNA 134
                 FA    GA+L  +N     + L   L Q   K +         DY  V ++   
Sbjct: 80  EWVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDY--VAMLYEL 137

Query: 135 LDILSPNHKCDKAPLLVTIPECDHYQP------------STCSVANNFPSGSLDYNDLLE 182
                              PE    +P                + +    G L++++LL 
Sbjct: 138 ------------------APELATCEPGQLQSARLPELRRVIFLGDEKHPGMLNFDELLA 179

Query: 183 MGKAD--------FEMMQPNHECDPISVNYTSGSTGDPKGVVYSHR 220
           +G+A            + P+   DPI++ YTSG+TG PKG   +HR
Sbjct: 180 LGRAVDDAELAARQATLDPD---DPINIQYTSGTTGFPKGATLTHR 222

Length = 559

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score = 89.2 bits (221), Expect = 1e-18
 Identities = 131/527 (24%), Positives = 217/527 (41%), Gaps = 46/527 (8%)

Query: 47  SWRQTHQICLKLAS-ALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLD 105
           ++R+  Q+  + A+  L +L++ +GD VA M PN        F V  AG  +  +N    
Sbjct: 52  TYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVVNVNPLYT 111

Query: 106 SATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPL--LVTIPECDHYQPST 163
              L   L    A ++ V   F   VQ  +   +P  +     L  ++  P+        
Sbjct: 112 PRELKHQLIDSGASVLVVIDNFGTTVQQVI-ADTPVKQVITTGLGDMLGFPKAALVNFVV 170

Query: 164 CSVANNFP----SGSLDYNDLLEMG-KADFEMMQPNHECDPISVNYTSGSTGDPKGVVYS 218
             V    P    +G++ + + L +G K     +Q   + D   + YT G+TG  KG + +
Sbjct: 171 KYVKKLVPEYRINGAIRFREALALGRKHSMPTLQIEPD-DIAFLQYTGGTTGVAKGAMLT 229

Query: 219 HR---------GAYLNSLAQISR-CDVRDMPVFLWTLDMFRCNGWCCTWAMAAVGGINVC 268
           HR           +L    ++   C+V    + L+ +     NG         +GG N  
Sbjct: 230 HRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIFALTANGL----VFMKIGGCNHL 285

Query: 269 IRTVSAKIIFDSILIH-KVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEV 327
           I        F   L   + T   G   + N + N    DQ       + +  G+     V
Sbjct: 286 ISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQIDFSSLKMTLGGGMAVQRSV 345

Query: 328 LEQVANF-GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGV 386
            E+     G  +  AYG+TE           P    + L       K   G   L I   
Sbjct: 346 AERWKQVTGLTLVEAYGLTET---------SPAACINPLT-----LKEYNGSIGLPIPST 391

Query: 387 DVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAF-RNGWYHTGDLAVRNPD 445
           D   ++   +V   G+ +GE+  +   VM GY+K P+ T +    +GW HTGD+A  +  
Sbjct: 392 DACIKDDAGTVLAIGE-IGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGDIARMDEQ 450

Query: 446 GYVQMKDRRKDII-ISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLK 504
           G+V + DR+KD+I +SG  +  + E+E V+   P VLE A VG  D++  E+ V  V +K
Sbjct: 451 GFVYIVDRKKDMILVSGFNVYPN-EIEDVIAMMPGVLEVAAVGVPDEKSGEI-VKVVIVK 508

Query: 505 EGREASPEELVTFCGDELPSCMVPRAI-FFEDIPVNSTGKVQKFVLR 550
           +    + E++       L     PR I F +++P  + GK+ +  LR
Sbjct: 509 KDPALTAEDVKAHARANLTGYKQPRIIEFRKELPKTNVGKILRRELR 555

Length = 560

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score = 87.3 bits (217), Expect = 2e-18
 Identities = 110/475 (23%), Positives = 162/475 (34%), Gaps = 122/475 (25%)

Query: 57  KLASAL-AQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQ 115
           +LA  L A   +  GD VA +      L     AV  AGA    L+    +  LA IL  
Sbjct: 11  RLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILED 70

Query: 116 LEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTC-SVANNFPSGS 174
             A+++  D      +                 +L+   E      +      +      
Sbjct: 71  AGARLLLTDSALASRLAGL----------VLPVILLDPLELAALDDAPAPPPPDAPSGPD 120

Query: 175 LDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCD 234
                                  D   V YTSGSTG PKGVV +HR   +N LA ++R  
Sbjct: 121 -----------------------DLAYVIYTSGSTGRPKGVVVTHRSL-VNLLAWLARRY 156

Query: 235 VR--------------DMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCI-----RTVSAK 275
                           D  V     ++F           A + G  + +         A 
Sbjct: 157 GLDPDDRVLQFASLSFDASVE----EIF----------GALLAGATLVVPPEDEERDDAA 202

Query: 276 IIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVANFG 335
           ++   I  H VT L   P +L ++A   A+    L    ++++ G   T  ++++    G
Sbjct: 203 LLAALIAEHPVTVLNLTPSLLALLA---AALPPALASLRLVILGGEALTPALVDRWRARG 259

Query: 336 FNIR--HAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNT 393
              R  + YG TE     +         S+A   + +    RE    +   G  +   NT
Sbjct: 260 PGARLINLYGPTET---TVW--------STATLVDPDDA-PRESPVPI---GRPLA--NT 302

Query: 394 --------MKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNG---------WYHT 436
                   ++ VP  G   GE+      V  GY   P+ T E F             Y T
Sbjct: 303 RLYVLDDDLRPVP-VGVV-GELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRT 360

Query: 437 GDLAVRNPDG---YVQMKDRRKD--IIISGAEIISSL-EVEAVLLSNPKVLEAAV 485
           GDL    PDG   ++     R D  + I G  I   L E+EA LL +P V EA V
Sbjct: 361 GDLVRYLPDGNLEFLG----RIDDQVKIRGYRI--ELGEIEAALLRHPGVREAVV 409

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score = 86.5 bits (215), Expect = 6e-18
 Identities = 54/186 (29%), Positives = 82/186 (44%), Gaps = 32/186 (17%)

Query: 333 NFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQN 392
             G  I   YGMTE    + +      G+             R G     I GV++K   
Sbjct: 297 KLGLPICEGYGMTENFAYSTL---NYPGDR------------RIGTVGKPIPGVELKISE 341

Query: 393 TMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFR-NGWYHTGDLAVRNPDGYVQMK 451
                       GE++ R+  +M GY+K+P+ T EAF  +GW HTGD    + DG++++ 
Sbjct: 342 D-----------GEILIRSPGLMSGYYKDPEKTAEAFTEDGWLHTGDKGEIDEDGFLKIT 390

Query: 452 DRRKDII-ISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREAS 510
            R K++   S  + ++   +E +L +NP V +  VVG    Q    PVA V L E  +  
Sbjct: 391 GRVKELFKTSKGKYVAPAPIENLLSANPHVEQVCVVGSGLPQ----PVALVVLSEAADPL 446

Query: 511 PEELVT 516
             E V 
Sbjct: 447 EREEVE 452

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 85.8 bits (213), Expect = 1e-17
 Identities = 87/328 (26%), Positives = 126/328 (38%), Gaps = 76/328 (23%)

Query: 198 DPISVNYTSGSTGDPKGVVYSHRG--AYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCC 255
           DP  +  TSGSTG PK VV +HR   A      Q++     D  V L             
Sbjct: 168 DPALLLLTSGSTGVPKCVVLTHRNILARSAGTVQVNGFTPDD--VSL------------- 212

Query: 256 TW-AMAAVGGI------NVC--IRTVSAKIIFDSILI-----------HKVTHLCGQPRI 295
            W  +  VGGI      +V    + +      D IL            ++VT        
Sbjct: 213 NWMPLDHVGGIVMLHLRDVYLGCQQIHVPT--DYILADPLRWLDLIDRYRVTITWAPNFA 270

Query: 296 LNMIANASASDQNQ---LQRKVIIVIAG---VLPTI-EVLEQVANFGFN---IRHAYGMT 345
             ++ +A    +++   L     I+ AG   V  TI   LE +A +G     IR A+GM+
Sbjct: 271 FALLNDALERIEDRSWDLSSLRYIINAGEAVVAKTIRRFLELLAPYGLPADAIRPAFGMS 330

Query: 346 EV-----------LGPAIVRQWKPEGESSALDHEHEMTKHREGLNNL--LIQGVD---VK 389
           E             GP        +  +  L               L   I GV    V 
Sbjct: 331 ETCSGVTYSRGFRTGPDTGGVLV-DSLTGPLRFAAADHPEAVTFVELGRPIPGVAIRIVD 389

Query: 390 QQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFR-NGWYHTGDLA-VRNPDGY 447
           +      +P     +G +  R  TV  GY++NP+A  EAF  +GW+ TGDL  +   DG 
Sbjct: 390 EDG--ALLPEG--EVGRLQVRGPTVTSGYYRNPEANAEAFTEDGWFRTGDLGFLH--DGR 443

Query: 448 VQMKDRRKD-IIISGAEIISSLEVEAVL 474
           + +  R KD III+G    +  E+EA +
Sbjct: 444 LTITGREKDMIIINGVNYYNH-EIEAAV 470

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 84.7 bits (210), Expect = 2e-17
 Identities = 76/340 (22%), Positives = 129/340 (37%), Gaps = 37/340 (10%)

Query: 198 DPISVNYTSGSTGDPKGVVYSHR--GAYLNSLAQ---ISRCDVRDMPVFLWTLDMFRCNG 252
           DP ++ +TSGSTG PKGVVY+HR   A +++L     I   D RD+  F      F   G
Sbjct: 86  DPAAILFTSGSTGPPKGVVYTHRTFAAQIDALRSLYGIREGD-RDLAAFP----PFALFG 140

Query: 253 WCCTWAMAAVGGINV-CIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQ 311
                    +  ++      +    +  +I     + + G P +L  +A     +  QL 
Sbjct: 141 -PALGVTTVIPAMDPTAPAALDPAKLAQAIREIGASCVFGSPALLKNVARYCEENGIQLP 199

Query: 312 RKVIIVIAGVLPTIEVLEQVANF---GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHE 368
               ++ AG     ++L +          I   YG TE L  A +       E   +  E
Sbjct: 200 SLRRVLSAGAPVPPDLLRRFVANLMPEAEIHTPYGATEALPVASI-------EGREVLAE 252

Query: 369 H-EMTKHREGLN-NLLIQGVDVK-QQNTMKSVPHDGKTL-------GEVMFRANTVMLGY 418
             E  +   G+     + G+DV+        +      +       GE++     V   Y
Sbjct: 253 SAEPPEAGAGVCVGHPVPGIDVRIIPIDDGPIASWDDDIELPPGEVGEIIVSGPHVTREY 312

Query: 419 FKNPKATEEA----FRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVL 474
           +  P+AT+ A        W+  GDL   +  G +    R+   + +    + ++ VE V 
Sbjct: 313 YNRPEATKLAKISDGNRIWHRMGDLGYFDDQGRLWFCGRKAHRVETAGGTLFTVPVEQVF 372

Query: 475 LSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEEL 514
             +P V  +A+VG V     + PV  V+         + L
Sbjct: 373 NRHPGVRRSALVG-VGKPGTQAPVLVVEPMPPVLDRRKRL 411

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional

 Score = 85.2 bits (212), Expect = 2e-17
 Identities = 48/124 (38%), Positives = 69/124 (55%), Gaps = 6/124 (4%)

Query: 432 GWYHTGDLAVRNPDGYVQMKDRRKDII-ISGAEIISSLEVEAVLLSNPKVLEAAVVGKVD 490
           G Y TGD A R+ DGY  +  R  D++ +SG  +  + E+E+ L+++PKV EAAVVG+ D
Sbjct: 483 GMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRL-GTAEIESALVAHPKVAEAAVVGRPD 541

Query: 491 DQLKEVPVAFVKLKEGREASPE---ELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQK 546
           D   +   AFV LK G E S E   EL  +   E+     P  I F   +P   +GK+ +
Sbjct: 542 DIKGQGIYAFVTLKGGEEPSDELRKELRNWVRKEIGPIAKPDVIQFAPGLPKTRSGKIMR 601

Query: 547 FVLR 550
            +LR
Sbjct: 602 RILR 605

Length = 637

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 84.6 bits (210), Expect = 3e-17
 Identities = 48/133 (36%), Positives = 68/133 (51%), Gaps = 5/133 (3%)

Query: 416 LGYFKNPKATEEAFR--NG--WYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVE 471
           LGY+K+P+ T E F   +G  +   GD A    DG + +  R    I +G E +   EVE
Sbjct: 388 LGYYKDPEKTAETFPTIDGVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEEVE 447

Query: 472 AVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAI 531
             L ++P V +A VVG  D++  +  VA V+L+EG      EL   C   L    VPRAI
Sbjct: 448 EALKAHPDVADALVVGVPDERWGQEVVAVVQLREGARPDLAELRAHCRSSLAGYKVPRAI 507

Query: 532 FFED-IPVNSTGK 543
           +F D +  +  GK
Sbjct: 508 WFVDEVQRSPAGK 520

Length = 533

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 83.8 bits (208), Expect = 3e-17
 Identities = 96/396 (24%), Positives = 145/396 (36%), Gaps = 91/396 (22%)

Query: 198 DPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFL----WTLDMFRCNGW 253
           DP  V YTSGSTG PKGVV +HR       A+ +   +R     L       D+      
Sbjct: 100 DPAYVIYTSGSTGKPKGVVITHRNICNFLRAEGAILGIRPGDRVLQFASIAFDV------ 153

Query: 254 CC--TWAMAAVGGINVCIRTVSAKI--IFDSILIHKVTHLCGQPRILNMIANASASDQNQ 309
                +     GG  + I     ++  + + +   +VT     P +L ++          
Sbjct: 154 SILEIFTTLLAGG-TLVIPPEELRLEDLAEFLNRLRVTVAHLTPSLLALLDPEDVPS--- 209

Query: 310 LQRKVIIVIAGVLP--TIEVLEQVANFGFNIRHAYGMTE--VLGPAIVRQW-------KP 358
              + +I+     P   ++   +      N    YG TE  V   A            +P
Sbjct: 210 --LRTLILGGEACPQALVDRWSKPRRL-LN---TYGPTEATVTATASRLTPGKPVNIGRP 263

Query: 359 EGESSA--LDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVML 416
               +   LD           L  L+  G                  +GE+      V  
Sbjct: 264 LPNYTCWVLD---------PDLEPLVPIG-----------------AVGELCIGGPGVAR 297

Query: 417 GYFKNPKATEEAFRNG--W--------YHTGDLAVRNPDG---YVQMKDRRKD--IIISG 461
           GY   P+ T E F     W        Y TGDL     DG   ++     RKD  + I G
Sbjct: 298 GYLNRPELTAEKFIPDPFWLNNPGGRIYRTGDLVRYLEDGSLEFL----GRKDDQVKIRG 353

Query: 462 AEI-ISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASP-----EELV 515
             I +   E+EAVL + P V+ AAVV  +DD   +  VAF+ +       P       L 
Sbjct: 354 QRIELG--EIEAVLRALPGVVVAAVVLLLDDPGGKQLVAFLAVDGAAGGEPADVDIALLR 411

Query: 516 TFCGDELPSCMVPRA-IFFEDIPVNSTGKVQKFVLR 550
           +   + LPS MVP   +  +++P+ ++GKV +  LR
Sbjct: 412 SALRERLPSYMVPSVYVPLDELPLTASGKVDRKALR 447

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 83.4 bits (207), Expect = 5e-17
 Identities = 48/141 (34%), Positives = 67/141 (47%), Gaps = 14/141 (9%)

Query: 414 VMLGYFKNPKATEEAF-----RNG--WYHTGDLAVRNPDGYVQMKDRRKDII-ISGAEII 465
           + LGY   P+ T E F       G   Y TGDLA   PDG ++   R    + I G  I 
Sbjct: 333 LALGYLNRPELTAERFVPDPFGPGERLYRTGDLARWRPDGNIEFLGRIDRQVKIRGFRI- 391

Query: 466 SSL-EVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPS 524
             L E+E  LL +P V EAAV+ + D    +  VA+V           EL     + LP+
Sbjct: 392 -ELGEIEQALLQHPGVREAAVLVREDAAGDKRLVAYVVA--RGALDAAELRAHLAERLPA 448

Query: 525 CMVPRA-IFFEDIPVNSTGKV 544
            MVP A +  +++P+ + GKV
Sbjct: 449 YMVPAAFVVLDELPLTANGKV 469

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 82.3 bits (204), Expect = 1e-16
 Identities = 47/139 (33%), Positives = 65/139 (46%), Gaps = 11/139 (7%)

Query: 414 VMLGYFKNPKATEEAF---RNG--WYHTGDLAVRNPDGYVQMKDRRKD--IIISGAEIIS 466
           V LGY+ +P+ T E F   R G   Y TGDL    PDG ++   R  D  + I G  +  
Sbjct: 336 VALGYWGDPELTAERFITHRTGERLYRTGDLGRYRPDGTIEFLGR-ADHQVKIRGYRV-E 393

Query: 467 SLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCM 526
             E+EA L  +P V  A VV  V D   +   AFV  ++G       L     + LP+ M
Sbjct: 394 LGEIEAALARHPGVQRAVVVV-VGDGGAKALAAFVVAEDGAAVDAAVLRAALAELLPAYM 452

Query: 527 VPRAIFF-EDIPVNSTGKV 544
           VP      + +P+ + GKV
Sbjct: 453 VPSRFVVLDALPLTANGKV 471

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 82.3 bits (204), Expect = 1e-16
 Identities = 93/401 (23%), Positives = 156/401 (38%), Gaps = 50/401 (12%)

Query: 191 MQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFL-W---TLD 246
              +   D   + ++SGSTG+PKGV+ +H+    N  A I   ++    VFL W   T D
Sbjct: 100 SLLSLPDDIAFIQFSSGSTGEPKGVILTHKNLLTNIEAIIEAAEITSEDVFLSWMPLTHD 159

Query: 247 MFRCNGWCCTWAMAAVGGINVCIRTVSAKII-----FDSILIHKVTHLC----GQPRILN 297
           M    G           GIN  +      I       D    H+ T L     G   +L 
Sbjct: 160 M----GLIGFHLTPTALGINQYLMPTRLFIRRPLLWLDKASQHRATILSSPNFGYKYLLK 215

Query: 298 MIANASASDQNQLQRKVIIVIAG-VLPTI--EVLEQVANFGFN---IRHAYGMTEVLGPA 351
                   D +    ++I   A  +   +  E LE++A FG     +   YG+ E     
Sbjct: 216 HFKTEKIIDWDLSSVRLIFNGAEPISADLCEEFLEKMAPFGLRPNAMYPVYGLAEATLAV 275

Query: 352 IVRQWKPEGESSALDHEH----EMTKHREGLNNLLIQGVDVKQ---QNTMKSVPHDGK-- 402
              +     ++  LD  H          +  N+  I  V+V        ++ V   G+  
Sbjct: 276 SFPKPGEPFKTVCLDRNHLKVGVKIIEIDPKNSDAISFVEVGSPIDGCEIRIVDDAGEVL 335

Query: 403 ---TLGEVMFRANTVMLGYFKNPKATEEAF-RNGWYHTGDLAVRNPDGYVQMKDRRKDII 458
              T+G +  + + V  GY+ NP+AT+++   +GW  TGDL     +G + +  R KDII
Sbjct: 336 PDRTIGHIQIKGDNVTSGYYNNPEATKKSITPDGWLKTGDLGFLR-NGRLVITGRAKDII 394

Query: 459 ISGAEIISSLEVEAVLLSNPKVL--EAAVVGKVDDQLK-EVPVAFVKLKEGREASPEELV 515
           I   +     ++E V      +     A  G  D++ + E  V FV+ ++    S ++  
Sbjct: 395 IVNGQNYYPHDIERVAEQVEGIKLGRVAACGVYDEKEQSEEVVIFVEYRQ----SLDDFT 450

Query: 516 TFCGD---ELPSCM---VPRAIFFEDIPVNSTGKVQKFVLR 550
                    +   M   +   I    IP  ++GK+Q++ L 
Sbjct: 451 PLALKIKRHVNKKMGLNIDHVIPVRSIPKTTSGKIQRYKLA 491

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 81.5 bits (202), Expect = 2e-16
 Identities = 52/162 (32%), Positives = 73/162 (45%), Gaps = 15/162 (9%)

Query: 394 MKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNG--------WYHTGDLAVRNPD 445
           ++ VP  G   GE+    + V  GY   P+ T E F            Y TGDL    PD
Sbjct: 276 LQPVPP-GVP-GELYIGGDGVARGYLGRPELTAERFVPDPFDDPGGRLYRTGDLVRWRPD 333

Query: 446 GYVQMKDRRKD-IIISGAEIISSL-EVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKL 503
           G ++   R  D + I G  I   L E+EA L ++P V +A VV + +    +  VA+V  
Sbjct: 334 GRLEYLGRADDQVKIRGFRI--ELGEIEAALRAHPGVADAVVVVREEGPGDQRLVAYVVP 391

Query: 504 KEGREASPEELVTFCGDELPSCMVPRAIF-FEDIPVNSTGKV 544
           K G     E L       LP+ MVP A    +++P+   GKV
Sbjct: 392 KAGAAPDAEALRAALRATLPAYMVPAAFVQLDELPLTPNGKV 433

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 81.6 bits (202), Expect = 2e-16
 Identities = 49/154 (31%), Positives = 67/154 (43%), Gaps = 14/154 (9%)

Query: 405 GEVMFRANTVMLGYFKNPKATEEAFR-NGW--------YHTGDLAVRNPDGYVQMKDRRK 455
           GE+      V  GY   P+ T E F  N +        Y TGDL  R  DG ++   R  
Sbjct: 295 GELYIGGAGVARGYLGRPELTAERFLPNPFAGSPGERLYRTGDLVRRRADGQLEYLGRID 354

Query: 456 D-IIISGAEIISSL-EVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEE 513
           D + + G  I   L E+EA L S P V EA VV   D       VA++    G     E+
Sbjct: 355 DQVKVRGFRI--ELGEIEAALRSIPGVAEAVVVAIGDAAGDRQLVAYIVADPGAAIDIED 412

Query: 514 LVTFCGDELPSCMVP-RAIFFEDIPVNSTGKVQK 546
           L       LP+ MVP R +  + +P+   GK+ +
Sbjct: 413 LRARLATRLPAYMVPSRFVRLDALPLTPNGKIDR 446

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score = 81.6 bits (201), Expect = 2e-16
 Identities = 128/529 (24%), Positives = 208/529 (39%), Gaps = 78/529 (14%)

Query: 47  SWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDS 106
           S+RQ       LA  L    +  GD+VA ++ N P    + +A   +G  ++A+N  L +
Sbjct: 26  SYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAINHHLTA 85

Query: 107 ATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSV 166
                I+    A+++        V   ALD L+     D    L    E D +     ++
Sbjct: 86  PEADYIVGDSGARVL--------VASAALDGLAAKVGADLPLRLSFGGEIDGFGSFEAAL 137

Query: 167 ANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRG----- 221
           A   P        L E         QP   C  + + Y+SG+TG PKG+     G     
Sbjct: 138 AGAGPR-------LTE---------QP---CGAVML-YSSGTTGFPKGIQPDLPGRDVDA 177

Query: 222 ------AYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCIRTVSAK 275
                 A   +   IS  D+      ++     R   WC    + A+GG  V  +   A+
Sbjct: 178 PGDPIVAIARAFYDISESDIYYSSAPIYHAAPLR---WCSM--VHALGGTVVLAKRFDAQ 232

Query: 276 IIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIE-VLEQVANF 334
                +  +++T     P +   +    A  + +            + ++  V+   A  
Sbjct: 233 ATLGHVERYRITVTQMVPTMFVRLLKLDADVRTRYD----------VSSLRAVIHAAAPC 282

Query: 335 GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQG-VDVKQQNT 393
             +++HA  M + LGP IV ++    E+      H MT      + L   G V       
Sbjct: 283 PVDVKHA--MIDWLGP-IVYEYYSSTEA------HGMTFIDSP-DWLAHPGSVGRSVLGD 332

Query: 394 MKSVPHDGKTL-----GEVMFRANTVMLGYFKNPKATEEAFRNG---WYHTGDLAVRNPD 445
           +     DG  L     G V F  + +   Y  +P+ T  A       W   GDL   + D
Sbjct: 333 LHICDDDGNELPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDED 392

Query: 446 GYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKE 505
           GY+ + DR+  +IISG   I   E E  L  +P V + AV+G  D ++ E   A ++L E
Sbjct: 393 GYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVE 452

Query: 506 GREASPE---ELVTFCGDELPSCMVPRAI-FFEDIPVNSTGKVQKFVLR 550
           G   S E   EL+ +    +     PR++ F +++P   TGK+ K +LR
Sbjct: 453 GIRGSDELARELIDYTRSRIAHYKAPRSVEFVDELPRTPTGKLVKGLLR 501

Length = 501

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score = 81.0 bits (200), Expect = 3e-16
 Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 5/135 (3%)

Query: 417 GYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLS 476
           GY        E   +GW    D+   + +G++ +  R K++I+ G   I   E+E+VL  
Sbjct: 346 GYIIGGVLARELNADGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHE 405

Query: 477 NPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED- 535
           +P V E  V+G  D    E PVA +K   G     ++L +FC   L S  +P+   F D 
Sbjct: 406 HPAVDEIVVIGVPDSYWGEKPVAIIK---GSATK-QQLKSFCLQRLSSFKIPKEWHFVDE 461

Query: 536 IPVNSTGKVQKFVLR 550
           IP  ++GK+ +   +
Sbjct: 462 IPYTNSGKIARMEAK 476

Length = 487

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 81.2 bits (201), Expect = 4e-16
 Identities = 56/168 (33%), Positives = 87/168 (51%), Gaps = 15/168 (8%)

Query: 397 VPHDGKTLGEVMFRANTVMLGYFKNPKATEEAF-RNGWYHTGDLAVRNPDGYVQMKDRRK 455
           +P  G+  G +M R      GY+K+P+    AF  NG+Y +GDL   +PDGY+ +  R K
Sbjct: 375 LPQ-GEV-GRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYITVVGREK 432

Query: 456 DIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELV 515
           D I  G E I++ E+E +LL +P V+ AA+V   D+ + E   AF+ +KE       +L 
Sbjct: 433 DQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKE--PLKAVQLR 490

Query: 516 TFCGDE------LPSCMVPRAIFFEDIPVNSTGKVQKFVLRGKVNATA 557
            F  ++      LP     R    + +P+ + GKV K  LR  + + A
Sbjct: 491 RFLREQGIAEFKLPD----RVECVDSLPLTAVGKVDKKQLRQWLASRA 534

Length = 536

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score = 80.6 bits (199), Expect = 6e-16
 Identities = 61/211 (28%), Positives = 100/211 (47%), Gaps = 36/211 (17%)

Query: 307 QNQLQRKVIIVIAGVLP---TIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESS 363
           + +L  ++ ++I+G  P    IE   +V +  F ++  YG+TE LGP            +
Sbjct: 378 KAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQ-GYGLTETLGP------------T 424

Query: 364 ALDHEHEMTKHREGLNNLL--IQGVDVKQQNTMKSVPHDG------KTLGEVMFRANTVM 415
            L    EM         +L  +    V  +  ++ VP  G         GE+  R   + 
Sbjct: 425 TLGFPDEMC--------MLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLF 476

Query: 416 LGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDII-ISGAEIISSLEVEAVL 474
            GY+KNP+ TEE  ++GW+HTGD+    P+G +++ DR+K++I +S  E ++   +E V 
Sbjct: 477 SGYYKNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVY 536

Query: 475 LSNPKVLEAAVVGKVDDQLKEVPVAFVKLKE 505
             NP V +  V G   D  K + VA V   E
Sbjct: 537 GQNPIVEDIWVYG---DSFKSMLVAVVVPNE 564

Length = 660

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 80.3 bits (199), Expect = 7e-16
 Identities = 92/370 (24%), Positives = 143/370 (38%), Gaps = 69/370 (18%)

Query: 184 GKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQIS--------RCDV 235
             A F M     + D  ++ +TSGSTG PKGVVY+H        AQI             
Sbjct: 162 AAAPFPMADLAPD-DMAAILFTSGSTGTPKGVVYTHG----MFEAQIEALREDYGIEPGE 216

Query: 236 RDMPVF-LWTLDMFRCNGWCCTWAMAAVGGINVCI--------RTVSAKIIFDSILIHKV 286
            D+P F L+ L  F   G      M +V      I         TV    +F +I  + V
Sbjct: 217 IDLPTFPLFAL--F---GPAL--GMTSV------IPDMDPTRPATVDPAKLFAAIERYGV 263

Query: 287 THLCGQPRILNMIANASASDQNQLQ--RKVIIVIAGVLPTIEVLE---QVANFGFNIRHA 341
           T+L G P +L  +     ++  +L   R+VI   AG    I V+E    +      I   
Sbjct: 264 TNLFGSPALLERLGRYGEANGIKLPSLRRVI--SAGAPVPIAVIERFRAMLPPDAEILTP 321

Query: 342 YGMTEVLGPAIVRQWKPEGESSALDHEH-EMTKHREGLNNLL---IQGVDVK-QQNTMKS 396
           YG TE L  + +       ES  +       T    G    +   + GV+V+    +   
Sbjct: 322 YGATEALPISSI-------ESREILFATRAAT--DNGAGICVGRPVDGVEVRIIAISDAP 372

Query: 397 VPHDGKTL-------GEVMFRANTVMLGYFKNPKATEEA-----FRNGWYHTGDLAVRNP 444
           +P     L       GE++     V   Y+  P+AT  A       + W+  GDL   + 
Sbjct: 373 IPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDA 432

Query: 445 DGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLK 504
            G +    R+   + +    + ++  E +  ++P V  +A+VG V     + PV  V+L+
Sbjct: 433 QGRLWFCGRKAHRVETAGGTLYTIPCERIFNTHPGVKRSALVG-VGVPGAQRPVLCVELE 491

Query: 505 EGREASPEEL 514
            G   S   L
Sbjct: 492 PGVACSKSAL 501

Length = 552

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 79.8 bits (197), Expect = 2e-15
 Identities = 98/369 (26%), Positives = 146/369 (39%), Gaps = 38/369 (10%)

Query: 202  VNYTSGSTGDPKGVVYSHRG--AYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAM 259
            V YTSGSTG PKGV  SH     Y+  +A+  +    D  + + +   F         A+
Sbjct: 661  VIYTSGSTGQPKGVAISHGALANYVCVIAERLQLAADDS-MLMVSTFAFDLGVTELFGAL 719

Query: 260  AAVGGINVCIRTV--SAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIV 317
            A+   +++        A+     +    VT L   P  L  +  AS     + QR +  V
Sbjct: 720  ASGATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQALLQASRVALPRPQRAL--V 777

Query: 318  IAGVLPTIEVLEQVANFGFNIR--HAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHR 375
              G    +++L +V   G   R  + YG TE      V       E S  + +       
Sbjct: 778  CGGEALQVDLLARVRALGPGARLINHYGPTE----TTV--GVSTYELSDEERDFGNVPIG 831

Query: 376  EGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAF------ 429
            + L NL +  +D    + +  VP     +GE+      +  GY + P  T E F      
Sbjct: 832  QPLANLGLYILD----HYLNPVP--VGVVGELYIGGAGLARGYHRRPALTAERFVPDPFG 885

Query: 430  RNG--WYHTGDLAVRNPDGYVQMKDRRKD-IIISGAEIISSLEVEAVLLSNPKVLEAAVV 486
             +G   Y TGDLA    DG ++   R    + I G  I    E+EA LL+ P V EA V+
Sbjct: 886  ADGGRLYRTGDLARYRADGVIEYLGRMDHQVKIRGFRIELG-EIEARLLAQPGVREAVVL 944

Query: 487  ---GKVDDQLKE--VPVAFVKLKEGREASPEELVTFCGDELPSCMVP-RAIFFEDIPVNS 540
               G    QL    VP A     E +    +EL       LP  MVP   +  + +P+  
Sbjct: 945  AQPGDAGLQLVAYLVPAAVADGAEHQATR-DELKAQLRQVLPDYMVPAHLLLLDSLPLTP 1003

Query: 541  TGKVQKFVL 549
             GK+ +  L
Sbjct: 1004 NGKLDRKAL 1012

Length = 3956

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 79.6 bits (196), Expect = 2e-15
 Identities = 86/391 (21%), Positives = 129/391 (32%), Gaps = 31/391 (7%)

Query: 171  PSGSLDYNDLLEMGKADFEMMQPNHECDPIS---VNYTSGSTGDPKGVVYSHRGAYLNSL 227
            P         L+ G  ++    P     P +   V YTSGSTG PKGV   H     +  
Sbjct: 3167 PLAQGVQVLDLDRGDENYAEANPAIRTMPENLAYVIYTSGSTGKPKGVGIRHSALSNHLC 3226

Query: 228  AQISRCDVR-DMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKV 286
                   +     V  +T   F        W + +   + +              LI+  
Sbjct: 3227 WMQQAYGLGVGDRVLQFTTFSFDVFVEELFWPLMSGARVVLAGPEDWRDPALLVELINS- 3285

Query: 287  THLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTE 346
              +       +M+      +       +  ++ G       L+Q    G  + + YG TE
Sbjct: 3286 EGVDVLHAYPSMLQAFLEEEDAHRCTSLKRIVCGGEALPADLQQQVFAGLPLYNLYGPTE 3345

Query: 347  VLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGE 406
                    Q   EG+ +              + N     +D   +      P     LGE
Sbjct: 3346 ATITVTHWQCVEEGKDAVPIGR--------PIANRACYILDGSLE------PVPVGALGE 3391

Query: 407  VMFRANTVMLGYFKNPKATEEAFRNG-------WYHTGDLAVRNPDGYVQMKDRRKDIII 459
            +      +  GY   P  T E F           Y TGDLA    DG ++   R    + 
Sbjct: 3392 LYLGGEGLARGYHNRPGLTAERFVPDPFVPGERLYRTGDLARYRADGVIEYIGRVDHQVK 3451

Query: 460  SGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCG 519
                 I   E+EA LL +P V EA V+     QL    VA+V  ++      E L     
Sbjct: 3452 IRGFRIELGEIEARLLEHPWVREAVVLAVDGRQL----VAYVVPEDEAGDLREALKAHLK 3507

Query: 520  DELPSCMVP-RAIFFEDIPVNSTGKVQKFVL 549
              LP  MVP   +F E +P+   GK+ +  L
Sbjct: 3508 ASLPEYMVPAHLLFLERMPLTPNGKLDRKAL 3538

Length = 5163

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 79.2 bits (195), Expect = 3e-15
 Identities = 132/560 (23%), Positives = 189/560 (33%), Gaps = 124/560 (22%)

Query: 35   DATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAG 94
            +A ++++G    S+ +      +LA  L    +     VA  A     L     AV  AG
Sbjct: 2018 EAIAVVFGDQHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAG 2077

Query: 95   AVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIP 154
                 L+    +  LA +L    A ++                L+  H  ++ PL   + 
Sbjct: 2078 GAYVPLDPNYPAERLAYMLEDSGAALL----------------LTQRHLLERLPLPAGVA 2121

Query: 155  ECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPIS---VNYTSGSTGD 211
                                L  +   E   AD+    P  +    +   V YTSGSTG 
Sbjct: 2122 -------------------RLPLDRDAEW--ADYPDTAPAVQLAGENLAYVIYTSGSTGL 2160

Query: 212  PKGVVYSHRG--AYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCI 269
            PKGV  SH    A+  +  +       D     +    F          +    G  V I
Sbjct: 2161 PKGVAVSHGALVAHCQAAGERYELSPADC-ELQFMSFSFDGAHEQWFHPLLN--GARVLI 2217

Query: 270  RTVS---AKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIE 326
            R       + ++D +  H VT L   P  L  +A  +  D      +V       +P   
Sbjct: 2218 RDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERDGRPPAVRVYCFGGEAVPA-A 2276

Query: 327  VLEQV-----ANFGFNIRHAYGMTE-VLGPAIVRQWK-----PEGESSA----------- 364
             L          + FN    YG TE V+ P +   WK     P G +             
Sbjct: 2277 SLRLAWEALRPVYLFN---GYGPTEAVVTPLL---WKCRPQDPCGAAYVPIGRALGNRRA 2330

Query: 365  --LDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNP 422
              LD           LN LL  G+                  GE+      +  GY   P
Sbjct: 2331 YILD---------ADLN-LLAPGM-----------------AGELYLGGEGLARGYLNRP 2363

Query: 423  KATEEAF------RNG--WYHTGDLAVRNPDGYVQMKDR-RKDIIISGAEIISSLEVEAV 473
              T E F       +G   Y TGDLA    DG V+   R    + I G  I    E+EA 
Sbjct: 2364 GLTAERFVPDPFSASGERLYRTGDLARYRADGVVEYLGRIDHQVKIRGFRIELG-EIEAR 2422

Query: 474  LLSNPKVLEAAVV---GKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRA 530
            L ++P V EA VV   G    QL    VA+V   +  E    EL  +    LP+ MVP  
Sbjct: 2423 LQAHPAVREAVVVAQDGASGKQL----VAYVVPDDAAEDLLAELRAWLAARLPAYMVPAH 2478

Query: 531  -IFFEDIPVNSTGKVQKFVL 549
             +  E +P+N  GK+ +  L
Sbjct: 2479 WVVLERLPLNPNGKLDRKAL 2498

Length = 5163

>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional

 Score = 75.4 bits (185), Expect = 2e-14
 Identities = 127/549 (23%), Positives = 198/549 (36%), Gaps = 85/549 (15%)

Query: 19  PLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAP 78
           P T    L   A  +   T+II      S+R+  +    LA  L +  ++ G  V  M  
Sbjct: 37  PYTL---LAVTAARWPGRTAIIDDDGALSYRELQRATESLARRLTRDGVAPGRAVGVMCR 93

Query: 79  NIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDIL 138
           N        FAV + GA +  ++T   S  LA+ LR      +  D +F E +  A D +
Sbjct: 94  NGRGFVTAVFAVGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGADDAV 153

Query: 139 SPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECD 198
           +        P      E    +P+          G +                       
Sbjct: 154 AVID-----PATAGAEESGG-RPAVA------APGRI----------------------- 178

Query: 199 PISVNYTSGSTGDPKGVVYSH--RGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCT 256
              V  TSG+TG PKGV  +   R A    +  + R  +R        + MF   G    
Sbjct: 179 ---VLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGLGML 235

Query: 257 WAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQP----RILNMIANASASDQNQLQR 312
               A+GG  +  R   A+       +H+       P    RIL +     A  +N L +
Sbjct: 236 MLTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRVRA--RNPLPQ 293

Query: 313 KVIIVIAG--VLPTI--EVLEQVANFGFNIRHAYGMTEV-LG----PAIVRQWKPEGESS 363
             +++ +G  + PT+    ++   +  +N    YG TEV +G    PA +R   PE    
Sbjct: 294 LRVVMSSGDRLDPTLGQRFMDTYGDILYNG---YGSTEVGIGALATPADLRDA-PETVGK 349

Query: 364 ALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPK 423
                              + G  V+  +   + P   +  G +          Y     
Sbjct: 350 P------------------VAGCPVRILDR-NNRPVGPRVTGRIFVGGELAGTRY---TD 387

Query: 424 ATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEA 483
              +A  +G   TGD+   +  G + +  R  D+IISG E +    VE  L ++P V + 
Sbjct: 388 GGGKAVVDGMTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADN 447

Query: 484 AVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAI-FFEDIPVNSTG 542
           AV+G  D++      AFV L  G      +L  +  D +     PR I     IP N TG
Sbjct: 448 AVIGVPDERFGHRLAAFVVLHPGSGVDAAQLRDYLKDRVSRFEQPRDINIVSSIPRNPTG 507

Query: 543 KVQKFVLRG 551
           KV +  L G
Sbjct: 508 KVLRKELPG 516

Length = 516

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 75.1 bits (185), Expect = 2e-14
 Identities = 49/165 (29%), Positives = 78/165 (47%), Gaps = 7/165 (4%)

Query: 393 TMKSVPHDGKTL-----GEVMFRANTVML-GYFKNPKATEEAFRNGWYHTGDLAVRNPDG 446
            ++ V  DG+ L     GE+  R        Y   P+   E  R G+  +GD+   + DG
Sbjct: 334 ELRFVDEDGRPLPQGEIGEIYSRIAGNPDFTYHNKPEKRAEIDRGGFITSGDVGYLDADG 393

Query: 447 YVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEG 506
           Y+ + DR++D++ISG   I   E+EAVL + P V + AV G  D +  E  +A V+ + G
Sbjct: 394 YLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPG 453

Query: 507 REASPEELVTFCGDELPSCMVPRAIFFE-DIPVNSTGKVQKFVLR 550
                 ++       L    VP+ I    ++P   +GK+ K  LR
Sbjct: 454 ATLDEADIRAQLKARLAGYKVPKHIEIMAELPREDSGKIFKRRLR 498

Length = 509

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 75.4 bits (186), Expect = 3e-14
 Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 16/152 (10%)

Query: 415 MLGYFKNPKATEEAFRN-------GWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISS 467
           +L  + +     E F+        G+Y TGD   ++ DGY+ +  R  D+I      +S+
Sbjct: 441 LLTLWGDD----ERFKKLYLNKFPGYYDTGDSGYKDEDGYLFVMGRTDDVINVAGHRLST 496

Query: 468 LEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPE----ELVTFCGDELP 523
            E+E  +L +P V E AVVG  D+   +VP+  V LK+  +   +    E+V    +++ 
Sbjct: 497 GEMEESVLKHPDVAECAVVGVRDELKGQVPLGLVVLKDDCKIDADQLENEIVALVREQIG 556

Query: 524 SCMVPRAIFFED-IPVNSTGKVQKFVLRGKVN 554
                R + F   +P   +GK+ +  LR   +
Sbjct: 557 PVAAFRNVVFVKRLPKTRSGKILRRTLRKIAD 588

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 73.8 bits (182), Expect = 8e-14
 Identities = 45/196 (22%), Positives = 76/196 (38%), Gaps = 17/196 (8%)

Query: 24  DFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPAL 83
           D  E  A    D  +++ G  R ++ +  +   +LA  L    +  GD V   A N    
Sbjct: 7   DLFEAVADAVPDRVALVCGDRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEY 66

Query: 84  YKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHK 143
            +       A AV   +N R     L  +L   +A  +  + +F   V   L       +
Sbjct: 67  VEAMLGAFKARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLP------R 120

Query: 144 CDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVN 203
             K   LV + +            N+   G++DY D L  G  + +  + +   D + + 
Sbjct: 121 LPKLRTLVVVEDGS---------GNDLLPGAVDYEDALAAGSPERDFGERSP--DDLYLL 169

Query: 204 YTSGSTGDPKGVVYSH 219
           YT G+TG PKGV++  
Sbjct: 170 YTGGTTGMPKGVMWRQ 185

Length = 533

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score = 71.9 bits (177), Expect = 3e-13
 Identities = 50/187 (26%), Positives = 80/187 (42%), Gaps = 28/187 (14%)

Query: 46  FSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLD 105
           ++W Q      ++A+AL  L +  GD +A ++ N         A+ MAG V   L   L 
Sbjct: 7   YTWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVPLYPTLT 66

Query: 106 SATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCS 165
           + T+  +L   +AK +FV           LD    +    KA +   +P    +  ST  
Sbjct: 67  AETIRYVLEHSDAKALFVG---------KLD----DWDAMKAGVPEGLPTIILFPYST-- 111

Query: 166 VANNFPSGSLDYNDLLEMGKADFEMMQPNHECDP---ISVNYTSGSTGDPKGVVYSHRGA 222
              +       ++DLL    A  E +Q     +P    ++ YTSG+TG PKGV+ S  GA
Sbjct: 112 -LKDHY----KWDDLL----AATEPLQGRPLPEPEDLATIVYTSGTTGQPKGVMLSF-GA 161

Query: 223 YLNSLAQ 229
           +  +   
Sbjct: 162 FAFAAQG 168

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 71.3 bits (175), Expect = 4e-13
 Identities = 53/166 (31%), Positives = 71/166 (42%), Gaps = 15/166 (9%)

Query: 401 GKTLGEVMFRANTVMLGYFKNPKATE-----EAFRNG--WYHTGDLAVRNPDGYVQMKDR 453
           G+ LG V F+   +  GY KN  ATE     + FR G  WY TGDL  ++ DG     DR
Sbjct: 300 GEMLGRVRFKNRELFQGYLKNEDATESKLLRDVFRKGDIWYRTGDLLRQDADGRWYFLDR 359

Query: 454 RKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPE- 512
             D     +E +S+ EV  VL + P V EA V G V     +       +     ++ E 
Sbjct: 360 LGDTFRWKSENVSTGEVADVLGAIPSVAEANVYG-VKVPGYDGRAGCAAITLEESSAVET 418

Query: 513 -----ELVTFCGDELPSCMVPRAI-FFEDIPVNSTGKVQKFVLRGK 552
                 L       LPS  VP  +   E++      K QK VLR +
Sbjct: 419 EFTKNLLAKLARKRLPSYAVPLFLRLTEEVATTGNHKQQKGVLRKE 464

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS)

 Score = 69.9 bits (172), Expect = 1e-12
 Identities = 47/207 (22%), Positives = 77/207 (37%), Gaps = 17/207 (8%)

Query: 45  RFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRL 104
             SW +      +LA+AL  L +  GD VA   PN+P       A    GA+ S+     
Sbjct: 86  EISWAELRSQVARLAAALRDLGVKPGDRVAGYLPNVPEAVIAMLATASIGAIWSS--CSP 143

Query: 105 DSATLASI--LRQLEAKIIFVD--YQFVEVVQNALDILSPNHKCDKAP---LLVTIPECD 157
           D    A +    Q+E K++F    Y +     +  + +         P    +V +P   
Sbjct: 144 DFGVEAVLDRFGQIEPKVLFAVDGYVYNGKEHDRREKI--AEIVKGLPSLEAVVVVPYLS 201

Query: 158 HYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVY 217
                  +         L           +FE +  +H   P+ + Y+SG+TG PK +V+
Sbjct: 202 SDAQP--AALKFSALTLLWSLAGDRAAPLEFERLPFDH---PLWILYSSGTTGLPKCIVH 256

Query: 218 SHRGAYLNSLAQIS-RCDVRDMPVFLW 243
              G  L  L +    CD+R      +
Sbjct: 257 GAGGTLLQHLKEHGLHCDLRPGDRLFY 283

AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score = 69.4 bits (170), Expect = 2e-12
 Identities = 50/195 (25%), Positives = 75/195 (38%), Gaps = 22/195 (11%)

Query: 26  LERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYK 85
           L R A +  DA ++ +     +WR+       LA AL++  +  GD V  +  N     +
Sbjct: 23  LARHALMQPDAPALRFLGNTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVE 82

Query: 86  LHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCD 145
              A  M GA+   +N RL    +A ++    A ++  +     V     DI        
Sbjct: 83  SVLAANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDI-------- 134

Query: 146 KAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQ-PNHECDPISVNY 204
             PLL T+               +     L Y DLL         +  PN    P  + Y
Sbjct: 135 -VPLLSTV----------VVAGGSSDDSVLGYEDLLAEAGPAHAPVDIPNDS--PALIMY 181

Query: 205 TSGSTGDPKGVVYSH 219
           TSG+TG PKG V +H
Sbjct: 182 TSGTTGRPKGAVLTH 196

Length = 542

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 69.6 bits (171), Expect = 3e-12
 Identities = 106/371 (28%), Positives = 148/371 (39%), Gaps = 67/371 (18%)

Query: 198  DPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQI-SRCDVRDMPVFLWTLDMFRCNGWCCT 256
            DP  + +TSGS G PKGVV SHR    N  AQ+ +R D          L +F   G    
Sbjct: 794  DPAVILFTSGSEGTPKGVVLSHRNLLANR-AQVAARIDFSPEDKVFNALPVFHSFGLTGG 852

Query: 257  WAMAAVGGINVCI-------RTVSAKIIFDS---ILIHKVTHLCGQPRILNMIANASASD 306
              +  + G+ V +       R +   +I+D+   IL    T L G  R       A   D
Sbjct: 853  LVLPLLSGVKVFLYPSPLHYRIIPE-LIYDTNATILFGTDTFLNGYARY------AHPYD 905

Query: 307  QNQLQRKVIIVIAGVLPTIEVLEQV--ANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSA 364
               L+     V AG     E   Q     FG  I   YG+TE   P I           A
Sbjct: 906  FRSLRY----VFAGAEKVKEETRQTWMEKFGIRILEGYGVTET-APVI-----------A 949

Query: 365  LD---HEHEMTKHREGLNNLLIQGVDVKQQNTMKSVP--HDGKTLGEVMFRANTVMLGYF 419
            L+   H    T  R      L+ G++ +    ++ VP   +G   G +  R   VMLGY 
Sbjct: 950  LNTPMHNKAGTVGR------LLPGIEYR----LEPVPGIDEG---GRLFVRGPNVMLGYL 996

Query: 420  K--NPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSN 477
            +  NP   E    +GWY TGD+   + +G++ +K R K       E+IS   VE  L + 
Sbjct: 997  RAENPGVLEPP-ADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAGEMISLAAVEE-LAAE 1054

Query: 478  --PKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFC-GDELPSCMVPRAIFFE 534
              P  L AAV   + D  K   +  + L    +A+    +           MVP  I   
Sbjct: 1055 LWPDALHAAV--SIPDARKGERI--ILLTTASDATRAAFLAHAKAAGASELMVPAEIITI 1110

Query: 535  D-IPVNSTGKV 544
            D IP+  TGK+
Sbjct: 1111 DEIPLLGTGKI 1121

Length = 1140

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 67.3 bits (164), Expect = 9e-12
 Identities = 48/163 (29%), Positives = 70/163 (42%), Gaps = 6/163 (3%)

Query: 403 TLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGA 462
           + G +  ++   MLGY+ NP+ T E   +GW +TGDL  R  DG+  +K R  ++II G 
Sbjct: 373 SFGTLWIKSPANMLGYWNNPERTAEVLIDGWVNTGDLLERREDGFFYIKGRSSEMIICGG 432

Query: 463 EIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKE-VPVAFVKLKEGREASPEELVTFCG-- 519
             I+  EV+ +      V EAA     D++    V +A V   E  E++   L       
Sbjct: 433 VNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVVASAELDESAARALKHTIAAR 492

Query: 520 --DELPSCMVPRAI-FFEDIPVNSTGKVQKFVLRGKVNATAVG 559
              E      P  I    DIP   +GKV +  L     A    
Sbjct: 493 FRRESEPMARPSTIVIVTDIPRTQSGKVMRASLAAAATADKAR 535

Length = 540

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 67.7 bits (165), Expect = 1e-11
 Identities = 100/377 (26%), Positives = 139/377 (36%), Gaps = 56/377 (14%)

Query: 202  VNYTSGSTGDPKGVVYSHRG--AYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAM 259
            V YTSGSTG PKGV  SH     +L++  +       D  +   +   F  +       +
Sbjct: 4699 VIYTSGSTGRPKGVAVSHGSLVNHLHATGERYELTPDDRVLQFMSFS-FDGSHEGLYHPL 4757

Query: 260  AAVGGINVCIRTVSA---KIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVII 316
                G +V IR  S    + ++  I  H+VT L   P  L  +A  +  D      +V  
Sbjct: 4758 IN--GASVVIRDDSLWDPERLYAEIHEHRVTVLVFPPVYLQQLAEHAERDGEPPSLRVYC 4815

Query: 317  VIAGVLPT---IEVLEQVANFG-FNIRHAYGMTEVLGPAIVRQWK-PEGESSALDHEHEM 371
                 +           +     FN    YG TE      V  WK  +G++    +    
Sbjct: 4816 FGGEAVAQASYDLAWRALKPVYLFNG---YGPTETT--VTVLLWKARDGDACGAAYMPIG 4870

Query: 372  TKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAF-- 429
            T     L N     +D +        P      GE+      V  GY + P  T E F  
Sbjct: 4871 TP----LGNRSGYVLDGQLN------PLPVGVAGELYLGGEGVARGYLERPALTAERFVP 4920

Query: 430  ----RNG--WYHTGDLAVRNPDGYVQMKDR-RKDIIISGAEIISSL-EVEAVLLSNPKVL 481
                  G   Y TGDLA    DG +    R    + I G  I   L E+EA L  +P V 
Sbjct: 4921 DPFGAPGGRLYRTGDLARYRADGVIDYLGRVDHQVKIRGFRI--ELGEIEARLREHPAVR 4978

Query: 482  EAAVV---GKVDDQLKEVPVAFV-----KLKEGREASPE---ELVTFCGDELPSCMVP-R 529
            EA V+   G V  QL    V +V      L +  EA  E   EL     + LP  MVP  
Sbjct: 4979 EAVVIAQEGAVGKQL----VGYVVPQDPALADADEAQAELRDELKAALRERLPEYMVPAH 5034

Query: 530  AIFFEDIPVNSTGKVQK 546
             +F   +P+   GK+ +
Sbjct: 5035 LVFLARMPLTPNGKLDR 5051

Length = 5163

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 66.1 bits (162), Expect = 2e-11
 Identities = 42/195 (21%), Positives = 72/195 (36%), Gaps = 44/195 (22%)

Query: 28  RAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLH 87
            A  +      + YG +     +       LA  L  L +  GD+VA +  N P  ++++
Sbjct: 1   PAVIMAPSGEVVTYGELEARSNR-------LAHGLRALGLREGDVVAILLENNPEFFEVY 53

Query: 88  FAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKA 147
           +A   +G   + +N  L +A +A I+    AK++ V     +        L P       
Sbjct: 54  WAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIVSAALADTAAELAAEL-PAG----V 108

Query: 148 PLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPIS------ 201
           PLL+ +                   G   Y + L   + D           PI+      
Sbjct: 109 PLLLVVAGP--------------VPGFRSYEEALA-AQPD----------TPIADETAGA 143

Query: 202 -VNYTSGSTGDPKGV 215
            + Y+SG+TG PKG+
Sbjct: 144 DMLYSSGTTGRPKGI 158

Length = 502

>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins

 Score = 66.7 bits (163), Expect = 2e-11
 Identities = 115/537 (21%), Positives = 184/537 (34%), Gaps = 98/537 (18%)

Query: 57  KLASAL-AQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQ 115
           ++A AL A   +  GD VA +  N PA   +   +   G   + LNT + S +L    R 
Sbjct: 15  QVARALLAHAGLKPGDTVALLLGNEPAFLWIWLGLAKLGCPTAFLNTNIRSGSLLHCFRC 74

Query: 116 LEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSL 175
             A+++  D + +E V+  L    P  +     +                     P G +
Sbjct: 75  CGARVLVADPELLEAVEEIL----PALRAMGVRVFYLSHTS-------------PPEGVI 117

Query: 176 DYNDLLEMGKADF---EMMQPNHECDPISVNYTSGSTGDPKGVVYSH-RGAYLNSLAQIS 231
                ++    +     +             YTSG+TG PK    SH R    + +  + 
Sbjct: 118 SLLAKVDAASDEPVPASLRSGVSIRSTALYIYTSGTTGLPKAARISHLRVLQCSGMLSLC 177

Query: 232 RCDVRDMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCI---------RTVSAKIIFDSIL 282
                D  V   TL ++         +  A+ GI  CI            SA   +D   
Sbjct: 178 GVTADD--VVYTTLPLYH--------SSGALLGIVGCIGLGATLVLKPKFSASQFWDDCR 227

Query: 283 IHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVANFG-FNIRHA 341
            + VT       +L  + N   SD N    KV + I   L      E +  FG  ++   
Sbjct: 228 KYNVTVFQYIGELLRYLCNQPQSD-NDRDHKVRLAIGNGLRPDVWREFLRRFGPIHVWET 286

Query: 342 YGMTE-----------------------VLGPAIVRQWKPEGESSALDHEHEMTKHREGL 378
           Y  TE                       +L P  + ++  E +    D +       +G 
Sbjct: 287 YASTEGNIGFINYTGRVGAVGRASCLYKLLSPFELIKYDVEKDEPVRDAQGFCIPVGKGE 346

Query: 379 NNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATE-----EAFRNG- 432
             LLI  +  +        P  G                Y    + TE     + F+ G 
Sbjct: 347 PGLLISKITSQS-------PFLG----------------YAGPRELTEKKLLRDVFKKGD 383

Query: 433 -WYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVG-KVD 490
            +++TGDL V++   ++   DR  D      E +++ EV  +L     + E  V G  V 
Sbjct: 384 VYFNTGDLLVQDRQNFLYFHDRTGDTFRWKGENVATTEVADILTMVDFIQEVNVYGVTVP 443

Query: 491 DQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQK 546
                  +A V LK G E   E+L     + LP+   PR +  +D + V  T K QK
Sbjct: 444 GHEGRAGMAAVILKPGTEFDLEKLYQHVREFLPAYARPRFLRIQDSMEVTGTFKQQK 500

Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535

>gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase

 Score = 66.4 bits (162), Expect = 2e-11
 Identities = 56/235 (23%), Positives = 96/235 (40%), Gaps = 25/235 (10%)

Query: 27  ERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKL 86
           E A  +Y D T         +W +  +    LA+AL  L +  GD V+   PNIP     
Sbjct: 100 EPAL-LYVDETHEPA---PVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVA 155

Query: 87  HFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFV--DYQFVEVVQNALDILSPNHKC 144
             A    GA+ S+ +    +  +    +Q+E K++F    Y++     +  D ++   K 
Sbjct: 156 MLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKE 215

Query: 145 --DKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLL---EMGKADFEMMQPNHECDP 199
                  +V IP    Y     + A     G+LD  D     +  +  FE +  +H   P
Sbjct: 216 LPTLRA-VVHIP----YLGPRETEAPKID-GALDLEDFTAAAQAAELVFEQLPFDH---P 266

Query: 200 ISVNYTSGSTGDPKGVVYSHRGAYLNSLAQIS-RCDVRDMPVFLWTLDMFRCNGW 253
           + + ++SG+TG PK +V+S  G  +  L +    CD+       +    +   GW
Sbjct: 267 LWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLFY----YTTTGW 317

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 66.3 bits (162), Expect = 3e-11
 Identities = 104/373 (27%), Positives = 142/373 (38%), Gaps = 51/373 (13%)

Query: 202  VNYTSGSTGDPKGVVYSHRGAYLNSL---AQISRCDVRDMPVFLWTLDMFRCNGWCCTWA 258
            V YTSGSTG PKGV   H GA  N L   A+    D  D  V L+    F        W 
Sbjct: 3242 VIYTSGSTGKPKGVGVRH-GALANHLCWIAEAYELDANDR-VLLFMSFSFDGAQERFLWT 3299

Query: 259  MAAVGGINVCIRTVSAKIIFDS------ILIHKVTHLCGQPRILNMIA-NASASDQNQLQ 311
            +   GG  V    V    ++D       I  H+++  C  P  L   A +A  +D   L 
Sbjct: 3300 LIC-GGCLV----VRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAGGADCASLD 3354

Query: 312  RKVIIVIAGVLPTIEVLEQV----ANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDH 367
                 V  G        EQV       G  + + YG TE +    V  WK  G++     
Sbjct: 3355 I---YVFGGEAVPPAAFEQVKRKLKPRG--LTNGYGPTEAV--VTVTLWKCGGDAVCEAP 3407

Query: 368  EHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEE 427
               + +    +    I  +D      +  VP      GE+      +  GY + P  T E
Sbjct: 3408 YAPIGR---PVAGRSIYVLD----GQLNPVPVG--VAGELYIGGVGLARGYHQRPSLTAE 3458

Query: 428  AF------RNG--WYHTGDLAVRNPDGYVQMKDR-RKDIIISGAEIISSL-EVEAVLLSN 477
             F       +G   Y TGDLA    DG ++   R    + I G  I   L E+EA LL +
Sbjct: 3459 RFVADPFSGSGGRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRI--ELGEIEARLLQH 3516

Query: 478  PKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAI-FFEDI 536
            P V EA V+   D    +  VA+V   + +    E L       LP  MVP  +     +
Sbjct: 3517 PSVREAVVLA-RDGAGGKQLVAYVVPADPQGDWRETLRDHLAASLPDYMVPAQLLVLAAM 3575

Query: 537  PVNSTGKVQKFVL 549
            P+   GKV +  L
Sbjct: 3576 PLGPNGKVDRKAL 3588

Length = 3956

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score = 66.0 bits (161), Expect = 3e-11
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 1/84 (1%)

Query: 405 GEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDII-ISGAE 463
           GE+  R NT+  GY K    TEE   +GW+HTGD+    P+G +++ DR+K+I  +S  E
Sbjct: 466 GEICLRGNTLFSGYHKRQDLTEEVLIDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGE 525

Query: 464 IISSLEVEAVLLSNPKVLEAAVVG 487
            ++   +E      P +    V G
Sbjct: 526 YVAVENLENTYSRCPLIASIWVYG 549

Length = 660

>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional

 Score = 64.8 bits (159), Expect = 6e-11
 Identities = 61/231 (26%), Positives = 96/231 (41%), Gaps = 39/231 (16%)

Query: 34  GDATSIIY-----GTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHF 88
            D  +II+          SW +  +    LA+AL  L +  GD VAA  PNIP       
Sbjct: 98  DDRPAIIFRGEDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAML 157

Query: 89  AVPMAGAVLSALNTRLDSATLASILRQLEAKIIF-VD-YQF----------VEVVQNALD 136
           A    GA+ S+ +       +     Q+E K++  VD Y++          V  ++ AL 
Sbjct: 158 ATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALP 217

Query: 137 ILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKA---DFEMMQP 193
            L           +V +P          + A     G+L + D L   +A   +FE +  
Sbjct: 218 SLEH---------VVVVPYLGP------AAAAAALPGALLWEDFLAPAEAAELEFEPVPF 262

Query: 194 NHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQIS-RCDVRDMPVFLW 243
           +H   P+ + Y+SG+TG PK +V+ H G  L  L ++   CD+     F W
Sbjct: 263 DH---PLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDLGPGDRFFW 310

Length = 655

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 64.6 bits (157), Expect = 1e-10
 Identities = 102/372 (27%), Positives = 142/372 (38%), Gaps = 55/372 (14%)

Query: 202  VNYTSGSTGDPKGVVYSHRG--AYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAM 259
            V YTSGSTG PKG    HR     L  + Q     V D  V   T   F  + W   W +
Sbjct: 660  VIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYGLGVGDT-VLQKTPFSFDVSVWEFFWPL 718

Query: 260  AAVGGINVC---IRTVSAKIIFDSILIHKVTHLCGQPRILN-MIANASASDQNQLQRKVI 315
             +   + V         AK++ + I    V  L   P +L   + +   +    L+R   
Sbjct: 719  MSGARLVVAAPGDHRDPAKLV-ELINREGVDTLHFVPSMLQAFLQDEDVASCTSLRR--- 774

Query: 316  IVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHR 375
            IV +G     +  EQV    F      G+  + GP            +A+D  H  T   
Sbjct: 775  IVCSGEALPADAQEQV----FAKLPQAGLYNLYGPT----------EAAIDVTHW-TCVE 819

Query: 376  EG---------LNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATE 426
            EG         + NL    +D      ++ VP     LGE+      +  GY   P  T 
Sbjct: 820  EGGDSVPIGRPIANLACYILDAN----LEPVPV--GVLGELYLAGRGLARGYHGRPGLTA 873

Query: 427  EAF-----RNG--WYHTGDLAVRNPDGYVQMKDRRKD-IIISGAEIISSLEVEAVLLSNP 478
            E F       G   Y TGDLA    DG ++   R    + + G  I    E+EA LL +P
Sbjct: 874  ERFVPSPFVAGERMYRTGDLARYRADGVIEYAGRIDHQVKLRGLRIELG-EIEARLLEHP 932

Query: 479  KVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVP-RAIFFEDIP 537
             V EAAV+     QL    V +V L+       E L       LP  MVP + +  E +P
Sbjct: 933  WVREAAVLAVDGKQL----VGYVVLESEGGDWREALKAHLAASLPEYMVPAQWLALERLP 988

Query: 538  VNSTGKVQKFVL 549
            +   GK+ +  L
Sbjct: 989  LTPNGKLDRKAL 1000

Length = 5163

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score = 63.6 bits (155), Expect = 1e-10
 Identities = 32/82 (39%), Positives = 52/82 (63%), Gaps = 6/82 (7%)

Query: 405 GEVMFRANTVMLGYFKNPKATEEAFR---NG--WYHTGDLAVRNPDGYVQMKDRRKDII- 458
           GE++    +V LGYFKN + T+E ++    G  W++TGD+   +PDG +++ DR+KDI+ 
Sbjct: 503 GEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVK 562

Query: 459 ISGAEIISSLEVEAVLLSNPKV 480
           +   E +S  +VEA L  +P V
Sbjct: 563 LQHGEYVSLGKVEAALSVSPYV 584

Length = 696

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 62.8 bits (153), Expect = 2e-10
 Identities = 50/196 (25%), Positives = 79/196 (40%), Gaps = 23/196 (11%)

Query: 25  FLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALY 84
           FL +AA  + D  ++++G   ++WR+       LA+ALA   + +GD +   + N   ++
Sbjct: 12  FLRQAARRFPDRIALVWGDRSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMF 71

Query: 85  KLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKC 144
           +  FA    GAV    N R     +A +     A+ +     F            P H  
Sbjct: 72  ESMFAAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADF------------PEH-- 117

Query: 145 DKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLL-EMGKADFEMMQPNHECDPISVN 203
             A +    P+  H       VA       LDY  L+     A       +H+ DP    
Sbjct: 118 -AAAVRAASPDLTH------VVAIGGARAGLDYEALVARHLGARVANAAVDHD-DPCWFF 169

Query: 204 YTSGSTGDPKGVVYSH 219
           +TSG+TG PK  V +H
Sbjct: 170 FTSGTTGRPKAAVLTH 185

Length = 528

>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase

 Score = 63.0 bits (153), Expect = 2e-10
 Identities = 41/124 (33%), Positives = 67/124 (54%), Gaps = 6/124 (4%)

Query: 432 GWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDD 491
           G+Y +GD   R+ DGY  +  R  D+I      I + EVE+ L+S+P+  EAAVVG ++ 
Sbjct: 513 GYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVG-IEH 571

Query: 492 QLKEVPV-AFVKLKEGREASPE---ELVTFCGDELPSCMVPRAIFFE-DIPVNSTGKVQK 546
           ++K   + AFV L EG   S E    L+    +++ +   P  I +   +P   +GK+ +
Sbjct: 572 EVKGQGIYAFVTLVEGVPYSEELRKSLILTVRNQIGAFAAPDKIHWAPGLPKTRSGKIMR 631

Query: 547 FVLR 550
            +LR
Sbjct: 632 RILR 635

Length = 666

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score = 62.4 bits (152), Expect = 3e-10
 Identities = 115/497 (23%), Positives = 183/497 (36%), Gaps = 125/497 (25%)

Query: 137 ILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGS----LDYNDLLEMGKADFEMMQ 192
           +LS   +     L+V +   D   PS        PSG+    + Y+ LL  G++  +  +
Sbjct: 164 LLSCLSEIPSVRLIVVVGGADEPLPSL-------PSGTGVEIVTYSKLLAQGRSSPQPFR 216

Query: 193 PNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMF---- 248
           P    D  ++ YTSG+TG PK       G  L     I+      +    +  D+     
Sbjct: 217 PPKPEDVATICYTSGTTGTPK-------GVVLTHGNLIANVAGSSLSTKFYPSDVHISYL 269

Query: 249 -------RCNGWCCTWAMAAVG---GINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNM 298
                  R N         AVG   G N+       K++ D +   + T  C  PR+ N 
Sbjct: 270 PLAHIYERVNQIVMLHYGVAVGFYQGDNL-------KLM-DDLAALRPTIFCSVPRLYNR 321

Query: 299 I-------------------ANASASDQNQLQR----------------------KVIIV 317
           I                     A  + +  L+                       +V  +
Sbjct: 322 IYDGITNAVKESGGLKERLFNAAYNAKKQALENGKNPSPMWDRLVFNKIKAKLGGRVRFM 381

Query: 318 IAGVLP-TIEVLEQV-ANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHR 375
            +G  P + +V+E +   FG  +   YGMTE                S +D    ++ H 
Sbjct: 382 SSGASPLSPDVMEFLRICFGGRVLEGYGMTETSCVI-----------SGMDEGDNLSGHV 430

Query: 376 EGLN-NLLIQGVDVKQQN-TMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRN-G 432
              N    ++ VDV + N T +  P+     GE+  R   +  GY+K+   T E     G
Sbjct: 431 GSPNPACEVKLVDVPEMNYTSEDQPY---PRGEICVRGPIIFKGYYKDEVQTREVIDEDG 487

Query: 433 WYHTGDLAVRNPDGYVQMKDRRKDII-ISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDD 491
           W HTGD+ +  P G +++ DR+K+I  ++  E I+  ++E V      V +  V G   D
Sbjct: 488 WLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYG---D 544

Query: 492 QLKEVPVAFVKL----------KEGREASPEELVTFCGDELPSCMVPRAIFFEDIPVNST 541
            L    VA V +           EG +   E+L   C D        RA    D+  ++ 
Sbjct: 545 SLNSSLVAVVVVDPEVLKAWAASEGIKY--EDLKQLCNDP-----RVRAAVLADM--DAV 595

Query: 542 GKVQKFVLRGKVNATAV 558
           G+  +  LRG   A AV
Sbjct: 596 GREAQ--LRGFEFAKAV 610

Length = 651

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 62.9 bits (153), Expect = 4e-10
 Identities = 105/388 (27%), Positives = 155/388 (39%), Gaps = 83/388 (21%)

Query: 202  VNYTSGSTGDPKGVVYSH-----RGAYLNSLAQISRCDV--RDMPVFLWTLDMFRCNGWC 254
            V YTSGSTG PKGV  +H     R  ++ +   +   DV  +  P+       F  + W 
Sbjct: 1278 VIYTSGSTGQPKGVGNTHAALAERLQWMQATYALDDSDVLMQKAPI------SFDVSVWE 1331

Query: 255  CTWAMAAVGGINVCIRTVSAKI--------IFDSILIHKVTHLCGQPRILNM-IANASAS 305
            C W +     I  C R V A          I + +  + VT L   P +L + I    A+
Sbjct: 1332 CFWPL-----ITGC-RLVLAGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPLAA 1385

Query: 306  DQNQLQRKVIIVIAG--VLPT------IEVLEQVANFGFNIRHAYGMTEVLGPAI-VRQW 356
                L+R    + +G   LP       ++ L QV      + + YG TE    AI V  W
Sbjct: 1386 ACTSLRR----LFSGGEALPAELRNRVLQRLPQVQ-----LHNRYGPTET---AINVTHW 1433

Query: 357  ---KPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANT 413
                 +GE S +            L N+L + +D +       V       GE+      
Sbjct: 1434 QCQAEDGERSPIGRP---------LGNVLCRVLDAELNLLPPGVA------GELCIGGAG 1478

Query: 414  VMLGYFKNPKATEEAF------RNG--WYHTGDLAVRNPDGYVQMKDRRKDIIISGAEII 465
            +  GY   P  T E F       +G   Y TGD A  N DG ++   R    +      +
Sbjct: 1479 LARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARWNADGALEYLGRLDQQVKLRGFRV 1538

Query: 466  SSLEVEAVLLSNPKVLEAAVV---GKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDEL 522
               E++A LL+ P V +AAV+   G    QL    V +   + G+EA  E L      EL
Sbjct: 1539 EPEEIQARLLAQPGVAQAAVLVREGAAGAQL----VGYYTGEAGQEAEAERLKAALAAEL 1594

Query: 523  PSCMVP-RAIFFEDIPVNSTGKVQKFVL 549
            P  MVP + I  + +P+  +GK+ +  L
Sbjct: 1595 PEYMVPAQLIRLDQMPLGPSGKLDRRAL 1622

Length = 4334

>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed

 Score = 61.5 bits (150), Expect = 4e-10
 Identities = 59/242 (24%), Positives = 94/242 (38%), Gaps = 41/242 (16%)

Query: 310 LQRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEH 369
           L +   I++ G      +LEQ       +   YGMTE    + +   KP+          
Sbjct: 229 LAQFRTILLGGAPAWPSLLEQARQLQLRLAPTYGMTET--ASQIATLKPD---------- 276

Query: 370 EMTKHREGLNNLLIQGVDVKQQNTMKSVPH------DGKTLGEVMFRANTVMLGYFKNPK 423
                 + L             ++ + +PH        +T G +  +A ++ LGY+    
Sbjct: 277 ------DFLA---------GNNSSGQVLPHAQITIPANQT-GNITIQAQSLALGYYPQIL 320

Query: 424 ATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEA 483
            ++  F      T DL   +  GY+ +  R    II+G E +   EVEA +L+   V + 
Sbjct: 321 DSQGIFE-----TDDLGYLDAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDV 375

Query: 484 AVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRA-IFFEDIPVNSTG 542
            V+G  D    EV  A    K+    S EEL T   D+L     P+  I    +P N  G
Sbjct: 376 CVLGLPDPHWGEVVTAIYVPKDP-SISLEELKTAIKDQLSPFKQPKHWIPVPQLPRNPQG 434

Query: 543 KV 544
           K+
Sbjct: 435 KI 436

Length = 452

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score = 61.2 bits (149), Expect = 7e-10
 Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 6/93 (6%)

Query: 405 GEVMFRANTVMLGYFKNPKATEEAF-RNGWYHTGDLAVRNPDGYVQMKDRRKDIII-SGA 462
           GE+      V +GY    + TEEA   +GW H+GDL   + DG++ +  R K++II +G 
Sbjct: 391 GEICIWGRHVFMGYLNMEEKTEEAIDEDGWLHSGDLGFLDDDGFLYITGRIKELIITAGG 450

Query: 463 EIISSLEVE-AVLLSNPKVLEAAVVGKVDDQLK 494
           E +  + +E AV    P +  A +VG   D+ K
Sbjct: 451 ENVPPVPIEEAVKKELPIISNAMLVG---DKRK 480

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 60.4 bits (147), Expect = 7e-10
 Identities = 47/154 (30%), Positives = 68/154 (44%), Gaps = 9/154 (5%)

Query: 397 VPHDGKTL----GEVMFRANTVMLGYFKNPKATEEAFRN-GWYHTGDLAVRNPDGYVQMK 451
           VP DG  +    G +     T+  GY +NP    + F   GW+ T DL   + DG + + 
Sbjct: 196 VPLDGVRVRVEDGRIALGGPTLAKGY-RNP-VDPDPFAEPGWFRTDDLGALD-DGVLTVL 252

Query: 452 DRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASP 511
            R  D I +G   +    VEA L ++P V + AV G  DD+L +  VA V    G   + 
Sbjct: 253 GRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGGPAPTL 312

Query: 512 EELVTFCGDELPSCMVPRAIF-FEDIPVNSTGKV 544
           E L       L     PR +   +++P    GKV
Sbjct: 313 EALRAHVARTLDRTAAPRELHVVDELPRRGIGKV 346

Length = 358

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 59.5 bits (145), Expect = 2e-09
 Identities = 41/189 (21%), Positives = 71/189 (37%), Gaps = 38/189 (20%)

Query: 34  GDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMA 93
            DAT++I G    ++ +  +    +A+AL    ++ GD+VA + P           + +A
Sbjct: 1   PDATAVIDGAGTLTYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAVLGILLA 60

Query: 94  GAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTI 153
           GA    ++    +   A+IL +  A+ +  D    +  +              AP L+ +
Sbjct: 61  GAAYVPIDPDQPAERRAAILARAGARAVLTDPGLAQPEE--------------APDLLVV 106

Query: 154 PECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPK 213
            +      S            L Y                        V +TSGSTG+PK
Sbjct: 107 ADDAAAAESPAPPPPRVDPDDLAY------------------------VIFTSGSTGEPK 142

Query: 214 GVVYSHRGA 222
           GV+ +HR A
Sbjct: 143 GVMITHRAA 151

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 60.6 bits (147), Expect = 2e-09
 Identities = 104/383 (27%), Positives = 144/383 (37%), Gaps = 67/383 (17%)

Query: 202  VNYTSGSTGDPKGVVYSHRGAYLNSLA------QISRCDVRDMPVFLWTLDMFRCNGWCC 255
            V YTSGSTG PKG    H GA +N L       Q+S  DV    V  +T   F  + W  
Sbjct: 1723 VIYTSGSTGRPKGAGNRH-GALVNRLCATQEAYQLSAADV----VLQFTSFAFDVSVWEL 1777

Query: 256  TWAMAAVGGINVCIRTVSA----KIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQ 311
             W +  + G  + I    A    + +   I   +VT L   P +L  +       ++ L 
Sbjct: 1778 FWPL--INGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDEQVEHPLS 1835

Query: 312  RKVIIVIAGVLPTI---EVLEQVANFG-FNIRHAYGMTEVLGPAI-VRQWK-----PEGE 361
             + ++     L        LE++ + G FN+   YG TE    A+ V  W       EG 
Sbjct: 1836 LRRVVCGGEALEVEALRPWLERLPDTGLFNL---YGPTET---AVDVTHWTCRRKDLEGR 1889

Query: 362  SSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKN 421
             S            + + NL    +D     ++  VP      GE+      +  GY   
Sbjct: 1890 DSV--------PIGQPIANLSTYILD----ASLNPVPI--GVAGELYLGGVGLARGYLNR 1935

Query: 422  PKATEEAF------RNG--WYHTGDLAVRNPDGYVQMKDR-RKDIIISGAEIISSL-EVE 471
            P  T E F        G   Y TGDLA    DG ++   R    + I G  I   L E+E
Sbjct: 1936 PALTAERFVADPFGTVGSRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRI--ELGEIE 1993

Query: 472  AVLLSNPKVLEAAVV---GKVDDQLKE--VPV--AFVKLKEGREASPEELVTFCGDELPS 524
            A L     V EA V+   G    QL    VP     V   E + A    L       LP 
Sbjct: 1994 ARLREQGGVREAVVIAQDGANGKQLVAYVVPTDPGLVDDDEAQVALRAILKNHLKASLPE 2053

Query: 525  CMVP-RAIFFEDIPVNSTGKVQK 546
             MVP   +F   +P+   GK+ +
Sbjct: 2054 YMVPAHLVFLARMPLTPNGKLDR 2076

Length = 3956

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 59.1 bits (144), Expect = 3e-09
 Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 3/118 (2%)

Query: 405 GEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEI 464
           GE+  R  ++ LGY++  +        GW+ T D      +G + +  R  ++  SG E 
Sbjct: 305 GEIWLRGASLALGYWRQGQLVPLVNDEGWFATRDRGEWQ-NGELTILGRLDNLFFSGGEG 363

Query: 465 ISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDEL 522
           I   E+E V+  +P V +  VV   D +  + PVA V+     EA+   L  +  D+L
Sbjct: 364 IQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDS--EAAVVNLAEWLQDKL 419

Length = 458

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 59.0 bits (143), Expect = 4e-09
 Identities = 46/162 (28%), Positives = 71/162 (43%), Gaps = 15/162 (9%)

Query: 405 GEVMFRANTVMLGYFKNPKATEEAF---RNGW-YHTGDLAVRNPDGYVQMKDRRK-DIII 459
           GE++    +V  GY  NP+ T EAF        Y TGD      DG +  + R    I +
Sbjct: 343 GEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTIT-DGQLFYQGRLDFQIKL 401

Query: 460 SGAEIISSLE-VEAVLLSNPKVLEAAVVGKVDDQLK-EVPVAFVKLKEGREASPEELVTF 517
            G  I   LE +E  L  +  +  A VV K +   K E  +A +  +        +L   
Sbjct: 402 HGYRI--ELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETEDFEKEFQLTKA 459

Query: 518 CGDEL----PSCMVPRA-IFFEDIPVNSTGKVQKFVLRGKVN 554
              EL    P+ M+PR  I+ + +P+ + GK+ +  L  +VN
Sbjct: 460 IKKELKKSLPAYMIPRKFIYRDQLPLTANGKIDRKALAEEVN 501

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 58.8 bits (143), Expect = 4e-09
 Identities = 55/172 (31%), Positives = 78/172 (45%), Gaps = 34/172 (19%)

Query: 405 GEVMFRANTVMLGYFKNPKATEEAF--RNGW--YHTGDLAVRNPDGYVQMKDRRKD--II 458
           GE++    +V  GY  NP+ T EAF   +G   YHTGD      DG +  +  R D  I 
Sbjct: 345 GEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYLE-DGLLFYQG-RIDFQIK 402

Query: 459 ISGAEIISSLE-VEAVLLSNPKVLEAAVV-----GKVDDQLKEVPVAFVKLKEG---RE- 508
           ++G  I   LE +E  L  +  V  A VV      KV   L    +A+V  KE    RE 
Sbjct: 403 LNGYRI--ELEEIEQNLRQSSYVESAVVVPYNKDHKV-QYL----IAYVVPKEEDFEREF 455

Query: 509 ----ASPEELVTFCGDELPSCMVPRA-IFFEDIPVNSTGKVQKFVLRGKVNA 555
               A  +EL     + L   M+PR  I+ + +P+   GK+ +  L  +VN 
Sbjct: 456 ELTKAIKKEL----KERLMEYMIPRKFIYRDSLPLTPNGKIDRKALIEEVNK 503

Length = 503

>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated

 Score = 58.5 bits (141), Expect = 6e-09
 Identities = 109/535 (20%), Positives = 176/535 (32%), Gaps = 93/535 (17%)

Query: 50  QTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATL 109
           Q H    +L   L    +S GD V    P+ P L +L  A    G +    N  L     
Sbjct: 35  QIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARGVMAFLANPELHRD-- 92

Query: 110 ASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANN 169
                         D+                   + A ++ +    D +QPS  + A  
Sbjct: 93  --------------DHAL------------AARNTEPALVVTSDALRDRFQPSRVAEAAE 126

Query: 170 FPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQ 229
                   ++   +    +E M  +         YTSG+TG PK  ++ H       +  
Sbjct: 127 L------MSEAARVAPGGYEPMGGDALA---YATYTSGTTGPPKAAIHRHADPL-TFVDA 176

Query: 230 ISRCDVRDMP--VFLWTLDMFRCNGWC-CTWAMAAVGGINVCIRT-VSAKIIFDSILIHK 285
           + R  +R  P    L +  M+   G     W   A GG  V     V+ +          
Sbjct: 177 MCRKALRLTPEDTGLCSARMYFAYGLGNSVWFPLATGGSAVINSAPVTPEAAAILSARFG 236

Query: 286 VTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVANF--GFNIRHAYG 343
            + L G P     + ++ + D  +  R V  V AG    + + E++  F  G  I    G
Sbjct: 237 PSVLYGVPNFFARVIDSCSPDSFRSLRCV--VSAGEALELGLAERLMEFFGGIPILDGIG 294

Query: 344 MTEVLGPAI---VRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHD 400
            TEV    +   V +W+       L                            ++ V  D
Sbjct: 295 STEVGQTFVSNRVDEWRLGTLGRVL------------------------PPYEIRVVAPD 330

Query: 401 GKTLG-----EVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRK 455
           G T G     ++  R   +  GY+  P +       GW  T D    + DG+V  + R  
Sbjct: 331 GTTAGPGVEGDLWVRGPAIAKGYWNRPDSPVA--NEGWLDTRDRVCIDSDGWVTYRCRAD 388

Query: 456 DIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFV--KLKEGREAS--- 510
           D  + G   +   EVE +++ +  V EAAVV   +        AF+        + S   
Sbjct: 389 DTEVIGGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVATSGATIDGSVMR 448

Query: 511 --PEELVTFCGDELPSCMVP-RAIFFEDIPVNSTGKVQKFVLRGKVNATAVGWSL 562
                L+      L +  VP R    + +P    GK+ +  LR +     + W L
Sbjct: 449 DLHRGLLN----RLSAFKVPHRFAVVDRLPRTPNGKLVRGALRKQSPTKPI-WEL 498

Length = 705

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 58.1 bits (141), Expect = 7e-09
 Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 10/112 (8%)

Query: 18  VPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMA 77
           +PLT  D L R  H   DA ++I G  +FS+R+ +Q    LA +L +  I  GD      
Sbjct: 25  LPLT--DILTR--HAASDAIAVICGERQFSYRELNQASDNLACSLRRQGIKPGDTALVQL 80

Query: 78  PNIPALYKLHFAVPMAG-AVLSAL--NTRLDSATLASILRQLEAKIIFVDYQ 126
            N+   Y   FA+   G A ++AL  + R +   L +   Q+E  ++  D Q
Sbjct: 81  GNVAEFYITFFALLKLGVAPVNALFSHQRSE---LNAYASQIEPALLIADRQ 129

Length = 536

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 57.9 bits (141), Expect = 8e-09
 Identities = 41/187 (21%), Positives = 65/187 (34%), Gaps = 37/187 (19%)

Query: 35  DATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAG 94
           DA +++YG    ++ + ++   +LA  L    +  GD+VA +    P L     A+  AG
Sbjct: 2   DAIALVYGDRSLTYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKAG 61

Query: 95  AVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIP 154
           A    L+    +  LA +L    A+++        +   +L          +A  L  + 
Sbjct: 62  AAYVPLDPAYPAERLAFMLEDSGARVL--------LTDESL------APLARADQLPLVI 107

Query: 155 ECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKG 214
             +                                        D   V YTSGSTG PKG
Sbjct: 108 LEEELDAEDAGPPAPAVDAD-----------------------DLAYVMYTSGSTGRPKG 144

Query: 215 VVYSHRG 221
           V   HRG
Sbjct: 145 VAVPHRG 151

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional

 Score = 57.7 bits (140), Expect = 9e-09
 Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 2/81 (2%)

Query: 434 YHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQL 493
           Y T D  +R+ DGY  +  R  D+I      + + E+E  + S+P V E AVVG V D L
Sbjct: 475 YSTFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVG-VKDAL 533

Query: 494 K-EVPVAFVKLKEGREASPEE 513
           K +V VAFV  K+    +  E
Sbjct: 534 KGQVAVAFVVPKDSDSLADRE 554

Length = 629

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score = 56.8 bits (138), Expect = 1e-08
 Identities = 23/80 (28%), Positives = 37/80 (46%)

Query: 45  RFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRL 104
             +W +  +   +LA+ L  L +  GD VA +A N P       A+  AGAV   +    
Sbjct: 5   TITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPIYPTS 64

Query: 105 DSATLASILRQLEAKIIFVD 124
               +A IL    A+++FV+
Sbjct: 65  SPEEVAYILNDSGARVVFVE 84

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase

 Score = 57.2 bits (138), Expect = 1e-08
 Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 15/142 (10%)

Query: 428 AFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVG 487
            F+   Y + D  +R+ DGY  +  R  D+I      + + E+E  + S+P V E AVVG
Sbjct: 468 HFKRPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVG 527

Query: 488 KVDDQLK-EVPVAFVKLKE--------GREASPEELVTFCGDELPSCMVPRAIFF-EDIP 537
            V D+LK +V V F  LKE           A    ++     +L +   P  ++F   +P
Sbjct: 528 -VHDELKGQVAVVFAILKESDSAGDAHDPHAVETGMMDCVVRQLGAVARPARVYFVAALP 586

Query: 538 VNSTGKVQKFVLRGKVNATAVG 559
              +GK    +LR  + A A G
Sbjct: 587 KTRSGK----LLRRSIQALAEG 604

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 56.5 bits (137), Expect = 2e-08
 Identities = 23/80 (28%), Positives = 38/80 (47%)

Query: 45  RFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRL 104
           R S+ + +    + A AL  L + +GD+VA +  N P       A+   GAV + +NT  
Sbjct: 3   RLSYAEFNAWANRYAHALRALGVKKGDVVALLMENRPEYLLAWLALAKLGAVAALINTTQ 62

Query: 105 DSATLASILRQLEAKIIFVD 124
               LA  +   +A+ + VD
Sbjct: 63  RGEVLAHCINVSDARAVIVD 82

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase

 Score = 57.0 bits (137), Expect = 2e-08
 Identities = 52/215 (24%), Positives = 90/215 (41%), Gaps = 37/215 (17%)

Query: 275 KIIFDSILIHKV-------THLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEV 327
           K +FDS   +K        +H+   P    ++ N     +  L   V I+++G  P    
Sbjct: 345 KFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKV---KQGLGGNVRIILSGAAPLASH 401

Query: 328 LEQVANF--GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQG 385
           +E         ++   YG+TE             G   +L  E +M     G     +  
Sbjct: 402 VESFLRVVACCHVLQGYGLTESCA----------GTFVSLPDELDML----GTVGPPVPN 447

Query: 386 VDVKQQNTMKSVPH------DGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDL 439
           VD++    ++SVP            GE+  R  T+  GY+K    T+E   +GW HTGD+
Sbjct: 448 VDIR----LESVPEMEYDALASTPRGEICIRGKTLFSGYYKREDLTKEVLIDGWLHTGDV 503

Query: 440 AVRNPDGYVQMKDRRKDII-ISGAEIISSLEVEAV 473
               P+G +++ DR+K+I  +S  E ++   +E +
Sbjct: 504 GEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENI 538

Length = 666

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 56.2 bits (136), Expect = 3e-08
 Identities = 53/210 (25%), Positives = 85/210 (40%), Gaps = 17/210 (8%)

Query: 18  VPLTPIDFLERAAHVYGDATSII-YGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAM 76
            PLT  ++L   A       +II YG V  ++ +  ++  + A+ L Q  +  GD VA  
Sbjct: 33  RPLT--EYLRAWARERPQRPAIIFYGHV-ITYAELDELSDRFAALLRQRGVGAGDRVAVF 89

Query: 77  APNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALD 136
            PN P  + + F +   GAV   ++       L+  L    A+++    Q   VV+    
Sbjct: 90  LPNCPQFHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRA 149

Query: 137 ILSPNH-----KCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMM 191
             S  H       D  P   T+P      P +        +G++D    L    A   + 
Sbjct: 150 ETSLRHVIVTSLADVLPAEPTLPL-----PDSLRAPRLAAAGAIDLLPALRACTA--PVP 202

Query: 192 QPNHECD-PISVNYTSGSTGDPKGVVYSHR 220
            P    D   ++NYT G+TG PKG  ++ R
Sbjct: 203 LPPPALDALAALNYTGGTTGMPKGCEHTQR 232

Length = 567

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score = 54.1 bits (131), Expect = 9e-08
 Identities = 25/79 (31%), Positives = 41/79 (51%)

Query: 45  RFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRL 104
           R ++ +      +LA+ALA+L +  GD+VA   PN      ++ A    GAV++ +    
Sbjct: 1   RLTYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIY 60

Query: 105 DSATLASILRQLEAKIIFV 123
               L  ILRQ  A+++FV
Sbjct: 61  RERELGFILRQARARVLFV 79

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 54.1 bits (131), Expect = 1e-07
 Identities = 28/80 (35%), Positives = 41/80 (51%)

Query: 45  RFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRL 104
           R+++ +  +   +LA+ L  L +  GD VA M  N P   +  FA+   GAV   +NT L
Sbjct: 3   RYTYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTAL 62

Query: 105 DSATLASILRQLEAKIIFVD 124
               LA IL    A++I VD
Sbjct: 63  RGEELAHILDHSGARLIVVD 82

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 54.2 bits (131), Expect = 1e-07
 Identities = 50/204 (24%), Positives = 74/204 (36%), Gaps = 57/204 (27%)

Query: 44  VRFSWRQTHQICLKLASALAQLKISRGDIVA-------AMAPNIPALYKLHFAVPMAGAV 96
           VR +W + H+   ++A  LA   +  GD VA        +AP    L+       M GA 
Sbjct: 28  VRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLW-------MRGAS 80

Query: 97  LSALNT---RLDSATLA----SILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPL 149
           L+ L+    R D A  A     ++  + AK + V                        P 
Sbjct: 81  LTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVG----------------------EPF 118

Query: 150 LVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGST 209
           L   P  +       +VA+   +  +D    +E G+ D  +MQ            TSGST
Sbjct: 119 LAAAPVLEEKGIRVLTVADLLAADPID---PVETGEDDLALMQ-----------LTSGST 164

Query: 210 GDPKGVVYSHRGAYLNSLAQISRC 233
           G PK V  +H   Y N+ A     
Sbjct: 165 GSPKAVQITHGNLYANAEAMFVAA 188

Length = 545

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score = 53.7 bits (130), Expect = 2e-07
 Identities = 44/163 (26%), Positives = 66/163 (40%), Gaps = 20/163 (12%)

Query: 57  KLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQL 116
           K A+ L +L + +GD V    P IP LY         GA++  L        +   L   
Sbjct: 85  KFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDS 144

Query: 117 EAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLD 176
           EAK++        +   AL         D  P L  +                   G+LD
Sbjct: 145 EAKVL--------ITTPAL---LERKPADDLPSLKHVLLVGEDVEE--------GPGTLD 185

Query: 177 YNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSH 219
           +N L+E    +F++ +     D   ++YTSGSTG PKGV++ H
Sbjct: 186 FNALMEQASDEFDI-EWTDREDGAILHYTSGSTGKPKGVLHVH 227

Length = 570

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 53.7 bits (130), Expect = 2e-07
 Identities = 47/195 (24%), Positives = 73/195 (37%), Gaps = 44/195 (22%)

Query: 47  SWRQTHQICLKLASALAQLKISRGDIVAAMAPN----IPALYKLHFAVPMAGAV----LS 98
           ++ +  +    +A+ L  L  + GD V  +AP     + A     F    AGA+      
Sbjct: 25  TYAELDRRARAIAARLQAL-GAPGDRVLLLAPPGLDFVAAF----FGCLYAGAIAVPAPP 79

Query: 99  ALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDH 158
                   A LA+IL    A+ +      +  ++ AL           A LL+ +   D 
Sbjct: 80  PRRLGRHLARLAAILADAGARAVLTTSAVLAALRAALA--------APAALLLLLIAAD- 130

Query: 159 YQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYS 218
                               DL  +  AD+    P+ + D   + YTSGSTG PKGV+ +
Sbjct: 131 --------------------DLAALAAADWRPPPPDPD-DIAFLQYTSGSTGAPKGVMVT 169

Query: 219 HRGAYLNSLAQISRC 233
           H     N L  I+R 
Sbjct: 170 HGNLLAN-LRAIARA 183

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional

 Score = 54.0 bits (130), Expect = 2e-07
 Identities = 46/178 (25%), Positives = 80/178 (44%), Gaps = 28/178 (15%)

Query: 400 DGKTL-----GEVMFR-------ANTVMLGYFKNPKATEEAFRN--GWYHTGDLAVRNPD 445
           DGK L     GEV F+       A T    ++KN +  ++ F    G+Y++GDL  ++ +
Sbjct: 450 DGKELNVNEIGEVAFKLPMPPSFATT----FYKNDEKFKQLFSKFPGYYNSGDLGFKDEN 505

Query: 446 GYVQMKDRRKD-IIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLK 504
           GY  +  R  D I ISG ++  +  +E  +L +P VLE   +G  D     VP+  + LK
Sbjct: 506 GYYTIVSRSDDQIKISGNKVQLN-TIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLK 564

Query: 505 EGREASPEELVTF--------CGDELPSCMVPRAIFFEDIPVNSTGKVQKFVLRGKVN 554
           + +     +L             D     ++ + I    +P   TGK+ + ++   +N
Sbjct: 565 QDQSNQSIDLNKLKNEINNIITQDIESLAVLRKIIIVNQLPKTKTGKIPRQIISKFLN 622

Length = 647

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 53.0 bits (128), Expect = 3e-07
 Identities = 34/114 (29%), Positives = 45/114 (39%), Gaps = 21/114 (18%)

Query: 403 TLGEVMFRANTVMLGYFKNPKATEEAFR-------NGWYHTGDLAVRNPDGYVQMKDRRK 455
            +GE+  R  +V  GY+  P+AT E F         GW  TGDL   + DG + +  R K
Sbjct: 381 EVGEIWVRGPSVAAGYWNRPEATAETFGARLATDEGGWLRTGDLGFLH-DGELYVTGRLK 439

Query: 456 D-IIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGRE 508
           D III G                P+ +EA V             AF    +G E
Sbjct: 440 DLIIIRGRNHY------------PQDIEATVERAHPALRPGAAAAFSVDGDGEE 481

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated

 Score = 52.7 bits (127), Expect = 3e-07
 Identities = 35/113 (30%), Positives = 48/113 (42%), Gaps = 7/113 (6%)

Query: 435 HTGDLAVRNPDGYVQMKDRRKDII-ISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQL 493
            T DL  ++  G +    R  D+I +SG  +   +EVE V+L  P V EA V    D   
Sbjct: 294 FTKDLGYKSERGTLHFMGRMDDVINVSGLNVYP-IEVEDVMLRLPGVQEAVVYRGKDPVA 352

Query: 494 KE-VPVAFVKLKEGREASPEELVTFCGDELPSCMVP-RAIFFEDIPVNSTGKV 544
            E V    +      E  P +L  +C   L    VP       +IP N+ GKV
Sbjct: 353 GERVKAKVIS---HEEIDPVQLREWCIQHLAPYQVPHEIESVTEIPKNANGKV 402

Length = 414

>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional

 Score = 53.1 bits (128), Expect = 3e-07
 Identities = 51/220 (23%), Positives = 76/220 (34%), Gaps = 47/220 (21%)

Query: 13  ASANNVPLTP-IDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGD 71
           A+A  +P T     + + A    DA ++     +FS+R+  +  + LA+ L +  +  GD
Sbjct: 450 ATAVEIPETTLSALVAQQAAKTPDAPALADARYQFSYREMREQVVALANLLRERGVKPGD 509

Query: 72  IVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVV 131
            VA   P    L     A+  AGA    L+T      L  +L                  
Sbjct: 510 SVAVALPRSVFLTLALHAIVEAGAAWLPLDTGYPDDRLKMMLE----------------- 552

Query: 132 QNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSG----SLDYNDLLEMGKAD 187
                        D  P L+          +T      F       SL YN  L      
Sbjct: 553 -------------DARPSLLI---------TTADQLPRFADVPDLTSLCYNAPL--APQG 588

Query: 188 FEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSL 227
              +Q +       + +TSGSTG PKGV+     A +N L
Sbjct: 589 AAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQT-AIVNRL 627

Length = 1296

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 52.7 bits (127), Expect = 4e-07
 Identities = 55/206 (26%), Positives = 85/206 (41%), Gaps = 43/206 (20%)

Query: 33  YGDATSIIY-----GTVR-FSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIP-ALYK 85
            GD  ++IY     GT R +++ + +    +LA  L +L + +GD V    P IP A+  
Sbjct: 55  RGDQIALIYDSPVTGTKRTYTYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPEAVIA 114

Query: 86  LHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEV--VQNALDILSPNHK 143
           +  A    GA+ S +     S  LAS +   + K+I      +E   V     +L     
Sbjct: 115 M-LACARIGAIHSVVFGGFASKELASRIDDAKPKLIVTASFGIEPGRVVPYKPLL----- 168

Query: 144 CDKAPLLVTIPECDHYQPSTCSV-------ANNFPSGSLDYNDLLEMGKADFEMMQPNHE 196
            DKA     +    H +P    +       A   P   LD+ +L+              +
Sbjct: 169 -DKA-----LELSQH-KPHKVLILNRGQVPAPLKPGRDLDWAELMAK--------ARPVD 213

Query: 197 C------DPISVNYTSGSTGDPKGVV 216
           C      DP+ + YTSG+TG PKGVV
Sbjct: 214 CVPVESTDPLYILYTSGTTGKPKGVV 239

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score = 52.6 bits (127), Expect = 4e-07
 Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 392 NTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAF-RNGWYHTGDLAVR 442
             +K VP  GK   EV  +   V  GY++ P+ T EAF   G+Y +GD AVR
Sbjct: 401 CEVKLVPVGGKL--EVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGD-AVR 449

Length = 614

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 51.8 bits (125), Expect = 7e-07
 Identities = 64/256 (25%), Positives = 101/256 (39%), Gaps = 72/256 (28%)

Query: 33  YGDATSIIY----GTV--RFSWRQTH-QICLKLASALAQLKISRGDIVAAMAPNIPALYK 85
            G+  +II+    G      ++R+ + ++C + A+ L  L + +GD VA   P IP L  
Sbjct: 60  RGNKVAIIWEGEPGDESRTITYRELYREVC-RFANVLKSLGVKKGDRVAIYMPMIPEL-- 116

Query: 86  LHFAVPM-----AGAVLS---------ALNTRLDSATLASILRQLEAK-IIFVDYQF--- 127
               + M      GA+ S         AL  R++ A         ++K +I  D  +   
Sbjct: 117 ---PIAMLACARIGAIHSVVFAGFSAEALADRINDA---------KSKLLITADGGYRGG 164

Query: 128 -----VEVVQNALDILSPNHKCDKAPLLV---TIPECDHYQPSTCSVANNFPSGSLDYND 179
                 E+V  AL+      K      +V   T  E                   + ++D
Sbjct: 165 KVIPLKEIVDEALEKCPSVEKV-----IVVKRTGGEVPMV-----------EGRDVWWHD 208

Query: 180 LLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRC--DVRD 237
           L+       E    + E DP+ + YTSGSTG PKGVV++  G YL   A   +   D+  
Sbjct: 209 LMAKASPYCEPEPMDAE-DPLFILYTSGSTGKPKGVVHTT-GGYLVYAATTFKYVFDIHP 266

Query: 238 MPVFLWTLDMFRCNGW 253
             V+  T D+    GW
Sbjct: 267 DDVYWCTADI----GW 278

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 51.5 bits (124), Expect = 8e-07
 Identities = 51/224 (22%), Positives = 74/224 (33%), Gaps = 49/224 (21%)

Query: 11  CSASANNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRG 70
             A   +   T    L  A   Y D  +++ G  R ++ Q      +   A   L +  G
Sbjct: 3   TMADLLHSGATYGHLLVSALKRYPDRPALVLGDTRLTYGQLADRISRYIQAFEALGLGTG 62

Query: 71  DIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLAS------ILRQLEAKIIFVD 124
           D VA ++ N P +         A  +     T L    L S      +L       + VD
Sbjct: 63  DAVALLSLNRPEV----LMAIGAAQLAGLRRTALHP--LGSLDDHAYVLEDAGISTLIVD 116

Query: 125 -YQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDY-NDLLE 182
              FVE    AL +L       + P                S+ +    G +    DLL 
Sbjct: 117 PAPFVE---RALALL------ARVP----------------SLKHVLTLGPVPDGVDLL- 150

Query: 183 MGKADFEMMQPNH------ECDPISVNYTSGSTGDPKGVVYSHR 220
              A      P          D   + YT G+TG PKGV+ +HR
Sbjct: 151 ---AAAAKFGPAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTHR 191

Length = 524

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score = 51.1 bits (123), Expect = 1e-06
 Identities = 25/88 (28%), Positives = 40/88 (45%)

Query: 35  DATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAG 94
           D  +++ G    ++ +      +LA AL  L +  GD VA +AP       L+ A+  AG
Sbjct: 1   DRIALVDGGRSLTYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRAG 60

Query: 95  AVLSALNTRLDSATLASILRQLEAKIIF 122
            V   LN    +A LA IL   +  ++ 
Sbjct: 61  GVAVPLNPSYPAAELAYILSDSQPSLLV 88

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 27/88 (30%), Positives = 40/88 (45%)

Query: 37  TSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAV 96
           T+   G    ++R+ H +  + A+ L  L +S GD V  + P+ P L     A   AGAV
Sbjct: 2   TAFYCGEQSLTYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAV 61

Query: 97  LSALNTRLDSATLASILRQLEAKIIFVD 124
             ALN  L    L  IL    A ++  +
Sbjct: 62  AVALNPLLTPQDLEHILDDSGAALLVTE 89

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS)

 Score = 51.5 bits (124), Expect = 1e-06
 Identities = 42/148 (28%), Positives = 58/148 (39%), Gaps = 31/148 (20%)

Query: 418 YFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDR------RKDIIISGAEIISSLEVE 471
           YF       + F   W H GD     P G V +  R         + I  AEI   +E  
Sbjct: 465 YF-------DTFPGVWRH-GDWIKITPHGGVIIYGRSDATLNPGGVRIGTAEIYRVVE-- 514

Query: 472 AVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCM----V 527
                 P+V ++ VVG+  D   E    FVKL+EG     + LV      + + +    V
Sbjct: 515 ----KIPEVEDSLVVGQEVDDGDERMPLFVKLREGVTLD-DALVKRIRSAIRAALSPRHV 569

Query: 528 PRAIF-FEDIPVNSTGK-----VQKFVL 549
           P  I    DIP   +GK     V+K +L
Sbjct: 570 PAEIIAVPDIPYTLSGKKVEVAVKKILL 597

AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score = 50.4 bits (121), Expect = 2e-06
 Identities = 44/159 (27%), Positives = 58/159 (36%), Gaps = 41/159 (25%)

Query: 342 YGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDG 401
           YG TE         W  E               R GL  L + GV       +K  P   
Sbjct: 384 YGATETAPTTTGTHWDTE---------------RVGLIGLPLPGV------ELKLAPVGD 422

Query: 402 KTLGEVMFRANTVMLGYFKNPKATEEAF-RNGWYHTGDLAVRNPDGYVQMKDRRKDIIIS 460
           K   EV  +   V  GY K+P+ T  AF   G+Y  GD A      +V   D  K +I  
Sbjct: 423 KY--EVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAAR-----FVDPDDPEKGLIFD 475

Query: 461 G--AE----------IISSLEVEAVLLSNPKVLEAAVVG 487
           G  AE           + +L  +AV   +P + +A V G
Sbjct: 476 GRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAG 514

Length = 624

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 50.0 bits (120), Expect = 3e-06
 Identities = 57/255 (22%), Positives = 92/255 (36%), Gaps = 42/255 (16%)

Query: 26  LERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDI-----VAAMAPNI 80
            +RA     D  ++ YG   ++WR+     L  A+A A   I+  D      V  +  N 
Sbjct: 10  RDRAGD---DTIAVRYGDRTWTWREV----LAEAAARAAALIALADPDRPLHVGVLLGNT 62

Query: 81  PALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSP 140
           P +     A  + G VL  LNT    A LA+ +R+ + +++  D +   ++   LD+   
Sbjct: 63  PEMLFWLAAAALGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLD-GLDL--- 118

Query: 141 NHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPI 200
                   +L                       +  Y +L+          +     DP 
Sbjct: 119 ----PGVRVLDV--------------------DTPAYAELVA-AAGALTPHREVDAMDPF 153

Query: 201 SVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAMA 260
            + +TSG+TG PK V  SH        A   R  +    V   ++ +F  N     WA A
Sbjct: 154 MLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAPA 213

Query: 261 AVGGINVCIR-TVSA 274
              G  V +    SA
Sbjct: 214 VASGAAVALPAKFSA 228

Length = 540

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 49.2 bits (118), Expect = 3e-06
 Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 11/86 (12%)

Query: 405 GEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIIS--GA 462
           GE++ R +  MLGY   P AT++     W+ TGDL   + +GY+ +  R+K++II+  G 
Sbjct: 305 GEILVRGSL-MLGYLGEPPATDD-----WWATGDLGHLDEEGYLYINGRKKNLIITSFGR 358

Query: 463 EIISSLE-VEAVLLSNPKVLEAAVVG 487
            +  S E VE+ L   P + +A V G
Sbjct: 359 NV--SPEWVESELQQAPAIAQAVVFG 382

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score = 49.1 bits (118), Expect = 4e-06
 Identities = 25/74 (33%), Positives = 35/74 (47%)

Query: 45  RFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRL 104
             ++++  Q   +LA  LA L + RGD VA +A N      L  A+   GAV+  LN RL
Sbjct: 1   SLTFQELDQRVSQLAEQLAALGVRRGDRVALLAKNSIEFLLLFLALLRLGAVVLPLNPRL 60

Query: 105 DSATLASILRQLEA 118
               L   L  L+ 
Sbjct: 61  PQEELQQQLADLQP 74

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score = 49.2 bits (118), Expect = 5e-06
 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 6/57 (10%)

Query: 392 NTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAF-RNGWYHTGDLAVR--NPD 445
             +K VP+ GK   EV  +   V  GY+++P+ T EAF   G+Y  GD AVR  +PD
Sbjct: 356 TELKLVPNGGKL--EVRVKGPNVTPGYWRDPELTAEAFDEEGFYRIGD-AVRFVDPD 409

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score = 49.0 bits (117), Expect = 5e-06
 Identities = 66/278 (23%), Positives = 107/278 (38%), Gaps = 20/278 (7%)

Query: 204 YTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAMAAVG 263
           +TSG+   PKGV  +H     N  A +     ++  V +  L  F   G+        + 
Sbjct: 190 FTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPPFHAYGFNSCTLFPLLS 249

Query: 264 GINVCI--RTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGV 321
           G+ V      +  K I + I   KVT L   P   + I   +   ++ L     +VI G 
Sbjct: 250 GVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQESCLPSLRFVVIGGD 309

Query: 322 LPTIEVLEQVANFGFNI--RHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLN 379
                + ++      +I  R  YG TE   P I            ++      KH   + 
Sbjct: 310 AFKDSLYQEALKTFPHIQLRQGYGTTEC-SPVI-----------TINTV-NSPKHESCVG 356

Query: 380 NLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNG--WYHTG 437
            + I+G+DV   +    VP      G V+ R  ++  GY             G  WY TG
Sbjct: 357 -MPIRGMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTG 415

Query: 438 DLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLL 475
           DL   +  G + +K R    +  GAE++S   +E++L+
Sbjct: 416 DLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESILM 453

Length = 539

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 47.9 bits (115), Expect = 9e-06
 Identities = 37/197 (18%), Positives = 62/197 (31%), Gaps = 46/197 (23%)

Query: 30  AHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFA 89
           A V   A ++       +W+Q      +LA+  AQ  +  G  VA    N P     + A
Sbjct: 13  AQVRPQAIALRLNDEVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLA 72

Query: 90  VPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPL 149
           +   GA +  LN +L    L  +L  L                     L    +   + L
Sbjct: 73  LLQCGARVLPLNPQLPQPLLEELLPSLTLDFA----------------LVLEGENTFSAL 116

Query: 150 LVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGST 209
                +      +                         ++  +        ++  TSGST
Sbjct: 117 TSLHLQLVEGAHA-----------------------VAWQPQRL------ATMTLTSGST 147

Query: 210 GDPKGVVYSHRGAYLNS 226
           G PK  V++ + A+L S
Sbjct: 148 GLPKAAVHTAQ-AHLAS 163

Length = 458

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score = 47.9 bits (114), Expect = 1e-05
 Identities = 42/177 (23%), Positives = 69/177 (38%), Gaps = 9/177 (5%)

Query: 44  VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTR 103
           V  ++++ +   +++ SA+    ++ GD       N P       A    G     L   
Sbjct: 76  VWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDT 135

Query: 104 LDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPST 163
           L +  +  I+   E  I FV    +        ILS   KC  +  L TI          
Sbjct: 136 LGANAVEFIINHAEVSIAFVQESKIS------SILSCLPKC--SSNLKTIVSFGDVSSEQ 187

Query: 164 CSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHR 220
              A         + +   MG  D E+  P  + D  ++ YTSG+TG+PKGV+ ++R
Sbjct: 188 KEEAEELGVSCFSWEEFSLMGSLDCEL-PPKQKTDICTIMYTSGTTGEPKGVILTNR 243

Length = 660

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 46/161 (28%), Positives = 67/161 (41%), Gaps = 21/161 (13%)

Query: 405  GEVMFRANTVMLGYFKNPKATEEAF--------RNGWYHTGDLAVRNPDG---YVQMKDR 453
            GE+      V  GY  +P  T  AF            Y TGDLA R  DG   YV   D 
Sbjct: 4067 GELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGVLEYVGRIDH 4126

Query: 454  RKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEE 513
            +  + I G  I    E+EA L    +V EAA V   +    +  V ++   +    +   
Sbjct: 4127 Q--VKIRGYRIELG-EIEARLHEQAEVREAA-VAVQEGVNGKHLVGYLVPHQT-VLAQGA 4181

Query: 514  LVTFCGD----ELPSCMVP-RAIFFEDIPVNSTGKVQKFVL 549
            L+         ELP  MVP   ++ + +P+N+ GK+ +  L
Sbjct: 4182 LLERIKQRLRAELPDYMVPLHWLWLDRLPLNANGKLDRKAL 4222

Length = 4334

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 21/77 (27%), Positives = 38/77 (49%)

Query: 47  SWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDS 106
           ++ +  ++  +LA  L +  + +GD VA    N P     ++A+  AGAV+  +N     
Sbjct: 3   TYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMNRE 62

Query: 107 ATLASILRQLEAKIIFV 123
           A L  IL    A+++ V
Sbjct: 63  AELEHILNDSGARVLIV 79

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 51/182 (28%), Positives = 77/182 (42%), Gaps = 21/182 (11%)

Query: 39  IIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLS 98
           II G  R S+ +  Q   + A  LA L +  GD VA +  N  A ++  +A    GA   
Sbjct: 5   IISGDRRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAV 64

Query: 99  ALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLV--TIPEC 156
            +N       +A IL    A+++      +  + +AL    P        +L   T PE 
Sbjct: 65  PVNWHFKPEEIAYILEDSGARVLIAHADLLHGLASAL----PAG----VTVLSVPTPPEI 116

Query: 157 -DHYQ--PSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPK 213
              Y+  P+  +     P+G++D+   L    A  E         P S+ YTSG+TG PK
Sbjct: 117 AAAYRISPALLTP----PAGAIDWEGWL----AQQEPYDGPPVPQPQSMIYTSGTTGHPK 168

Query: 214 GV 215
           GV
Sbjct: 169 GV 170

Length = 509

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 9/119 (7%)

Query: 397 VPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKD 456
           +P   + +G +  R  ++M GYF++ ++ +    +GW  TGDL     DGY+ +  R KD
Sbjct: 406 LPE--RVVGHICVRGPSLMSGYFRDEESQDVLAADGWLDTGDLGYLL-DGYLYITGRAKD 462

Query: 457 IIISGAEIISSLEVEAVLLSNPKVL--EAAVVGKVDDQLKEVPVAFVKLKEGREASPEE 513
           +II     I   ++E +    P++   +AA    +  +  E  V  V   + R +  E 
Sbjct: 463 LIIINGRNIWPQDIEWIAEQEPELRSGDAAAFS-IAQENGEKIVLLV---QCRISDEER 517

Length = 579

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 46.4 bits (111), Expect = 3e-05
 Identities = 54/202 (26%), Positives = 76/202 (37%), Gaps = 25/202 (12%)

Query: 28  RAAHVYGDATSI-IYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKL 86
           RAA    DA  I     +R+++        +LA+ L  L +  GD VA      P    L
Sbjct: 10  RAAFADRDAPFIETPDGLRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALAL 69

Query: 87  HFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDK 146
           + A   AGAV   LNT    A L   +   E  ++  D             LS       
Sbjct: 70  YLATLRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCD-------PANFAWLSKIAAAAG 122

Query: 147 APLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTS 206
           AP + T+              +   +GSL   +       DFE + P    D  ++ YTS
Sbjct: 123 APHVETL--------------DADGTGSL--LEAAAAAPDDFETV-PRGADDLAAILYTS 165

Query: 207 GSTGDPKGVVYSHRGAYLNSLA 228
           G+TG  KG + SH     N+L 
Sbjct: 166 GTTGRSKGAMLSHGNLLSNALT 187

Length = 504

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score = 46.5 bits (111), Expect = 3e-05
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 405 GEVMFRANTVMLGYFKNPKATEEAFRN-GWYHTGDLAVRNPDGYVQMKDRRK 455
           GE++ R   +  GY+K  + T E     GW+HTGD+     +G +++  R K
Sbjct: 508 GEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVK 559

Length = 700

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score = 46.0 bits (109), Expect = 5e-05
 Identities = 41/173 (23%), Positives = 68/173 (39%), Gaps = 8/173 (4%)

Query: 47  SWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDS 106
           ++++ ++  L++ SAL       G  V     N P       A      +   L   L  
Sbjct: 78  TYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGP 137

Query: 107 ATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSV 166
             +  I+   E   +FV  + ++      ++L P+  C  A  L  I             
Sbjct: 138 GAVDYIVDHAEIDFVFVQDKKIK------ELLEPD--CKSAKRLKAIVSFTSVTEEESDK 189

Query: 167 ANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSH 219
           A+     +  + D L MGK +     P    D  ++ YTSG++GDPKGVV +H
Sbjct: 190 ASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTH 242

Length = 660

>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional

 Score = 45.8 bits (109), Expect = 6e-05
 Identities = 36/142 (25%), Positives = 55/142 (38%), Gaps = 16/142 (11%)

Query: 417 GYFKNPKATEE-----AFRNG--WYHTGDLAVRNPDGYVQMKDRRKDII-ISGAEIISSL 468
           GY   P  T        F  G   Y TGD+A    DG V+   R  D + I G  I    
Sbjct: 815 GYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDDGAVEYLGRSDDQLKIRGQRIELG- 873

Query: 469 EVEAVLLSNPKVLEAAVVGKVDDQLKEVP------VAFVKLKEGREASPEELVTFCGDEL 522
           E++  + + P V +A     V +Q           V ++  + G       L     + L
Sbjct: 874 EIDRAMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSGLPLDTSALQAQLRERL 933

Query: 523 PSCMVPRAIF-FEDIPVNSTGK 543
           P  MVP  +   + +P+++ GK
Sbjct: 934 PPHMVPVVLLQLDQLPLSANGK 955

Length = 1296

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 45.1 bits (107), Expect = 7e-05
 Identities = 19/77 (24%), Positives = 31/77 (40%)

Query: 45  RFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRL 104
             ++R+  +   ++A  L    I +GD V  M P    L  L FA+   GAV   ++  +
Sbjct: 2   SLTFRELDERSDRIARGLRASGIRKGDRVVLMVPPGADLTALTFALFKVGAVPVLIDPGM 61

Query: 105 DSATLASILRQLEAKII 121
               L   L + E    
Sbjct: 62  GRKHLGRCLEEAEPDAF 78

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score = 45.5 bits (108), Expect = 7e-05
 Identities = 41/181 (22%), Positives = 70/181 (38%), Gaps = 26/181 (14%)

Query: 47  SWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDS 106
           +++Q ++ C + A A  +L + R   V  +  N P  +        AG +   + T    
Sbjct: 10  TYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGGIAVGIYTTNSP 69

Query: 107 ATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSV 166
                +    EA I+ VD       +    IL+   +      ++   E    +      
Sbjct: 70  EACQYVAETSEANILVVDNA-----KQLQKILAIQDQLPHLKAIIQYRE--PLKEKE--- 119

Query: 167 ANNFPSGSLDYNDLLEMGKAD--------FEMMQPNHECDPISVNYTSGSTGDPKGVVYS 218
             N  S    + + +E+G++          E  +PN  C  I   YTSG+TG PKGV+ S
Sbjct: 120 -PNLYS----WKEFMELGRSIPDEQLDAIIESQKPNQCCTLI---YTSGTTGMPKGVMLS 171

Query: 219 H 219
           H
Sbjct: 172 H 172

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

 Score = 44.8 bits (106), Expect = 9e-05
 Identities = 41/166 (24%), Positives = 64/166 (38%), Gaps = 16/166 (9%)

Query: 328 LEQVANFGFNIRHA---YGMTEVLGPAIVRQWKPE-GESSALD---HEHEMTKHREGLNN 380
              +A FGF+   A   YG+ E      V    P  G    +D    +      R  +  
Sbjct: 293 ATAMAPFGFDAGAAAPSYGLAESTCAVTV----PVPGIGLRVDEVTTDDGSGARRHAVLG 348

Query: 381 LLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLA 440
             I G++V+      +    G+ +GE+  R  ++M GY            + W+ TGDL 
Sbjct: 349 NPIPGMEVRISPGDGAAGVAGREIGEIEIRGASMMSGYLGQAPID----PDDWFPTGDLG 404

Query: 441 VRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVV 486
                G V     ++ I ++G  I  + E+E V      V E AVV
Sbjct: 405 YLVDGGLVVCGRAKELITVAGRNIFPT-EIERVAAQVRGVREGAVV 449

Length = 525

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 15/23 (65%), Positives = 19/23 (82%)

Query: 198 DPISVNYTSGSTGDPKGVVYSHR 220
           D  ++ YTSGSTG+PKGV+ SHR
Sbjct: 3   DLAAIIYTSGSTGEPKGVMLSHR 25

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 46/218 (21%), Positives = 88/218 (40%), Gaps = 29/218 (13%)

Query: 6   LGGRLCSASANNVPLTPIDFLERAAHVYGDATSIIY--GTVRFSWRQTHQICLKLASALA 63
           +GG+   A    +P T +D +   A    +A ++    GT    +R+       LA+ L 
Sbjct: 1   MGGKKFQA-MPQLPSTVLDRVFEQARQQPEAIALRRCDGTSALRYRELVAEVGGLAADLR 59

Query: 64  QLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFV 123
              +SRG  V  ++ N P  Y    A    GA+    +  L  A +              
Sbjct: 60  AQSVSRGSRVLVISDNGPETYLSVLACAKLGAIAVMADGNLPIAAIE------------- 106

Query: 124 DYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEM 183
             +F ++   A  +++P  K   + +    PE  H  P    +A +  + + +    L+ 
Sbjct: 107 --RFCQITDPAAALVAPGSKMASSAV----PEALHSIPV---IAVDIAAVTRESEHSLDA 157

Query: 184 GKADFEMMQPNHECD-PISVNYTSGSTGDPKGVVYSHR 220
                     +   + P+++ +TSG+TG+PK V+ ++R
Sbjct: 158 ---ASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANR 192

Length = 540

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 42.9 bits (102), Expect = 3e-04
 Identities = 20/35 (57%), Positives = 23/35 (65%), Gaps = 1/35 (2%)

Query: 198 DPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISR 232
           D   V YTSGSTG PKGV  SHR A +N L  ++R
Sbjct: 94  DLAYVIYTSGSTGKPKGVEVSHR-ALVNFLLSMAR 127

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase

 Score = 43.4 bits (102), Expect = 3e-04
 Identities = 51/216 (23%), Positives = 76/216 (35%), Gaps = 49/216 (22%)

Query: 26  LERAAHVYGDATSIIY------GTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPN 79
           L+R     G+  +++            ++RQ H+     ASAL  L + RGD V    P 
Sbjct: 58  LDRHLDERGEQLALVTVSSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPM 117

Query: 80  IPALYKLHFAVPMAGAVLS---------ALNTRLDSATLASILR----QLEAKII----F 122
           I        A    GA+ S         +L  R+D AT   I+         K+I     
Sbjct: 118 IAEAVFAMLACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPL 177

Query: 123 VDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLL- 181
           +D    E       +L  +       L+                    P   +DY  L  
Sbjct: 178 LDAAIAEAQHPPPHVLLVDRGLAPMRLI--------------------PGRDVDYAALRT 217

Query: 182 --EMGKADFEMMQPNHECDPISVNYTSGSTGDPKGV 215
             E  +   E ++ N   +P  + YTSG+TG PKGV
Sbjct: 218 QHEDAQVPVEWLESN---EPSYILYTSGTTGKPKGV 250

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 42.6 bits (101), Expect = 4e-04
 Identities = 24/94 (25%), Positives = 38/94 (40%)

Query: 30  AHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFA 89
           A  + DA ++ +     ++ +  +   KLA  L  L +  GDIVA      P LY    A
Sbjct: 2   AQTHPDAVAVDFWDGSLTYAELDRRANKLAHHLISLGVRPGDIVALCLERSPWLYVAILA 61

Query: 90  VPMAGAVLSALNTRLDSATLASILRQLEAKIIFV 123
           V  AGA    ++       L  I+    A ++  
Sbjct: 62  VLKAGAAYVPIDPSAPVERLQFIIEDSGATVVLT 95

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 39/184 (21%), Positives = 55/184 (29%), Gaps = 40/184 (21%)

Query: 56  LKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLS--ALNTRLDS-----AT 108
              A  L  L +  GD VA +A       +  FA   AG V     L           A 
Sbjct: 60  EAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQ 119

Query: 109 LASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVAN 168
           L  +L   +   I    + +  V  A       H                          
Sbjct: 120 LRGMLASAQPAAIITPDELLPWVNEATHGNPLLH-------------------------- 153

Query: 169 NFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLA 228
                S  +   L           P+   D   + Y+SGST  P+GV+ +HR A + +L 
Sbjct: 154 ---VLSHAWFKALPEADVALPRPTPD---DIAYLQYSSGSTRFPRGVIITHR-ALMANLR 206

Query: 229 QISR 232
            IS 
Sbjct: 207 AISH 210

Length = 579

>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional

 Score = 43.2 bits (102), Expect = 4e-04
 Identities = 39/150 (26%), Positives = 63/150 (42%), Gaps = 35/150 (23%)

Query: 337 NIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQG-------VDVK 389
           N    YG+TE  GP  V                   +H +  N   I G         V+
Sbjct: 488 NYYQGYGLTETTGPIFV-------------------QHADDNNTESIGGPISPNTKYKVR 528

Query: 390 QQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRN-GWYHTGDLAVRNPDGYV 448
              T K+   D    GE++ +++++  GYF   + T+ AF   G++ TGD+   N +G +
Sbjct: 529 TWETYKA--TDTLPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINKNGSL 586

Query: 449 QMKDRRKDII-ISGAEIISSLEVEAVLLSN 477
              DR K ++ +S  E I     E  +L+N
Sbjct: 587 TFLDRSKGLVKLSQGEYI-----ETDMLNN 611

Length = 746

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 42.6 bits (101), Expect = 5e-04
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 42  GTVR-FSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSAL 100
           G+VR +++ +  +   +LAS LA L + +GD V    P IP       A+   GA+   +
Sbjct: 3   GSVRTWTYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAVPI 62

Query: 101 NTRLDSATLASILRQLEAKIIF 122
            +      +A+ L+  EAK++ 
Sbjct: 63  FSGFGPDAVATRLQDAEAKVLI 84

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional

 Score = 42.8 bits (101), Expect = 5e-04
 Identities = 58/235 (24%), Positives = 80/235 (34%), Gaps = 52/235 (22%)

Query: 21  TPIDFLERAAHVYGDATSIIY---------GTVRFSWRQTHQICLKLASALAQLKISRGD 71
           T I  +ER     GD  +  Y           V  +W Q   + L+   A  Q     GD
Sbjct: 35  TLISLIERNIANVGDTVAYRYLDHSHSAAGCAVELTWTQL-GVRLRAVGARLQQVAGPGD 93

Query: 72  IVAAMAPN--------IPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFV 123
            VA +AP           A+     AVP+    L     RLD+A     LR  E  ++  
Sbjct: 94  RVAILAPQGIDYVAGFFAAIKAGTIAVPLFAPELPGHAERLDTA-----LRDAEPTVVLT 148

Query: 124 DYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEM 183
                E V+  L  L    +    P ++ I       P   S   +F    LD +D+  +
Sbjct: 149 TTAAAEAVEGFLRNLPRLRR----PRVIAIDAI----PD--SAGESFVPVELDTDDVSHL 198

Query: 184 GKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDM 238
                               YTSGST  P GV  +HR    N +  I   D+ D 
Sbjct: 199 -------------------QYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDR 234

Length = 612

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 42.3 bits (100), Expect = 6e-04
 Identities = 23/81 (28%), Positives = 35/81 (43%)

Query: 45  RFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRL 104
            +++ Q      +LA+AL +L + RGD V    P  P     H AV   GAV   L+   
Sbjct: 6   EYTFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPLSVLF 65

Query: 105 DSATLASILRQLEAKIIFVDY 125
               +   LR   A+++  D 
Sbjct: 66  GPDAVEHRLRDSGARVLVTDG 86

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score = 42.2 bits (100), Expect = 6e-04
 Identities = 41/186 (22%), Positives = 67/186 (36%), Gaps = 33/186 (17%)

Query: 45  RFSWRQTHQICLKLASALAQLKISRGDIVAAMAPN-----IPALYKLHFAVPMAGAVLSA 99
           R ++ +  +    +A AL  L +S    +  ++ N     + AL  ++  VP+A  V  A
Sbjct: 25  RVTYAEALRQVRAIAQALLDLGLSAERPLMILSGNSIEHALLALAAMYAGVPVA-PVSPA 83

Query: 100 --LNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECD 157
             L ++ D A L  I   L    +F +         AL  L           +V      
Sbjct: 84  YSLLSK-DFAKLRHIFDLLTPGAVFAED--GAAFARALAAL-----GLAGVPVVA----- 130

Query: 158 HYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVN---YTSGSTGDPKG 214
                   V       ++ +  LL        +        P +V    +TSGSTG PK 
Sbjct: 131 --------VRGAPGGPAIAFAALLATPPTA-AVDAAFAAVGPDTVAKYLFTSGSTGLPKA 181

Query: 215 VVYSHR 220
           V+ +HR
Sbjct: 182 VINTHR 187

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 41.9 bits (99), Expect = 7e-04
 Identities = 16/25 (64%), Positives = 16/25 (64%)

Query: 198 DPISVNYTSGSTGDPKGVVYSHRGA 222
           D   V YTSGSTG PKGV   HR A
Sbjct: 106 DLAYVIYTSGSTGRPKGVAIEHRNA 130

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional

 Score = 42.0 bits (100), Expect = 8e-04
 Identities = 63/223 (28%), Positives = 93/223 (41%), Gaps = 64/223 (28%)

Query: 34  GDATSIIY-----GTVR-FSWRQTH-QICLKLASALAQLKISRGDIVAAMAPNIPALYKL 86
           GD  +II+     G  R  ++R+ H ++C + A+AL  L + +GD VA   P IP     
Sbjct: 81  GDKVAIIWEGDDPGDSRKITYRELHREVC-RFANALKSLGVKKGDRVAIYMPMIPEA--- 136

Query: 87  HFAVPM-A----GAVLS---------ALNTRLDSATLASILRQLEAK-IIFVDYQF---- 127
             AV M A    GAV S         AL  R+  A          AK +I  D       
Sbjct: 137 --AVAMLACARIGAVHSVVFGGFSAEALADRIIDA---------GAKLVITADEGVRGGK 185

Query: 128 -VEVVQNALDILSPNHKCDKAPLLVTIPECDH---YQPSTCSVANNFPSGSLDYNDLLEM 183
            + +  N           D+A  L   P  +     + +   V        L +++L+  
Sbjct: 186 PIPLKANV----------DEA--LANCPSVEKVIVVRRTGGDVDWV-EGRDLWWHELVAG 232

Query: 184 GKADF--EMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYL 224
              +   E M  + E DP+ + YTSGSTG PKGV+++  G YL
Sbjct: 233 ASDECEPEPM--DAE-DPLFILYTSGSTGKPKGVLHT-TGGYL 271

Length = 637

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 42.0 bits (99), Expect = 8e-04
 Identities = 46/184 (25%), Positives = 68/184 (36%), Gaps = 44/184 (23%)

Query: 396 SVP--HDGKTLGEVMFRANTVMLGYFK-------------NPKATEEAFRNGWYHTGDLA 440
           SVP    G   G +  +   +M GY +             N +   E    GWY TGD+ 
Sbjct: 546 SVPGIEQG---GRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMER---GWYDTGDIV 599

Query: 441 VRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLS-NPKVLEAAVVGKVDDQLKEVPVA 499
             +  G+VQ++ R K       E++S   VE + L  +P    A  + K D    E  V 
Sbjct: 600 RFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSPDKQHATAI-KSDASKGEALVL 658

Query: 500 FVK---------LKEGREASPEELVTFCGDELPSCMVPRAI-FFEDIPVNSTGKVQKFVL 549
           F            +  RE    EL            VPR I + + +P+  +GK     L
Sbjct: 659 FTTDSELTREKLQQYAREHGVPELA-----------VPRDIRYLKQLPLLGSGKPDFVTL 707

Query: 550 RGKV 553
           +  V
Sbjct: 708 KSMV 711

Length = 718

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 19/79 (24%), Positives = 35/79 (44%)

Query: 46  FSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLD 105
           +++ +  +   + A+ L  L + RGD VA + P +P L+ +       GAV     T+L 
Sbjct: 1   WTFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLG 60

Query: 106 SATLASILRQLEAKIIFVD 124
              +   L +  A+ I   
Sbjct: 61  PKDIRYRLERAGARAIVTS 79

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 20/79 (25%), Positives = 33/79 (41%)

Query: 46  FSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLD 105
            S+ +  +   ++A+ LA L +  GD VA + P  P L     A    GA+   L T   
Sbjct: 1   LSYAELREQSARVANLLADLGVKPGDRVAGLLPRTPELVVAILATWRVGAIYVPLFTAFG 60

Query: 106 SATLASILRQLEAKIIFVD 124
              +   L    AK++  +
Sbjct: 61  PKAIEYRLGHSGAKVVVTN 79

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 41.3 bits (97), Expect = 0.002
 Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 192  QPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRD 237
             P H+   I   YTSGSTG PKGVV SH    ++  A I R  +R 
Sbjct: 2331 LPQHQAYLI---YTSGSTGKPKGVVVSHGEIAMHCQAVIERFGMRA 2373

Length = 4334

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score = 41.0 bits (97), Expect = 0.002
 Identities = 40/215 (18%), Positives = 71/215 (33%), Gaps = 43/215 (20%)

Query: 24  DFLERAAHVYGDATSIIY-----GTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAP 78
           D L   A    D   +       G  R ++ +  +    +A AL    +S    +  ++ 
Sbjct: 43  DRLVHWAQEAPDRVFLAERGADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSG 102

Query: 79  N-----IPALYKLHFAVPMAG-----AVLSALNTRLDSATLASILRQLEAKIIFVDYQFV 128
           N     + AL  ++  VP A      +++S      D   L  +L  L   ++F D    
Sbjct: 103 NSIEHALLALAAMYAGVPYAPVSPAYSLVSQ-----DFGKLRHVLELLTPGLVFADD--G 155

Query: 129 EVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADF 188
                AL  + P        ++                       +  +  LL       
Sbjct: 156 AAFARALAAVVPAD----VEVVAVRGAVP-------------GRAATPFAALLATPPTA- 197

Query: 189 EMMQPNHECDPISVN---YTSGSTGDPKGVVYSHR 220
            +   +    P ++    +TSGSTG PK V+ +HR
Sbjct: 198 AVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHR 232

Length = 614

>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 45/144 (31%), Positives = 60/144 (41%), Gaps = 25/144 (17%)

Query: 421 NPKATEEAFRNG--WYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNP 478
           N K   + F+ G   + +GD+ V +  GY+  KDR  D      E +S+ EVE + LSN 
Sbjct: 336 NKKIARDVFKKGDSAFLSGDVLVMDELGYLYFKDRTGDTFRWKGENVSTTEVEGI-LSNV 394

Query: 479 KVLEAAVVGKVDDQLKEVPVAFVKLKEGRE-----ASPEE---LVTFCGD---ELPSCMV 527
             LE  VV  V     EVP       EGR        PE    L  F       LP    
Sbjct: 395 LGLEDVVVYGV-----EVPGV-----EGRAGMAAIVDPERKVDLDRFSAVLAKSLPPYAR 444

Query: 528 PRAI-FFEDIPVNSTGKVQKFVLR 550
           P+ I    ++    T K+QK  L+
Sbjct: 445 PQFIRLLPEVDKTGTFKLQKTDLQ 468

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score = 39.6 bits (93), Expect = 0.004
 Identities = 20/76 (26%), Positives = 35/76 (46%)

Query: 21  TPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNI 80
           T +D  + A   +GD  ++ +     ++ +  +   + A+ L  L +  GD VA + PN 
Sbjct: 33  TLVDLYDNAVARFGDRPALDFFGATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNC 92

Query: 81  PALYKLHFAVPMAGAV 96
           P      +AV   GAV
Sbjct: 93  PQHIVAFYAVLRLGAV 108

Length = 573

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score = 39.9 bits (94), Expect = 0.004
 Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 2/50 (4%)

Query: 175 LDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYL 224
           + ++DL+    A  E    + E DP+ + YTSGSTG PKGV+++  G YL
Sbjct: 215 VWWHDLMAKASAYCEPEPMDSE-DPLFILYTSGSTGKPKGVLHT-TGGYL 262

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 40.2 bits (94), Expect = 0.004
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 5/60 (8%)

Query: 404 LGEVMFRANTVMLGYFKNPKATEEAF--RNG--WYHTGDLAVRNPDGYVQMKDRRKDIII 459
           +GE+     ++  GY++NP+A+ + F   +G  W  TGDL     DG + +  R KD++I
Sbjct: 397 VGEIWASGPSIAHGYWRNPEASAKTFVEHDGRTWLRTGDLGFLR-DGELFVTGRLKDMLI 455

Length = 4334

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	562
KOG1176	537	consensus Acyl-CoA synthetase [Lipid transport and	100.0
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
PLN03102	579	acyl-activating enzyme; Provisional	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
PLN02654	666	acetate-CoA ligase	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
PLN02479	567	acetate-CoA ligase	100.0
PRK08162	545	acyl-CoA synthetase; Validated	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
PLN02614	666	long-chain acyl-CoA synthetase	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
PRK07470	528	acyl-CoA synthetase; Validated	100.0
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05857	540	acyl-CoA synthetase; Validated	100.0
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
PRK08316	523	acyl-CoA synthetase; Validated	100.0
PRK07638	487	acyl-CoA synthetase; Validated	100.0
PRK09274	552	peptide synthase; Provisional	100.0
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	100.0
PRK06145	497	acyl-CoA synthetase; Validated	100.0
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN03052	728	acetate--CoA ligase; Provisional	100.0
PRK07867	529	acyl-CoA synthetase; Validated	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PLN02330	546	4-coumarate--CoA ligase-like 1	100.0
PRK06188	524	acyl-CoA synthetase; Validated	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	100.0
PRK06018	542	putative acyl-CoA synthetase; Provisional	100.0
PRK08315	559	AMP-binding domain protein; Validated	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
PRK13388	540	acyl-CoA synthetase; Provisional	100.0
PRK12583	558	acyl-CoA synthetase; Provisional	100.0
PRK06164	540	acyl-CoA synthetase; Validated	100.0
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	100.0
PRK07514	504	malonyl-CoA synthase; Validated	100.0
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	100.0
PRK10946	536	entE enterobactin synthase subunit E; Provisional	100.0
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	100.0
PRK06178	567	acyl-CoA synthetase; Validated	100.0
PRK09088	488	acyl-CoA synthetase; Validated	100.0
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	100.0
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	100.0
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK13383	516	acyl-CoA synthetase; Provisional	100.0
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	100.0
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	100.0
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PLN02430	660	long-chain-fatty-acid-CoA ligase	100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	100.0
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	100.0
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	100.0
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	100.0
PRK07798	533	acyl-CoA synthetase; Validated	100.0
PTZ00216	700	acyl-CoA synthetase; Provisional	100.0
PRK08180	614	feruloyl-CoA synthase; Reviewed	100.0
PRK07787	471	acyl-CoA synthetase; Validated	100.0
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	100.0
KOG1175	626	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PRK13390	501	acyl-CoA synthetase; Provisional	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	100.0
KOG1256	691	consensus Long-chain acyl-CoA synthetases (AMP-for	100.0
PLN03051	499	acyl-activating enzyme; Provisional	100.0
PRK13391	511	acyl-CoA synthetase; Provisional	100.0
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK07868	994	acyl-CoA synthetase; Validated	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK05850	578	acyl-CoA synthetase; Validated	100.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
KOG1180	678	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PRK12582	624	acyl-CoA synthetase; Provisional	100.0
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	100.0
PRK09192	579	acyl-CoA synthetase; Validated	100.0
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08308	414	acyl-CoA synthetase; Validated	100.0
KOG1179	649	consensus Very long-chain acyl-CoA synthetase/fatt	100.0
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	100.0
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	100.0
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PTZ00297	1452	pantothenate kinase; Provisional	100.0
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	100.0
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	100.0
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	100.0
KOG3628	1363	consensus Predicted AMP-binding protein [General f	100.0
KOG1178	1032	consensus Non-ribosomal peptide synthetase/alpha-a	99.98
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.97
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.96
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	99.94
PRK09188	365	serine/threonine protein kinase; Provisional	99.87
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.86
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	99.76
PF13193	73	AMP-binding_C: AMP-binding enzyme C-terminal domai	99.28
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	98.92
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	98.54
PLN02249	597	indole-3-acetic acid-amido synthetase	97.98
PF14535	96	AMP-binding_C_2: AMP-binding enzyme C-terminal dom	97.74
PLN02247	606	indole-3-acetic acid-amido synthetase	97.7
PLN02620	612	indole-3-acetic acid-amido synthetase	97.55
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	95.33
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	90.99
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	90.2
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	85.54

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=7.6e-81  Score=622.65  Aligned_cols=510  Identities=37%  Similarity=0.584  Sum_probs=428.6

Q ss_pred             CCCCChHHHHHHHHHHcCCc-eEEEECC---eeccHHHHHHHHHHHHHHHHHcC--CCCCCEEEEEcCCcHHHHHHHHHh
Q 008535           17 NVPLTPIDFLERAAHVYGDA-TSIIYGT---VRFSWRQTHQICLKLASALAQLK--ISRGDIVAAMAPNIPALYKLHFAV   90 (562)
Q Consensus        17 ~~~~ti~~~l~~~a~~~p~~-~a~~~~~---~~~Ty~el~~~~~~~a~~L~~~g--v~~gd~V~i~~~~~~~~~~~~lA~   90 (562)
                      ..+.+....+.+.+...+++ +.+++..   +.+||+|+++++.++|..|.+.|  +++||+|++++||+++++.+++||
T Consensus        13 ~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~   92 (537)
T KOG1176|consen   13 NTPLTPITFLGRPAFVYLDRNTSLVYQDSDGRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAV   92 (537)
T ss_pred             CccccccccccccccccccCcceEEEecCCCcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            33334444444455455444 6676654   89999999999999999999876  899999999999999999999999


Q ss_pred             hhccceEEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCC
Q 008535           91 PMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNF  170 (562)
Q Consensus        91 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (562)
                      +++|+++.+++|.+.+.++...++.++++++|++......+.+....+.        ..++.+.........    ..  
T Consensus        93 ~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~--------~~i~~l~~~~~~~~~----~~--  158 (537)
T KOG1176|consen   93 PMAGAVLNPLNPRLTASEIAKQLKDSKPKLIFVDEDFYDKISEATSKLA--------LKIIVLTGDEGVISI----SD--  158 (537)
T ss_pred             HHcCccccccCcccCHHHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcC--------CceEEEecccCcccc----cc--
Confidence            9999999999999999999999999999999999999998887766543        233333322110000    00  


Q ss_pred             CCCCCc-hhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeeccccc
Q 008535          171 PSGSLD-YNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFR  249 (562)
Q Consensus       171 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~  249 (562)
                      ...... +..+........  ..+...+|++.+.|||||||.||||++||+++..+.......+.+...++.++.+|++|
T Consensus       159 ~~~~~~~~~~~~~~~~~~~--~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~~~~~~v~l~~lPl~H  236 (537)
T KOG1176|consen  159 LVEDLDAFEDLMPEGLPDG--IRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGWELTSDDVYLCTLPLFH  236 (537)
T ss_pred             ccccccchhhccccCCCcc--cccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcccCCCCceEEEechHHH
Confidence            000011 333333332222  44567799999999999999999999999999999888888888888999999999999


Q ss_pred             chhhHHHHHhHhhc-eEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHH
Q 008535          250 CNGWCCTWAMAAVG-GINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVL  328 (562)
Q Consensus       250 ~~gl~~~~~~~~~g-~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~  328 (562)
                      .+|+...+.+.+.+ +++++.+.+++..+++.+++|++|+++++|.++..|++.+.....++++++.+.+||++++++..
T Consensus       237 ~~Gl~~~~~~~~~~~~~ii~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~~~~~~l~sl~~v~~gga~~~~~~~  316 (537)
T KOG1176|consen  237 IYGLITLLLSLLAGGTTIICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAKSPIVKKYDLSSLRSVLSGGAPLSPATL  316 (537)
T ss_pred             HhHHHHHHHHHHhCCceEEECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhcCCccCcccCCccEEEEecCCCCCHHHH
Confidence            99999988865554 55555567899999999999999999999999999999987777899999999999999999999


Q ss_pred             HHHH-hcC-CeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeE
Q 008535          329 EQVA-NFG-FNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGE  406 (562)
Q Consensus       329 ~~~~-~~~-~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Ge  406 (562)
                      +.++ .++ ..+.+.||+||+++.++.+.+.+.           .....+|.+.++. ...+.+ ++|..++.+  +.||
T Consensus       317 ~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e-----------~k~~svG~~~~g~-~~~v~~-e~g~~l~~~--~~GE  381 (537)
T KOG1176|consen  317 EKVKERLPNVTVIQGYGMTEAGGLITSNDWGPE-----------RKPGSVGRLLPGV-RVKVLD-ETGVSLGPN--QTGE  381 (537)
T ss_pred             HHHHHhCCCceEEEeeccccccCceeecCCCcc-----------CcccccCccccce-EEEeeC-CCCCCCCCC--CceE
Confidence            9998 566 889999999999988887654432           2345677777743 444444 578877776  6699


Q ss_pred             EEEcchhhhhhhcCCchhhHhhhcc-ceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEE
Q 008535          407 VMFRANTVMLGYFKNPKATEEAFRN-GWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAV  485 (562)
Q Consensus       407 l~v~~~~~~~gy~~~~~~~~~~~~~-g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v  485 (562)
                      ||++|++++.||++||+.|++.|.+ |||+|||+|++|+||++||.+|++|+||.+|++|+|.|||++|..||.|.|++|
T Consensus       382 I~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy~D~DG~l~IvdR~KdlIk~~G~qv~P~EiE~vL~~hP~V~eaaV  461 (537)
T KOG1176|consen  382 ICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLGYFDEDGYLYIVDRSKDLIKYGGEQVSPAEIEAVLLTHPDVLEAAV  461 (537)
T ss_pred             EEEECcccchhhcCChHHHHhhcccCCccccCceEEEcCCCeEEEecchhhheeeCCEEeCHHHHHHHHHhCCCccEEEE
Confidence            9999999999999999999999986 999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhhc
Q 008535          486 VGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNATA  557 (562)
Q Consensus       486 ~~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~~  557 (562)
                      ++.+++.+|+.+.|+|+.+++...+.+++.+++++++++|++|..++|++ ||||++||++|+.||+++.+..
T Consensus       462 vgipDe~~Ge~p~A~VV~k~g~~lte~di~~~v~k~l~~y~~~~~V~Fvd~lPKs~~GKi~R~~lr~~~~~~~  534 (537)
T KOG1176|consen  462 VGIPDEVWGETPAAFVVLKKGSTLTEKDIIEYVRKKLPAYKLPGGVVFVDELPKTPNGKILRRKLRDIAKKLG  534 (537)
T ss_pred             EcccccccCCcceEEEEecCCCcCCHHHHHHHHHhhCChhhccCeEEEeccCCCCCcchHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999998775 9999999999999999998753

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=100.00  E-value=1.4e-78  Score=563.08  Aligned_cols=515  Identities=27%  Similarity=0.370  Sum_probs=439.2

Q ss_pred             CCCCChHHHHHHHHHHcCCceEEEE--CCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhcc
Q 008535           17 NVPLTPIDFLERAAHVYGDATSIIY--GTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAG   94 (562)
Q Consensus        17 ~~~~ti~~~l~~~a~~~p~~~a~~~--~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G   94 (562)
                      -...|+.++|+..++..||+.|++.  .+-++||+||.+.++++|.+|.++|+++||+|++..||+.+|+.++|||.++|
T Consensus        47 l~~~Tigq~l~~~t~~v~dkea~Vf~~eg~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~~w~l~~lA~A~AG  126 (596)
T KOG1177|consen   47 LDSETIGQLLETTTERVPDKEAAVFDHEGIRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSYEWVLCQLACARAG  126 (596)
T ss_pred             cccccHHHHHHHHhhccCcceEEEEeeccchhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChHHHHHHHHHHHHhc
Confidence            3456999999999999999988776  45679999999999999999999999999999999999999999999999999


Q ss_pred             ceEEecCCCCCHHHHHHHHhhCCceEEEEeccc-----hHHHHHHHhhcCCCC----cCCCC---CceeccCCCCCCCCC
Q 008535           95 AVLSALNTRLDSATLASILRQLEAKIIFVDYQF-----VEVVQNALDILSPNH----KCDKA---PLLVTIPECDHYQPS  162 (562)
Q Consensus        95 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~-----~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~~~~~~~~  162 (562)
                      .+.+++||.+..++++..|++.+++++|+...+     ++.+.++...+....    +...+   ..++..++       
T Consensus       127 ~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~e-------  199 (596)
T KOG1177|consen  127 LVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTHVILADE-------  199 (596)
T ss_pred             eEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccceEEEecCC-------
Confidence            999999999999999999999999999987643     334444444332221    11111   12222221       


Q ss_pred             cccccCCCCCCCCchhhhhhcccCcc----ccC-CCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCC
Q 008535          163 TCSVANNFPSGSLDYNDLLEMGKADF----EMM-QPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRD  237 (562)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~  237 (562)
                           +....|.+.+++++.......    +.. ....++|++.|.|||||||.|||+.+||-+++.++......+++.+
T Consensus       200 -----d~~~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~g~~e  274 (596)
T KOG1177|consen  200 -----DHPLPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARAGYNE  274 (596)
T ss_pred             -----CCcCCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHhCcCc
Confidence                 112245566777776553321    111 1246799999999999999999999999999999999999999999


Q ss_pred             CCeeeeecccccchhhH-HHHHhHhhceEEEEe-ccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEE
Q 008535          238 MPVFLWTLDMFRCNGWC-CTWAMAAVGGINVCI-RTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVI  315 (562)
Q Consensus       238 ~~~~l~~~pl~~~~gl~-~~~~~~~~g~~~v~~-~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~  315 (562)
                      .+++.+..|++|.+|.. ..+.++..|++++++ +.+++.+.++.|+++++|.++++|.+|..|++.++..+.+++++|.
T Consensus       275 ~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~~~~s~lr~  354 (596)
T KOG1177|consen  275 KHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQVDLSSLRK  354 (596)
T ss_pred             ceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcchhhccCchhhhhh
Confidence            99999999999999954 678888899999985 4699999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCChHHHHHHHH-hcCC-eeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCC
Q 008535          316 IVIAGVLPTIEVLEQVA-NFGF-NIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNT  393 (562)
Q Consensus       316 i~~~g~~l~~~~~~~~~-~~~~-~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~  393 (562)
                      ++.||+++++++++.+. +.+. .+...||+||+++..+......         .....-.++|...+.. +..+++ ..
T Consensus       355 ~vigGa~~s~eLlk~iv~~~~m~~i~v~YG~TEts~v~~~~~~~D---------~~~~~~ksVG~~m~h~-Ea~iv~-~~  423 (596)
T KOG1177|consen  355 GVIGGAPVSPELLKLIVNQMNMKDIAVAYGLTETSPVLFMSLLGD---------PPEERIKSVGHLMDHY-EAAIVD-KD  423 (596)
T ss_pred             heeCCCCCCHHHHHHHHHhhCceeeEEEeeccccCcceeeecCCC---------CHHHHHhhhhhccccc-cccccc-CC
Confidence            99999999999999987 4554 4778999999998777654322         1223335677777777 888988 58


Q ss_pred             cccccCCCCceeEEEEcchhhhhhhcCCchhhHhhh-ccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHH
Q 008535          394 MKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAF-RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEA  472 (562)
Q Consensus       394 ~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~  472 (562)
                      |..++.+.+  |||+++|+..+.|||++++.|++.. +|.||+|||+|.+|++|.++++||++|+|+.+|++|+|.+||+
T Consensus       424 g~~v~~~~~--Gel~iRGY~tMl~Ywg~~~kT~eti~~drW~~TGDi~~m~enG~i~iVGRskdmI~rGGENVyP~ElE~  501 (596)
T KOG1177|consen  424 GSEVPLGTK--GELLIRGYSTMLGYWGEEEKTKETIGNDRWYDTGDIAVMDENGTIEIVGRSKDMIIRGGENVYPTELED  501 (596)
T ss_pred             CCccccCCC--ceEEEEechhheeecCCcccchhhcccccceecCceEEEcCCCcEEEEEcccCeEEeCCcccChHHHHH
Confidence            888888855  9999999999999999998888876 5889999999999999999999999999999999999999999


Q ss_pred             HHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCCC--CCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHH
Q 008535          473 VLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGRE--ASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVL  549 (562)
Q Consensus       473 ~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~--~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l  549 (562)
                      .|.+||.|.++.|++++++..|+.++|+|.++++..  .+.++|+++|+.++..+++|+++.+++ +|+|.+|||+|.++
T Consensus       502 fL~~hp~V~~a~VVGV~D~R~GE~VCA~vRLqe~~e~~~t~E~lKa~Ck~klaHFKiPky~vf~~~FPlT~tGKIqKFei  581 (596)
T KOG1177|consen  502 FLNKHPLVKEAHVVGVPDERLGEEVCACVRLQEGAEGKTTAETLKAMCKGKLAHFKIPKYFVFVDEFPLTTTGKIQKFEI  581 (596)
T ss_pred             HHhhCCCeeeEEEEccCCCcccceEEEEEEeeccccccccHHHHHHHHhcccccccCCcEEEEeccCcccccccchhHHH
Confidence            999999999999999999999999999999998866  488999999999999999999988765 99999999999999


Q ss_pred             hhhhhhh
Q 008535          550 RGKVNAT  556 (562)
Q Consensus       550 ~~~~~~~  556 (562)
                      +++++..
T Consensus       582 r~~~k~~  588 (596)
T KOG1177|consen  582 REMSKGH  588 (596)
T ss_pred             HHHHHhh
Confidence            9998843

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=8.2e-76  Score=609.35  Aligned_cols=508  Identities=31%  Similarity=0.423  Sum_probs=431.2

Q ss_pred             cCCCCCChHHHHHHHHHHcCCceEEEECCee--ccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhh
Q 008535           15 ANNVPLTPIDFLERAAHVYGDATSIIYGTVR--FSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPM   92 (562)
Q Consensus        15 ~~~~~~ti~~~l~~~a~~~p~~~a~~~~~~~--~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~   92 (562)
                      ......++.++|.++++.+|+++|+.+.+..  +||+||.+++.++|+.|++.|+++||+|+|+++|++++++++|||++
T Consensus         6 ~~~~~~~~~~~l~~~a~~~~~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~~a~~~   85 (534)
T COG0318           6 RMTAELTLASLLERAARRNPDRPALIFLGRGGRLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALR   85 (534)
T ss_pred             cccccccHHHHHHHHHHhCCCceEEEEcCCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHh
Confidence            3456679999999999999999999998877  99999999999999999999999999999999999999999999999


Q ss_pred             ccceEEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCC
Q 008535           93 AGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPS  172 (562)
Q Consensus        93 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (562)
                      +|++++|++|.++..++.++++.+++++++++....+...........      ...+..........            
T Consensus        86 ~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~------------  147 (534)
T COG0318          86 AGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEALPV------VLVVLLVGDADDRL------------  147 (534)
T ss_pred             cCEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccCCc------ceEEEecccccccc------------
Confidence            999999999999999999999999999999998855555544332210      11111111111000            


Q ss_pred             CCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcC--CCCCCeeeeecccccc
Q 008535          173 GSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCD--VRDMPVFLWTLDMFRC  250 (562)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~--~~~~~~~l~~~pl~~~  250 (562)
                      . .++.++....+.........+++|+++++|||||||.||||++||+++..+.......+.  +.+.|++++++|++|.
T Consensus       148 ~-~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~  226 (534)
T COG0318         148 P-ITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHI  226 (534)
T ss_pred             c-ccHHHHhhccCCcccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCCCceEEEecChHHH
Confidence            0 234444332222222222256889999999999999999999999999999988888888  8999999999999999


Q ss_pred             hhhHHHHHh-HhhceEEEEec--cCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccc-eEEEEEeCCCChHH
Q 008535          251 NGWCCTWAM-AAVGGINVCIR--TVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQR-KVIIVIAGVLPTIE  326 (562)
Q Consensus       251 ~gl~~~~~~-~~~g~~~v~~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~-l~~i~~~g~~l~~~  326 (562)
                      +|+...+.+ ++.|++.++.+  .+++..++..+.++++++++++|.++..|+........++++ +|.++.||++++++
T Consensus       227 ~Gl~~~~~~~~~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~~~~~~~lr~~~~gg~~~~~~  306 (534)
T COG0318         227 FGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAPLPPE  306 (534)
T ss_pred             HHHHHHHHHHHHcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCccccccceEEEEecCCcCCHH
Confidence            999976666 67777777776  599999999999999999999999999999998777776776 99999999999999


Q ss_pred             HHHHHH-hcC-CeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCce
Q 008535          327 VLEQVA-NFG-FNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTL  404 (562)
Q Consensus       327 ~~~~~~-~~~-~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~  404 (562)
                      ++++++ .++ ..+++.||+||+++.++...... .         .......|.+.++. +++|+|.+.+.+.|   +++
T Consensus       307 ~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~-~---------~~~~~~~G~~~pg~-~v~Ivd~~~~~~~p---g~v  372 (534)
T COG0318         307 LLERFEERFGPIAILEGYGLTETSPVVTINPPDD-L---------LAKPGSVGRPLPGV-EVRIVDPDGGEVLP---GEV  372 (534)
T ss_pred             HHHHHHHHhCCCceEEeecccccCceeecCCCch-h---------hhcCCcccccCCCc-EEEEEeCCCCccCC---CCc
Confidence            999999 566 47999999999987776654322 1         11233447777776 88888886665555   368


Q ss_pred             eEEEEcchhhhhhhcCCchhhHhhhcc-ceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeE
Q 008535          405 GEVMFRANTVMLGYFKNPKATEEAFRN-GWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEA  483 (562)
Q Consensus       405 Gel~v~~~~~~~gy~~~~~~~~~~~~~-g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~  483 (562)
                      |||+|+||+++.||+++|+.|.+.|.+ |||+|||+|++|++|.++|.||.+|+|+.+|++|+|.+||+++.+||.|.++
T Consensus       373 Gei~irgp~v~~GY~~~pe~t~~~f~~~gW~~TGDlg~~d~~G~l~i~gR~kd~I~~gG~ni~p~eiE~~l~~~~~V~~a  452 (534)
T COG0318         373 GEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAEA  452 (534)
T ss_pred             eEEEEECchhhhhhcCChHHHHHhhccCCeeeecceEEEcCCccEEEEeccceEEEeCCeEECHHHHHHHHHhCCCcceE
Confidence            999999999999999999999998886 9999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeeCCCCCceeEEEEEeCCC--CCCCHHHHHHHHhccCCCCCCCcEEEee-cccCCCCCcchHHHHhhhhhh
Q 008535          484 AVVGKVDDQLKEVPVAFVKLKEG--REASPEELVTFCGDELPSCMVPRAIFFE-DIPVNSTGKVQKFVLRGKVNA  555 (562)
Q Consensus       484 ~v~~~~~~~~~~~~v~~v~~~~~--~~~~~~~l~~~~~~~l~~~~~p~~i~~~-~lP~t~~GKv~r~~l~~~~~~  555 (562)
                      +|++++++.+|+.++++++++++  ...+.+++.++++++++.+++|+.+.++ +||+|++||++|+.|++.+.+
T Consensus       453 avvgvpd~~~Ge~~~a~v~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~v~~v~~lP~t~sGKi~r~~lr~~~~~  527 (534)
T COG0318         453 AVVGVPDERWGERVVAVVVLKPGGDAELTAEELRAFLRKRLALYKVPRIVVFVDELPRTASGKIDRRALREEYRA  527 (534)
T ss_pred             EEEeCCCCccCceEEEEEEEcCCCCCCCCHHHHHHHHHhhhhcccCCeEEEEeCCCCCCCchhhhHHHHHHHHHh
Confidence            99999999999999999999876  3457899999999999999999999986 599999999999999999887

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=4.3e-75  Score=577.85  Aligned_cols=491  Identities=27%  Similarity=0.381  Sum_probs=409.3

Q ss_pred             HHHHHHHH-cCCceEEEECC-----eeccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHhhhccceE
Q 008535           25 FLERAAHV-YGDATSIIYGT-----VRFSWRQTHQICLKLASALAQ-LKISRGDIVAAMAPNIPALYKLHFAVPMAGAVL   97 (562)
Q Consensus        25 ~l~~~a~~-~p~~~a~~~~~-----~~~Ty~el~~~~~~~a~~L~~-~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~   97 (562)
                      .++++.+. .+++.|+++.+     +++||+||.+.++++|+.|.+ .|+ +||+|++++|+.+|.++++|||+++|+++
T Consensus        14 ~~dr~~~~~~~~~~aii~~~e~~~~~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA~~riGAI~   92 (528)
T COG0365          14 ALDRHLEADRPDDTAIIFDGEDGLFRELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATARIGAIP   92 (528)
T ss_pred             hhhhhhhccCCCceEEEEEcCCCCceEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHHHHHcCCEE
Confidence            46666653 47889988853     679999999999999999987 668 99999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCch
Q 008535           98 SALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDY  177 (562)
Q Consensus        98 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (562)
                      +|+.+.++++.+...+++++++++|+++......+...-...... .  ...++.....                + ..|
T Consensus        93 ~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~-~--~~~~iv~~r~----------------~-~~~  152 (528)
T COG0365          93 AVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADA-V--LSSVVVVPRL----------------G-LWY  152 (528)
T ss_pred             eecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHH-h--hcceEEeccc----------------c-ccH
Confidence            999999999999999999999999998876543321110000000 0  0001111111                1 455


Q ss_pred             hhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHH-HHhhcCCCCCCeeeeecccccchhhHH-
Q 008535          178 NDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLA-QISRCDVRDMPVFLWTLDMFRCNGWCC-  255 (562)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~-~~~~~~~~~~~~~l~~~pl~~~~gl~~-  255 (562)
                      .+..+......... +...+|+++++|||||||+||||+++|..+...... ....+.+.++|+++++.+..|++|.+. 
T Consensus       153 ~~~~~~~~~~~~~~-~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w~~ad~GW~~g~~~~  231 (528)
T COG0365         153 DEAVEKASEKFEFE-PLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYS  231 (528)
T ss_pred             HHHhhccCCCCCcc-ccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEEeCCCchhhhCchHH
Confidence            55555443333222 267889999999999999999999999976655554 445678889999999999999999886 


Q ss_pred             HHHhHhhceEEEEecc--C-CHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHH
Q 008535          256 TWAMAAVGGINVCIRT--V-SAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVA  332 (562)
Q Consensus       256 ~~~~~~~g~~~v~~~~--~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~  332 (562)
                      .+.++..|++.++.+.  + +++.+++.|+++++|++++.|..++.|.+....+..++++||.+.+.||+++++.++++.
T Consensus       232 v~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~~~~~dlssLr~~~SaGEPLnpe~~~w~~  311 (528)
T COG0365         232 VFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGLGEPYDLSSLRVLGSAGEPLNPEAFEWFY  311 (528)
T ss_pred             HHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCCcccccchhheeeeccCCCCCHHHHHHHH
Confidence            7888899999988752  3 499999999999999999999999999998876678899999999999999999999998


Q ss_pred             -hcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcc
Q 008535          333 -NFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRA  411 (562)
Q Consensus       333 -~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~  411 (562)
                       .+|+++.+.||+||++++......             +..+...|.|.+++ .++++|++ +++++.+  + |+|+++.
T Consensus       312 ~~~g~~i~d~~gqTEtg~~~~~~~~-------------~~~~g~~g~p~pG~-~~~vvdd~-g~~~~~~--~-G~Lvi~~  373 (528)
T COG0365         312 SALGVWILDIYGQTETGMGFIAGRP-------------PVKNGSSGLPLPGY-AVRRVDDE-GNPVPPG--V-GELVVRL  373 (528)
T ss_pred             HHhCCCEeccccccccCccccCCCC-------------CcCCCCCCCCCCCc-eeEEECCC-CCcCCCC--c-eEEEEeC
Confidence             569999999999999855444321             22334558888888 88999986 8888776  5 9999998


Q ss_pred             h--hhhhhhcCCchhhHhhhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeee
Q 008535          412 N--TVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKV  489 (562)
Q Consensus       412 ~--~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~  489 (562)
                      +  +.+.+||++++.+.+.|.+.||.|||.+++|+||.++|.||.||+||+.|.++.+.|||++|.+||.|.||+|++.+
T Consensus       374 ~~p~~~~~~w~d~er~~~~y~~~~y~tGD~~~~DedGy~~i~GR~DDvI~vsG~Rig~~EvE~~l~~hP~VaEaAvVg~p  453 (528)
T COG0365         374 PWPGMALTYWNDPERYKEAYFGRWYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVP  453 (528)
T ss_pred             CCchhhhhhhCCHHHHHHHHhhceeecCceeEEccCCCEEEEeeccceEeccCeeccHHHHHHHHHhCcceeeeEEEecc
Confidence            7  89999999999999998777999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCceeEEEEEeCCCCCCC--HHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhh
Q 008535          490 DDQLKEVPVAFVKLKEGREAS--PEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNA  555 (562)
Q Consensus       490 ~~~~~~~~v~~v~~~~~~~~~--~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~  555 (562)
                      ++..|+.+++||+++++...+  .++|++++++.+.+++.|+.|.+++ ||||.||||.|+.||+.+.+
T Consensus       454 d~~kg~~v~afVvL~~g~~~~~L~~ei~~~vr~~~~~~~~p~~i~fv~~LPkT~sGKI~R~~lr~~~~~  522 (528)
T COG0365         454 DPGKGQIVLAFVVLAAGVEPNELAEEIRRHVARNIGPHAIPRKIRFVDELPKTASGKIQRRLLRKILHK  522 (528)
T ss_pred             CCCCCcEEEEEEEecCCCChHHHHHHHHHHHHhccCcccCCceEEEecCCCCCCcccHHHHHHHHHHhh
Confidence            999999999999999875433  4677778877888899999999876 99999999999999999884

>PLN03102 acyl-activating enzyme; Provisional

Probab=100.00  E-value=2e-71  Score=584.85  Aligned_cols=532  Identities=45%  Similarity=0.801  Sum_probs=427.5

Q ss_pred             ccCCCCCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhc
Q 008535           14 SANNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMA   93 (562)
Q Consensus        14 ~~~~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~   93 (562)
                      ..++++.|+.++|++.++.+|+++|+.+.+.++||+||+++++++|+.|.++|+++||+|+++++|++++++++|||+++
T Consensus         8 ~~~~~~~~~~~~l~~~~~~~p~~~Al~~~~~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~~~~   87 (579)
T PLN03102          8 EANNVPLTPITFLKRASECYPNRTSIIYGKTRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMA   87 (579)
T ss_pred             ccccccccHHHHHHHHHHhCCCCeEEEECCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhc
Confidence            34456679999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceEEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCC
Q 008535           94 GAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSG  173 (562)
Q Consensus        94 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (562)
                      |++++|+++..+.+++.++++.++++++|++.+..+.+........... ......++.++......       . ....
T Consensus        88 G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------~-~~~~  158 (579)
T PLN03102         88 GAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSED-SNLNLPVIFIHEIDFPK-------R-PSSE  158 (579)
T ss_pred             CcEEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccc-cccCceEEEeccccccc-------C-Cccc
Confidence            9999999999999999999999999999999887766665544322100 00011233332211000       0 0011


Q ss_pred             CCchhhhhhcccCccc----cCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeeccccc
Q 008535          174 SLDYNDLLEMGKADFE----MMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFR  249 (562)
Q Consensus       174 ~~~~~~~~~~~~~~~~----~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~  249 (562)
                      ..++.++.+.......    ......++++++|+|||||||.||+|.++|+++..........+.+...+++++.+|++|
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h  238 (579)
T PLN03102        159 ELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPMFH  238 (579)
T ss_pred             ccCHHHHHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcCCCCCCeEEecCChhh
Confidence            2344444432221111    011234679999999999999999999999997666555555666777889999999999


Q ss_pred             chhhHHHHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHH
Q 008535          250 CNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLE  329 (562)
Q Consensus       250 ~~gl~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~  329 (562)
                      ..++...+.++..|+++++.+.+++..+++.|+++++|++.++|+++..|++.........++++.+++||++++++..+
T Consensus       239 ~~g~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~  318 (579)
T PLN03102        239 CNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLSPRSGPVHVLTGGSPPPAALVK  318 (579)
T ss_pred             hcchhHHHHHHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCcccccCCcccceEEEECCCCCCHHHHH
Confidence            99988888888899999998888999999999999999999999999999887544444556788899999999999999


Q ss_pred             HHHhcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEE
Q 008535          330 QVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMF  409 (562)
Q Consensus       330 ~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v  409 (562)
                      .+++++.++++.||+||+++.++.+.....+.... ...........|.++.+...+++.+.+.+++++.++++.|||++
T Consensus       319 ~~~~~g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~v~i~~~~~~~~v~~~~~~~GEl~v  397 (579)
T PLN03102        319 KVQRLGFQVMHAYGLTEATGPVLFCEWQDEWNRLP-ENQQMELKARQGVSILGLADVDVKNKETQESVPRDGKTMGEIVI  397 (579)
T ss_pred             HHHHcCCeEEeecCccccCccccccccccccccCC-cccccccccCCCcccccccceEEeccccccccCCCCCCceEEEE
Confidence            99888999999999999987655432211110000 00000111234555566667888887777777765556799999


Q ss_pred             cchhhhhhhcCCchhhHhhhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeee
Q 008535          410 RANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKV  489 (562)
Q Consensus       410 ~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~  489 (562)
                      +|+.++.||+++++.+...|.+|||+|||+|++|+||.+++.||.+|+|+.+|.+|+|.+||++|.++|.|.+++|++.+
T Consensus       398 ~g~~~~~GY~~~~~~t~~~f~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~  477 (579)
T PLN03102        398 KGSSIMKGYLKNPKATSEAFKHGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETAVVAMP  477 (579)
T ss_pred             ECcchhhhhcCChhhhHhhhccCceecCceEEEcCCCeEEEEeccCcEEEECCEEECHHHHHHHHHhCCCcceeEEEecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCceeEEEEEeCCCCCC----------CHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhh
Q 008535          490 DDQLKEVPVAFVKLKEGREA----------SPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNA  555 (562)
Q Consensus       490 ~~~~~~~~v~~v~~~~~~~~----------~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~  555 (562)
                      ++..++.++++|++.++...          ...+++++++++++.|++|..+++.+ ||+|++||++|++|++++++
T Consensus       478 ~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~i~~~~~~P~t~~gKi~r~~L~~~~~~  554 (579)
T PLN03102        478 HPTWGETPCAFVVLEKGETTKEDRVDKLVTRERDLIEYCRENLPHFMCPRKVVFLQELPKNGNGKILKPKLRDIAKG  554 (579)
T ss_pred             CccccceeEEEEEecCcccccccccccccccHHHHHHHHHhhcccccCCeEEEEcccCCCCCcccccHHHHHHHHHH
Confidence            99888999999998765432          35689999999999999999988655 99999999999999998765

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2e-71  Score=583.62  Aligned_cols=495  Identities=25%  Similarity=0.311  Sum_probs=418.1

Q ss_pred             ChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEEec
Q 008535           21 TPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSAL  100 (562)
Q Consensus        21 ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l  100 (562)
                      ++.+++++.++.+|+++|+++.++++||+||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+
T Consensus        50 ~~~~~~~~~a~~~pd~~Al~~~~~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l  129 (549)
T PRK07788         50 PFAGLVAHAARRAPDRAALIDERGTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIILL  129 (549)
T ss_pred             hHHHHHHHHHHHCCCceEEEECCCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEEe
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCchhhh
Q 008535          101 NTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDL  180 (562)
Q Consensus       101 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (562)
                      ++.++.+++.++++.+++++++++.+..+.+.........      ...+........          ....+...+.++
T Consensus       130 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~----------~~~~~~~~~~~~  193 (549)
T PRK07788        130 NTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDLGR------LRAWGGNPDDDE----------PSGSTDETLDDL  193 (549)
T ss_pred             CCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhcccccc------ceEEEEecCccc----------cCCcCcccHHHH
Confidence            9999999999999999999999998776655443211110      111111111100          001233455555


Q ss_pred             hhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHHHHHhH
Q 008535          181 LEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAMA  260 (562)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~~~~~~  260 (562)
                      .......   ..+...+++++++|||||||.||+|.++|+++..........+++..+++++...|++|.+|+...+.++
T Consensus       194 ~~~~~~~---~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l  270 (549)
T PRK07788        194 IAGSSTA---PLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWAHLTLAM  270 (549)
T ss_pred             hcCCCCC---CCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhCCCCcCCeEEEccchHHHHHHHHHHHHH
Confidence            5432221   1223456889999999999999999999999988878877888899999999999999999998888888


Q ss_pred             hhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhcccc--ccccccceEEEEEeCCCChHHHHHHHH-hcCCe
Q 008535          261 AVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASAS--DQNQLQRKVIIVIAGVLPTIEVLEQVA-NFGFN  337 (562)
Q Consensus       261 ~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~l~~l~~i~~~g~~l~~~~~~~~~-~~~~~  337 (562)
                      ..|+++++...+++..+++.++++++|++.++|++++.|++....  ....++++|.+++||+++++++.+.++ .++..
T Consensus       271 ~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~  350 (549)
T PRK07788        271 ALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKIIFVSGSALSPELATRALEAFGPV  350 (549)
T ss_pred             HhCCEEEECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccCCCCCCceeEEEEeCCCCCHHHHHHHHHHhCcc
Confidence            899999888889999999999999999999999999999887654  445688999999999999999999998 56889


Q ss_pred             eeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhhhhh
Q 008535          338 IRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLG  417 (562)
Q Consensus       338 l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~g  417 (562)
                      +++.||+||++..+.....           ........+|.|.++. .+++++. ++.+++.|  +.|||+++|+.++.|
T Consensus       351 l~~~YG~TE~~~~~~~~~~-----------~~~~~~~~vG~~~~~~-~~~i~d~-~~~~~~~g--~~Gel~v~g~~~~~g  415 (549)
T PRK07788        351 LYNLYGSTEVAFATIATPE-----------DLAEAPGTVGRPPKGV-TVKILDE-NGNEVPRG--VVGRIFVGNGFPFEG  415 (549)
T ss_pred             ceeccCcchhchhhccChh-----------hhhhcCCCcccCCCCc-EEEEECC-CcCCCCCC--CeEEEEEeCCCcccc
Confidence            9999999998755443210           0111234678887777 7888876 56777665  789999999999999


Q ss_pred             hcCCchhhHhhhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCCCCCcee
Q 008535          418 YFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVP  497 (562)
Q Consensus       418 y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~  497 (562)
                      |++++..   .+.+|||+|||+|++|++|.+++.||.||+||++|.+|+|.+||++|.++|+|.+++|++.+++..++.+
T Consensus       416 Y~~~~~~---~~~~g~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~  492 (549)
T PRK07788        416 YTDGRDK---QIIDGLLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRL  492 (549)
T ss_pred             ccCCCcc---cccCCceecCceEEEcCCCCEEEeccCcceEEECCEEECHHHHHHHHHhCCCeeEEEEECCcCcccccEE
Confidence            9998765   3458999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhh
Q 008535          498 VAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGK  552 (562)
Q Consensus       498 v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~  552 (562)
                      +++|++.++...+.++++++++++++.|++|..+.+++ ||+|++||++|++|+++
T Consensus       493 ~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~  548 (549)
T PRK07788        493 RAFVVKAPGAALDEDAIKDYVRDNLARYKVPRDVVFLDELPRNPTGKVLKRELREM  548 (549)
T ss_pred             EEEEEeCCCCCCCHHHHHHHHHHhhhcCCCCcEEEEeCCCCCCCCcCEeHHHhhcc
Confidence            99999988777788999999999999999999888655 99999999999999864

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.4e-72  Score=511.26  Aligned_cols=506  Identities=25%  Similarity=0.363  Sum_probs=443.3

Q ss_pred             CCCCCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccc
Q 008535           16 NNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGA   95 (562)
Q Consensus        16 ~~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~   95 (562)
                      -|...++.++|.++|.++|+++|++++++.+||+||.+++.++|..|.+.|+++||+|++..||..+|++++||++++|+
T Consensus        24 yW~d~~l~d~L~~~A~~~pdriAv~d~~~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FALlrlGv  103 (542)
T COG1021          24 YWQDRTLTDILTDHAARYPDRIAVIDGERRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALLRLGV  103 (542)
T ss_pred             cccCCcHHHHHHHHHhhcCCceEEecCcccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHHHHHcCc
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEecCCCCCHHHHHHHHhhCCceEEEEeccch-----HHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCC
Q 008535           96 VLSALNTRLDSATLASILRQLEAKIIFVDYQFV-----EVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNF  170 (562)
Q Consensus        96 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (562)
                      .+|.--|.....+|..+.+..+++.+|.+....     ....+.....+.      ++.+++.++.+..           
T Consensus       104 ~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~t------lr~v~v~ge~~~~-----------  166 (542)
T COG1021         104 APVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPT------LRHVIVAGEAEHP-----------  166 (542)
T ss_pred             chhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCc------ceEEEEccCCCCc-----------
Confidence            999998999999999999999999999876432     223323222221      4555555544321           


Q ss_pred             CCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccc
Q 008535          171 PSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRC  250 (562)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~  250 (562)
                          ......+...........+.++++++++..+.||||.||.++.||.....+.....+.+++.+.+++++.+|..|.
T Consensus       167 ----~~~~~~~~~~a~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC~~~~~tvyL~~LP~AHN  242 (542)
T COG1021         167 ----SVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHN  242 (542)
T ss_pred             ----chhhhhhhCccccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhhCcCccceEEEecccccC
Confidence                1222233333333344455677899999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHH--HHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHH
Q 008535          251 NGWCC--TWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVL  328 (562)
Q Consensus       251 ~gl~~--~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~  328 (562)
                      +.+.+  .++.++.||++|+.++.+|+..+.+|+++++|+...+|.....|++..+....+++|+|.+-+||++++++..
T Consensus       243 fplssPG~LGv~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~~~~LsSLrllQVGGarl~~~~A  322 (542)
T COG1021         243 FPLSSPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWERADLSSLRLLQVGGARLSATLA  322 (542)
T ss_pred             CCCCCcchhheeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhcccCCchheeEEeecCcccCHHHH
Confidence            99874  7888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHH-hcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEE
Q 008535          329 EQVA-NFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEV  407 (562)
Q Consensus       329 ~~~~-~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel  407 (562)
                      +++. .+|+.+-+.|||.|.-  +.++..         +...+......|.|..+..+++|+|. +|+++++|  |.|+|
T Consensus       323 rrv~~~lgC~LQQVFGMAEGL--vnyTRL---------DDp~E~i~~TQGrPlsP~DEvrvvD~-dg~pv~pG--E~G~L  388 (542)
T COG1021         323 RRVPAVLGCQLQQVFGMAEGL--VNYTRL---------DDPPEIIIHTQGRPLSPDDEVRVVDA-DGNPVAPG--EVGEL  388 (542)
T ss_pred             hhchhhhCchHHHHhhhhhhh--hccccc---------CCchHheeecCCCcCCCcceeEEecC-CCCCCCCC--Cccee
Confidence            9998 7899999999999953  333332         22334445788999999999999997 78888887  77999


Q ss_pred             EEcchhhhhhhcCCchhhHhhhc-cceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEE
Q 008535          408 MFRANTVMLGYFKNPKATEEAFR-NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVV  486 (562)
Q Consensus       408 ~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~  486 (562)
                      ..+||..++|||+.|+-+.+.|. +|||+|||+.++|+||++.+.||.+|+|+.+|+||-.+|||+.|+.||.|.++.++
T Consensus       389 ltRGPYTirGYyrap~HNa~aF~a~GFYrsGD~V~~~~dGyl~V~GR~KDQINRgGEKIAAeEvEn~LL~HP~V~~AAlV  468 (542)
T COG1021         389 LTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDAALV  468 (542)
T ss_pred             eecCCeeeeeeccCchhhhhccCcCCceecCceeEecCCceEEEEeeehhhhccccchhhHHHHHHHHhhCchhhhhhhh
Confidence            99999999999999999999995 99999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhcc-CCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhhc
Q 008535          487 GKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDE-LPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNATA  557 (562)
Q Consensus       487 ~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~-l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~~  557 (562)
                      ..+++..|++.+++++.++. .....++++++++. +..|++|++|.+++ +|.|+-|||+|+.|++.+....
T Consensus       469 ampDelLGEksCAfiv~~~~-~~~~~qlr~~L~~~GlAa~K~PDrie~v~~~P~T~VGKIdKk~Lr~~l~~~~  540 (542)
T COG1021         469 AMPDELLGEKSCAFIVVKEP-PLRAAQLRRFLRERGLAAFKLPDRIEFVDSLPLTAVGKIDKKALRRRLASRL  540 (542)
T ss_pred             cCchhhcCcceeEEEEecCC-CCCHHHHHHHHHHcchhhhcCCcceeecccCCCcccccccHHHHHHHhhhhc
Confidence            99999999999999998764 37888999999876 89999999999776 9999999999999998876543

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=1.1e-70  Score=578.75  Aligned_cols=521  Identities=25%  Similarity=0.327  Sum_probs=414.5

Q ss_pred             cCCCCCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhcc
Q 008535           15 ANNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAG   94 (562)
Q Consensus        15 ~~~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G   94 (562)
                      ++..+.|+.++|++.++.+|+++|+++.++++||+||.+++.++|+.|.+.|+++||+|+++++|+++++++++||+++|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la~~~~G   81 (563)
T PLN02860          2 ANHSQAHICQCLTRLATLRGNAVVTISGNRRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACAG   81 (563)
T ss_pred             cchhhhHHHHHHHHHHHhcCCceEEecCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHhhcc
Confidence            46677899999999999999999999988999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHh-hcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCC
Q 008535           95 AVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALD-ILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSG  173 (562)
Q Consensus        95 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (562)
                      ++++|+++.++.+++.++++.+++++++++............ .+..      ....+...+.....       ......
T Consensus        82 av~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~-------~~~~~~  148 (563)
T PLN02860         82 GIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPS------LMWQVFLESPSSSV-------FIFLNS  148 (563)
T ss_pred             EEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCc------eeEEEEecCccccc-------ccchhh
Confidence            999999999999999999999999999998765333322211 0100      11122222111000       000000


Q ss_pred             CCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhh
Q 008535          174 SLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGW  253 (562)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl  253 (562)
                      .....++...............++++++++|||||||.||||.++|+++..+.......+++.++|+++...|++|.+++
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~  228 (563)
T PLN02860        149 FLTTEMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGL  228 (563)
T ss_pred             ccccchhccCccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCEEEEecCchhhccH
Confidence            11111111110000011112356899999999999999999999999998877777777889999999999999999999


Q ss_pred             HHHHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhcccc--ccccccceEEEEEeCCCChHHHHHHH
Q 008535          254 CCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASAS--DQNQLQRKVIIVIAGVLPTIEVLEQV  331 (562)
Q Consensus       254 ~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~l~~l~~i~~~g~~l~~~~~~~~  331 (562)
                      ...+.++..|+++++.+.+++..+++.++++++|+++++|.++..|++....  ....++++|.+++||+++++++.+.+
T Consensus       229 ~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~  308 (563)
T PLN02860        229 SSALAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDA  308 (563)
T ss_pred             HHHHHHHHcCceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhccccccceeEEEeCCCcCCHHHHHHH
Confidence            8888899999999999899999999999999999999999999999876432  22457899999999999999999999


Q ss_pred             Hh-c-CCeeeccccCccccCcccccccCCCCCCCc------C-----CccccccccccCccccccccceecccCCccccc
Q 008535          332 AN-F-GFNIRHAYGMTEVLGPAIVRQWKPEGESSA------L-----DHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVP  398 (562)
Q Consensus       332 ~~-~-~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~------~-----~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~  398 (562)
                      ++ + +.++++.||+||+++.++............      .     ..........+|.|.++. .+++.+.+      
T Consensus       309 ~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~-~v~i~~~~------  381 (563)
T PLN02860        309 KKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHV-ELKIGLDE------  381 (563)
T ss_pred             HHhcCCCceecCCCccccCcccccccccccccccchhhhhhhcccccccccccCCcccCCccCCc-EEEEecCC------
Confidence            84 4 789999999999976554332211100000      0     000011123567777766 67776653      


Q ss_pred             CCCCceeEEEEcchhhhhhhcCCchhhHhhhc-cceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcC
Q 008535          399 HDGKTLGEVMFRANTVMLGYFKNPKATEEAFR-NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSN  477 (562)
Q Consensus       399 ~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~  477 (562)
                        .++.|||+++|+.++.||+++++.+...|. +|||+|||+|++|++|.+++.||.+|+||++|.+|+|.+||+++.++
T Consensus       382 --~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~  459 (563)
T PLN02860        382 --SSRVGRILTRGPHVMLGYWGQNSETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQH  459 (563)
T ss_pred             --CCceeEEEEecCcccccccCCccccchhccCCCeEEccceEEEcCCCCEEEeecccceeEECCEEccHHHHHHHHHhC
Confidence              236799999999999999999999888874 89999999999999999999999999999999999999999999999


Q ss_pred             CCceeEEEEeeeCCCCCceeEEEEEeCCCC--------------CCCHHHHHHHHhc-cCCCCCCCcEEEe-ec-ccCCC
Q 008535          478 PKVLEAAVVGKVDDQLKEVPVAFVKLKEGR--------------EASPEELVTFCGD-ELPSCMVPRAIFF-ED-IPVNS  540 (562)
Q Consensus       478 ~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~--------------~~~~~~l~~~~~~-~l~~~~~p~~i~~-~~-lP~t~  540 (562)
                      |+|.+++|++.+++..++.++++|++.++.              ....+++++++++ .+++|++|+.+++ .+ ||+|+
T Consensus       460 p~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~~~~~~~~lP~t~  539 (563)
T PLN02860        460 PGVASVVVVGVPDSRLTEMVVACVRLRDGWIWSDNEKENAKKNLTLSSETLRHHCREKNLSRFKIPKLFVQWRKPFPLTT  539 (563)
T ss_pred             CCcceeEEEEEecCcCCceEEEEEEECCccccccccchhhcccccccHHHHHHHHhhCcccccccceEEEEEecCCCCCc
Confidence            999999999999999999999999987652              2456789999987 5999999998764 44 99999


Q ss_pred             CCcchHHHHhhhhhhhc
Q 008535          541 TGKVQKFVLRGKVNATA  557 (562)
Q Consensus       541 ~GKv~r~~l~~~~~~~~  557 (562)
                      +||++|++|++++.+..
T Consensus       540 ~GKi~r~~L~~~~~~~~  556 (563)
T PLN02860        540 TGKIRRDEVRREVLSHL  556 (563)
T ss_pred             ccchhHHHHHHHHHHHH
Confidence            99999999999986543

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.5e-70  Score=583.03  Aligned_cols=516  Identities=20%  Similarity=0.278  Sum_probs=402.5

Q ss_pred             hHHHHHHHHHH--cCCceEEEEC------CeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhc
Q 008535           22 PIDFLERAAHV--YGDATSIIYG------TVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMA   93 (562)
Q Consensus        22 i~~~l~~~a~~--~p~~~a~~~~------~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~   93 (562)
                      ...+|+++++.  +|+++|+++.      .+++||+||.+++.++|+.|.+.|+++||+|+++++|++++++++|||+++
T Consensus        61 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~~~lA~~~~  140 (647)
T PTZ00237         61 CYNVLDIHVKNPLKRDQDALIYECPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARI  140 (647)
T ss_pred             HHHHHHHhhcccCCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHh
Confidence            34677777754  7999999873      357999999999999999999999999999999999999999999999999


Q ss_pred             cceEEecCCCCCHHHHHHHHhhCCceEEEEecc---------chHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcc
Q 008535           94 GAVLSALNTRLDSATLASILRQLEAKIIFVDYQ---------FVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTC  164 (562)
Q Consensus        94 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (562)
                      |++++|+++.++.+++.+++++++++++|+++.         ..+.+..+.......     ...++.+...........
T Consensus       141 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~vi~~~~~~~~~~~~~  215 (647)
T PTZ00237        141 GATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFK-----PSNVITLFRNDITSESDL  215 (647)
T ss_pred             CcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCC-----CCEEEEEEcCCccccccc
Confidence            999999999999999999999999999999752         222333332211100     122332211100000000


Q ss_pred             cc--cCCCCCCCCchhhhhhccc----CccccCCCCCCCCceEEEeccCCCCCCCceEeechh-HHHHHHHHHhhcCCCC
Q 008535          165 SV--ANNFPSGSLDYNDLLEMGK----ADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRG-AYLNSLAQISRCDVRD  237 (562)
Q Consensus       165 ~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~-l~~~~~~~~~~~~~~~  237 (562)
                      ..  ......+...|.+++....    .......+..++|+++|+|||||||.||||+++|.+ +..........+....
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~  295 (647)
T PTZ00237        216 KKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSIIEKDI  295 (647)
T ss_pred             ccccccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhcCCCC
Confidence            00  0000012244555543211    111112234678999999999999999999999998 4443333344556777


Q ss_pred             CCeeeeecccccchhhHHHHHhHhhceEEEEecc--CC----HHHHHHHHHhcCeEEEEcchHHHHHHHhcccc-----c
Q 008535          238 MPVFLWTLDMFRCNGWCCTWAMAAVGGINVCIRT--VS----AKIIFDSILIHKVTHLCGQPRILNMIANASAS-----D  306 (562)
Q Consensus       238 ~~~~l~~~pl~~~~gl~~~~~~~~~g~~~v~~~~--~~----~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~-----~  306 (562)
                      ++++++..|++|+.+...++.++..|+++++.+.  +.    +..+++.++++++|+++++|.+++.|++....     .
T Consensus       296 ~d~~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~  375 (647)
T PTZ00237        296 PTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIRS  375 (647)
T ss_pred             CcEEEEcCCCceEeeHHHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCcccccccc
Confidence            8999999999998877778888999999988753  22    67899999999999999999999999875321     2


Q ss_pred             cccccceEEEEEeCCCChHHHHHHHH-hcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCcccccccc
Q 008535          307 QNQLQRKVIIVIAGVLPTIEVLEQVA-NFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQG  385 (562)
Q Consensus       307 ~~~l~~l~~i~~~g~~l~~~~~~~~~-~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  385 (562)
                      ..+++++|.++++|+++++++.++++ .+++++++.||+||+++..+....           ........+|.|.++. .
T Consensus       376 ~~~l~~Lr~i~~~G~~l~~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~-----------~~~~~~~s~G~p~~g~-~  443 (647)
T PTZ00237        376 KYDLSNLKEIWCGGEVIEESIPEYIENKLKIKSSRGYGQTEIGITYLYCYG-----------HINIPYNATGVPSIFI-K  443 (647)
T ss_pred             ccCcchheEEEecCccCCHHHHHHHHHhcCCCEEeeechHHhChhhhccCC-----------CCCCCCCCCccCcCCc-e
Confidence            34688999999999999999999988 469999999999999865443210           0011124677777777 7


Q ss_pred             ceecccCCcccccCCCCceeEEEEcch---hhhhhhcCCchhhHhhhc--cceeeeCceeEEcCCCcEEEeccccceeec
Q 008535          386 VDVKQQNTMKSVPHDGKTLGEVMFRAN---TVMLGYFKNPKATEEAFR--NGWYHTGDLAVRNPDGYVQMKDRRKDIIIS  460 (562)
Q Consensus       386 ~~i~~~~~~~~~~~~~~~~Gel~v~~~---~~~~gy~~~~~~~~~~~~--~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~  460 (562)
                      ++|++. ++.+++.+  +.|||++++|   +++.|||++++.+...|.  +|||+|||+|++|++|.+++.||+||+||+
T Consensus       444 ~~i~d~-~g~~~~~g--e~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~~~~g~~~TGDlg~~d~dG~l~i~GR~dd~i~~  520 (647)
T PTZ00237        444 PSILSE-DGKELNVN--EIGEVAFKLPMPPSFATTFYKNDEKFKQLFSKFPGYYNSGDLGFKDENGYYTIVSRSDDQIKI  520 (647)
T ss_pred             EEEECC-CCCCCCCC--CceEEEEeccCCchhhCceeCCHHHHHHHHhCCCCEEECCcEEEECCCCeEEEEeccCCEEEE
Confidence            888886 77777765  6799999986   789999999999888775  799999999999999999999999999999


Q ss_pred             CCeEechHHHHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCC---CCCH----HHHHHHHhccCCCCCCCcEEEe
Q 008535          461 GAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGR---EASP----EELVTFCGDELPSCMVPRAIFF  533 (562)
Q Consensus       461 ~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~---~~~~----~~l~~~~~~~l~~~~~p~~i~~  533 (562)
                      +|++|+|.+||++|.+||.|.+++|++++++..++.++++|+++++.   ..+.    ++|+++++++++++++|+.|++
T Consensus       521 ~G~rI~p~eIE~~l~~~p~V~eaavvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~l~~~i~~~~~~~l~~~~~P~~i~~  600 (647)
T PTZ00237        521 SGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQDQSNQSIDLNKLKNEINNIITQDIESLAVLRKIII  600 (647)
T ss_pred             CCEEeCHHHHHHHHHhCCCceeeEEEeeEcCCCCCEEEEEEEeccCccccCCCHHHHHHHHHHHHHhhcCccccCcEEEE
Confidence            99999999999999999999999999999999999999999987432   2232    5677888999999999999887


Q ss_pred             ec-ccCCCCCcchHHHHhhhhhhhc
Q 008535          534 ED-IPVNSTGKVQKFVLRGKVNATA  557 (562)
Q Consensus       534 ~~-lP~t~~GKv~r~~l~~~~~~~~  557 (562)
                      ++ ||+|++||++|+.|++++++..
T Consensus       601 v~~lP~T~sGKi~R~~Lr~~~~~~~  625 (647)
T PTZ00237        601 VNQLPKTKTGKIPRQIISKFLNDSN  625 (647)
T ss_pred             cCCCCCCCCccEeHHHHHHHHcCCC
Confidence            65 9999999999999999987654

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=4.8e-70  Score=579.95  Aligned_cols=518  Identities=20%  Similarity=0.235  Sum_probs=410.1

Q ss_pred             CCCh-HHHHHHHHHHcCCceEEEE------CCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhh
Q 008535           19 PLTP-IDFLERAAHVYGDATSIIY------GTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVP   91 (562)
Q Consensus        19 ~~ti-~~~l~~~a~~~p~~~a~~~------~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~   91 (562)
                      ..|+ .++|+++++.+|+++|+++      .++++||+||.+++.++|+.|.+.|+++||+|+++++|+++++++++||+
T Consensus        50 ~~n~~~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA~~  129 (628)
T TIGR02316        50 RTNLCHNALDRHLDERGEQLALVTVSSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACA  129 (628)
T ss_pred             EeeHHHHHHHHHhCcCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence            3444 4678888888999999987      23689999999999999999999999999999999999999999999999


Q ss_pred             hccceEEecCCCCCHHHHHHHHhhCCceEEEEeccc---------hHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCC
Q 008535           92 MAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQF---------VEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPS  162 (562)
Q Consensus        92 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (562)
                      ++|++++|+++.++.+++.+++++++++++|+++..         .+.+..+.......     ...++.++.....   
T Consensus       130 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~vi~~~~~~~~---  201 (628)
T TIGR02316       130 RIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHP-----PPHVLLVDRGLAP---  201 (628)
T ss_pred             HhCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCC-----CCEEEEEeCCCCC---
Confidence            999999999999999999999999999999997643         22222222211110     2233333321100   


Q ss_pred             cccccCCCCCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHH-HHHHHhhcCCCCCCee
Q 008535          163 TCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLN-SLAQISRCDVRDMPVF  241 (562)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~-~~~~~~~~~~~~~~~~  241 (562)
                          ..........+.++...............++++++|+|||||||.||||+++|.++..+ .......++++++|++
T Consensus       202 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~  277 (628)
T TIGR02316       202 ----MRLIPGRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVM  277 (628)
T ss_pred             ----cCcccCccccHHHHhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCcEE
Confidence                00001112345554443221111112245689999999999999999999999997543 3445556788999999


Q ss_pred             eeecccccchhhH-HHHHhHhhceEEEEec----cCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccc--cccccccceE
Q 008535          242 LWTLDMFRCNGWC-CTWAMAAVGGINVCIR----TVSAKIIFDSILIHKVTHLCGQPRILNMIANASA--SDQNQLQRKV  314 (562)
Q Consensus       242 l~~~pl~~~~gl~-~~~~~~~~g~~~v~~~----~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~--~~~~~l~~l~  314 (562)
                      ++..|++|..++. .++.++..|+++++.+    .+++..+++.++++++|+++++|.+++.|.+...  ....+++++|
T Consensus       278 ~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr  357 (628)
T TIGR02316       278 FSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHDLSSLH  357 (628)
T ss_pred             EEcCCCCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCcccee
Confidence            9999999999865 5777888999988875    3578999999999999999999999999987643  2345688999


Q ss_pred             EEEEeCCCChHHHHHHHH-hcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCC
Q 008535          315 IIVIAGVLPTIEVLEQVA-NFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNT  393 (562)
Q Consensus       315 ~i~~~g~~l~~~~~~~~~-~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~  393 (562)
                      .+++||++++++..++++ .++..+++.||+||++..++......        .........+|.|.++. .++|++.++
T Consensus       358 ~~~~gGe~l~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~--------~~~~~~~gs~G~p~~g~-~v~i~d~~~  428 (628)
T TIGR02316       358 WLFLAGEPLDEPTAHWITDGLGKPVIDNYWQTETGWPVLAIMPGL--------DLKPVKLGSPGLPMYGY-HLRVLDEAT  428 (628)
T ss_pred             EEEEecCCCCHHHHHHHHHHhCCCEEecccccccCceeecCCCCC--------CcCCCCCCCcccCcCCc-eEEEEECCC
Confidence            999999999999999887 56889999999999985443321100        00111234567777777 778888767


Q ss_pred             cccccCCCCceeEEEEcch---hhhhhhcCCchhhHhhh----ccceeeeCceeEEcCCCcEEEeccccceeecCCeEec
Q 008535          394 MKSVPHDGKTLGEVMFRAN---TVMLGYFKNPKATEEAF----RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIIS  466 (562)
Q Consensus       394 ~~~~~~~~~~~Gel~v~~~---~~~~gy~~~~~~~~~~~----~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~  466 (562)
                      +++++.+  +.|||+++||   +.+.+|+++++.+.+.+    .++||+|||+|++|+||.++++||.||+||++|.+|+
T Consensus       429 g~~~~~g--~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~dG~l~i~GR~dd~ik~~G~rv~  506 (628)
T TIGR02316       429 GRPCGPN--EKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLG  506 (628)
T ss_pred             CCCCCCC--CcEEEEEecCCCccccccccCChHHHHHhhhhcCCCCEEECCceEEEcCCCcEEEEEcCcceEEeCCEEeC
Confidence            8888766  6799999998   57789999987776654    4679999999999999999999999999999999999


Q ss_pred             hHHHHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCCCC--------CHHHHHHHHhccCCCCCCCcEEEeec-cc
Q 008535          467 SLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREA--------SPEELVTFCGDELPSCMVPRAIFFED-IP  537 (562)
Q Consensus       467 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~--------~~~~l~~~~~~~l~~~~~p~~i~~~~-lP  537 (562)
                      |.+||++|.++|.|.+++|++++++..++.++++|++.++...        ..++|++++++++++|++|+.+++++ ||
T Consensus       507 ~~eIE~~l~~~p~V~ea~Vvg~~d~~~g~~~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~~L~~~~~P~~v~~v~~lP  586 (628)
T TIGR02316       507 TREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAILKESDSAGDAHDPHAVETGMMDCVVRQLGAVARPARVYFVAALP  586 (628)
T ss_pred             HHHHHHHHHhCCCcceEEEEeeecCCCCeEEEEEEEEcCCcccccccchHHHHHHHHHHHHHhcCCCcCCCEEEEcCCCC
Confidence            9999999999999999999999999999999999998765431        34689999999999999999988665 99


Q ss_pred             CCCCCcchHHHHhhhhhhhccc
Q 008535          538 VNSTGKVQKFVLRGKVNATAVG  559 (562)
Q Consensus       538 ~t~~GKv~r~~l~~~~~~~~~~  559 (562)
                      +|+|||++|+.|++++++...+
T Consensus       587 ~t~sGKi~r~~L~~~~~~~~~~  608 (628)
T TIGR02316       587 KTRSGKLLRRSIQALAEGRDPG  608 (628)
T ss_pred             CCCchHHHHHHHHHHHcCCCCC
Confidence            9999999999999998765533

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=1.2e-69  Score=578.18  Aligned_cols=519  Identities=20%  Similarity=0.228  Sum_probs=407.9

Q ss_pred             CCCCh-HHHHHHHHH-HcCCceEEEEC------CeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Q 008535           18 VPLTP-IDFLERAAH-VYGDATSIIYG------TVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFA   89 (562)
Q Consensus        18 ~~~ti-~~~l~~~a~-~~p~~~a~~~~------~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA   89 (562)
                      ...|+ ..+|+++++ .+|+++|+++.      .+++||+||.+++.++|+.|.+.|+++||+|++++||++++++++||
T Consensus        85 ~~~N~~~~~l~~~~~~~~~~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~lA  164 (666)
T PLN02654         85 GKTNICYNCLDRNVEAGNGDKIAIYWEGNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLA  164 (666)
T ss_pred             CEeeHHHHHHHHhhccCCCCCEEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            44566 467777775 48999999873      26899999999999999999999999999999999999999999999


Q ss_pred             hhhccceEEecCCCCCHHHHHHHHhhCCceEEEEeccchH---------HHHHHHhhcCCCCcCCCCCceeccCCCCCCC
Q 008535           90 VPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVE---------VVQNALDILSPNHKCDKAPLLVTIPECDHYQ  160 (562)
Q Consensus        90 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (562)
                      |+++|++++|+++.++.+++..++++++++++|++.....         .+...........  .....++........ 
T Consensus       165 ~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-  241 (666)
T PLN02654        165 CARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNG--VSVGICLTYENQLAM-  241 (666)
T ss_pred             HHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccC--CCccEEEEecccccc-
Confidence            9999999999999999999999999999999999876432         1222211110000  001111111111000 


Q ss_pred             CCcccccCCCCCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHH-HHHHHhhcCCCCCC
Q 008535          161 PSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLN-SLAQISRCDVRDMP  239 (562)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~-~~~~~~~~~~~~~~  239 (562)
                       .. ............|.++....+. ........++|+++|+|||||||.||||+++|++++.. .......++++++|
T Consensus       242 -~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~~~~~d  318 (666)
T PLN02654        242 -KR-EDTKWQEGRDVWWQDVVPNYPT-KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPTD  318 (666)
T ss_pred             -cc-cccccccCCcccHHHHhhcCCC-CCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcCCCCCc
Confidence             00 0000000111234444322211 11112246789999999999999999999999997543 34455678899999


Q ss_pred             eeeeecccccchhhHH-HHHhHhhceEEEEecc----CCHHHHHHHHHhcCeEEEEcchHHHHHHHhccc--cccccccc
Q 008535          240 VFLWTLDMFRCNGWCC-TWAMAAVGGINVCIRT----VSAKIIFDSILIHKVTHLCGQPRILNMIANASA--SDQNQLQR  312 (562)
Q Consensus       240 ~~l~~~pl~~~~gl~~-~~~~~~~g~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~--~~~~~l~~  312 (562)
                      ++++..|++|.+|... ++.+++.|+++++.+.    +++..+++.|+++++|+++++|.+++.|.+...  ....++++
T Consensus       319 ~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~  398 (666)
T PLN02654        319 VYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKS  398 (666)
T ss_pred             EEEEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccccccCChhh
Confidence            9999999999998754 6777889999988753    589999999999999999999999999988653  23456889


Q ss_pred             eEEEEEeCCCChHHHHHHHH-hcC---CeeeccccCccccCcccccccCCCCCCCcCCccccccccccCcccccccccee
Q 008535          313 KVIIVIAGVLPTIEVLEQVA-NFG---FNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDV  388 (562)
Q Consensus       313 l~~i~~~g~~l~~~~~~~~~-~~~---~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i  388 (562)
                      +|.++++|++++++..+++. .+|   +++.+.||+||+++..+....          ......+..+|.|.++. .++|
T Consensus       399 Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~TE~g~~~~~~~~----------~~~~~~~gs~G~p~~g~-~v~i  467 (666)
T PLN02654        399 LRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLP----------GAWPQKPGSATFPFFGV-QPVI  467 (666)
T ss_pred             eeEEEEecCCCCHHHHHHHHHHhCCCCCceeccccccccCCeeeccCC----------CCCCCCCCccCCCCCCc-eEEE
Confidence            99999999999999999887 556   689999999999876553211          00112335678888887 7888


Q ss_pred             cccCCcccccCCCCceeEEEEcc--hhhhhhhcCCchhhHhhh---ccceeeeCceeEEcCCCcEEEeccccceeecCCe
Q 008535          389 KQQNTMKSVPHDGKTLGEVMFRA--NTVMLGYFKNPKATEEAF---RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAE  463 (562)
Q Consensus       389 ~~~~~~~~~~~~~~~~Gel~v~~--~~~~~gy~~~~~~~~~~~---~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~  463 (562)
                      +|. ++++++.+  +.|||++++  |+++.|||++++.+...|   .+|||+|||+|++|+||.+++.||+||+||++|.
T Consensus       468 ~d~-~g~~~~~~--~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGD~~~~d~dG~l~i~GR~dd~I~~~G~  544 (666)
T PLN02654        468 VDE-KGKEIEGE--CSGYLCVKKSWPGAFRTLYGDHERYETTYFKPFAGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGH  544 (666)
T ss_pred             ECC-CCCCCCCC--CceEEEEcCCCchhhhhhcCChHHHHHhhhhcCCCEEEeCceEEECCCCcEEEeeeccCeEEeCCE
Confidence            875 56666544  679999999  789999999998887765   2799999999999999999999999999999999


Q ss_pred             EechHHHHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCCCCCH---HHHHHHHhccCCCCCCCcEEEeec-ccCC
Q 008535          464 IISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASP---EELVTFCGDELPSCMVPRAIFFED-IPVN  539 (562)
Q Consensus       464 ~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~~~---~~l~~~~~~~l~~~~~p~~i~~~~-lP~t  539 (562)
                      +|+|.+||++|.+||.|.+++|++++++..|+.++++|+++++...+.   ++|+++++++++.+++|+.+++++ ||+|
T Consensus       545 ri~p~EIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vvl~~~~~~~~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP~T  624 (666)
T PLN02654        545 RIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTLVEGVPYSEELRKSLILTVRNQIGAFAAPDKIHWAPGLPKT  624 (666)
T ss_pred             EECHHHHHHHHHhCCCeeeEEEEeeEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCCEEEECCCCCCC
Confidence            999999999999999999999999999999999999999988754433   478899999999999999988765 9999


Q ss_pred             CCCcchHHHHhhhhhhh
Q 008535          540 STGKVQKFVLRGKVNAT  556 (562)
Q Consensus       540 ~~GKv~r~~l~~~~~~~  556 (562)
                      ++||++|+.|++.+.++
T Consensus       625 ~sGKi~r~~l~~~~~~~  641 (666)
T PLN02654        625 RSGKIMRRILRKIASRQ  641 (666)
T ss_pred             CCcCchHHHHHHHHcCC
Confidence            99999999999998764

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=6.7e-69  Score=570.59  Aligned_cols=518  Identities=24%  Similarity=0.327  Sum_probs=412.3

Q ss_pred             CCCCChHHHHHHHHHHcCCceEEEE--------CCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Q 008535           17 NVPLTPIDFLERAAHVYGDATSIIY--------GTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHF   88 (562)
Q Consensus        17 ~~~~ti~~~l~~~a~~~p~~~a~~~--------~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~l   88 (562)
                      ..+.|+.++|++.++.+|+++|+.+        ..+++||+||.+++.++|+.|.+.|+++||+|+++++|++++++++|
T Consensus        22 ~~~~t~~~~l~~~a~~~p~~~Al~~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~l  101 (632)
T PRK07529         22 DLPASTYELLSRAAARHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALW  101 (632)
T ss_pred             cCCCCHHHHHHHHHHHCCCCceEEeecccCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            4567999999999999999999986        24689999999999999999999999999999999999999999999


Q ss_pred             HhhhccceEEecCCCCCHHHHHHHHhhCCceEEEEeccch-----HHHHHHHhhcCCCCcCCCCCceeccCCCCCC-CCC
Q 008535           89 AVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFV-----EVVQNALDILSPNHKCDKAPLLVTIPECDHY-QPS  162 (562)
Q Consensus        89 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  162 (562)
                      ||+++| +++|+++.++.+++.++++.+++++++++....     +.+.........      ...++.++..... .+.
T Consensus       102 A~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~  174 (632)
T PRK07529        102 GGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPE------LRTVVEVDLARYLPGPK  174 (632)
T ss_pred             HHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcCCc------ceeEEEecCcccccccc
Confidence            999999 579999999999999999999999999986542     223222222111      2333333322100 000


Q ss_pred             cccc---cCCCCCCCCchhhhhhcccCcc-ccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCC
Q 008535          163 TCSV---ANNFPSGSLDYNDLLEMGKADF-EMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDM  238 (562)
Q Consensus       163 ~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~  238 (562)
                      ....   ......+...+.+.+...+... .......++++++++|||||||.||+|.+||+++..+.......+.+.++
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~  254 (632)
T PRK07529        175 RLAVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPG  254 (632)
T ss_pred             cccccccccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhcCCCCC
Confidence            0000   0001123344555444433221 11223467899999999999999999999999998888777777888999


Q ss_pred             CeeeeecccccchhhH-HHHHhHhhceEEEEeccC---C---HHHHHHHHHhcCeEEEEcchHHHHHHHhcccccccccc
Q 008535          239 PVFLWTLDMFRCNGWC-CTWAMAAVGGINVCIRTV---S---AKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQ  311 (562)
Q Consensus       239 ~~~l~~~pl~~~~gl~-~~~~~~~~g~~~v~~~~~---~---~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~  311 (562)
                      +++++.+|++|.+++. .++.++..|+++++.++.   +   ...+++.++++++|++.++|.++..|++.... ..+++
T Consensus       255 d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-~~~~~  333 (632)
T PRK07529        255 DTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPVD-GHDIS  333 (632)
T ss_pred             CEEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccc-CCCcc
Confidence            9999999999999876 467778888888886531   1   36788999999999999999999999886532 24688


Q ss_pred             ceEEEEEeCCCChHHHHHHHH-hcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecc
Q 008535          312 RKVIIVIAGVLPTIEVLEQVA-NFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQ  390 (562)
Q Consensus       312 ~l~~i~~~g~~l~~~~~~~~~-~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~  390 (562)
                      ++|.+++||+++++++.+.|+ .+++++++.||+||++..+..+...           .......+|.+.+.. .++++.
T Consensus       334 slr~v~~gg~~l~~~l~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~-----------~~~~~~svG~~~p~~-~v~i~~  401 (632)
T PRK07529        334 SLRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTEATCVSSVNPPD-----------GERRIGSVGLRLPYQ-RVRVVI  401 (632)
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHhCCcEeeeecccccCcccccCCcc-----------ccccCCCcccccCCc-eEEEEE
Confidence            999999999999999999998 5699999999999997655433210           111234567777666 677753


Q ss_pred             cC-Cc---ccccCCCCceeEEEEcchhhhhhhcCCchhhHhhhccceeeeCceeEEcCCCcEEEeccccceeecCCeEec
Q 008535          391 QN-TM---KSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIIS  466 (562)
Q Consensus       391 ~~-~~---~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~  466 (562)
                      .+ ++   .+++.+  +.|||+|+|++++.||++++......+.+|||+|||+|++|+||.+++.||.||+||++|.+|+
T Consensus       402 ~d~~g~~~~~~~~g--~~Gel~v~gp~v~~GY~~~~~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~i~  479 (632)
T PRK07529        402 LDDAGRYLRDCAVD--EVGVLCIAGPNVFSGYLEAAHNKGLWLEDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNID  479 (632)
T ss_pred             cCCCCcccccCCCC--CceEEEEECCCccccccCCccccccccCCCceEcCcEEEEcCCceEEEEecccCEEEeCCEEEC
Confidence            32 33   455555  7799999999999999987654433336899999999999999999999999999999999999


Q ss_pred             hHHHHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCC-CCCCCcEEEeec-ccCCCCCcc
Q 008535          467 SLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELP-SCMVPRAIFFED-IPVNSTGKV  544 (562)
Q Consensus       467 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~-~~~~p~~i~~~~-lP~t~~GKv  544 (562)
                      |.+||+.|.++|.|.+++|++.+++..++.++++|++.++...+.++++++++++++ .+++|+.+.+.+ ||+|++||+
T Consensus       480 p~eIE~~l~~~p~V~~a~vvg~~d~~~ge~~~a~v~l~~~~~~~~~~l~~~~~~~l~~~~~~P~~i~~v~~lP~t~~GKi  559 (632)
T PRK07529        480 PAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGASATEAELLAFARDHIAERAAVPKHVRILDALPKTAVGKI  559 (632)
T ss_pred             HHHHHHHHHhCCCeeEEEEEeccCCCCCceeEEEEEEcCCCCCCHHHHHHHHHHhcchhccCCcEEEEecCCCCCCCCcc
Confidence            999999999999999999999999999999999999998877888999999999986 579999988655 999999999


Q ss_pred             hHHHHhhhhhhh
Q 008535          545 QKFVLRGKVNAT  556 (562)
Q Consensus       545 ~r~~l~~~~~~~  556 (562)
                      +|++|++.+..+
T Consensus       560 ~r~~Lr~~~~~~  571 (632)
T PRK07529        560 FKPALRRDAIRR  571 (632)
T ss_pred             cHHHHHHHHHHH
Confidence            999999887654

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=2e-68  Score=568.62  Aligned_cols=507  Identities=24%  Similarity=0.306  Sum_probs=407.0

Q ss_pred             HHHHHHHHHHcCCceEEEECC------eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccce
Q 008535           23 IDFLERAAHVYGDATSIIYGT------VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAV   96 (562)
Q Consensus        23 ~~~l~~~a~~~p~~~a~~~~~------~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~   96 (562)
                      ..+|+++++.+|+++|+++.+      +++||+||.+++.++|+.|.++|+++||+|+++++|+++++++++||+++|++
T Consensus        60 ~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav  139 (625)
T TIGR02188        60 YNCVDRHLEARPDKVAIIWEGDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGAI  139 (625)
T ss_pred             HHHHHHhhccCCCCeEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCE
Confidence            467778888899999998643      47999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHhhCCceEEEEeccch---------HHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCccccc
Q 008535           97 LSALNTRLDSATLASILRQLEAKIIFVDYQFV---------EVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVA  167 (562)
Q Consensus        97 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (562)
                      ++|+++.++.+++.++++.++++++|+++...         ..+.......+..     ...++.+.......       
T Consensus       140 ~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-------  207 (625)
T TIGR02188       140 HSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVS-----VEHVLVVRRTGNPV-------  207 (625)
T ss_pred             EeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCCC-----ccEEEEEcCCCCCc-------
Confidence            99999999999999999999999999987532         2233332222100     22233332111000       


Q ss_pred             CCCCCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHH-HHhhcCCCCCCeeeeecc
Q 008535          168 NNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLA-QISRCDVRDMPVFLWTLD  246 (562)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~-~~~~~~~~~~~~~l~~~p  246 (562)
                      .........+.++....... .......++++++|+|||||||.||||+++|+++..+... ....+++.++|++++..|
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  286 (625)
T TIGR02188       208 PWVEGRDVWWHDLMAKASAY-CEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTAD  286 (625)
T ss_pred             CccccccccHHHHHhhcCCC-CCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCCCCCcEEEECCC
Confidence            00001123344544432221 1122356789999999999999999999999997655433 444568889999999999


Q ss_pred             cccchhhH-HHHHhHhhceEEEEecc----CCHHHHHHHHHhcCeEEEEcchHHHHHHHhcccc--ccccccceEEEEEe
Q 008535          247 MFRCNGWC-CTWAMAAVGGINVCIRT----VSAKIIFDSILIHKVTHLCGQPRILNMIANASAS--DQNQLQRKVIIVIA  319 (562)
Q Consensus       247 l~~~~gl~-~~~~~~~~g~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~l~~l~~i~~~  319 (562)
                      ++|..+.. .++.++..|+++++.+.    +++..+++.++++++|+++++|.+++.|.+....  ...+++++|.++++
T Consensus       287 ~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~  366 (625)
T TIGR02188       287 VGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHDLSSLRLLGSV  366 (625)
T ss_pred             chhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEe
Confidence            99998865 46777889999888752    4799999999999999999999999999886532  23468899999999


Q ss_pred             CCCChHHHHHHHHh-cC---CeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcc
Q 008535          320 GVLPTIEVLEQVAN-FG---FNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMK  395 (562)
Q Consensus       320 g~~l~~~~~~~~~~-~~---~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~  395 (562)
                      |++++++..+++.+ ++   +++++.||+||+++.++.....          .....+..+|.|.++. .+++++. +++
T Consensus       367 G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~----------~~~~~~~~~G~p~~g~-~~~i~d~-~g~  434 (625)
T TIGR02188       367 GEPINPEAWMWYYKVVGKERCPIVDTWWQTETGGIMITPLPG----------ATPTKPGSATLPFFGI-EPAVVDE-EGN  434 (625)
T ss_pred             cCCCCHHHHHHHHHHcCCCCCceEecccccccCCceeecCCC----------CCCcCCCcccCCcCCc-eEEEECC-CCC
Confidence            99999999998874 43   7899999999998765432211          0112234678888877 8888884 677


Q ss_pred             ccc-CCCCceeEEEEcc--hhhhhhhcCCchhhHhhh---ccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHH
Q 008535          396 SVP-HDGKTLGEVMFRA--NTVMLGYFKNPKATEEAF---RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLE  469 (562)
Q Consensus       396 ~~~-~~~~~~Gel~v~~--~~~~~gy~~~~~~~~~~~---~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~  469 (562)
                      +++ .+  +.|||+|+|  |+++.|||++++.+...+   .+|||+|||+|++|+||.+++.||+||+||++|++|+|.+
T Consensus       435 ~~~~~g--~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~e  512 (625)
T TIGR02188       435 PVEGPG--EGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPGYYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAE  512 (625)
T ss_pred             CCCCCC--CeEEEEEccCCCcccccccCChHHHHHHHhccCCCEEECCceEEEcCCCcEEEEecccCEEEeCCEEECHHH
Confidence            776 44  679999999  589999999998777765   3789999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCCCCC---HHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcch
Q 008535          470 VEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREAS---PEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQ  545 (562)
Q Consensus       470 iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~  545 (562)
                      ||++|.++|.|.+++|++.+++..++.++++|++.++...+   .++++++++++++.+++|+.|.+++ ||+|++||++
T Consensus       513 IE~~l~~~p~V~e~~vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~sGKi~  592 (625)
T TIGR02188       513 IESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLKDGYEPDDELRKELRKHVRKEIGPIAKPDKIRFVPGLPKTRSGKIM  592 (625)
T ss_pred             HHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHhhcCCCccCcEEEECCCCCCCCCccch
Confidence            99999999999999999999999999999999998775543   3689999999999999999988655 9999999999


Q ss_pred             HHHHhhhhhhh
Q 008535          546 KFVLRGKVNAT  556 (562)
Q Consensus       546 r~~l~~~~~~~  556 (562)
                      |+.|++++++.
T Consensus       593 r~~l~~~~~~~  603 (625)
T TIGR02188       593 RRLLRKIAAGE  603 (625)
T ss_pred             HHHHHHHHcCC
Confidence            99999998765

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PLN02479 acetate-CoA ligase

Probab=100.00  E-value=2.4e-68  Score=561.40  Aligned_cols=551  Identities=46%  Similarity=0.788  Sum_probs=435.1

Q ss_pred             CcccccCccccccccCCCCCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCc
Q 008535            1 MAMECLGGRLCSASANNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNI   80 (562)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~   80 (562)
                      |+-+..-++..+.++++.+.|+...+++.++.+|+++|+.+.+.++||+||.+++.++|..|.+.|+++||+|+++++|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~   80 (567)
T PLN02479          1 MAKERDIDDLPKNAANYTALTPLWFLERAAVVHPTRKSVVHGSVRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNI   80 (567)
T ss_pred             CccccccccccCccccccccCHHHHHHHHHhhCCCceEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCc
Confidence            45566677777878888888999999999999999999999889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhccceEEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCC-cCCCCCceeccCCCCCC
Q 008535           81 PALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNH-KCDKAPLLVTIPECDHY  159 (562)
Q Consensus        81 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  159 (562)
                      ++++++++||+++|++++|+++..+.+++.++++.++++++++++...+........+.... .....+.++.++.....
T Consensus        81 ~~~~~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (567)
T PLN02479         81 PAMYEAHFGVPMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCD  160 (567)
T ss_pred             HHHHHHHHHHHhCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCC
Confidence            99999999999999999999999999999999999999999999887665554433221100 00001223333221110


Q ss_pred             CCCcccccCCCCCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCC
Q 008535          160 QPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMP  239 (562)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~  239 (562)
                      . ...  ......+...+.+++...........+...+++++++|||||||.||||.+||+++..........+++..++
T Consensus       161 ~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~  237 (567)
T PLN02479        161 P-KSL--QYALGKGAIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGA  237 (567)
T ss_pred             c-ccc--ccccccCcccHHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcCCCCCC
Confidence            0 000  0001123344555554332211111122345788899999999999999999999877766666677888999


Q ss_pred             eeeeecccccchhhHHHHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhcccccc-ccccceEEEEE
Q 008535          240 VFLWTLDMFRCNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQ-NQLQRKVIIVI  318 (562)
Q Consensus       240 ~~l~~~pl~~~~gl~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~-~~l~~l~~i~~  318 (562)
                      ++++..|++|.+++...+.....++..+.+..+++..+++.++++++|++.++|.+++.|........ ..+++++.+++
T Consensus       238 ~~~~~~p~~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~~~~  317 (567)
T PLN02479        238 VYLWTLPMFHCNGWCFTWTLAALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETILPLPRVVHVMT  317 (567)
T ss_pred             EEEEecchhhhhhHHHHHHHHhhcCceEeccCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhcccccccceeEEEE
Confidence            99999999999998766665556666666778899999999999999999999999999987654332 25788999999


Q ss_pred             eCCCChHHHHHHHHhcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCccccc
Q 008535          319 AGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVP  398 (562)
Q Consensus       319 ~g~~l~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~  398 (562)
                      +|+++++++.+.|++.+.++++.||+||+++.++.+.........+ ...........|.+.++...+++++.+++.+++
T Consensus       318 ~G~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~  396 (567)
T PLN02479        318 AGAAPPPSVLFAMSEKGFRVTHTYGLSETYGPSTVCAWKPEWDSLP-PEEQARLNARQGVRYIGLEGLDVVDTKTMKPVP  396 (567)
T ss_pred             cCCCCCHHHHHHHHhcCCceecccccccccccccceeccccccccC-cccccccccccCCCcCCcCceeEEcCCCCcccC
Confidence            9999999999999877899999999999976544332211111000 000011112345555555457788766777777


Q ss_pred             CCCCceeEEEEcchhhhhhhcCCchhhHhhhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCC
Q 008535          399 HDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNP  478 (562)
Q Consensus       399 ~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~  478 (562)
                      .++++.|||+++|++++.||+++++.+...|.+|||+|||+|++|++|.+++.||.+|+|+.+|.+|+|.+||.+|.++|
T Consensus       397 ~~g~~~GEl~v~g~~~~~GY~~~~~~t~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~  476 (567)
T PLN02479        397 ADGKTMGEIVMRGNMVMKGYLKNPKANEEAFANGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHP  476 (567)
T ss_pred             CCCCCceEEEEeccchhhhhhcCcccccchhcCCceecceeEEEcCCccEEEeccccceEEeCCEEEcHHHHHHHHHhCc
Confidence            66556799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeEEEEeeeCCCCCceeEEEEEeCCCCC-----CCHHHHHHHHhccCCCCCCCcEEEeecccCCCCCcchHHHHhhhh
Q 008535          479 KVLEAAVVGKVDDQLKEVPVAFVKLKEGRE-----ASPEELVTFCGDELPSCMVPRAIFFEDIPVNSTGKVQKFVLRGKV  553 (562)
Q Consensus       479 ~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~-----~~~~~l~~~~~~~l~~~~~p~~i~~~~lP~t~~GKv~r~~l~~~~  553 (562)
                      .|.+++|++.+++..++.+++++++.++..     ...+++.++++++++.|+.|+.+.+.+||+|++||++|+.|++.+
T Consensus       477 ~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~~~iP~t~~gKv~r~~L~~~~  556 (567)
T PLN02479        477 AVLEASVVARPDERWGESPCAFVTLKPGVDKSDEAALAEDIMKFCRERLPAYWVPKSVVFGPLPKTATGKIQKHVLRAKA  556 (567)
T ss_pred             ccceeeEEeccchhcCceeEEEEEecCcccccchhhhHHHHHHHHHhhcccccCCceEEeccCCCCCccCeeHHHHHHHH
Confidence            999999999988888889999998876532     235789999999999999999998888999999999999999886


Q ss_pred             hh
Q 008535          554 NA  555 (562)
Q Consensus       554 ~~  555 (562)
                      ..
T Consensus       557 ~~  558 (567)
T PLN02479        557 KE  558 (567)
T ss_pred             Hh
Confidence            65

>PRK08162 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.7e-68  Score=557.55  Aligned_cols=533  Identities=50%  Similarity=0.848  Sum_probs=433.3

Q ss_pred             ccccCCCCCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhh
Q 008535           12 SASANNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVP   91 (562)
Q Consensus        12 ~~~~~~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~   91 (562)
                      +++.+..++++.++|++.++.+|+++|+.+.+..+||+||.+++.++|..|.+.|+++||+|+++++|+++++++++||+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~   89 (545)
T PRK08162         10 RNAANYVPLTPLSFLERAAEVYPDRPAVIHGDRRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVP   89 (545)
T ss_pred             ccccccccCCHHHHHHHHHHHCCCCeEEEECCeEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHH
Confidence            34555667899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccceEEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCC
Q 008535           92 MAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFP  171 (562)
Q Consensus        92 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (562)
                      ++|++++|+++..+.+++..+++.++++.++++.+..+.+.........       ...+.++.....      ......
T Consensus        90 ~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~------~~~~~~  156 (545)
T PRK08162         90 MAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPG-------PKPLVIDVDDPE------YPGGRF  156 (545)
T ss_pred             HhCcEEeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhCCC-------CceEEEecCccc------cccCCC
Confidence            9999999999999999999999999999999999887766554432221       111112111100      000111


Q ss_pred             CCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccch
Q 008535          172 SGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCN  251 (562)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~  251 (562)
                      .+..++..+............+.+.+++++++|||||||.||||+++|+++...+......+.+..++++++.+|++|.+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~  236 (545)
T PRK08162        157 IGALDYEAFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPMFHCN  236 (545)
T ss_pred             cccccHHHHhccCCccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeeEeccCcHhhh
Confidence            12334555544332222222234456899999999999999999999999877777666677888889999999999999


Q ss_pred             hhHHHHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHH
Q 008535          252 GWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQV  331 (562)
Q Consensus       252 gl~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~  331 (562)
                      ++...+...+.+++.++...+++..+++.++++++|++.++|.+++.|++........+.+.+.++++|+.++++..+.+
T Consensus       237 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  316 (545)
T PRK08162        237 GWCFPWTVAARAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRAGIDHPVHAMVAGAAPPAAVIAKM  316 (545)
T ss_pred             hHHHHHHHHHHccEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCccccccCCccceEEEECCCCCCHHHHHHH
Confidence            98877666778888888888999999999999999999999999999988755444455567778899999999999998


Q ss_pred             HhcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcc
Q 008535          332 ANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRA  411 (562)
Q Consensus       332 ~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~  411 (562)
                      ++++.++++.||+||+++.+..+.......... ...........|.+.+....+++++.+.+.+++.++++.|||+++|
T Consensus       317 ~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g  395 (545)
T PRK08162        317 EEIGFDLTHVYGLTETYGPATVCAWQPEWDALP-LDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRG  395 (545)
T ss_pred             HHhCCceeecccccccCcceeecccccccccCC-ccchhhccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEEEec
Confidence            878999999999999976665543222111111 0011111233454444443567777667777776555679999999


Q ss_pred             hhhhhhhcCCchhhHhhhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCC
Q 008535          412 NTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDD  491 (562)
Q Consensus       412 ~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~  491 (562)
                      +.++.||+++++.+...|.+|||+|||+|++|++|.+++.||.+|+|+++|.+++|.+||..|.++|+|.+++|++.+++
T Consensus       396 ~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~d~dg~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~  475 (545)
T PRK08162        396 NIVMKGYLKNPKATEEAFAGGWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPDP  475 (545)
T ss_pred             CcchhhhcCChhhhHHHhhCCCcccCceEEEcCCccEEEEecccceEEeCCEEECHHHHHHHHHhCCcccEEEEEeeecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeecccCCCCCcchHHHHhhhhhhhcc
Q 008535          492 QLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFEDIPVNSTGKVQKFVLRGKVNATAV  558 (562)
Q Consensus       492 ~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~lP~t~~GKv~r~~l~~~~~~~~~  558 (562)
                      ..++.+++++++.++...+.+++++++++.++.+++|..+.+.+||+|++||++|+.|++.+.+.+.
T Consensus       476 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~~~iP~t~~gK~~r~~l~~~~~~l~~  542 (545)
T PRK08162        476 KWGEVPCAFVELKDGASATEEEIIAHCREHLAGFKVPKAVVFGELPKTSTGKIQKFVLREQAKSLKA  542 (545)
T ss_pred             ccCceEEEEEEeCCCCCCCHHHHHHHHHHhcccccCCcEEEecccCCCCCcCCcHHHHHHHHhhhhh
Confidence            8888999999988776677889999999999999999999888899999999999999999877653

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=2.9e-69  Score=575.85  Aligned_cols=515  Identities=22%  Similarity=0.254  Sum_probs=401.7

Q ss_pred             CCCCChHHHHHHHHHHcCCceEEEE----CC-----eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHH
Q 008535           17 NVPLTPIDFLERAAHVYGDATSIIY----GT-----VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLH   87 (562)
Q Consensus        17 ~~~~ti~~~l~~~a~~~p~~~a~~~----~~-----~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~   87 (562)
                      ....|+.++|+++++.+|+++|+..    .+     +.+||+||.+++.++|++|.+.|+++||+|+++++|+++|++++
T Consensus        41 ~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~  120 (651)
T PLN02736         41 PEIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVD  120 (651)
T ss_pred             CCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHH
Confidence            3446899999999999999999842    11     45999999999999999999999999999999999999999999


Q ss_pred             HHhhhccceEEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCccccc
Q 008535           88 FAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVA  167 (562)
Q Consensus        88 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (562)
                      +||+++|++++|+++.++.+++.++++.++++++|++.+..+.+......++.      ...++.++......+.   ..
T Consensus       121 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~------l~~ii~~~~~~~~~~~---~~  191 (651)
T PLN02736        121 HACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSEIPS------VRLIVVVGGADEPLPS---LP  191 (651)
T ss_pred             HHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHhhcCCC------ceEEEEECCCchhhhh---hh
Confidence            99999999999999999999999999999999999997766555444332211      2334433221100000   00


Q ss_pred             CCCCCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeeccc
Q 008535          168 NNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDM  247 (562)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl  247 (562)
                      ........++.++.+..........+..++|+++|+|||||||.||||++||+++..+.......+++.+.|++++.+|+
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~~~~~~d~~l~~lPl  271 (651)
T PLN02736        192 SGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSDVHISYLPL  271 (651)
T ss_pred             ccCCcEEEEHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhccCCCCCCEEEEeCCH
Confidence            00001124455555433222111223467899999999999999999999999999988888888889999999999999


Q ss_pred             ccchhhHHHHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccc---------------------
Q 008535          248 FRCNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASD---------------------  306 (562)
Q Consensus       248 ~~~~gl~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~---------------------  306 (562)
                      +|.+++...+.++..|+++++.+ .++..+++.++++++|+++++|.+++.|.+.....                     
T Consensus       272 ~h~~~~~~~~~~l~~G~~i~~~~-~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (651)
T PLN02736        272 AHIYERVNQIVMLHYGVAVGFYQ-GDNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQ  350 (651)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEeC-CCHHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            99999988888888898887765 48889999999999999999999998886532100                     


Q ss_pred             --------------------cccc-cceEEEEEeCCCChHHHHHHHH-hcCCeeeccccCccccCcccccccCCCCCCCc
Q 008535          307 --------------------QNQL-QRKVIIVIAGVLPTIEVLEQVA-NFGFNIRHAYGMTEVLGPAIVRQWKPEGESSA  364 (562)
Q Consensus       307 --------------------~~~l-~~l~~i~~~g~~l~~~~~~~~~-~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~  364 (562)
                                          ...+ +++|.+++||+++++++.+.++ .+++++++.||+||+++.++....        
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~--------  422 (651)
T PLN02736        351 ALENGKNPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRVLEGYGMTETSCVISGMDE--------  422 (651)
T ss_pred             HHHcCCCCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhCCCeEEEechHHhchheeccCC--------
Confidence                                0011 4799999999999999999998 568999999999999765543321        


Q ss_pred             CCccccccccccCccccccccceecccCCcccccC-CCCceeEEEEcchhhhhhhcCCchhhHhhhc-cceeeeCceeEE
Q 008535          365 LDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPH-DGKTLGEVMFRANTVMLGYFKNPKATEEAFR-NGWYHTGDLAVR  442 (562)
Q Consensus       365 ~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~-~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TGD~~~~  442 (562)
                          .......+|.|.++. .++|++.+++..... ...+.|||+|+||+++.|||++++.+.+.|. +|||+|||+|++
T Consensus       423 ----~~~~~~~vG~p~pg~-~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~~~dgw~~TGDlg~~  497 (651)
T PLN02736        423 ----GDNLSGHVGSPNPAC-EVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIGLW  497 (651)
T ss_pred             ----CCCCCCccCCccCce-EEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhhccCCCeeccceEEE
Confidence                011234678888777 788887433221111 1113599999999999999999999999984 899999999999


Q ss_pred             cCCCcEEEeccccceeec-CCeEechHHHHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCC--------CCCHHH
Q 008535          443 NPDGYVQMKDRRKDIIIS-GAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGR--------EASPEE  513 (562)
Q Consensus       443 ~~~g~l~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~--------~~~~~~  513 (562)
                      |+||.++|.||.+|+||+ +|++|+|.+||++|.++|.|.+|+|++.   ..++.++++|++++..        ..+..+
T Consensus       498 d~dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~---~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~  574 (651)
T PLN02736        498 LPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGD---SLNSSLVAVVVVDPEVLKAWAASEGIKYED  574 (651)
T ss_pred             cCCCcEEEEEechhheEcCCCcEechHHHHHHHhcCCCeeEEEEEec---CCCceeEEEEEeCHHHHHHHHHHcCCCccC
Confidence            999999999999999995 7999999999999999999999999983   3467899999986531        122223


Q ss_pred             HHHHHh------------------ccCCCCCCCcEEEeec-cc------CCCCCcchHHHHhhhhhhhc
Q 008535          514 LVTFCG------------------DELPSCMVPRAIFFED-IP------VNSTGKVQKFVLRGKVNATA  557 (562)
Q Consensus       514 l~~~~~------------------~~l~~~~~p~~i~~~~-lP------~t~~GKv~r~~l~~~~~~~~  557 (562)
                      +.++++                  ..|+.|++|+.+.+.+ .|      +|++||++|+.+++.|.++-
T Consensus       575 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lT~~~Ki~R~~i~~~~~~~i  643 (651)
T PLN02736        575 LKQLCNDPRVRAAVLADMDAVGREAQLRGFEFAKAVTLVPEPFTVENGLLTPTFKVKRPQAKAYFAKAI  643 (651)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHhcCCCcceeeeEEEEeCCCCcCCCCcCChhhhhhHHHHHHHHHHHH
Confidence            333332                  2599999999998766 43      89999999999999987653

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.4e-68  Score=553.55  Aligned_cols=490  Identities=26%  Similarity=0.403  Sum_probs=417.7

Q ss_pred             ChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEEe
Q 008535           21 TPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQ-LKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSA   99 (562)
Q Consensus        21 ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~-~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~   99 (562)
                      .+.+.|++.++.+|+++|+.++++.+||+||+++++++|+.|.+ .|+++||+|+++++|+++++++++||+++|++++|
T Consensus         3 ~~~~~~~~~a~~~p~~~a~~~~~~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~   82 (496)
T PRK06839          3 GIAYWIEKRAYLHPDRIAIITEEEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVP   82 (496)
T ss_pred             cHHHHHHHHHHHCCCCeEEEECCceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEe
Confidence            57899999999999999999999999999999999999999985 79999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCchhh
Q 008535          100 LNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYND  179 (562)
Q Consensus       100 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (562)
                      +++..+.+++..+++.+++++++++....+.+........       ...++.+.+                     +.+
T Consensus        83 ~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-------~~~~~~~~~---------------------~~~  134 (496)
T PRK06839         83 LNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSY-------VQRVISITS---------------------LKE  134 (496)
T ss_pred             cCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhccC-------cceEEEecc---------------------hHh
Confidence            9999999999999999999999999876655544322111       112222211                     111


Q ss_pred             hhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHH-HHH
Q 008535          180 LLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCC-TWA  258 (562)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~-~~~  258 (562)
                      .......   ...+..++++++++|||||||.||+|.++|.++..+.......+++..+|++++.+|++|.+|+.. .+.
T Consensus       135 ~~~~~~~---~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~  211 (496)
T PRK06839        135 IEDRKID---NFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFP  211 (496)
T ss_pred             hhccCCC---CCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHcCCCCCCeEEEeeCCcchhhHHHHHHH
Confidence            1111111   111244578999999999999999999999999887777777788899999999999999999865 456


Q ss_pred             hHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHHhcCCee
Q 008535          259 MAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVANFGFNI  338 (562)
Q Consensus       259 ~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~~~~~~l  338 (562)
                      ++..|+++++.+.+++..+++.++++++|++.++|.+++.|+........+++++|.+++||++++++..+.+++.++++
T Consensus       212 ~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~g~~~  291 (496)
T PRK06839        212 TLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFETTNLQSVRWFYNGGAPCPEELMREFIDRGFLF  291 (496)
T ss_pred             HHhcCcEEEEccCCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccccCCCcccceEEECCCCCCHHHHHHHHHhCCee
Confidence            77788888888889999999999999999999999999999988766667789999999999999999999998779999


Q ss_pred             eccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhhhhhh
Q 008535          339 RHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGY  418 (562)
Q Consensus       339 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy  418 (562)
                      .+.||+||++..++.....          ........+|.|.++. .++|++. .+..++.|  +.|||+|+|+.++.||
T Consensus       292 ~~~YG~tE~~~~~~~~~~~----------~~~~~~~~~G~p~~~~-~~~i~d~-~~~~~~~g--~~Gel~v~~~~~~~gy  357 (496)
T PRK06839        292 GQGFGMTETSPTVFMLSEE----------DARRKVGSIGKPVLFC-DYELIDE-NKNKVEVG--EVGELLIRGPNVMKEY  357 (496)
T ss_pred             EeeccCCCCCcceEecccc----------cccccCCCCcccCCCc-eEEEECC-CcCCCCCC--CceEEEEECCCcchhh
Confidence            9999999998654432111          0111234567777776 7888886 44556655  6799999999999999


Q ss_pred             cCCchhhHhhhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCCCCCceeE
Q 008535          419 FKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPV  498 (562)
Q Consensus       419 ~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v  498 (562)
                      +++++.+...+.+|||+|||++++|++|.+++.||.+|+|+.+|.+|+|.+||+.|.++|+|.+++|++.+++..++.++
T Consensus       358 ~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~  437 (496)
T PRK06839        358 WNRPDATEETIQDGWLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPI  437 (496)
T ss_pred             cCChHHHHHHHcCCCeeecceEEEcCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEE
Confidence            99999999889999999999999999999999999999999999999999999999999999999999999999899999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEee-cccCCCCCcchHHHHhhhhhh
Q 008535          499 AFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFE-DIPVNSTGKVQKFVLRGKVNA  555 (562)
Q Consensus       499 ~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~-~lP~t~~GKv~r~~l~~~~~~  555 (562)
                      ++|++.++...+.+++++++++.++.+++|..+.++ ++|+|.+||++|++|+++.++
T Consensus       438 ~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~v~~~P~t~~GKi~r~~l~~~~~~  495 (496)
T PRK06839        438 AFIVKKSSSVLIEKDVIEHCRLFLAKYKIPKEIVFLKELPKNATGKIQKAQLVNQLKS  495 (496)
T ss_pred             EEEEECCCCCCCHHHHHHHHHhhCcCCCCCcEEEEeccCCCCccccccHHHHHHHhhc
Confidence            999998877778899999999999999999998865 499999999999999987764

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=7.6e-68  Score=555.91  Aligned_cols=507  Identities=25%  Similarity=0.349  Sum_probs=420.7

Q ss_pred             cccCCCCCChHHHHHHHHHHcCCceEEEECC------eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHH
Q 008535           13 ASANNVPLTPIDFLERAAHVYGDATSIIYGT------VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKL   86 (562)
Q Consensus        13 ~~~~~~~~ti~~~l~~~a~~~p~~~a~~~~~------~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~   86 (562)
                      ..-.++..++.++|++.++.+|+++|+.+.+      +++||.||.++++++|++|.+.|+++||+|+++++|+++++++
T Consensus        17 ~~~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~   96 (547)
T PRK13295         17 AAGHWHDRTINDDLDACVASCPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVL   96 (547)
T ss_pred             cCCCCcCCCHHHHHHHHHHHCCCceEEEecCCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHH
Confidence            4556677799999999999999999999865      7899999999999999999999999999999999999999999


Q ss_pred             HHHhhhccceEEecCCCCCHHHHHHHHhhCCceEEEEeccch-----HHHHHHHhhcCCCCcCCCCCceeccCCCCCCCC
Q 008535           87 HFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFV-----EVVQNALDILSPNHKCDKAPLLVTIPECDHYQP  161 (562)
Q Consensus        87 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (562)
                      ++||+++|++++|++|.++.+++.++++.++++++++++...     +.+........      ....++.++...    
T Consensus        97 ~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~----  166 (547)
T PRK13295         97 YLACSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELP------ALRHVVVVGGDG----  166 (547)
T ss_pred             HHHHHhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCC------CcceEEEecCCC----
Confidence            999999999999999999999999999999999999987642     11222111111      012222222111    


Q ss_pred             CcccccCCCCCCCCchhhhhhcc------cCc-cccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcC
Q 008535          162 STCSVANNFPSGSLDYNDLLEMG------KAD-FEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCD  234 (562)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~  234 (562)
                                  ..++.++....      ... ........++++++++|||||||.||+|.++|+++..+.......++
T Consensus       167 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~  234 (547)
T PRK13295        167 ------------ADSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLG  234 (547)
T ss_pred             ------------ccCHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhC
Confidence                        11222222111      000 00111235689999999999999999999999999988888888888


Q ss_pred             CCCCCeeeeecccccchhhH-HHHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccce
Q 008535          235 VRDMPVFLWTLDMFRCNGWC-CTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRK  313 (562)
Q Consensus       235 ~~~~~~~l~~~pl~~~~gl~-~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l  313 (562)
                      +.+++++++..|++|.+++. .++.++..|+++++.+..++..+++.+++++++++.++|.++..|..........++++
T Consensus       235 ~~~~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l  314 (547)
T PRK13295        235 LGADDVILMASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRPVSSL  314 (547)
T ss_pred             CCCCCeEEEecCchhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccCCCcccc
Confidence            99999999999999999875 46777889999998888899999999999999999999999999988766666678899


Q ss_pred             EEEEEeCCCChHHHHHHHH-hcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccC
Q 008535          314 VIIVIAGVLPTIEVLEQVA-NFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQN  392 (562)
Q Consensus       314 ~~i~~~g~~l~~~~~~~~~-~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~  392 (562)
                      |.+++||+++++++.+.++ .++.++++.||+||++..++.+....          .......+|.+.++. .++|++. 
T Consensus       315 ~~~~~~G~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~----------~~~~~~~~G~~~~~~-~v~i~d~-  382 (547)
T PRK13295        315 RTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLTKLDDP----------DERASTTDGCPLPGV-EVRVVDA-  382 (547)
T ss_pred             eEEEEecCCCCHHHHHHHHHHhCCCeEEeccCCCCCCeeeccCCCc----------chhccCccccccCCc-EEEEECC-
Confidence            9999999999999999987 56999999999999976554332110          011123567777776 7888886 


Q ss_pred             CcccccCCCCceeEEEEcchhhhhhhcCCchhhHhhhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHH
Q 008535          393 TMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEA  472 (562)
Q Consensus       393 ~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~  472 (562)
                      ++.+++.|  +.|||+|+|+.++.||+++++.+... .+|||+|||+|+++++|++++.||.+|+|+++|.+++|.+||+
T Consensus       383 ~~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~t~~~-~~g~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~~IE~  459 (547)
T PRK13295        383 DGAPLPAG--QIGRLQVRGCSNFGGYLKRPQLNGTD-ADGWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEA  459 (547)
T ss_pred             CCCCCCCC--CCCeEEEEcCcccccccCCccccccC-CCCCeecceEEEEcCCceEEEEeccCCeEEECCEEECHHHHHH
Confidence            56666665  67999999999999999998887765 6889999999999999999999999999999999999999999


Q ss_pred             HHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhc-cCCCCCCCcEEEeec-ccCCCCCcchHHHHh
Q 008535          473 VLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGD-ELPSCMVPRAIFFED-IPVNSTGKVQKFVLR  550 (562)
Q Consensus       473 ~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~-~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~  550 (562)
                      +|.++++|.+++|++.+++..++.+++++++.++.....+++.+++++ .++++++|..+.+++ ||+|++||++|++|+
T Consensus       460 ~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~sgK~~r~~L~  539 (547)
T PRK13295        460 LLYRHPAIAQVAIVAYPDERLGERACAFVVPRPGQSLDFEEMVEFLKAQKVAKQYIPERLVVRDALPRTPSGKIQKFRLR  539 (547)
T ss_pred             HHHhCCCeeeEEEEeeecCCCCcEEEEEEEeCCCCCCCHHHHHHHHHhccCccccCCcEEEEeccCCCCCCccccHHHHH
Confidence            999999999999999999888899999999887766677899999986 799999999988655 999999999999999


Q ss_pred             hhhhhh
Q 008535          551 GKVNAT  556 (562)
Q Consensus       551 ~~~~~~  556 (562)
                      +++++.
T Consensus       540 ~~~~~~  545 (547)
T PRK13295        540 EMLRGE  545 (547)
T ss_pred             HHHhcC
Confidence            988653

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=8.1e-68  Score=564.75  Aligned_cols=509  Identities=24%  Similarity=0.307  Sum_probs=407.9

Q ss_pred             CCh-HHHHHHHHHHcCCceEEEECC------eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhh
Q 008535           20 LTP-IDFLERAAHVYGDATSIIYGT------VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPM   92 (562)
Q Consensus        20 ~ti-~~~l~~~a~~~p~~~a~~~~~------~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~   92 (562)
                      .|+ ..+|+++++.+|+++|+++.+      +++||+||++++.++|+.|.+.|+++||+|+++++|+++++++++||++
T Consensus        66 ~n~~~~~l~~~~~~~p~~~Al~~~~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~  145 (637)
T PRK00174         66 LNVSYNCLDRHLKTRGDKVAIIWEGDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACAR  145 (637)
T ss_pred             eEHHHHHHHHhhccCCCCeEEEEECCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence            344 467888888899999998643      4799999999999999999999999999999999999999999999999


Q ss_pred             ccceEEecCCCCCHHHHHHHHhhCCceEEEEeccch---------HHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCc
Q 008535           93 AGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFV---------EVVQNALDILSPNHKCDKAPLLVTIPECDHYQPST  163 (562)
Q Consensus        93 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (562)
                      +|++++|+++.++.+++.++++.++++++|+++...         +.+.........      ...++.++.....    
T Consensus       146 ~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~----  215 (637)
T PRK00174        146 IGAVHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPS------VEKVIVVRRTGGD----  215 (637)
T ss_pred             cCCEEEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCCC------ccEEEEEcCCCCC----
Confidence            999999999999999999999999999999987542         222222221110      2233333221100    


Q ss_pred             ccccCCCCCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHH-HHhhcCCCCCCeee
Q 008535          164 CSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLA-QISRCDVRDMPVFL  242 (562)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~-~~~~~~~~~~~~~l  242 (562)
                         ..........+.++....... .......++++++|+|||||||.||||+++|+++..+... ....+++.++|+++
T Consensus       216 ---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~  291 (637)
T PRK00174        216 ---VDWVEGRDLWWHELVAGASDE-CEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYW  291 (637)
T ss_pred             ---cCcCCCCcccHHHHHhhcCCC-CCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCCCCCcEEE
Confidence               000001123344444332211 1122345689999999999999999999999997655433 34456888899999


Q ss_pred             eecccccchhhH-HHHHhHhhceEEEEecc----CCHHHHHHHHHhcCeEEEEcchHHHHHHHhcccc--ccccccceEE
Q 008535          243 WTLDMFRCNGWC-CTWAMAAVGGINVCIRT----VSAKIIFDSILIHKVTHLCGQPRILNMIANASAS--DQNQLQRKVI  315 (562)
Q Consensus       243 ~~~pl~~~~gl~-~~~~~~~~g~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~l~~l~~  315 (562)
                      +..|++|..++. ..+.++..|+++++.+.    +++..+++.++++++|++.++|++++.|++....  ...+++++|.
T Consensus       292 ~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~  371 (637)
T PRK00174        292 CTADVGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHPKKYDLSSLRL  371 (637)
T ss_pred             EcCCchHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcccccCCccceeE
Confidence            999999998875 56777888999888642    4799999999999999999999999999886532  2346789999


Q ss_pred             EEEeCCCChHHHHHHHH-hcC---CeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceeccc
Q 008535          316 IVIAGVLPTIEVLEQVA-NFG---FNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQ  391 (562)
Q Consensus       316 i~~~g~~l~~~~~~~~~-~~~---~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~  391 (562)
                      ++++|++++++..+++. .++   +++++.||+||+++.++.....          ........+|.|.++. .++|+|.
T Consensus       372 i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~----------~~~~~~~~vG~p~~g~-~~~i~d~  440 (637)
T PRK00174        372 LGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGGIMITPLPG----------ATPLKPGSATRPLPGI-QPAVVDE  440 (637)
T ss_pred             EEEeCCCCCHHHHHHHHHHhCCCCCceEecccccccCCceEecCCC----------CCCcCCCcccCCCCCc-eEEEECC
Confidence            99999999999998887 344   7899999999998765432110          0111234678888877 8888885


Q ss_pred             CCcccccCCCCceeEEEEcc--hhhhhhhcCCchhhHhhh---ccceeeeCceeEEcCCCcEEEeccccceeecCCeEec
Q 008535          392 NTMKSVPHDGKTLGEVMFRA--NTVMLGYFKNPKATEEAF---RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIIS  466 (562)
Q Consensus       392 ~~~~~~~~~~~~~Gel~v~~--~~~~~gy~~~~~~~~~~~---~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~  466 (562)
                       ++++++.+  +.|||+|+|  |+++.|||++++.+...+   .+|||+|||+|++|+||.+++.||.||+||++|.+|+
T Consensus       441 -~g~~~~~g--~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~dd~ik~~G~~v~  517 (637)
T PRK00174        441 -EGNPLEGG--EGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKGMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLG  517 (637)
T ss_pred             -CCCCCCCC--CcEEEEEcCCCCcccccccCCHHHHHHhhhcCCCCEEECCceEEEcCCCcEEEEEecccEEEeCCEEEC
Confidence             67777665  679999999  689999999998887765   3789999999999999999999999999999999999


Q ss_pred             hHHHHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCCCCC---HHHHHHHHhccCCCCCCCcEEEeec-ccCCCCC
Q 008535          467 SLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREAS---PEELVTFCGDELPSCMVPRAIFFED-IPVNSTG  542 (562)
Q Consensus       467 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~G  542 (562)
                      |.+||++|.++|+|.+++|++.+++..++.++++|++.++...+   .++|+++++++++.+++|..+++++ ||+|++|
T Consensus       518 p~eIE~~l~~~~~V~~~~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~G  597 (637)
T PRK00174        518 TAEIESALVAHPKVAEAAVVGRPDDIKGQGIYAFVTLKGGEEPSDELRKELRNWVRKEIGPIAKPDVIQFAPGLPKTRSG  597 (637)
T ss_pred             HHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHhhcCCccCCCEEEEcCCCCCCCCc
Confidence            99999999999999999999999998999999999988765443   5689999999999999999988665 9999999


Q ss_pred             cchHHHHhhhhhhh
Q 008535          543 KVQKFVLRGKVNAT  556 (562)
Q Consensus       543 Kv~r~~l~~~~~~~  556 (562)
                      |++|+.|++.+++.
T Consensus       598 Ki~R~~L~~~~~~~  611 (637)
T PRK00174        598 KIMRRILRKIAEGE  611 (637)
T ss_pred             chHHHHHHHHHcCC
Confidence            99999999998765

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=100.00  E-value=1.6e-67  Score=551.75  Aligned_cols=506  Identities=26%  Similarity=0.342  Sum_probs=421.0

Q ss_pred             cccCCCCCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhh
Q 008535           13 ASANNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPM   92 (562)
Q Consensus        13 ~~~~~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~   92 (562)
                      ...+....++.++|+++++.+|+++|+++.+..+||+||.+++.++|..|.+.|+++|++|+++++|+++++++++||++
T Consensus        14 ~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~~lA~~~   93 (542)
T PRK06155         14 DPLPPSERTLPAMLARQAERYPDRPLLVFGGTRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAW   93 (542)
T ss_pred             ccCCccccCHHHHHHHHHHHCCCCeEEEeCCccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHH
Confidence            44556777999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceEEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCC
Q 008535           93 AGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPS  172 (562)
Q Consensus        93 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (562)
                      +|++++|+++.++.+++..+++.+++++++++.+....+........      ....++.++......         .  
T Consensus        94 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~---------~--  156 (542)
T PRK06155         94 LGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDL------PLPAVWLLDAPASVS---------V--  156 (542)
T ss_pred             hCCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhccccc------CcceEEEecCccccc---------c--
Confidence            99999999999999999999999999999999877665544322110      012233332211000         0  


Q ss_pred             CCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchh
Q 008535          173 GSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNG  252 (562)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g  252 (562)
                       ...+..................++++++++|||||||.||+|.++|+++..........+++.+++++++.+|++|..+
T Consensus       157 -~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~~  235 (542)
T PRK06155        157 -PAGWSTAPLPPLDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNA  235 (542)
T ss_pred             -ccccchhhhcccCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhcCCCCCCEEEEecCHHHHHH
Confidence             0000000000000001112235689999999999999999999999999888777778889999999999999999999


Q ss_pred             hHHHHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHH
Q 008535          253 WCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVA  332 (562)
Q Consensus       253 l~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~  332 (562)
                      +...+.++..|+++++.+.+++..+++.++++++|.+.++|.++..|++.........++++.++.+|  ++++..+.++
T Consensus       236 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~g~--~~~~~~~~~~  313 (542)
T PRK06155        236 LNAFFQALLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARESDRAHRVRVALGPG--VPAALHAAFR  313 (542)
T ss_pred             HHHHHHHHHcCceEEeeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCccccccCceEEEEEcC--CCHHHHHHHH
Confidence            98888999999999998889999999999999999999999999999887765556677899887666  4577777776


Q ss_pred             -hcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcc
Q 008535          333 -NFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRA  411 (562)
Q Consensus       333 -~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~  411 (562)
                       .++.++++.||+||+++++.....             ......+|.+.++. .++|++. .+++++.+  +.|||+++|
T Consensus       314 ~~~~~~v~~~YG~tE~~~~~~~~~~-------------~~~~~~vG~~~~~~-~~~i~d~-~~~~~~~g--~~Gei~v~~  376 (542)
T PRK06155        314 ERFGVDLLDGYGSTETNFVIAVTHG-------------SQRPGSMGRLAPGF-EARVVDE-HDQELPDG--EPGELLLRA  376 (542)
T ss_pred             HHcCCCEEeeecccccCccccCCCC-------------CCCCCCcCccCCCc-eEEEECC-CCCCCCCC--CceEEEEec
Confidence             569999999999999876554210             11224567777766 7888875 57777766  679999999


Q ss_pred             h---hhhhhhcCCchhhHhhhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEee
Q 008535          412 N---TVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGK  488 (562)
Q Consensus       412 ~---~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~  488 (562)
                      +   .++.||+++++.+...|.+|||+|||+|++++||.+++.||.+|+|+++|.+++|.+||+++.++++|.+++|+++
T Consensus       377 ~~~~~~~~GY~~~~~~~~~~~~~~~~~TGD~~~~~~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~v  456 (542)
T PRK06155        377 DEPFAFATGYFGMPEKTVEAWRNLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPV  456 (542)
T ss_pred             CCccccchhhcCCHHHHHHhhcCCcEeccceEEEcCCceEEEEecCCCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEee
Confidence            8   6899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhh
Q 008535          489 VDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNA  555 (562)
Q Consensus       489 ~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~  555 (562)
                      +++..++.+.+++++.++...+..+++++++++++.+++|..+.+.+ ||+|++||++|++|++.+..
T Consensus       457 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKi~r~~l~~~~~~  524 (542)
T PRK06155        457 PSELGEDEVMAAVVLRDGTALEPVALVRHCEPRLAYFAVPRYVEFVAALPKTENGKVQKFVLREQGVT  524 (542)
T ss_pred             cccccCceEEEEEEECCCCCCCHHHHHHHHHhhCcCccCCcEEEEeccCCCCcccceeHHHHHhhccC
Confidence            99888888899998887777788999999999999999999988655 99999999999999887643

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=8.5e-68  Score=553.55  Aligned_cols=491  Identities=25%  Similarity=0.319  Sum_probs=411.1

Q ss_pred             CCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEE
Q 008535           19 PLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLS   98 (562)
Q Consensus        19 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v   98 (562)
                      +.++.++|.++++++|+++|+.+.++++||+||.+++.++|++|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus        42 ~~~~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v  121 (537)
T PRK13382         42 GMGPTSGFAIAAQRCPDRPGLIDELGTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIGADIL  121 (537)
T ss_pred             cCCHHHHHHHHHHhCCCCeEEEeCCCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHHHHcCcEEE
Confidence            46899999999999999999999889999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCchh
Q 008535           99 ALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYN  178 (562)
Q Consensus        99 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (562)
                      |+++.++.+++.++++.++++++|++......+.........      ...++.+++..               ....+.
T Consensus       122 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~---------------~~~~~~  180 (537)
T PRK13382        122 LLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADCPQ------ATRIVAWTDED---------------HDLTVE  180 (537)
T ss_pred             ecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhhccc------cceEEEecCCc---------------ccccHH
Confidence            999999999999999999999999998766555443221110      11122211110               012233


Q ss_pred             hhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHHHHH
Q 008535          179 DLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWA  258 (562)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~~~~  258 (562)
                      .+....... .  ....+++.++++|||||||.||||.++|.++..........+.+..+++++...|++|.+++...+.
T Consensus       181 ~~~~~~~~~-~--~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~  257 (537)
T PRK13382        181 VLIAAHAGQ-R--PEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWGFSQLVL  257 (537)
T ss_pred             HHhhccCcC-C--CCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhhCCCCCCeEEEecChHhhhHHHHHHH
Confidence            333221111 1  1124578999999999999999999999988887777777788889999999999999999988888


Q ss_pred             hHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhcccc--ccccccceEEEEEeCCCChHHHHHHHH-hcC
Q 008535          259 MAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASAS--DQNQLQRKVIIVIAGVLPTIEVLEQVA-NFG  335 (562)
Q Consensus       259 ~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~l~~l~~i~~~g~~l~~~~~~~~~-~~~  335 (562)
                      ++..|+++++...+++..+++.++++++|++.++|.+++.|++....  ...+++++|.+++||++++++..+.|. .++
T Consensus       258 ~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~  337 (537)
T PRK13382        258 AASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSGRSLRFAAASGSRMRPDVVIAFMDQFG  337 (537)
T ss_pred             HHhcCcEEEECCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhcccCCccceeEEEEcCCCCCHHHHHHHHHHcC
Confidence            89999999888889999999999999999999999999999876532  223456899999999999999999988 568


Q ss_pred             CeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhhh
Q 008535          336 FNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVM  415 (562)
Q Consensus       336 ~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~  415 (562)
                      .++++.||+||++.+++.+...           .......+|.|.++. .++++|. ++++++.|  +.|||+++|+.++
T Consensus       338 ~~i~~~YG~TE~~~~~~~~~~~-----------~~~~~~~vG~p~~~~-~~~i~d~-~~~~~~~g--~~GEl~v~g~~~~  402 (537)
T PRK13382        338 DVIYNNYNATEAGMIATATPAD-----------LRAAPDTAGRPAEGT-EIRILDQ-DFREVPTG--EVGTIFVRNDTQF  402 (537)
T ss_pred             CcEEecccccccCcceecChhH-----------hccCCCCccccCcCc-EEEEECC-CCCCCCCC--CeeEEEEEcCCcc
Confidence            8999999999998655533210           011234678888777 8888886 56777665  6799999999999


Q ss_pred             hhhcCCchhhHhhhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCCCCCc
Q 008535          416 LGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKE  495 (562)
Q Consensus       416 ~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~  495 (562)
                      .||+  ++.+. .|.+|||+|||+++++++|++++.||.||+||.+|.+|+|.+||..|.++|+|.+++|++.++...++
T Consensus       403 ~gY~--~~~~~-~~~~g~~~TGDl~~~~~~g~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~  479 (537)
T PRK13382        403 DGYT--SGSTK-DFHDGFMASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQ  479 (537)
T ss_pred             cCcc--ccchh-hccCCCEeeCceEEEeCCCcEEEeccccceeEECCEEECHHHHHHHHHhCCCEeeEEEEccCccccCC
Confidence            9998  44443 45689999999999999999999999999999999999999999999999999999999999988889


Q ss_pred             eeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhh
Q 008535          496 VPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRG  551 (562)
Q Consensus       496 ~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~  551 (562)
                      .++++|++.++.....++++++++++++.+++|..+.+++ +|+|++||++|++|++
T Consensus       480 ~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~gK~~r~~L~~  536 (537)
T PRK13382        480 RLAAFVVLKPGASATPETLKQHVRDNLANYKVPRDIVVLDELPRGATGKILRRELQA  536 (537)
T ss_pred             EEEEEEEECCCCCCCHHHHHHHHHHhccCCCCCcEEEEeccCCCCCCCCCcHHhhCC
Confidence            9999999887766778899999999999999999988655 9999999999999875

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=2.5e-68  Score=556.58  Aligned_cols=495  Identities=18%  Similarity=0.197  Sum_probs=393.9

Q ss_pred             CCCChHHHHHHHHHHcCCceEEEECC-eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccce
Q 008535           18 VPLTPIDFLERAAHVYGDATSIIYGT-VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAV   96 (562)
Q Consensus        18 ~~~ti~~~l~~~a~~~p~~~a~~~~~-~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~   96 (562)
                      ...++.+.|.+.++.+|+++|+.+.+ +++||+||.++++++|+.|.+   .+||+|+++++|++++++++|||+++|++
T Consensus        17 ~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~Ty~el~~~~~~lA~~L~~---~~gd~Val~~~n~~e~~~~~lA~~~~G~v   93 (539)
T PRK06334         17 SGKTVLESFLKLCSEMTTATVCWDEQLGKLSYNQVRKAVIALATKVSK---YPDQHIGIMMPASAGAYIAYFATLLSGKI   93 (539)
T ss_pred             cCCcHHHHHHHHHHhCCCceEEEeCCCCcccHHHHHHHHHHHHHHHhh---ccCCeEEEEcCCchHHHHHHHHHHhcCCe
Confidence            44689999999999999999998866 689999999999999999987   38999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCc
Q 008535           97 LSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLD  176 (562)
Q Consensus        97 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (562)
                      ++|+++.++.+++.++++.+++++++++.+....+......... .    ...++.+++....               ..
T Consensus        94 ~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~-~----~~~~i~~~~~~~~---------------~~  153 (539)
T PRK06334         94 PVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAE-Y----PFSLIYMEEVRKE---------------LS  153 (539)
T ss_pred             eEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhcccc-c----cccEEEEehhhhh---------------cc
Confidence            99999999999999999999999999987765554432211000 0    1122222111000               00


Q ss_pred             hhhhhh-----cccCc----cccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeeccc
Q 008535          177 YNDLLE-----MGKAD----FEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDM  247 (562)
Q Consensus       177 ~~~~~~-----~~~~~----~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl  247 (562)
                      +.+...     ..+..    ........++++++++|||||||.||||.+||+++..+.......+++..+|++++.+|+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~  233 (539)
T PRK06334        154 FWEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPP  233 (539)
T ss_pred             HHHhhhhhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCCCceEEEecch
Confidence            000000     00000    000122456899999999999999999999999998887777778888999999999999


Q ss_pred             ccchhhHH-HHHhHhhceEEEEec-cCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChH
Q 008535          248 FRCNGWCC-TWAMAAVGGINVCIR-TVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTI  325 (562)
Q Consensus       248 ~~~~gl~~-~~~~~~~g~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~  325 (562)
                      +|.+++.. .+.++..|+++++.. .+++..+++.|+++++|++.++|.+++.|++........++++|.+++||+++++
T Consensus       234 ~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~  313 (539)
T PRK06334        234 FHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQESCLPSLRFVVIGGDAFKD  313 (539)
T ss_pred             HhhhhhHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcccccccccEEEECCccCCH
Confidence            99999864 567778888888765 5799999999999999999999999999988765555678899999999999999


Q ss_pred             HHHHHHHh-c-CCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCc
Q 008535          326 EVLEQVAN-F-GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKT  403 (562)
Q Consensus       326 ~~~~~~~~-~-~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~  403 (562)
                      +..+.+++ + +..+++.||+||++.+++.....           .......+|.|.++. .++|++.+++.+++.|  +
T Consensus       314 ~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~-----------~~~~~~~vG~p~~g~-~v~i~d~~~~~~~~~g--~  379 (539)
T PRK06334        314 SLYQEALKTFPHIQLRQGYGTTECSPVITINTVN-----------SPKHESCVGMPIRGM-DVLIVSEETKVPVSSG--E  379 (539)
T ss_pred             HHHHHHHHHCCCCeEEecccccccCceEEeccCC-----------CCCCCCcCceecCCC-EEEEEcCCCCccCCCC--c
Confidence            99999984 4 68899999999998665543211           011123567777777 7888877667777766  7


Q ss_pred             eeEEEEcchhhhhhhcCCchhhHhhh--ccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCce
Q 008535          404 LGEVMFRANTVMLGYFKNPKATEEAF--RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVL  481 (562)
Q Consensus       404 ~Gel~v~~~~~~~gy~~~~~~~~~~~--~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~  481 (562)
                      .|||+|+|++++.||+++++.+....  .+|||+|||+|++|++|.+++.||.+|+||++|.+|+|.+||++|.+||+|.
T Consensus       380 ~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TGD~g~~d~~G~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~~~v~  459 (539)
T PRK06334        380 TGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESILMEGFGQN  459 (539)
T ss_pred             eEEEEEecCcccccccCCcccccceeeCCceeEECCCEEEECCCCeEEEEeccCCeEEECCEEECHHHHHHHHHHccCCc
Confidence            79999999999999999987644322  3679999999999999999999999999999999999999999999999999


Q ss_pred             e------EEEEeeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhcc-CCCCCCCcEEEeec-ccCCCCCcchHHHHhhhh
Q 008535          482 E------AAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDE-LPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKV  553 (562)
Q Consensus       482 ~------~~v~~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~-l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~  553 (562)
                      +      ++|++.+++.  ..++++++..    .+.++++++++++ ++.|+.|+.+.+++ ||+|++||++|+.|+++.
T Consensus       460 ~~~~~~~~~v~~~~~~~--~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~  533 (539)
T PRK06334        460 AADHAGPLVVCGLPGEK--VRLCLFTTFP----TSISEVNDILKNSKTSSILKISYHHQVESIPMLGTGKPDYCSLNALA  533 (539)
T ss_pred             cccccCceEEEcCCCCc--eEEEEEEecc----CChHHHHHHHHhcCCcccccchheeeecccccccCCcccHHHHHHHH
Confidence            8      7777766432  3444554422    3567899999886 78999999887655 999999999999999885


Q ss_pred             hh
Q 008535          554 NA  555 (562)
Q Consensus       554 ~~  555 (562)
                      ..
T Consensus       534 ~~  535 (539)
T PRK06334        534 KS  535 (539)
T ss_pred             HH
Confidence            54

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=1.3e-68  Score=568.79  Aligned_cols=512  Identities=19%  Similarity=0.230  Sum_probs=387.9

Q ss_pred             CChHHHHHHHHHHcCCceEEEEC----C-----eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHh
Q 008535           20 LTPIDFLERAAHVYGDATSIIYG----T-----VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAV   90 (562)
Q Consensus        20 ~ti~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~   90 (562)
                      .|+.++|+++++.+|+++|+.+.    +     ..+||+||.++++++|++|.+.|+++||+|+++++|+++|+++++||
T Consensus        45 ~t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~  124 (666)
T PLN02614         45 DSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEAC  124 (666)
T ss_pred             CcHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            38999999999999999999741    1     24899999999999999999999999999999999999999999999


Q ss_pred             hhccceEEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCC
Q 008535           91 PMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNF  170 (562)
Q Consensus        91 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (562)
                      +++|++++|+++.++.+++.+++++++++++|++.+....+.........     ....++.++......   .......
T Consensus       125 ~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~-----~l~~vi~~~~~~~~~---~~~~~~~  196 (666)
T PLN02614        125 NAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTE-----YMKTVVSFGGVSREQ---KEEAETF  196 (666)
T ss_pred             HHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHHHHhcccccc-----cceEEEEeCCCChHH---hhhhhhc
Confidence            99999999999999999999999999999999987654333221111000     022333332211000   0000000


Q ss_pred             CCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhc-----CCCCCCeeeeec
Q 008535          171 PSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRC-----DVRDMPVFLWTL  245 (562)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~~~~l~~~  245 (562)
                      .....++.++...............++|+++|+|||||||.||||++||+++..........+     .+..+|++++.+
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~l  276 (666)
T PLN02614        197 GLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYL  276 (666)
T ss_pred             CcEEEEHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccCCCCCcEEEEec
Confidence            001234555544322111111223578999999999999999999999999988766554443     567899999999


Q ss_pred             ccccchhhHHHHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccc-------------------
Q 008535          246 DMFRCNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASD-------------------  306 (562)
Q Consensus       246 pl~~~~gl~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~-------------------  306 (562)
                      |++|.+++...+.++..|+++++.+ .++..+++.+++++||+++++|.+++.|.......                   
T Consensus       277 Pl~H~~~~~~~~~~l~~G~~v~~~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~  355 (666)
T PLN02614        277 PLAHIFDRVIEECFIQHGAAIGFWR-GDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYK  355 (666)
T ss_pred             cHHHHHHHHHHHHHHHhCCEEEEeC-CCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            9999999876666677888887764 68999999999999999999999999886421100                   


Q ss_pred             -------------------------cccc-cceEEEEEeCCCChHHHHHHHHhc-CCeeeccccCccccCcccccccCCC
Q 008535          307 -------------------------QNQL-QRKVIIVIAGVLPTIEVLEQVANF-GFNIRHAYGMTEVLGPAIVRQWKPE  359 (562)
Q Consensus       307 -------------------------~~~l-~~l~~i~~~g~~l~~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~~~~~  359 (562)
                                               ...+ +++|.+++||++++++..+.++.+ ++++++.||+||+++.++.....  
T Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~--  433 (666)
T PLN02614        356 FGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESCAGTFVSLPD--  433 (666)
T ss_pred             HHHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHhcCCCEEeeCchHhhhhheeeeccc--
Confidence                                     0011 689999999999998765544556 48999999999987644332110  


Q ss_pred             CCCCcCCccccccccccCccccccccceecccCC--cccccCCCCceeEEEEcchhhhhhhcCCchhhHhhhccceeeeC
Q 008535          360 GESSALDHEHEMTKHREGLNNLLIQGVDVKQQNT--MKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTG  437 (562)
Q Consensus       360 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~--~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TG  437 (562)
                               .......+|.|.++. .++|++.++  +.+++.+  +.|||+|+||+++.|||++|+.|.+.|.+|||+||
T Consensus       434 ---------~~~~~gsvG~p~pg~-evki~d~~~~~~~~~~~g--~~GEl~vrGp~v~~GY~~~pe~T~~~f~dGw~~TG  501 (666)
T PLN02614        434 ---------ELDMLGTVGPPVPNV-DIRLESVPEMEYDALAST--PRGEICIRGKTLFSGYYKREDLTKEVLIDGWLHTG  501 (666)
T ss_pred             ---------cCCcCCcccCcCCce-EEEEeeecccCcccCCCC--CCceEEEcCCcccccccCCHHHhhhhhccCCcccc
Confidence                     001234678888877 788877433  2445544  77999999999999999999999999999999999


Q ss_pred             ceeEEcCCCcEEEeccccceee-cCCeEechHHHHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCC---------
Q 008535          438 DLAVRNPDGYVQMKDRRKDIII-SGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGR---------  507 (562)
Q Consensus       438 D~~~~~~~g~l~~~GR~~d~i~-~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~---------  507 (562)
                      |+|++|+||+++|+||.||+|| .+|++|+|.+||++|.+||.|.+++|++....   ..++++|+++...         
T Consensus       502 Dlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g~~~~---~~l~alvv~~~~~~~~~~~~~~  578 (666)
T PLN02614        502 DVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFE---SFLVAIANPNQQILERWAAENG  578 (666)
T ss_pred             eEEEEcCCCCEEEEEcchhceecCCCeeecHHHHHHHHhcCCCeeEEEEEecCCc---ceEEEEEeCCHHHHHHHHHhcC
Confidence            9999999999999999999999 57999999999999999999999999987532   2488888876421         


Q ss_pred             -CCC----------HHHHHHHH-----hccCCCCCCCcEEEeeccc-------CCCCCcchHHHHhhhhhhhc
Q 008535          508 -EAS----------PEELVTFC-----GDELPSCMVPRAIFFEDIP-------VNSTGKVQKFVLRGKVNATA  557 (562)
Q Consensus       508 -~~~----------~~~l~~~~-----~~~l~~~~~p~~i~~~~lP-------~t~~GKv~r~~l~~~~~~~~  557 (562)
                       ..+          .+.+.+.+     ++.|+.+.+++.+.+.+-|       +|+++|++|..+.+.|.+.-
T Consensus       579 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~l~~~~f~~~ng~lTpt~K~kR~~i~~~y~~~i  651 (666)
T PLN02614        579 VSGDYNALCQNEKAKEFILGELVKMAKEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSVI  651 (666)
T ss_pred             CCcCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCCcCCcCCHhhhhhHHHHHHHHHHHH
Confidence             001          11222222     3569999999999887633       89999999999999988764

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.6e-67  Score=554.54  Aligned_cols=519  Identities=24%  Similarity=0.313  Sum_probs=427.5

Q ss_pred             ccCCCCCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCcHHHHHHHHHhhh
Q 008535           14 SANNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQL-KISRGDIVAAMAPNIPALYKLHFAVPM   92 (562)
Q Consensus        14 ~~~~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~-gv~~gd~V~i~~~~~~~~~~~~lA~~~   92 (562)
                      +...++.|+.++|.+.++.+|+++|+.+.++++||+||.+++.++|..|.+. |+++||+|+++++|+++++++++||++
T Consensus         4 ~~~~~~~tl~~~l~~~a~~~~~~~a~~~~~~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~   83 (546)
T PRK08314          4 SLTLPETSLFHNLEVSARRYPDKTAIVFYGRAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILR   83 (546)
T ss_pred             CCCCCCCCHHHHHHHHHHHcCCCcceeecCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHHHHHH
Confidence            4456788999999999999999999999999999999999999999999998 999999999999999999999999999


Q ss_pred             ccceEEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCC-------CCCCCccc
Q 008535           93 AGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECD-------HYQPSTCS  165 (562)
Q Consensus        93 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~  165 (562)
                      +|++++|+++..+.+++.++++.+++++++++......+......+.       ...++......       ...+....
T Consensus        84 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (546)
T PRK08314         84 ANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLR-------LRHVIVAQYSDYLPAEPEIAVPAWLR  156 (546)
T ss_pred             cCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhccC-------cceEEEecchhhcccccccCcccccc
Confidence            99999999999999999999999999999999887766554332211       11111111000       00000000


Q ss_pred             ----ccCCCCCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCee
Q 008535          166 ----VANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVF  241 (562)
Q Consensus       166 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~  241 (562)
                          .......+...+++.......  ....+..++++++++|||||||.||+|.++|+++..+.......+++...|++
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~  234 (546)
T PRK08314        157 AEPPLQALAPGGVVAWKEALAAGLA--PPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPESVV  234 (546)
T ss_pred             cccccccccccccccHHHHhcccCC--CCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCceE
Confidence                000011233445554433211  11223467899999999999999999999999999988888888889999999


Q ss_pred             eeecccccchhhH-HHHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeC
Q 008535          242 LWTLDMFRCNGWC-CTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAG  320 (562)
Q Consensus       242 l~~~pl~~~~gl~-~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g  320 (562)
                      ++.+|++|.+|+. .++.++..|+++++.+.+++..+++.++++++|++.++|.+++.++.........++++|.+++||
T Consensus       235 l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~~~~~~~l~~~~~gG  314 (546)
T PRK08314        235 LAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPGLAERDLSSLRYIGGGG  314 (546)
T ss_pred             EEEcCchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCCCccccCchhhheeeecc
Confidence            9999999999975 466778899999999889999999999999999999999999999876555556678999999999


Q ss_pred             CCChHHHHHHHH-hcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccC
Q 008535          321 VLPTIEVLEQVA-NFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPH  399 (562)
Q Consensus       321 ~~l~~~~~~~~~-~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~  399 (562)
                      ++++++..+++. .++.++++.||+||++.........            ......+|.+.++. .+++++.+++..++.
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~------------~~~~~~~G~~~~g~-~~~i~d~~~~~~~~~  381 (546)
T PRK08314        315 AAMPEAVAERLKELTGLDYVEGYGLTETMAQTHSNPPD------------RPKLQCLGIPTFGV-DARVIDPETLEELPP  381 (546)
T ss_pred             ccCCHHHHHHHHHHcCCcEEecccccccccceecCCCc------------CCCCCccCcccCCe-EEEEEeCCCCcCCCC
Confidence            999999999988 5699999999999997655432110            11224567777776 788888777787776


Q ss_pred             CCCceeEEEEcchhhhhhhcCCchhhHhhhc----cceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHh
Q 008535          400 DGKTLGEVMFRANTVMLGYFKNPKATEEAFR----NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLL  475 (562)
Q Consensus       400 ~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~----~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~  475 (562)
                      +  +.|||+|+|+.++.||++++..+.+.|.    ++||+|||+|+++++|.+++.||.||+|+++|.+|+|.+||+++.
T Consensus       382 g--~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~i~  459 (546)
T PRK08314        382 G--EVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENLLY  459 (546)
T ss_pred             C--CceEEEEECCchhccccCChhHhhhhhhhcCCCceEecCCEEEEcCCCcEEEEecchhhEEeCCEEECHHHHHHHHH
Confidence            6  6799999999999999999998888773    359999999999999999999999999999999999999999999


Q ss_pred             cCCCceeEEEEeeeCCCCCceeEEEEEeCCCCC--CCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhh
Q 008535          476 SNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGRE--ASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGK  552 (562)
Q Consensus       476 ~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~--~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~  552 (562)
                      ++++|.+++|++.++...++.+++++++.++..  .+.++++++++++++++++|+.+++++ ||+|++||++|+.|++.
T Consensus       460 ~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~GKv~r~~L~~~  539 (546)
T PRK08314        460 KHPAIQEACVIATPDPRRGETVKAVVVLRPEARGKTTEEEIIAWAREHMAAYKYPRIVEFVDSLPKSGSGKILWRQLQEQ  539 (546)
T ss_pred             hCcchheEEEEeCCCcccCceeEEEEEECCCCCCCCCHHHHHHHHHHhcccCCCCcEEEEecCCCCCCccceeHHHHHHH
Confidence            999999999999999888899999999876532  356899999999999999999988655 99999999999999876


Q ss_pred             hhhh
Q 008535          553 VNAT  556 (562)
Q Consensus       553 ~~~~  556 (562)
                      ..+.
T Consensus       540 ~~~~  543 (546)
T PRK08314        540 EKAR  543 (546)
T ss_pred             Hhhh
Confidence            5543

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.8e-67  Score=560.24  Aligned_cols=517  Identities=18%  Similarity=0.224  Sum_probs=406.9

Q ss_pred             CCCh-HHHHHHHHHHcCCceEEEEC------CeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhh
Q 008535           19 PLTP-IDFLERAAHVYGDATSIIYG------TVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVP   91 (562)
Q Consensus        19 ~~ti-~~~l~~~a~~~p~~~a~~~~------~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~   91 (562)
                      ..|+ .++|+++++.+|+++|+++.      .+++||+||.+++.++|+.|.+.|+++||+|+++++|+++++++++||+
T Consensus        51 ~~n~~~~~l~~~~~~~p~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~  130 (629)
T PRK10524         51 RTNLCHNAVDRHLAKRPEQLALIAVSTETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLACA  130 (629)
T ss_pred             EeeHHHHHHHHhhccCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence            3454 57788888889999999862      3689999999999999999999999999999999999999999999999


Q ss_pred             hccceEEecCCCCCHHHHHHHHhhCCceEEEEeccc---------hHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCC
Q 008535           92 MAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQF---------VEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPS  162 (562)
Q Consensus        92 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (562)
                      ++|++++|+++.++.+++..++++++++++|+++..         .+.+..+.......     ...++.++.....   
T Consensus       131 ~~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~vi~~~~~~~~---  202 (629)
T PRK10524        131 RIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHK-----PRHVLLVDRGLAP---  202 (629)
T ss_pred             HhCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCC-----CCEEEEEeCCCCC---
Confidence            999999999999999999999999999999997642         23333333222111     2233333321100   


Q ss_pred             cccccCCCCCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHH-HHHhhcCCCCCCee
Q 008535          163 TCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSL-AQISRCDVRDMPVF  241 (562)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~-~~~~~~~~~~~~~~  241 (562)
                          ..........+.++...............++++++++|||||||.||||+++|.++..... .....+++.++|++
T Consensus       203 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~d~~  278 (629)
T PRK10524        203 ----MARVAGRDVDYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETF  278 (629)
T ss_pred             ----cCcccCCcccHHHHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCCEE
Confidence                0000111234444443322111111223567999999999999999999999998754443 33445688899999


Q ss_pred             eeecccccchhhH-HHHHhHhhceEEEEec----cCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccc--cccccccceE
Q 008535          242 LWTLDMFRCNGWC-CTWAMAAVGGINVCIR----TVSAKIIFDSILIHKVTHLCGQPRILNMIANASA--SDQNQLQRKV  314 (562)
Q Consensus       242 l~~~pl~~~~gl~-~~~~~~~~g~~~v~~~----~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~--~~~~~l~~l~  314 (562)
                      ++..|+.|..+.. .++.++..|+++++.+    ..++..+++.++++++|+++++|++++.|.+...  ....+++++|
T Consensus       279 ~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr  358 (629)
T PRK10524        279 FCASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALLRKHDLSSLR  358 (629)
T ss_pred             EEcCCCCeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcccccccChhhee
Confidence            9999999988864 4677788888888765    3578999999999999999999999999877542  2334678999


Q ss_pred             EEEEeCCCChHHHHHHHH-hcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCC
Q 008535          315 IIVIAGVLPTIEVLEQVA-NFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNT  393 (562)
Q Consensus       315 ~i~~~g~~l~~~~~~~~~-~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~  393 (562)
                      .+++||+++++++.+++. .++.++++.||+||++..+.......        .........+|.|.+++ .++|++.++
T Consensus       359 ~i~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~--------~~~~~~~~~~G~p~~g~-~~~i~d~~~  429 (629)
T PRK10524        359 ALFLAGEPLDEPTASWISEALGVPVIDNYWQTETGWPILAIARGV--------EDRPTRLGSPGVPMYGY-NVKLLNEVT  429 (629)
T ss_pred             EEEEeCCCCCHHHHHHHHHhcCCCeEeccccccccchhhcCCCCc--------ccCcCCCCCcccCcCCc-eEEEEeCCC
Confidence            999999999999999987 56899999999999975433221100        00111234567777777 788888757


Q ss_pred             cccccCCCCceeEEEEcch---hhhhhhcCCchhhHhhh----ccceeeeCceeEEcCCCcEEEeccccceeecCCeEec
Q 008535          394 MKSVPHDGKTLGEVMFRAN---TVMLGYFKNPKATEEAF----RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIIS  466 (562)
Q Consensus       394 ~~~~~~~~~~~Gel~v~~~---~~~~gy~~~~~~~~~~~----~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~  466 (562)
                      +++++.+  +.|||+++||   ..+.+|+++++.+.+.+    .+|||+|||+|++|+||.+++.||.||+||++|.+|+
T Consensus       430 g~~~~~g--~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~  507 (629)
T PRK10524        430 GEPCGPN--EKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQVYSTFDWGIRDADGYYFILGRTDDVINVAGHRLG  507 (629)
T ss_pred             CCCCCCC--CcEEEEEcCCCChhhcCCccCChHHHHHhhhccCCCcEEEcCCcEEEcCCCcEEEEEEecCeEEeCCEEeC
Confidence            7777765  7799999998   57889999987776554    4689999999999999999999999999999999999


Q ss_pred             hHHHHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCCCC--------CHHHHHHHHhccCCCCCCCcEEEeec-cc
Q 008535          467 SLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREA--------SPEELVTFCGDELPSCMVPRAIFFED-IP  537 (562)
Q Consensus       467 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~--------~~~~l~~~~~~~l~~~~~p~~i~~~~-lP  537 (562)
                      |.+||++|.++|+|.+++|++.+++..++.+++++++.++...        ..++++++++++++.+++|..+.+++ ||
T Consensus       508 p~eIE~~l~~~p~V~e~~vvg~~d~~~g~~~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~i~~v~~lP  587 (629)
T PRK10524        508 TREIEESISSHPAVAEVAVVGVKDALKGQVAVAFVVPKDSDSLADREARLALEKEIMALVDSQLGAVARPARVWFVSALP  587 (629)
T ss_pred             HHHHHHHHHhCCCcceEEEEccccCCCCeEEEEEEEECCCCccccccchHHHHHHHHHHHHhhcCCCcCCCEEEEcCCCC
Confidence            9999999999999999999999999889999999998765432        24689999999999999999988765 99


Q ss_pred             CCCCCcchHHHHhhhhhhhcc
Q 008535          538 VNSTGKVQKFVLRGKVNATAV  558 (562)
Q Consensus       538 ~t~~GKv~r~~l~~~~~~~~~  558 (562)
                      +|++||++|+.|++++++...
T Consensus       588 ~T~sGKi~R~~L~~~~~~~~~  608 (629)
T PRK10524        588 KTRSGKLLRRAIQAIAEGRDP  608 (629)
T ss_pred             CCCCcchHHHHHHHHHcCCCC
Confidence            999999999999999876543

>PRK07470 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.5e-67  Score=549.37  Aligned_cols=512  Identities=23%  Similarity=0.359  Sum_probs=418.9

Q ss_pred             CCCCCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccc
Q 008535           16 NNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGA   95 (562)
Q Consensus        16 ~~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~   95 (562)
                      ...++|+.++|.+.++.+|+++|+.+.+.++||+||.+++.++|+.|.+.|+++||+|+++++|+++++++++||+++|+
T Consensus         3 ~~~~~~~~~~~~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~   82 (528)
T PRK07470          3 SRRVMNLAHFLRQAARRFPDRIALVWGDRSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLGA   82 (528)
T ss_pred             cccCCCHHHHHHHHHHHCCCceEEEECCccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhCCe
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCC
Q 008535           96 VLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSL  175 (562)
Q Consensus        96 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (562)
                      +++++++..+.+++.++++.++++.++++....+...........      ...++.+....               ...
T Consensus        83 ~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~---------------~~~  141 (528)
T PRK07470         83 VWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASPD------LTHVVAIGGAR---------------AGL  141 (528)
T ss_pred             EEEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHhhCCc------CceEEEeCCCc---------------ccc
Confidence            999999999999999999999999999998766655443322110      12222222111               012


Q ss_pred             chhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhc--CCCCCCeeeeecccccchhh
Q 008535          176 DYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRC--DVRDMPVFLWTLDMFRCNGW  253 (562)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~--~~~~~~~~l~~~pl~~~~gl  253 (562)
                      ++.++...............++++++++|||||||.||+|.++|+++..........+  +....|+++...|++|.+++
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~  221 (528)
T PRK07470        142 DYEALVARHLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGI  221 (528)
T ss_pred             cHHHHHhcCCCCCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHH
Confidence            3444433321111112234568999999999999999999999999876544433322  46778999999999999998


Q ss_pred             HHHHHhHhhceEEEEec--cCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHH
Q 008535          254 CCTWAMAAVGGINVCIR--TVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQV  331 (562)
Q Consensus       254 ~~~~~~~~~g~~~v~~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~  331 (562)
                      ...+ .+..|++.++.+  .+++..+++.++++++|+++++|.+++.+.+........++++|.+++||++++++..+.+
T Consensus       222 ~~~~-~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~  300 (528)
T PRK07470        222 HQLC-QVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDRYDHSSLRYVIYAGAPMYRADQKRA  300 (528)
T ss_pred             HHHH-HHhcCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCcCCCCCcceEEEEEcCCCCCHHHHHHH
Confidence            7554 466777776654  5789999999999999999999999999988776556678899999999999999988887


Q ss_pred             H-hcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEc
Q 008535          332 A-NFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFR  410 (562)
Q Consensus       332 ~-~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~  410 (562)
                      . .++.++++.||+||+++.+........ ..   ..........+|.+.++. .+++.+. ++.+++.+  +.|||+++
T Consensus       301 ~~~~g~~~~~~YG~TE~~~~~~~~~~~~~-~~---~~~~~~~~~~~G~~~~g~-~~~i~d~-~~~~~~~g--~~Gel~i~  372 (528)
T PRK07470        301 LAKLGKVLVQYFGLGEVTGNITVLPPALH-DA---EDGPDARIGTCGFERTGM-EVQIQDD-EGRELPPG--ETGEICVI  372 (528)
T ss_pred             HHHhCcHHHHhCCCcccCCceeecchhhc-cc---cccccceeeccCcccCCc-EEEEECC-CCCCCCCC--CceEEEEe
Confidence            6 568899999999999876554321100 00   000112234567777766 7777775 66777665  67999999


Q ss_pred             chhhhhhhcCCchhhHhhhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeC
Q 008535          411 ANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVD  490 (562)
Q Consensus       411 ~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~  490 (562)
                      |+.++.||+++++.+...|.+|||+|||+|+++++|++++.||.||+|+++|.+++|.+||..+..++.|.+++|++.++
T Consensus       373 ~~~~~~gy~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~  452 (528)
T PRK07470        373 GPAVFAGYYNNPEANAKAFRDGWFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPD  452 (528)
T ss_pred             CCccchhhcCCHHHHHhhhcCCcEecceeEEEccCCeEEEeCCccceEEeCCEEECHHHHHHHHHhCCCceEEEEEeccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhhc
Q 008535          491 DQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNATA  557 (562)
Q Consensus       491 ~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~~  557 (562)
                      +..++.++++++..++...+.+++++++++.++.+++|..+++.+ ||+|++||++|+.|++++.++.
T Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~P~~~~~~~~iP~t~~GKi~r~~l~~~~~~~~  520 (528)
T PRK07470        453 PVWGEVGVAVCVARDGAPVDEAELLAWLDGKVARYKLPKRFFFWDALPKSGYGKITKKMVREELEERG  520 (528)
T ss_pred             cccCceeEEEEEECCCCCCCHHHHHHHHHHhhhcCCCCcEEEEeccCCCCCcccccHHHHHHHHHhcc
Confidence            888888889998877766788999999999999999999887654 9999999999999999988765

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5.2e-67  Score=547.22  Aligned_cols=505  Identities=30%  Similarity=0.437  Sum_probs=426.9

Q ss_pred             CCCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceE
Q 008535           18 VPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVL   97 (562)
Q Consensus        18 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~   97 (562)
                      ...++.+.|++.++.+|+++|+.+.+.++||+||++.+.++|..|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus         3 ~~~~i~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~la~~~~G~~~   82 (513)
T PRK07656          3 EWMTLPELLARAARRFGDKEAYVFGDQRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVV   82 (513)
T ss_pred             ccccHHHHHHHHHHHCCCCeEEEeCCCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEE
Confidence            44689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCch
Q 008535           98 SALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDY  177 (562)
Q Consensus        98 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (562)
                      +|+++..+.+++..+++.+++++++++.............+..      ...++.+......         .......+|
T Consensus        83 v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~---------~~~~~~~~~  147 (513)
T PRK07656         83 VPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPA------LEHVVICETEEDD---------PHTEKMKTF  147 (513)
T ss_pred             EecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHHhccCC------ccEEEEEcCcccc---------cCccccccH
Confidence            9999999999999999999999999998766655443322111      2223222222110         000122445


Q ss_pred             hhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHH-H
Q 008535          178 NDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCC-T  256 (562)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~-~  256 (562)
                      .++....... ....+..++++++++|||||||.||+|.++|.++..........+++..++++++..|++|.+++.. +
T Consensus       148 ~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (513)
T PRK07656        148 TDFLAAGDPA-ERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGV  226 (513)
T ss_pred             HHHHhcCCCC-CCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhhCCCCCCeEEEccchHHHHHHHHHH
Confidence            5555433221 1222356789999999999999999999999999888888888889999999999999999999865 6


Q ss_pred             HHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHH-hcC
Q 008535          257 WAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVA-NFG  335 (562)
Q Consensus       257 ~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~-~~~  335 (562)
                      +.++..|+++++.+..++..+++.++++++|++.++|.+++.|.+........++++|.+++||++++++..+.+. .++
T Consensus       227 ~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~  306 (513)
T PRK07656        227 NAPLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAEDLSSLRLAVTGAASMPVALLERFESELG  306 (513)
T ss_pred             HHHHHcCceEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCCCCccceeeEEecCCCCCHHHHHHHHHHcC
Confidence            6777888888887788999999999999999999999999999988766666788999999999999999999987 568


Q ss_pred             C-eeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhh
Q 008535          336 F-NIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTV  414 (562)
Q Consensus       336 ~-~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~  414 (562)
                      . .+++.||+||+++++..+......         ......+|.+.++. .+++++. .+.+++.+  +.|||+++|+.+
T Consensus       307 ~~~~~~~YG~tE~~~~~~~~~~~~~~---------~~~~~~vG~~~~~~-~~~i~d~-~~~~~~~g--~~Gel~v~~~~~  373 (513)
T PRK07656        307 VDIVLTGYGLSEASGVTTFNRLDDDR---------KTVAGTIGTAIAGV-ENKIVNE-LGEEVPVG--EVGELLVRGPNV  373 (513)
T ss_pred             CCceEeEEccccCCCceeecCccccc---------cccCCCccccCCCc-EEEEECC-CCCCCCCC--CceEEEEEcchh
Confidence            8 899999999998777655422110         01134678887776 7888875 56777665  679999999999


Q ss_pred             hhhhcCCchhhHhhhc-cceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCCCC
Q 008535          415 MLGYFKNPKATEEAFR-NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQL  493 (562)
Q Consensus       415 ~~gy~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~  493 (562)
                      +.||++++..+...+. +|||+|||+|+++++|.+++.||.+|+|+++|.+++|.+||+.|.++++|.+++|++.+++..
T Consensus       374 ~~gy~~~~~~~~~~~~~~~~~~tGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~  453 (513)
T PRK07656        374 MKGYYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERL  453 (513)
T ss_pred             hhhhcCCHHHHhhhhccCCceeccceEEEcCCeeEEEEecccceEEeCCEEeCHHHHHHHHHhCCCeeEEEEEecCCccc
Confidence            9999999988888887 899999999999999999999999999999999999999999999999999999999998888


Q ss_pred             CceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhh
Q 008535          494 KEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRG  551 (562)
Q Consensus       494 ~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~  551 (562)
                      ++.++++++.+++...+.+++.++++++++++++|..+.+++ ||+|++||++|++|++
T Consensus       454 g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~iP~t~~gK~~r~~l~~  512 (513)
T PRK07656        454 GEVGKAYVVLKPGAELTEEELIAYCREHLAKYKVPRSIEFLDELPKNATGKVLKRALRE  512 (513)
T ss_pred             CceEEEEEEECCCCCCCHHHHHHHHHhhcccccCCCEEEEecCCCCCCccceeHHHHhc
Confidence            889999999877666788999999999999999999888655 9999999999999975

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.2e-67  Score=554.64  Aligned_cols=518  Identities=24%  Similarity=0.330  Sum_probs=422.6

Q ss_pred             CCCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceE
Q 008535           18 VPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVL   97 (562)
Q Consensus        18 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~   97 (562)
                      ...|+.++++++++.+|+++|+.+.+..+||.||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus        30 ~~~~l~~~~~~~~~~~p~~~a~~~~~~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  109 (573)
T PRK05605         30 GDTTLVDLYDNAVARFGDRPALDFFGATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVV  109 (573)
T ss_pred             CcCCHHHHHHHHHHHCCCCeEEEeCCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEE
Confidence            34689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCC-----------cc--
Q 008535           98 SALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPS-----------TC--  164 (562)
Q Consensus        98 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~--  164 (562)
                      +|++|.++.+++.+++++++++++|+++.....+........       ...++.++......+.           ..  
T Consensus       110 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (573)
T PRK05605        110 VEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTTP-------LETIVSVNMIAAMPLLQRLALRLPIPALRKA  182 (573)
T ss_pred             eecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhccc-------cceeEeeeccccccccccccccccccccccc
Confidence            999999999999999999999999998876655544332111       1122222111000000           00  


Q ss_pred             -cccCCCCCCCCchhhhhhcccCc---cccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcC--CCCC
Q 008535          165 -SVANNFPSGSLDYNDLLEMGKAD---FEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCD--VRDM  238 (562)
Q Consensus       165 -~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~--~~~~  238 (562)
                       ........+..+|.++.......   .........+++++++|||||||.||+|.+||+++..........+.  ....
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~  262 (573)
T PRK05605        183 RAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGP  262 (573)
T ss_pred             ccccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccccCCCC
Confidence             00000111234455544332111   01112245689999999999999999999999998877654433332  2346


Q ss_pred             CeeeeecccccchhhHH-HHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEE
Q 008535          239 PVFLWTLDMFRCNGWCC-TWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIV  317 (562)
Q Consensus       239 ~~~l~~~pl~~~~gl~~-~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~  317 (562)
                      +++++..|++|.+|+.. .+.++..|+++++.+..++..+++.++++++|++.++|.+++.|.+........++++|.++
T Consensus       263 ~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~  342 (573)
T PRK05605        263 ERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERGVDLSGVRNAF  342 (573)
T ss_pred             cEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccCCCchhccEEE
Confidence            89999999999998764 45567788888888888999999999999999999999999999987766667788999999


Q ss_pred             EeCCCChHHHHHHHH-hcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCC-cc
Q 008535          318 IAGVLPTIEVLEQVA-NFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNT-MK  395 (562)
Q Consensus       318 ~~g~~l~~~~~~~~~-~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~-~~  395 (562)
                      +||++++++..+.++ .++.++++.||+||+++++..+....           ......+|.+.++. .++|.+.++ +.
T Consensus       343 ~gg~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~-----------~~~~~~~G~~~~~~-~~~i~d~~~~~~  410 (573)
T PRK05605        343 SGAMALPVSTVELWEKLTGGLLVEGYGLTETSPIIVGNPMSD-----------DRRPGYVGVPFPDT-EVRIVDPEDPDE  410 (573)
T ss_pred             ECCCcCCHHHHHHHHHHhCCCeecccccchhchhhhcCCccc-----------CCcCCccccCCCCC-EEEEEcCCCCCc
Confidence            999999999999988 45889999999999987665432110           11234677777776 888888755 56


Q ss_pred             cccCCCCceeEEEEcchhhhhhhcCCchhhHhhhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHh
Q 008535          396 SVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLL  475 (562)
Q Consensus       396 ~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~  475 (562)
                      +++.+  +.|||+++|+.++.||++++..+...|.+|||+|||+|++|++|.+++.||.||+|+.+|.+|+|.+||+++.
T Consensus       411 ~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~i~gR~dd~i~~~G~~v~p~eIE~~l~  488 (573)
T PRK05605        411 TMPDG--EEGELLVRGPQVFKGYWNRPEETAKSFLDGWFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLR  488 (573)
T ss_pred             cCCCC--CeeEEEEecCchhhhhcCChhHhhhcccCCCcccCCEEEEcCCCcEEEEeccccceeeCCEEECHHHHHHHHH
Confidence            66655  6799999999999999999999999998999999999999999999999999999999999999999999999


Q ss_pred             cCCCceeEEEEeeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEee-cccCCCCCcchHHHHhhhhh
Q 008535          476 SNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFE-DIPVNSTGKVQKFVLRGKVN  554 (562)
Q Consensus       476 ~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~-~lP~t~~GKv~r~~l~~~~~  554 (562)
                      .++.|.+++|++.++...++.+++++++.++...+.++++++++++++.+++|..+++. +||+|.+||++|++|++++.
T Consensus       489 ~~~~i~~~~v~~~~~~~~~~~~~~~vv~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~iP~t~~GKi~r~~L~~~~~  568 (573)
T PRK05605        489 EHPGVEDAAVVGLPREDGSEEVVAAVVLEPGAALDPEGLRAYCREHLTRYKVPRRFYHVDELPRDQLGKVRRREVREELL  568 (573)
T ss_pred             hCcccceEEEEeeecccCCeEEEEEEEECCCCCCCHHHHHHHHHHhCccccCCcEEEEeccCCCCCcccccHHHHHHHHH
Confidence            99999999999999988889999999988877778899999999999999999988765 59999999999999999986


Q ss_pred             hh
Q 008535          555 AT  556 (562)
Q Consensus       555 ~~  556 (562)
                      +.
T Consensus       569 ~~  570 (573)
T PRK05605        569 EK  570 (573)
T ss_pred             HH
Confidence            54

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=1.4e-67  Score=554.65  Aligned_cols=503  Identities=23%  Similarity=0.343  Sum_probs=405.7

Q ss_pred             ChHHHHHHHHHHcCCceEEEECC--eeccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHhhhccceE
Q 008535           21 TPIDFLERAAHVYGDATSIIYGT--VRFSWRQTHQICLKLASALAQ-LKISRGDIVAAMAPNIPALYKLHFAVPMAGAVL   97 (562)
Q Consensus        21 ti~~~l~~~a~~~p~~~a~~~~~--~~~Ty~el~~~~~~~a~~L~~-~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~   97 (562)
                      ++.+.+... +.+|+++|+++..  .++||+||.+++.++|+.|.+ .|+++||+|+++++|++++++++|||+++|+++
T Consensus        41 ~~~~~l~~~-~~~~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~  119 (560)
T PLN02574         41 DAVSFIFSH-HNHNGDTALIDSSTGFSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIV  119 (560)
T ss_pred             CHHHHHhcC-cccCCCCEEEECCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHhCeEE
Confidence            443333333 5789999999864  379999999999999999999 999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCch
Q 008535           98 SALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDY  177 (562)
Q Consensus        98 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (562)
                      +|++|..+.+++.++++.+++++++++.+..+.+...    .       .. ++.+.......+        .......+
T Consensus       120 v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~----~-------~~-~~~~~~~~~~~~--------~~~~~~~~  179 (560)
T PLN02574        120 TTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPL----G-------VP-VIGVPENYDFDS--------KRIEFPKF  179 (560)
T ss_pred             eCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhc----C-------Cc-EEecCccccccc--------CccCcccH
Confidence            9999999999999999999999999997755544321    0       11 222211100000        00111234


Q ss_pred             hhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHh----hcC-CCCCCeeeeecccccchh
Q 008535          178 NDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQIS----RCD-VRDMPVFLWTLDMFRCNG  252 (562)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~----~~~-~~~~~~~l~~~pl~~~~g  252 (562)
                      ..+........ ......++++++++|||||||.||||.+||+++.........    .+. ....++++..+|++|.+|
T Consensus       180 ~~~~~~~~~~~-~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g  258 (560)
T PLN02574        180 YELIKEDFDFV-PKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYG  258 (560)
T ss_pred             HHHhhcCCccc-ccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHH
Confidence            44333322111 112235679999999999999999999999998877665433    222 235678899999999999


Q ss_pred             hHHH-HHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhcccc-ccccccceEEEEEeCCCChHHHHHH
Q 008535          253 WCCT-WAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASAS-DQNQLQRKVIIVIAGVLPTIEVLEQ  330 (562)
Q Consensus       253 l~~~-~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~-~~~~l~~l~~i~~~g~~l~~~~~~~  330 (562)
                      +... +.++..|+++++.+.+++..+++.++++++|+++++|.+++.|++.... ....++++|.+++||++++++..+.
T Consensus       259 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~  338 (560)
T PLN02574        259 LSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVCGEVLKSLKQVSCGAAPLSGKFIQD  338 (560)
T ss_pred             HHHHHHHHHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccccccCccccceEEEEecccCCHHHHHH
Confidence            8754 4555678898888889999999999999999999999999999887543 3456889999999999999999999


Q ss_pred             HH-hc-CCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEE
Q 008535          331 VA-NF-GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVM  408 (562)
Q Consensus       331 ~~-~~-~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~  408 (562)
                      +. .+ +..+++.||+||++.+++.....          ........+|.+.++. .++|++.+++.+++.+  +.|||+
T Consensus       339 ~~~~~~~~~v~~~YG~tE~~~~~~~~~~~----------~~~~~~~~vG~~~~~~-~v~i~d~~~g~~~~~g--~~Gei~  405 (560)
T PLN02574        339 FVQTLPHVDFIQGYGMTESTAVGTRGFNT----------EKLSKYSSVGLLAPNM-QAKVVDWSTGCLLPPG--NCGELW  405 (560)
T ss_pred             HHHHCCCCcEEecccccccCceeecCCCc----------cccCCCCceeeeCCCc-EEEEEeCCCCcCCCCC--CCeEEE
Confidence            87 45 68999999999997654321110          0011234677777777 8888887778877766  679999


Q ss_pred             EcchhhhhhhcCCchhhHhhhc-cceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEe
Q 008535          409 FRANTVMLGYFKNPKATEEAFR-NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVG  487 (562)
Q Consensus       409 v~~~~~~~gy~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~  487 (562)
                      |+|++++.||+++++.+.+.|. +|||+|||+|++|++|.+++.||.+|+||++|.+|+|.+||++|.+||+|.+++|++
T Consensus       406 v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~V~~~~v~~  485 (560)
T PLN02574        406 IQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVTA  485 (560)
T ss_pred             EECcchhhhhcCChhHhhhhccCCCCcccceEEEEECCCeEEEEecchhheEECCEEECHHHHHHHHHhCCCcceEEEEc
Confidence            9999999999999999988874 899999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEee-cccCCCCCcchHHHHhhhhhhhcc
Q 008535          488 KVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFE-DIPVNSTGKVQKFVLRGKVNATAV  558 (562)
Q Consensus       488 ~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~-~lP~t~~GKv~r~~l~~~~~~~~~  558 (562)
                      .+++..++.++++|+..++...+.+++.+++++++++|+.|+.+.++ +||+|++||++|+.|++.+.+.+.
T Consensus       486 ~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~v~~v~~iP~t~~GKi~r~~L~~~~~~~~~  557 (560)
T PLN02574        486 VPDKECGEIPVAFVVRRQGSTLSQEAVINYVAKQVAPYKKVRKVVFVQSIPKSPAGKILRRELKRSLTNSVS  557 (560)
T ss_pred             cccCCCCcceEEEEEeCCCCCCCHHHHHHHHHHhccCcccCcEEEEeeccCCCCcchhhHHHHHHHHhhccc
Confidence            99988889999999988776677889999999999999999988755 599999999999999999877653

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=7e-67  Score=547.56  Aligned_cols=517  Identities=30%  Similarity=0.458  Sum_probs=440.7

Q ss_pred             CCCCCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccc
Q 008535           16 NNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGA   95 (562)
Q Consensus        16 ~~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~   95 (562)
                      .+.+.++.++|.++++.+|+++|+.+.+..+||+||++++.++|+.|.+.|+++|++|+++++|+++++++++||+++|+
T Consensus         2 ~~~~~~l~~~l~~~~~~~p~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~la~~~~G~   81 (521)
T PRK06187          2 QDYPLTIGRILRHGARKHPDKEAVYFDGRRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGA   81 (521)
T ss_pred             CcccCCHHHHHHHHHHHCCCceEEEeCCceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCe
Confidence            35667999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCC
Q 008535           96 VLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSL  175 (562)
Q Consensus        96 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (562)
                      +++++++.++.+++..+++.+++++++++.+..+.+.........      ...++.+++....         .......
T Consensus        82 ~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~---------~~~~~~~  146 (521)
T PRK06187         82 VLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPT------VRTVIVEGDGPAA---------PLAPEVG  146 (521)
T ss_pred             EEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhhccCC------ccEEEEecCcccc---------ccccccc
Confidence            999999999999999999999999999999877776655443221      2233333322210         1112234


Q ss_pred             chhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHH
Q 008535          176 DYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCC  255 (562)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~  255 (562)
                      .+.++....+.... ......+++++++|||||||.||+|.+||+++..........+++..++++++..|++|.+++..
T Consensus       147 ~~~~~~~~~~~~~~-~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  225 (521)
T PRK06187        147 EYEELLAAASDTFD-FPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAWGL  225 (521)
T ss_pred             cHHHHhhcCCccCC-CCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhhCCCCCCEEEEeCCchHHhhHHH
Confidence            45555444332222 22345678999999999999999999999999988888888889999999999999999999988


Q ss_pred             HHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHHh-c
Q 008535          256 TWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVAN-F  334 (562)
Q Consensus       256 ~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~~-~  334 (562)
                      .+.++..|+++++.+..++..+++.++++++|.++++|++++.|..........++++|.++.||++++.+..+.+.+ +
T Consensus       226 ~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~Ge~l~~~~~~~~~~~~  305 (521)
T PRK06187        226 PYLALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDFSSLRLVIYGGAALPPALLREFKEKF  305 (521)
T ss_pred             HHHHHHhCCEEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCccCcchhhEEEEcCcCCCHHHHHHHHHHh
Confidence            777899999999888889999999999999999999999999999988766677899999999999999999999984 4


Q ss_pred             CCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhh
Q 008535          335 GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTV  414 (562)
Q Consensus       335 ~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~  414 (562)
                      ++++++.||+||++++............      ........|.+.++. .++|++. ++.+++.+.++.|||+++|+.+
T Consensus       306 ~~~v~~~YG~tE~~~~~~~~~~~~~~~~------~~~~~~~~G~~~~~~-~~~i~~~-~~~~~~~~~g~~Gel~v~~~~~  377 (521)
T PRK06187        306 GIDLVQGYGMTETSPVVSVLPPEDQLPG------QWTKRRSAGRPLPGV-EARIVDD-DGDELPPDGGEVGEIIVRGPWL  377 (521)
T ss_pred             CcchheeeccCccCcccccCCccccccc------ccccCCccccccCCe-EEEEECC-CCCCCCCCCCCeeEEEEECcch
Confidence            9999999999999876655432111000      011334667777776 8888886 5677777445889999999999


Q ss_pred             hhhhcCCchhhHhhhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCCCCC
Q 008535          415 MLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLK  494 (562)
Q Consensus       415 ~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~  494 (562)
                      +.||+++++.+...|.+|||+|||+++++++|.+++.||.+|+|+.+|.+++|.+||+.|.++++|.+++|++.+++..+
T Consensus       378 ~~~y~~~~~~~~~~~~~~~~~tGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~  457 (521)
T PRK06187        378 MQGYWNRPEATAETIDGGWLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWG  457 (521)
T ss_pred             hhhhcCCHHHHHHHhhCCceeccceEEEcCCCCEEEeecccceEEcCCeEECHHHHHHHHHhCCCceEEEEEeccCCCcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999888888


Q ss_pred             ceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEee-cccCCCCCcchHHHHhhhhhhh
Q 008535          495 EVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFE-DIPVNSTGKVQKFVLRGKVNAT  556 (562)
Q Consensus       495 ~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~-~lP~t~~GKv~r~~l~~~~~~~  556 (562)
                      +.+++++++.++...+.++++++++++++.+.+|..+.++ +||+|++||++|..|++.|.+.
T Consensus       458 ~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~~P~t~~gK~~r~~l~~~~~~~  520 (521)
T PRK06187        458 ERPVAVVVLKPGATLDAKELRAFLRGRLAKFKLPKRIAFVDELPRTSVGKILKRVLREQYAEG  520 (521)
T ss_pred             ceEEEEEEECCCCCCCHHHHHHHHHHhccCCCCceEEEEccCCCCCCCCCeeHHHHHHHHhcC
Confidence            9999999988877778899999999999999999988865 4999999999999999998864

>PRK05857 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.6e-67  Score=551.79  Aligned_cols=505  Identities=19%  Similarity=0.232  Sum_probs=395.9

Q ss_pred             CCChHHHHHHHHHHcCCceEEEEC--CeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccce
Q 008535           19 PLTPIDFLERAAHVYGDATSIIYG--TVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAV   96 (562)
Q Consensus        19 ~~ti~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~   96 (562)
                      +.|+.+.|.++++.+|+++|+.+.  +..+||+||.+++.++|+.|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus        13 ~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~~lA~~~~G~v   92 (540)
T PRK05857         13 PSTVLDRVFEQARQQPEAIALRRCDGTSALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLGAI   92 (540)
T ss_pred             CcchHHHHHHHHhhCCCcEEEeecCCCceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHHHHHHHHcCeE
Confidence            448999999999999999999853  367999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCc
Q 008535           97 LSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLD  176 (562)
Q Consensus        97 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (562)
                      ++|+++.++.+++.++++.++++++|++...............       ...++.++.....        .      . 
T Consensus        93 ~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~--------~------~-  150 (540)
T PRK05857         93 AVMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVPEALH-------SIPVIAVDIAAVT--------R------E-  150 (540)
T ss_pred             EEecCccCCHHHHHHHHHhcCCceEEEeccchhcccccccccc-------ccceeEeeccccc--------c------c-
Confidence            9999999999999999999999999999765322111111000       0111222111000        0      0 


Q ss_pred             hhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHH----hhcCCCCCCeeeeecccccchh
Q 008535          177 YNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQI----SRCDVRDMPVFLWTLDMFRCNG  252 (562)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~----~~~~~~~~~~~l~~~pl~~~~g  252 (562)
                      +.......  .........++++++++|||||||.||||.++|+++.++.....    ..+.+..+++.+..+|++|.++
T Consensus       151 ~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~  228 (540)
T PRK05857        151 SEHSLDAA--SLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGG  228 (540)
T ss_pred             cccccccc--ccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCCccccch
Confidence            00000000  00011123567999999999999999999999999876544322    1235667789999999999999


Q ss_pred             hHHHHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHH
Q 008535          253 WCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVA  332 (562)
Q Consensus       253 l~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~  332 (562)
                      +...+.++..|+++++ ...++..+++.++++++++++++|.+++.|+.........++++|.+++||++++....+.++
T Consensus       229 l~~~~~~l~~G~~~v~-~~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~  307 (540)
T PRK05857        229 LWWILTCLMHGGLCVT-GGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSANATVPSLRLVGYGGSRAIAADVRFIE  307 (540)
T ss_pred             HHHHHHHhhcceeEEe-cCCChhHHHHHHHhcCcceEEeChHHHHHHHhccccCCCcCccceEEEEcCccCCchhHHHHH
Confidence            9888888889998765 556889999999999999999999999999887765566788999999999999887776666


Q ss_pred             hcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccC---CCCceeEEEE
Q 008535          333 NFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPH---DGKTLGEVMF  409 (562)
Q Consensus       333 ~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~---~~~~~Gel~v  409 (562)
                      .++.++++.||+||++...........       .........+|.+.++. .++|++.+...+.+.   ..++.|||+|
T Consensus       308 ~~g~~i~~~YG~TE~~~~~~~~~~~~~-------~~~~~~~~~~G~~~~g~-~v~i~d~~~~~~~~~~~~~~~~~Gel~v  379 (540)
T PRK05857        308 ATGVRTAQVYGLSETGCTALCLPTDDG-------SIVKIEAGAVGRPYPGV-DVYLAATDGIGPTAPGAGPSASFGTLWI  379 (540)
T ss_pred             HhCCeeecccCCCcCCceeeecccccc-------cccccccCCcCcccCCc-EEEEECccccCccccccCCCCCcceEEE
Confidence            779999999999998754332211000       00011234677777777 777777643323322   2246799999


Q ss_pred             cchhhhhhhcCCchhhHhhhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeee
Q 008535          410 RANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKV  489 (562)
Q Consensus       410 ~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~  489 (562)
                      +|+.++.||+++++.+.+.|.+|||+|||+|++|++|++++.||.+|+||++|.+|+|.+||.+|..+|+|.+++|++.+
T Consensus       380 ~g~~~~~GY~~~~~~t~~~~~~g~~~TGDlg~~d~~g~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~  459 (540)
T PRK05857        380 KSPANMLGYWNNPERTAEVLIDGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIP  459 (540)
T ss_pred             eCcchhhhhhCCccchhhhcCCCceeccceEEEcCCceEEEeccccccEecCCEEECHHHHHHHHHhCCCeeEEEEEecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCceeEEEEEeCCCCCC-CH----HHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhh
Q 008535          490 DDQLKEVPVAFVKLKEGREA-SP----EELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNAT  556 (562)
Q Consensus       490 ~~~~~~~~v~~v~~~~~~~~-~~----~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~  556 (562)
                      +...++.++++++..+.... ..    +.+.+.+++.++++++|+.+.+.+ ||+|++||++|+.|++.+.+.
T Consensus       460 ~~~~~~~~~~~vv~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~P~~v~~~~~iP~t~~GKi~r~~l~~~~~~~  532 (540)
T PRK05857        460 DEEFGALVGLAVVASAELDESAARALKHTIAARFRRESEPMARPSTIVIVTDIPRTQSGKVMRASLAAAATAD  532 (540)
T ss_pred             ccccccceEEEEEeCCCCChhhHHHHHHHHHHHHHhhhccccCCeEEEEhhcCCCCCCcceeHHHHHHhhhhc
Confidence            98888888888876543221 12    344456667799999999988665 999999999999999998754

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=4.1e-67  Score=543.41  Aligned_cols=480  Identities=27%  Similarity=0.405  Sum_probs=406.9

Q ss_pred             CChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEEe
Q 008535           20 LTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSA   99 (562)
Q Consensus        20 ~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~   99 (562)
                      +|+.++|+++++.+|+++|+.+.++.+||+||.+++.++|++|.+.|+++||+|+++++|+++++++++||+++|++++|
T Consensus         2 ~~~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~   81 (483)
T PRK03640          2 ETMPNWLKQRAFLTPDRTAIEFEEKKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVL   81 (483)
T ss_pred             CcHHHHHHHHHHhCCCceEEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhCCcEEEe
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCchhh
Q 008535          100 LNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYND  179 (562)
Q Consensus       100 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (562)
                      +++..+.+++..+++.++++.++++............                                      ..+.+
T Consensus        82 i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~--------------------------------------~~~~~  123 (483)
T PRK03640         82 LNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGIS--------------------------------------VKFAE  123 (483)
T ss_pred             cCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhcc--------------------------------------ccHHH
Confidence            9999999999999999999999998765443221100                                      00111


Q ss_pred             hhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHHHHHh
Q 008535          180 LLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAM  259 (562)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~~~~~  259 (562)
                      +...............++++++++|||||||.||+|.+||+++..........+++..+|++++.+|++|.+++..++.+
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~  203 (483)
T PRK03640        124 LMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGLTEDDCWLAAVPIFHISGLSILMRS  203 (483)
T ss_pred             HhhcccccCCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhcCCCcCcEEEEecCHHHHHHHHHHHHH
Confidence            11111111111112346789999999999999999999999998887777777889999999999999999999888888


Q ss_pred             HhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHHhcCCeee
Q 008535          260 AAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVANFGFNIR  339 (562)
Q Consensus       260 ~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~~~~~~l~  339 (562)
                      +..|+++++.+..++..+++.++++++|++.++|.++..|....... ....++|.+++||+++++..++.+++++++++
T Consensus       204 l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~  282 (483)
T PRK03640        204 VIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG-TYPSSFRCMLLGGGPAPKPLLEQCKEKGIPVY  282 (483)
T ss_pred             HhcCCEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc-ccCCcceEEEEcCCCCCHHHHHHHHHhCCCee
Confidence            99999999998899999999999999999999999999998764333 33468999999999999999999988899999


Q ss_pred             ccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhhhhhhc
Q 008535          340 HAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYF  419 (562)
Q Consensus       340 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~  419 (562)
                      +.||+||++..+......          ........+|.|.++. .+++.+.  +.+++.+  +.|||+++|+.++.||+
T Consensus       283 ~~YG~tE~~~~~~~~~~~----------~~~~~~~~vG~p~~~~-~~~i~~~--~~~~~~g--~~Gel~v~g~~~~~gy~  347 (483)
T PRK03640        283 QSYGMTETASQIVTLSPE----------DALTKLGSAGKPLFPC-ELKIEKD--GVVVPPF--EEGEIVVKGPNVTKGYL  347 (483)
T ss_pred             eeeccCcccccccccCcc----------cccccCCCcccccCCc-EEEEecC--CCcCCCC--CceEEEEECcchhhhhc
Confidence            999999987543322110          0111224566666555 5555553  4555554  67999999999999999


Q ss_pred             CCchhhHhhhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCCCCCceeEE
Q 008535          420 KNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVA  499 (562)
Q Consensus       420 ~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~  499 (562)
                      ++++.+...|.+|||+|||++++++||.+++.||.+|++|.+|.+++|.+||+.+.++++|.++++++.+++..++.+++
T Consensus       348 ~~~~~~~~~~~~~~~~tGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~  427 (483)
T PRK03640        348 NREDATRETFQDGWFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVA  427 (483)
T ss_pred             CCHHHHHHHHhcCCeeccceEEEcCCCCEEEeecccCeEEeCCEEECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988887888888


Q ss_pred             EEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhh
Q 008535          500 FVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNA  555 (562)
Q Consensus       500 ~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~  555 (562)
                      +++..  ...+.+++++++++.++.+++|..+++++ ||+|++||++|++|++.+.+
T Consensus       428 ~~~~~--~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~iP~t~~gK~~r~~l~~~~~~  482 (483)
T PRK03640        428 FVVKS--GEVTEEELRHFCEEKLAKYKVPKRFYFVEELPRNASGKLLRHELKQLVEE  482 (483)
T ss_pred             EEEeC--CCCCHHHHHHHHHHhccCCCCCcEEEEeCCCCCCCccceeHHHHHHHHhh
Confidence            88754  34678899999999999999999988655 99999999999999998874

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=6.5e-67  Score=547.91  Aligned_cols=504  Identities=24%  Similarity=0.353  Sum_probs=418.4

Q ss_pred             CCChHHHHHHHHHHcCCceEEEEC--CeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccce
Q 008535           19 PLTPIDFLERAAHVYGDATSIIYG--TVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAV   96 (562)
Q Consensus        19 ~~ti~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~   96 (562)
                      ..|+.+++.++++.+|+++|+.+.  ++++||.||+++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus        22 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~la~~~~G~~  101 (537)
T PLN02246         22 HLPLHDYCFERLSEFSDRPCLIDGATGRVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAV  101 (537)
T ss_pred             CCcHHHHHHHHHHhCCCCeEEEecCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHHcCEE
Confidence            458999999999999999999875  478999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCc
Q 008535           97 LSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLD  176 (562)
Q Consensus        97 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (562)
                      ++|+++.++.+++..+++.+++++++++....+.+.......        ...++.++...              .+...
T Consensus       102 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~--------~~~~i~~~~~~--------------~~~~~  159 (537)
T PLN02246        102 TTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAEDD--------GVTVVTIDDPP--------------EGCLH  159 (537)
T ss_pred             EecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhcC--------CceEEEeCCCC--------------CCcee
Confidence            999999999999999999999999999987766554432210        11222222111              01122


Q ss_pred             hhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHh----hcCCCCCCeeeeecccccchh
Q 008535          177 YNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQIS----RCDVRDMPVFLWTLDMFRCNG  252 (562)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~----~~~~~~~~~~l~~~pl~~~~g  252 (562)
                      +.++........ ......++++++++|||||||.||+|.++|+++.........    .+.+..+|++++..|++|.++
T Consensus       160 ~~~~~~~~~~~~-~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~  238 (537)
T PLN02246        160 FSELTQADENEL-PEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYS  238 (537)
T ss_pred             HHHHhcCCCCCC-CCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeechHHHHH
Confidence            333332211111 112245689999999999999999999999998877665433    467889999999999999999


Q ss_pred             hHH-HHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHH
Q 008535          253 WCC-TWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQV  331 (562)
Q Consensus       253 l~~-~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~  331 (562)
                      +.. ++.++..|+++++.+.+++..+++.++++++|++.++|.++..|++........++++|.+++||++++++..+.+
T Consensus       239 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~  318 (537)
T PLN02246        239 LNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVEKYDLSSIRMVLSGAAPLGKELEDAF  318 (537)
T ss_pred             HHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCccccccCccceeEEEEecCcCCHHHHHHH
Confidence            865 5566788999999888999999999999999999999999999988765555678899999999999999999999


Q ss_pred             Hh-c-CCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEE
Q 008535          332 AN-F-GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMF  409 (562)
Q Consensus       332 ~~-~-~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v  409 (562)
                      ++ + +..+++.||+||++.+++.+.....       .........+|.+.++. .+++++.+++.+++.+  +.|||++
T Consensus       319 ~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~-------~~~~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g--~~Gel~v  388 (537)
T PLN02246        319 RAKLPNAVLGQGYGMTEAGPVLAMCLAFAK-------EPFPVKSGSCGTVVRNA-ELKIVDPETGASLPRN--QPGEICI  388 (537)
T ss_pred             HHHcCCCeEeccccccccCcccccccccCC-------CCccccCCccccccCCc-EEEEecCCCCCcCCCC--CceEEEE
Confidence            85 4 6789999999999765543211000       00111234567777776 8888887677777776  6799999


Q ss_pred             cchhhhhhhcCCchhhHhhh-ccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEee
Q 008535          410 RANTVMLGYFKNPKATEEAF-RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGK  488 (562)
Q Consensus       410 ~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~  488 (562)
                      +|+.++.||+++++.+...| .+|||+|||+|+++++|.+++.||.+|+|+.+|.+|+|.+||+.+.++|+|.+++|++.
T Consensus       389 ~g~~~~~GY~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~dd~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~  468 (537)
T PLN02246        389 RGPQIMKGYLNDPEATANTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLISHPSIADAAVVPM  468 (537)
T ss_pred             ECCchhccccCCchhhhhcccCCCCeeecceEEEeCCCeEEEEecccceEEECCEEECcHHHHHHHHhCCCeeEEEEEcc
Confidence            99999999999999998888 48999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEee-cccCCCCCcchHHHHhhhhhh
Q 008535          489 VDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFE-DIPVNSTGKVQKFVLRGKVNA  555 (562)
Q Consensus       489 ~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~-~lP~t~~GKv~r~~l~~~~~~  555 (562)
                      +++..++.++++++..++...+.++++++++++++.++.|..+.+. +||+|++||++|++|++.+.+
T Consensus       469 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~~~P~t~~GKi~r~~L~~~~~~  536 (537)
T PLN02246        469 KDEVAGEVPVAFVVRSNGSEITEDEIKQFVAKQVVFYKRIHKVFFVDSIPKAPSGKILRKDLRAKLAA  536 (537)
T ss_pred             cCccCCceeEEEEEeCCCCCCCHHHHHHHHHhhCcCccccceEEEeccCCCCCcchhhHHHHHHHHhc
Confidence            9888888999999988776677889999999999999999887754 599999999999999998754

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=7.9e-67  Score=549.69  Aligned_cols=513  Identities=21%  Similarity=0.318  Sum_probs=411.8

Q ss_pred             CChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEE
Q 008535           20 LTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQ-LKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLS   98 (562)
Q Consensus        20 ~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~-~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v   98 (562)
                      .|+.++|++.++.+|+++|+++.++.+||+||++++.++|+.|.+ .|+++||+|+++++|++++++++|||+++|++++
T Consensus        24 ~~~~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~la~~~~Ga~~v  103 (562)
T PRK05677         24 PNIQAVLKQSCQRFADKPAFSNLGKTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLIVV  103 (562)
T ss_pred             CcHHHHHHHHHHhCCCCeeEEECCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEe
Confidence            489999999999999999999988999999999999999999997 6999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCc-------------cc
Q 008535           99 ALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPST-------------CS  165 (562)
Q Consensus        99 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~  165 (562)
                      |++|.++.+++.+++++++++++|++....+.+........       .+.++....... .+..             ..
T Consensus       104 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  175 (562)
T PRK05677        104 NTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPKTG-------VKHVIVTEVADM-LPPLKRLLINAVVKHVKKM  175 (562)
T ss_pred             ecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhccC-------cceeEEeccccc-ccchhhhhcccchhhcccc
Confidence            99999999999999999999999998776655444322110       111211110000 0000             00


Q ss_pred             ccCCCCCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcC--CCC-CCeee
Q 008535          166 VANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCD--VRD-MPVFL  242 (562)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~--~~~-~~~~l  242 (562)
                      .......+...+.+.+..............++++++++|||||||.||||.++|+++..........+.  +.. .+.++
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~  255 (562)
T PRK05677        176 VPAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGCEILI  255 (562)
T ss_pred             ccccCCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCCCCccEEE
Confidence            000000112233333332221111122345689999999999999999999999998776655544432  333 36789


Q ss_pred             eecccccchhhHH-HHHhHhhceEEEEec-cCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeC
Q 008535          243 WTLDMFRCNGWCC-TWAMAAVGGINVCIR-TVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAG  320 (562)
Q Consensus       243 ~~~pl~~~~gl~~-~~~~~~~g~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g  320 (562)
                      +.+|++|.+++.. .+..+..|++.++.+ ..++..+++.++++++|.++++|.++..++.........++++|.+++||
T Consensus       256 ~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~v~~gG  335 (562)
T PRK05677        256 APLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLDFSALKLTLSGG  335 (562)
T ss_pred             EcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcccccCChhhceEEEEcC
Confidence            9999999999864 445556677666554 47899999999999999999999999999876544445677999999999


Q ss_pred             CCChHHHHHHHHh-cCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccC
Q 008535          321 VLPTIEVLEQVAN-FGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPH  399 (562)
Q Consensus       321 ~~l~~~~~~~~~~-~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~  399 (562)
                      ++++++..+.|++ ++.++++.||+||+++++......            ......+|.+.++. .++++++ ++..++.
T Consensus       336 ~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~------------~~~~~~vG~~~~~~-~v~i~d~-~~~~~~~  401 (562)
T PRK05677        336 MALQLATAERWKEVTGCAICEGYGMTETSPVVSVNPSQ------------AIQVGTIGIPVPST-LCKVIDD-DGNELPL  401 (562)
T ss_pred             ccCCHHHHHHHHHHcCCCeeccCCccccCcceeecCcc------------CCCCCccCccCCCC-EEEEECC-CCCCCCC
Confidence            9999999999884 589999999999987665543210            11224577777777 8888886 5677776


Q ss_pred             CCCceeEEEEcchhhhhhhcCCchhhHhhhc-cceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCC
Q 008535          400 DGKTLGEVMFRANTVMLGYFKNPKATEEAFR-NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNP  478 (562)
Q Consensus       400 ~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~  478 (562)
                      |  +.|||+++|+.++.||+++++.+...|. +|||+|||+|++|++|.+++.||.+|+|+++|.+|+|.+||+.|.+++
T Consensus       402 g--~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~i~p~eiE~~l~~~~  479 (562)
T PRK05677        402 G--EVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAALP  479 (562)
T ss_pred             C--CCeEEEEecCccchhhcCCchhhhhccCCCCcccccceEEECCCCcEEEEecCcCeEEeCCEEECHHHHHHHHHhCC
Confidence            6  6799999999999999999999998885 899999999999999999999999999999999999999999999999


Q ss_pred             CceeEEEEeeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhh
Q 008535          479 KVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNAT  556 (562)
Q Consensus       479 ~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~  556 (562)
                      +|.+++|++++++..++.+++++++.++...+.++++++++++++.|++|..+++++ ||+|++||++|++|++.+..+
T Consensus       480 ~v~~~~v~g~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~sGKi~r~~L~~~~~~~  558 (562)
T PRK05677        480 GVLQCAAIGVPDEKSGEAIKVFVVVKPGETLTKEQVMEHMRANLTGYKVPKAVEFRDELPTTNVGKILRRELRDEELKK  558 (562)
T ss_pred             CccEEEEEeccCccCCceEEEEEEeCCCCCCCHHHHHHHHHHhhhhccCCcEEEEeccCCCCCcccccHHHHHHHHHHh
Confidence            999999999999888899999998877766788999999999999999999988665 999999999999999876544

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=1.3e-67  Score=561.77  Aligned_cols=513  Identities=20%  Similarity=0.270  Sum_probs=389.2

Q ss_pred             CCChHHHHHHHHHHcCCceEEEEC-------C--eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Q 008535           19 PLTPIDFLERAAHVYGDATSIIYG-------T--VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFA   89 (562)
Q Consensus        19 ~~ti~~~l~~~a~~~p~~~a~~~~-------~--~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA   89 (562)
                      ..|+.++|++.++.+|+++|+...       +  +.+||+||.+++.++|.+|.+.|+++||+|+++++|+++|+++++|
T Consensus        42 ~~t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA  121 (660)
T PLN02861         42 IDSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (660)
T ss_pred             CCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            348999999999999999999641       1  4799999999999999999999999999999999999999999999


Q ss_pred             hhhccceEEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCC
Q 008535           90 VPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANN  169 (562)
Q Consensus        90 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (562)
                      |+++|++++|+++.++.+++.+++++++++++|++....+.+..........     ...++.+++.....   ......
T Consensus       122 ~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~~~~~~~~~-----l~~ii~~~~~~~~~---~~~~~~  193 (660)
T PLN02861        122 CNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSN-----LKTIVSFGDVSSEQ---KEEAEE  193 (660)
T ss_pred             HHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHHhhhhCCCC-----CEEEEEECCCChhh---hhhhhc
Confidence            9999999999999999999999999999999999876554443332221110     23344443211000   000000


Q ss_pred             CCCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcC-----CCCCCeeeee
Q 008535          170 FPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCD-----VRDMPVFLWT  244 (562)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~-----~~~~~~~l~~  244 (562)
                      ......++.++........ ...+..++|+++|+|||||||.||||++||+++..........+.     +.++|++++.
T Consensus       194 ~~~~~~~~~~~~~~~~~~~-~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~  272 (660)
T PLN02861        194 LGVSCFSWEEFSLMGSLDC-ELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSY  272 (660)
T ss_pred             CCcEEEEHHHHHHhCcccC-CCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCCCEEEEE
Confidence            0011234555544332111 112345789999999999999999999999999887766555443     4678999999


Q ss_pred             cccccchhhHHHHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccc--------------------
Q 008535          245 LDMFRCNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASA--------------------  304 (562)
Q Consensus       245 ~pl~~~~gl~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~--------------------  304 (562)
                      +|++|.+++...+.++..|+++++. ..++..+++.|++++||+++++|.++..|.+...                    
T Consensus       273 lPl~H~~~~~~~~~~l~~G~~v~~~-~~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~  351 (660)
T PLN02861        273 LPLAHVYDQVIETYCISKGASIGFW-QGDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNY  351 (660)
T ss_pred             CcHHHHHHHHHHHHHHHhCCEEEEe-CCCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            9999999987766778888888776 4689999999999999999999999998864100                    


Q ss_pred             -----------------ccc-------ccc-cceEEEEEeCCCChHHHHHHHHhcCC-eeeccccCccccCcccccccCC
Q 008535          305 -----------------SDQ-------NQL-QRKVIIVIAGVLPTIEVLEQVANFGF-NIRHAYGMTEVLGPAIVRQWKP  358 (562)
Q Consensus       305 -----------------~~~-------~~l-~~l~~i~~~g~~l~~~~~~~~~~~~~-~l~~~YG~tE~~~~~~~~~~~~  358 (562)
                                       ...       ..+ +++|.+++||++++++..+.++.++. .+++.||+||+++.++..... 
T Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~-  430 (660)
T PLN02861        352 KLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLRVTSCSVLSQGYGLTESCGGCFTSIAN-  430 (660)
T ss_pred             HHHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHcCCCeeEecchhhhhhceeecccc-
Confidence                             000       012 57999999999999998665556654 799999999997655432110 


Q ss_pred             CCCCCcCCccccccccccCccccccccceeccc-CCcccccCCCCceeEEEEcchhhhhhhcCCchhhHhhhccceeeeC
Q 008535          359 EGESSALDHEHEMTKHREGLNNLLIQGVDVKQQ-NTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTG  437 (562)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~-~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TG  437 (562)
                                .......+|.|.++. .+++.+. +.+.... ..++.|||+|+||+++.|||++|+.|.+.|.+|||+||
T Consensus       431 ----------~~~~~gsvG~p~p~~-ev~i~d~~~~g~~~~-~~~~~GEi~vrGp~v~~GY~~~pe~T~~~f~dGw~~TG  498 (660)
T PLN02861        431 ----------VFSMVGTVGVPMTTI-EARLESVPEMGYDAL-SDVPRGEICLRGNTLFSGYHKRQDLTEEVLIDGWFHTG  498 (660)
T ss_pred             ----------cCCCCCCccCccCce-EEEEEEccccCcccC-CCCCceeEEEcCCcccccccCCHHHHHhhhhccCcccC
Confidence                      011234678887777 7788763 2221111 12246999999999999999999999999999999999


Q ss_pred             ceeEEcCCCcEEEeccccceeec-CCeEechHHHHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCC--------C-
Q 008535          438 DLAVRNPDGYVQMKDRRKDIIIS-GAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEG--------R-  507 (562)
Q Consensus       438 D~~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~--------~-  507 (562)
                      |+|++|+||+++|.||.||+||. +|++|+|.+||++|.++|.|.+++|++.+   .++.++++|+++..        . 
T Consensus       499 Dlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~---~~~~~~A~vv~~~~~l~~~~~~~~  575 (660)
T PLN02861        499 DIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNS---FESFLVAVVVPDRQALEDWAANNN  575 (660)
T ss_pred             ceEEECCCCcEEEEeccccceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecC---CcceeEEEEEcCHHHHHHHHHHcC
Confidence            99999999999999999999995 89999999999999999999999999875   24568899887532        0 


Q ss_pred             -CCCH----------HHHHHHHhc-----cCCCCCCCcEEEeec--c-----cCCCCCcchHHHHhhhhhhhc
Q 008535          508 -EASP----------EELVTFCGD-----ELPSCMVPRAIFFED--I-----PVNSTGKVQKFVLRGKVNATA  557 (562)
Q Consensus       508 -~~~~----------~~l~~~~~~-----~l~~~~~p~~i~~~~--l-----P~t~~GKv~r~~l~~~~~~~~  557 (562)
                       ..+.          ..+.+.+++     .++.+..++.+.+.+  +     .+|+++|++|+.+.+.|.+.-
T Consensus       576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~i~~~~l~~~~ft~~ng~lT~t~K~~R~~i~~~y~~~I  648 (660)
T PLN02861        576 KTGDFKSLCKNLKARKYILDELNSTGKKLQLRGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLKYYKDCI  648 (660)
T ss_pred             CCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCcccCcCCHHHhhhHHHHHHHHHHHH
Confidence             0111          122333332     478888888888744  6     799999999999999988764

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.8e-67  Score=552.29  Aligned_cols=503  Identities=26%  Similarity=0.356  Sum_probs=412.6

Q ss_pred             CCChH-HHHHHHHH-HcCCceEEEECC----eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhh
Q 008535           19 PLTPI-DFLERAAH-VYGDATSIIYGT----VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPM   92 (562)
Q Consensus        19 ~~ti~-~~l~~~a~-~~p~~~a~~~~~----~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~   92 (562)
                      ..|+. +++++++. ..|+++|+.+.+    +++||+||.+++.++|.+|.+.|+++||+|+++++|+++++++++||++
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~  120 (570)
T PRK04319         41 KVNIAYEAIDRHADGGRKDKVALRYLDASRKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALK  120 (570)
T ss_pred             ceeHHHHHHHHhhccCCCCceEEEEECCCCceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence            34555 67888776 479999998743    6899999999999999999999999999999999999999999999999


Q ss_pred             ccceEEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCC
Q 008535           93 AGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPS  172 (562)
Q Consensus        93 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (562)
                      +|++++|+++.++.+++.++++.+++++++++..........  .++      ....++.+++...           ...
T Consensus       121 ~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~--~~~------~~~~~~~~~~~~~-----------~~~  181 (570)
T PRK04319        121 NGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPAD--DLP------SLKHVLLVGEDVE-----------EGP  181 (570)
T ss_pred             cCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccchh--cCC------CceEEEEECCCcC-----------CCc
Confidence            999999999999999999999999999999987654332210  110      0222333222110           011


Q ss_pred             CCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchh
Q 008535          173 GSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNG  252 (562)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g  252 (562)
                      +..++.+.....+... ...+..++++++++|||||||.||||.++|+++..+.......+++.++|++++..|++|.+|
T Consensus       182 ~~~~~~~~~~~~~~~~-~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g  260 (570)
T PRK04319        182 GTLDFNALMEQASDEF-DIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHEDDVYWCTADPGWVTG  260 (570)
T ss_pred             CccCHHHHHhhcCCcC-CccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCCCceEEecCChHHhhC
Confidence            2244555443332221 112345679999999999999999999999999988888888889999999999999999888


Q ss_pred             hH-HHHHhHhhceEEEEec-cCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccc--cccccccceEEEEEeCCCChHHHH
Q 008535          253 WC-CTWAMAAVGGINVCIR-TVSAKIIFDSILIHKVTHLCGQPRILNMIANASA--SDQNQLQRKVIIVIAGVLPTIEVL  328 (562)
Q Consensus       253 l~-~~~~~~~~g~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~--~~~~~l~~l~~i~~~g~~l~~~~~  328 (562)
                      +. .++.++..|+++++.. .+++..+++.++++++|+++++|.+++.|++...  .....++++|.++++|+++++++.
T Consensus       261 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~  340 (570)
T PRK04319        261 TSYGIFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKYDLSSLRHILSVGEPLNPEVV  340 (570)
T ss_pred             chHHHHHHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcccccCCcccceEEEEcccCCCHHHH
Confidence            65 4677788899888765 5899999999999999999999999999987643  233467899999999999999999


Q ss_pred             HHHH-hcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEE
Q 008535          329 EQVA-NFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEV  407 (562)
Q Consensus       329 ~~~~-~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel  407 (562)
                      ++++ .++.++++.||+||+++.++.....           .......+|.|.++. .++|++. ++.+++.|  +.|||
T Consensus       341 ~~~~~~~g~~i~~~YG~tE~~~~~~~~~~~-----------~~~~~~~~G~p~~g~-~~~i~d~-~~~~~~~g--~~Gel  405 (570)
T PRK04319        341 RWGMKVFGLPIHDNWWMTETGGIMIANYPA-----------MDIKPGSMGKPLPGI-EAAIVDD-QGNELPPN--RMGNL  405 (570)
T ss_pred             HHHHHHhCCCeEeceeecccCCEEEecCCC-----------CCCCCCcCcCCCCCC-EEEEECC-CCCCCCCC--CceEE
Confidence            9988 4689999999999998765432110           011234677777776 7788775 56666555  78999


Q ss_pred             EEcc--hhhhhhhcCCchhhHhhhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEE
Q 008535          408 MFRA--NTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAV  485 (562)
Q Consensus       408 ~v~~--~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v  485 (562)
                      +++|  +.++.||++++..+...|.+|||+|||+|+++++|.+++.||.+|+|+.+|.+|+|.+||+.+.++|.|.+++|
T Consensus       406 ~i~~~~~~~~~GY~~~~~~~~~~~~~gw~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~V~~~~v  485 (570)
T PRK04319        406 AIKKGWPSMMRGIWNNPEKYESYFAGDWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLMEHPAVAEAGV  485 (570)
T ss_pred             EEcCCCChHHhHhcCCHHHhhhhhcCCceEeCcEEEECCCeeEEEEecCCCEEEECCEEECHHHHHHHHhhCCCeeecce
Confidence            9997  89999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeeCCCCCceeEEEEEeCCCCCCC---HHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhh
Q 008535          486 VGKVDDQLKEVPVAFVKLKEGREAS---PEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNAT  556 (562)
Q Consensus       486 ~~~~~~~~~~~~v~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~  556 (562)
                      ++.+++..++.+++++++.++....   .++++++++++++.|++|+.+++++ ||+|++||++|++|+++..+.
T Consensus       486 ~g~~~~~~g~~~~a~v~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKv~r~~L~~~~~~~  560 (570)
T PRK04319        486 IGKPDPVRGEIIKAFVALRPGYEPSEELKEEIRGFVKKGLGAHAAPREIEFKDKLPKTRSGKIMRRVLKAWELGL  560 (570)
T ss_pred             ecccCcCCceEEEEEEEECCCCCCCHHHHHHHHHHHHHhcccccCCcEEEEeCCCCCCCchhhhHHHHHHHHhCC
Confidence            9999998899999999987764433   3689999999999999999988665 999999999999999986543

>PRK08316 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.5e-66  Score=543.39  Aligned_cols=508  Identities=29%  Similarity=0.437  Sum_probs=428.1

Q ss_pred             CCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEE
Q 008535           19 PLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLS   98 (562)
Q Consensus        19 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v   98 (562)
                      ..++.++|.+.++.+|+++|+.+.+..+||+||.+.+.++|..|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus        10 ~~~l~~~l~~~a~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a~~~~G~~~v   89 (523)
T PRK08316         10 RQTIGDILRRSARRYPDKTALVFGDRSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVHV   89 (523)
T ss_pred             CCCHHHHHHHHHHHCCCCeEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEE
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCchh
Q 008535           99 ALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYN  178 (562)
Q Consensus        99 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (562)
                      |+++..+.+++..+++.+++++++++....+.+..........     ...+.....           ..........+.
T Consensus        90 ~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-----------~~~~~~~~~~~~  153 (523)
T PRK08316         90 PVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPVD-----TLILSLVLG-----------GREAPGGWLDFA  153 (523)
T ss_pred             ecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcCcc-----ceeeeeccc-----------ccccccchhhHH
Confidence            9999999999999999999999999988777665543322100     000000000           000111223444


Q ss_pred             hhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHHH-H
Q 008535          179 DLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCT-W  257 (562)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~~-~  257 (562)
                      ++....+... ...+...+++++++|||||||.||+|.+||+++..........+++..++++++.+|++|.+++... .
T Consensus       154 ~~~~~~~~~~-~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~  232 (523)
T PRK08316        154 DWAEAGSVAE-PDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDVFLG  232 (523)
T ss_pred             HHHhcCCCcc-CccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCCceEEEccCCchhhhHHHHHH
Confidence            4443322221 2223456799999999999999999999999999888888888899999999999999999998654 4


Q ss_pred             HhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHHh-c-C
Q 008535          258 AMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVAN-F-G  335 (562)
Q Consensus       258 ~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~~-~-~  335 (562)
                      .++..|+++++.+..++..+++.++++++|++.++|.++..+++........+++++.+++||+.++.+..+.+++ + +
T Consensus       233 ~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~  312 (523)
T PRK08316        233 PYLYVGATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPDFDTRDLSSLRKGYYGASIMPVEVLKELRERLPG  312 (523)
T ss_pred             HHHhcCceEEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcccccCCcccceEEEEcCCcCCHHHHHHHHHHcCC
Confidence            4567889998888889999999999999999999999999999887666677889999999999999999999985 4 7


Q ss_pred             CeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhhh
Q 008535          336 FNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVM  415 (562)
Q Consensus       336 ~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~  415 (562)
                      .++++.||+||++.++.......          .......+|.+.++. .++|.+. ++.+++.+  +.|||+++|+.++
T Consensus       313 ~~~~~~YG~tE~~~~~~~~~~~~----------~~~~~~~~G~~~~~~-~~~i~~~-~~~~~~~g--~~Gei~v~~~~~~  378 (523)
T PRK08316        313 LRFYNCYGQTEIAPLATVLGPEE----------HLRRPGSAGRPVLNV-ETRVVDD-DGNDVAPG--EVGEIVHRSPQLM  378 (523)
T ss_pred             CceeeeecccccCccccccCccc----------cccccCCcccCCCCc-EEEEEcC-CCCCCCCC--CcceEEEECCchh
Confidence            89999999999987665532111          111224567777776 7778775 56777765  7799999999999


Q ss_pred             hhhcCCchhhHhhhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCCCCCc
Q 008535          416 LGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKE  495 (562)
Q Consensus       416 ~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~  495 (562)
                      .||+++++.+...|.+|||+|||+|++++||.+++.||.+|+|+++|.+++|.+||+.+.++++|.+++|++.+++..++
T Consensus       379 ~~y~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~i~gR~~~~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~  458 (523)
T PRK08316        379 LGYWDDPEKTAEAFRGGWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIE  458 (523)
T ss_pred             hhhcCCHHHHHHHhhCCCeeccceEEEcCCceEEEecccccEEEeCCeEECHHHHHHHHHhCCChheEeEecccCcccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998889


Q ss_pred             eeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEee-cccCCCCCcchHHHHhhhhhhhc
Q 008535          496 VPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFE-DIPVNSTGKVQKFVLRGKVNATA  557 (562)
Q Consensus       496 ~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~-~lP~t~~GKv~r~~l~~~~~~~~  557 (562)
                      .++++++..++.....+++.++++++++.+++|..+.++ ++|+|++||++|++|++.|.+.-
T Consensus       459 ~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~p~t~~gKi~r~~l~~~~~~~~  521 (523)
T PRK08316        459 AVTAVVVPKAGATVTEDELIAHCRARLAGFKVPKRVIFVDELPRNPSGKILKRELRERYAGAF  521 (523)
T ss_pred             eEEEEEEECCCCCCCHHHHHHHHHHhcccCCCCcEEEEecCCCCCCccceeHHHHHHHHHhhc
Confidence            999999988776677889999999999999999988855 59999999999999999997653

>PRK07638 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.3e-67  Score=541.00  Aligned_cols=483  Identities=19%  Similarity=0.274  Sum_probs=407.0

Q ss_pred             CChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEEe
Q 008535           20 LTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSA   99 (562)
Q Consensus        20 ~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~   99 (562)
                      |++.+.|+++++.+|+++|+.+.+.++||.||.+++.++|++|.+.|. +||+|+++++|+++++++++||+++|++++|
T Consensus         1 ~~~~~~~~~~a~~~p~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~   79 (487)
T PRK07638          1 MGITKEYKKHASLQPNKIAIKENDRVLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGAAMAGWTCVP   79 (487)
T ss_pred             CChHHHHHHHHHhCCCCeEEecCCcEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHHHHcCeEEEe
Confidence            578999999999999999999999999999999999999999999984 7999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCchhh
Q 008535          100 LNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYND  179 (562)
Q Consensus       100 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (562)
                      +++.++.+++.++++.+++++++++......+...            ...++.+++                     +..
T Consensus        80 l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~------------~~~~~~~~~---------------------~~~  126 (487)
T PRK07638         80 LDIKWKQDELKERLAISNADMIVTERYKLNDLPDE------------EGRVIEIDE---------------------WKR  126 (487)
T ss_pred             cCccCCHHHHHHHHHhCCCCEEEEecccccchhhc------------cceEEEehh---------------------hhh
Confidence            99999999999999999999999997654333210            111111111                     000


Q ss_pred             hhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHHHHHh
Q 008535          180 LLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAM  259 (562)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~~~~~  259 (562)
                      ........ ........+++++++|||||||.||+|.++|+++..+.......+++..+|+++...|++|..++...+.+
T Consensus       127 ~~~~~~~~-~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~l~~~~~~  205 (487)
T PRK07638        127 MIEKYLPT-YAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFLYGAIST  205 (487)
T ss_pred             hhhhcccc-ccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCcCCCCEEEEeecchHHHHHHHHHHH
Confidence            01000000 00111234678999999999999999999999999888888888899999999999999998888888888


Q ss_pred             HhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHHh-c-CCe
Q 008535          260 AAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVAN-F-GFN  337 (562)
Q Consensus       260 ~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~~-~-~~~  337 (562)
                      +..|+++++.+.+++..+++.++++++|+++++|++++.|.+...    ...+.+.++++|+.++.+..+++.+ + +.+
T Consensus       206 l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~  281 (487)
T PRK07638        206 LYVGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKENR----VIENKMKIISSGAKWEAEAKEKIKNIFPYAK  281 (487)
T ss_pred             HccCcEEEEcCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcC----cCCceeEEEEcCCCCCHHHHHHHHHHcCCCe
Confidence            999999999888999999999999999999999999999987632    2345666778888999999998884 4 788


Q ss_pred             eeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhhhhh
Q 008535          338 IRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLG  417 (562)
Q Consensus       338 l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~g  417 (562)
                      +++.||+||++.++.....           ........+|.|.++. .++|++. ++.+++.+  +.|||+++|+.++.|
T Consensus       282 ~~~~YG~tE~~~~~~~~~~-----------~~~~~~~~~G~~~~~~-~~~i~d~-~g~~~~~g--~~Gel~v~~~~~~~g  346 (487)
T PRK07638        282 LYEFYGASELSFVTALVDE-----------ESERRPNSVGRPFHNV-QVRICNE-AGEEVQKG--EIGTVYVKSPQFFMG  346 (487)
T ss_pred             EEEEecCCccCceEEeccc-----------ccCCCCCCCCcccCCc-EEEEECC-CCCCCCCC--CCeEEEEecccceee
Confidence            9999999999866544321           1112234678887776 8888886 57777665  679999999999999


Q ss_pred             hcCCchhhHhhhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCCCCCcee
Q 008535          418 YFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVP  497 (562)
Q Consensus       418 y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~  497 (562)
                      |++++..+...+.+|||+|||+|++|++|.+++.||.+|+||++|.+|+|.+||+++.++|+|.+++|++.+++..++.+
T Consensus       347 y~~~~~~~~~~~~~g~~~TGDl~~~d~~g~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~  426 (487)
T PRK07638        347 YIIGGVLARELNADGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKP  426 (487)
T ss_pred             ecCCHHHHhhhccCCcEecCccEeEcCCCeEEEEecCCCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEecCchhcCCee
Confidence            99999888877889999999999999999999999999999999999999999999999999999999999998888888


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEee-cccCCCCCcchHHHHhhhhhhhcccc
Q 008535          498 VAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFE-DIPVNSTGKVQKFVLRGKVNATAVGW  560 (562)
Q Consensus       498 v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~-~lP~t~~GKv~r~~l~~~~~~~~~~~  560 (562)
                      +++++.    ....+++++++++.++++++|..++++ +||+|++||++|++|++++.+.++.+
T Consensus       427 ~~~v~~----~~~~~~l~~~~~~~l~~~~~p~~i~~v~~iP~t~~GKv~r~~L~~~~~~~~~~~  486 (487)
T PRK07638        427 VAIIKG----SATKQQLKSFCLQRLSSFKIPKEWHFVDEIPYTNSGKIARMEAKSWIENQEKIY  486 (487)
T ss_pred             EEEEEC----CCCHHHHHHHHHHHhhcccCCcEEEEecccCCCCcccccHHHHHHHHhcccccc
Confidence            888873    357789999999999999999988864 59999999999999999998877643

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=2.9e-67  Score=552.78  Aligned_cols=506  Identities=22%  Similarity=0.214  Sum_probs=393.6

Q ss_pred             CCCChHHHHHHHHHHcCCceEEEECCe----------eccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHH
Q 008535           18 VPLTPIDFLERAAHVYGDATSIIYGTV----------RFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLH   87 (562)
Q Consensus        18 ~~~ti~~~l~~~a~~~p~~~a~~~~~~----------~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~   87 (562)
                      +.+|+.++|++.++.+|+++|+++.+.          ++||+||.+++.++|++|.+.|+++||+|+++++|++++++++
T Consensus         4 ~~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~~   83 (552)
T PRK09274          4 SMANIARHLPRAAQERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALT   83 (552)
T ss_pred             hhhhHHHHHHHHHHhCCCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHHH
Confidence            346889999999999999999998654          7999999999999999999999999999999999999999999


Q ss_pred             HHhhhccceEEecCCCCCHHHHHHHHhhCCceEEEEecc--chHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCccc
Q 008535           88 FAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQ--FVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCS  165 (562)
Q Consensus        88 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (562)
                      +||+++|++++|++|.++.+++.++++.++++++|++..  ..+.+..    ....    ....++.++...        
T Consensus        84 la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~----~~~~----~~~~~i~~~~~~--------  147 (552)
T PRK09274         84 FALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFG----WGKP----SVRRLVTVGGRL--------  147 (552)
T ss_pred             HHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhc----cCcc----chhheecccccc--------
Confidence            999999999999999999999999999999999999752  1111111    0000    011122221110        


Q ss_pred             ccCCCCCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeec
Q 008535          166 VANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTL  245 (562)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~  245 (562)
                           ..+...+.++...............++++++++|||||||.||+|.++|+++..........+++.++++.++.+
T Consensus       148 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~  222 (552)
T PRK09274        148 -----LWGGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTF  222 (552)
T ss_pred             -----ccCCccHHHhcccCccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHhCCCCCceeeecc
Confidence                 001123333331111111111224568999999999999999999999999998888888888999999999999


Q ss_pred             ccccchhhHHHHHhHhhceEEEEec-------cCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEE
Q 008535          246 DMFRCNGWCCTWAMAAVGGINVCIR-------TVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVI  318 (562)
Q Consensus       246 pl~~~~gl~~~~~~~~~g~~~v~~~-------~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~  318 (562)
                      |++|.+++       ..|++.++..       .+++..+++.++++++|+++++|++++.|++.......+++++|.+++
T Consensus       223 pl~~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~  295 (552)
T PRK09274        223 PLFALFGP-------ALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANGIKLPSLRRVIS  295 (552)
T ss_pred             CHHHhhhh-------hhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcCCCCchhhEEEe
Confidence            99876543       3466666543       368899999999999999999999999998876555567899999999


Q ss_pred             eCCCChHHHHHHHHh-c--CCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccC---
Q 008535          319 AGVLPTIEVLEQVAN-F--GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQN---  392 (562)
Q Consensus       319 ~g~~l~~~~~~~~~~-~--~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~---  392 (562)
                      ||++++++..+.+++ +  ++++++.||+||++++++............  .........+|.+.++. .++|++.+   
T Consensus       296 gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~--~~~~~~~~~vG~~~~~~-~~~ivd~~~~~  372 (552)
T PRK09274        296 AGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISSIESREILFATRA--ATDNGAGICVGRPVDGV-EVRIIAISDAP  372 (552)
T ss_pred             cCCcCCHHHHHHHHHHcCCCceEEccccccccceeEeecchhhhccccc--cccCCCCcccCccCCCc-eEEEEeccccc
Confidence            999999999999984 4  579999999999987654332110000000  00011123568888776 78887742   


Q ss_pred             -----CcccccCCCCceeEEEEcchhhhhhhcCCchhhHhhh---ccc--eeeeCceeEEcCCCcEEEeccccceeecCC
Q 008535          393 -----TMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAF---RNG--WYHTGDLAVRNPDGYVQMKDRRKDIIISGA  462 (562)
Q Consensus       393 -----~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~---~~g--~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G  462 (562)
                           ++++++.+  +.|||+++|+.++.||+++++.+...|   .+|  ||+|||+|++|+||++++.||.||+|+++|
T Consensus       373 ~~~~~~~~~~~~g--~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~~G  450 (552)
T PRK09274        373 IPEWDDALRLATG--EIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAG  450 (552)
T ss_pred             cccccccccCCCC--CeeEEEEecCcccccccCChHHhhhhhcccCCCCcEEEcCCEEEEccCCcEEEEeccCCeEEECC
Confidence                 34555554  789999999999999999999888776   256  999999999999999999999999999999


Q ss_pred             eEechHHHHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCC---CCCCcEEEeec-ccC
Q 008535          463 EIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPS---CMVPRAIFFED-IPV  538 (562)
Q Consensus       463 ~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~---~~~p~~i~~~~-lP~  538 (562)
                      .+|+|.+||++|.+||+|.+++|++.+++. ++.++++|++.++...+.+++.+.+++.+..   ++.|..+.+++ ||+
T Consensus       451 ~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~lP~  529 (552)
T PRK09274        451 GTLYTIPCERIFNTHPGVKRSALVGVGVPG-AQRPVLCVELEPGVACSKSALYQELRALAAAHPHTAGIERFLIHPSFPV  529 (552)
T ss_pred             EEECcHHHHHHHHhCcccceeEEEEeCCCC-CceEEEEEEccCccccchHHHhhhhHHHHHhcCCCcceeEEeccCCCCc
Confidence            999999999999999999999999998764 6678899988877655555566666655444   45666776655 999


Q ss_pred             C--CCCcchHHHHhhhhhhhc
Q 008535          539 N--STGKVQKFVLRGKVNATA  557 (562)
Q Consensus       539 t--~~GKv~r~~l~~~~~~~~  557 (562)
                      |  ++||++|++|+++++++.
T Consensus       530 t~~~~GKi~r~~L~~~~~~~~  550 (552)
T PRK09274        530 DIRHNAKIFREKLAVWAAKQL  550 (552)
T ss_pred             cccccccccHHHHHHHHHHhh
Confidence            9  799999999999987764

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.4e-66  Score=543.27  Aligned_cols=521  Identities=27%  Similarity=0.431  Sum_probs=421.2

Q ss_pred             CCCCChHHHHHHHHHHcCCceEEEEC--C--eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhh
Q 008535           17 NVPLTPIDFLERAAHVYGDATSIIYG--T--VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPM   92 (562)
Q Consensus        17 ~~~~ti~~~l~~~a~~~p~~~a~~~~--~--~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~   92 (562)
                      .++.++.++|+++++.+|+..++.+.  +  +++||.||.++++++|++|.+.|+++||+|+++++|+++++++++||++
T Consensus         7 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~~~   86 (539)
T PRK07008          7 DMPLLISSLIAHAARHAGDTEIVSRRVEGDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSG   86 (539)
T ss_pred             cCCCCHHHHHHHHHhhCCCceEEEeeccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHh
Confidence            35668999999999999999988752  2  5799999999999999999999999999999999999999999999999


Q ss_pred             ccceEEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCC
Q 008535           93 AGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPS  172 (562)
Q Consensus        93 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (562)
                      +|++++|+++..+.+++..+++.+++++++++....+.+.+.......      ...++.+.+.... +      .. ..
T Consensus        87 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-~------~~-~~  152 (539)
T PRK07008         87 SGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQCPN------VKGWVAMTDAAHL-P------AG-ST  152 (539)
T ss_pred             cCcEEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHhhCCC------ceEEEEEccCCcc-c------cC-Cc
Confidence            999999999999999999999999999999998776655544332211      2223322221110 0      00 01


Q ss_pred             CCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHH--HHHhhcCCCCCCeeeeecccccc
Q 008535          173 GSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSL--AQISRCDVRDMPVFLWTLDMFRC  250 (562)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~--~~~~~~~~~~~~~~l~~~pl~~~  250 (562)
                      ...++.++......... .....++++++++|||||||.||+|.+||+++..+..  .....+++..+|++++..|++|.
T Consensus       153 ~~~~~~~l~~~~~~~~~-~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~  231 (539)
T PRK07008        153 PLLCYETLVGAQDGDYD-WPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHV  231 (539)
T ss_pred             ccccHHHHhcccCCCcC-cccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCchHHh
Confidence            23455555433222211 1234567899999999999999999999999865433  23346778889999999999998


Q ss_pred             hhhHHHHHhHhhceEEEEec-cCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHH
Q 008535          251 NGWCCTWAMAAVGGINVCIR-TVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLE  329 (562)
Q Consensus       251 ~gl~~~~~~~~~g~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~  329 (562)
                      +++...+.++..|+++++.+ .+++..+++.++++++|++.++|+++..|++........+++++.++++|+++++++.+
T Consensus       232 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~  311 (539)
T PRK07008        232 NAWGLPYSAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAGLRFSTLRRTVIGGSACPPAMIR  311 (539)
T ss_pred             hhHHHHHHHHhcCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHH
Confidence            88877777788899988764 57899999999999999999999999999987766666788999999999999999999


Q ss_pred             HHH-hcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEE
Q 008535          330 QVA-NFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVM  408 (562)
Q Consensus       330 ~~~-~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~  408 (562)
                      .+. .++.++++.||+||+++.++.+............ ........+|.|.++. .++|++. ++..++.++++.|||+
T Consensus       312 ~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~G~p~pg~-~~~i~d~-~~~~~~~~~~~~Gei~  388 (539)
T PRK07008        312 TFEDEYGVEVIHAWGMTEMSPLGTLCKLKWKHSQLPLD-EQRKLLEKQGRVIYGV-DMKIVGD-DGRELPWDGKAFGDLQ  388 (539)
T ss_pred             HHHHHhCCceecccccccccccceecccccccccCCch-hhhhhcccCCccccce-EEEEECC-CCCccCCCCCcceEEE
Confidence            997 6799999999999998765543321111100000 0001134577788777 8888885 6677776655679999


Q ss_pred             EcchhhhhhhcCCchhhHhhhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEee
Q 008535          409 FRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGK  488 (562)
Q Consensus       409 v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~  488 (562)
                      ++|+.++.||++++.   ..+.+|||+|||+|++|+||.+++.||.+|+|+.+|.+++|.+||+.|..+|.|.++++++.
T Consensus       389 v~g~~~~~gy~~~~~---~~~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~v~~~~v~~~  465 (539)
T PRK07008        389 VRGPWVIDRYFRGDA---SPLVDGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIAC  465 (539)
T ss_pred             EeCCccchhhcCChh---hhhcCCCcccCceEEEcCCCcEEEeecccCEEEeCCeEEcHHHHHHHHHhCCceeEEEEEec
Confidence            999999999999873   34568999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhhcc
Q 008535          489 VDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNATAV  558 (562)
Q Consensus       489 ~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~~~  558 (562)
                      ++..+++.++++|+..++...+.+++++++++++++|+.|..+++.+ ||+|++||++|++|+++|++-..
T Consensus       466 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~sgKi~r~~l~~~~~~~~~  536 (539)
T PRK07008        466 AHPKWDERPLLVVVKRPGAEVTREELLAFYEGKVAKWWIPDDVVFVDAIPHTATGKLQKLKLREQFRDYVL  536 (539)
T ss_pred             CCchhccceEEEEEeCCCCccCHHHHHHHHHhhcccccCCeEEEEecCCCCCCccceeHHHHHHHHHhhcc
Confidence            99888889999998877766778899999999999999999888654 99999999999999999887654

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=100.00  E-value=2e-66  Score=552.66  Aligned_cols=509  Identities=19%  Similarity=0.223  Sum_probs=392.2

Q ss_pred             CCCChHHHHHHHHHHcCCceEEEECC-----eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhh
Q 008535           18 VPLTPIDFLERAAHVYGDATSIIYGT-----VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPM   92 (562)
Q Consensus        18 ~~~ti~~~l~~~a~~~p~~~a~~~~~-----~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~   92 (562)
                      ...|+...+.+   +.++++|+++.+     +++||+||.+++.++|+.|.+.|+++||+|+++++|++++++++|||++
T Consensus        85 ~~~n~~~~~~~---~~~~~~a~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~lA~~~  161 (652)
T TIGR01217        85 ARLNYAENLLR---AAGTEPALLYVDETHEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATAS  161 (652)
T ss_pred             CeeeHHHHHhc---cCCCCeEEEEECCCCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence            44555555443   357888887732     5799999999999999999999999999999999999999999999999


Q ss_pred             ccceEEecCCCCCHHHHHHHHhhCCceEEEEeccc---------hHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCc
Q 008535           93 AGAVLSALNTRLDSATLASILRQLEAKIIFVDYQF---------VEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPST  163 (562)
Q Consensus        93 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (562)
                      +|++++|+++.++.+++.+++++++++++|+++..         .+.+......++.      ...++.++......   
T Consensus       162 ~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~---  232 (652)
T TIGR01217       162 VGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPT------LRAVVHIPYLGPRE---  232 (652)
T ss_pred             hCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCCC------ccEEEEEeCCCCcc---
Confidence            99999999999999999999999999999998753         2333333322211      22333332211000   


Q ss_pred             ccccCCCCCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHH-HHHHHhhcCCCCCCeee
Q 008535          164 CSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLN-SLAQISRCDVRDMPVFL  242 (562)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~-~~~~~~~~~~~~~~~~l  242 (562)
                      ....  ...+...+.++............+...+++++|+|||||||.||||+++|++++.. .......+++.++|+++
T Consensus       233 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~  310 (652)
T TIGR01217       233 TEAP--KIDGALDLEDFTAAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLF  310 (652)
T ss_pred             cccc--cccCcccHHHHHhcccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccCCCCCcEEE
Confidence            0000  00123456665543211111112345689999999999999999999999986543 34444567889999999


Q ss_pred             eecccccchhhHHHHHhHhhceEEEEecc----CCHHHHHHHHHhcCeEEEEcchHHHHHHHhccc--cccccccceEEE
Q 008535          243 WTLDMFRCNGWCCTWAMAAVGGINVCIRT----VSAKIIFDSILIHKVTHLCGQPRILNMIANASA--SDQNQLQRKVII  316 (562)
Q Consensus       243 ~~~pl~~~~gl~~~~~~~~~g~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~--~~~~~l~~l~~i  316 (562)
                      +..|+.|..+ ..++.++..|+++++.+.    .++..++++++++++|++...|.+++.+.....  ....+++++|.+
T Consensus       311 ~~~~~~~~~~-~~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~l~sLr~i  389 (652)
T TIGR01217       311 YYTTTGWMMW-NWLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPARTHDLSALQCV  389 (652)
T ss_pred             EeCCcchhhh-HHHHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCCCccccCChhheeEE
Confidence            9999988753 335578889999998752    378899999999999999888888887765421  234568999999


Q ss_pred             EEeCCCChHHHHHHHH-hcC--CeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCC
Q 008535          317 VIAGVLPTIEVLEQVA-NFG--FNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNT  393 (562)
Q Consensus       317 ~~~g~~l~~~~~~~~~-~~~--~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~  393 (562)
                      ++||++++++..+++. .++  ..+.+.||+||+++......  +         ..+.....+|.|.++. .+++++. +
T Consensus       390 ~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~--~---------~~~~~~g~~g~p~~g~-~v~ivd~-~  456 (652)
T TIGR01217       390 ASTGSPLPPDGFRWVYDEIKADVWLASISGGTDICSCFAGAN--P---------TLPVHIGEIQAPGLGT-AVQSWDP-E  456 (652)
T ss_pred             EeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHhccccCCC--C---------CCCCcCCccCCCcCCC-ceEEECC-C
Confidence            9999999999999887 444  45778999999754332211  0         0111223456677776 7778776 5


Q ss_pred             cccccCCCCceeEEEEcch--hhhhhhcCCchhhH--hh-hc--cceeeeCceeEEcCCCcEEEeccccceeecCCeEec
Q 008535          394 MKSVPHDGKTLGEVMFRAN--TVMLGYFKNPKATE--EA-FR--NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIIS  466 (562)
Q Consensus       394 ~~~~~~~~~~~Gel~v~~~--~~~~gy~~~~~~~~--~~-~~--~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~  466 (562)
                      +++++   ++.|||+++||  .++.|||++++.+.  .. |.  +|||+|||+|++|+||.+++.||.||+||++|.+|+
T Consensus       457 g~~~~---g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g~~~tGDlg~~d~dG~l~i~GR~dd~I~~~G~ri~  533 (652)
T TIGR01217       457 GKPVT---GEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWRHGDWITLTPRGGIVIHGRSDSTLNPQGVRMG  533 (652)
T ss_pred             CCCCC---CCccEEEEecCCCccccceeCCCccchhHHhhhcCCCCEEEcCCcEEECCCCcEEEEecccCeEecCCEEcC
Confidence            66663   37799999996  58899999987553  22 32  689999999999999999999999999999999999


Q ss_pred             hHHHHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCCCCCH---HHHHHHHhccCCCCCCCcEEEeec-ccCCCCC
Q 008535          467 SLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASP---EELVTFCGDELPSCMVPRAIFFED-IPVNSTG  542 (562)
Q Consensus       467 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~~~---~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~G  542 (562)
                      |.+||++|.+||.|.+++|++++++..++.++++|++.++...+.   ++++++++++++++++|+.|.+++ ||+|++|
T Consensus       534 p~EIE~~l~~~p~V~eaavvg~~~~~~ge~~~afVv~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~T~sG  613 (652)
T TIGR01217       534 SAEIYNAVERLDEVRESLCIGQEQPDGGYRVVLFVHLAPGATLDDALLDRIKRTIRAGLSPRHVPDEIIEVPGIPHTLTG  613 (652)
T ss_pred             HHHHHHHHHhCCCcceEEEEeeecCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCCcCCCEEEECCCCCCCCCc
Confidence            999999999999999999999999999999999999987755443   589999999999999999988766 9999999


Q ss_pred             cchHHHHhhhhhhhc
Q 008535          543 KVQKFVLRGKVNATA  557 (562)
Q Consensus       543 Kv~r~~l~~~~~~~~  557 (562)
                      |++|+.|++++++..
T Consensus       614 Ki~r~~Lr~~~~~~~  628 (652)
T TIGR01217       614 KRVEVAVKRVLQGTP  628 (652)
T ss_pred             cChHHHHHHHHcCCC
Confidence            999999999987654

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.7e-66  Score=544.46  Aligned_cols=508  Identities=23%  Similarity=0.294  Sum_probs=403.7

Q ss_pred             CCCChHHHHHHHHHHcCCceEEEECC--eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccc
Q 008535           18 VPLTPIDFLERAAHVYGDATSIIYGT--VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGA   95 (562)
Q Consensus        18 ~~~ti~~~l~~~a~~~p~~~a~~~~~--~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~   95 (562)
                      ...|+.++|+++++.+|+++|+++.+  ..+||+||.+++.++|+.|.+.|+++||+|+++++|+++++++++||+++|+
T Consensus        14 ~~~~l~~~l~~~a~~~p~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~   93 (534)
T PRK05852         14 FGPRIADLVEVAATRLPEAPALVVTADRIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADL   93 (534)
T ss_pred             hcccHHHHHHHHHHhCCCCcEEEecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCc
Confidence            34489999999999999999998744  4799999999999999999999999999999999999999999999999999


Q ss_pred             eEEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCC
Q 008535           96 VLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSL  175 (562)
Q Consensus        96 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (562)
                      +++++++.++.+++.++++.++++++|++............   ..     .+..+.+...... .     ....   ..
T Consensus        94 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~~~-~-----~~~~---~~  156 (534)
T PRK05852         94 VVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTT---RW-----WPLTVNVGGDSGP-S-----GGTL---SV  156 (534)
T ss_pred             EEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhccccc---cc-----cceeeeecccccc-c-----cccc---cc
Confidence            99999999999999999999999999998753321110000   00     0111111110000 0     0000   00


Q ss_pred             chhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHH
Q 008535          176 DYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCC  255 (562)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~  255 (562)
                      .+....  .........+...++.++++|||||||.||||.++|+++..........+.+..+|++++..|++|.+++..
T Consensus       157 ~~~~~~--~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~  234 (534)
T PRK05852        157 HLDAAT--EPTPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLYHGHGLIA  234 (534)
T ss_pred             cccccc--CCCccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCcceEEEecCcchhHHHHH
Confidence            000000  000000111122468899999999999999999999999988888888889999999999999999999876


Q ss_pred             -HHHhHhhceEEEEec--cCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccc--cccccceEEEEEeCCCChHHHHHH
Q 008535          256 -TWAMAAVGGINVCIR--TVSAKIIFDSILIHKVTHLCGQPRILNMIANASASD--QNQLQRKVIIVIAGVLPTIEVLEQ  330 (562)
Q Consensus       256 -~~~~~~~g~~~v~~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~--~~~l~~l~~i~~~g~~l~~~~~~~  330 (562)
                       .+.++..|+++++..  .+++..+++.++++++|.++++|.++..|.+.....  ...++++|.++++|+++++++.+.
T Consensus       235 ~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~~~~~~~~~  314 (534)
T PRK05852        235 ALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPSGRKPAALRFIRSCSAPLTAETAQA  314 (534)
T ss_pred             HHHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhcccccccccCCCeeEEEECCCCCCHHHHHH
Confidence             455556666666533  478999999999999999999999999998765332  245789999999999999999999


Q ss_pred             HH-hcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCcc--ccccccceecccCCcccccCCCCceeEE
Q 008535          331 VA-NFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLN--NLLIQGVDVKQQNTMKSVPHDGKTLGEV  407 (562)
Q Consensus       331 ~~-~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~i~~~~~~~~~~~~~~~~Gel  407 (562)
                      ++ .++.++++.||+||++..++........  .     ........|.+  .++. .+++++. ++++++.+  +.|||
T Consensus       315 ~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~--~-----~~~~~~~~g~~g~~~g~-~~~i~d~-~g~~~~~g--~~Gel  383 (534)
T PRK05852        315 LQTEFAAPVVCAFGMTEATHQVTTTQIEGIG--Q-----TENPVVSTGLVGRSTGA-QIRIVGS-DGLPLPAG--AVGEV  383 (534)
T ss_pred             HHHHhCCChhhccCccccchhhhcCCccccc--c-----ccCcccccccCCCCCCC-eEEEECC-CCCCCCCC--CceEE
Confidence            88 5799999999999998665543211000  0     00001123333  3444 6677775 56667665  77999


Q ss_pred             EEcchhhhhhhcCCchhhHhhhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEe
Q 008535          408 MFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVG  487 (562)
Q Consensus       408 ~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~  487 (562)
                      +|+|+.++.||+++++.+...|.+|||+|||+|++|+||++++.||.+|+|+.+|.+|+|.+||+++.++|+|.+++|++
T Consensus       384 ~v~g~~v~~gY~~~~~~t~~~~~~g~~~TGD~~~~d~dG~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~V~~~~v~g  463 (534)
T PRK05852        384 WLRGTTVVRGYLGDPTITAANFTDGWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEAAVFG  463 (534)
T ss_pred             EEecCcccchhcCCcccchhhhcCCCcccCceEEEeCCCcEEEEecchhhEEECCEEECHHHHHHHHHhCCCeeeEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhh
Q 008535          488 KVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNA  555 (562)
Q Consensus       488 ~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~  555 (562)
                      .+++..++.++++|+..+....+.+++.++++++++.+++|+.+.+++ ||+|++||++|++|++.|..
T Consensus       464 ~~~~~~g~~~~~~vv~~~~~~~~~~~i~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~L~~~~~~  532 (534)
T PRK05852        464 VPDQLYGEAVAAVIVPRESAPPTAEELVQFCRERLAAFEIPASFQEASGLPHTAKGSLDRRAVAEQFGH  532 (534)
T ss_pred             cCCcCcCceEEEEEEECCCCCCCHHHHHHHHHHhcccccCCeEEEEhhhcCCCCCccccHHHHHHHhcc
Confidence            999888899999999877666788999999999999999999988665 99999999999999999854

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.9e-66  Score=553.18  Aligned_cols=510  Identities=22%  Similarity=0.246  Sum_probs=397.9

Q ss_pred             CCCChHHHHHHHHHHcCCceEEEECC-----eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhh
Q 008535           18 VPLTPIDFLERAAHVYGDATSIIYGT-----VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPM   92 (562)
Q Consensus        18 ~~~ti~~~l~~~a~~~p~~~a~~~~~-----~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~   92 (562)
                      ...|+.+.+.++  .+|+++|+++.+     +++||+||.+++.++|+.|.+.|+++||+|+++++|++++++++|||++
T Consensus        84 ~~~n~~~~~~~~--~~~~~~Al~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~lA~~~  161 (655)
T PRK03584         84 ARLNYAENLLRH--RRDDRPAIIFRGEDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATAS  161 (655)
T ss_pred             CEeeHHHHhhcc--CCCCCeEEEEECCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence            334666555432  579999998753     5899999999999999999999999999999999999999999999999


Q ss_pred             ccceEEecCCCCCHHHHHHHHhhCCceEEEEeccch---------HHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCc
Q 008535           93 AGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFV---------EVVQNALDILSPNHKCDKAPLLVTIPECDHYQPST  163 (562)
Q Consensus        93 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (562)
                      +|++++|+++.++.+++.++++.++++++|+++...         +.+......+..      ...++.++.....    
T Consensus       162 ~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~----  231 (655)
T PRK03584        162 LGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPS------LEHVVVVPYLGPA----  231 (655)
T ss_pred             cCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCCC------ccEEEEEecCCCc----
Confidence            999999999999999999999999999999987532         222222221110      1223333221100    


Q ss_pred             ccccCCCCCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHH-HHHHHhhcCCCCCCeee
Q 008535          164 CSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLN-SLAQISRCDVRDMPVFL  242 (562)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~-~~~~~~~~~~~~~~~~l  242 (562)
                        .......+...|.++............+...+++++|+|||||||.||||++||++++.+ .......+++.++|+++
T Consensus       232 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~  309 (655)
T PRK03584        232 --AAAAALPGALLWEDFLAPAEAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDLGPGDRFF  309 (655)
T ss_pred             --ccccccCCcccHHHHhhccccCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcCCCCCCEEE
Confidence              000011123455555542221111222345689999999999999999999999987644 44455667889999999


Q ss_pred             eecccccchhhHHHHHhHhhceEEEEec----cCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccc--cccccccceEEE
Q 008535          243 WTLDMFRCNGWCCTWAMAAVGGINVCIR----TVSAKIIFDSILIHKVTHLCGQPRILNMIANASA--SDQNQLQRKVII  316 (562)
Q Consensus       243 ~~~pl~~~~gl~~~~~~~~~g~~~v~~~----~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~--~~~~~l~~l~~i  316 (562)
                      +..++.|..+. ..+.+++.|+++++.+    ..++..+++.++++++|++..+|.+++.|.+...  ....+++++|.+
T Consensus       310 ~~~~~~~~~~~-~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i  388 (655)
T PRK03584        310 WYTTCGWMMWN-WLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLVPGETHDLSALRTI  388 (655)
T ss_pred             EcCCchHHhHH-HHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCCccccCChhheEEE
Confidence            99988876543 4567888999998875    2589999999999999999999999999976532  233568899999


Q ss_pred             EEeCCCChHHHHHHHH-hc--CCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCC
Q 008535          317 VIAGVLPTIEVLEQVA-NF--GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNT  393 (562)
Q Consensus       317 ~~~g~~l~~~~~~~~~-~~--~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~  393 (562)
                      ++||+++++++.+++. .+  +..+.+.||+||+++......           .........+|.|.++. .++|+|. +
T Consensus       389 ~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~-----------~~~~~~~g~~g~p~~g~-~~~ivd~-~  455 (655)
T PRK03584        389 GSTGSPLPPEGFDWVYEHVKADVWLASISGGTDICSCFVGGN-----------PLLPVYRGEIQCRGLGM-AVEAWDE-D  455 (655)
T ss_pred             EEecCCCCHHHHHHHHHHhCCCceEEeccChHhhhcccccCC-----------CCCCcCCCccCCCcCCc-eeEEECC-C
Confidence            9999999999999987 44  478999999999864433211           00111234567777776 7888886 5


Q ss_pred             cccccCCCCceeEEEEcch--hhhhhhcCCchhhH--hh-h--ccceeeeCceeEEcCCCcEEEeccccceeecCCeEec
Q 008535          394 MKSVPHDGKTLGEVMFRAN--TVMLGYFKNPKATE--EA-F--RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIIS  466 (562)
Q Consensus       394 ~~~~~~~~~~~Gel~v~~~--~~~~gy~~~~~~~~--~~-~--~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~  466 (562)
                      +.++ .+  +.|||+|+|+  +++.||+++++.+.  .. |  .+|||+|||+|++|+||.+++.||.||+||++|.+|+
T Consensus       456 g~~~-~g--~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~Ik~~G~rI~  532 (655)
T PRK03584        456 GRPV-VG--EVGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFPGVWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIG  532 (655)
T ss_pred             CCCC-CC--CceEEEEccCCCCCcceeeCCCccchHHHhhhccCCCEeecCCeEEECCCCeEEEEeeccCeeecCcEEEC
Confidence            6665 33  6799999996  78999999987543  22 2  2689999999999999999999999999999999999


Q ss_pred             hHHHHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCCCCCH---HHHHHHHhccCCCCCCCcEEEeec-ccCCCCC
Q 008535          467 SLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASP---EELVTFCGDELPSCMVPRAIFFED-IPVNSTG  542 (562)
Q Consensus       467 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~~~---~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~G  542 (562)
                      |.+||++|.+||.|.+++|++.+++..++.++++|++.++...+.   ++++++++++++++++|..+++++ ||+|++|
T Consensus       533 p~EIE~~l~~~p~V~ea~vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~i~~v~~lP~t~sG  612 (655)
T PRK03584        533 TAEIYRQVEALPEVLDSLVIGQEWPDGDVRMPLFVVLAEGVTLDDALRARIRTTIRTNLSPRHVPDKIIAVPDIPRTLSG  612 (655)
T ss_pred             HHHHHHHHHhCCCcceEEEEeeEcCCCCEEEEEEEEECCCCCCcHHHHHHHHHHHHhhCCCCcCCCEEEECCCCCCCCCc
Confidence            999999999999999999999999888999999999987654443   689999999999999999988765 9999999


Q ss_pred             cchHHHHhhhhhhhcc
Q 008535          543 KVQKFVLRGKVNATAV  558 (562)
Q Consensus       543 Kv~r~~l~~~~~~~~~  558 (562)
                      |++|+.|++++.+...
T Consensus       613 Ki~r~~lr~~~~~~~~  628 (655)
T PRK03584        613 KKVELPVKKLLHGRPV  628 (655)
T ss_pred             cchHHHHHHHHcCCCC
Confidence            9999999999876653

>PRK06145 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.6e-66  Score=535.68  Aligned_cols=491  Identities=27%  Similarity=0.385  Sum_probs=412.4

Q ss_pred             CChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEEe
Q 008535           20 LTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSA   99 (562)
Q Consensus        20 ~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~   99 (562)
                      +++.++++++++.+|+++|+.+.+..+||.||.+++.++|.+|.+.|+++|++|+++++|+++++++++||+++|++++|
T Consensus         2 ~~~~~~~~~~~~~~~~~~a~~~~~~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~   81 (497)
T PRK06145          2 FNLSASIAFHARRTPDRAALVYRDQEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLP   81 (497)
T ss_pred             ccHHHHHHHHHHHCCCceEEEECCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEe
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCchhh
Q 008535          100 LNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYND  179 (562)
Q Consensus       100 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (562)
                      +++..+.+++..+++.+++++++++.+.......             ....+.++....                ..+..
T Consensus        82 l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~-------------~~~~~~~~~~~~----------------~~~~~  132 (497)
T PRK06145         82 INYRLAADEVAYILGDAGAKLLLVDEEFDAIVAL-------------ETPKIVIDAAAQ----------------ADSRR  132 (497)
T ss_pred             cccccCHHHHHHHHHhcCCcEEEEccchhhhhhc-------------ccceEEecCccc----------------chhHH
Confidence            9999999999999999999999998765432110             001111111000                00001


Q ss_pred             hhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHH-HHH
Q 008535          180 LLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCC-TWA  258 (562)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~-~~~  258 (562)
                      +.. ............++++++++|||||||.||+|.+||+++..........+++..+++++...|++|.+++.. .+.
T Consensus       133 ~~~-~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  211 (497)
T PRK06145        133 LAQ-GGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERLLVVGPLYHVGAFDLPGIA  211 (497)
T ss_pred             Hhc-cCCCCCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCcEEEEecCchhHhHHHHHHHH
Confidence            100 000111112245679999999999999999999999998877766667788999999999999999988864 466


Q ss_pred             hHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHH-hc-CC
Q 008535          259 MAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVA-NF-GF  336 (562)
Q Consensus       259 ~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~-~~-~~  336 (562)
                      .++.|+++++.+.+++..+++.++++++|.+.++|++++.++.........++++|.+++||++++.+..+.++ .+ +.
T Consensus       212 ~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~  291 (497)
T PRK06145        212 VLWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDLDSLAWCIGGGEKTPESRIRDFTRVFTRA  291 (497)
T ss_pred             HHhccCEEEECCcCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCccccccccceEEEecCCCCCHHHHHHHHHHcCCC
Confidence            77888988888889999999999999999999999999999887665556778999999999999999999987 44 67


Q ss_pred             eeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhhhh
Q 008535          337 NIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVML  416 (562)
Q Consensus       337 ~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~  416 (562)
                      ++++.||+||+++.++......          .......+|.+.++. .+++.+. ++..++.+  +.|||+++|+.++.
T Consensus       292 ~v~~~YG~tE~~~~~~~~~~~~----------~~~~~~~~G~~~~~~-~~~i~~~-~~~~~~~~--~~Gel~v~g~~~~~  357 (497)
T PRK06145        292 RYIDAYGLTETCSGDTLMEAGR----------EIEKIGSTGRALAHV-EIRIADG-AGRWLPPN--MKGEICMRGPKVTK  357 (497)
T ss_pred             ceEEeecCcccCCcceeccCcc----------ccccCCCcccCCCCc-eEEEECC-CCCCCCCC--CceEEEEECcchhh
Confidence            8999999999987554322110          001123567777776 7888875 56666655  67999999999999


Q ss_pred             hhcCCchhhHhhhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCCCCCce
Q 008535          417 GYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEV  496 (562)
Q Consensus       417 gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~  496 (562)
                      ||+++++.+...|.++||+|||+|+++++|.+++.||.+|+||++|.+++|.+||+.|.++++|.+++|++.+++..++.
T Consensus       358 Gy~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~  437 (497)
T PRK06145        358 GYWKDPEKTAEAFYGDWFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGER  437 (497)
T ss_pred             hhcCChHHHHHHHhCCCeeccceEEEcCCCcEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999888889


Q ss_pred             eEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEee-cccCCCCCcchHHHHhhhhh
Q 008535          497 PVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFE-DIPVNSTGKVQKFVLRGKVN  554 (562)
Q Consensus       497 ~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~-~lP~t~~GKv~r~~l~~~~~  554 (562)
                      +++++++.+......+++.++++++++++++|..++++ +||+|++||++|++|+++++
T Consensus       438 ~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~iP~t~~GKi~r~~l~~~~~  496 (497)
T PRK06145        438 ITAVVVLNPGATLTLEALDRHCRQRLASFKVPRQLKVRDELPRNPSGKVLKRVLRDELN  496 (497)
T ss_pred             EEEEEEECCCCCCCHHHHHHHHHHhhhcCCCCCEEEEeccCCCCCcccccHHHHHHHhc
Confidence            99999988766677899999999999999999998865 49999999999999998775

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=8.6e-66  Score=539.74  Aligned_cols=506  Identities=27%  Similarity=0.382  Sum_probs=422.3

Q ss_pred             CCCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceE
Q 008535           18 VPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVL   97 (562)
Q Consensus        18 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~   97 (562)
                      ..+|+.+.+.+.++.+|+++|+.+.+..+||.||.+++.++|.+|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus        15 ~~~n~~~~~~~~a~~~~~~~a~~~~~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~   94 (542)
T PRK07786         15 RRQNWVNQLARHALMQPDAPALRFLGNTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIA   94 (542)
T ss_pred             cccCHHHHHHHHHHHCCCCeEEEeCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEE
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCch
Q 008535           98 SALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDY  177 (562)
Q Consensus        98 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (562)
                      +|+++..+.+++..+++.+++++++++....+.+.......+.      ...++.+.+..             ..+..++
T Consensus        95 vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-------------~~~~~~~  155 (542)
T PRK07786         95 VPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPL------LSTVVVAGGSS-------------DDSVLGY  155 (542)
T ss_pred             EEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHhhhccCc------cceEEEecCCC-------------cccccCH
Confidence            9999999999999999999999999998766655443322110      22233322111             1122344


Q ss_pred             hhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCC-CCCCeeeeecccccchhhHHH
Q 008535          178 NDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDV-RDMPVFLWTLDMFRCNGWCCT  256 (562)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~-~~~~~~l~~~pl~~~~gl~~~  256 (562)
                      .++........ .......+++++++|||||||.||+|.++|+++..........+++ ...+++++..|++|.+|+..+
T Consensus       156 ~~~~~~~~~~~-~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~  234 (542)
T PRK07786        156 EDLLAEAGPAH-APVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIGSM  234 (542)
T ss_pred             HHHhhccCCCC-CCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCCCCCCceEEEecchHHHHHHHHH
Confidence            55443332221 1123445689999999999999999999999998888777777776 678899999999999999888


Q ss_pred             HHhHhhceEEEEec--cCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHHh-
Q 008535          257 WAMAAVGGINVCIR--TVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVAN-  333 (562)
Q Consensus       257 ~~~~~~g~~~v~~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~~-  333 (562)
                      +.++..|+++++.+  .+++..+++.++++++|.++++|++++.|+......... .++|.+++||++++++.++.+.+ 
T Consensus       235 ~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~-~~lr~i~~gg~~~~~~~~~~~~~~  313 (542)
T PRK07786        235 LPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARPRD-LALRVLSWGAAPASDTLLRQMAAT  313 (542)
T ss_pred             HHHHHccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCccC-cceEEEEECCCCCCHHHHHHHHHH
Confidence            88999999998865  579999999999999999999999999998875443333 36899999999999999999884 


Q ss_pred             c-CCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcch
Q 008535          334 F-GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRAN  412 (562)
Q Consensus       334 ~-~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~  412 (562)
                      + +.++++.||+||++++.+.....          ........+|.+.++. .++|++. ++..++.+  +.|||+++|+
T Consensus       314 ~~~~~l~~~YG~tE~~~~~~~~~~~----------~~~~~~~~~G~~~~~~-~~~i~d~-~~~~~~~g--~~Gel~v~g~  379 (542)
T PRK07786        314 FPEAQILAAFGQTEMSPVTCMLLGE----------DAIRKLGSVGKVIPTV-AARVVDE-NMNDVPVG--EVGEIVYRAP  379 (542)
T ss_pred             cCCCeEEeeecccccccceEecCcc----------cccccCCCccccCCCc-eEEEECC-CCCCCcCC--CceEEEEECh
Confidence            4 78899999999998765532211          0111224567777776 7888885 56666655  7799999999


Q ss_pred             hhhhhhcCCchhhHhhhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCCC
Q 008535          413 TVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQ  492 (562)
Q Consensus       413 ~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~  492 (562)
                      .++.||+++++.+...|.+|||+|||+++++++|.+++.||.+|+|+++|.+++|.+||++|.+++.|.+++|++.+...
T Consensus       380 ~~~~gy~~~~~~~~~~f~~~~~~TGDl~~~~~~g~~~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~  459 (542)
T PRK07786        380 TLMSGYWNNPEATAEAFAGGWFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEK  459 (542)
T ss_pred             hhhhhhcCCHHHHHHHhhCCcccccceEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988887


Q ss_pred             CCceeEEEEEeCCCC-CCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhhcc
Q 008535          493 LKEVPVAFVKLKEGR-EASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNATAV  558 (562)
Q Consensus       493 ~~~~~v~~v~~~~~~-~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~~~  558 (562)
                      .++.+++++++.+.. ....+++.++++++++++++|..+++++ ||+|++||++|++|++.|.+...
T Consensus       460 ~~~~~~~~v~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~iP~t~~GKv~r~~L~~~~~~~~~  527 (542)
T PRK07786        460 WGEVPVAVAAVRNDDAALTLEDLAEFLTDRLARYKHPKALEIVDALPRNPAGKVLKTELRERYGACVN  527 (542)
T ss_pred             cCceEEEEEEECCCCCCCCHHHHHHHHHhhccCCCCCCEEEEeccCCCCCcccccHHHHHHHHHhhhc
Confidence            788888988877543 3567899999999999999999888655 99999999999999999987764

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.6e-66  Score=554.12  Aligned_cols=505  Identities=18%  Similarity=0.219  Sum_probs=398.7

Q ss_pred             CCChHHHHHHHHHHcCCceEEEECC---------eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Q 008535           19 PLTPIDFLERAAHVYGDATSIIYGT---------VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFA   89 (562)
Q Consensus        19 ~~ti~~~l~~~a~~~p~~~a~~~~~---------~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA   89 (562)
                      ..|+.++|+++++.+|+++|+++.+         +.+||+||.+++.++|++|.+. +++||+|+++++|++++++++||
T Consensus        20 ~~~l~~~l~~~a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~~~~lA   98 (631)
T PRK07769         20 NTNLVRHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDYLIAFFG   98 (631)
T ss_pred             cCCHHHHHHHHHHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHHHHHHHH
Confidence            3589999999999999999998632         5799999999999999999987 89999999999999999999999


Q ss_pred             hhhccceEEec-CCCCC--HHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccc
Q 008535           90 VPMAGAVLSAL-NTRLD--SATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSV  166 (562)
Q Consensus        90 ~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (562)
                      |+++|++++|+ ++..+  .+++.++++.+++++++++.+..+.+.......+...    .+.++.++....        
T Consensus        99 ~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--------  166 (631)
T PRK07769         99 ALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKE----RPRVIAVDAVPD--------  166 (631)
T ss_pred             HHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccc----cceEEEcccccc--------
Confidence            99999999999 45554  6789999999999999999876555444322221100    122222211000        


Q ss_pred             cCCCCCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecc
Q 008535          167 ANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLD  246 (562)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~p  246 (562)
                                   ..   .... ...+..++++++|+|||||||.||||.+||+++..........+++..+++++..+|
T Consensus       167 -------------~~---~~~~-~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~P  229 (631)
T PRK07769        167 -------------EV---GATW-VPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLP  229 (631)
T ss_pred             -------------cc---cccc-CCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHcCCCCcceEEEeCC
Confidence                         00   0000 011245689999999999999999999999999988887778888999999999999


Q ss_pred             cccchhhHHHHHhHhhceEEEEecc--C--CHHHHHHHHHhcCe---EEEEcchHHHHHHHhcc---c--cccccccceE
Q 008535          247 MFRCNGWCCTWAMAAVGGINVCIRT--V--SAKIIFDSILIHKV---THLCGQPRILNMIANAS---A--SDQNQLQRKV  314 (562)
Q Consensus       247 l~~~~gl~~~~~~~~~g~~~v~~~~--~--~~~~~~~~i~~~~~---t~l~~~p~~~~~l~~~~---~--~~~~~l~~l~  314 (562)
                      ++|.+|+...+.+++.|+++++.++  +  ++..+++.++++++   +.+..+|.++..++...   .  ....+++++|
T Consensus       230 l~h~~gl~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~lr  309 (631)
T PRK07769        230 FFHDMGLITVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGLPKDGEPPLDLSNVK  309 (631)
T ss_pred             CcCchhhHHHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhccchhcccCcchhhee
Confidence            9999999888888888999888753  3  89999999999886   78899999887765431   1  1134688999


Q ss_pred             EEEEeCCCChHHHHHHHHh-c---CC---eeeccccCccccCcccccccCCCCCC-------------CcCCcc--cccc
Q 008535          315 IIVIAGVLPTIEVLEQVAN-F---GF---NIRHAYGMTEVLGPAIVRQWKPEGES-------------SALDHE--HEMT  372 (562)
Q Consensus       315 ~i~~~g~~l~~~~~~~~~~-~---~~---~l~~~YG~tE~~~~~~~~~~~~~~~~-------------~~~~~~--~~~~  372 (562)
                      .+++||++++++..+.|.+ +   |+   .+++.||+||+++.++..........             ..+...  ....
T Consensus       310 ~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  389 (631)
T PRK07769        310 GLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVA  389 (631)
T ss_pred             eEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCcee
Confidence            9999999999999998874 3   33   58999999998765554321110000             000000  0111


Q ss_pred             ccccCccccccccceecccCCcccccCCCCceeEEEEcchhhhhhhcCCchhhHhhhc------------------ccee
Q 008535          373 KHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFR------------------NGWY  434 (562)
Q Consensus       373 ~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~------------------~g~~  434 (562)
                      ...+|.+.++. .++|++.+++.+++.|  +.|||+|+|++++.||+++++.+.+.|.                  +|||
T Consensus       390 ~~s~G~~~~~~-~~~ivd~~~g~~~~~g--e~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~  466 (631)
T PRK07769        390 QVSAGKVGVSE-WAVIVDPETASELPDG--QIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWV  466 (631)
T ss_pred             EEeCCCcCCCc-EEEEEcCCCCcCCCCC--CEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCee
Confidence            23677777776 7788887678877766  7899999999999999999999998884                  3899


Q ss_pred             eeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhc-CCCcee--EEEEeeeC-------------------CC
Q 008535          435 HTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLS-NPKVLE--AAVVGKVD-------------------DQ  492 (562)
Q Consensus       435 ~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~-~~~v~~--~~v~~~~~-------------------~~  492 (562)
                      +|||+|+++ ||+++|+||.||+||++|++|+|.+||++|.+ +|.|.+  ++|+++++                   +.
T Consensus       467 ~TGDlg~~~-dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~  545 (631)
T PRK07769        467 RTGDYGVYF-DGELYITGRVKDLVIIDGRNHYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDPED  545 (631)
T ss_pred             eccccccEE-CCEEEEEcccccEEEECCeeeCHHHHHHHHHhccccccCCcEEEEEecccccccccccccccccccccCC
Confidence            999999996 99999999999999999999999999999996 899998  89999888                   55


Q ss_pred             CCceeEEEEEeCCCC-CCCHHHHHHHHhccCCC-CC-CCcEEEee---cccCCCCCcchHHHHhhhhhhhc
Q 008535          493 LKEVPVAFVKLKEGR-EASPEELVTFCGDELPS-CM-VPRAIFFE---DIPVNSTGKVQKFVLRGKVNATA  557 (562)
Q Consensus       493 ~~~~~v~~v~~~~~~-~~~~~~l~~~~~~~l~~-~~-~p~~i~~~---~lP~t~~GKv~r~~l~~~~~~~~  557 (562)
                      .++.++++|++.++. ..+.++|.+++++++.. ++ .|+.+.++   +||+|++||++|++|++.|.+..
T Consensus       546 ~ge~~~a~v~~~~~~~~~~~~~l~~~~~~~l~~~~~~~p~~~~~v~~~~lP~t~~GKi~r~~l~~~~~~~~  616 (631)
T PRK07769        546 TSEQLVIVAERAPGAHKLDPQPIADDIRAAIAVRHGVTVRDVLLVPAGSIPRTSSGKIARRACRAAYLDGS  616 (631)
T ss_pred             CCccEEEEEEecCccccccHHHHHHHHHHHHHHHcCCCccEEEEECCCccccCCCcHHHHHHHHHHHHcCC
Confidence            788999999988763 46788999999999985 56 48777765   39999999999999999887553

>PLN03052 acetate--CoA ligase; Provisional

Probab=100.00  E-value=5.4e-66  Score=550.85  Aligned_cols=513  Identities=19%  Similarity=0.210  Sum_probs=396.0

Q ss_pred             CCCChHH-HHHHHHHHcCCceEEEECC--------eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Q 008535           18 VPLTPID-FLERAAHVYGDATSIIYGT--------VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHF   88 (562)
Q Consensus        18 ~~~ti~~-~l~~~a~~~p~~~a~~~~~--------~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~l   88 (562)
                      ...|+.+ .|+++++.+|+++|+++.+        +++||+||.+++.++|+.|.+.|+++||+|+++++|++++++++|
T Consensus       172 ~~ln~~~~~l~~~~~~~pd~~Ai~~~~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e~via~L  251 (728)
T PLN03052        172 AVLNVAECCLTPKPSKTDDSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIYL  251 (728)
T ss_pred             CEeEHHHHHHHHHhccCCCCeEEEEECCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            4456654 5666666789999998754        379999999999999999999999999999999999999999999


Q ss_pred             HhhhccceEEecCCCCCHHHHHHHHhhCCceEEEEeccch------HHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCC
Q 008535           89 AVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFV------EVVQNALDILSPNHKCDKAPLLVTIPECDHYQPS  162 (562)
Q Consensus        89 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (562)
                      ||+++|++++|+++.++.+++.+++++++++++|+++...      +.........        ...++.+.......  
T Consensus       252 A~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~--------~~~~iv~~~~~~~~--  321 (728)
T PLN03052        252 AIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAK--------APKAIVLPADGKSV--  321 (728)
T ss_pred             HHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhc--------CCcEEEEeCCCCcc--
Confidence            9999999999999999999999999999999999987532      1111111111        11222222111000  


Q ss_pred             cccccCCCCCCCCchhhhhhcccCc---c-ccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCC
Q 008535          163 TCSVANNFPSGSLDYNDLLEMGKAD---F-EMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDM  238 (562)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~  238 (562)
                          ......+...|.+++......   . .......++++++|+|||||||.||||+++|.+++.........++++++
T Consensus       322 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~~l~~~  397 (728)
T PLN03052        322 ----RVKLREGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRKG  397 (728)
T ss_pred             ----ccccccCCccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhcCCCCC
Confidence                000011234566655432110   0 01111245899999999999999999999999987776666666788999


Q ss_pred             CeeeeecccccchhhHHHHHhHhhceEEEEecc-CCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEE
Q 008535          239 PVFLWTLDMFRCNGWCCTWAMAAVGGINVCIRT-VSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIV  317 (562)
Q Consensus       239 ~~~l~~~pl~~~~gl~~~~~~~~~g~~~v~~~~-~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~  317 (562)
                      |++++..++.|+++....+.++..|+++++.+. .++..+++.++++++|++.++|.+++.|.+.......+++++|.++
T Consensus       398 d~~~~~~~l~w~~g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~~~~dlssLr~i~  477 (728)
T PLN03052        398 DIVCWPTNLGWMMGPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMAGLDWSSIRCFG  477 (728)
T ss_pred             cEEEECCCcHHHhHHHHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCCcccCChhheeEEE
Confidence            999999999999998878889999999998863 5667899999999999999999999999876544556789999999


Q ss_pred             EeCCCChHHHHHHHHh-cC-CeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcc
Q 008535          318 IAGVLPTIEVLEQVAN-FG-FNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMK  395 (562)
Q Consensus       318 ~~g~~l~~~~~~~~~~-~~-~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~  395 (562)
                      ++|++++++...++.. ++ .++.+.||+||+++.+.....           ..+.....+|.|.++. .++|+|. +++
T Consensus       478 s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~-----------~~~~~~g~~g~p~~g~-~v~v~d~-~g~  544 (728)
T PLN03052        478 STGEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGSL-----------LQPQAFAAFSTPAMGC-KLFILDD-SGN  544 (728)
T ss_pred             ecCCCCCHHHHHHHHHhcCCCCeEeeccChhhCcccccCCC-----------CCCCCCCccccCCCCc-eEEEECC-CCC
Confidence            9999999998877763 34 579999999999765443211           0111234577888887 8888885 688


Q ss_pred             cccCCCCceeEEEEcchh--hhhhhcCCchhhHhhhc-----cc--eeeeCceeEEcCCCcEEEeccccceeecCCeEec
Q 008535          396 SVPHDGKTLGEVMFRANT--VMLGYFKNPKATEEAFR-----NG--WYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIIS  466 (562)
Q Consensus       396 ~~~~~~~~~Gel~v~~~~--~~~gy~~~~~~~~~~~~-----~g--~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~  466 (562)
                      +++.|..+.|||+++++.  ...+|+++. .....|.     .|  ||+|||++++|++|.+++.||+||+||++|.+|+
T Consensus       545 ~v~~g~~~~GEL~v~~~~~~~~~~~~~~~-~~~~yf~~~p~~~g~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~~G~rI~  623 (728)
T PLN03052        545 PYPDDAPCTGELALFPLMFGASSTLLNAD-HYKVYFKGMPVFNGKILRRHGDIFERTSGGYYRAHGRADDTMNLGGIKVS  623 (728)
T ss_pred             CCCCCCCceEEEEEeCCCCCCCccccCch-hhhhhhhcCCCCCCCEEEecCceEEECCCCeEEEEecCCCEEeeCCEEeC
Confidence            887664346999998653  234566553 2333331     23  9999999999999999999999999999999999


Q ss_pred             hHHHHHHHh-cCCCceeEEEEeeeCCCCC-ceeEEEEEeC--CCCCCCHHHHHH----HHhccCCCCCCCcEEEeec-cc
Q 008535          467 SLEVEAVLL-SNPKVLEAAVVGKVDDQLK-EVPVAFVKLK--EGREASPEELVT----FCGDELPSCMVPRAIFFED-IP  537 (562)
Q Consensus       467 ~~~iE~~l~-~~~~v~~~~v~~~~~~~~~-~~~v~~v~~~--~~~~~~~~~l~~----~~~~~l~~~~~p~~i~~~~-lP  537 (562)
                      |.|||++|. .+|.|.+++|++++++..| +.++++|++.  ++...+.++|++    ++++++++++.|+.|++++ ||
T Consensus       624 ~~EIE~~l~~~~p~V~eaaVvg~~d~~~g~e~~~afVvl~~~~g~~~~~~~L~~~i~~~i~~~l~~~~~p~~i~~v~~lP  703 (728)
T PLN03052        624 SVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIAAVLKDPPGSNPDLNELKKIFNSAIQKKLNPLFKVSAVVIVPSFP  703 (728)
T ss_pred             HHHHHHHHHhcCCCcceEEEEeeecCCCCcEEEEEEEEEecCCCCCCCHHHHHHHHHHHHHhhcCCccCCCEEEEcCCCC
Confidence            999999996 7899999999999998766 8899999987  454445455554    5667889999999888665 99


Q ss_pred             CCCCCcchHHHHhhhhhhhcc
Q 008535          538 VNSTGKVQKFVLRGKVNATAV  558 (562)
Q Consensus       538 ~t~~GKv~r~~l~~~~~~~~~  558 (562)
                      +|++||++|+.|++.+.+...
T Consensus       704 ~T~sGKi~Rr~Lr~~~~~~~~  724 (728)
T PLN03052        704 RTASNKVMRRVLRQQLAQELS  724 (728)
T ss_pred             CCCchHHHHHHHHHHHHhhhh
Confidence            999999999999999987765

>PRK07867 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.8e-66  Score=537.36  Aligned_cols=492  Identities=21%  Similarity=0.236  Sum_probs=401.6

Q ss_pred             CCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCcHHHHHHHHHhhhccceE
Q 008535           19 PLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQL-KISRGDIVAAMAPNIPALYKLHFAVPMAGAVL   97 (562)
Q Consensus        19 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~-gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~   97 (562)
                      +.++.++|++.+.  ++++++.+.++.+||.||.+++.++|..|.+. |++++++|+++++|+++++++++||+++|+++
T Consensus         4 ~~~~~~~l~~~a~--~~~~a~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~   81 (529)
T PRK07867          4 APTVAELLLPLAE--DDDRGLYFEDSFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAALSGIVP   81 (529)
T ss_pred             cccHHHHHHHhcc--cCCceEEECCcEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence            3478899988875  78999999999999999999999999999996 89999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCch
Q 008535           98 SALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDY  177 (562)
Q Consensus        98 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (562)
                      +|+++..+.+++.++++.++++++++++...+.+....    .      ...++.++.                   ..+
T Consensus        82 v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~----~------~~~~~~~~~-------------------~~~  132 (529)
T PRK07867         82 VGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLD----P------GVRVINVDS-------------------PAW  132 (529)
T ss_pred             EEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhc----c------CceEEEecc-------------------ccH
Confidence            99999999999999999999999999987665443321    0      111121111                   112


Q ss_pred             hhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHH-H
Q 008535          178 NDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCC-T  256 (562)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~-~  256 (562)
                      .+.+..............++++++++|||||||.||+|+++|+++..+.......+++..+|++++.+|++|.+++.. .
T Consensus       133 ~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~  212 (529)
T PRK07867        133 ADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGW  212 (529)
T ss_pred             HHHhcccCCCCCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhhCCCcccEEEEecchhHHHHHHHHH
Confidence            222221111111112345689999999999999999999999999888888888888999999999999999999875 4


Q ss_pred             HHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHHhcCC
Q 008535          257 WAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVANFGF  336 (562)
Q Consensus       257 ~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~~~~~  336 (562)
                      +..+..|+++++.+.+++..+++.++++++|++.++|..+..++...+......+++|. +.||+.+++...+..+.++.
T Consensus       213 ~~~l~~G~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~~~~~~~lr~-~~gg~~~~~~~~~~~~~~g~  291 (529)
T PRK07867        213 AVALAAGASIALRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPERPDDADNPLRI-VYGNEGAPGDIARFARRFGC  291 (529)
T ss_pred             HHHHhcCceEEecCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCcccccccceEE-EecCCCChHHHHHHHHHhCC
Confidence            45667788887777889999999999999999999999999988765433333456774 56888887765444446799


Q ss_pred             eeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCC----------CceeE
Q 008535          337 NIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDG----------KTLGE  406 (562)
Q Consensus       337 ~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~----------~~~Ge  406 (562)
                      ++++.||+||++........              .....+|.+.+   ++++++.+++..++.+.          +..||
T Consensus       292 ~l~~~YG~TE~~~~~~~~~~--------------~~~~~~g~~~~---~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~Ge  354 (529)
T PRK07867        292 VVVDGFGSTEGGVAITRTPD--------------TPPGALGPLPP---GVAIVDPDTGTECPPAEDADGRLLNADEAIGE  354 (529)
T ss_pred             cEEEeecccccccccccCCC--------------CCCCCcCCCCC---CEEEEECCCCCCCCCCccccccccccCCcceE
Confidence            99999999999754432110              01123454443   46777765666666552          12799


Q ss_pred             EEE-cchhhhhhhcCCchhhHhhhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEE
Q 008535          407 VMF-RANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAV  485 (562)
Q Consensus       407 l~v-~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v  485 (562)
                      |++ +|++++.||+++++.+...|.+|||+|||+|+++++|.+++.||.||+|+++|.+++|.+||++|.++|+|.+++|
T Consensus       355 l~i~~g~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~V  434 (529)
T PRK07867        355 LVNTAGPGGFEGYYNDPEADAERMRGGVYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAV  434 (529)
T ss_pred             EEEecCCcccccccCChHhhhhhhcCCeEeeccEEEEeCCCcEEEeccccCeEEECCEEeCHHHHHHHHHhCCCeeEEEE
Confidence            999 9999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhcc--CCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhhccc
Q 008535          486 VGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDE--LPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNATAVG  559 (562)
Q Consensus       486 ~~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~--l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~~~~  559 (562)
                      ++.+++..++.++++++..++...+.++++++++++  ++.+++|..+.+++ ||+|++||++|+.|++......++
T Consensus       435 ~g~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKv~r~~L~~~~~~~~~~  511 (529)
T PRK07867        435 YAVPDPVVGDQVMAALVLAPGAKFDPDAFAEFLAAQPDLGPKQWPSYVRVCAELPRTATFKVLKRQLSAEGVDCADP  511 (529)
T ss_pred             EeccCCCCCeeEEEEEEECCCCCCCHHHHHHHHHhhccCCcccCCeEEEEeeccCCCCCcceeHHHHHHhcCCCCCC
Confidence            999999999999999999887778889999999875  99999999887654 999999999999999988766543

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=1.2e-65  Score=537.06  Aligned_cols=496  Identities=24%  Similarity=0.334  Sum_probs=407.6

Q ss_pred             CCCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceE
Q 008535           18 VPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVL   97 (562)
Q Consensus        18 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~   97 (562)
                      ...++.++++++++.+|+++|+++.++++||+||.++++++|.+|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus        21 ~~~~l~~~~~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~  100 (527)
T TIGR02275        21 QDKPLTDILRDQAARYPDAIAIICGNRQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFALLKLGIAP  100 (527)
T ss_pred             cCCcHHHHHHHHHHHCCCceEEEeCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHcCeEE
Confidence            45589999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhhCCceEEEEeccchH-----HHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCC
Q 008535           98 SALNTRLDSATLASILRQLEAKIIFVDYQFVE-----VVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPS  172 (562)
Q Consensus        98 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (562)
                      +++++..+.+++.++++.+++++++++.....     ...........      ...++.......              
T Consensus       101 v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~--------------  160 (527)
T TIGR02275       101 VLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPT------LRNIIVAGQTRV--------------  160 (527)
T ss_pred             eccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCc------ceEEEEecCCCC--------------
Confidence            99999999999999999999999999876421     11111111100      112222111100              


Q ss_pred             CCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchh
Q 008535          173 GSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNG  252 (562)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g  252 (562)
                       .............. .......++++++++|||||||.||+|.+||.++..+.......+.+..+|+++..+|++|.++
T Consensus       161 -~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~P~~h~~~  238 (527)
T TIGR02275       161 -EAELFLWLESPAEP-VKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAHNYP  238 (527)
T ss_pred             -cchhhHHhhCcCcc-ccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCCEEEECCChHhhhh
Confidence             00011111111111 1112345689999999999999999999999999888888778888999999999999999999


Q ss_pred             hHH--HHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHH
Q 008535          253 WCC--TWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQ  330 (562)
Q Consensus       253 l~~--~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~  330 (562)
                      +..  .+.++..|+++++.+.+++..+++.+++++++++.++|.++..|++..+.....++++|.+++||++++.++.+.
T Consensus       239 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~  318 (527)
T TIGR02275       239 LSSPGALGVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSRYDLSSLKLLQVGGAKFSEAAARR  318 (527)
T ss_pred             hhHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHH
Confidence            864  677788899988888889999999999999999999999999998877666667889999999999999999999


Q ss_pred             HH-hcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEE
Q 008535          331 VA-NFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMF  409 (562)
Q Consensus       331 ~~-~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v  409 (562)
                      ++ .++.++++.||+||++......  ..         ........+|.+.++...+++++. +++.++.+  +.|||++
T Consensus       319 ~~~~~g~~~~~~YG~tE~~~~~~~~--~~---------~~~~~~~~~G~~~~~~~~v~i~d~-~g~~~~~g--~~Gei~v  384 (527)
T TIGR02275       319 VPAVFGCQLQQVFGMAEGLVNYTRL--DD---------PAEIIFTTQGRPMSPDDEVRVVDD-HGNPVAPG--ETGMLLT  384 (527)
T ss_pred             HHHHhCCeEEeeeccCccCccccCC--CC---------ccccccccCCCCCCCCceEEEECC-CCCCCCCC--CceEEEe
Confidence            97 5799999999999965332211  00         001112356776654337777775 56666665  7799999


Q ss_pred             cchhhhhhhcCCchhhHhhhc-cceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEee
Q 008535          410 RANTVMLGYFKNPKATEEAFR-NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGK  488 (562)
Q Consensus       410 ~~~~~~~gy~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~  488 (562)
                      +|+.++.||+++++.+...|. +|||+|||+|+++++|++++.||.+|+|+++|.+|+|.+||+.|.++|+|.+++|++.
T Consensus       385 ~g~~~~~gY~~~~~~~~~~~~~dg~~~TGDl~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~  464 (527)
T TIGR02275       385 RGPYTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVSM  464 (527)
T ss_pred             cCCccchhhcCChhHhHhhcCcCCCEEcCceEEEcCCccEEEEecccceeecCCEEECHHHHHHHHHhCCCceEEEEEec
Confidence            999999999999999988884 7999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCceeEEEEEeCCCCCCCHHHHHHHHhcc-CCCCCCCcEEEeec-ccCCCCCcchHHHHh
Q 008535          489 VDDQLKEVPVAFVKLKEGREASPEELVTFCGDE-LPSCMVPRAIFFED-IPVNSTGKVQKFVLR  550 (562)
Q Consensus       489 ~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~-l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~  550 (562)
                      +++..++.++++|++.+. ..+.+++++++++. ++.+++|..+.+++ ||+|++||++|+.|+
T Consensus       465 ~~~~~~~~~~a~vv~~~~-~~~~~~l~~~l~~~~l~~~~~P~~i~~v~~iP~t~sGKv~r~~L~  527 (527)
T TIGR02275       465 PDELLGEKSCAFIVVRDP-ALKAAQLRRFLRERGLAEYKLPDRVEFIDSLPLTAVGKIDKKALR  527 (527)
T ss_pred             CCcccccEEEEEEEECCC-CCCHHHHHHHHHhCCCccccCCCEEEEeccCCCCCccceeHHhcC
Confidence            999888999999988765 46788999999985 99999999888654 999999999999875

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=100.00  E-value=8.6e-66  Score=540.24  Aligned_cols=503  Identities=23%  Similarity=0.348  Sum_probs=410.7

Q ss_pred             CCChHHHHHHHHHHcCCceEEEEC--CeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccce
Q 008535           19 PLTPIDFLERAAHVYGDATSIIYG--TVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAV   96 (562)
Q Consensus        19 ~~ti~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~   96 (562)
                      ..|+.++|.+.++.+|+++|+.+.  ++.+||.||.+++.++|+.|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus        27 ~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~  106 (546)
T PLN02330         27 KLTLPDFVLQDAELYADKVAFVEAVTGKAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGV  106 (546)
T ss_pred             CCcHHHHHhhhhhcCCCccEEEecCCCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcE
Confidence            468999999999999999999874  578999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCc
Q 008535           97 LSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLD  176 (562)
Q Consensus        97 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (562)
                      ++|+++..+.+++.++++.+++++++++....+.+....           . .++.+.....             .+...
T Consensus       107 ~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~-----------~-~~i~~~~~~~-------------~~~~~  161 (546)
T PLN02330        107 FSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGLG-----------L-PVIVLGEEKI-------------EGAVN  161 (546)
T ss_pred             eccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhcC-----------C-cEEEecCCCC-------------CCccc
Confidence            999999999999999999999999999988766553310           1 1222221110             11233


Q ss_pred             hhhhhhcccCc--cccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcC--CCCCCeeeeecccccchh
Q 008535          177 YNDLLEMGKAD--FEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCD--VRDMPVFLWTLDMFRCNG  252 (562)
Q Consensus       177 ~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~--~~~~~~~l~~~pl~~~~g  252 (562)
                      |.+++......  ........++++++++|||||||.||||.++|+++..+.........  ....+..+..+|++|.++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g  241 (546)
T PLN02330        162 WKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIYG  241 (546)
T ss_pred             HHHHHhhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhccCccccCceEEEEecChHHHHH
Confidence            44444332211  11112234679999999999999999999999998776543322222  223457889999999998


Q ss_pred             hHH-HHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhcccccccccc--ceEEEEEeCCCChHHHHH
Q 008535          253 WCC-TWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQ--RKVIIVIAGVLPTIEVLE  329 (562)
Q Consensus       253 l~~-~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~--~l~~i~~~g~~l~~~~~~  329 (562)
                      +.. .+.++..|++++..+.+++..+++.++++++|.+.++|.++..|+.........+.  .+|.+++||++++++..+
T Consensus       242 ~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~i~~~g~~l~~~~~~  321 (546)
T PLN02330        242 ITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLSKLKLQAIMTAAAPLAPELLT  321 (546)
T ss_pred             HHHHHHHHhhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCccccccccchheeeeEEEcCCcCCHHHHH
Confidence            764 56667788898888889999999999999999999999999999886544434443  478999999999999999


Q ss_pred             HHH-hc-CCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEE
Q 008535          330 QVA-NF-GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEV  407 (562)
Q Consensus       330 ~~~-~~-~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel  407 (562)
                      ++. .+ +.++++.||+||++.+.........       .........+|.+.++. .+++++.+++.+++.|  +.|||
T Consensus       322 ~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~-------~~~~~~~~~vG~~~~~~-~v~i~d~~~~~~~p~g--~~Gel  391 (546)
T PLN02330        322 AFEAKFPGVQVQEAYGLTEHSCITLTHGDPEK-------GHGIAKKNSVGFILPNL-EVKFIDPDTGRSLPKN--TPGEL  391 (546)
T ss_pred             HHHHHcCCCeEEecccccccccceecCCCccc-------cccccccCccccccCCc-EEEEEeCCCCccCCCC--CceEE
Confidence            998 45 8999999999998755433211100       00011224577777777 7888887677777776  67999


Q ss_pred             EEcchhhhhhhcCCchhhHhhhc-cceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEE
Q 008535          408 MFRANTVMLGYFKNPKATEEAFR-NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVV  486 (562)
Q Consensus       408 ~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~  486 (562)
                      +++|+.++.||++++..+.+.+. +|||+|||+|++++||.+++.||.+|+|+++|++|+|.+||+++.+++.|.+++|+
T Consensus       392 ~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~  471 (546)
T PLN02330        392 CVRSQCVMQGYYNNKEETDRTIDEDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVV  471 (546)
T ss_pred             EEecchhhhhhccCccchhhhccCCCceecccEEEEeCCCcEEEEechHHhhhcCCEEECHHHHHHHHHhCCchheEEEE
Confidence            99999999999999998888774 79999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEe-ecccCCCCCcchHHHHhhhhhhh
Q 008535          487 GKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFF-EDIPVNSTGKVQKFVLRGKVNAT  556 (562)
Q Consensus       487 ~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~-~~lP~t~~GKv~r~~l~~~~~~~  556 (562)
                      +++++..++.++++|++.++...+.++++++++++++.+++|+.+.+ .++|+|++||++|++|++++...
T Consensus       472 ~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~~~~v~~iP~t~~GK~~r~~L~~~~~~~  542 (546)
T PLN02330        472 PLPDEEAGEIPAACVVINPKAKESEEDILNFVAANVAHYKKVRVVQFVDSIPKSLSGKIMRRLLKEKMLSI  542 (546)
T ss_pred             eccccccCceeEEEEEECCCCCCCHHHHHHHHHHhcccccCceEEEEeccCCCCCCcceeHHHHHHHHHhh
Confidence            99999889999999998877667788999999999999999997775 45999999999999999998654

>PRK06188 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.1e-65  Score=535.40  Aligned_cols=509  Identities=24%  Similarity=0.313  Sum_probs=423.0

Q ss_pred             CCCCCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccc
Q 008535           16 NNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGA   95 (562)
Q Consensus        16 ~~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~   95 (562)
                      ...+.|+.++|.++++++|+++|+++.+..+||.||.+.+.++|..|.+.|+++|++|+++++|+++++++++||+++|+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la~~~~G~   87 (524)
T PRK06188          8 LHSGATYGHLLVSALKRYPDRPALVLGDTRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGL   87 (524)
T ss_pred             hcCCccHHHHHHHHHHHCCCCeEEEECCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCC
Confidence            34566999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEecCCCCCHHHHHHHHhhCCceEEEEecc-chHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCC
Q 008535           96 VLSALNTRLDSATLASILRQLEAKIIFVDYQ-FVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGS  174 (562)
Q Consensus        96 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (562)
                      +++++++..+.+++..+++.++++.++++.. .............      ....++.+.....               .
T Consensus        88 ~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~---------------~  146 (524)
T PRK06188         88 RRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVP------SLKHVLTLGPVPD---------------G  146 (524)
T ss_pred             EEEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhhhcC------CceEEEEeCCccc---------------h
Confidence            9999999999999999999999999999876 3333322211111      0122222221110               0


Q ss_pred             CchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhH
Q 008535          175 LDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWC  254 (562)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~  254 (562)
                      ....+....... ........++++++++|||||||.||+|.++|.++..........+.+..++++++..|++|.+++.
T Consensus       147 ~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~  225 (524)
T PRK06188        147 VDLLAAAAKFGP-APLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAF  225 (524)
T ss_pred             hhHHHhhhccCc-ccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCcEEEEecCchhhhhHH
Confidence            000000000000 0111112345799999999999999999999999999888888889999999999999999998875


Q ss_pred             HHHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHH-h
Q 008535          255 CTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVA-N  333 (562)
Q Consensus       255 ~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~-~  333 (562)
                       .+..++.|+++++.+..++..+++.++++++++++++|.+++.|++........++++|.+++||++++++..+.+. .
T Consensus       226 -~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~  304 (524)
T PRK06188        226 -FLPTLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLRTRDLSSLETVYYGASPMSPVRLAEAIER  304 (524)
T ss_pred             -HHHHHHcCCEEEEcCCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCccCCCCcceeEEEEcCCCCCHHHHHHHHHH
Confidence             56778889999999889999999999999999999999999999988766667889999999999999999877776 5


Q ss_pred             cCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchh
Q 008535          334 FGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANT  413 (562)
Q Consensus       334 ~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~  413 (562)
                      ++..+++.||+||++..+........      ..........+|.|.++. .+++++. ++++++.+  +.|||+++|+.
T Consensus       305 ~~~~~~~~YG~tE~~~~~~~~~~~~~------~~~~~~~~~~~G~p~~g~-~v~i~~~-~~~~~~~g--~~Gel~v~~~~  374 (524)
T PRK06188        305 FGPIFAQYYGQTEAPMVITYLRKRDH------DPDDPKRLTSCGRPTPGL-RVALLDE-DGREVAQG--EVGEICVRGPL  374 (524)
T ss_pred             hCchhhheeCccccCCceeecCchhc------cccccccCCccccccCCc-EEEEEcC-CCCCCCCC--CeeEEEEECcc
Confidence            68889999999999765554322111      001122334678888777 7888886 47777765  67999999999


Q ss_pred             hhhhhcCCchhhHhhhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCCCC
Q 008535          414 VMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQL  493 (562)
Q Consensus       414 ~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~  493 (562)
                      ++.||++++..+...|.+|||+|||+|+++++|.+++.||.+|+|+++|++++|.+||++|.++++|.+++|++.+++..
T Consensus       375 ~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~  454 (524)
T PRK06188        375 VMDGYWNRPEETAEAFRDGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKW  454 (524)
T ss_pred             hhhhhcCChHHhhhhhcCCceeecceEEEcCCccEEEEeccccceecCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             CceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhhc
Q 008535          494 KEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNATA  557 (562)
Q Consensus       494 ~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~~  557 (562)
                      ++.+++++++.+......+++++++++.++.+++|..+.+++ ||+|++||++|++|++.|.+.+
T Consensus       455 ~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~gKi~r~~L~~~~~~~~  519 (524)
T PRK06188        455 GEAVTAVVVLRPGAAVDAAELQAHVKERKGSVHAPKQVDFVDSLPLTALGKPDKKALRARYWEGR  519 (524)
T ss_pred             CceEEEEEEECCCCCCCHHHHHHHHHHhcccCCCCcEEEEecCCCCCccccccHHHHHHHHHhhc
Confidence            889999999887766778899999999999999999988665 9999999999999999986654

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.1e-66  Score=557.14  Aligned_cols=475  Identities=21%  Similarity=0.246  Sum_probs=391.7

Q ss_pred             ChHHHHHHHHHH--cCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEE
Q 008535           21 TPIDFLERAAHV--YGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLS   98 (562)
Q Consensus        21 ti~~~l~~~a~~--~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v   98 (562)
                      |+.++|.++++.  +|+++|+.+. ..+||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus         5 ~~~~~~~~~a~~~~~pd~~a~~~~-~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~aG~~~v   83 (705)
T PRK06060          5 NLAGLLAEQASEAGWYDRPAFYAA-DVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARGVMAF   83 (705)
T ss_pred             CHHHHHHHHHhhccCCCceEEEec-CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEE
Confidence            889999998886  7999999875 4899999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCchh
Q 008535           99 ALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYN  178 (562)
Q Consensus        99 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (562)
                      |++|.++.+++.++++.++++++|++......+...              .+...                        .
T Consensus        84 pi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~--------------~~~~~------------------------~  125 (705)
T PRK06060         84 LANPELHRDDHALAARNTEPALVVTSDALRDRFQPS--------------RVAEA------------------------A  125 (705)
T ss_pred             ecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhccc--------------ccchh------------------------h
Confidence            999999999999999999999999986543322110              00000                        0


Q ss_pred             hhhhcc-cCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHH-hhcCCCCCCeeeeecccccchhhH-H
Q 008535          179 DLLEMG-KADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQI-SRCDVRDMPVFLWTLDMFRCNGWC-C  255 (562)
Q Consensus       179 ~~~~~~-~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~-~~~~~~~~~~~l~~~pl~~~~gl~-~  255 (562)
                      .+.... ........+..++++++++|||||||.||||.++|+++........ ..+++...+++++..|++|.+++. .
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~  205 (705)
T PRK06060        126 ELMSEAARVAPGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLGNS  205 (705)
T ss_pred             hhhhhccccCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhhCCCCcceeEEeccchhhcchhHH
Confidence            000000 0000011123567899999999999999999999999887766553 457888999999999999988875 4


Q ss_pred             HHHhHhhceEEEEec-cCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHHh-
Q 008535          256 TWAMAAVGGINVCIR-TVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVAN-  333 (562)
Q Consensus       256 ~~~~~~~g~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~~-  333 (562)
                      .+.++..|+++++.+ .+++..+...+.++++|+++++|+++..+++...  ...++++|.+++||+++++++.+.+.+ 
T Consensus       206 ~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~~~slr~i~~gGe~l~~~~~~~~~~~  283 (705)
T PRK06060        206 VWFPLATGGSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCS--PDSFRSLRCVVSAGEALELGLAERLMEF  283 (705)
T ss_pred             HHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhcc--cccccceeEEEEecCcCCHHHHHHHHHH
Confidence            667788899888876 4788889999999999999999999999987543  245789999999999999999999884 


Q ss_pred             c-CCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcch
Q 008535          334 F-GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRAN  412 (562)
Q Consensus       334 ~-~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~  412 (562)
                      + +.++++.||+||++..+......            ......+|.|.++. .++|++. ++.+++.|  +.|||+|+|+
T Consensus       284 ~~~~~~~~~YG~tE~~~~~~~~~~~------------~~~~~~iG~p~~~~-~v~i~d~-~g~~~~~g--~~GEl~i~g~  347 (705)
T PRK06060        284 FGGIPILDGIGSTEVGQTFVSNRVD------------EWRLGTLGRVLPPY-EIRVVAP-DGTTAGPG--VEGDLWVRGP  347 (705)
T ss_pred             cCCCceEeeeeccccCceEEeccCC------------CCCcCcccccCCCc-EEEEECC-CCCCCCCC--CceEEEEccc
Confidence            4 58999999999997554332110            11124567777776 7888876 46666665  6799999999


Q ss_pred             hhhhhhcCCchhhHhhhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCCC
Q 008535          413 TVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQ  492 (562)
Q Consensus       413 ~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~  492 (562)
                      .++.||+++++.+..  .+|||+|||+|++++||++++.||.||+||++|.+|+|.+||+.|.+++.|.+++|++.++..
T Consensus       348 ~v~~GY~~~~~~~~~--~~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~  425 (705)
T PRK06060        348 AIAKGYWNRPDSPVA--NEGWLDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEAAVVAVREST  425 (705)
T ss_pred             hhhhhhhCCCccccc--CCCcEECCeeEEECCCceEEEecccCceEEECCEEECHHHHHHHHHhCCCeeEEEEEeecCcc
Confidence            999999999876532  478999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCceeEEEEEeCCCCCCCH---HHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhh
Q 008535          493 LKEVPVAFVKLKEGREASP---EELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVN  554 (562)
Q Consensus       493 ~~~~~v~~v~~~~~~~~~~---~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~  554 (562)
                      .++.++++++..++...+.   ++++++++++|+.|++|..+.+++ ||+|++||++|++|++.+.
T Consensus       426 ~~~~~~a~vv~~~~~~~~~~~~~~i~~~l~~~L~~~~~P~~i~~v~~iP~t~~GKidr~~L~~~~~  491 (705)
T PRK06060        426 GASTLQAFLVATSGATIDGSVMRDLHRGLLNRLSAFKVPHRFAVVDRLPRTPNGKLVRGALRKQSP  491 (705)
T ss_pred             CCeeEEEEEEeccccCcChHHHHHHHHHHHHhCCCCcCCcEEEEeecCCCCcchhhHHHHHHhhcc
Confidence            8889999998776543333   578899999999999999888655 9999999999999998764

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=100.00  E-value=2.4e-65  Score=537.55  Aligned_cols=509  Identities=25%  Similarity=0.356  Sum_probs=417.8

Q ss_pred             CCCCCChHHHHHHHHHHcCCceEEEECC-eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhcc
Q 008535           16 NNVPLTPIDFLERAAHVYGDATSIIYGT-VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAG   94 (562)
Q Consensus        16 ~~~~~ti~~~l~~~a~~~p~~~a~~~~~-~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G   94 (562)
                      .+.+.|+.++|++.++.+|+++|+.+.+ +++||+||++++.++|+.|.+.|+++||+|+++++|+++++++++||+++|
T Consensus        19 ~~~~~~l~~~~~~~~~~~pd~~a~~~~~~~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~~~~G   98 (547)
T PRK06087         19 YWGDASLADYWQQTARAMPDKIAVVDNHGASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVG   98 (547)
T ss_pred             CCCCCCHHHHHHHHHHHCCCceEEEcCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence            4566789999999999999999999876 799999999999999999999999999999999999999999999999999


Q ss_pred             ceEEecCCCCCHHHHHHHHhhCCceEEEEeccc-----hHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCC
Q 008535           95 AVLSALNTRLDSATLASILRQLEAKIIFVDYQF-----VEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANN  169 (562)
Q Consensus        95 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (562)
                      ++++|+++..+.+++..+++.+++++++++...     .+.+......+..      ...++.++....           
T Consensus        99 ~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-----------  161 (547)
T PRK06087         99 AVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQ------LQQIVGVDKLAP-----------  161 (547)
T ss_pred             cEEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhhCCC------CcEEEEeCCcCC-----------
Confidence            999999999999999999999999999997643     2222222222110      122322221110           


Q ss_pred             CCCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeeccccc
Q 008535          170 FPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFR  249 (562)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~  249 (562)
                       ......+.++....+... .......+++++|+|||||||.||+|.+||+++..........+++.+++++++..|++|
T Consensus       162 -~~~~~~~~~~~~~~~~~~-~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h  239 (547)
T PRK06087        162 -ATSSLSLSQIIADYEPLT-TAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGH  239 (547)
T ss_pred             -CcCccCHHHHhccCCccc-CCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeEEEecchHH
Confidence             001123444433322111 112345689999999999999999999999999888877777888999999999999999


Q ss_pred             chhhHH-HHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHH
Q 008535          250 CNGWCC-TWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVL  328 (562)
Q Consensus       250 ~~gl~~-~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~  328 (562)
                      .+++.. .+.++..|+++++.+.+++..+++.++++++++++++|..+..++.........++++|.+++||++++++..
T Consensus       240 ~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~~~~~~~  319 (547)
T PRK06087        240 ATGFLHGVTAPFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPADLSALRFFLCGGTTIPKKVA  319 (547)
T ss_pred             HHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccCCCCCCCeEEEEEcCCCCCHHHH
Confidence            998764 5566777888888888999999999999999999998888887777665555678899999999999999999


Q ss_pred             HHHHhcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEE
Q 008535          329 EQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVM  408 (562)
Q Consensus       329 ~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~  408 (562)
                      +.+.+.++++++.||+||+++..+.....          .........|.+.++. .+++++. ++.+++.+  +.|||+
T Consensus       320 ~~~~~~~~~l~~~YG~TE~~~~~~~~~~~----------~~~~~~~~~G~~~~~~-~~~i~d~-~~~~~~~g--~~Gel~  385 (547)
T PRK06087        320 RECQQRGIKLLSVYGSTESSPHAVVNLDD----------PLSRFMHTDGYAAAGV-EIKVVDE-ARKTLPPG--CEGEEA  385 (547)
T ss_pred             HHHHHcCCcEEEEecccccCCccccCCCc----------chhhcCCcCCccCCCc-eEEEEcC-CCCCCcCC--CcceEE
Confidence            98887799999999999998765543210          0011123456676666 7778774 66777665  679999


Q ss_pred             EcchhhhhhhcCCchhhHhhhc-cceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEe
Q 008535          409 FRANTVMLGYFKNPKATEEAFR-NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVG  487 (562)
Q Consensus       409 v~~~~~~~gy~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~  487 (562)
                      ++|+.++.||+++++.+...|. +|||+|||++++|++|.+++.||.+|+|+.+|.+++|.+||++|.++++|.++++++
T Consensus       386 v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~  465 (547)
T PRK06087        386 SRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVA  465 (547)
T ss_pred             EecccccccccCCHHHHHHHhCCCCCcCcCceEEECCCCCEEEEecchhhhhcCCEEECHHHHHHHHHhCCCeeEEEEEe
Confidence            9999999999999999888884 799999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCceeEEEEEeCC-CCCCCHHHHHHHHh-ccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhhc
Q 008535          488 KVDDQLKEVPVAFVKLKE-GREASPEELVTFCG-DELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNATA  557 (562)
Q Consensus       488 ~~~~~~~~~~v~~v~~~~-~~~~~~~~l~~~~~-~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~~  557 (562)
                      .+++..++.++++++..+ +...+.+++.+++. +.++.+++|..+.+++ ||+|++||++|++|++.+.++.
T Consensus       466 ~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~~i~~v~~iP~t~sGK~~r~~l~~~~~~~~  538 (547)
T PRK06087        466 MPDERLGERSCAYVVLKAPHHSLTLEEVVAFFSRKRVAKYKYPEHIVVIDKLPRTASGKIQKFLLRKDIMRRL  538 (547)
T ss_pred             cCCCCcCceEEEEEEECCCCCCCCHHHHHHHHHhccccccCCCeEEEEeccCCCCCCCcCcHHHHHHHHHHHh
Confidence            998888899999999875 44456788888875 6799999999988665 9999999999999999888764

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.3e-65  Score=536.58  Aligned_cols=522  Identities=27%  Similarity=0.437  Sum_probs=419.0

Q ss_pred             cCCCCCChHHHHHHHHHHcCCceEEEE--CC--eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHh
Q 008535           15 ANNVPLTPIDFLERAAHVYGDATSIIY--GT--VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAV   90 (562)
Q Consensus        15 ~~~~~~ti~~~l~~~a~~~p~~~a~~~--~~--~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~   90 (562)
                      +-..|+|+.++|+++++.+|+++++..  .+  +++||+||.++++++|++|.+.|+++||+|+++++|+++++++++||
T Consensus         5 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la~   84 (542)
T PRK06018          5 MQDWPLLCHRIIDHAARIHGNREVVTRSVEGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGI   84 (542)
T ss_pred             hhcCCCCHHHHHHHHHHhCCCceEEEeeccCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHH
Confidence            345678999999999999999999974  22  67999999999999999999999999999999999999999999999


Q ss_pred             hhccceEEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCC
Q 008535           91 PMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNF  170 (562)
Q Consensus        91 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (562)
                      +++|++++|+++.++.+++..+++.+++++++++.+..+.+.+.......      ...++.+.+.....       ...
T Consensus        85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~-------~~~  151 (542)
T PRK06018         85 MGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLPS------VERYVVLTDAAHMP-------QTT  151 (542)
T ss_pred             HhcCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhhCCC------ccEEEEeccccccc-------ccC
Confidence            99999999999999999999999999999999998877776655433221      22222222211100       000


Q ss_pred             CCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHH--HHHHHhhcCCCCCCeeeeecccc
Q 008535          171 PSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLN--SLAQISRCDVRDMPVFLWTLDMF  248 (562)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~--~~~~~~~~~~~~~~~~l~~~pl~  248 (562)
                      ..+...+.++........ ......++++++++|||||||.||+|.+||++.+..  .......+++..+|+++...|++
T Consensus       152 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~  230 (542)
T PRK06018        152 LKNAVAYEEWIAEADGDF-AWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLF  230 (542)
T ss_pred             ccccccHHHHhccCCccc-CcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCCCCCCEEEEecCHH
Confidence            012234444444332221 112245678999999999999999999999974322  22334566788999999999999


Q ss_pred             cchhhHHHHHhHhhceEEEEec-cCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHH
Q 008535          249 RCNGWCCTWAMAAVGGINVCIR-TVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEV  327 (562)
Q Consensus       249 ~~~gl~~~~~~~~~g~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~  327 (562)
                      |.+++...+.++..|+++++.. .+++..+++.++++++|++.++|++++.|.+.......+++++|.++++|++++++.
T Consensus       231 h~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~  310 (542)
T PRK06018        231 HANSWGIAFSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGLKLPHLKMVVCGGSAMPRSM  310 (542)
T ss_pred             HHhhhHHHHhhhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccCCCcccceEEEEcCCCCCHHH
Confidence            9999887777888888887764 578899999999999999999999999998876655567889999999999999999


Q ss_pred             HHHHHhcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEE
Q 008535          328 LEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEV  407 (562)
Q Consensus       328 ~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel  407 (562)
                      .+.|++++.++++.||+||++.+++.+.......... ...........|.+.++. .++|.+. ++..++.++++.|||
T Consensus       311 ~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~G~~~~g~-~i~v~d~-~~~~~~~~~~~~Gel  387 (542)
T PRK06018        311 IKAFEDMGVEVRHAWGMTEMSPLGTLAALKPPFSKLP-GDARLDVLQKQGYPPFGV-EMKITDD-AGKELPWDGKTFGRL  387 (542)
T ss_pred             HHHHHHhCCCeEeeecccccCcccccccCccccccCC-chhhhhccccCCCCCCCc-EEEEECC-CCCCCCCCCCceeEE
Confidence            9999888899999999999987765443221111100 000111123567777666 7777775 677777765567999


Q ss_pred             EEcchhhhhhhcCCchhhHhhhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEe
Q 008535          408 MFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVG  487 (562)
Q Consensus       408 ~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~  487 (562)
                      +++|+.++.||++...  .....+|||+|||+++++++|.+++.||.+|+|+.+|.+++|.+||..+.++|.|.+++|++
T Consensus       388 ~i~g~~~~~gy~~~~~--~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~  465 (542)
T PRK06018        388 KVRGPAVAAAYYRVDG--EILDDDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIG  465 (542)
T ss_pred             EEecCCcchhhhcCcc--cEecCCcEEEcCCEEEEcCCccEEEEecCCCeEEECCEEECHHHHHHHHHhCCcceeEEEEe
Confidence            9999999999998422  11124789999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhh
Q 008535          488 KVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNA  555 (562)
Q Consensus       488 ~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~  555 (562)
                      .+++..++.+.+++++.++...+.+++.++++++++.+.+|..+.+++ ||+|++||++|++|++.|.+
T Consensus       466 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~L~~~~~~  534 (542)
T PRK06018        466 VYHPKWDERPLLIVQLKPGETATREEILKYMDGKIAKWWMPDDVAFVDAIPHTATGKILKTALREQFKD  534 (542)
T ss_pred             ccCCCcCceeEEEEEeCCCCCCCHHHHHHHHHhhCccccCCcEEEEeccCCCCCcchhhHHHHHHHHhc
Confidence            999988889999999888777788899999999999999999887655 99999999999999999876

>PRK08315 AMP-binding domain protein; Validated

Probab=100.00  E-value=3.2e-65  Score=538.61  Aligned_cols=521  Identities=27%  Similarity=0.417  Sum_probs=422.4

Q ss_pred             cccCCCCCChHHHHHHHHHHcCCceEEEE--CCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHh
Q 008535           13 ASANNVPLTPIDFLERAAHVYGDATSIIY--GTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAV   90 (562)
Q Consensus        13 ~~~~~~~~ti~~~l~~~a~~~p~~~a~~~--~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~   90 (562)
                      .+......||.++|++.++.+|+++|+.+  .++.+||+||.+++.++|+.|.+.|+++||+|+++++|++++++++|||
T Consensus         9 ~~~~~~~~~l~~~l~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~   88 (559)
T PRK08315          9 TDVPLLEQTIGQLLDRTAARYPDREALVYRDQGLRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFAT   88 (559)
T ss_pred             CcCChhhccHHHHHHHHHHHCCCCeEEEEcCCCeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHH
Confidence            45555667999999999999999999988  4568999999999999999999999999999999999999999999999


Q ss_pred             hhccceEEecCCCCCHHHHHHHHhhCCceEEEEeccchH-----HHHHHHhhcCCCCc----C---CCCCceeccCCCCC
Q 008535           91 PMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVE-----VVQNALDILSPNHK----C---DKAPLLVTIPECDH  158 (562)
Q Consensus        91 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-----~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~  158 (562)
                      +++|++++|++|..+.+++..+++.+++++++++.....     .+......+.....    .   .....++.+...  
T Consensus        89 ~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  166 (559)
T PRK08315         89 AKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDE--  166 (559)
T ss_pred             HHhCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeeccc--
Confidence            999999999999999999999999999999999876432     12111111100000    0   000111111110  


Q ss_pred             CCCCcccccCCCCCCCCchhhhhhcccC----c-cccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhc
Q 008535          159 YQPSTCSVANNFPSGSLDYNDLLEMGKA----D-FEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRC  233 (562)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~  233 (562)
                                 ...+...+.++......    . ........++++++++|||||||.||+|.+||+++..+.......+
T Consensus       167 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~  235 (559)
T PRK08315        167 -----------KHPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAM  235 (559)
T ss_pred             -----------CCcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhc
Confidence                       01122334443322210    0 0011123467899999999999999999999999998888888888


Q ss_pred             CCCCCCeeeeecccccchhhHH-HHHhHhhceEEEEe-ccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhcccccccccc
Q 008535          234 DVRDMPVFLWTLDMFRCNGWCC-TWAMAAVGGINVCI-RTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQ  311 (562)
Q Consensus       234 ~~~~~~~~l~~~pl~~~~gl~~-~~~~~~~g~~~v~~-~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~  311 (562)
                      ++.++|+++..+|++|.+++.. .+.++..|+++++. ..+++..+++.+.++++|+++++|.++..++.........++
T Consensus       236 ~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~  315 (559)
T PRK08315        236 KLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFARFDLS  315 (559)
T ss_pred             CCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccCCCCch
Confidence            9999999999999999999865 55666777777744 468999999999999999999999999999887665566788


Q ss_pred             ceEEEEEeCCCChHHHHHHHH-hcCC-eeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceec
Q 008535          312 RKVIIVIAGVLPTIEVLEQVA-NFGF-NIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVK  389 (562)
Q Consensus       312 ~l~~i~~~g~~l~~~~~~~~~-~~~~-~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~  389 (562)
                      ++|.++++|++++.+..+.+. .++. ++++.||+||++.+++.......         .......+|.|.++. .++++
T Consensus       316 ~lr~~~~~G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~---------~~~~~~~vG~p~~~~-~v~i~  385 (559)
T PRK08315        316 SLRTGIMAGSPCPIEVMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTDDP---------LEKRVTTVGRALPHL-EVKIV  385 (559)
T ss_pred             hhheeEecCCCCCHHHHHHHHHHcCCcceeEEEcccccccceeecCcccc---------hhhccCCCCccCCCc-EEEEE
Confidence            999999999999999998887 5555 49999999999876554322111         011235678888777 88888


Q ss_pred             ccCCcccccCCCCceeEEEEcchhhhhhhcCCchhhHhhh-ccceeeeCceeEEcCCCcEEEeccccceeecCCeEechH
Q 008535          390 QQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAF-RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSL  468 (562)
Q Consensus       390 ~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~  468 (562)
                      +.++++.++.+  +.|||+|+|+.++.||++++..+...| .++||+|||+|+++++|.+++.||.+|+|+++|.+++|.
T Consensus       386 d~~~~~~~~~g--~~GEl~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~d~~i~~~G~~v~~~  463 (559)
T PRK08315        386 DPETGETVPRG--EQGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPR  463 (559)
T ss_pred             cCccCCcCCCC--CceEEEEECchhhhhhcCChhHHhhcCCCCCCEEccceEEEcCCceEEEEeeccceEEECCEEEcHH
Confidence            88768888766  679999999999999999999888887 688999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHH
Q 008535          469 EVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKF  547 (562)
Q Consensus       469 ~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~  547 (562)
                      +||++|.++++|.+++|++.+++..++.++++|+..++...+.++++++++++++.+++|..+.+++ ||+|++||++|.
T Consensus       464 eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GK~~r~  543 (559)
T PRK08315        464 EIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPGATLTEEDVRDFCRGKIAHYKIPRYIRFVDEFPMTVTGKIQKF  543 (559)
T ss_pred             HHHHHHHhCCCceEEEEEecCCCCCCeEEEEEEEeCCCCCCCHHHHHHHHHhhcccccCCcEEEEcccCCCCCCCceeHH
Confidence            9999999999999999999998887888999998877666678899999999999999999988665 999999999999


Q ss_pred             HHhhhhhhhcc
Q 008535          548 VLRGKVNATAV  558 (562)
Q Consensus       548 ~l~~~~~~~~~  558 (562)
                      +|++++....+
T Consensus       544 ~L~~~~~~~~~  554 (559)
T PRK08315        544 KMREMMIEELG  554 (559)
T ss_pred             HHHHHHHhhhc
Confidence            99998776543

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.5e-66  Score=548.12  Aligned_cols=512  Identities=17%  Similarity=0.226  Sum_probs=389.9

Q ss_pred             CCChHHHHHHHHHHcCCceEEEEC--C---eeccHHHHHHHHHHHHHHHHHc---CCCCC-----------CEEEEEcCC
Q 008535           19 PLTPIDFLERAAHVYGDATSIIYG--T---VRFSWRQTHQICLKLASALAQL---KISRG-----------DIVAAMAPN   79 (562)
Q Consensus        19 ~~ti~~~l~~~a~~~p~~~a~~~~--~---~~~Ty~el~~~~~~~a~~L~~~---gv~~g-----------d~V~i~~~~   79 (562)
                      -.||.++|.++++.+|+++|+.+.  +   +.+||+||.+++.++|++|.+.   |+++|           |+|+++++|
T Consensus        60 ~~~l~~~l~~~~~~~p~~~Al~~~~~g~~~~~~Ty~el~~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~~N  139 (746)
T PTZ00342         60 YKHIMKLLLEKYKLNNNKIAIVEHSCGEPQNYITYGNFFKKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGSN  139 (746)
T ss_pred             cchHHHHHHHHHhhcCCceeEeccCCCCCceeeeHHHHHHHHHHHHHHHHHHhhcCCCcCccccccccccccEEEEEcCC
Confidence            459999999999999999999873  2   6799999999999999999974   99999           999999999


Q ss_pred             cHHHHHHHHHhhhccceEEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCC
Q 008535           80 IPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHY  159 (562)
Q Consensus        80 ~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (562)
                      +++|+++++||+++|++.+|+++.++.+++.++++++++++++++.+..+.+......++.      ...++.++.....
T Consensus       140 ~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~------l~~ii~~~~~~~~  213 (746)
T PTZ00342        140 SINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLERKNELPH------LKKLIILDTLIKS  213 (746)
T ss_pred             CHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHHHHhhccCCC------ceEEEEECCCCcc
Confidence            9999999999999999999999999999999999999999999987766665544333221      3445555431110


Q ss_pred             C-----------------CCcccc------------cCCCC-------------------------CCCCchhhhhhccc
Q 008535          160 Q-----------------PSTCSV------------ANNFP-------------------------SGSLDYNDLLEMGK  185 (562)
Q Consensus       160 ~-----------------~~~~~~------------~~~~~-------------------------~~~~~~~~~~~~~~  185 (562)
                      .                 ......            .....                         .....+.++.+...
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  293 (746)
T PTZ00342        214 KEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKLGISIILFDDMTKNKT  293 (746)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHhhcCCCEEEEHHHHHhhcc
Confidence            0                 000000            00000                         00011222221111


Q ss_pred             CccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhc--CCCCCCeeeeecccccchhhHHHHHhHhhc
Q 008535          186 ADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRC--DVRDMPVFLWTLDMFRCNGWCCTWAMAAVG  263 (562)
Q Consensus       186 ~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~--~~~~~~~~l~~~pl~~~~gl~~~~~~~~~g  263 (562)
                      . .....+..++|+++|+|||||||.||||++||+++.+.+.......  .....+++++.+|++|.+++...+.+++.|
T Consensus       294 ~-~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL~Hi~~~~~~~~~l~~G  372 (746)
T PTZ00342        294 T-NYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIYERVIAYLSFMLG  372 (746)
T ss_pred             c-CCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccCCCCCeEEEeCcHHHHHHHHHHHHHHHcC
Confidence            1 1112234678999999999999999999999999988876554321  233568999999999999998888888889


Q ss_pred             eEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhcc--------cccc----------------------------
Q 008535          264 GINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANAS--------ASDQ----------------------------  307 (562)
Q Consensus       264 ~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~--------~~~~----------------------------  307 (562)
                      +++++.+. ++..+++.|++++||+++++|.++..|....        ...+                            
T Consensus       373 ~~i~~~~~-~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~v  451 (746)
T PTZ00342        373 GTINIWSK-DINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGFSKFLEGITHI  451 (746)
T ss_pred             CEEEEeCC-CHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHH
Confidence            99888765 8999999999999999999999999987521        0000                            


Q ss_pred             ------ccccceEEEEEeCCCChHHHHHHHH-hcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccc
Q 008535          308 ------NQLQRKVIIVIAGVLPTIEVLEQVA-NFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNN  380 (562)
Q Consensus       308 ------~~l~~l~~i~~~g~~l~~~~~~~~~-~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  380 (562)
                            ...+++|.+++||+++++++.+.|+ .+|++++++||+||+++.++....            .......+|.|.
T Consensus       452 ~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g~~i~~gYGlTEt~~~~~~~~~------------~~~~~gsvG~p~  519 (746)
T PTZ00342        452 SSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPIFVQHA------------DDNNTESIGGPI  519 (746)
T ss_pred             HHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcCCCEEEeeccCcccceeeeccC------------CCCCcccccCcC
Confidence                  0025899999999999999999998 579999999999999776554221            011235678776


Q ss_pred             -cccccceecccCCcccccCCCCceeEEEEcchhhhhhhcCCchhhHhhhc-cceeeeCceeEEcCCCcEEEecccccee
Q 008535          381 -LLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFR-NGWYHTGDLAVRNPDGYVQMKDRRKDII  458 (562)
Q Consensus       381 -~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~GR~~d~i  458 (562)
                       ++. .+++++.++......+  ..|||+++||.++.|||++|+.|.+.|. +|||+|||+|++|+||+++++||.+|+|
T Consensus       520 ~pg~-e~ki~d~~~~~~~~~~--~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~~TGDig~~d~dG~l~i~gR~kdlI  596 (746)
T PTZ00342        520 SPNT-KYKVRTWETYKATDTL--PKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINKNGSLTFLDRSKGLV  596 (746)
T ss_pred             CCcE-EEEEecccccccCCCC--CceEEEEecCcccccccCChhhhhhhcCcCCcccCCcEEEECCCCeEEEEccCCCeE
Confidence             665 7888775443332222  4599999999999999999999999995 9999999999999999999999999999


Q ss_pred             e-cCCeEechHHHHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCC----------------CC-CCH---------
Q 008535          459 I-SGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEG----------------RE-ASP---------  511 (562)
Q Consensus       459 ~-~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~----------------~~-~~~---------  511 (562)
                      | .+|++|+|.+||+++.++|.|.+++|++.+.   ...++|+|++++.                -. .+.         
T Consensus       597 kls~Ge~I~p~eIE~~l~~~p~V~~~~VvG~~~---~~~~~Alvv~d~~~~~~~a~~~~~~~~~~i~~~~~~~~~~~~~~  673 (746)
T PTZ00342        597 KLSQGEYIETDMLNNLYSQISFINFCVVYGDDS---MDGPLAIISVDKYLLFKCLKDDNMLESTGINEKNYLEKLTDETI  673 (746)
T ss_pred             EeCCCEEEchHHHHHHHhcCCCccEEEEEccCC---ccccEEEEECCHHHHHHHHHhcCCccccccCcccHHHHhhhhhh
Confidence            9 6899999999999999999999999998632   2358888887641                00 010         


Q ss_pred             --HHHHHH----H-----hccCCCCCCCcEEEeec--cc----CCCCCcchHHHHhhhhhhh
Q 008535          512 --EELVTF----C-----GDELPSCMVPRAIFFED--IP----VNSTGKVQKFVLRGKVNAT  556 (562)
Q Consensus       512 --~~l~~~----~-----~~~l~~~~~p~~i~~~~--lP----~t~~GKv~r~~l~~~~~~~  556 (562)
                        .++.+.    +     +..++.+.+++.+.+.+  +.    +|++.|+.|+.+.+.|...
T Consensus       674 ~~~~~~~~v~~~~~~~~~~~~l~~~e~i~~~~l~~~~~t~~~~lTpt~KlkR~~v~~~y~~~  735 (746)
T PTZ00342        674 NNNIYVDYVKGKMLEVYKKTNLNRYNIINDIYLTSKVWDTNNYLTPTFKVKRFYVFKDYAFF  735 (746)
T ss_pred             ccHHHHHHHHHHHHHHHHHhCCccceeeeeEEEecCCCCCCCccChhhhhhHHHHHHHHHHH
Confidence              011221    1     23589999999888765  32    8999999999999988754

>PRK13388 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.2e-65  Score=535.37  Aligned_cols=488  Identities=23%  Similarity=0.318  Sum_probs=391.9

Q ss_pred             CCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCcHHHHHHHHHhhhccceE
Q 008535           19 PLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKI-SRGDIVAAMAPNIPALYKLHFAVPMAGAVL   97 (562)
Q Consensus        19 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv-~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~   97 (562)
                      ..|+.++|.+++  .|+++|+++.+.++||.||.+++.++|..|.+.|+ ++||+|+++++|+++++++++||+++|+++
T Consensus         2 ~~~~~~~l~~~~--~p~~~Al~~~~~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA~~~~Ga~~   79 (540)
T PRK13388          2 RDTIAQLLRDRA--GDDTIAVRYGDRTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAAAALGGYVL   79 (540)
T ss_pred             chhHHHHHHhhc--cCCceEEEECCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHHHHhCCCEE
Confidence            357889998764  79999999999999999999999999999999999 899999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCch
Q 008535           98 SALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDY  177 (562)
Q Consensus        98 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (562)
                      +|++|.++.+++..+++.+++++++++.+..+.+....  .+       ....+.++.                   ..+
T Consensus        80 v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~--~~-------~~~~i~~~~-------------------~~~  131 (540)
T PRK13388         80 VGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLD--LP-------GVRVLDVDT-------------------PAY  131 (540)
T ss_pred             EEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhc--cc-------CceEEEccc-------------------hhh
Confidence            99999999999999999999999999877655443321  00       111222211                   011


Q ss_pred             hhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHHHH
Q 008535          178 NDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTW  257 (562)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~~~  257 (562)
                      .+++...... .......++++++++|||||||.||||.++|+++..........+++..+|++++.+|++|.+++...+
T Consensus       132 ~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~  210 (540)
T PRK13388        132 AELVAAAGAL-TPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGW  210 (540)
T ss_pred             hhhhccccCc-CCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHhCCCCCCEEEEeeCchhhcchHHHH
Confidence            1221111111 111124568999999999999999999999999988888888888999999999999999999887644


Q ss_pred             -HhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHH-hcC
Q 008535          258 -AMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVA-NFG  335 (562)
Q Consensus       258 -~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~-~~~  335 (562)
                       .++..|+++++.+.+++..+++.+++++++++..+|..+..++...........+++.+ . |+.+.++..+.|. .++
T Consensus       211 ~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~~~~~~~~l~~~-~-G~~~~~~~~~~~~~~~~  288 (540)
T PRK13388        211 APAVASGAAVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATPERPDDADNPLRVA-F-GNEASPRDIAEFSRRFG  288 (540)
T ss_pred             HHHHHcCcEEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCCccccccceEEE-E-CCCCCHHHHHHHHHHhC
Confidence             45777888887777899999999999999999999999999987654332333456643 3 4455666666666 568


Q ss_pred             CeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccC------------CcccccCCCCc
Q 008535          336 FNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQN------------TMKSVPHDGKT  403 (562)
Q Consensus       336 ~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~------------~~~~~~~~~~~  403 (562)
                      .++++.||+||++.++.....              .....+|.|.+   ++++.+.+            ++..+.. +++
T Consensus       289 ~~l~~~YG~tE~~~~~~~~~~--------------~~~~~vG~p~~---g~~i~~~~~~~~~~~~~~d~~g~~~~~-~~~  350 (540)
T PRK13388        289 CQVEDGYGSSEGAVIVVREPG--------------TPPGSIGRGAP---GVAIYNPETLTECAVARFDAHGALLNA-DEA  350 (540)
T ss_pred             CceecccccccccceeecCCC--------------CCCCCCCCCCC---CcEEEcCCCCccccceeccCccccccC-CCc
Confidence            999999999999866543210              01123454443   34544332            2222222 235


Q ss_pred             eeEEEEc-chhhhhhhcCCchhhHhhhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCcee
Q 008535          404 LGEVMFR-ANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLE  482 (562)
Q Consensus       404 ~Gel~v~-~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~  482 (562)
                      .|||+++ |++++.||+++++.+.+.|.+|||+|||+|++|++|++++.||.+|+||++|.+|+|.+||++|.++|+|.+
T Consensus       351 ~GEl~v~~g~~~~~gY~~~~~~t~~~~~~g~~~TGD~~~~~~dg~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~  430 (540)
T PRK13388        351 IGELVNTAGAGFFEGYYNNPEATAERMRHGMYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAINR  430 (540)
T ss_pred             ceEEEEecCCcccccccCChHHHHHHhhcCceeccceEEEcCCCcEEEeccCCceEEECCEEeCHHHHHHHHHhCCCceE
Confidence            7999998 999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhcc--CCCCCCCcEEEee-cccCCCCCcchHHHHhhhhhhhc
Q 008535          483 AAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDE--LPSCMVPRAIFFE-DIPVNSTGKVQKFVLRGKVNATA  557 (562)
Q Consensus       483 ~~v~~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~--l~~~~~p~~i~~~-~lP~t~~GKv~r~~l~~~~~~~~  557 (562)
                      |+|++.+++..|+.+++++++.++...+.++++++++.+  ++.+++|..+++. +||+|++||++|++|++......
T Consensus       431 ~~v~g~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~l~~~~~l~~~~~P~~~~~v~~iP~t~~GKv~R~~L~~~~~~~~  508 (540)
T PRK13388        431 VAVYAVPDERVGDQVMAALVLRDGATFDPDAFAAFLAAQPDLGTKAWPRYVRIAADLPSTATNKVLKRELIAQGWATG  508 (540)
T ss_pred             EEEEEccCCCCCceeEEEEEECCCCcCCHHHHHHHHHhhccCCcccCCcEEEEeccCCCCCcceeeHHhHHHhccCCC
Confidence            999999998888888899988877767788999999764  9999999998864 59999999999999999876654

>PRK12583 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=7.1e-65  Score=536.15  Aligned_cols=517  Identities=28%  Similarity=0.434  Sum_probs=417.1

Q ss_pred             ccCCCCCChHHHHHHHHHHcCCceEEEE--CCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhh
Q 008535           14 SANNVPLTPIDFLERAAHVYGDATSIIY--GTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVP   91 (562)
Q Consensus        14 ~~~~~~~ti~~~l~~~a~~~p~~~a~~~--~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~   91 (562)
                      +......++.++|++.++++|+++|+++  .+..+||+||.+++.++|++|.+.|+++||+|+++++|+++++++++||+
T Consensus        12 ~~~~~~~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a~~   91 (558)
T PRK12583         12 DKPLLTQTIGDAFDATVARFPDREALVVRHQALRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATA   91 (558)
T ss_pred             CCCcccCcHHHHHHHHHHHCCCCeEEEecCCCcEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHH
Confidence            3444556899999999999999999987  44689999999999999999999999999999999999999999999999


Q ss_pred             hccceEEecCCCCCHHHHHHHHhhCCceEEEEeccch-----HHHHHHHhhcCCCC----cCC---CCCceeccCCCCCC
Q 008535           92 MAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFV-----EVVQNALDILSPNH----KCD---KAPLLVTIPECDHY  159 (562)
Q Consensus        92 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~  159 (562)
                      ++|++++++++.++.+++..+++++++++++++....     ..+......+....    ...   ....++......  
T Consensus        92 ~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  169 (558)
T PRK12583         92 RIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAP--  169 (558)
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecCCC--
Confidence            9999999999999999999999999999999986532     12222111111000    000   001111111000  


Q ss_pred             CCCcccccCCCCCCCCchhhhhhcccCc-----cccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcC
Q 008535          160 QPSTCSVANNFPSGSLDYNDLLEMGKAD-----FEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCD  234 (562)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~  234 (562)
                                 ..+...|.+.....+..     ........++++++++|||||||.||+|.++|+++..++......++
T Consensus       170 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~  238 (558)
T PRK12583        170 -----------PPGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLG  238 (558)
T ss_pred             -----------CccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhC
Confidence                       01122333332221110     11112235678999999999999999999999999888888888889


Q ss_pred             CCCCCeeeeecccccchhhHH-HHHhHhhceEEEEe-ccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccc
Q 008535          235 VRDMPVFLWTLDMFRCNGWCC-TWAMAAVGGINVCI-RTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQR  312 (562)
Q Consensus       235 ~~~~~~~l~~~pl~~~~gl~~-~~~~~~~g~~~v~~-~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~  312 (562)
                      +..+|++++..|++|.+|+.. .+.++..|+++++. ...++..+++.++++++|+++++|.++..++.........+++
T Consensus       239 ~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~  318 (558)
T PRK12583        239 LTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGNFDLSS  318 (558)
T ss_pred             CCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccccCCCchh
Confidence            999999999999999999865 45556666666644 3578999999999999999999999999888776555567889


Q ss_pred             eEEEEEeCCCChHHHHHHHH-hcC-CeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecc
Q 008535          313 KVIIVIAGVLPTIEVLEQVA-NFG-FNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQ  390 (562)
Q Consensus       313 l~~i~~~g~~l~~~~~~~~~-~~~-~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~  390 (562)
                      +|.+++||++++++..+.+. .++ ..+++.||+||++++++.+.....         .......+|.|.++. .+++++
T Consensus       319 lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~---------~~~~~~~vG~p~~~~-~~~i~d  388 (558)
T PRK12583        319 LRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADD---------LERRVETVGRTQPHL-EVKVVD  388 (558)
T ss_pred             heEEEecCCCCCHHHHHHHHHHcCCcceeccccccccccceeccCcccc---------cccccCCCCccCCCC-eEEEEC
Confidence            99999999999999999887 554 479999999999877655322111         112235678887776 888888


Q ss_pred             cCCcccccCCCCceeEEEEcchhhhhhhcCCchhhHhhh-ccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHH
Q 008535          391 QNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAF-RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLE  469 (562)
Q Consensus       391 ~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~  469 (562)
                      .+ +.+++.+  +.|||+++|+.++.||++++..+...| .++||+|||+|+++++|.+++.||.+|+|+++|.+|+|.+
T Consensus       389 ~~-~~~~~~g--~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~dg~l~i~GR~~~~i~~~G~~v~~~~  465 (558)
T PRK12583        389 PD-GATVPRG--EIGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPRE  465 (558)
T ss_pred             CC-CCCCCCC--CeeEEEEEeCccchhhcCChHHHHhhcCCCCCeeccceEEECCCccEEEEecccceeEECCEEeCHHH
Confidence            75 6777665  679999999999999999999988887 6899999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHH
Q 008535          470 VEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFV  548 (562)
Q Consensus       470 iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~  548 (562)
                      ||++|.++++|.+++|+++++...++.++++++..++...+.++++++++++++.+++|..+++++ ||+|++||++|++
T Consensus       466 IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~~~~~L~~~~~P~~i~~v~~lP~t~sGK~~r~~  545 (558)
T PRK12583        466 IEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPGHAASEEELREFCKARIAHFKVPRYFRFVDEFPMTVTGKVQKFR  545 (558)
T ss_pred             HHHHHHhCCCeeEEEEEeeecCCCCcEEEEEEEECCCCCCCHHHHHHHHHhhcccCcCCcEEEEeccCCCCCCCCccHHH
Confidence            999999999999999999999888899999999887766778899999999999999999888654 9999999999999


Q ss_pred             Hhhhhhhh
Q 008535          549 LRGKVNAT  556 (562)
Q Consensus       549 l~~~~~~~  556 (562)
                      |+++..+.
T Consensus       546 L~~~~~~~  553 (558)
T PRK12583        546 MREISIEE  553 (558)
T ss_pred             HHHHHHhh
Confidence            99987665

>PRK06164 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.1e-65  Score=535.27  Aligned_cols=518  Identities=24%  Similarity=0.280  Sum_probs=412.0

Q ss_pred             CCCCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccce
Q 008535           17 NVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAV   96 (562)
Q Consensus        17 ~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~   96 (562)
                      ....++.++|.+.++.+|+++|+++.+.++||+||.+++.++|+.|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus         7 ~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~la~~~~G~~   86 (540)
T PRK06164          7 PRADTLASLLDAHARARPDAVALIDEDRPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGAT   86 (540)
T ss_pred             cCCCCHHHHHHHHHHhCCCCeEEecCCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHHHHHHHhCcE
Confidence            34558999999999999999999998899999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHhhCCceEEEEeccchHH-HHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCC
Q 008535           97 LSALNTRLDSATLASILRQLEAKIIFVDYQFVEV-VQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSL  175 (562)
Q Consensus        97 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (562)
                      ++|+++..+.+++.++++.+++++++++.+.... +........... ......++.++......+.      ..   ..
T Consensus        87 ~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~---~~  156 (540)
T PRK06164         87 VIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDA-LPPLRAIAVVDDAADATPA------PA---PG  156 (540)
T ss_pred             EEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccc-cCCcceEEEeccCcccCCC------CC---cc
Confidence            9999999999999999999999999998764211 111111111000 0002223333211100000      00   00


Q ss_pred             chhhhhhccc---CccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchh
Q 008535          176 DYNDLLEMGK---ADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNG  252 (562)
Q Consensus       176 ~~~~~~~~~~---~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g  252 (562)
                      .+........   ..........++++++++|||||||.||+|.++|+++..+.......+++..++++++.+|++|.+|
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g  236 (540)
T PRK06164        157 ARVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLLAALPFCGVFG  236 (540)
T ss_pred             cccccccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEcCCchhHHH
Confidence            0000000000   0000011234678999999999999999999999999998888888889999999999999999999


Q ss_pred             hHHHHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeC-CCChHHHHHHH
Q 008535          253 WCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAG-VLPTIEVLEQV  331 (562)
Q Consensus       253 l~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g-~~l~~~~~~~~  331 (562)
                      +...+.++..|+++++.+.+++..+++.++++++|+++++|.+++.|.+.. .....+++++.+..+| .....+..+++
T Consensus       237 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~  315 (540)
T PRK06164        237 FSTLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTA-GERADFPSARLFGFASFAPALGELAALA  315 (540)
T ss_pred             HHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhh-cccCCCcceeeeeeccCCcchHHHHHHH
Confidence            988888899999999888899999999999999999999999999998872 2345678888887666 55666777777


Q ss_pred             HhcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcc
Q 008535          332 ANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRA  411 (562)
Q Consensus       332 ~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~  411 (562)
                      ...++++++.||+||+++.++......         .........|.+..+...+++.+.+++.+++.+  +.|||+|+|
T Consensus       316 ~~~~~~~~~~YG~tE~~~~~~~~~~~~---------~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~g--~~Gel~v~g  384 (540)
T PRK06164        316 RARGVPLTGLYGSSEVQALVALQPATD---------PVSVRIEGGGRPASPEARVRARDPQDGALLPDG--ESGEIEIRA  384 (540)
T ss_pred             hhcCCceecceeeccccceeeccCCCC---------CCcceeccCccccCCCeEEEEecCCCCcCCCCC--CeeEEEEec
Confidence            766899999999999987655432111         011111234555433337788887777777666  779999999


Q ss_pred             hhhhhhhcCCchhhHhhhc-cceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeC
Q 008535          412 NTVMLGYFKNPKATEEAFR-NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVD  490 (562)
Q Consensus       412 ~~~~~gy~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~  490 (562)
                      ++++.||++++..+...|. +|||+|||+|++|++|.+++.||.+|+|+++|.+++|.+||+.|..+++|.+++|++.+.
T Consensus       385 ~~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~  464 (540)
T PRK06164        385 PSLMRGYLDNPDATARALTDDGYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGATR  464 (540)
T ss_pred             ccccccccCCchhhhhcccCCCceecCCeEEEcCCceEEEEeecCCeEEECCEEcCHHHHHHHHHhCCCceeEEEEecCC
Confidence            9999999999999998885 789999999999999999999999999999999999999999999999999999999874


Q ss_pred             CCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCC---cchHHHHhhhhhhhc
Q 008535          491 DQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTG---KVQKFVLRGKVNATA  557 (562)
Q Consensus       491 ~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~G---Kv~r~~l~~~~~~~~  557 (562)
                       ..++.+++++++.++...+.+++.++++++++.+++|..+.+.+ +|+|++|   |++|+.|++.+++..
T Consensus       465 -~~~~~~~~~vv~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~g~~~Ki~r~~L~~~~~~~~  534 (540)
T PRK06164        465 -DGKTVPVAFVIPTDGASPDEAGLMAACREALAGFKVPARVQVVEAFPVTESANGAKIQKHRLREMAQARL  534 (540)
T ss_pred             -CCceeEEEEEEeCCCCCCCHHHHHHHHHhhcccCcCCcEEEEecCCCCCCCCccccccHHHHHHHHHHhh
Confidence             44578889998877766788999999999999999999887655 9999999   999999999876553

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.7e-65  Score=538.60  Aligned_cols=525  Identities=26%  Similarity=0.360  Sum_probs=417.2

Q ss_pred             cCCCCCChHHHHHHHHHHcCCceEEEECC---eeccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHh
Q 008535           15 ANNVPLTPIDFLERAAHVYGDATSIIYGT---VRFSWRQTHQICLKLASALAQ-LKISRGDIVAAMAPNIPALYKLHFAV   90 (562)
Q Consensus        15 ~~~~~~ti~~~l~~~a~~~p~~~a~~~~~---~~~Ty~el~~~~~~~a~~L~~-~gv~~gd~V~i~~~~~~~~~~~~lA~   90 (562)
                      +.+.+.|+.++|++.+..+|++.|+.+.+   +.+||+||.+++.++|.+|.+ .|+++||+|+++++|+++++++++||
T Consensus         5 ~~~~~~~~~~~l~~~a~~~~~~~a~~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA~   84 (576)
T PRK05620          5 MQDVPLSLTRILEYGSTVHGDTTVTTWGGAEQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAV   84 (576)
T ss_pred             hhcCCCcHHHHHHHHHHhCCCceEEEEcCCceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence            45567899999999999999999988753   789999999999999999987 89999999999999999999999999


Q ss_pred             hhccceEEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCC
Q 008535           91 PMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNF  170 (562)
Q Consensus        91 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (562)
                      +++|++++++++..+.+++.++++.+++++++++....+.+......+..      ...++.++.......   ......
T Consensus        85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~---~~~~~~  155 (576)
T PRK05620         85 ACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPC------VRAVVFIGPSDADSA---AAHMPE  155 (576)
T ss_pred             HhcCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhhCcc------ccEEEEecCcccccc---hhcccc
Confidence            99999999999999999999999999999999998877766655443221      222333322111000   000001


Q ss_pred             CCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHH--HhhcCCCCCCeeeeecccc
Q 008535          171 PSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQ--ISRCDVRDMPVFLWTLDMF  248 (562)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~--~~~~~~~~~~~~l~~~pl~  248 (562)
                      .....+|.++.+....... .....++++++++|||||||.||||.++|+++.......  ...+.+..++++++.+|++
T Consensus       156 ~~~~~~~~~l~~~~~~~~~-~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~pl~  234 (576)
T PRK05620        156 GIKVYSYEALLDGRSTVYD-WPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIY  234 (576)
T ss_pred             ccccccHHHHhhcCCCcCC-CCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCChH
Confidence            1123456666653322211 123456899999999999999999999999986554432  3356788999999999999


Q ss_pred             cchhhHHHHHhHhhceEEEEec-cCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHH
Q 008535          249 RCNGWCCTWAMAAVGGINVCIR-TVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEV  327 (562)
Q Consensus       249 ~~~gl~~~~~~~~~g~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~  327 (562)
                      |.+++...+.++..|+++++.. .+++..+++.++++++++++++|.++..++...........++|.+++||++++++.
T Consensus       235 h~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~  314 (576)
T PRK05620        235 HVLSWGVPLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNPPERMSLQEIYVGGSAVPPIL  314 (576)
T ss_pred             HhhhhHHHHHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccCcccCceeEEEEcCCCCCHHH
Confidence            9999988888888899888765 579999999999999999999999999887654333344568999999999999999


Q ss_pred             HHHHH-hcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeE
Q 008535          328 LEQVA-NFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGE  406 (562)
Q Consensus       328 ~~~~~-~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Ge  406 (562)
                      .+.|+ .++.++++.||+||++..++........   . ...........|.+.++. .+++++.  +..++..+++.||
T Consensus       315 ~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~---~-~~~~~~~~~~~G~~~~~~-~~~i~~~--g~~~~~~~~~~Ge  387 (576)
T PRK05620        315 IKAWEERYGVDVVHVWGMTETSPVGTVARPPSGV---S-GEARWAYRVSQGRFPASL-EYRIVND--GQVMESTDRNEGE  387 (576)
T ss_pred             HHHHHHHhCCceeeeccccccccceeeeccCCcc---c-cccccccccccCCcCCce-eEEEecC--CccccCCCCCceE
Confidence            99987 5689999999999998766543311100   0 000001123456655555 6677664  5555544346799


Q ss_pred             EEEcchhhhhhhcCCchhh----Hh------------hh-ccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHH
Q 008535          407 VMFRANTVMLGYFKNPKAT----EE------------AF-RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLE  469 (562)
Q Consensus       407 l~v~~~~~~~gy~~~~~~~----~~------------~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~  469 (562)
                      |+++|+.++.||+++++.+    ..            .| .+|||+|||++++++||.+++.||.+|+|+.+|.+++|.+
T Consensus       388 l~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~i~~~e  467 (576)
T PRK05620        388 IQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQ  467 (576)
T ss_pred             EEEEcCcccccccCCccccccccccccccccchhhhcccccCCcEecCceEEEcCCceEEEEechhhhhhcCCEEEcHHH
Confidence            9999999999999998776    22            23 3789999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCCC---CCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcch
Q 008535          470 VEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGRE---ASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQ  545 (562)
Q Consensus       470 iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~---~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~  545 (562)
                      ||..|.++|.|.+++|++.++...++.+++++++.++..   ...++++++++++++.+++|+.+.+++ ||+|++||++
T Consensus       468 IE~~l~~~p~v~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~~P~t~~GKv~  547 (576)
T PRK05620        468 LENYIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIEPTRETAERLRDQLRDRLPNWMLPEYWTFVDEIDKTSVGKFD  547 (576)
T ss_pred             HHHHHhcCCCceEEEEEeccCCCcCceeEEEEEecCCCCcccccHHHHHHHHHhhCccccCCeEEEEeccCCCCCcccCc
Confidence            999999999999999999999988889999988876643   346899999999999999999988655 9999999999


Q ss_pred             HHHHhhhhhhh
Q 008535          546 KFVLRGKVNAT  556 (562)
Q Consensus       546 r~~l~~~~~~~  556 (562)
                      |++|++++++.
T Consensus       548 r~~L~~~~~~~  558 (576)
T PRK05620        548 KKDLRQHLADG  558 (576)
T ss_pred             HHHHHHHHhcC
Confidence            99999998864

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=100.00  E-value=4.4e-65  Score=534.18  Aligned_cols=497  Identities=24%  Similarity=0.313  Sum_probs=407.2

Q ss_pred             CCCChHHHHHHHHHHcCCceEEEE------CCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhh
Q 008535           18 VPLTPIDFLERAAHVYGDATSIIY------GTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVP   91 (562)
Q Consensus        18 ~~~ti~~~l~~~a~~~p~~~a~~~------~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~   91 (562)
                      .+.|+.+++++.++.+|+++|++.      ....+||+||++++.++|.+|.+.|+++||+|+++++|+++++++++||+
T Consensus        20 ~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~   99 (538)
T TIGR03208        20 RDRTINDHFDAAVANCPDKPALTAYRDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACA   99 (538)
T ss_pred             ccCcHHHHHHHHHHHCCCceEEEeecccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence            456899999999999999999986      23689999999999999999999999999999999999999999999999


Q ss_pred             hccceEEecCCCCCHHHHHHHHhhCCceEEEEeccchH-----HHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccc
Q 008535           92 MAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVE-----VVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSV  166 (562)
Q Consensus        92 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (562)
                      ++|++++|+++..+.+++.++++.+++++++++.....     ..........      ....++..+...         
T Consensus       100 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~---------  164 (538)
T TIGR03208       100 RIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLP------ALRQVVVIDGDG---------  164 (538)
T ss_pred             hcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCC------cceEEEEecCCC---------
Confidence            99999999999999999999999999999999876431     1111111111      012233322111         


Q ss_pred             cCCCCCCCCchhhhhhccc----Cc---cccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCC
Q 008535          167 ANNFPSGSLDYNDLLEMGK----AD---FEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMP  239 (562)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~  239 (562)
                             ...+..++....    ..   ........++++++++|||||||.||+|.++|+++..........+++..++
T Consensus       165 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d  237 (538)
T TIGR03208       165 -------DDSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGD  237 (538)
T ss_pred             -------CcCHHHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcCCCCCC
Confidence                   011111111000    00   0001124568999999999999999999999999998888888888899999


Q ss_pred             eeeeecccccchhhH-HHHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEE
Q 008535          240 VFLWTLDMFRCNGWC-CTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVI  318 (562)
Q Consensus       240 ~~l~~~pl~~~~gl~-~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~  318 (562)
                      ++++.+|++|..++. .++.++..|+++++.+.+++..+++.+++++++++.++|.++..+..........++++|.+++
T Consensus       238 ~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~  317 (538)
T TIGR03208       238 VILMASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESGAPVPSLFTFLC  317 (538)
T ss_pred             eEEEeCCchhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccCCCCCcceEEEE
Confidence            999999999998865 4677788899888888889999999999999999999999999988765444456789999999


Q ss_pred             eCCCChHHHHHHHH-hcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccc
Q 008535          319 AGVLPTIEVLEQVA-NFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSV  397 (562)
Q Consensus       319 ~g~~l~~~~~~~~~-~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~  397 (562)
                      ||++++++..+++. .++.++++.||+||++++.+......          .......+|.+.++. .+++++. ++.++
T Consensus       318 gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~----------~~~~~~~~G~~~~g~-~v~i~~~-~~~~~  385 (538)
T TIGR03208       318 AGAPIPGILVERAWELLGALIVSAWGMTENGAVTVTEPDDA----------LEKASTTDGRPLPGV-EVKVIDA-NGAKL  385 (538)
T ss_pred             cCCCCCHHHHHHHHHHcCCeEEeeeccCcCCCccccCcccc----------hhhccCcccccCCCC-EEEEECC-CCCCC
Confidence            99999999999887 57899999999999987654432110          011123567777776 7888875 56666


Q ss_pred             cCCCCceeEEEEcchhhhhhhcCCchhhHhhhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcC
Q 008535          398 PHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSN  477 (562)
Q Consensus       398 ~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~  477 (562)
                      +.+  +.|||+++|+.++.||+++++.+.. ..+|||+|||+|++|++|.+++.||.+|+|+.+|.+|+|.+||++|.++
T Consensus       386 ~~g--~~Gel~v~g~~~~~gy~~~~~~~~~-~~~~~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~  462 (538)
T TIGR03208       386 SQG--ETGRLLVRGCSNFGGYLKRPHLNST-DAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLYQH  462 (538)
T ss_pred             cCC--CCcEEEEecCcccccccCCcccccc-cCCCceeccceEEECCCCcEEEEeccCceEEECCEEECHHHHHHHHhcC
Confidence            655  6799999999999999999877653 3589999999999999999999999999999999999999999999999


Q ss_pred             CCceeEEEEeeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhc-cCCCCCCCcEEEeec-ccCCCCCcchHHHHhh
Q 008535          478 PKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGD-ELPSCMVPRAIFFED-IPVNSTGKVQKFVLRG  551 (562)
Q Consensus       478 ~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~-~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~  551 (562)
                      ++|.+++|++.++...++.+.+++++.++...+.+++.+++++ +++.+++|..+.+++ +|+|++||++|++|++
T Consensus       463 ~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~iP~t~~gKv~r~~L~~  538 (538)
T TIGR03208       463 PAVAQVAIVAYPDERLGERACAVVVPKPGCTLDFAAMVAFLKAQKVALQYIPERLEVVDALPATPAGKIQKFRLRE  538 (538)
T ss_pred             cceeeEEEEeccCCCCCceEEEEEEECCCCCCCHHHHHHHHHhcchhhccCCcEEEEeccCCCCCccccchHhhcC
Confidence            9999999999998888899999999887766788899999985 799999999888655 9999999999999863

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=100.00  E-value=7.1e-65  Score=530.84  Aligned_cols=499  Identities=24%  Similarity=0.369  Sum_probs=407.0

Q ss_pred             CChHHHHHHHHHHcCCceEEEECC-----eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhcc
Q 008535           20 LTPIDFLERAAHVYGDATSIIYGT-----VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAG   94 (562)
Q Consensus        20 ~ti~~~l~~~a~~~p~~~a~~~~~-----~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G   94 (562)
                      .|+.+++++.++++|+++|+.+.+     +.+||.||.++++++|+.|.++|+++||+|+++++|+++++++++||+++|
T Consensus         7 ~~l~~~~~~~a~~~p~~~a~~~~~~~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la~~~~G   86 (517)
T PRK08008          7 QHLRQMWDDLADVYGHKTALIFESSGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIG   86 (517)
T ss_pred             ccHHHHHHHHHHHCCCceEEEcccCCCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence            489999999999999999998754     689999999999999999999999999999999999999999999999999


Q ss_pred             ceEEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCC
Q 008535           95 AVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGS  174 (562)
Q Consensus        95 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (562)
                      ++++++++..+.+++.++++.++++.++++.+....+.+........     ...++.......           ...+.
T Consensus        87 ~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-----------~~~~~  150 (517)
T PRK08008         87 AIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATP-----LRHICLTRVALP-----------ADDGV  150 (517)
T ss_pred             eEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhcccc-----CcEEEEecCCCc-----------ccccc
Confidence            99999999999999999999999999999988776665543322111     222222222110           00122


Q ss_pred             CchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhH
Q 008535          175 LDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWC  254 (562)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~  254 (562)
                      .++.+.............+..++++++++|||||||.||+|.+||.++............+..++++++.+|++|..+..
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  230 (517)
T PRK08008        151 SSFTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQC  230 (517)
T ss_pred             cCHHHHhccCCccccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhcCCCCCCeEEEecCcHHHHHHH
Confidence            33444333322221222234568999999999999999999999999876554443444678899999999999987655


Q ss_pred             -HHHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHH-
Q 008535          255 -CTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVA-  332 (562)
Q Consensus       255 -~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~-  332 (562)
                       ..+.++..|+++++.+.+++..+++.+++++++++.++|.+++.++............++.+++++ .++++....|. 
T Consensus       231 ~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~  309 (517)
T PRK08008        231 TAAMAAFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSANDRQHCLREVMFYL-NLSDQEKDAFEE  309 (517)
T ss_pred             HHHHHHHhcCcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCccccccccceeeEEec-CCCHHHHHHHHH
Confidence             456677788888888889999999999999999999999999999876544434456788777765 67777777776 


Q ss_pred             hcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcc-
Q 008535          333 NFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRA-  411 (562)
Q Consensus       333 ~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~-  411 (562)
                      .++.++++.||+||+++.++......           ......+|.+.++. .+++++. ++.+++.+  +.|||+++| 
T Consensus       310 ~~~~~~~~~YG~tE~~~~~~~~~~~~-----------~~~~~~~G~~~~g~-~~~i~d~-~~~~~~~g--~~Gel~v~g~  374 (517)
T PRK08008        310 RFGVRLLTSYGMTETIVGIIGDRPGD-----------KRRWPSIGRPGFCY-EAEIRDD-HNRPLPAG--EIGEICIKGV  374 (517)
T ss_pred             HhCCeEEeeccccccccccccCCccc-----------cccCCccccCCCCc-EEEEECC-CCCCCCCC--CcceEEEeCC
Confidence            56999999999999976555432110           11224577777776 8888885 67777765  679999998 


Q ss_pred             --hhhhhhhcCCchhhHhhhc-cceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEee
Q 008535          412 --NTVMLGYFKNPKATEEAFR-NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGK  488 (562)
Q Consensus       412 --~~~~~gy~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~  488 (562)
                        +.++.||+++++.+.+.|. +|||+|||+|++|++|.+++.||.+|+||.+|++++|.+||+++.+++.|.+++|++.
T Consensus       375 ~~~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~iE~~l~~~~~v~~~~v~g~  454 (517)
T PRK08008        375 PGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGI  454 (517)
T ss_pred             CCcchhhhHhCChHHHhhcccCCCCeeccceEEECCCCcEEEeecccceEEeCCEEECHHHHHHHHHhCCceeeEEEEcc
Confidence              5899999999999998885 8999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHh
Q 008535          489 VDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLR  550 (562)
Q Consensus       489 ~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~  550 (562)
                      +++..++.+.++|++.++...+.++++++++++++++++|..+++++ ||+|++||++|+.|+
T Consensus       455 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~gK~~r~~l~  517 (517)
T PRK08008        455 KDSIRDEAIKAFVVLNEGETLSEEEFFAFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIKKNLK  517 (517)
T ss_pred             CCCCCCceEEEEEEECCCCCCCHHHHHHHHHhhcccccCCcEEEEeccCCCCCccceehhhcC
Confidence            99888889999999988766778899999999999999999888655 999999999999875

>PRK07514 malonyl-CoA synthase; Validated

Probab=100.00  E-value=5.8e-65  Score=530.18  Aligned_cols=495  Identities=24%  Similarity=0.320  Sum_probs=416.0

Q ss_pred             CChHHHHHHHHHHcCCceEEEE-CCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEE
Q 008535           20 LTPIDFLERAAHVYGDATSIIY-GTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLS   98 (562)
Q Consensus        20 ~ti~~~l~~~a~~~p~~~a~~~-~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v   98 (562)
                      .++.+++.+++ .+|+++|+.+ .+..+||.||.+++.++|..|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus         3 ~~l~~~~~~~~-~~~~~~a~~~~~~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~~~~G~~~v   81 (504)
T PRK07514          3 NNLFDALRAAF-ADRDAPFIETPDGLRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVFL   81 (504)
T ss_pred             ccHHHHHHHHh-hCCCCeEEEeCCCCEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEE
Confidence            48899999999 9999999987 567899999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCchh
Q 008535           99 ALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYN  178 (562)
Q Consensus        99 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (562)
                      |+++..+.+++..+++.+++++++++....+.+........       ...++.++....                ..+.
T Consensus        82 ~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~----------------~~~~  138 (504)
T PRK07514         82 PLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAAG-------APHVETLDADGT----------------GSLL  138 (504)
T ss_pred             ECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhccC-------CceEEEecCCCc----------------ccHH
Confidence            99999999999999999999999999877665544322111       111222221110                0111


Q ss_pred             hhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHH-HH
Q 008535          179 DLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCC-TW  257 (562)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~-~~  257 (562)
                      +........ .......++++++++|||||||.||+|.+||+++...+......+++..+|++++..|++|..++.. .+
T Consensus       139 ~~~~~~~~~-~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~  217 (504)
T PRK07514        139 EAAAAAPDD-FETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATN  217 (504)
T ss_pred             HhhhhcCcc-cCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCccEEEEecchHHHHHHHHHHH
Confidence            111111111 1112345789999999999999999999999999988888778888999999999999999999764 56


Q ss_pred             HhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHH-hcCC
Q 008535          258 AMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVA-NFGF  336 (562)
Q Consensus       258 ~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~-~~~~  336 (562)
                      .++..|+++++.+..++..+++.+  .+++++.++|.++..++.........++++|.+++||+++++++.+.|. .++.
T Consensus       218 ~~l~~G~~~~~~~~~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~  295 (504)
T PRK07514        218 VALLAGASMIFLPKFDPDAVLALM--PRATVMMGVPTFYTRLLQEPRLTREAAAHMRLFISGSAPLLAETHREFQERTGH  295 (504)
T ss_pred             HHHhcCcEEEECCCCCHHHHHHHH--HhheeeecHHHHHHHHHcCCCCCcccccceeeEEecCCCCCHHHHHHHHHHhCC
Confidence            678889999988888999999999  4799999999999999887665566788999999999999999999988 5688


Q ss_pred             eeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhhhh
Q 008535          337 NIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVML  416 (562)
Q Consensus       337 ~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~  416 (562)
                      ++++.||+||++.......            .........|.|.++. .+++.+++++.+++.+  +.|||+++|+.++.
T Consensus       296 ~~~~~YG~tE~~~~~~~~~------------~~~~~~~~~G~~~~~~-~v~i~d~~~~~~~~~g--~~Gel~i~~~~~~~  360 (504)
T PRK07514        296 AILERYGMTETNMNTSNPY------------DGERRAGTVGFPLPGV-SLRVTDPETGAELPPG--EIGMIEVKGPNVFK  360 (504)
T ss_pred             cceeecccccccccccCCc------------cccccCcccccCCCCc-EEEEEECCCCCCCCCC--CceEEEEecCCccc
Confidence            9999999999875443211            0111234567777776 8888886678887766  67999999999999


Q ss_pred             hhcCCchhhHhhhc-cceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCCCCCc
Q 008535          417 GYFKNPKATEEAFR-NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKE  495 (562)
Q Consensus       417 gy~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~  495 (562)
                      ||+++++.+...|. +|||+|||+++++++|.+++.||.||+||++|.+++|.+||+++.++++|.+++|++.++...++
T Consensus       361 gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~  440 (504)
T PRK07514        361 GYWRMPEKTAEEFRADGFFITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGE  440 (504)
T ss_pred             cccCCchhhhhhcccCCCeeecceEEEcCCccEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcCc
Confidence            99999999988886 88999999999999999999999999999999999999999999999999999999998888888


Q ss_pred             eeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhh
Q 008535          496 VPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNAT  556 (562)
Q Consensus       496 ~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~  556 (562)
                      .++++++..++...+.++++++++++++++++|..+.+++ +|+|++||++|++|++.|.+.
T Consensus       441 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~p~t~~gK~~r~~l~~~~~~~  502 (504)
T PRK07514        441 GVTAVVVPKPGAALDEAAILAALKGRLARFKQPKRVFFVDELPRNTMGKVQKNLLREQYADL  502 (504)
T ss_pred             eEEEEEEECCCCCCCHHHHHHHHHhhcccCCCCcEEEEeccCCCCCCcceeHHHHHHHHHhh
Confidence            8999999887766788999999999999999999887655 999999999999999988753

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=100.00  E-value=1.9e-64  Score=528.02  Aligned_cols=499  Identities=24%  Similarity=0.314  Sum_probs=415.4

Q ss_pred             ChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEEec
Q 008535           21 TPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSAL  100 (562)
Q Consensus        21 ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l  100 (562)
                      ++.++|++.++.+|+++|+.+.++++||+||.+++.++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+
T Consensus         1 ~~~~~~~~~~~~~p~~~a~~~~~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l   80 (515)
T TIGR03098         1 LLHHLLEDAAARLPDATALVHHDRTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPI   80 (515)
T ss_pred             CHHHHHHHHHHHCCCCeEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCEEEEeC
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCchhhh
Q 008535          101 NTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDL  180 (562)
Q Consensus       101 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (562)
                      ++..+.+++..+++.+++++++++....+.+........      ....++.+++.....        ........|.++
T Consensus        81 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~--------~~~~~~~~~~~~  146 (515)
T TIGR03098        81 NPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCH------DLRTLILVGEPAHAS--------EGGGESPSWPKL  146 (515)
T ss_pred             CCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhccc------ccceEEEecCccccc--------CCccccccHHHh
Confidence            999999999999999999999998876655544332211      022333333222110        001122344444


Q ss_pred             hhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHHHHHhH
Q 008535          181 LEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAMA  260 (562)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~~~~~~  260 (562)
                      .......  ...+...+++++++|||||||.||+|.+||+++..+.......+++..+|++++.+|++|.+++..++.++
T Consensus       147 ~~~~~~~--~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l  224 (515)
T TIGR03098       147 LALGDAD--PPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYGFNQLTTAF  224 (515)
T ss_pred             hcccccc--ccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHhCCCcccEEEEECchhhHhHHHHHHHHH
Confidence            3322211  11223457899999999999999999999999998888888888899999999999999999999889999


Q ss_pred             hhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHHh-c-CCee
Q 008535          261 AVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVAN-F-GFNI  338 (562)
Q Consensus       261 ~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~~-~-~~~l  338 (562)
                      ..|+++++.+.+++..+++.++++++|++.++|.++..|.+... ....++++|.++++|+++++++.+.+++ + +..+
T Consensus       225 ~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-~~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~  303 (515)
T TIGR03098       225 YVGATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDW-PESAAPSLRYLTNSGGAMPRATLSRLRSFLPNARL  303 (515)
T ss_pred             HcCCEEEEcCCCCHHHHHHHHHHcCCceEecChHHHHHHHhccc-CCCCccceEEEEecCCcCCHHHHHHHHHHCCCCeE
Confidence            99999998888999999999999999999999999999986532 2245778999999999999999999984 4 6789


Q ss_pred             eccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhhhhhh
Q 008535          339 RHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGY  418 (562)
Q Consensus       339 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy  418 (562)
                      ++.||+||++.......           .........+|.+.++. .+++.+. ++..++.+  +.|||+++|+.++.||
T Consensus       304 ~~~YG~tE~~~~~~~~~-----------~~~~~~~~~vG~~~~~~-~~~i~~~-~~~~~~~~--~~Gel~v~g~~~~~gy  368 (515)
T TIGR03098       304 FLMYGLTEAFRSTYLPP-----------EEVDRRPDSIGKAIPNA-EVLVLRE-DGSECAPG--EEGELVHRGALVAMGY  368 (515)
T ss_pred             eeeeccccccceEeccc-----------ccccCCCCCcceecCCC-EEEEECC-CCCCCCCC--CceEEEEcCchhhccc
Confidence            99999999875433211           01112235677777777 7888875 56666554  6799999999999999


Q ss_pred             cCCchhhHhhhc------------cceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEE
Q 008535          419 FKNPKATEEAFR------------NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVV  486 (562)
Q Consensus       419 ~~~~~~~~~~~~------------~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~  486 (562)
                      ++++..+...|.            ++||+|||+|++|++|.+++.||.+|+|+.+|.+++|.+||+++.++|.|.+++|+
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~  448 (515)
T TIGR03098       369 WNDPEKTAERFRPLPPRPGELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAF  448 (515)
T ss_pred             cCCchhhhhhhhccCCccccccccccceeccceEEEcCCceEEEEeccccceecCCEEeCHHHHHHHHhcCCCeeEEEEE
Confidence            999988877663            24899999999999999999999999999999999999999999999999999999


Q ss_pred             eeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhh
Q 008535          487 GKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRG  551 (562)
Q Consensus       487 ~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~  551 (562)
                      +.+++..++.++++++..+....+.++++++++++++++++|..+++++ ||+|++||++|++|++
T Consensus       449 ~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~iP~t~~GK~~r~~L~~  514 (515)
T TIGR03098       449 GVPDPTLGQAIVLVVTPPGGEELDRAALLAECRARLPNYMVPALIHVRQALPRNANGKIDRKALAA  514 (515)
T ss_pred             eccCcccCceEEEEEEeCCCCCCCHHHHHHHHHhhCccccCCCEEEEeccCCCCCCCCCcHHHhcc
Confidence            9999988999999998766666788999999999999999999988655 9999999999999975

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=100.00  E-value=1.3e-64  Score=529.69  Aligned_cols=499  Identities=24%  Similarity=0.360  Sum_probs=407.7

Q ss_pred             CCCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceE
Q 008535           18 VPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVL   97 (562)
Q Consensus        18 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~   97 (562)
                      ...++.++|+++++  |+++|+++.++++||+||.+++.++|+.|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus        23 ~~~~~~~~~~~~a~--p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la~~~~G~v~  100 (536)
T PRK10946         23 QDLPLTDILTRHAA--SDAIAVICGERQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALLKLGVAP  100 (536)
T ss_pred             cCccHHHHHHHhhC--CCCeEEEeCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHHHHHcCeEE
Confidence            34589999999887  9999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             EecCCCCCHHHHHHHHhhCCceEEEEeccch-----HHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCC
Q 008535           98 SALNTRLDSATLASILRQLEAKIIFVDYQFV-----EVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPS  172 (562)
Q Consensus        98 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (562)
                      +++.+.....++..+++.+++++++++....     ............      ...++....                .
T Consensus       101 v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~~----------------~  158 (536)
T PRK10946        101 VNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSS------LRVVLLLND----------------D  158 (536)
T ss_pred             ecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCC------ceEEEEecC----------------C
Confidence            8777777788899999999999999986531     111111111110      111211111                0


Q ss_pred             CCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchh
Q 008535          173 GSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNG  252 (562)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g  252 (562)
                      +...+.+++....... ...+..++++++++|||||||.||+|++||+++..........+++..++++++.+|++|.++
T Consensus       159 ~~~~~~~~~~~~~~~~-~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~  237 (536)
T PRK10946        159 GEHSLDDAINHPAEDF-TATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTRYLCALPAAHNYP  237 (536)
T ss_pred             CCccHHHHhhCccccc-ccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCceEEEecCcccccc
Confidence            1123333333322111 112345689999999999999999999999999999888888889999999999999999988


Q ss_pred             hH--HHHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhcc--ccccccccceEEEEEeCCCChHHHH
Q 008535          253 WC--CTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANAS--ASDQNQLQRKVIIVIAGVLPTIEVL  328 (562)
Q Consensus       253 l~--~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~--~~~~~~l~~l~~i~~~g~~l~~~~~  328 (562)
                      +.  ..+.++..|+++++.+.+++..+++++++++++++.++|..++.|+...  ......+++++.+++||+++++++.
T Consensus       238 ~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~l~~~~~  317 (536)
T PRK10946        238 MSSPGALGVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSRAQLASLKLLQVGGARLSETLA  317 (536)
T ss_pred             chhhhHHHHhhcCcEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCccccccceeEEEECCCCCCHHHH
Confidence            76  3677788899998888889999999999999999999999999998763  2233457889999999999999999


Q ss_pred             HHHH-hcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEE
Q 008535          329 EQVA-NFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEV  407 (562)
Q Consensus       329 ~~~~-~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel  407 (562)
                      +.+. .+++++++.||+||+.......  ..         ........+|.|..+...+++.+. ++++++.|  +.|||
T Consensus       318 ~~~~~~~g~~~~~~YG~tE~~~~~~~~--~~---------~~~~~~~~~G~p~~~~~~v~i~d~-~~~~~~~g--~~Gel  383 (536)
T PRK10946        318 RRIPAELGCQLQQVFGMAEGLVNYTRL--DD---------SDERIFTTQGRPMSPDDEVWVADA-DGNPLPQG--EVGRL  383 (536)
T ss_pred             HHHHHhcCCeEEEeecccccceeeecC--CC---------ccccccccCCcccCCCceEEEECC-CCCCCCCC--CccEE
Confidence            9987 5699999999999964332211  00         001112356666633337777775 56777665  78999


Q ss_pred             EEcchhhhhhhcCCchhhHhhhc-cceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEE
Q 008535          408 MFRANTVMLGYFKNPKATEEAFR-NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVV  486 (562)
Q Consensus       408 ~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~  486 (562)
                      +++|+.++.||+++++.+...|. +|||+|||+|++|++|.+++.||.+|+|+++|.+++|.+||+.|.++++|.+++|+
T Consensus       384 ~v~g~~~~~GY~~~~~~t~~~~~~d~~~~TGDl~~~d~~G~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~  463 (536)
T PRK10946        384 MTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALV  463 (536)
T ss_pred             EEecCccchhhcCCcccchhhcccCCceecCceEEECCCCcEEEeccccceeecCCEEEcHHHHHHHHHhCCCcceEEEE
Confidence            99999999999999999988884 89999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhcc-CCCCCCCcEEEee-cccCCCCCcchHHHHhhhhhhhc
Q 008535          487 GKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDE-LPSCMVPRAIFFE-DIPVNSTGKVQKFVLRGKVNATA  557 (562)
Q Consensus       487 ~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~-l~~~~~p~~i~~~-~lP~t~~GKv~r~~l~~~~~~~~  557 (562)
                      +.+++..++.+++++++.++  .+.+++++++++. ++.|++|..+.+. ++|+|++||++|++|++.+...+
T Consensus       464 ~~~~~~~g~~~~a~vv~~~~--~~~~~l~~~~~~~~l~~~~~P~~~~~~~~iP~t~~GKv~r~~L~~~~~~~~  534 (536)
T PRK10946        464 SMEDELMGEKSCAFLVVKEP--LKAVQLRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRA  534 (536)
T ss_pred             cCCCcccCceEEEEEEeCCC--CCHHHHHHHHHhCCccccccCcEEEEeccCCCCCCCcccHHHHHHHHHhhc
Confidence            99999888999999987654  6788999999886 9999999988855 59999999999999999887654

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=100.00  E-value=2.3e-65  Score=546.68  Aligned_cols=514  Identities=21%  Similarity=0.239  Sum_probs=390.7

Q ss_pred             CChHHHHHHHHHHcCCceEEEEC------------C-----------eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Q 008535           20 LTPIDFLERAAHVYGDATSIIYG------------T-----------VRFSWRQTHQICLKLASALAQLKISRGDIVAAM   76 (562)
Q Consensus        20 ~ti~~~l~~~a~~~p~~~a~~~~------------~-----------~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~   76 (562)
                      .|+.++|++.++.+|+++|+...            +           ..+||+||.+++.++|++|.+.|+++||+|+++
T Consensus        58 ~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~lG~~~gd~Vai~  137 (696)
T PLN02387         58 TTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVALGHNKEERVAIF  137 (696)
T ss_pred             CCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence            58999999999999999999431            1           238999999999999999999999999999999


Q ss_pred             cCCcHHHHHHHHHhhhccceEEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCC
Q 008535           77 APNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPEC  156 (562)
Q Consensus        77 ~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (562)
                      ++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+....+......+..      ...++.+++.
T Consensus       138 ~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~~~~~~------l~~ii~~~~~  211 (696)
T PLN02387        138 ADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDISSQLET------VKRVIYMDDE  211 (696)
T ss_pred             cCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHhhccCC------ceEEEEECCC
Confidence            9999999999999999999999999999999999999999999999998766665544332211      3455555432


Q ss_pred             CCCCCCcccccCCCCCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhc-CC
Q 008535          157 DHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRC-DV  235 (562)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~-~~  235 (562)
                      .......  ..........++.++...+........+..++|+++|+|||||||.||||++||+++.++.......+ .+
T Consensus       212 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~  289 (696)
T PLN02387        212 GVDSDSS--LSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKL  289 (696)
T ss_pred             Cchhhhh--hhccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHHhhcCCC
Confidence            2110000  00000111234555554432222122234678999999999999999999999999988877765554 57


Q ss_pred             CCCCeeeeecccccchhhHHHHHhHhhceEEEEeccC------C--HHHHHHHHHhcCeEEEEcchHHHHHHHhcccccc
Q 008535          236 RDMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCIRTV------S--AKIIFDSILIHKVTHLCGQPRILNMIANASASDQ  307 (562)
Q Consensus       236 ~~~~~~l~~~pl~~~~gl~~~~~~~~~g~~~v~~~~~------~--~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~  307 (562)
                      .++|++++.+|++|.+++...+.++..|+++......      +  +..++..+++++||+++++|.+++.|.+......
T Consensus       290 ~~~d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~~~~~~  369 (696)
T PLN02387        290 GKNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVRKKV  369 (696)
T ss_pred             CCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHHHHHHH
Confidence            8899999999999999988766667777766553221      1  2345678999999999999999999875321000


Q ss_pred             ----------------------------------------------ccc-cceEEEEEeCCCChHHHHHHHH-hcCCeee
Q 008535          308 ----------------------------------------------NQL-QRKVIIVIAGVLPTIEVLEQVA-NFGFNIR  339 (562)
Q Consensus       308 ----------------------------------------------~~l-~~l~~i~~~g~~l~~~~~~~~~-~~~~~l~  339 (562)
                                                                    ..+ +++|.+++||+++++++.+.++ .+|++++
T Consensus       370 ~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~~~~~~~~g~~v~  449 (696)
T PLN02387        370 DAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLGAPIG  449 (696)
T ss_pred             hcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHHcCCCee
Confidence                                                          001 5899999999999999988887 4799999


Q ss_pred             ccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCccccc-CCCCceeEEEEcchhhhhhh
Q 008535          340 HAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVP-HDGKTLGEVMFRANTVMLGY  418 (562)
Q Consensus       340 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~-~~~~~~Gel~v~~~~~~~gy  418 (562)
                      +.||+||+++.++.....            ......+|.|.++. .++|++.+++.... ...+..|||+|+||+++.||
T Consensus       450 ~~YG~TEt~~~~~~~~~~------------~~~~gsvG~p~p~~-evkivd~~~~~~~~~~~~~p~GEi~vrGp~v~~GY  516 (696)
T PLN02387        450 QGYGLTETCAGATFSEWD------------DTSVGRVGPPLPCC-YVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGY  516 (696)
T ss_pred             EeechhhcccceeecCcc------------cCCCCccCCCCCce-EEEEeeccccCcccCCCCCCCceEEeccCcccchh
Confidence            999999998665543211            11234678888777 88888743433221 11223599999999999999


Q ss_pred             cCCchhhHhhhc---cc--eeeeCceeEEcCCCcEEEeccccceeec-CCeEechHHHHHHHhcCCCceeEEEEeeeCCC
Q 008535          419 FKNPKATEEAFR---NG--WYHTGDLAVRNPDGYVQMKDRRKDIIIS-GAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQ  492 (562)
Q Consensus       419 ~~~~~~~~~~~~---~g--~~~TGD~~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~  492 (562)
                      |++|+.|.+.|.   +|  ||+|||+|++|+||++++.||.+|+||. +|++|+|.+||++|.++|.|.+++|++.+.. 
T Consensus       517 ~~~pe~T~~~f~~d~~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~~~p~V~~~~V~g~~~~-  595 (696)
T PLN02387        517 FKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHADPFH-  595 (696)
T ss_pred             cCCHHHHhhhhccccCCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHhcCCCeeEEEEEecCCc-
Confidence            999999999983   35  9999999999999999999999999996 6999999999999999999999999986532 


Q ss_pred             CCceeEEEEEeCCCC--------C---CC----------HHHHHHHH-----hccCCCCCCCcEEEeeccc-------CC
Q 008535          493 LKEVPVAFVKLKEGR--------E---AS----------PEELVTFC-----GDELPSCMVPRAIFFEDIP-------VN  539 (562)
Q Consensus       493 ~~~~~v~~v~~~~~~--------~---~~----------~~~l~~~~-----~~~l~~~~~p~~i~~~~lP-------~t  539 (562)
                        ..++++|++++..        .   .+          .+++.+.+     +.+|..+.+|+.+.+.+-|       +|
T Consensus       596 --~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~~~~i~l~~~~~t~~~g~lT  673 (696)
T PLN02387        596 --SYCVALVVPSQQALEKWAKKAGIDYSNFAELCEKEEAVKEVQQSLSKAAKAARLEKFEIPAKIKLLPEPWTPESGLVT  673 (696)
T ss_pred             --ceEEEEEEeCHHHHHHHHHHcCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEECCCCCCCCCcCC
Confidence              3478888875421        0   01          11222222     3468999999999876622       78


Q ss_pred             CCCcchHHHHhhhhhhhc
Q 008535          540 STGKVQKFVLRGKVNATA  557 (562)
Q Consensus       540 ~~GKv~r~~l~~~~~~~~  557 (562)
                      ++.|+.|..+++.|.+.-
T Consensus       674 ~t~K~~R~~i~~~y~~~i  691 (696)
T PLN02387        674 AALKLKREQIRKKFKDDL  691 (696)
T ss_pred             hhhhhhhHHHHHHHHHHH
Confidence            999999999999998764

>PRK06178 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.2e-64  Score=531.08  Aligned_cols=524  Identities=23%  Similarity=0.280  Sum_probs=416.1

Q ss_pred             CCCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceE
Q 008535           18 VPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVL   97 (562)
Q Consensus        18 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~   97 (562)
                      ...++.++|+++++.+|+++|+.+.++.+||.||.+++.++|..|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus        31 ~~~~l~~~l~~~a~~~p~~~al~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  110 (567)
T PRK06178         31 GERPLTEYLRAWARERPQRPAIIFYGHVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVH  110 (567)
T ss_pred             CcccHHHHHHHHHHHCCCceEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHHHHHHHHHHhCeEE
Confidence            34689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCC-cccccCCC---CCC
Q 008535           98 SALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPS-TCSVANNF---PSG  173 (562)
Q Consensus        98 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~  173 (562)
                      +|++|..+.+++.++++.++++++++++...+.+........       ...++........... ........   ...
T Consensus       111 v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (567)
T PRK06178        111 VPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAETS-------LRHVIVTSLADVLPAEPTLPLPDSLRAPRLA  183 (567)
T ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccCC-------cceEEEecccccccccccccccccccccccc
Confidence            999999999999999999999999999887776655433221       1122211111100000 00000000   000


Q ss_pred             CCchhhhhhcccC--ccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHh-hcCCCCCCeeeeecccccc
Q 008535          174 SLDYNDLLEMGKA--DFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQIS-RCDVRDMPVFLWTLDMFRC  250 (562)
Q Consensus       174 ~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~-~~~~~~~~~~l~~~pl~~~  250 (562)
                      ...+.++.+....  ......+..++++++++|||||||.||+|.+||+++......... .......+++++.+|++|.
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~  263 (567)
T PRK06178        184 AAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFLSFLPEFWI  263 (567)
T ss_pred             ccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccCCCCcEEEEecchHHH
Confidence            0111122211110  111112345689999999999999999999999998876555433 3567889999999999999


Q ss_pred             hhhH-HHHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEe--CCCChHHH
Q 008535          251 NGWC-CTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIA--GVLPTIEV  327 (562)
Q Consensus       251 ~gl~-~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~--g~~l~~~~  327 (562)
                      +|+. .++.++..|+++++.+.+++..++..+++++++.+..+|..+..+..........+++++.+..+  ++.++++.
T Consensus       264 ~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~  343 (567)
T PRK06178        264 AGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPRFAEYDLSSLRQVRVVSFVKKLNPDY  343 (567)
T ss_pred             HHHHHHHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCCCCCCcchheeeeeccccccCCHHH
Confidence            9985 56777889999999888999999999999999999999999999887654444566778876544  58899999


Q ss_pred             HHHHHh-cCCeee-ccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCcee
Q 008535          328 LEQVAN-FGFNIR-HAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLG  405 (562)
Q Consensus       328 ~~~~~~-~~~~l~-~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~G  405 (562)
                      .+.+++ ++..++ +.||+||+++.+.........+     ......+..+|.|.++. .+++.+.+++..++.+  +.|
T Consensus       344 ~~~~~~~~g~~~~~~~YG~tE~~~~~~~~~~~~~~~-----~~~~~~~~~vG~p~~g~-~v~v~d~~~~~~~~~g--~~G  415 (567)
T PRK06178        344 RQRWRALTGSVLAEAAWGMTETHTCDTFTAGFQDDD-----FDLLSQPVFVGLPVPGT-EFKICDFETGELLPLG--AEG  415 (567)
T ss_pred             HHHHHHHhCCcccccccccccccccceeccccccCc-----cccccCCcccccccCCc-EEEEEcCCCCCcCCCC--Cce
Confidence            999884 576666 4799999876544332111100     00012234578888877 8888887678888766  679


Q ss_pred             EEEEcchhhhhhhcCCchhhHhhhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEE
Q 008535          406 EVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAV  485 (562)
Q Consensus       406 el~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v  485 (562)
                      ||+++|++++.||+++++.+...|.+|||+|||+|+++++|++++.||.+|+|+.+|.+++|.+||+.+.++++|.++++
T Consensus       416 el~v~g~~v~~gY~~~~~~~~~~~~dg~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~eiE~~l~~~~~v~~~~v  495 (567)
T PRK06178        416 EIVVRTPSLLKGYWNKPEATAEALRDGWLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAV  495 (567)
T ss_pred             EEEEECCcccccccCChhhhhhcccCCceeecceEEEecCCeEEEEecccccEEECCEEECHHHHHHHHHhCCCeeEEEE
Confidence            99999999999999999999888999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeecccCCCCCcchHHHHhhhhhhh
Q 008535          486 VGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFEDIPVNSTGKVQKFVLRGKVNAT  556 (562)
Q Consensus       486 ~~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~lP~t~~GKv~r~~l~~~~~~~  556 (562)
                      ++.+++..++.++++|++.++...+.+++.++++++++.+++|..+++.++|+|++||++|++|++++++.
T Consensus       496 ~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~i~~v~~iP~t~~GKv~r~~l~~~~~~~  566 (567)
T PRK06178        496 VGRPDPDKGQVPVAFVQLKPGADLTAAALQAWCRENMAVYKVPEIRIVDALPMTATGKVRKQDLQALAEEL  566 (567)
T ss_pred             EcCcCcccCcceEEEEEeCCCCcCCHHHHHHHHHhcCcccCCceEEEeccCCCCCccceeHHHHHHHHHhh
Confidence            99988888889999999887666788999999999999999997444556999999999999999998764

>PRK09088 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.2e-64  Score=525.29  Aligned_cols=477  Identities=25%  Similarity=0.329  Sum_probs=395.7

Q ss_pred             HHHHHHcCCceEEEE--CCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEEecCCCC
Q 008535           27 ERAAHVYGDATSIIY--GTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRL  104 (562)
Q Consensus        27 ~~~a~~~p~~~a~~~--~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~  104 (562)
                      +.+++.+|+++|+.+  .+..+||+||.+.+.++|..|.+.|+++||+|+++++|+++++++++||+++|++++|+++..
T Consensus         2 ~~~a~~~p~~~a~~~~~~~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~~~~~~   81 (488)
T PRK09088          2 AFHARLQPQRLAAVDLALGRRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRL   81 (488)
T ss_pred             chhhhhCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEeeCccC
Confidence            456788999999987  578999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCchhhhhhcc
Q 008535          105 DSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMG  184 (562)
Q Consensus       105 ~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (562)
                      +.+++..+++.++++++++++.....                ....+                        .+..+....
T Consensus        82 ~~~~~~~~~~~~~~~~ii~~~~~~~~----------------~~~~~------------------------~~~~~~~~~  121 (488)
T PRK09088         82 SASELDALLQDAEPRLLLGDDAVAAG----------------RTDVE------------------------DLAAFIASA  121 (488)
T ss_pred             CHHHHHHHHHhCCCCEEEEcchhhcc----------------ccccc------------------------chhhhhhhc
Confidence            99999999999999999998653220                00000                        000010000


Q ss_pred             cCc-cccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHHH-HHhHhh
Q 008535          185 KAD-FEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCT-WAMAAV  262 (562)
Q Consensus       185 ~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~~-~~~~~~  262 (562)
                      ... .........+++++++|||||||.||+|.++|+++............+...|++++.+|++|.+++... ..++..
T Consensus       122 ~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~  201 (488)
T PRK09088        122 DALEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAV  201 (488)
T ss_pred             cccccccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEecchHHHHHHHHHHHHHHhc
Confidence            000 000112345789999999999999999999999998877777777778899999999999999998764 455666


Q ss_pred             ceEEEEeccCCHHHHHHHHH--hcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHHhcCCeeec
Q 008535          263 GGINVCIRTVSAKIIFDSIL--IHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVANFGFNIRH  340 (562)
Q Consensus       263 g~~~v~~~~~~~~~~~~~i~--~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~~~~~~l~~  340 (562)
                      |+++++.+.+++..++..+.  ++++|+++++|.+++.+.+........+++++.+++||++++.+..+.+.+.++++++
T Consensus       202 g~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~g~~v~~  281 (488)
T PRK09088        202 GGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPGFDAAALRHLTALFTGGAPHAAEDILGWLDDGIPMVD  281 (488)
T ss_pred             CCEEEEcCCCCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcCcCccccccceEEEecCCCCCHHHHHHHHHhCCceee
Confidence            77777777788999998886  4899999999999999987665555667899999999999999888887766899999


Q ss_pred             cccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhhhhhhcC
Q 008535          341 AYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFK  420 (562)
Q Consensus       341 ~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~  420 (562)
                      .||+||++++......+.         ........+|.+.++. .++|.+. ++.+++.+  +.|||+++|++++.||++
T Consensus       282 ~YG~TE~~~~~~~~~~~~---------~~~~~~~~vG~~~~~~-~~~i~d~-~~~~~~~g--~~Gel~v~~~~~~~gY~~  348 (488)
T PRK09088        282 GFGMSEAGTVFGMSVDCD---------VIRAKAGAAGIPTPTV-QTRVVDD-QGNDCPAG--VPGELLLRGPNLSPGYWR  348 (488)
T ss_pred             eecccccccccccCCCcc---------cccccCCccccCCCCc-EEEEECC-CCCCCcCC--CceEEEEECCccchhhcC
Confidence            999999986543221110         0011224567777777 7888875 56666655  679999999999999999


Q ss_pred             CchhhHhhhc-cceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCCCCCceeEE
Q 008535          421 NPKATEEAFR-NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVA  499 (562)
Q Consensus       421 ~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~  499 (562)
                      +++.+.+.|. +|||+|||+|++|++|.+++.||.+|+|+.+|.+++|.+||++|..++.|.+++|++.+++..++..++
T Consensus       349 ~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~  428 (488)
T PRK09088        349 RPQATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYL  428 (488)
T ss_pred             ChhhhhhhhcCCCCeeecceEEEcCCCcEEEeccccceEEeCCEEECHHHHHHHHHhCCCcceEEEEeCCCccCCceeEE
Confidence            9998888774 899999999999999999999999999999999999999999999999999999999998877888889


Q ss_pred             EEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhh
Q 008535          500 FVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNAT  556 (562)
Q Consensus       500 ~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~  556 (562)
                      ++++.+....+.+++.++++++++++++|..+.+++ ||+|++||++|++|++++.+.
T Consensus       429 ~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~iP~t~~gKi~r~~l~~~~~~~  486 (488)
T PRK09088        429 AIVPADGAPLDLERIRSHLSTRLAKYKVPKHLRLVDALPRTASGKLQKARLRDALAAG  486 (488)
T ss_pred             EEEECCCCCCCHHHHHHHHHhhCcCCCCCCEEEEcccCCCCCCCceeHHHHHHHHHhc
Confidence            998877666678899999999999999999888655 999999999999999988764

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.8e-64  Score=532.58  Aligned_cols=518  Identities=25%  Similarity=0.328  Sum_probs=412.1

Q ss_pred             CChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEEe
Q 008535           20 LTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSA   99 (562)
Q Consensus        20 ~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~   99 (562)
                      .++.+++.+.++.+|+++|+++.++++||+||++++.++|+.|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus        24 ~~~~~~~~~~a~~~p~~~a~~~~~~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vp  103 (563)
T PRK06710         24 QPLHKYVEQMASRYPEKKALHFLGKDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQ  103 (563)
T ss_pred             ccHHHHHHHHHHHCCCceEEEecCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHcCeEEec
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCC-CCCCcccc-------cCC--
Q 008535          100 LNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDH-YQPSTCSV-------ANN--  169 (562)
Q Consensus       100 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------~~~--  169 (562)
                      ++|..+.+++.++++.+++++++++......+........       ...++....... ..+.....       .+.  
T Consensus       104 i~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (563)
T PRK06710        104 TNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSATK-------IEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVV  176 (563)
T ss_pred             cCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchhhc-------cceeEEeccccccccccccccchhhcccccccc
Confidence            9999999999999999999999998865443332211100       111111100000 00000000       000  


Q ss_pred             --CCCC-CCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHh-hcCCC-CCCeeeee
Q 008535          170 --FPSG-SLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQIS-RCDVR-DMPVFLWT  244 (562)
Q Consensus       170 --~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~-~~~~~-~~~~~l~~  244 (562)
                        .... ...+..+....... ........+++++++|||||||.||+|.++|+++..+...... .+... ..++++++
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~  255 (563)
T PRK06710        177 KVSESETIHLWNSVEKEVNTG-VEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLGV  255 (563)
T ss_pred             cccccchhhhhhhhhhccccc-cccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCCCCceEEEe
Confidence              0000 00111111111100 0011123478999999999999999999999998755443332 23333 34578999


Q ss_pred             cccccchhhHH-HHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCC
Q 008535          245 LDMFRCNGWCC-TWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLP  323 (562)
Q Consensus       245 ~pl~~~~gl~~-~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l  323 (562)
                      .|++|.+++.. .+.++..|+++++.+.+++..+++.++++++|++.++|+++..++.........++++|.+++||+++
T Consensus       256 ~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~v~~gg~~~  335 (563)
T PRK06710        256 LPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIRACISGSAPL  335 (563)
T ss_pred             CchHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCccccCChhhhhheeeCCCcC
Confidence            99999998764 44567788888888888999999999999999999999999999886655555678999999999999


Q ss_pred             hHHHHHHHH-hcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCC
Q 008535          324 TIEVLEQVA-NFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGK  402 (562)
Q Consensus       324 ~~~~~~~~~-~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~  402 (562)
                      +++..++++ .++.++++.||+||+++.+......           ........|.+.++. .+++++.+++..++.+  
T Consensus       336 ~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~-----------~~~~~~~~G~~~~~~-~~~i~~~~~~~~~~~g--  401 (563)
T PRK06710        336 PVEVQEKFETVTGGKLVEGYGLTESSPVTHSNFLW-----------EKRVPGSIGVPWPDT-EAMIMSLETGEALPPG--  401 (563)
T ss_pred             CHHHHHHHHHhhCCCEecccccccCccccccCccc-----------ccccCCccCCCCCCC-eEEEEECCCCccCCCC--
Confidence            999999988 4688999999999998754432110           011123567777776 7888887778877776  


Q ss_pred             ceeEEEEcchhhhhhhcCCchhhHhhhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCcee
Q 008535          403 TLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLE  482 (562)
Q Consensus       403 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~  482 (562)
                      +.|||+++|+.++.||+++++.+...|.+|||+|||+++++++|.+++.||.||+|+++|.+|+|.+||+.|.+++.|.+
T Consensus       402 ~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~p~eiE~~l~~~~~v~~  481 (563)
T PRK06710        402 EIGEIVVKGPQIMKGYWNKPEETAAVLQDGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEKVQE  481 (563)
T ss_pred             CceEEEEecCccchhhhCChHHHhhhcccCcccccceEEEcCCCcEEEeeccccEEEECCEEECHHHHHHHHHhCcceee
Confidence            67999999999999999999999998999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhhccc
Q 008535          483 AAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNATAVG  559 (562)
Q Consensus       483 ~~v~~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~~~~  559 (562)
                      ++|++.+++..++.++++++..++...+.++++++++++++.+++|..+.+++ ||+|++||++|+.|++.+..+-++
T Consensus       482 ~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~GKi~r~~L~~~~~~~~~~  559 (563)
T PRK06710        482 VVTIGVPDPYRGETVKAFVVLKEGTECSEEELNQFARKYLAAYKVPKVYEFRDELPKTTVGKILRRVLIEEEKRKNED  559 (563)
T ss_pred             EEEEccccCCcCceeEEEEEECCCCCCCHHHHHHHHHHhcccccCCcEEEEcccCCCCccchhhHHHHHHHHhhcCcc
Confidence            99999999888899999999887766778899999999999999999888665 999999999999999998876654

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=5e-65  Score=540.32  Aligned_cols=505  Identities=21%  Similarity=0.265  Sum_probs=394.1

Q ss_pred             CCCChHHHHHHHHHHcCCceEEEECC---------eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Q 008535           18 VPLTPIDFLERAAHVYGDATSIIYGT---------VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHF   88 (562)
Q Consensus        18 ~~~ti~~~l~~~a~~~p~~~a~~~~~---------~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~l   88 (562)
                      +.+|+.++++++++.+|+++|+++.+         ..+||+||.+++.++|++|.+. +++||+|+++++|+++++++++
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~~~l  110 (612)
T PRK12476         32 PGTTLISLIERNIANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYVAGFF  110 (612)
T ss_pred             ccCcHHHHHHHHHHhCCCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHHHHHH
Confidence            34689999999999999999998631         4799999999999999999986 9999999999999999999999


Q ss_pred             HhhhccceEEec-CCCCC--HHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCccc
Q 008535           89 AVPMAGAVLSAL-NTRLD--SATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCS  165 (562)
Q Consensus        89 A~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (562)
                      ||+++|++++|+ ++.++  .+++.++++.+++++++++....+.+......+....    ...++.+++...       
T Consensus       111 A~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~-------  179 (612)
T PRK12476        111 AAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLR----RPRVIAIDAIPD-------  179 (612)
T ss_pred             HHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhccccc----CceEEEeccccc-------
Confidence            999999999999 57766  7899999999999999999876665544332221000    122222221000       


Q ss_pred             ccCCCCCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcC-CCCCCeeeee
Q 008535          166 VANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCD-VRDMPVFLWT  244 (562)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~-~~~~~~~l~~  244 (562)
                                       ...... ...+..++++++|+|||||||.||||.++|+++..+.......++ +.+++++++.
T Consensus       180 -----------------~~~~~~-~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~  241 (612)
T PRK12476        180 -----------------SAGESF-VPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSW  241 (612)
T ss_pred             -----------------cccccc-cCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhccCCCCceEEEe
Confidence                             000000 011235679999999999999999999999999887776666677 7888999999


Q ss_pred             cccccchhhHHHHHhHhhceEEEEecc--C--CHHHHHHHHH--hcCeEEEEcchHHHHHHHhccc----cccccccceE
Q 008535          245 LDMFRCNGWCCTWAMAAVGGINVCIRT--V--SAKIIFDSIL--IHKVTHLCGQPRILNMIANASA----SDQNQLQRKV  314 (562)
Q Consensus       245 ~pl~~~~gl~~~~~~~~~g~~~v~~~~--~--~~~~~~~~i~--~~~~t~l~~~p~~~~~l~~~~~----~~~~~l~~l~  314 (562)
                      +|++|.+|+...+.+++.|++.++..+  +  ++..+++.++  +++++.++.+|.++..++....    ....+++++|
T Consensus       242 ~Pl~h~~g~~~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~lr  321 (612)
T PRK12476        242 LPLYHDMGLSMIGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPAEGDDIDLSNVV  321 (612)
T ss_pred             CCcccccchHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChhhhcCcchhHhe
Confidence            999999999877777777877777653  3  8899999995  5899999999999888766421    1234678899


Q ss_pred             EEEEeCCCChHHHHHHHHh-c---CC---eeeccccCccccCcccccccCCCC-----CC--------CcCCcc--cccc
Q 008535          315 IIVIAGVLPTIEVLEQVAN-F---GF---NIRHAYGMTEVLGPAIVRQWKPEG-----ES--------SALDHE--HEMT  372 (562)
Q Consensus       315 ~i~~~g~~l~~~~~~~~~~-~---~~---~l~~~YG~tE~~~~~~~~~~~~~~-----~~--------~~~~~~--~~~~  372 (562)
                       +++||++++++..+.|.+ +   |+   ++++.||+||++..++........     +.        ..+...  ....
T Consensus       322 -~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  400 (612)
T PRK12476        322 -LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVA  400 (612)
T ss_pred             -EEecccCCCHHHHHHHHHHHHhcCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcce
Confidence             999999999999988874 3   43   489999999987554332111000     00        000000  0011


Q ss_pred             ccccCccccccccceecccCCcccccCCCCceeEEEEcchhhhhhhcCCchhhHhhhc-------------------cce
Q 008535          373 KHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFR-------------------NGW  433 (562)
Q Consensus       373 ~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-------------------~g~  433 (562)
                      ...+|.+.++. .++|++.+++.+++.+  +.|||+++|++++.||+++++.+.+.|.                   ++|
T Consensus       401 ~~~~G~~~~g~-~v~ivd~~~g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w  477 (612)
T PRK12476        401 HVSCGQVARSQ-WAVIVDPDTGAELPDG--EVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTW  477 (612)
T ss_pred             eEeCCCcCCCC-EEEEEeCCCCcCCCCC--CEEEEEEcCCcccccccCChHHHHHHHhhhhccccccccccccccCCCCe
Confidence            23678888887 8888887658888766  7899999999999999999999998884                   259


Q ss_pred             eeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhc-CCCcee--EEEEeeeCCCCCceeEEEEEeCCCCC-C
Q 008535          434 YHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLS-NPKVLE--AAVVGKVDDQLKEVPVAFVKLKEGRE-A  509 (562)
Q Consensus       434 ~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~-~~~v~~--~~v~~~~~~~~~~~~v~~v~~~~~~~-~  509 (562)
                      |+|||+|+++ ||+++|.||.||+||++|++|+|.+||++|.+ +|.|.+  ++|++++++. ++.+++++++.++.. .
T Consensus       478 ~~TGDlg~~~-dG~l~i~GR~~d~I~~~G~~I~p~eIE~~l~~~~p~V~~~~v~v~~~~~~~-~~~~~~~v~~~~~~~~~  555 (612)
T PRK12476        478 LRTGDLGVYL-DGELYITGRIADLIVIDGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAED-NERLVIVAERAAGTSRA  555 (612)
T ss_pred             eeccccceeE-CCEEEEEeccCcEEEECCcccCHHHHHHHHHHhcccccCCcEEEEEecCCC-cceEEEEEEecCCcccc
Confidence            9999999985 99999999999999999999999999999985 799999  7778888776 788999999877643 4


Q ss_pred             CHHHHHHHHhccCC-CCCC-CcEEEeec---ccCCCCCcchHHHHhhhhhhhcc
Q 008535          510 SPEELVTFCGDELP-SCMV-PRAIFFED---IPVNSTGKVQKFVLRGKVNATAV  558 (562)
Q Consensus       510 ~~~~l~~~~~~~l~-~~~~-p~~i~~~~---lP~t~~GKv~r~~l~~~~~~~~~  558 (562)
                      +.+++.+++++++. .+++ |+.+.+++   ||+|++||++|++|+++|.+...
T Consensus       556 ~~~~l~~~~~~~l~~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~L~~~~~~~~~  609 (612)
T PRK12476        556 DPAPAIDAIRAAVSRRHGLAVADVRLVPAGAIPRTTSGKLARRACRAQYLDGRL  609 (612)
T ss_pred             cHHHHHHHHHHHHHHhhCCcceEEEEECCCCcCcCCchHHHHHHHHHHHHcCCC
Confidence            66788888888877 4777 57776654   99999999999999999877653

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.5e-64  Score=534.92  Aligned_cols=505  Identities=22%  Similarity=0.236  Sum_probs=394.2

Q ss_pred             cCCCCCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhcc
Q 008535           15 ANNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAG   94 (562)
Q Consensus        15 ~~~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G   94 (562)
                      .+..+.|+.++|.+.++.+|+++|+++.++.+||+||.+++.++|.+|.+.|+++||+|+++++|+++++++++||+++|
T Consensus        32 ~~~~~~tl~~~l~~~a~~~p~~~Ai~~~~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~lA~~~~G  111 (600)
T PRK08279         32 TPDSKRSLGDVFEEAAARHPDRPALLFEDQSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLG  111 (600)
T ss_pred             CCCCcccHHHHHHHHHHhCCCCcEEEeCCCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcC
Confidence            34567799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCC
Q 008535           95 AVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGS  174 (562)
Q Consensus        95 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (562)
                      ++++++++.++.+++.++++.++++++|++.+..+.+.........      ...++..+.....             ..
T Consensus       112 ~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-------------~~  172 (600)
T PRK08279        112 AVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLAR------PPRLWVAGGDTLD-------------DP  172 (600)
T ss_pred             cEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhhcc------cceEEEecCcccc-------------cc
Confidence            9999999999999999999999999999998877766554332221      1111111111000             00


Q ss_pred             Cchhhhhh---cccCc-cccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccc
Q 008535          175 LDYNDLLE---MGKAD-FEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRC  250 (562)
Q Consensus       175 ~~~~~~~~---~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~  250 (562)
                      ..+.++..   ..+.. .........+++++|+|||||||.||||.+||+++..+.......+++.++|++++.+|++|.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~pl~h~  252 (600)
T PRK08279        173 EGYEDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHN  252 (600)
T ss_pred             ccHHHHhhhcccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcCCCCCcEEEEecCchhh
Confidence            11222221   11110 111122356899999999999999999999999999998888888999999999999999999


Q ss_pred             hhhHHHHHh-HhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHH
Q 008535          251 NGWCCTWAM-AAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLE  329 (562)
Q Consensus       251 ~gl~~~~~~-~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~  329 (562)
                      +++...+.+ +..|+++++.+.+++..+++.++++++|++..+|.+++.++...........+++.+  +|+.++++..+
T Consensus       253 ~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~~~~~~l~~~--~g~~l~~~~~~  330 (600)
T PRK08279        253 TGGTVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPTDRDHRLRLM--IGNGLRPDIWD  330 (600)
T ss_pred             hhHHHHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCccccCcceeEE--ecCCCCHHHHH
Confidence            998865554 556777777778899999999999999999999999999987654443445567654  47778999998


Q ss_pred             HHH-hcCC-eeeccccCccccCcccccccCCCCCCCcCCccccccccccCcccc----ccc--------cceecccCCcc
Q 008535          330 QVA-NFGF-NIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNL----LIQ--------GVDVKQQNTMK  395 (562)
Q Consensus       330 ~~~-~~~~-~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~--------~~~i~~~~~~~  395 (562)
                      .|. .++. .+++.||+||++..+.... .              ....+|.+..    +..        +..+.+. ++.
T Consensus       331 ~~~~~~~~~~l~~~YG~tE~~~~~~~~~-~--------------~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~  394 (600)
T PRK08279        331 EFQQRFGIPRILEFYAASEGNVGFINVF-N--------------FDGTVGRVPLWLAHPYAIVKYDVDTGEPVRDA-DGR  394 (600)
T ss_pred             HHHHHhCcceeeeeecccccceeecccC-C--------------CCcccccccccccccceeeeeccCcCceeeCC-CCc
Confidence            887 4565 5999999999875332210 0              0112222222    110        2222222 222


Q ss_pred             cccCCCCceeEEE--EcchhhhhhhcCCchhhHhhh-------ccceeeeCceeEEcCCCcEEEeccccceeecCCeEec
Q 008535          396 SVPHDGKTLGEVM--FRANTVMLGYFKNPKATEEAF-------RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIIS  466 (562)
Q Consensus       396 ~~~~~~~~~Gel~--v~~~~~~~gy~~~~~~~~~~~-------~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~  466 (562)
                      ......++.|||+  +.++.++.|| +++..+...|       .++||+|||+|++|+||.+++.||.||+||++|.+|+
T Consensus       395 ~~~~~~g~~Gel~~~i~~~~~~~GY-~~~~~t~~~~~~~~~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~~G~~i~  473 (600)
T PRK08279        395 CIKVKPGEVGLLIGRITDRGPFDGY-TDPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVA  473 (600)
T ss_pred             cccCCCCCceeEEEEecCccccccc-CCchhhHHHHhhcccCCCCceEeecceEEEcCCccEEEecccCCeEEECCcccC
Confidence            2223334779998  7899999999 8888887765       2579999999999999999999999999999999999


Q ss_pred             hHHHHHHHhcCCCceeEEEEeeeCCCC-CceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcc
Q 008535          467 SLEVEAVLLSNPKVLEAAVVGKVDDQL-KEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKV  544 (562)
Q Consensus       467 ~~~iE~~l~~~~~v~~~~v~~~~~~~~-~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv  544 (562)
                      |.+||+.+.++|+|.+++|++++.+.. +...+++++..++...+.++++++++++++.|++|..+++.+ ||+|++||+
T Consensus       474 p~eIE~~l~~~p~V~~a~v~gv~~~~~~~~~~~~~vv~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi  553 (600)
T PRK08279        474 TTEVENALSGFPGVEEAVVYGVEVPGTDGRAGMAAIVLADGAEFDLAALAAHLYERLPAYAVPLFVRLVPELETTGTFKY  553 (600)
T ss_pred             HHHHHHHHhcCCCcceEEEEEeecCCCCCccceeEEEecCCccCCHHHHHHHHHhhCccccCCeEEEeecCCCCCcchhh
Confidence            999999999999999999999886643 444556666665556788999999999999999999988655 999999999


Q ss_pred             hHHHHhhhhhhhc
Q 008535          545 QKFVLRGKVNATA  557 (562)
Q Consensus       545 ~r~~l~~~~~~~~  557 (562)
                      +|++|++.+.+.+
T Consensus       554 ~r~~L~~~~~~~~  566 (600)
T PRK08279        554 RKVDLRKEGFDPS  566 (600)
T ss_pred             hHHHHhhcCCCcc
Confidence            9999998887764

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=100.00  E-value=5.7e-65  Score=548.40  Aligned_cols=492  Identities=21%  Similarity=0.251  Sum_probs=390.5

Q ss_pred             CCCChHHHHHHHHHHcCC-ceEEEECC-eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccc
Q 008535           18 VPLTPIDFLERAAHVYGD-ATSIIYGT-VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGA   95 (562)
Q Consensus        18 ~~~ti~~~l~~~a~~~p~-~~a~~~~~-~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~   95 (562)
                      +..|+.++|+++++.+|+ ++|+.+.+ +++||+||.++++++|++|.+. +++||+|+++++|++++++++|||+++|+
T Consensus       202 ~~~t~~~~l~~~~~~~p~~~~a~~~~~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~lA~~~~G~  280 (718)
T PRK08043        202 PRETLYEALLSAQYRYGAGKPCIEDVNFTPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVIFGASLRRR  280 (718)
T ss_pred             CCCCHHHHHHHHHHHhCCCCcceEcCCCCcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHHHHHHHcCC
Confidence            456899999999999998 57877643 7899999999999999999987 59999999999999999999999999999


Q ss_pred             eEEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHH--HHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCC
Q 008535           96 VLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQN--ALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSG  173 (562)
Q Consensus        96 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (562)
                      +++|+++.++.+++.++++++++++++++.+..+....  ....+.       ...++.+++...               
T Consensus       281 v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~---------------  338 (718)
T PRK08043        281 IPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLT-------QVRWVYLEDLKD---------------  338 (718)
T ss_pred             cccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhc-------cccEEEhhhhhh---------------
Confidence            99999999999999999999999999998765432110  000000       011121111000               


Q ss_pred             CCchhh--hh-hcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccc
Q 008535          174 SLDYND--LL-EMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRC  250 (562)
Q Consensus       174 ~~~~~~--~~-~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~  250 (562)
                      ...+.+  .. ...........+..++|+++++|||||||.||||.+||+++..........+++.++|++++.+|++|.
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~  418 (718)
T PRK08043        339 DVTTADKLWIFAHLLMPRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHS  418 (718)
T ss_pred             hcchhHHHHHHHHHhCCccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhCCCccCeEEEcCcchhh
Confidence            000100  00 000000011122456899999999999999999999999999888877778889999999999999999


Q ss_pred             hhhHH-HHHhHhhceEEEEecc-CCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHH
Q 008535          251 NGWCC-TWAMAAVGGINVCIRT-VSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVL  328 (562)
Q Consensus       251 ~gl~~-~~~~~~~g~~~v~~~~-~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~  328 (562)
                      +++.. ++.++..|+++++.+. +++..+++.+.++++|+++++|+++..+.+..  ...+++++|.+++||++++++..
T Consensus       419 ~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~--~~~~~~~lr~i~~gg~~l~~~~~  496 (718)
T PRK08043        419 FGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA--NPYDFARLRYVVAGAEKLQESTK  496 (718)
T ss_pred             hhhHHHHHHHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc--CcccccceEEEEEeCccCCHHHH
Confidence            99864 6677888999887764 57788899999999999999999999886642  23457899999999999999999


Q ss_pred             HHHH-hcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEE
Q 008535          329 EQVA-NFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEV  407 (562)
Q Consensus       329 ~~~~-~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel  407 (562)
                      +.|+ .+++++++.||+||+++.++....            .......+|.|.++. .+++++.+ +.      ++.|||
T Consensus       497 ~~~~~~~g~~l~~~YG~TE~~~~~~~~~~------------~~~~~~svG~p~pg~-~~~i~d~~-~~------~~~Gel  556 (718)
T PRK08043        497 QLWQDKFGLRILEGYGVTECAPVVSINVP------------MAAKPGTVGRILPGM-DARLLSVP-GI------EQGGRL  556 (718)
T ss_pred             HHHHHHcCCCeecccCcccccceEEecCC------------cccCCCCCCCcCCCC-eeEEecCC-CC------CCceEE
Confidence            9988 569999999999999766543211            011235678887777 77777653 21      144999


Q ss_pred             EEcchhhhhhhcCC--chh-------hHh-hhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcC
Q 008535          408 MFRANTVMLGYFKN--PKA-------TEE-AFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSN  477 (562)
Q Consensus       408 ~v~~~~~~~gy~~~--~~~-------~~~-~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~  477 (562)
                      +++|++++.||+++  ++.       +.. .+.+|||+|||+|++|+||.+++.||.+|+||++|++|+|.+||+++.++
T Consensus       557 ~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~I~~~G~~V~p~eIE~~l~~~  636 (718)
T PRK08043        557 QLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGV  636 (718)
T ss_pred             EEecCCccccccCCCCcccccccccccccccccCCeEecCCEEEEcCCCcEEEEecCCCeeEeCcEEcCHHHHHHHHHhC
Confidence            99999999999983  332       111 13479999999999999999999999999999999999999999999999


Q ss_pred             CCceeEEEEeeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhcc-CCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhh
Q 008535          478 PKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDE-LPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNA  555 (562)
Q Consensus       478 ~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~-l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~  555 (562)
                      +.+.+++|++.+++..++.+++++.   +...+.++++++++++ ++.|++|+.+.+++ ||+|++||++|++|++++.+
T Consensus       637 ~~~~~~avv~~~~~~~ge~~v~~~~---~~~~~~~~l~~~~~~~~l~~~~vP~~i~~v~~lP~t~~GKi~r~~L~~~~~~  713 (718)
T PRK08043        637 SPDKQHATAIKSDASKGEALVLFTT---DSELTREKLQQYAREHGVPELAVPRDIRYLKQLPLLGSGKPDFVTLKSMVDE  713 (718)
T ss_pred             CccceEEEEEccCCCCCceEEEEEc---CcccCHHHHHHHHHhcCCCcccCCceEEEecccCcCCCCCcCHHHHHHHHhc
Confidence            9888899999988888888887764   3346778999999987 99999999988665 99999999999999998876


Q ss_pred             hc
Q 008535          556 TA  557 (562)
Q Consensus       556 ~~  557 (562)
                      ..
T Consensus       714 ~~  715 (718)
T PRK08043        714 PE  715 (718)
T ss_pred             cc
Confidence            43

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=6.5e-64  Score=527.55  Aligned_cols=509  Identities=23%  Similarity=0.332  Sum_probs=403.6

Q ss_pred             CChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCcHHHHHHHHHhhhccceEE
Q 008535           20 LTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQL-KISRGDIVAAMAPNIPALYKLHFAVPMAGAVLS   98 (562)
Q Consensus        20 ~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~-gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v   98 (562)
                      +++.++|+++++.+|+++|+...+.++||.||.++++++|+.|.+. |+++||+|+++++|+++++++++||+++|++++
T Consensus        24 ~~~~~~l~~~~~~~p~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~la~~~~G~v~v  103 (562)
T PRK12492         24 KSVVEVFERSCKKFADRPAFSNLGVTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALRAGLIVV  103 (562)
T ss_pred             CcHHHHHHHHHHhCCCCeeEecCCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEe
Confidence            5899999999999999999999889999999999999999999984 999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCc---------ccc---
Q 008535           99 ALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPST---------CSV---  166 (562)
Q Consensus        99 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~---  166 (562)
                      ++++.++.+++.++++++++++++++....+.+........       ....+....... .+..         ...   
T Consensus       104 ~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  175 (562)
T PRK12492        104 NTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDTG-------IEYLIEAKMGDL-LPAAKGWLVNTVVDKVKKM  175 (562)
T ss_pred             ccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhccC-------ceEEEeechhhc-cccccchhccccccccccc
Confidence            99999999999999999999999998765554433221100       000000000000 0000         000   


Q ss_pred             -cCCCCCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcC---------CC
Q 008535          167 -ANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCD---------VR  236 (562)
Q Consensus       167 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~---------~~  236 (562)
                       ......+...+.++............+...+++++|+|||||||.||+|.++|+++..+.......+.         +.
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~  255 (562)
T PRK12492        176 VPAYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMK  255 (562)
T ss_pred             ccccCCcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhccccccccccc
Confidence             00000122344444432221111122345679999999999999999999999998777665544432         22


Q ss_pred             C-CCeeeeecccccchhhHH-HHHhHhhceEEEEec-cCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccce
Q 008535          237 D-MPVFLWTLDMFRCNGWCC-TWAMAAVGGINVCIR-TVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRK  313 (562)
Q Consensus       237 ~-~~~~l~~~pl~~~~gl~~-~~~~~~~g~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l  313 (562)
                      . .+++++.+|++|.+++.. .+..+..|+..+... ..++..+++.++++++|++.++|.++..|+........+++++
T Consensus       256 ~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l  335 (562)
T PRK12492        256 EGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFSAL  335 (562)
T ss_pred             CCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCcccccccce
Confidence            2 356788999999999864 444456666665543 5688999999999999999999999999988776556678899


Q ss_pred             EEEEEeCCCChHHHHHHHH-hcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccC
Q 008535          314 VIIVIAGVLPTIEVLEQVA-NFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQN  392 (562)
Q Consensus       314 ~~i~~~g~~l~~~~~~~~~-~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~  392 (562)
                      |.+++||+++++++.+.|+ .+++++++.||+||++++++.+....           ......+|.|.++. .++|++. 
T Consensus       336 r~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~-----------~~~~~~~G~p~~~~-~v~ivd~-  402 (562)
T PRK12492        336 KLTNSGGTALVKATAERWEQLTGCTIVEGYGLTETSPVASTNPYGE-----------LARLGTVGIPVPGT-ALKVIDD-  402 (562)
T ss_pred             eEEEeccccCCHHHHHHHHHHhCCceeeccCccccCceeeecCCcc-----------cccCCccceecCCC-EEEEECC-
Confidence            9999999999999999988 46999999999999987665432111           11124567777776 7888886 


Q ss_pred             CcccccCCCCceeEEEEcchhhhhhhcCCchhhHhhhc-cceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHH
Q 008535          393 TMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFR-NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVE  471 (562)
Q Consensus       393 ~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE  471 (562)
                      ++.+++.+  +.|||+++|+.++.||+++++.+...|. +|||+|||+|+++++|.+++.||.+|+|+++|.+++|.+||
T Consensus       403 ~~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGD~g~~~~~G~l~i~GR~~~~i~~~G~~i~~~eIE  480 (562)
T PRK12492        403 DGNELPLG--ERGELCIKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIE  480 (562)
T ss_pred             CCCCCCCC--CceEEEEeCCccccccccCchhhhhcccCCCceecCcEEEECCCCeEEEecccCCeEEECCEEECHHHHH
Confidence            66777665  6799999999999999999999988884 79999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHh
Q 008535          472 AVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLR  550 (562)
Q Consensus       472 ~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~  550 (562)
                      ..|.+++.|.+++|++.++...++.+++++++.+. ....++++++++++++.+++|..+.+.+ ||+|++||++|++|+
T Consensus       481 ~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~-~~~~~~i~~~~~~~l~~~~~P~~i~~~~~~P~t~~GK~~r~~L~  559 (562)
T PRK12492        481 DVVMAHPKVANCAAIGVPDERSGEAVKLFVVARDP-GLSVEELKAYCKENFTGYKVPKHIVLRDSLPMTPVGKILRRELR  559 (562)
T ss_pred             HHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCC-CCCHHHHHHHHHHhcccccCCcEEEEeccCCCCCCCceeHHHHH
Confidence            99999999999999999988888888888886543 3567899999999999999999988655 999999999999998


Q ss_pred             hh
Q 008535          551 GK  552 (562)
Q Consensus       551 ~~  552 (562)
                      ++
T Consensus       560 ~~  561 (562)
T PRK12492        560 DI  561 (562)
T ss_pred             hh
Confidence            75

>PRK13383 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=5.3e-64  Score=523.32  Aligned_cols=477  Identities=23%  Similarity=0.270  Sum_probs=396.9

Q ss_pred             CCCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceE
Q 008535           18 VPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVL   97 (562)
Q Consensus        18 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~   97 (562)
                      .+.++.+.|.++++.+|+++|+.+.+..+||+||.+++.++|++|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus        33 ~~~~~~~~~~~~a~~~p~~~a~~~~~~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~v~  112 (516)
T PRK13383         33 GGTNPYTLLAVTAARWPGRTAIIDDDGALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGADV  112 (516)
T ss_pred             cCCcHHHHHHHHHHHCCCCcEEEeCCCcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEE
Confidence            56799999999999999999999988999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCch
Q 008535           98 SALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDY  177 (562)
Q Consensus        98 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (562)
                      +|+++.++.+++..+++.++++.++++....+.+....            ..++.++...                 ...
T Consensus       113 vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~------------~~~~~~~~~~-----------------~~~  163 (516)
T PRK13383        113 VPISTEFRSDALAAALRAHHISTVVADNEFAERIAGAD------------DAVAVIDPAT-----------------AGA  163 (516)
T ss_pred             EEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhh------------cceEEeccch-----------------hhh
Confidence            99999999999999999999999999887655443321            1111111000                 000


Q ss_pred             hhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHH--HHHHHHHhhcCCCCCCeeeeecccccchhhHH
Q 008535          178 NDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAY--LNSLAQISRCDVRDMPVFLWTLDMFRCNGWCC  255 (562)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~--~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~  255 (562)
                           . .  . ...+...++.++++|||||||.||+|.++|....  .........+++..++++++.+|++|.+|+..
T Consensus       164 -----~-~--~-~~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~  234 (516)
T PRK13383        164 -----E-E--S-GGRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGLGM  234 (516)
T ss_pred             -----h-c--C-CCCCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhhccCCCCeEEEecCCcchhhHHH
Confidence                 0 0  0 0011234567899999999999999999997432  12222334567888999999999999999988


Q ss_pred             HHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhcccc--ccccccceEEEEEeCCCChHHHHHHHH-
Q 008535          256 TWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASAS--DQNQLQRKVIIVIAGVLPTIEVLEQVA-  332 (562)
Q Consensus       256 ~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~l~~l~~i~~~g~~l~~~~~~~~~-  332 (562)
                      .+.++..|++++....+++..+++.+++++++.+.++|.++..|......  ....++++|.+++||++++++..+.|. 
T Consensus       235 ~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~  314 (516)
T PRK13383        235 LMLTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRVRARNPLPQLRVVMSSGDRLDPTLGQRFMD  314 (516)
T ss_pred             HHHHHhcCCEEEECCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhccccccccCCCCceEEEEECCCCCCHHHHHHHHH
Confidence            88888899999988889999999999999999999999999999875432  123578899999999999999999988 


Q ss_pred             hcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcch
Q 008535          333 NFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRAN  412 (562)
Q Consensus       333 ~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~  412 (562)
                      .++..+++.||+||++..+..+...           .......+|.+.++. .++|++. ++.+++.+  +.|||+++|+
T Consensus       315 ~~g~~v~~~YG~tE~~~~~~~~~~~-----------~~~~~~~~G~~~~~~-~~~i~d~-~~~~~~~g--~~Gel~v~g~  379 (516)
T PRK13383        315 TYGDILYNGYGSTEVGIGALATPAD-----------LRDAPETVGKPVAGC-PVRILDR-NNRPVGPR--VTGRIFVGGE  379 (516)
T ss_pred             HcCchhhhcccccccccceeccccc-----------cccCCCcccCCCCCc-EEEEECC-CCCCCCCC--CceEEEEecC
Confidence            5788999999999997654432110           011234577777776 7888875 56666655  6799999999


Q ss_pred             hhhhhhcCCchhhHhhhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCCC
Q 008535          413 TVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQ  492 (562)
Q Consensus       413 ~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~  492 (562)
                      .++.||++.+.   ..+.+|||+|||+|++|++|++++.||.+|+||++|.+|+|.+||++|.+++.|.++++++.++..
T Consensus       380 ~~~~~Y~~~~~---~~~~~g~~~TGDl~~~d~~G~l~i~GR~~~~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~  456 (516)
T PRK13383        380 LAGTRYTDGGG---KAVVDGMTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDER  456 (516)
T ss_pred             cccccccCCch---hheecCceecceeEEEcCCccEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccc
Confidence            99999998754   334689999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHh
Q 008535          493 LKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLR  550 (562)
Q Consensus       493 ~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~  550 (562)
                      .++.+.++|++.++...+.++++++++++++.+++|..+.+++ ||+|++||++|++|+
T Consensus       457 ~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~iP~t~~gKi~r~~L~  515 (516)
T PRK13383        457 FGHRLAAFVVLHPGSGVDAAQLRDYLKDRVSRFEQPRDINIVSSIPRNPTGKVLRKELP  515 (516)
T ss_pred             cCceEEEEEEECCCCCCCHHHHHHHHHHhcccCCCCcEEEEeCCCCCCCCCcCcHHHhC
Confidence            8899999999887766678899999999999999999888655 999999999999885

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=100.00  E-value=2.2e-64  Score=582.74  Aligned_cols=516  Identities=19%  Similarity=0.173  Sum_probs=399.8

Q ss_pred             CCChHHHHHHHHHHcCCceEEEE---------CCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Q 008535           19 PLTPIDFLERAAHVYGDATSIIY---------GTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFA   89 (562)
Q Consensus        19 ~~ti~~~l~~~a~~~p~~~a~~~---------~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA   89 (562)
                      ..++.++|+++++.+|+++|+++         .++++||+||.++++++|++|.+.|+++||+|+++++|+++++++++|
T Consensus       235 ~~~l~~~~~~~a~~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~~lA  314 (1389)
T TIGR03443       235 RGAIHDIFADNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMG  314 (1389)
T ss_pred             cCcHHHHHHHHHHhCCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHHH
Confidence            45899999999999999999985         346899999999999999999999999999999999999999999999


Q ss_pred             hhhccceEEecCCCCCHHHHHHHHhhCCceEEEEeccch---HHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccc
Q 008535           90 VPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFV---EVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSV  166 (562)
Q Consensus        90 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (562)
                      |+++|++++|++|.++.+++.++++.+++++++++....   ..+..........  ....+.+. +.+.....      
T Consensus       315 ~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~------  385 (1389)
T TIGR03443       315 VLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELEL--RTEIPALA-LQDDGSLV------  385 (1389)
T ss_pred             HHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhccccc--ccccceEE-eccccccc------
Confidence            999999999999999999999999999999999876421   1111111000000  00011111 11100000      


Q ss_pred             cCCCCCCCCchhhhhhccc--CccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeee
Q 008535          167 ANNFPSGSLDYNDLLEMGK--ADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWT  244 (562)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~  244 (562)
                      .....   ....+......  ..........++++++|+|||||||.||||+++|+++.....+....+++.+.|+++..
T Consensus       386 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~  462 (1389)
T TIGR03443       386 GGSLE---GGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGLSENDKFTML  462 (1389)
T ss_pred             ccccc---cccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEe
Confidence            00000   00000000000  00001112356899999999999999999999999999988888888999999999999


Q ss_pred             cccccchhhHHHHHhHhhceEEEEecc---CCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCC
Q 008535          245 LDMFRCNGWCCTWAMAAVGGINVCIRT---VSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGV  321 (562)
Q Consensus       245 ~pl~~~~gl~~~~~~~~~g~~~v~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~  321 (562)
                      .|++|..++..++.+++.|+++++.+.   .++..+.+.++++++|+++++|++++.|....   ...++++|.+++||+
T Consensus       463 ~~~~~d~~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~~~~lr~~~~gGe  539 (1389)
T TIGR03443       463 SGIAHDPIQRDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQA---TTPIPSLHHAFFVGD  539 (1389)
T ss_pred             cCceecchHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcc---cccCCCccEEEEecc
Confidence            999999999899999999999988754   36889999999999999999999999987543   245789999999999


Q ss_pred             CChHHHHHHHHhc--CCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCC-ccccc
Q 008535          322 LPTIEVLEQVANF--GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNT-MKSVP  398 (562)
Q Consensus       322 ~l~~~~~~~~~~~--~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~-~~~~~  398 (562)
                      +++.+..+.+++.  ++++++.||+||++..++............ ..........+|.+.++. .+.|++.+. +.+++
T Consensus       540 ~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~G~~~~~~-~~~ivd~~~~~~~~~  617 (1389)
T TIGR03443       540 ILTKRDCLRLQTLAENVCIVNMYGTTETQRAVSYFEIPSRSSDST-FLKNLKDVMPAGKGMKNV-QLLVVNRNDRTQTCG  617 (1389)
T ss_pred             cCCHHHHHHHHHhCCCCEEEECccCCccceeEEEEEccccccccc-hhhcccCcCcCCCccCCC-EEEEECCccCCCcCC
Confidence            9999999888754  789999999999976655433211110000 000001123567776665 677777533 35566


Q ss_pred             CCCCceeEEEEcchhhhhhhcCCchhhHhhhc-----------------------------cceeeeCceeEEcCCCcEE
Q 008535          399 HDGKTLGEVMFRANTVMLGYFKNPKATEEAFR-----------------------------NGWYHTGDLAVRNPDGYVQ  449 (562)
Q Consensus       399 ~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-----------------------------~g~~~TGD~~~~~~~g~l~  449 (562)
                      .|  +.|||+|+|++++.||+++|+.|.+.|.                             ++||+|||+|++++||.++
T Consensus       618 ~G--~~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~dG~l~  695 (1389)
T TIGR03443       618 VG--EVGEIYVRAGGLAEGYLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLPDGNVE  695 (1389)
T ss_pred             CC--CceEEEecccccchhcCCChhHhhhhccCCcccCcccccccccccccccccccCCCccceeecCCceeEcCCCCEE
Confidence            55  7799999999999999999999998872                             5799999999999999999


Q ss_pred             EeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCC-C--------------------
Q 008535          450 MKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGR-E--------------------  508 (562)
Q Consensus       450 ~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~-~--------------------  508 (562)
                      +.||.||+||++|++|+|.+||.+|.++|.|.+++|+..++...++.+++++++.... .                    
T Consensus       696 ~~GR~dd~Iki~G~rI~p~eIE~~l~~~p~V~~a~v~~~~~~~~~~~lva~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~  775 (1389)
T TIGR03443       696 CCGRADDQVKIRGFRIELGEIDTHLSQHPLVRENVTLVRRDKDEEPTLVSYIVPQDKSDELEEFKSEVDDEESSDPVVKG  775 (1389)
T ss_pred             EecccCCEEEeCcEEecHHHHHHHHHhCcchheeEEEEeeCCCCCeEEEEEEeccCccccccccccccccccccccchhh
Confidence            9999999999999999999999999999999999999888888788899999876221 0                    


Q ss_pred             -----CCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhh
Q 008535          509 -----ASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKV  553 (562)
Q Consensus       509 -----~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~  553 (562)
                           ...+++++++++++|.|++|..+.+.+ ||+|++||++|++|+..+
T Consensus       776 ~~~~~~~~~~l~~~l~~~Lp~y~~P~~~~~~~~lP~t~~GKidr~~L~~~~  826 (1389)
T TIGR03443       776 LIKYRKLIKDIREYLKKKLPSYAIPTVIVPLKKLPLNPNGKVDKPALPFPD  826 (1389)
T ss_pred             hhhhhhhHHHHHHHHHhhCCcccCCceEEEcccCCCCCCccccHhhcCCCc
Confidence                 014678999999999999999887654 999999999999997543

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=7.7e-65  Score=529.74  Aligned_cols=487  Identities=19%  Similarity=0.196  Sum_probs=374.6

Q ss_pred             hHHHHHHHHHHcCCceEEEECC----eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceE
Q 008535           22 PIDFLERAAHVYGDATSIIYGT----VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVL   97 (562)
Q Consensus        22 i~~~l~~~a~~~p~~~a~~~~~----~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~   97 (562)
                      +.+.|+++++.+|+++|+.+.+    +++||+||.++++++|+.|.+.  ++||+|+++++|+++++++++||+++|+++
T Consensus         4 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~~~~G~~~   81 (525)
T PRK05851          4 LAAALSDAMTASGRDLVVLDRESGLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGAWLAGAAV   81 (525)
T ss_pred             HHHHHHHHhcCCCCceEEeCCCCCcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHHHHcCCCC
Confidence            7889999999999999999876    7899999999999999999988  899999999999999999999999999986


Q ss_pred             EecCC-------CCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCC
Q 008535           98 SALNT-------RLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNF  170 (562)
Q Consensus        98 v~l~~-------~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (562)
                      ++++.       ....+++.++++.+++++++++....+.+......             +.+.+..             
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~-------------~~~~~~~-------------  135 (525)
T PRK05851         82 SILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDSS-------------VTVHDLA-------------  135 (525)
T ss_pred             cCCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhcc-------------ccccccc-------------
Confidence            54431       12234556778999999999987655443321110             0000000             


Q ss_pred             CCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCC-CCCeeeeeccccc
Q 008535          171 PSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVR-DMPVFLWTLDMFR  249 (562)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~-~~~~~l~~~pl~~  249 (562)
                              ..... .... ...+..++++++|+|||||||.||||.+||+++..........+++. .+|+++..+|++|
T Consensus       136 --------~~~~~-~~~~-~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h  205 (525)
T PRK05851        136 --------TAAHT-NRSA-SLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLPLYH  205 (525)
T ss_pred             --------ccccc-cccc-cCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCCCCeEEEcCCCcc
Confidence                    00000 0000 00123567999999999999999999999999999888888888888 8999999999999


Q ss_pred             chhhHHHHHhHhhceEEEEecc--C--CHHHHHHHHHhcCeEEEEcchHHHHHHHhccc-cccccccceEEEEEeCCCCh
Q 008535          250 CNGWCCTWAMAAVGGINVCIRT--V--SAKIIFDSILIHKVTHLCGQPRILNMIANASA-SDQNQLQRKVIIVIAGVLPT  324 (562)
Q Consensus       250 ~~gl~~~~~~~~~g~~~v~~~~--~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~-~~~~~l~~l~~i~~~g~~l~  324 (562)
                      .+++...+.+++.|+++++.+.  +  ++..+++.+.+++++++..+|.++..+..... .....++++|.+++||++++
T Consensus       206 ~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~~~~~~l~~lr~~~~gG~~l~  285 (525)
T PRK05851        206 DMGLAFLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARRVSDVDLGALRVALNGGEPVD  285 (525)
T ss_pred             CccHHHHHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhccccCCCHHHhheeEeccccCC
Confidence            9999888888999999988763  3  67889999999999988665555555543321 22345789999999999999


Q ss_pred             HHHHHHHHh----cCC---eeeccccCccccCcccccccCCCCCCCcC---CccccccccccCccccccccceecccCCc
Q 008535          325 IEVLEQVAN----FGF---NIRHAYGMTEVLGPAIVRQWKPEGESSAL---DHEHEMTKHREGLNNLLIQGVDVKQQNTM  394 (562)
Q Consensus       325 ~~~~~~~~~----~~~---~l~~~YG~tE~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~i~~~~~~  394 (562)
                      ++..+.|.+    +|+   ++++.||+||++..++.............   ..........+|.|.++. .++|++.+..
T Consensus       286 ~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~-~v~i~d~~~~  364 (525)
T PRK05851        286 CDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGM-EVRISPGDGA  364 (525)
T ss_pred             HHHHHHHHHHHhhcCCChhhcccccchhhhceEEEecCCCCCceeeeeccccCcccceeeeecCCCCCc-EEEEECCCCC
Confidence            998888763    354   49999999999765443211100000000   000111234678888877 7888876544


Q ss_pred             ccccCCCCceeEEEEcchhhhhhhcCCchhhHhhhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHH
Q 008535          395 KSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVL  474 (562)
Q Consensus       395 ~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l  474 (562)
                      .+++.+  +.|||+++|++++.||++++..+    .+|||+|||+|+++ +|.++++||.||+||++|++|+|.+||++|
T Consensus       365 ~~~~~g--~~GEl~v~g~~~~~GY~~~~~~~----~~~~~~TGDl~~~~-~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l  437 (525)
T PRK05851        365 AGVAGR--EIGEIEIRGASMMSGYLGQAPID----PDDWFPTGDLGYLV-DGGLVVCGRAKELITVAGRNIFPTEIERVA  437 (525)
T ss_pred             ccCCCC--CeEEEEEecCchhhccccCCccC----CCCceeccceEEEE-CCEEEEEeecCCEEEECCEEeCHHHHHHHH
Confidence            456655  77999999999999999988643    37899999999997 799999999999999999999999999999


Q ss_pred             hcCCCceeEEEEeeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCC--CCCcEEEee---cccCCCCCcchHHHH
Q 008535          475 LSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSC--MVPRAIFFE---DIPVNSTGKVQKFVL  549 (562)
Q Consensus       475 ~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~--~~p~~i~~~---~lP~t~~GKv~r~~l  549 (562)
                      .++|.|.+++|++++++..++.+.++++... ...+.+++.++++++++.+  ++|+.+.++   +||+|++||++|++|
T Consensus       438 ~~~p~V~~~~vv~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~l~~~l~~~P~~~~~v~~~~lP~t~~GKi~r~~L  516 (525)
T PRK05851        438 AQVRGVREGAVVAVGTGEGSARPGLVIAAEF-RGPDEAGARSEVVQRVASECGVVPSDVVFVAPGSLPRTSSGKLRRLAV  516 (525)
T ss_pred             HhCCCcccceEEEEEecCCCCceeEEEEEEe-cCcchHHHHHHHHHHHHHHhCCCccEEEEECCCCcCcCcchHHHHHHH
Confidence            9999999999999998888877766665432 1234566777777777766  899988866   499999999999999


Q ss_pred             hhhhhh
Q 008535          550 RGKVNA  555 (562)
Q Consensus       550 ~~~~~~  555 (562)
                      ++.+++
T Consensus       517 ~~~~~~  522 (525)
T PRK05851        517 KRSLEA  522 (525)
T ss_pred             HHHHHh
Confidence            998865

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2e-63  Score=523.83  Aligned_cols=514  Identities=24%  Similarity=0.305  Sum_probs=407.9

Q ss_pred             CCCCCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccc
Q 008535           16 NNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGA   95 (562)
Q Consensus        16 ~~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~   95 (562)
                      +....++.++|.++++.+|+++|+.+.+..+||.||.++++++|..|.+.|+++||+|+++++|+++++++++||+++|+
T Consensus        19 ~~~~~~i~~~l~~~a~~~p~~~a~~~~~~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~   98 (557)
T PRK07059         19 ASQYPSLADLLEESFRQYADRPAFICMGKAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGY   98 (557)
T ss_pred             CCCCCCHHHHHHHHHHHcCCCceEEEcCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCe
Confidence            34456899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCC--C---------cc
Q 008535           96 VLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQP--S---------TC  164 (562)
Q Consensus        96 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---------~~  164 (562)
                      +++|++|.++.+++.++++.++++++++++.....+........       ...++..........  .         ..
T Consensus        99 ~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (557)
T PRK07059         99 VVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAKTA-------VKHVVVASMGDLLGFKGHIVNFVVRRVKK  171 (557)
T ss_pred             EEeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhcccC-------CceeEEecccccccccccccccccccccc
Confidence            99999999999999999999999999998876655544332211       111111110000000  0         00


Q ss_pred             cccCCCCCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcC----C---CC
Q 008535          165 SVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCD----V---RD  237 (562)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~----~---~~  237 (562)
                      ........+...+.+................++++++++|||||||.||+|.++|.++..+.......+.    .   ..
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~  251 (557)
T PRK07059        172 MVPAWSLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPD  251 (557)
T ss_pred             cccccCCCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCCC
Confidence            0000011122334444433222222223346789999999999999999999999998776544332221    1   12


Q ss_pred             CCeeeeecccccchhhH-HHHHhHhhceEEEEec-cCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEE
Q 008535          238 MPVFLWTLDMFRCNGWC-CTWAMAAVGGINVCIR-TVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVI  315 (562)
Q Consensus       238 ~~~~l~~~pl~~~~gl~-~~~~~~~~g~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~  315 (562)
                      ...+++.+|++|.+++. ..+..+..|++.++.+ ..++..+++.+++++++.+.++|.++..+..........+++++.
T Consensus       252 ~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~  331 (557)
T PRK07059        252 QLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLDFSKLIV  331 (557)
T ss_pred             CcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcCcCCchhheE
Confidence            34678889999998865 4556667788777665 458899999999999999999999999998876655567889999


Q ss_pred             EEEeCCCChHHHHHHHH-hcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCc
Q 008535          316 IVIAGVLPTIEVLEQVA-NFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTM  394 (562)
Q Consensus       316 i~~~g~~l~~~~~~~~~-~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~  394 (562)
                      ++.||+++++...+.|. .++.++++.||+||++.+++.+....           ......+|.|.++. .+++++. ++
T Consensus       332 ~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~-----------~~~~~~vG~p~~g~-~v~i~d~-~~  398 (557)
T PRK07059        332 ANGGGMAVQRPVAERWLEMTGCPITEGYGLSETSPVATCNPVDA-----------TEFSGTIGLPLPST-EVSIRDD-DG  398 (557)
T ss_pred             EEeccccCCHHHHHHHHHHhCCCeeeccccccccchhhcCCCCC-----------CCcCCcccCccCCc-EEEEECC-CC
Confidence            99999999999998887 56899999999999987655432110           11234677777776 7888875 56


Q ss_pred             ccccCCCCceeEEEEcchhhhhhhcCCchhhHhhh-ccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHH
Q 008535          395 KSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAF-RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAV  473 (562)
Q Consensus       395 ~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~  473 (562)
                      .+++.+  +.|||+++|+.++.||+++++.+...| .+|||+|||+++++++|.+++.||.+|+|+++|.+|+|.+||++
T Consensus       399 ~~~~~g--~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~p~~iE~~  476 (557)
T PRK07059        399 NDLPLG--EPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEV  476 (557)
T ss_pred             CCCCCC--CceEEEEeCCccchhhhcCHHHHhhhcccCCceecCcEEEEcCCCcEEEecccccceEECCEEEcHHHHHHH
Confidence            777666  679999999999999999999888877 48999999999999999999999999999999999999999999


Q ss_pred             HhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhh
Q 008535          474 LLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGK  552 (562)
Q Consensus       474 l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~  552 (562)
                      +.++++|.+++|++.++...++.++++++..+. ..+.++++++++++++.+.+|..+.+++ +|+|++||++|+.|++.
T Consensus       477 l~~~~~V~~~~v~~~~~~~~ge~~~~~v~~~~~-~~~~~~l~~~~~~~l~~~~~P~~i~~v~~~P~t~~GK~~r~~L~~~  555 (557)
T PRK07059        477 VASHPGVLEVAAVGVPDEHSGEAVKLFVVKKDP-ALTEEDVKAFCKERLTNYKRPKFVEFRTELPKTNVGKILRRELRDG  555 (557)
T ss_pred             HHhCCceeEEEEEecccCCCCeeEEEEEEeCCC-CCCHHHHHHHHHHhcccccCCcEEEEeccCCCCcccceeHHHHHhh
Confidence            999999999999999998888888888886543 4567899999999999999999988655 99999999999999864

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=100.00  E-value=3.4e-63  Score=520.32  Aligned_cols=512  Identities=24%  Similarity=0.305  Sum_probs=402.3

Q ss_pred             CCCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceE
Q 008535           18 VPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVL   97 (562)
Q Consensus        18 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~   97 (562)
                      ++.++.++|+++++.+|+++|+.+.++.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus        19 ~~~~~~~~~~~~~~~~p~~~a~~~~~~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~   98 (541)
T TIGR03205        19 ARGTLPDLLSKAAADYGPRPALEFRDRPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFFGALKAGARV   98 (541)
T ss_pred             CCCCHHHHHHHHHHHcCCCceEEECCcEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEE
Confidence            35599999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCch
Q 008535           98 SALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDY  177 (562)
Q Consensus        98 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (562)
                      +|++|..+.+++.++++.++++++++++.. .......+......    ...++.+......................++
T Consensus        99 v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (541)
T TIGR03205        99 VHLSPLDGERALSHKLSDSGARLLITSDLA-ALLPMALKFLEKGL----LDRLIVCEDDNWGKVGTPQAPIPADPRIVTY  173 (541)
T ss_pred             EecCCCCCHHHHHHHHhhcCceEEEEeCch-hhhHHHHHhhhccc----ceEEEEecccccccccccccccCCCcccccH
Confidence            999999999999999999999999998642 11111111111000    1222222211100000000000001123445


Q ss_pred             hhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhh------cCCCCCCeeeeecccccch
Q 008535          178 NDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISR------CDVRDMPVFLWTLDMFRCN  251 (562)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~------~~~~~~~~~l~~~pl~~~~  251 (562)
                      .++....... .......++++++++|||||||.||+|.++|+++...... ...      ......+++++..|++|.+
T Consensus       174 ~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~p~~~~~  251 (541)
T TIGR03205       174 ADFVKGAAAP-AEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSI-YDVWGKPSRATRGDVERVICVLPLFHIY  251 (541)
T ss_pred             HHHHhcCCCC-CCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHH-HHhhcccccccCCCCceEEEeccHHHHH
Confidence            5554322111 1112345679999999999999999999999998654332 121      1223457899999999988


Q ss_pred             hhHH-HHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHH
Q 008535          252 GWCC-TWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQ  330 (562)
Q Consensus       252 gl~~-~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~  330 (562)
                      ++.. ++.++..|++++.....++..+++.|.+++++++.++|.+++.|++........+++++.++.||++++++..++
T Consensus       252 ~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~i~~gg~~~~~~~~~~  331 (541)
T TIGR03205       252 ALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLEKRDLSSLATIGSGGAPLPVEVANF  331 (541)
T ss_pred             HHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCccccccCccccceEEEccccCCHHHHHH
Confidence            8765 556677788887777789999999999999999999999999998765444456789999999999999999998


Q ss_pred             HH-hcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecc-cCCcccccCCCCceeEEE
Q 008535          331 VA-NFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQ-QNTMKSVPHDGKTLGEVM  408 (562)
Q Consensus       331 ~~-~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~-~~~~~~~~~~~~~~Gel~  408 (562)
                      ++ .++.++++.||+||++..++.....           .......+|.+.++. .+++.+ .+.+..++.+  +.|||+
T Consensus       332 ~~~~~~~~~~~~YG~TE~~~~~~~~~~~-----------~~~~~~~~G~~~~~~-~~~v~~~d~~~~~~~~g--~~Gel~  397 (541)
T TIGR03205       332 FERKTGLKLKSGWGMTETCSPGTGHPPE-----------GPDKPGSIGLMLPGI-ELDVVSLDDPTKVLPPG--EVGELR  397 (541)
T ss_pred             HHHHhCCCeecccccccCCcccccCCCC-----------CCCCCCCcceeccCc-eeEEEecCCCCccCCCC--CeeEEE
Confidence            87 4689999999999998766543211           011123567666666 666654 2455666654  679999


Q ss_pred             EcchhhhhhhcCCchhhHhhhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEee
Q 008535          409 FRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGK  488 (562)
Q Consensus       409 v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~  488 (562)
                      ++|++++.||+++++.+.+.|.++||+|||+++++++|++++.||.+|+||.+|.+++|.+||+.+.+++.|.+++|++.
T Consensus       398 v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~  477 (541)
T TIGR03205       398 IRGPNVTRGYWNRPEESAEAFVGDRFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGI  477 (541)
T ss_pred             EecCCccccccCChhhhHhhhccCCcccCceEEEcCCceEEEEccccCeEEECCEEECHHHHHHHHHhCCCeeeEEEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCceeEEEEEeCCCCC-CCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHh
Q 008535          489 VDDQLKEVPVAFVKLKEGRE-ASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLR  550 (562)
Q Consensus       489 ~~~~~~~~~v~~v~~~~~~~-~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~  550 (562)
                      +++..++.+++++++.++.. .+.+++.++++++++++++|..+.+++ ||+|++||++|++|+
T Consensus       478 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~iP~t~~gK~~r~~l~  541 (541)
T TIGR03205       478 PDQYRGEAAKAFVKLRPGAKPFSLDELRAFLAGKLGKHELPVAVEFVDELPRTPVGKLSRHELR  541 (541)
T ss_pred             CCcccCceEEEEEEECCCCCcCCHHHHHHHHHhhcccccCCcEEEEeccCCCCcccceeHhhcC
Confidence            98888888999998876532 567899999999999999999888655 999999999999874

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=100.00  E-value=2.3e-64  Score=507.86  Aligned_cols=501  Identities=23%  Similarity=0.277  Sum_probs=377.9

Q ss_pred             CCChHHHHHHHHHHcCCceEEEEC----CeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhcc
Q 008535           19 PLTPIDFLERAAHVYGDATSIIYG----TVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAG   94 (562)
Q Consensus        19 ~~ti~~~l~~~a~~~p~~~a~~~~----~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G   94 (562)
                      ..++..++.++++.+|+.+++...    ...+||+|+++++.++|.+|.+.|+.+||+|+|++.|+++|+++.+||+.+|
T Consensus        15 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d~a~~~~g   94 (613)
T COG1022          15 IHTLPKRLAERVKDRPDGVALMYKELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALG   94 (613)
T ss_pred             cccHHHHHHHHhhcCCcceeEeeecCCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHHcC
Confidence            458899999999999999898864    3789999999999999999999999779999999999999999999999999


Q ss_pred             ceEEecCCCCCHHHHHHHHhhCCceEEEEeccchH-HHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCC
Q 008535           95 AVLSALNTRLDSATLASILRQLEAKIIFVDYQFVE-VVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSG  173 (562)
Q Consensus        95 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (562)
                      ++.||+.++.+++++.++|++++++++|++..... .+.......+... .  ........... ..+...........+
T Consensus        95 ~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~-~~~~~~~~~~~~~~~  170 (613)
T COG1022          95 AVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVV-D--LIVIIDLVREA-VEAKALVLEVFPDEG  170 (613)
T ss_pred             CeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchh-h--hhhhhhhhhhc-cchhhcccccccccc
Confidence            99999999999999999999999999999985433 3332222111100 0  00000000000 000000000000001


Q ss_pred             CCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcC-CCCCCeeeeecccccchh
Q 008535          174 SLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCD-VRDMPVFLWTLDMFRCNG  252 (562)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~-~~~~~~~l~~~pl~~~~g  252 (562)
                      ...+ .  ...........+..++|.|.|+|||||||.||||++||+|+.++.......+. .+++|+.++.+|+.|++.
T Consensus       171 ~~~~-~--~~~~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~~~~d~~LsfLPlaHi~E  247 (613)
T COG1022         171 ISLF-L--IDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFE  247 (613)
T ss_pred             chhh-h--hcccccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCCCCCcEEEEeCcHHHHHH
Confidence            1111 0  11111112224567899999999999999999999999999999999999996 999999999999999999


Q ss_pred             hHHHHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccc--------------------------
Q 008535          253 WCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASD--------------------------  306 (562)
Q Consensus       253 l~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~--------------------------  306 (562)
                      ..+....... +........++..++..+++++||+++++|.+|+.+.+....+                          
T Consensus       248 r~~~~~~~~~-~g~~~~~~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~~~~~  326 (613)
T COG1022         248 RAFEGGLALY-GGVTVLFKEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRA  326 (613)
T ss_pred             HHHHHHHHhh-cceEEEecCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhh
Confidence            8865333333 3344445679999999999999999999999999885532100                          


Q ss_pred             ---------------------cccc-cceEEEEEeCCCChHHHHHHHHhcCCeeeccccCccccCcccccccCCCCCCCc
Q 008535          307 ---------------------QNQL-QRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSA  364 (562)
Q Consensus       307 ---------------------~~~l-~~l~~i~~~g~~l~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~  364 (562)
                                           ...+ ..+|.+++||+++++++...|+..|+++.++||+|||++.++....        
T Consensus       327 ~~~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~lGi~i~eGYGlTEts~~~~v~~~--------  398 (613)
T COG1022         327 LLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSLGIPILEGYGLTETSAVVSVNPP--------  398 (613)
T ss_pred             hcccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHcCCCeEEEecccccccceEEccc--------
Confidence                                 0011 3789999999999999999999999999999999999988887532        


Q ss_pred             CCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhhhhhhcCCchhhHhhhc-cceeeeCceeEEc
Q 008535          365 LDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFR-NGWYHTGDLAVRN  443 (562)
Q Consensus       365 ~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TGD~~~~~  443 (562)
                          .......+|.|.++. +++|.+.             |||+|+||++|+|||++|+.|.+.|. ||||+|||+|.+|
T Consensus       399 ----~~~~~gtvG~p~p~~-evKI~d~-------------GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~d  460 (613)
T COG1022         399 ----DRFVLGTVGKPLPGI-EVKIADD-------------GEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELD  460 (613)
T ss_pred             ----cCcccCCcCCcCCCc-eEEEccC-------------ceEEEecchhcchhcCChHHHhhhccccCCcccCceeEEc
Confidence                223345667777776 6677663             99999999999999999999999997 9999999999999


Q ss_pred             CCCcEEEeccccceee-cCCeEechHHHHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCCC------------CC
Q 008535          444 PDGYVQMKDRRKDIII-SGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGRE------------AS  510 (562)
Q Consensus       444 ~~g~l~~~GR~~d~i~-~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~------------~~  510 (562)
                      ++|+|+++||.+|+|| .+|++|.|+.||+.+.++|.|.+++|++ +++   ..++++|+++...-            .+
T Consensus       461 ~~g~L~i~gRkK~~i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg-~~k---~~~~AlIvp~~~~l~~~a~~~~~~~~~~  536 (613)
T COG1022         461 EDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVG-DDK---KFLVALIVPDFDALEKWAESLNKVISAS  536 (613)
T ss_pred             CCCcEEEeecccceEECCCCcccChHHHHHHHhcCCCeeEEEEEe-cCC---cceEEEEeCCHHHHHHHHHhccccccCC
Confidence            9999999999999999 8999999999999999999999999998 332   24788888764310            01


Q ss_pred             H------HHHHHHH----h---ccCCCCCCCcEEEeec-------ccCCCCCcchHHHHhhhhhhhc
Q 008535          511 P------EELVTFC----G---DELPSCMVPRAIFFED-------IPVNSTGKVQKFVLRGKVNATA  557 (562)
Q Consensus       511 ~------~~l~~~~----~---~~l~~~~~p~~i~~~~-------lP~t~~GKv~r~~l~~~~~~~~  557 (562)
                      .      .++.+.+    .   .....+..+..+.+..       --.|++-|++|..+.+.|.+.-
T Consensus       537 ~~~l~~~~~l~~~~~~~i~~~~~~~~~~E~i~~~~~~~~~~t~~~~~~t~t~klkR~~i~~~~~~~i  603 (613)
T COG1022         537 REELARDPKLLKLILPRVNKGNKRLFGFEQIKKFVLLPKEFTPENGELTPTLKLKRHVILDRYKDEI  603 (613)
T ss_pred             HHHHhhCHHHHHHHHHHHHHHhhcccchhhhheeeecccccccccCccccchhhhHHHHHHhhhhHH
Confidence            1      1122221    1   1123334444444333       2378999999999998887764

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=7.6e-65  Score=622.55  Aligned_cols=488  Identities=21%  Similarity=0.232  Sum_probs=414.1

Q ss_pred             CCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEE
Q 008535           19 PLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLS   98 (562)
Q Consensus        19 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v   98 (562)
                      ..++.++|+++++.+|+++|+++.++++||+||.++++++|+.|.+.|+++|++|+++++|++++++++|||+++|++++
T Consensus      3094 ~~~~~~l~~~~a~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~lavl~aGa~~v 3173 (3956)
T PRK12467       3094 ERLVHQLIEAQVARTPEAPALVFGDQQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLAVLKAGGAYV 3173 (3956)
T ss_pred             cccHHHHHHHHHHhCCCcceEeeCCcccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHHHHHHhhCcEee
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCchh
Q 008535           99 ALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYN  178 (562)
Q Consensus        99 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (562)
                      |++|.++.+++.++++.+++++++++....+.+....           ....+.++....                    
T Consensus      3174 pld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~~-----------~~~~~~~~~~~~-------------------- 3222 (3956)
T PRK12467       3174 PLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAPA-----------GDTALTLDRLDL-------------------- 3222 (3956)
T ss_pred             cCCCCChHHHHHHHHhCCCCcEEEechhhhhhccccc-----------CCceeeecchhh--------------------
Confidence            9999999999999999999999999876543321100           111111111100                    


Q ss_pred             hhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHHHHH
Q 008535          179 DLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWA  258 (562)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~~~~  258 (562)
                          .............++++++|+|||||||.||||+++|+++.....+....+++.++|+++...|++|..++...+.
T Consensus      3223 ----~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~ 3298 (3956)
T PRK12467       3223 ----NGYSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYELDANDRVLLFMSFSFDGAQERFLW 3298 (3956)
T ss_pred             ----cccCCCCCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhcCCCcCCEEEEecCccHhHHHHHHHH
Confidence                0000001112246789999999999999999999999999999999989999999999999999999999999999


Q ss_pred             hHhhceEEEEecc--CCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHHh-c-
Q 008535          259 MAAVGGINVCIRT--VSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVAN-F-  334 (562)
Q Consensus       259 ~~~~g~~~v~~~~--~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~~-~-  334 (562)
                      ++..|+++++.+.  .++..+++.++++++|++..+|++++.|++...  ...++++|.+++|||+++++..+.|.+ + 
T Consensus      3299 ~L~~G~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~--~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~ 3376 (3956)
T PRK12467       3299 TLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAG--GADCASLDIYVFGGEAVPPAAFEQVKRKLK 3376 (3956)
T ss_pred             HHhCCCEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhccc--ccCCCCceEEEEecCCCCHHHHHHHHHhCC
Confidence            9999999998875  789999999999999999999999999986542  346788999999999999999999874 3 


Q ss_pred             CCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhh
Q 008535          335 GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTV  414 (562)
Q Consensus       335 ~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~  414 (562)
                      +.++++.||+||++..++.......       .........+|.|.++. .+.|+|. .+++++.|  +.|||+|+|+.+
T Consensus      3377 ~~~l~n~YG~TE~~~~~~~~~~~~~-------~~~~~~~~~iG~p~~~~-~~~v~d~-~~~~vp~G--~~GEL~i~G~~v 3445 (3956)
T PRK12467       3377 PRGLTNGYGPTEAVVTVTLWKCGGD-------AVCEAPYAPIGRPVAGR-SIYVLDG-QLNPVPVG--VAGELYIGGVGL 3445 (3956)
T ss_pred             CCEEEeCcccchhEeeeEEEecccc-------cccCCCCCCCccccCCC-EEEEECC-CCCCCCCC--CCceEEEcchhh
Confidence            6789999999999876665432110       11112235678888887 8888875 67788776  789999999999


Q ss_pred             hhhhcCCchhhHhhhc--------cceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEE
Q 008535          415 MLGYFKNPKATEEAFR--------NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVV  486 (562)
Q Consensus       415 ~~gy~~~~~~~~~~~~--------~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~  486 (562)
                      ++||+++++.|.++|.        ++||||||+|++++||+++++||.||+||++|.+|+|.|||++|.++|+|.+++|+
T Consensus      3446 ~~GY~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rIe~~EIE~~l~~~p~V~~a~v~ 3525 (3956)
T PRK12467       3446 ARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLLQHPSVREAVVL 3525 (3956)
T ss_pred             hhhccCCcccchhhccCCCCCCCCceeeccchhheecCCCcEEEeccccceEeeceEeecHHHHHHHHhhCcccceEEEE
Confidence            9999999999999983        24799999999999999999999999999999999999999999999999999999


Q ss_pred             eeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhh
Q 008535          487 GKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNA  555 (562)
Q Consensus       487 ~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~  555 (562)
                      ..++ ..++.++++++.........+++++++++++|.|++|..+.+.+ ||+|++||++|++|++....
T Consensus      3526 ~~~~-~~~~~lva~v~~~~~~~~~~~~l~~~l~~~Lp~y~vP~~~~~l~~lP~t~~GKidR~~L~~~~~~ 3594 (3956)
T PRK12467       3526 ARDG-AGGKQLVAYVVPADPQGDWRETLRDHLAASLPDYMVPAQLLVLAAMPLGPNGKVDRKALPDPDAK 3594 (3956)
T ss_pred             EecC-CCCcEEEEEEeCCCCCcccHHHHHHHHhccCChhhCCCeeeeeccCCCCCCCccchhhcCCCCcc
Confidence            8754 45778999999876655678899999999999999999887554 99999999999999987654

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=4.7e-64  Score=533.46  Aligned_cols=515  Identities=22%  Similarity=0.285  Sum_probs=387.3

Q ss_pred             CCCChHHHHHHHHHHcCCceEEEEC----C-----eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Q 008535           18 VPLTPIDFLERAAHVYGDATSIIYG----T-----VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHF   88 (562)
Q Consensus        18 ~~~ti~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~l   88 (562)
                      ...|+.++|++.++.+|+++|+...    +     ..+||+||.+++.++|..|.+.|+++||+|+|+++|+++|+++++
T Consensus        40 ~~~t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~l  119 (660)
T PLN02430         40 DITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAME  119 (660)
T ss_pred             CCCCHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence            3458999999999999999998642    1     246999999999999999999999999999999999999999999


Q ss_pred             HhhhccceEEecCCCCCHHHHHHHHhhCCceEEEEeccchH-HHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCccccc
Q 008535           89 AVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVE-VVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVA  167 (562)
Q Consensus        89 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (562)
                      ||+++|++++|+++.++.+++.++++.++++++|++..... .+........      ....++.++......   ....
T Consensus       120 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~------~l~~ii~~~~~~~~~---~~~~  190 (660)
T PLN02430        120 ACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAK------RLKAIVSFTSVTEEE---SDKA  190 (660)
T ss_pred             HHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHHhhhcccCC------CceEEEEECCCChHH---hhhh
Confidence            99999999999999999999999999999999999865322 2211111010      133444443211000   0000


Q ss_pred             CCCCCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhh-----cCCCCCCeee
Q 008535          168 NNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISR-----CDVRDMPVFL  242 (562)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~-----~~~~~~~~~l  242 (562)
                      ........++.++...+........+..++|+++|+|||||||.||||++||+++..........     ..+.+.|+++
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~~d~~l  270 (660)
T PLN02430        191 SQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYL  270 (660)
T ss_pred             hcCCcEEEEHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCCCCCCEEE
Confidence            00001124566665443322222223457899999999999999999999999998776654332     2467889999


Q ss_pred             eecccccchhhHHHHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccc----------------
Q 008535          243 WTLDMFRCNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASD----------------  306 (562)
Q Consensus       243 ~~~pl~~~~gl~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~----------------  306 (562)
                      +.+|++|.++....+.++..|+++++... ++..+++.+++++||++.++|.+++.+.+.....                
T Consensus       271 s~lPl~H~~~~~~~~~~l~~G~~i~~~~~-~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~  349 (660)
T PLN02430        271 SFLPLAHILDRMIEEYFFRKGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALY  349 (660)
T ss_pred             EeCcHHHHHHHHHHHHHHHcCCEEEEeCC-ChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            99999999998877677778888776643 7888999999999999999999998886521100                


Q ss_pred             ---------------c-------------ccc-cceEEEEEeCCCChHHHHHHHHhcC-CeeeccccCccccCccccccc
Q 008535          307 ---------------Q-------------NQL-QRKVIIVIAGVLPTIEVLEQVANFG-FNIRHAYGMTEVLGPAIVRQW  356 (562)
Q Consensus       307 ---------------~-------------~~l-~~l~~i~~~g~~l~~~~~~~~~~~~-~~l~~~YG~tE~~~~~~~~~~  356 (562)
                                     .             ..+ +++|.+++||+++++++.+.++.++ ..+++.||+||+++.++....
T Consensus       350 ~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~  429 (660)
T PLN02430        350 KYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTETLGPTTLGFP  429 (660)
T ss_pred             HHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHHHHhcCCCeeeecchhhhhhceEeecc
Confidence                           0             001 5799999999999999877777665 679999999999876654321


Q ss_pred             CCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhhhhhhcCCchhhHhhhccceeee
Q 008535          357 KPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHT  436 (562)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~T  436 (562)
                      .           .......+|.|.++. .+++.+.++....+.+.+..|||+|+|++++.|||++++.|...|.+|||+|
T Consensus       430 ~-----------~~~~~gsvG~p~~~~-evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~GY~~~~e~t~~~~~dGw~~T  497 (660)
T PLN02430        430 D-----------EMCMLGTVGAPAVYN-ELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPELTEEVMKDGWFHT  497 (660)
T ss_pred             c-----------cCCCCCCccCCCCce-EEEEEEcCCcCcccCCCCCcceEEecCCCccccccCChHHhhhhhhccceec
Confidence            0           011234567777666 7777653222222333335699999999999999999999999999999999


Q ss_pred             CceeEEcCCCcEEEeccccceee-cCCeEechHHHHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCC--------
Q 008535          437 GDLAVRNPDGYVQMKDRRKDIII-SGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGR--------  507 (562)
Q Consensus       437 GD~~~~~~~g~l~~~GR~~d~i~-~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~--------  507 (562)
                      ||+|++|+||++++.||.+|+|| .+|++|+|.+||.++.++|.|.+++|++..   .++.++++|++++..        
T Consensus       498 GDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G~~---~~~~~~A~vv~~~~~~~~~~~~~  574 (660)
T PLN02430        498 GDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDS---FKSMLVAVVVPNEENTNKWAKDN  574 (660)
T ss_pred             cceEEECCCCcEEEEEcccccEEcCCCcEEchHHHHHHHhcCCCeeEEEEEecC---CcceEEEEEEcCHHHHHHHHHhC
Confidence            99999999999999999999999 579999999999999999999999999832   356789999876421        


Q ss_pred             --CCC------HHHHH----H----HH-hccCCCCCCCcEEEeec--c-----cCCCCCcchHHHHhhhhhhhc
Q 008535          508 --EAS------PEELV----T----FC-GDELPSCMVPRAIFFED--I-----PVNSTGKVQKFVLRGKVNATA  557 (562)
Q Consensus       508 --~~~------~~~l~----~----~~-~~~l~~~~~p~~i~~~~--l-----P~t~~GKv~r~~l~~~~~~~~  557 (562)
                        ..+      ..+++    +    .. ++.++.+.+++.+.+.+  +     .+|+++|++|+.+.+.|.+.-
T Consensus       575 ~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~~~e~i~~~~l~~~~~~~~~g~lT~t~K~~R~~i~~~y~~~i  648 (660)
T PLN02430        575 GFTGSFEELCSLPELKEHILSELKSTAEKNKLRGFEYIKGVILETKPFDVERDLVTATLKKRRNNLLKYYQVEI  648 (660)
T ss_pred             CCCCCHHHHhcCHHHHHHHHHHHHHHHHHhCCCCceeeeEEEEECCCCCCcCCcCChhhhhhhHHHHHHHHHHH
Confidence              001      01222    2    22 23589999999988765  3     389999999999999887653

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=7.5e-64  Score=571.24  Aligned_cols=516  Identities=22%  Similarity=0.240  Sum_probs=417.0

Q ss_pred             CCCCChHHHHHHHHHHcCCceEEEEC-CeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccc
Q 008535           17 NVPLTPIDFLERAAHVYGDATSIIYG-TVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGA   95 (562)
Q Consensus        17 ~~~~ti~~~l~~~a~~~p~~~a~~~~-~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~   95 (562)
                      ....++.++++++++.+|+++|+.+. ++++||+||.++++++|+.|.+ ++++||+|+++++|+++++++++||+++|+
T Consensus       612 ~~~~~l~~~~~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~~~~la~~~~G~  690 (1146)
T PRK08633        612 EALPPLAEAWIDTAKRNWSRLAVADSTGGELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGALANLALLLAGK  690 (1146)
T ss_pred             CCCCCHHHHHHHHHHhcCCCcEEEcCCCCcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHHHHHHHHHHcCC
Confidence            44568999999999999999999874 5799999999999999999987 489999999999999999999999999999


Q ss_pred             eEEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCC
Q 008535           96 VLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSL  175 (562)
Q Consensus        96 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (562)
                      +++|+++..+.+++.+++++++++++++++...+.+.........    .....++..++....           .....
T Consensus       691 v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-----------~~~~~  755 (1146)
T PRK08633        691 VPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLEL----PENVKVIYLEDLKAK-----------ISKVD  755 (1146)
T ss_pred             EEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhc----ccCceEEEeehhccc-----------cchhH
Confidence            999999999999999999999999999997765544321100000    001222222211100           00001


Q ss_pred             chhhhhhcc--cCc---cccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccc
Q 008535          176 DYNDLLEMG--KAD---FEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRC  250 (562)
Q Consensus       176 ~~~~~~~~~--~~~---~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~  250 (562)
                      .+.+.....  +..   .....+..++|+++++|||||||.||+|.+||+++..+.......+++.++|++++.+|++|.
T Consensus       756 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~  835 (1146)
T PRK08633        756 KLTALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFHS  835 (1146)
T ss_pred             HHHHHHHhccCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcCCCCCCEEEEcCcHHHH
Confidence            111111110  000   000123457899999999999999999999999999988888888899999999999999999


Q ss_pred             hhhHH-HHHhHhhceEEEEec-cCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHH
Q 008535          251 NGWCC-TWAMAAVGGINVCIR-TVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVL  328 (562)
Q Consensus       251 ~gl~~-~~~~~~~g~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~  328 (562)
                      +++.. .+.++..|+++++.+ ..++..+++.++++++|++.++|.+++.+.+.......+++++|.+++||++++++..
T Consensus       836 ~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~  915 (1146)
T PRK08633        836 FGLTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHPLMFASLRLVVAGAEKLKPEVA  915 (1146)
T ss_pred             HhHHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccccCcccCCCeeeEEEcCCcCCHHHH
Confidence            99875 677788888888766 4789999999999999999999999999988765556678899999999999999999


Q ss_pred             HHHH-hcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEE
Q 008535          329 EQVA-NFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEV  407 (562)
Q Consensus       329 ~~~~-~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel  407 (562)
                      +.++ .++.++++.||+||+++.++...........  ..........+|.|.++. .++++|.+++++++.+  +.|||
T Consensus       916 ~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~--~~~~~~~~~~vG~p~~~~-~v~i~d~~~~~~~~~g--~~Gel  990 (1146)
T PRK08633        916 DAFEEKFGIRILEGYGATETSPVASVNLPDVLAADF--KRQTGSKEGSVGMPLPGV-AVRIVDPETFEELPPG--EDGLI  990 (1146)
T ss_pred             HHHHHHhCCCeecccccccCcceEEEecCccccccc--ccccCCCCCCccccCCCC-EEEEEcCCCCccCCCC--CceEE
Confidence            9998 5699999999999998766543211110000  001112345788888887 8899988788888776  67999


Q ss_pred             EEcchhhhhhhcCCchhhHhhhcc----ceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCC--Cce
Q 008535          408 MFRANTVMLGYFKNPKATEEAFRN----GWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNP--KVL  481 (562)
Q Consensus       408 ~v~~~~~~~gy~~~~~~~~~~~~~----g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~--~v~  481 (562)
                      +++|+.++.||+++++.+.+.|.+    |||+|||+|++|+||++++.||.||+||++|.+|+|.+||++|.+++  .+.
T Consensus       991 ~v~g~~~~~gY~~~~~~t~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~~~~~ 1070 (1146)
T PRK08633        991 LIGGPQVMKGYLGDPEKTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLGAVEEELAKALGGEEV 1070 (1146)
T ss_pred             EEcCCCccccccCCccchHHHhhcCCCCCeEECCCEEEEcCCceEEEEecccchhhhCcEEECHHHHHHHHHhccCCCCc
Confidence            999999999999999999998877    99999999999999999999999999999999999999999999998  567


Q ss_pred             eEEEEeeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhc-cCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhh
Q 008535          482 EAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGD-ELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNAT  556 (562)
Q Consensus       482 ~~~v~~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~-~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~  556 (562)
                      +++|++.+++..++.++++++..   ..+.+++++++++ .++.+++|..+++++ +|+|++||++|++|+++..+.
T Consensus      1071 ~~~v~~~~~~~~g~~~~~~v~~~---~~~~~~l~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKi~r~~L~~~~~~~ 1144 (1146)
T PRK08633       1071 VFAVTAVPDEKKGEKLVVLHTCG---AEDVEELKRAIKESGLPNLWKPSRYFKVEALPLLGSGKLDLKGLKELALAL 1144 (1146)
T ss_pred             eEEEEeccCCCCCcEEEEEEecC---ccCHHHHHHHHHhcCCCcccCCcEEEEecCcCCCCCCCCcHHHHHHHHHHh
Confidence            89999999999999999988852   3467889998875 699999999988655 999999999999999986654

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=100.00  E-value=1.8e-63  Score=518.72  Aligned_cols=487  Identities=18%  Similarity=0.237  Sum_probs=401.0

Q ss_pred             ChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEEec
Q 008535           21 TPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSAL  100 (562)
Q Consensus        21 ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l  100 (562)
                      ++.+.|.+.++.+|+++|+.+.+.++||+||.+++.++|+.|.+.|+++||+|+++++|+.+++++++||+++|++++|+
T Consensus         1 ~~~~~l~~~a~~~p~~~a~~~~~~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v~~   80 (502)
T TIGR01734         1 KLIEAIQAFAETYPQTIAYRYQGQELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPV   80 (502)
T ss_pred             CHHHHHHHHHHHCCCceEEEcCCcEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCEEeCC
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCchhhh
Q 008535          101 NTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDL  180 (562)
Q Consensus       101 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (562)
                      ++.++.+++.++++..+++.++++.........             .. .+.+..                     ....
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~-------------~~-~~~~~~---------------------~~~~  125 (502)
T TIGR01734        81 DTSIPSERIEMIIEAAGPELVIHTAELSIDAVG-------------TQ-IITLSA---------------------LEQA  125 (502)
T ss_pred             CCcChHHHHHHHHHhcCCCEEEecccccccccC-------------Cc-eEEchH---------------------hhhh
Confidence            999999999999999999999998764322110             00 111100                     0000


Q ss_pred             hhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHHHHHhH
Q 008535          181 LEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAMA  260 (562)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~~~~~~  260 (562)
                      ..... ......+..++++++++|||||||.||+|.++|+++.....+....+++..+++++...|++|..++..++.++
T Consensus       126 ~~~~~-~~~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l  204 (502)
T TIGR01734       126 ETSGG-PVSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAPFSFDLSVMDLYPCL  204 (502)
T ss_pred             hhhcC-CccccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhCCCCCCceEEeecCceechhHHHHHHHH
Confidence            10110 01111223567899999999999999999999999998888888888899999999999999999999899999


Q ss_pred             hhceEEEEecc---CCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHH-hc-C
Q 008535          261 AVGGINVCIRT---VSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVA-NF-G  335 (562)
Q Consensus       261 ~~g~~~v~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~-~~-~  335 (562)
                      ..|+++++.+.   .++..+++.+.+++++.+.++|.+++.++.........+++++.++++|++++++..+.+. .+ +
T Consensus       205 ~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~  284 (502)
T TIGR01734       205 ASGGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFNQENYPHLTHFLFCGEELPVKTAKALLERFPK  284 (502)
T ss_pred             HCCCEEEEcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhccccccccCCcccEEEEcCCcCCHHHHHHHHHHCCC
Confidence            99999998764   5889999999999999999999999887765544556688999999999999999999987 44 7


Q ss_pred             CeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhhh
Q 008535          336 FNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVM  415 (562)
Q Consensus       336 ~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~  415 (562)
                      .++++.||+||+++.+........       .........+|.+.++. .++|.+. ++.+++.+  +.|||+++|+.++
T Consensus       285 ~~~~~~yG~tE~~~~~~~~~~~~~-------~~~~~~~~~vg~~~~~~-~~~i~~~-~~~~~~~g--~~Gel~v~g~~~~  353 (502)
T TIGR01734       285 ATIYNTYGPTEATVAVTSVKITQE-------ILDQYPRLPIGFAKPDM-NLFIMDE-EGEPLPEG--EKGEIVIVGPSVS  353 (502)
T ss_pred             cEEEeCccCCcceEEEEEEEcccc-------ccccCCccccccccCCC-EEEEECC-CCCCCCCC--CeeEEEEcccccc
Confidence            899999999998754443221110       00111223567777766 7888876 46677665  6799999999999


Q ss_pred             hhhcCCchhhHhhhc----cceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeee-C
Q 008535          416 LGYFKNPKATEEAFR----NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKV-D  490 (562)
Q Consensus       416 ~gy~~~~~~~~~~~~----~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~-~  490 (562)
                      .||+++++.+...|.    .+||+|||+|++|++ ++++.||.+|+|+.+|++|+|.+||+.+.++|.|.++++++.. .
T Consensus       354 ~gy~~~~~~~~~~~~~~~~~~~~~TGDlg~~~~~-~l~i~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~  432 (502)
T TIGR01734       354 KGYLNNPEKTAEAFFSHEGQPAYRTGDAGTITDG-QLFYQGRLDFQIKLHGYRIELEDIEFNLRQSSYIESAVVVPKYNK  432 (502)
T ss_pred             ccccCCcccchHhheeCCCcEEEECCCEEEEECC-EEEEeccccCeEEECcEEeCHHHHHHHHHcCCCccEEEEEEEEcC
Confidence            999999998887763    359999999999976 9999999999999999999999999999999999999999866 4


Q ss_pred             CCCCceeEEEEEeCCCCCCC----HHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhh
Q 008535          491 DQLKEVPVAFVKLKEGREAS----PEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNA  555 (562)
Q Consensus       491 ~~~~~~~v~~v~~~~~~~~~----~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~  555 (562)
                      ...++.+++++++.......    .+++++.+++.++++.+|+.+++++ ||+|++||++|++|++++.+
T Consensus       433 ~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~~~~v~~lP~t~~gKv~r~~l~~~~~~  502 (502)
T TIGR01734       433 DHKVEYLIAAIVPETEDFEKEFQLTKAIKKELKKSLPAYMIPRKFIYRDQLPLTANGKIDRKALAEEVNG  502 (502)
T ss_pred             CCCceEEEEEEEecccccccchhhHHHHHHHHhhhChhhcCCcEEEEccccCCCCCCcccHHHHHHhhcC
Confidence            44567888888876543222    2678999999999999999988665 99999999999999998753

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=100.00  E-value=1.1e-63  Score=575.30  Aligned_cols=489  Identities=19%  Similarity=0.174  Sum_probs=406.5

Q ss_pred             CCCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceE
Q 008535           18 VPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVL   97 (562)
Q Consensus        18 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~   97 (562)
                      +..++.++|+++++.+|+++|+.+.+.++||+||.+++.++|+.|.+.|+++||+|+++++++++++++++||+++|+++
T Consensus       456 ~~~~l~~~~~~~~~~~p~~~Al~~~~~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la~~~~G~~~  535 (1296)
T PRK10252        456 PETTLSALVAQQAAKTPDAPALADARYQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAW  535 (1296)
T ss_pred             CcCCHHHHHHHHHHhCCCCeEEEcCCCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCch
Q 008535           98 SALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDY  177 (562)
Q Consensus        98 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (562)
                      +|++|.++.+++..+++.+++++++++......+...    .       .........                      
T Consensus       536 vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~----~-------~~~~~~~~~----------------------  582 (1296)
T PRK10252        536 LPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADV----P-------DLTSLCYNA----------------------  582 (1296)
T ss_pred             EecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccC----C-------Cceeeeccc----------------------
Confidence            9999999999999999999999999987654332110    0       000000000                      


Q ss_pred             hhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHHHH
Q 008535          178 NDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTW  257 (562)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~~~  257 (562)
                        .....  .........++++++++|||||||.||||+++|+++.....+....+++.++|+++...|++|..++...+
T Consensus       583 --~~~~~--~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~  658 (1296)
T PRK10252        583 --PLAPQ--GAAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTADDVVLQKTPCSFDVSVWEFF  658 (1296)
T ss_pred             --ccccc--cCCCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEeCCcchhhhHHHHH
Confidence              00000  00011123567999999999999999999999999999999998999999999999999999999998899


Q ss_pred             HhHhhceEEEEec---cCCHHHHHHHHHhcCeEEEEcchHHHHHHHhcccccc--ccccceEEEEEeCCCChHHHHHHHH
Q 008535          258 AMAAVGGINVCIR---TVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQ--NQLQRKVIIVIAGVLPTIEVLEQVA  332 (562)
Q Consensus       258 ~~~~~g~~~v~~~---~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~--~~l~~l~~i~~~g~~l~~~~~~~~~  332 (562)
                      .++..|+++++.+   ..++..+.+.++++++|++.++|+++..++.......  ..++++|.+++||+++++++.+.|.
T Consensus       659 ~~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~  738 (1296)
T PRK10252        659 WPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGARQSCASLRQVFCSGEALPADLCREWQ  738 (1296)
T ss_pred             HHHhCCCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhccccccccCCCccEEEEecCCCCHHHHHHHH
Confidence            9999999999875   3689999999999999999999999999987643322  3468899999999999999999998


Q ss_pred             h-cCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcc
Q 008535          333 N-FGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRA  411 (562)
Q Consensus       333 ~-~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~  411 (562)
                      + ++.++++.||+||++..++..........     ........+|.|.++. .+.|++. .+++++.|  +.|||+|+|
T Consensus       739 ~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~-----~~~~~~~~iG~p~~~~-~~~i~d~-~~~~~~~g--~~Gel~i~g  809 (1296)
T PRK10252        739 QLTGAPLHNLYGPTEAAVDVSWYPAFGEELA-----AVRGSSVPIGYPVWNT-GLRILDA-RMRPVPPG--VAGDLYLTG  809 (1296)
T ss_pred             hcCCCEEEeCCCcchhhheeeeeeccccccc-----ccCCCCCCcccccCCC-EEEEECC-CCCCCCCC--CceEEEecc
Confidence            5 58899999999999866554332211100     0011234678777776 7788875 67777776  779999999


Q ss_pred             hhhhhhhcCCchhhHhhhc-------cceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEE
Q 008535          412 NTVMLGYFKNPKATEEAFR-------NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAA  484 (562)
Q Consensus       412 ~~~~~gy~~~~~~~~~~~~-------~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~  484 (562)
                      +.++.||+++++.|.+.|.       ++||+|||+|++++||.++++||.||+||++|.+|+|.+||++|.++|+|.+++
T Consensus       810 ~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~~G~l~~~GR~d~~ik~~G~ri~~~eIE~~l~~~~~v~~a~  889 (1296)
T PRK10252        810 IQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDDGAVEYLGRSDDQLKIRGQRIELGEIDRAMQALPDVEQAV  889 (1296)
T ss_pred             cccchhhCCCcccchhhcccCCCCCCCEEEecCceEEEcCCCcEEEecccCCeEEEeeEEecHHHHHHHHHhCccccceE
Confidence            9999999999999998883       349999999999999999999999999999999999999999999999999998


Q ss_pred             EEeee----CCCCC--ceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEee-cccCCCCCcchHHHHhhh
Q 008535          485 VVGKV----DDQLK--EVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFE-DIPVNSTGKVQKFVLRGK  552 (562)
Q Consensus       485 v~~~~----~~~~~--~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~-~lP~t~~GKv~r~~l~~~  552 (562)
                      |+...    +...+  ..++++++...+...+.+++++++++++|.|++|..+..+ +||+|++||++|++|++.
T Consensus       890 v~~~~~~~~~~~~~~~~~lva~v~~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~~GKidr~~L~~~  964 (1296)
T PRK10252        890 THACVINQAAATGGDARQLVGYLVSQSGLPLDTSALQAQLRERLPPHMVPVVLLQLDQLPLSANGKLDRKALPLP  964 (1296)
T ss_pred             EEEEeccccccCCCCccEEEEEEEcCCCCCCCHHHHHHHHHhhCchhcCCcEEEEecCCCCCCCcChhHHhcCCC
Confidence            77542    11112  3789999987665567889999999999999999988755 599999999999999764

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=100.00  E-value=4.3e-63  Score=522.01  Aligned_cols=510  Identities=23%  Similarity=0.313  Sum_probs=404.3

Q ss_pred             CChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEE
Q 008535           20 LTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALA-QLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLS   98 (562)
Q Consensus        20 ~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~-~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v   98 (562)
                      .++.++|+++++.+|+++|+++.++++||+||.+++.++|+.|. +.|+++||+|+++++|+++++++++||+++|++++
T Consensus        25 ~~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v  104 (560)
T PRK08751         25 RTVAEVFATSVAKFADRPAYHSFGKTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVV  104 (560)
T ss_pred             CcHHHHHHHHHHhCCCCceEEECCceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEEe
Confidence            58999999999999999999999999999999999999999997 68999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCC-CCc-----------ccc
Q 008535           99 ALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQ-PST-----------CSV  166 (562)
Q Consensus        99 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----------~~~  166 (562)
                      |++|.++.+++.++++.++++++++++.....+........       ...++......... +..           ...
T Consensus       105 ~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (560)
T PRK08751        105 NVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTP-------VKQVITTGLGDMLGFPKAALVNFVVKYVKKLV  177 (560)
T ss_pred             ccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCCC-------ccEEEEechhhhcccccchhhhhhhhhhhccc
Confidence            99999999999999999999999999877665554433211       11111111000000 000           000


Q ss_pred             cCCCCCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcC----CCCC-Cee
Q 008535          167 ANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCD----VRDM-PVF  241 (562)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~----~~~~-~~~  241 (562)
                      ......+...+.+................++++++++|||||||.||+|.++|.++..+.......+.    +..+ +.+
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~  257 (560)
T PRK08751        178 PEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVV  257 (560)
T ss_pred             cccCCCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccccCCCCceE
Confidence            00001112233333332221111122345689999999999999999999999999877766554443    3333 567


Q ss_pred             eeecccccchhhHH-HHHhHhhceEEEEec-cCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEe
Q 008535          242 LWTLDMFRCNGWCC-TWAMAAVGGINVCIR-TVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIA  319 (562)
Q Consensus       242 l~~~pl~~~~gl~~-~~~~~~~g~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~  319 (562)
                      +...|++|.+++.. .+..+..|++.++.. ..++..+++.++++++|++.++|.++..+.+.......+++++|.+++|
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~v~~g  337 (560)
T PRK08751        258 ITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQIDFSSLKMTLGG  337 (560)
T ss_pred             EEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcCcCCcchhhheeeeeC
Confidence            78899999998764 455566677766554 5789999999999999999999999999988765555668899999999


Q ss_pred             CCCChHHHHHHHHh-cCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCccccc
Q 008535          320 GVLPTIEVLEQVAN-FGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVP  398 (562)
Q Consensus       320 g~~l~~~~~~~~~~-~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~  398 (562)
                      |+++++++.+.|++ ++..+++.||+||+++.++.+....           ......+|.+.++. .+++.+. ++..++
T Consensus       338 G~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~-----------~~~~~~vG~~~~~~-~v~i~d~-~~~~~~  404 (560)
T PRK08751        338 GMAVQRSVAERWKQVTGLTLVEAYGLTETSPAACINPLTL-----------KEYNGSIGLPIPST-DACIKDD-AGTVLA  404 (560)
T ss_pred             CCCCCHHHHHHHHHHhCCeEEEeeccccCCCceecccccc-----------cccCCCcCccCCCc-eEEEECC-CCCCCC
Confidence            99999999999884 5889999999999987654432110           11123567777766 7888875 667776


Q ss_pred             CCCCceeEEEEcchhhhhhhcCCchhhHhhhc-cceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcC
Q 008535          399 HDGKTLGEVMFRANTVMLGYFKNPKATEEAFR-NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSN  477 (562)
Q Consensus       399 ~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~  477 (562)
                      .+  +.|||+++|+.++.||+++++.+...|. +|||+|||+|+++++|.+++.||.+|+|+++|.+++|.+||+.|..+
T Consensus       405 ~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~i~GR~~d~i~~~G~~v~p~eiE~~l~~~  482 (560)
T PRK08751        405 IG--EIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMM  482 (560)
T ss_pred             CC--CceEEEEecCccchhhcCChhhhhhccccCCCccccceEEEcCCceEEEEeechhheeECCEEEcHHHHHHHHHhC
Confidence            65  6799999999999999999999888874 79999999999999999999999999999999999999999999999


Q ss_pred             CCceeEEEEeeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhh
Q 008535          478 PKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGK  552 (562)
Q Consensus       478 ~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~  552 (562)
                      ++|.+++|++.++...++.++++++.. ....+.++++++++++++.+++|..+.+++ ||+|++||++|++|++.
T Consensus       483 ~~v~~~~v~~~~~~~~ge~~~~~v~~~-~~~~~~~~l~~~~~~~l~~~~~P~~v~~v~~lP~t~~gKv~r~~L~~~  557 (560)
T PRK08751        483 PGVLEVAAVGVPDEKSGEIVKVVIVKK-DPALTAEDVKAHARANLTGYKQPRIIEFRKELPKTNVGKILRRELRDA  557 (560)
T ss_pred             cCeeeeEEEecCCCCCCceEEEEEEcC-CCCCCHHHHHHHHHHhhhhccCCeEEEEhhhCCCCccccccHHHHHHh
Confidence            999999999999888888887777754 344677899999999999999999988665 99999999999999876

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=100.00  E-value=1.9e-62  Score=511.07  Aligned_cols=493  Identities=26%  Similarity=0.352  Sum_probs=403.6

Q ss_pred             HHHHHHH-HHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEEecC
Q 008535           23 IDFLERA-AHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALN  101 (562)
Q Consensus        23 ~~~l~~~-a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~  101 (562)
                      .+++++. ++.+|+++|+++.+..+||.||.++++++|++|.+.|+++|++|+++++|+++++++++||+++|++++|++
T Consensus         7 ~~~~~~~~~~~~p~~~a~~~~~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~a~~~~G~~~v~l~   86 (508)
T TIGR02262         7 EDLLDRNVVEGRGGKTAFIDDISSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALN   86 (508)
T ss_pred             HHHHHHHHhcccCCceEEEeCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEeecc
Confidence            4666665 677999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCchhhhh
Q 008535          102 TRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLL  181 (562)
Q Consensus       102 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (562)
                      +.++.+++.++++.+++++++++....+.+.+....++.      ...++..+...              .....+.++.
T Consensus        87 ~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~--------------~~~~~~~~~~  146 (508)
T TIGR02262        87 TLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPH------LEHRVVVGRPE--------------AGEVQLAELL  146 (508)
T ss_pred             CCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHhcCCC------ccEEEEeCCCC--------------cccccHHHHh
Confidence            999999999999999999999998876666554332221      12222221110              1112333333


Q ss_pred             hcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHH-HHhhcCCCCCCeeeeecccccchhhHH-HHHh
Q 008535          182 EMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLA-QISRCDVRDMPVFLWTLDMFRCNGWCC-TWAM  259 (562)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~-~~~~~~~~~~~~~l~~~pl~~~~gl~~-~~~~  259 (562)
                      ....... ......++++++++|||||||.||+|.++|+++...... ....+++..+|++++.+|++|.+++.. .+.+
T Consensus       147 ~~~~~~~-~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~  225 (508)
T TIGR02262       147 ATESEQF-KPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNALTFP  225 (508)
T ss_pred             hcCCCcc-CCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCCCCCCEEEEcCchHHHHHHHHHHHHH
Confidence            2221111 112234679999999999999999999999998877655 445668899999999999999999864 5556


Q ss_pred             HhhceEEEEecc-CCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHH-hcCCe
Q 008535          260 AAVGGINVCIRT-VSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVA-NFGFN  337 (562)
Q Consensus       260 ~~~g~~~v~~~~-~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~-~~~~~  337 (562)
                      +..|++.++.+. +++..+++.+++++++.+.++|.++..++...........+++.++++|+++++++.+.|. .++.+
T Consensus       226 l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~  305 (508)
T TIGR02262       226 MSVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLPAEDQVRLRLCTSAGEALPAEVGQRWQARFGVD  305 (508)
T ss_pred             HHcCceEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCccccccccccceeEEEcCCCCCHHHHHHHHHHhCCc
Confidence            778888877653 6899999999999999999999999988766543334567899999999999999999988 56899


Q ss_pred             eeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhhhhh
Q 008535          338 IRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLG  417 (562)
Q Consensus       338 l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~g  417 (562)
                      +++.||+||++++++.+...            ......+|.+.++. .+++++ +++.+++.+  +.|||+++|+.++.|
T Consensus       306 v~~~YG~tE~~~~~~~~~~~------------~~~~~~~G~~~~g~-~v~i~d-~~~~~~~~g--~~Gel~i~~~~~~~g  369 (508)
T TIGR02262       306 IVDGIGSTEMLHIFLSNLPG------------DVRYGTSGKPVPGY-RLRLVG-DGGQDVAAG--EPGELLISGPSSATM  369 (508)
T ss_pred             hhhCccccccCceeecCCcc------------CCCCCCcCCCCCCc-EEEEEC-CCCCCCCCC--CeeEEEEecCccccc
Confidence            99999999998755432110            01123567777665 788888 477777765  779999999999999


Q ss_pred             hcCCchhhHhhhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCCCCCcee
Q 008535          418 YFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVP  497 (562)
Q Consensus       418 y~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~  497 (562)
                      |+++++.+...|.++||+|||+++++++|.+++.||.+|+|+.+|.+++|.+||+.|.++++|.++++++.++...++.+
T Consensus       370 Y~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~gR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~  449 (508)
T TIGR02262       370 YWNNRAKTRDTFQGEWTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKP  449 (508)
T ss_pred             cCCCHHHhHhhhhcCceeccceEEEcCCccEEEeccccceeeeCCEEECHHHHHHHHHhCCCeeEEEEEeccccCCCcee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998887777888


Q ss_pred             EEEEEeCCCCC---CCHHHHHHHHhccCCCCCCCcEEEee-cccCCCCCcchHHHHhhh
Q 008535          498 VAFVKLKEGRE---ASPEELVTFCGDELPSCMVPRAIFFE-DIPVNSTGKVQKFVLRGK  552 (562)
Q Consensus       498 v~~v~~~~~~~---~~~~~l~~~~~~~l~~~~~p~~i~~~-~lP~t~~GKv~r~~l~~~  552 (562)
                      .+++++.++..   ...++++++++++++++++|..+.+. +||+|++||++|+.|+++
T Consensus       450 ~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p~~i~~~~~iP~t~~gKi~r~~l~~~  508 (508)
T TIGR02262       450 KAFIVLRPGQDIDTALETELKEHVKDRLAPYKYPRWIVFVDDLPKTATGKIQRFKLREG  508 (508)
T ss_pred             EEEEEeCCCCccccccHHHHHHHHHHhcccCCCCceEEEecCCCCCCCCcEehhhccCC
Confidence            88888766532   34678999999999999999988754 599999999999998763

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK07798 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.1e-62  Score=510.65  Aligned_cols=504  Identities=23%  Similarity=0.282  Sum_probs=403.1

Q ss_pred             CCCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceE
Q 008535           18 VPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVL   97 (562)
Q Consensus        18 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~   97 (562)
                      +.+|+.++|++.++++|+++|+.+.++.+||.||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus         1 ~~~~l~~~~~~~a~~~p~~~a~~~~~~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~~~G~~~   80 (533)
T PRK07798          1 MAWNIADLFEAVADAVPDRVALVCGDRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVP   80 (533)
T ss_pred             CcccHHHHHHHHHHhCCCceEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCeEE
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCch
Q 008535           98 SALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDY  177 (562)
Q Consensus        98 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (562)
                      +++++.++.+++.++++++++++++++....+.+.+.......      ...++.++....         .....+..++
T Consensus        81 v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~---------~~~~~~~~~~  145 (533)
T PRK07798         81 VNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPK------LRTLVVVEDGSG---------NDLLPGAVDY  145 (533)
T ss_pred             EecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhccCCC------ccEEEEecCCcc---------cccCCccccH
Confidence            9999999999999999999999999998766665544322110      223333332211         0111123455


Q ss_pred             hhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhh---------cCC------CCCCeee
Q 008535          178 NDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISR---------CDV------RDMPVFL  242 (562)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~---------~~~------~~~~~~l  242 (562)
                      .++..........  .....+.++++|||||||.||+|+++|+++..+.......         ..+      ..+++++
T Consensus       146 ~~~~~~~~~~~~~--~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (533)
T PRK07798        146 EDALAAGSPERDF--GERSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRF  223 (533)
T ss_pred             HHHHhccCCcCCC--CCCCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEE
Confidence            5555433221111  1223456799999999999999999999987654432221         111      5668899


Q ss_pred             eecccccchhhHHHHHhHhhceEEEEec--cCCHHHHHHHHHhcCeEEEEcchHHHH-HHHhccc-cccccccceEEEEE
Q 008535          243 WTLDMFRCNGWCCTWAMAAVGGINVCIR--TVSAKIIFDSILIHKVTHLCGQPRILN-MIANASA-SDQNQLQRKVIIVI  318 (562)
Q Consensus       243 ~~~pl~~~~gl~~~~~~~~~g~~~v~~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~-~l~~~~~-~~~~~l~~l~~i~~  318 (562)
                      ...|++|.+++...+.++..|+++++.+  .+++..+++.+++++++.+.++|..+. .+..... .....+++++.+++
T Consensus       224 ~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~i~~  303 (533)
T PRK07798        224 PAPPLMHGAGQWAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEARGPYDLSSLFAIAS  303 (533)
T ss_pred             EecchhhhhhHHHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhcccccCCCCceEEEEE
Confidence            9999999999998999999999999998  789999999999999999999987654 3333322 23456789999999


Q ss_pred             eCCCChHHHHHHHHh-c-CCeeeccccCccccCcccccccCCCCCCCcCCccccccccccC--ccccccccceecccCCc
Q 008535          319 AGVLPTIEVLEQVAN-F-GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREG--LNNLLIQGVDVKQQNTM  394 (562)
Q Consensus       319 ~g~~l~~~~~~~~~~-~-~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~i~~~~~~  394 (562)
                      ||+++++++.+.+++ + +..+++.||+||++..........              ....|  .+.++. .+++.+. ++
T Consensus       304 gG~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~--------------~~~~g~~~~~~~~-~~~i~~~-~~  367 (533)
T PRK07798        304 GGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGTVAKG--------------AVHTGGPRFTIGP-RTVVLDE-DG  367 (533)
T ss_pred             CCCCCCHHHHHHHHHHcCCCeEEeeecccccccccccCCCCC--------------CccCCCCccCCCc-eEEEECC-CC
Confidence            999999999999984 5 788999999999865444321100              01112  333333 7777776 55


Q ss_pred             ccccCCCCceeEEEEcchhhhhhhcCCchhhHhhhc----cceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHH
Q 008535          395 KSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFR----NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEV  470 (562)
Q Consensus       395 ~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~----~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~i  470 (562)
                      .+++.+....|+++ .++.++.||++++..+.+.|.    ++||+|||++++|++|.+++.||.+|+|+.+|.+|+|.+|
T Consensus       368 ~~~~~g~~~~g~l~-~~~~~~~gy~~~~~~t~~~f~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~~~i~~~G~~v~~~eI  446 (533)
T PRK07798        368 NPVEPGSGEIGWIA-RRGHIPLGYYKDPEKTAETFPTIDGVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEEV  446 (533)
T ss_pred             CCCCCCCCCeeEEE-eecCccccccCChhhhHHhhccCCCCceEEcCcEEEEcCCCcEEEEccccceEecCCEEeCHHHH
Confidence            66766643336665 556789999999999988884    3599999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEee-cccCCCCCcchHHHH
Q 008535          471 EAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFE-DIPVNSTGKVQKFVL  549 (562)
Q Consensus       471 E~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~-~lP~t~~GKv~r~~l  549 (562)
                      |+.+.+++.|.+++|++.++...++.+.+++++.++...+.+++.++++++++.|++|..+++. +||+|++||++|+.|
T Consensus       447 E~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~~~~iP~t~~GK~~~~~~  526 (533)
T PRK07798        447 EEALKAHPDVADALVVGVPDERWGQEVVAVVQLREGARPDLAELRAHCRSSLAGYKVPRAIWFVDEVQRSPAGKADYRWA  526 (533)
T ss_pred             HHHHHhCccceeEEEEeccCcccCceEEEEEEECCCCCCCHHHHHHHHhhhcccCCCCeEEEEcccCCCCCcchhhHHHH
Confidence            9999999999999999998888888899999988776678899999999999999999988765 499999999999999


Q ss_pred             hhhhhh
Q 008535          550 RGKVNA  555 (562)
Q Consensus       550 ~~~~~~  555 (562)
                      +++.++
T Consensus       527 ~~~~~~  532 (533)
T PRK07798        527 KEQAAE  532 (533)
T ss_pred             hhhhcc
Confidence            998775

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=6.4e-63  Score=529.38  Aligned_cols=506  Identities=19%  Similarity=0.238  Sum_probs=378.4

Q ss_pred             CCChHHHHHHHHHHcCCceEEEEC---------------------------CeeccHHHHHHHHHHHHHHHHHcCCCCCC
Q 008535           19 PLTPIDFLERAAHVYGDATSIIYG---------------------------TVRFSWRQTHQICLKLASALAQLKISRGD   71 (562)
Q Consensus        19 ~~ti~~~l~~~a~~~p~~~a~~~~---------------------------~~~~Ty~el~~~~~~~a~~L~~~gv~~gd   71 (562)
                      ..|+.++|.++++.+|+++|+.+.                           .+.+||+||.++++++|..|.+.|+++||
T Consensus        68 ~~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~Gv~~gd  147 (700)
T PTZ00216         68 GPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAELGLTKGS  147 (700)
T ss_pred             CCCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            458999999999999999999872                           36799999999999999999999999999


Q ss_pred             EEEEEcCCcHHHHHHHHHhhhccceEEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCcee
Q 008535           72 IVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLV  151 (562)
Q Consensus        72 ~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (562)
                      +|+|+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++......+..........     ...++
T Consensus       148 ~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~~-----~~~ii  222 (700)
T PTZ00216        148 NVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGGMP-----NTTII  222 (700)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHHHHHHHHhhhhccCC-----ceEEE
Confidence            9999999999999999999999999999999999999999999999999999876554443322211100     11233


Q ss_pred             ccCCCCCCCCCcccccCCCCCCCCchhhhhhccc---CccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHH
Q 008535          152 TIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGK---ADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLA  228 (562)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~  228 (562)
                      .+++....       .........++.++...+.   .......+..++|+++++|||||||.||||++||+++.+....
T Consensus       223 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~  295 (700)
T PTZ00216        223 YLDSLPAS-------VDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILA  295 (700)
T ss_pred             EECCCccc-------cccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHH
Confidence            33221100       0000112345666655431   1111122346789999999999999999999999999887766


Q ss_pred             HHhhc-----CCCCCCeeeeecccccchhhHHHHHhHhhceEEEEeccCCHHHHHH-------HHHhcCeEEEEcchHHH
Q 008535          229 QISRC-----DVRDMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCIRTVSAKIIFD-------SILIHKVTHLCGQPRIL  296 (562)
Q Consensus       229 ~~~~~-----~~~~~~~~l~~~pl~~~~gl~~~~~~~~~g~~~v~~~~~~~~~~~~-------~i~~~~~t~l~~~p~~~  296 (562)
                      ....+     .+.+.|++++.+|++|.+++......+..|+++++.   ++..+.+       .+++++||++.++|.++
T Consensus       296 ~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~~---~~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~  372 (700)
T PTZ00216        296 LEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGFG---SPRTLTDTFARPHGDLTEFRPVFLIGVPRIF  372 (700)
T ss_pred             HHhhcccccCCCCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEEEC---CHHHhhhhhccccchHHHcCCcEEEechHHH
Confidence            55443     246789999999999999987655556666655442   4555554       68899999999999999


Q ss_pred             HHHHhccccc-------------------------c---------------c-cccceEEEEEeCCCChHHHHHHHHh-c
Q 008535          297 NMIANASASD-------------------------Q---------------N-QLQRKVIIVIAGVLPTIEVLEQVAN-F  334 (562)
Q Consensus       297 ~~l~~~~~~~-------------------------~---------------~-~l~~l~~i~~~g~~l~~~~~~~~~~-~  334 (562)
                      +.+.+.....                         .               . ..+++|.+++||++++++..+.++. +
T Consensus       373 ~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~  452 (700)
T PTZ00216        373 DTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVF  452 (700)
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence            9886532100                         0               0 0157999999999999999888874 4


Q ss_pred             CCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhh
Q 008535          335 GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTV  414 (562)
Q Consensus       335 ~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~  414 (562)
                      + ++++.||+||+++.++....            .......+|.|.++. .++|++.+.... ....++.|||+|+|+++
T Consensus       453 ~-~l~~~YG~TEt~~~~~~~~~------------~~~~~~svG~p~~g~-evkI~d~~~~~~-~~~~~~~GEL~vrG~~v  517 (700)
T PTZ00216        453 G-MVIQGWGLTETVCCGGIQRT------------GDLEPNAVGQLLKGV-EMKLLDTEEYKH-TDTPEPRGEILLRGPFL  517 (700)
T ss_pred             h-hHhhccCcccccccccccCC------------CCCCCCCcCCcCCCe-EEEEeechhhcc-CCCCCCCceEEEcCCcc
Confidence            6 99999999999765543211            111235678888887 888887643211 11112459999999999


Q ss_pred             hhhhcCCchhhHhhh-ccceeeeCceeEEcCCCcEEEeccccceee-cCCeEechHHHHHHHhcCCCceeE--EEEeeeC
Q 008535          415 MLGYFKNPKATEEAF-RNGWYHTGDLAVRNPDGYVQMKDRRKDIII-SGAEIISSLEVEAVLLSNPKVLEA--AVVGKVD  490 (562)
Q Consensus       415 ~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~-~~G~~v~~~~iE~~l~~~~~v~~~--~v~~~~~  490 (562)
                      +.|||++|+.|.+.| .+|||+|||+|++|+||.++++||.||+|| .+|++|+|.+||+++.++|.|.++  +|+..++
T Consensus       518 ~~GY~~~pe~T~~~f~~dGw~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~p~V~~~~~~v~~~~~  597 (700)
T PTZ00216        518 FKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNELVVPNGVCVLVHPA  597 (700)
T ss_pred             cchhcCChhHhhhhccccCCeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHhcCcCcccceEEEEEecC
Confidence            999999999999999 489999999999999999999999999999 999999999999999999999973  4444332


Q ss_pred             CCCCceeEEEEEeCCCC--------C--CC----------HHHHHHHH-----hccCCCCCCCcEEEeec--c-----cC
Q 008535          491 DQLKEVPVAFVKLKEGR--------E--AS----------PEELVTFC-----GDELPSCMVPRAIFFED--I-----PV  538 (562)
Q Consensus       491 ~~~~~~~v~~v~~~~~~--------~--~~----------~~~l~~~~-----~~~l~~~~~p~~i~~~~--l-----P~  538 (562)
                         ...++++|+++...        .  ..          .+.+.+.+     +..+..+..++.+.+.+  +     -+
T Consensus       598 ---~~~l~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~~~~~~f~~~~g~l  674 (700)
T PTZ00216        598 ---RSYICALVLTDEAKAMAFAKEHGIEGEYPAILKDPEFQKKATESLQETARAAGRKSFEIVRHVRVLSDEWTPENGVL  674 (700)
T ss_pred             ---CceEEEEEecCHHHHHHHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHhcCCCCceeEeEEEEECCCCCCCCCCC
Confidence               24578888865310        0  01          11122222     23577888888888765  2     26


Q ss_pred             CCCCcchHHHHhhhhhhhc
Q 008535          539 NSTGKVQKFVLRGKVNATA  557 (562)
Q Consensus       539 t~~GKv~r~~l~~~~~~~~  557 (562)
                      |+++|++|+.+++.|.+.-
T Consensus       675 T~t~K~~R~~i~~~y~~~i  693 (700)
T PTZ00216        675 TAAMKLKRRVIDERYADLI  693 (700)
T ss_pred             ChhhccchHHHHHHHHHHH
Confidence            9999999999999998764

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=100.00  E-value=3.7e-63  Score=525.76  Aligned_cols=499  Identities=18%  Similarity=0.165  Sum_probs=383.2

Q ss_pred             cccCCCCCChHHHHHHHHHHcCCceEEEECC-----eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHH
Q 008535           13 ASANNVPLTPIDFLERAAHVYGDATSIIYGT-----VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLH   87 (562)
Q Consensus        13 ~~~~~~~~ti~~~l~~~a~~~p~~~a~~~~~-----~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~   87 (562)
                      ..++..+.|+.++|+++++.+|+++|+.+.+     +++||+||.++++++|++|.+.|+++||+|+++++|++++++++
T Consensus        32 ~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~  111 (614)
T PRK08180         32 EPLGDYPRRLTDRLVHWAQEAPDRVFLAERGADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLA  111 (614)
T ss_pred             CCCCCcCccHHHHHHHHHHHCCCCceeeeccCCCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHH
Confidence            4455667799999999999999999998742     68999999999999999999999999999999999999999999


Q ss_pred             HHhhhccceEEecCCCCC-----HHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCC
Q 008535           88 FAVPMAGAVLSALNTRLD-----SATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPS  162 (562)
Q Consensus        88 lA~~~~G~~~v~l~~~~~-----~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (562)
                      +||+++|++++|+++.++     .+++.++++.++++++|++....  ...........     ...++......     
T Consensus       112 lA~~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~--~~~~~~~~~~~-----~~~~i~~~~~~-----  179 (614)
T PRK08180        112 LAAMYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAA--FARALAAVVPA-----DVEVVAVRGAV-----  179 (614)
T ss_pred             HHHHHcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHH--HHHHHhhhccC-----CceEEEecCCC-----
Confidence            999999999999999988     79999999999999999985421  11111111100     11112111100     


Q ss_pred             cccccCCCCCCCCchhhhhhcccCcc--ccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCC--CC
Q 008535          163 TCSVANNFPSGSLDYNDLLEMGKADF--EMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVR--DM  238 (562)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~--~~  238 (562)
                             ...+...+.++........  .......++|+++|+|||||||.||||++||+++..+.......+...  ..
T Consensus       180 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~  252 (614)
T PRK08180        180 -------PGRAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEP  252 (614)
T ss_pred             -------CCcccccHHHHhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccccCCCC
Confidence                   0001234555443321110  111224568999999999999999999999999988877776666653  56


Q ss_pred             CeeeeecccccchhhH-HHHHhHhhceEEEEec-cCCH---HHHHHHHHhcCeEEEEcchHHHHHHHhcccc----cccc
Q 008535          239 PVFLWTLDMFRCNGWC-CTWAMAAVGGINVCIR-TVSA---KIIFDSILIHKVTHLCGQPRILNMIANASAS----DQNQ  309 (562)
Q Consensus       239 ~~~l~~~pl~~~~gl~-~~~~~~~~g~~~v~~~-~~~~---~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~----~~~~  309 (562)
                      +++++.+|++|.+++. .++.++..|+++++.+ .+++   ..+++.++++++|+++++|.++..|++....    ....
T Consensus       253 ~~~l~~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~  332 (614)
T PRK08180        253 PVLVDWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRRRF  332 (614)
T ss_pred             cEEEEecchHHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchhhhhhh
Confidence            8999999999999875 4566778888888765 2443   4678889999999999999999999875322    2235


Q ss_pred             ccceEEEEEeCCCChHHHHHHHHh-----cC--CeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccc
Q 008535          310 LQRKVIIVIAGVLPTIEVLEQVAN-----FG--FNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLL  382 (562)
Q Consensus       310 l~~l~~i~~~g~~l~~~~~~~~~~-----~~--~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  382 (562)
                      ++++|.+++||+++++++.+.+.+     ++  +++++.||+||++++++.....            ......+|.|.++
T Consensus       333 ~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~------------~~~~~svG~p~pg  400 (614)
T PRK08180        333 FSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGMTETAPSATFTTGP------------LSRAGNIGLPAPG  400 (614)
T ss_pred             ccceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeecccccCCceEecccc------------cCCCCcccCccCC
Confidence            789999999999999999988874     23  6799999999998665543211            1123456777666


Q ss_pred             cccceecccCCcccccCCCCceeEEEEcchhhhhhhcCCchhhHhhhc-cceeeeCceeEE----cCCCcEEEeccccce
Q 008535          383 IQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFR-NGWYHTGDLAVR----NPDGYVQMKDRRKDI  457 (562)
Q Consensus       383 ~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TGD~~~~----~~~g~l~~~GR~~d~  457 (562)
                      . .+++++.+          +.|||+++|++++.||+++++.+.+.|. +|||+|||+|++    |++|.+++.||.+|+
T Consensus       401 ~-~v~i~d~~----------~~GEi~vrg~~v~~GY~~~p~~t~~~~~~dgw~~TGDlg~~~~~~d~~g~l~i~GR~~d~  469 (614)
T PRK08180        401 C-EVKLVPVG----------GKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGDAVRFVDPADPERGLMFDGRIAED  469 (614)
T ss_pred             c-EEEEecCC----------CCcEEEEecCccchhhcCChhHhHhhcccCCceeccceEEecCCcCCCCceEEecchhhh
Confidence            6 66666531          3499999999999999999999999884 899999999999    468999999999998


Q ss_pred             ee-cCCeEec--hHHHHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCC---------------CCCHHHHHHHHh
Q 008535          458 II-SGAEIIS--SLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGR---------------EASPEELVTFCG  519 (562)
Q Consensus       458 i~-~~G~~v~--~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~---------------~~~~~~l~~~~~  519 (562)
                      |+ .+|++++  |.++|.++.+||.|.+++|++.+++.    +.++|+++++.               ..+.++++++++
T Consensus       470 i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~g~~~~~----~~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  545 (614)
T PRK08180        470 FKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHDRDE----IGLLVFPNLDACRRLAGLLADASLAEVLAHPAVRAAFR  545 (614)
T ss_pred             EEcCCCcEecchhhhHHHHhhcCchhheEEEEcCCCCc----eEEEEEcCHHHHHHHHhhcccCCHHHHhcCHHHHHHHH
Confidence            88 6798776  78889999999999999999987653    67888876441               124467888887


Q ss_pred             ccCCCCC--------CCcEEEeec-ccCC------CCCcchHHHHhhhhhhhc
Q 008535          520 DELPSCM--------VPRAIFFED-IPVN------STGKVQKFVLRGKVNATA  557 (562)
Q Consensus       520 ~~l~~~~--------~p~~i~~~~-lP~t------~~GKv~r~~l~~~~~~~~  557 (562)
                      +.+..++        +|+++.+.+ +|++      ++||+.|+.+.+.|.+.-
T Consensus       546 ~~l~~~~~~~~~~~~~p~~~~~~~~~p~~~~gk~t~~~~~~R~~~~~~y~~~i  598 (614)
T PRK08180        546 ERLARLNAQATGSSTRVARALLLDEPPSLDAGEITDKGYINQRAVLARRAALV  598 (614)
T ss_pred             HHHHHHHhhccccHhheeEEEEecCCCCCccCccCccccccHHHHHHHhHHHH
Confidence            7776666        898888655 7755      566889999988887754

>PRK07787 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.4e-62  Score=506.75  Aligned_cols=457  Identities=27%  Similarity=0.329  Sum_probs=383.6

Q ss_pred             HHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEEecCCCCCHHH
Q 008535           29 AAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSAT  108 (562)
Q Consensus        29 ~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~  108 (562)
                      .++..++++|+.++++++||+||.++++++|..|.     ++|+|+++++|+++++++++||+++|++++|+++..+.++
T Consensus         9 ~~~~~~~~~a~~~~~~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~   83 (471)
T PRK07787          9 VAAAADIADAVRIGGRVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPVPPDSGVAE   83 (471)
T ss_pred             hhcccCCceEEEeCCcEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCCChHH
Confidence            34557899999999999999999999999999996     4799999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCchhhhhhcccCcc
Q 008535          109 LASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADF  188 (562)
Q Consensus       109 l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (562)
                      +..+++++++++++++.....      ..         .+........                  ..+.          
T Consensus        84 l~~~l~~~~~~~il~~~~~~~------~~---------~~~~~~~~~~------------------~~~~----------  120 (471)
T PRK07787         84 RRHILADSGAQAWLGPAPDDP------AG---------LPHVPVRLHA------------------RSWH----------  120 (471)
T ss_pred             HHHHHHhcCCCEEEecCCccc------cc---------ccceeeeccc------------------cccc----------
Confidence            999999999999999863110      00         0000000000                  0000          


Q ss_pred             ccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHH-HHHhHhhceEEE
Q 008535          189 EMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCC-TWAMAAVGGINV  267 (562)
Q Consensus       189 ~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~-~~~~~~~g~~~v  267 (562)
                       ......++++++++|||||||.||+|.++|+++..........+++..++++++.+|++|.+|+.. .+.++..|++++
T Consensus       121 -~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~  199 (471)
T PRK07787        121 -RYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFV  199 (471)
T ss_pred             -cCCCCCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhcCCCccceeEeccCCeeechhHHHHHHHHhcCCEEE
Confidence             001134679999999999999999999999999988888888888999999999999999999875 667788899998


Q ss_pred             EeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHH-hcCCeeeccccCcc
Q 008535          268 CIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVA-NFGFNIRHAYGMTE  346 (562)
Q Consensus       268 ~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~-~~~~~l~~~YG~tE  346 (562)
                      ..+..++..+++.++ ++++++.++|.++..|++.... ...++++|.++.||++++++..+.|+ .++.++++.||+||
T Consensus       200 ~~~~~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~~-~~~l~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE  277 (471)
T PRK07787        200 HTGRPTPEAYAQALS-EGGTLYFGVPTVWSRIAADPEA-ARALRGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTE  277 (471)
T ss_pred             ecCCCCHHHHHHHHh-hCceEEEcchHHHHHHHhCccc-cccccceeEEEECCCCCCHHHHHHHHHHcCCCeecccCccc
Confidence            888899999999999 9999999999999999875432 24578899999999999999999998 46889999999999


Q ss_pred             ccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhhhhhhcCCchhhH
Q 008535          347 VLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATE  426 (562)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~  426 (562)
                      ++........            .......+|.+.++. .++|++. ++.+++.++++.|||+++|+.++.||+++++.+.
T Consensus       278 ~~~~~~~~~~------------~~~~~~~vG~~~~g~-~~~i~d~-~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~  343 (471)
T PRK07787        278 TLITLSTRAD------------GERRPGWVGLPLAGV-ETRLVDE-DGGPVPHDGETVGELQVRGPTLFDGYLNRPDATA  343 (471)
T ss_pred             cCcceecCCC------------CcccCCcccccCCCc-EEEEECC-CCCCCCCCCCCceEEEEECcccchhhcCChhhch
Confidence            9754332210            111234577777776 8888886 4667764433579999999999999999999998


Q ss_pred             hhhc-cceeeeCceeEEcCCCcEEEeccc-cceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeC
Q 008535          427 EAFR-NGWYHTGDLAVRNPDGYVQMKDRR-KDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLK  504 (562)
Q Consensus       427 ~~~~-~g~~~TGD~~~~~~~g~l~~~GR~-~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~  504 (562)
                      ..|. +|||+|||+|++++||.+++.||. ||+++.+|.+++|.+||+.|..++.|.+++|++.++...++.++++++..
T Consensus       344 ~~~~~~~~~~TGDlg~~~~dg~l~~~GR~~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~  423 (471)
T PRK07787        344 AAFTADGWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVVGA  423 (471)
T ss_pred             hcccCCCceecCceEEEcCCCCEEEeCCCCceeEeeCCEEECHHHHHHHHHhCCCcceEEEEcccccccCeEEEEEEEeC
Confidence            8886 899999999999999999999996 89999999999999999999999999999999999888889999999873


Q ss_pred             CCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhh
Q 008535          505 EGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGK  552 (562)
Q Consensus       505 ~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~  552 (562)
                        ...+.+++.++++++++++++|..+.+++ ||+|++||++|++|++.
T Consensus       424 --~~~~~~~l~~~l~~~l~~~~~P~~i~~~~~iP~~~~GKi~r~~L~~~  470 (471)
T PRK07787        424 --DDVAADELIDFVAQQLSVHKRPREVRFVDALPRNAMGKVLKKQLLSE  470 (471)
T ss_pred             --CCCCHHHHHHHHHhhcccccCCcEEEEeccCCCCCCccccHHHhccC
Confidence              34678899999999999999999887655 99999999999999764

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.5e-61  Score=509.91  Aligned_cols=514  Identities=23%  Similarity=0.340  Sum_probs=405.2

Q ss_pred             CChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEE
Q 008535           20 LTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQ-LKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLS   98 (562)
Q Consensus        20 ~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~-~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v   98 (562)
                      .++.++|+++++.+|+++|+.+.+.++||.||.++++++|.+|.+ .|+++||+|+++++|++++++++|||+++|++++
T Consensus        23 ~~l~~~l~~~a~~~p~~~a~~~~~~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v  102 (560)
T PRK08974         23 QSLVDMFEQAVARYADQPAFINMGEVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRAGMIVV  102 (560)
T ss_pred             ccHHHHHHHHHHhCCCCceEEECCccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEe
Confidence            479999999999999999999999999999999999999999985 8999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcc---c---------c
Q 008535           99 ALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTC---S---------V  166 (562)
Q Consensus        99 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---------~  166 (562)
                      |++|..+.+++.++++.+++++++++.+..+.+........       ...++.............   .         .
T Consensus       103 ~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (560)
T PRK08974        103 NVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKTP-------VKHVILTRMGDQLSTAKGTLVNFVVKYIKRLV  175 (560)
T ss_pred             ccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhhcC-------cceEEEecccccccccccccccchhhhccccc
Confidence            99999999999999999999999998876665554332211       111111000000000000   0         0


Q ss_pred             cCCCCCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhc---CCCCCCeeee
Q 008535          167 ANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRC---DVRDMPVFLW  243 (562)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~---~~~~~~~~l~  243 (562)
                      +........++.+................++++++++|||||||.||+|.++|.++..+.......+   .....+.++.
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~  255 (560)
T PRK08974        176 PKYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVT  255 (560)
T ss_pred             ccccCCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCCCccEEEE
Confidence            0000001112222222111111111123567999999999999999999999999887665443333   2344567888


Q ss_pred             ecccccchhhHH-HHHhHhhceEEEEec-cCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCC
Q 008535          244 TLDMFRCNGWCC-TWAMAAVGGINVCIR-TVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGV  321 (562)
Q Consensus       244 ~~pl~~~~gl~~-~~~~~~~g~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~  321 (562)
                      .+|++|.+++.. .+..+..|++.++.. ..++..+++.+++++++.+.++|.+++.|..........++++|.+++||+
T Consensus       256 ~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg~  335 (560)
T PRK08974        256 ALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELDFSSLKLSVGGGM  335 (560)
T ss_pred             eCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCcccCCccceeEEEecCc
Confidence            999999988654 555666777766653 568889999999999999999999999998876555566789999999999


Q ss_pred             CChHHHHHHHHh-cCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCC
Q 008535          322 LPTIEVLEQVAN-FGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHD  400 (562)
Q Consensus       322 ~l~~~~~~~~~~-~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~  400 (562)
                      ++++.+.+.|++ ++.++++.||+||++..++.+....           ......+|.+.++. .+++++. ++..++.+
T Consensus       336 ~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~-----------~~~~~~~G~~~~~~-~~~i~~~-~~~~~~~g  402 (560)
T PRK08974        336 AVQQAVAERWVKLTGQYLLEGYGLTECSPLVSVNPYDL-----------DYYSGSIGLPVPST-EIKLVDD-DGNEVPPG  402 (560)
T ss_pred             cCCHHHHHHHHHHhCCcEEeeecccccCceeeccCCCC-----------cccCCccccCcCCC-EEEEECC-CCCCCCCC
Confidence            999999999884 6899999999999987665543211           11123567776666 7788775 56777666


Q ss_pred             CCceeEEEEcchhhhhhhcCCchhhHhhhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCc
Q 008535          401 GKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKV  480 (562)
Q Consensus       401 ~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v  480 (562)
                        +.|||+++|+.++.||+++++.+...|.+|||+|||+++++++|.+++.||.+|+|+++|.+++|.+||+.|.++++|
T Consensus       403 --~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~IE~~l~~~~~v  480 (560)
T PRK08974        403 --EPGELWVKGPQVMLGYWQRPEATDEVIKDGWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLHPKV  480 (560)
T ss_pred             --CceEEEEecCCcchhhcCChhhhhhhhhcCCcccCCEEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCe
Confidence              679999999999999999999999889999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEEEeeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEee-cccCCCCCcchHHHHhhhhhhh
Q 008535          481 LEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFE-DIPVNSTGKVQKFVLRGKVNAT  556 (562)
Q Consensus       481 ~~~~v~~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~-~lP~t~~GKv~r~~l~~~~~~~  556 (562)
                      .+++|++.++...++.++++++..+ .....+++++++.++++.+.+|..+.++ +||+|++||++|++|++...+.
T Consensus       481 ~~~~v~~~~~~~~g~~~~~~v~~~~-~~~~~~~l~~~l~~~l~~~~~P~~~~~~~~lP~t~~GK~~r~~l~~~~~~~  556 (560)
T PRK08974        481 LEVAAVGVPSEVSGEAVKIFVVKKD-PSLTEEELITHCRRHLTGYKVPKLVEFRDELPKSNVGKILRRELRDEARAK  556 (560)
T ss_pred             eEEEEEeeecCCcceEEEEEEECCC-CCCCHHHHHHHHHhhcccccCCcEEEEhhhCCCCCCCcEeHHHHHHHHHhh
Confidence            9999999999888888888877554 3356789999999999999999998865 5999999999999999876653

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=100.00  E-value=5.4e-63  Score=503.64  Aligned_cols=429  Identities=19%  Similarity=0.183  Sum_probs=353.4

Q ss_pred             eccHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCcHHHHHHHHHhhhccceEEecCCCCCHHHHHHHHhhCCceEEEE
Q 008535           45 RFSWRQTHQICLKLASALAQLKI-SRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFV  123 (562)
Q Consensus        45 ~~Ty~el~~~~~~~a~~L~~~gv-~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~  123 (562)
                      -+.|+||.+++.++|+.|.+.|+ ++|++|+++++|+++++++++||+++|++++|++|.++.+++.++++.++++++++
T Consensus        19 ~~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~   98 (452)
T PRK07445         19 GYNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWG   98 (452)
T ss_pred             ecChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEe
Confidence            37899999999999999999998 57999999999999999999999999999999999999999999999999999998


Q ss_pred             eccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCchhhhhhcccCccccCCCCCCCCceEEE
Q 008535          124 DYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVN  203 (562)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~  203 (562)
                      +.+....                .     ...                   ..      . .     .....++++++++
T Consensus        99 ~~~~~~~----------------~-----~~~-------------------~~------~-~-----~~~~~~~~~~~i~  126 (452)
T PRK07445         99 LDQLKLS----------------H-----PPP-------------------LP------S-Q-----GILPNLETGWIMI  126 (452)
T ss_pred             cCccccc----------------c-----CCC-------------------CC------c-c-----ccCCCCCCcEEEE
Confidence            7653210                0     000                   00      0 0     0012457899999


Q ss_pred             eccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHHHHHhHhhceEEEEeccCCHHHHHHHHHh
Q 008535          204 YTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILI  283 (562)
Q Consensus       204 ~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~  283 (562)
                      |||||||.||||.+||+++..........+++.+ ++.++++|++|.+|+...+.++..|+++++.+............+
T Consensus       127 ~TSGTTG~PKgV~~t~~~l~~~~~~~~~~~~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~~~  205 (452)
T PRK07445        127 PTGGSSGQIRFAIHTWETLTASVQGFQRYFQLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKRLKSGQELPPN  205 (452)
T ss_pred             eCCCCCCCCcEEEechHHHHHHHHHHHHHhcCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHhccchhhhhhh
Confidence            9999999999999999999888777777776655 467889999999999888888999999988764333333344457


Q ss_pred             cCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHHhcCCeeeccccCccccCcccccccCCCCCCC
Q 008535          284 HKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESS  363 (562)
Q Consensus       284 ~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~  363 (562)
                      ++++++.++|.+++.+++..   ...++++|.+++||++++++..+.++.++.++++.||+||++..+......      
T Consensus       206 ~~~t~~~~vP~~l~~l~~~~---~~~l~~l~~i~~gG~~l~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~------  276 (452)
T PRK07445        206 PSDFFLSLVPTQLQRLLQLR---PQWLAQFRTILLGGAPAWPSLLEQARQLQLRLAPTYGMTETASQIATLKPD------  276 (452)
T ss_pred             cCceEEEehHHHHHHHHhhC---hhhhhcceEEEECCccCCHHHHHHHHhcCCeEecCcchhhhcccccccCch------
Confidence            89999999999999998632   245789999999999999999998887789999999999987554332100      


Q ss_pred             cCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhhhhhhcCCchhhHhhhccceeeeCceeEEc
Q 008535          364 ALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRN  443 (562)
Q Consensus       364 ~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~  443 (562)
                          ........+|.+.++. .++|.           .++.|||+|+|+.++.||++++..     .+|||+|||+|++|
T Consensus       277 ----~~~~~~~~~G~~~p~~-~v~i~-----------~g~~Gel~v~g~~~~~gY~~~~~~-----~~g~~~TGDl~~~d  335 (452)
T PRK07445        277 ----DFLAGNNSSGQVLPHA-QITIP-----------ANQTGNITIQAQSLALGYYPQILD-----SQGIFETDDLGYLD  335 (452)
T ss_pred             ----hhccCCCcCCccCCCC-eEEEc-----------CCCcceEEEeCCccchhhcCCccC-----CCCEEECCCEEEEc
Confidence                0001123456666555 55554           125699999999999999985431     37899999999999


Q ss_pred             CCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCC
Q 008535          444 PDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELP  523 (562)
Q Consensus       444 ~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~  523 (562)
                      +||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..|+.++++++..++ ..+.++++++++++++
T Consensus       336 ~dG~l~~~GR~dd~I~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~g~~~~a~vv~~~~-~~~~~~l~~~~~~~L~  414 (452)
T PRK07445        336 AQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKDP-SISLEELKTAIKDQLS  414 (452)
T ss_pred             CCCCEEEEeecCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeccCcCCCcEEEEEEEeCCC-CCCHHHHHHHHHHhCC
Confidence            999999999999999999999999999999999999999999999999889999999987655 3567899999999999


Q ss_pred             CCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhhc
Q 008535          524 SCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNATA  557 (562)
Q Consensus       524 ~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~~  557 (562)
                      .|++|+.+.+++ ||+|++||++|++|++++.++-
T Consensus       415 ~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~  449 (452)
T PRK07445        415 PFKQPKHWIPVPQLPRNPQGKINRQQLQQIAVQRL  449 (452)
T ss_pred             cccCCeEEEEecCCCCCCCcccCHHHHHHHHHHhh
Confidence            999999988655 9999999999999999987754

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=1e-62  Score=489.37  Aligned_cols=509  Identities=25%  Similarity=0.326  Sum_probs=411.6

Q ss_pred             CChHH-HHHHHHHHc-CCceEEEECC------eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhh
Q 008535           20 LTPID-FLERAAHVY-GDATSIIYGT------VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVP   91 (562)
Q Consensus        20 ~ti~~-~l~~~a~~~-p~~~a~~~~~------~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~   91 (562)
                      .|+.. .+++..+.. ++.+++++.+      ..+||.|+.+++.++|+.|.++|+++||+|++++|+.++++++++||+
T Consensus        63 ln~~~n~~~~~~~~~~~~~~a~~~~~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~ia~lA~~  142 (626)
T KOG1175|consen   63 LNACYNCLDRHIKEKGGDKVAIIFEGNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAVIAMLACA  142 (626)
T ss_pred             hhhhHhhhhhhhhhcCCCCcEEEEEecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHHHHHHHHh
Confidence            34443 334444444 7788877642      348999999999999999999999999999999999999999999999


Q ss_pred             hccceEEecCCCCCHHHHHHHHhhCCceEEEEeccchH---------HHHHHHhhcCCCCcCCCCCceeccCCCCCCCCC
Q 008535           92 MAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVE---------VVQNALDILSPNHKCDKAPLLVTIPECDHYQPS  162 (562)
Q Consensus        92 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (562)
                      ++|++.+++...+++.++...++.+++|++++.+....         ...++...+......  ....+.          
T Consensus       143 r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~--~~~~~~----------  210 (626)
T KOG1175|consen  143 RIGAIHSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRP--VWLDLI----------  210 (626)
T ss_pred             hcCeEEEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccc--cceeeE----------
Confidence            99999999999999999999999999999999875432         122221111100000  000000          


Q ss_pred             cccccCCCCCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechh-HHHHHHHHHhhcCCCCCCee
Q 008535          163 TCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRG-AYLNSLAQISRCDVRDMPVF  241 (562)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~-l~~~~~~~~~~~~~~~~~~~  241 (562)
                         +....  ....|+..+........ +.+...+|+.+|+|||||||.||++.+++.. ++..+......++++++|++
T Consensus       211 ---~~~~~--~d~~~~~~~~~a~~~~~-~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~q~~dv~  284 (626)
T KOG1175|consen  211 ---VSRRN--RDLFWSLELKKASPEHP-CVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHFDLQPSDVL  284 (626)
T ss_pred             ---Eeccc--ccccHHHHhhhcCCCCC-ceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceeccCCCcceE
Confidence               00000  02344444443333322 5567788999999999999999999999876 56666677778899999999


Q ss_pred             eeecccccchhhHH-HHHhHhhceEEEEec--cCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccc--cccceEEE
Q 008535          242 LWTLDMFRCNGWCC-TWAMAAVGGINVCIR--TVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQN--QLQRKVII  316 (562)
Q Consensus       242 l~~~pl~~~~gl~~-~~~~~~~g~~~v~~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~--~l~~l~~i  316 (562)
                      .+...+.|+.|.++ .+.+++.|++.++..  ++++..+++.+.++++|.+++.|..++.|.........  +.+++|.+
T Consensus       285 ~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~~~~~sLk~~  364 (626)
T KOG1175|consen  285 WCASDLGWITGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVTSYSLKSLRTC  364 (626)
T ss_pred             EEecccCeeeccchhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhccccccccccceEEEE
Confidence            99999999999876 566888999998875  46999999999999999999999999988776544333  33679999


Q ss_pred             EEeCCCChHHHHHHHH-hcCC-eeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCc
Q 008535          317 VIAGVLPTIEVLEQVA-NFGF-NIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTM  394 (562)
Q Consensus       317 ~~~g~~l~~~~~~~~~-~~~~-~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~  394 (562)
                      .++||++.++..+++. .++. +|++.||+||+|+.++.+.....          +..+...+.|.+++ .+.|.|+ +|
T Consensus       365 ~S~Gepi~~~~~ew~~~~~~~~pv~e~~~qtEtG~~~i~~~~g~~----------p~~pg~~~~p~~g~-~v~i~de-~g  432 (626)
T KOG1175|consen  365 GSVGEPINPEAWEWWKRVTGLDPIYETYGQTETGGICITPKPGKL----------PIKPGSAGKPFPGY-DVQILDE-NG  432 (626)
T ss_pred             eecCccCCcchHHHHHHhcCccchhhceeeeccCceeeeccCCCC----------CcCccccCCCCCCc-ceEEECC-CC
Confidence            9999999999999998 5677 59999999999999887643221          44556777888888 8888887 78


Q ss_pred             ccccCCCCceeEEEEcch---hhhhhhcCCchhhHhh-hc--cceeeeCceeEEcCCCcEEEeccccceeecCCeEechH
Q 008535          395 KSVPHDGKTLGEVMFRAN---TVMLGYFKNPKATEEA-FR--NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSL  468 (562)
Q Consensus       395 ~~~~~~~~~~Gel~v~~~---~~~~gy~~~~~~~~~~-~~--~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~  468 (562)
                      +.++.++ +.|+|+++.+   ..+++|+++++..... |.  .|||.|||.+++|+||.+++.||.||+|+++|.++++.
T Consensus       433 ~~~~~~~-~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k~pg~y~tGD~~~rd~dGY~~i~GR~DDviNvsGhRigta  511 (626)
T KOG1175|consen  433 NELPPST-GNGELRLKPPWPPGMFRTLWGNHERFRAAYFKKFPGYYFTGDGGRRDEDGYYWILGRVDDVINVSGHRIGTA  511 (626)
T ss_pred             CCcCCCC-ceeEEEEeCCCCccccccccCCHHHhhhhhcccCCceEEecCceEEcCCceEEEEecccccccccceeecHH
Confidence            8887766 6799999985   6689999998844444 33  89999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCCCCC---HHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcc
Q 008535          469 EVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREAS---PEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKV  544 (562)
Q Consensus       469 ~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv  544 (562)
                      |||+++.+||.|.|++|++.+++..|+.+++||+++++....   .++|++++++.+.+++.|+.|.+++ ||+|.+||+
T Consensus       512 EIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~g~~~~~~L~kel~~~VR~~igp~a~P~~I~~v~~LPkTrSGKi  591 (626)
T KOG1175|consen  512 EIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLKSGSHDPEQLTKELVKHVRSVIGPYAVPRLIVFVPGLPKTRSGKI  591 (626)
T ss_pred             HHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEcCCCCChHHHHHHHHHHHHhhcCcccccceeEecCCCCccccchh
Confidence            999999999999999999999999999999999999985433   3688888999999999999999885 999999999


Q ss_pred             hHHHHhhhhhhhccc
Q 008535          545 QKFVLRGKVNATAVG  559 (562)
Q Consensus       545 ~r~~l~~~~~~~~~~  559 (562)
                      .|+.||++..+++.|
T Consensus       592 mRr~lrki~~g~~~~  606 (626)
T KOG1175|consen  592 MRRALRKIASGKAVG  606 (626)
T ss_pred             HHHHHHHHhccCccc
Confidence            999999999887544

>PRK13390 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.5e-62  Score=507.43  Aligned_cols=479  Identities=21%  Similarity=0.301  Sum_probs=380.9

Q ss_pred             HHHHHcCCceEEEEC--CeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEEecCCCCC
Q 008535           28 RAAHVYGDATSIIYG--TVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLD  105 (562)
Q Consensus        28 ~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~  105 (562)
                      .+++.+|+++|+.+.  +.++||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++++++.++
T Consensus         5 ~~a~~~p~~~a~~~~~~~~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~l~~~~~   84 (501)
T PRK13390          5 THAQIAPDRPAVIVAETGEQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAINHHLT   84 (501)
T ss_pred             hhhhhCCCCcEEEecCCCeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEeccccCCC
Confidence            467789999999863  578999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCchhhhhhccc
Q 008535          106 SATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGK  185 (562)
Q Consensus       106 ~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (562)
                      .+++.++++.+++++++++....+........         ....+.+....              .....+.+......
T Consensus        85 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---------~~~~~~~~~~~--------------~~~~~~~~~~~~~~  141 (501)
T PRK13390         85 APEADYIVGDSGARVLVASAALDGLAAKVGAD---------LPLRLSFGGEI--------------DGFGSFEAALAGAG  141 (501)
T ss_pred             HHHHHHHHHhcCCcEEEEcchhhhHHHHhhhc---------cceEEEecCcc--------------cccccHHHHhcccC
Confidence            99999999999999999987654332221110         11111111000              00112222211110


Q ss_pred             CccccCCCCCCCCceEEEeccCCCCCCCceEe--echhHHHHH----HHHHhhcCCCCCCeeeeecccccchhhHHHHHh
Q 008535          186 ADFEMMQPNHECDPISVNYTSGSTGDPKGVVY--SHRGAYLNS----LAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAM  259 (562)
Q Consensus       186 ~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~--t~~~l~~~~----~~~~~~~~~~~~~~~l~~~pl~~~~gl~~~~~~  259 (562)
                      .     ......+.++++|||||||.||||.+  +|.++....    ......+.+...+++++.+|++|.+++...+..
T Consensus       142 ~-----~~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~~~~  216 (501)
T PRK13390        142 P-----RLTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPLRWCSMV  216 (501)
T ss_pred             C-----CCCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHhCCCCCCeEEecccchhhhHHHHHHHH
Confidence            0     01122357999999999999999996  455544321    112345678889999999999999988665556


Q ss_pred             HhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhcccc--ccccccceEEEEEeCCCChHHHHHHHHh-cCC
Q 008535          260 AAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASAS--DQNQLQRKVIIVIAGVLPTIEVLEQVAN-FGF  336 (562)
Q Consensus       260 ~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~l~~l~~i~~~g~~l~~~~~~~~~~-~~~  336 (562)
                      +..|+++++.+.+++..+++.++++++++++++|.++..|+.....  ....++++|.++.+|++++++..+.+++ ++.
T Consensus       217 ~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~  296 (501)
T PRK13390        217 HALGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVRTRYDVSSLRAVIHAAAPCPVDVKHAMIDWLGP  296 (501)
T ss_pred             HhcCceEEEcCCcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhcccCChhhhheEEEcCCCCCHHHHHHHHHhcCC
Confidence            6789998888888999999999999999999999999998865422  2345779999999999999999998884 688


Q ss_pred             eeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhhhh
Q 008535          337 NIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVML  416 (562)
Q Consensus       337 ~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~  416 (562)
                      .+++.||+||+++++.....  .         .......+|.+.++  .+++++. ++.+++.|  +.|||+++|++++.
T Consensus       297 ~~~~~YG~tE~~~~~~~~~~--~---------~~~~~~~~G~~~~g--~~~i~d~-~~~~~~~g--~~Gel~v~~~~~~~  360 (501)
T PRK13390        297 IVYEYYSSTEAHGMTFIDSP--D---------WLAHPGSVGRSVLG--DLHICDD-DGNELPAG--RIGTVYFERDRLPF  360 (501)
T ss_pred             ceeeeecccccCceEEecch--h---------hccCCCCcCCcccc--eEEEECC-CCCCCCCC--CceEEEEecCCccc
Confidence            99999999999765433210  0         01122456777665  3677774 66777665  77999999999999


Q ss_pred             hhcCCchhhHhhhc---cceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCCCC
Q 008535          417 GYFKNPKATEEAFR---NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQL  493 (562)
Q Consensus       417 gy~~~~~~~~~~~~---~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~  493 (562)
                      ||+++++.+...|.   ++|++|||+|++|++|.+++.||.||+|+.+|.+|+|.+||++|.+++.|.+++|++++++..
T Consensus       361 gy~~~~~~t~~~~~~~~~~w~~tGDl~~~~~dg~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~  440 (501)
T PRK13390        361 RYLNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEM  440 (501)
T ss_pred             cccCChhhhHHhhccCCCceEEcCceEEECCCCeEEEeeccccceeECCeeeCHHHHHHHHHhCCCeeEEEEEeccCccc
Confidence            99999999988874   679999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CceeEEEEEeCCCCCCC---HHHHHHHHhccCCCCCCCcEEEee-cccCCCCCcchHHHHh
Q 008535          494 KEVPVAFVKLKEGREAS---PEELVTFCGDELPSCMVPRAIFFE-DIPVNSTGKVQKFVLR  550 (562)
Q Consensus       494 ~~~~v~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~p~~i~~~-~lP~t~~GKv~r~~l~  550 (562)
                      ++.+++++++.++....   .+++.++++++++.+++|..++++ +||+|++||++|++|+
T Consensus       441 ~e~~~~~v~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~~~~iP~t~~GKi~r~~L~  501 (501)
T PRK13390        441 GEQVKAVIQLVEGIRGSDELARELIDYTRSRIAHYKAPRSVEFVDELPRTPTGKLVKGLLR  501 (501)
T ss_pred             CceeEEEEEecCCCCcchhhHHHHHHHHHHhcccCCCCcEEEEeccCCCCCccceehhhcC
Confidence            99999999877653322   468999999999999999998865 4999999999999985

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=6.8e-63  Score=614.55  Aligned_cols=488  Identities=21%  Similarity=0.196  Sum_probs=410.9

Q ss_pred             CChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEEe
Q 008535           20 LTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSA   99 (562)
Q Consensus        20 ~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~   99 (562)
                      .++.++|+++++.+|+++|+++.+.++||+||.+++.++|+.|.+.|+++|++|+++++++++++++++||+++|++++|
T Consensus      2003 ~~~~~~~~~~a~~~p~~~A~~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~~~~~lAil~aGa~~vp 2082 (5163)
T PRK12316       2003 PGVHQRIAEQAARAPEAIAVVFGDQHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYVP 2082 (5163)
T ss_pred             CCHHHHHHHHHHhCCCCeEEEcCCCeEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhceEEee
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCchhh
Q 008535          100 LNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYND  179 (562)
Q Consensus       100 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (562)
                      ++|.++.+++.++++.+++++++++......+....           ....+.+....                     .
T Consensus      2083 ld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~-----------~~~~~~~~~~~---------------------~ 2130 (5163)
T PRK12316       2083 LDPNYPAERLAYMLEDSGAALLLTQRHLLERLPLPA-----------GVARLPLDRDA---------------------E 2130 (5163)
T ss_pred             cCCCCCHHHHHHHHHhcCCCEEEeChhhhhhccccc-----------ccceEeccchh---------------------h
Confidence            999999999999999999999999876543221100           00111111100                     0


Q ss_pred             hhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHHHHHh
Q 008535          180 LLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAM  259 (562)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~~~~~  259 (562)
                      +.. .+. ........++++++|+|||||||.||||+++|+++.....+....+++.++|+++...|++|..++...+.+
T Consensus      2131 ~~~-~~~-~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~ 2208 (5163)
T PRK12316       2131 WAD-YPD-TAPAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERYELSPADCELQFMSFSFDGAHEQWFHP 2208 (5163)
T ss_pred             hhc-cCc-cCCCCCCCCCCeEEEEeCccCCCCCCEeEEccHHHHHHHHHHHHhcCCCCcceEEEecCchHHHHHHHHHHH
Confidence            000 000 011122467899999999999999999999999999999998899999999999999999999999889999


Q ss_pred             HhhceEEEEec--cCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHHh-c-C
Q 008535          260 AAVGGINVCIR--TVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVAN-F-G  335 (562)
Q Consensus       260 ~~~g~~~v~~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~~-~-~  335 (562)
                      +..|+++++.+  .+++..+++.++++++|++..+|++++.|........ ...++|.+++|||+++++..+.|.+ + +
T Consensus      2209 L~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-~~~~lr~~~~gGe~l~~~~~~~~~~~~~~ 2287 (5163)
T PRK12316       2209 LLNGARVLIRDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERDG-RPPAVRVYCFGGEAVPAASLRLAWEALRP 2287 (5163)
T ss_pred             HhCCCEEEeCCcccCCHHHHHHHHHHcCCeEEEcChHHHHHHHhhhhccc-CCcceeEEEEecccCCHHHHHHHHHhCCC
Confidence            99999996655  3689999999999999999999999999987654332 2448999999999999999999984 3 6


Q ss_pred             CeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhhh
Q 008535          336 FNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVM  415 (562)
Q Consensus       336 ~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~  415 (562)
                      .++++.||+||++..++.........       .......+|.|.++. .+.|++. ++++++.|  +.|||+|+|++++
T Consensus      2288 ~~l~n~YG~TE~~~~~~~~~~~~~~~-------~~~~~~~iG~p~~~~-~~~i~d~-~~~~vp~g--~~GEl~i~G~~v~ 2356 (5163)
T PRK12316       2288 VYLFNGYGPTEAVVTPLLWKCRPQDP-------CGAAYVPIGRALGNR-RAYILDA-DLNLLAPG--MAGELYLGGEGLA 2356 (5163)
T ss_pred             cEEEECccchhheeeeeeeecccccc-------cCCCcCCcccccCCC-EEEEECC-CCCCCCCC--CeeEEEecchhhc
Confidence            78999999999986655432211100       001124578888777 7888876 56777776  7899999999999


Q ss_pred             hhhcCCchhhHhhhc--------cceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEe
Q 008535          416 LGYFKNPKATEEAFR--------NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVG  487 (562)
Q Consensus       416 ~gy~~~~~~~~~~~~--------~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~  487 (562)
                      +||+++|+.|.+.|.        ++||+|||+|++++||.++++||.||+||++|.+|+|.|||.+|.++|+|.+++|++
T Consensus      2357 ~GY~~~p~~T~~~f~~~~~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rie~~eIE~~l~~~~~v~~a~v~~ 2436 (5163)
T PRK12316       2357 RGYLNRPGLTAERFVPDPFSASGERLYRTGDLARYRADGVVEYLGRIDHQVKIRGFRIELGEIEARLQAHPAVREAVVVA 2436 (5163)
T ss_pred             ccccCChhhhhhhccCCCCCCCCCeeEecccEEEEcCCCcEEEecCCCCeEEEcCccCChHHHHHHHhhCcccceEEEEE
Confidence            999999999999982        359999999999999999999999999999999999999999999999999999998


Q ss_pred             eeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEee-cccCCCCCcchHHHHhhhhh
Q 008535          488 KVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFE-DIPVNSTGKVQKFVLRGKVN  554 (562)
Q Consensus       488 ~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~-~lP~t~~GKv~r~~l~~~~~  554 (562)
                      .++. .++.++++|++.++.....++++++++++||.|++|..+++. .||+|+|||++|++|++...
T Consensus      2437 ~~~~-~~~~l~a~v~~~~~~~~~~~~l~~~l~~~Lp~~~vP~~~~~l~~lP~t~~GKidR~~L~~~~~ 2503 (5163)
T PRK12316       2437 QDGA-SGKQLVAYVVPDDAAEDLLAELRAWLAARLPAYMVPAHWVVLERLPLNPNGKLDRKALPKPDV 2503 (5163)
T ss_pred             EecC-CCeEEEEEEEecCCCccCHHHHHHHHHhhCchhcCcceEeeecccCCCCCCccCHhhcCCCcc
Confidence            8766 678999999988777778899999999999999999988755 49999999999999987653

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=100.00  E-value=6.8e-62  Score=507.30  Aligned_cols=488  Identities=19%  Similarity=0.239  Sum_probs=402.6

Q ss_pred             CChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEEe
Q 008535           20 LTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSA   99 (562)
Q Consensus        20 ~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~   99 (562)
                      +++.++|+++++.+|+++++.+.+..+||+||.+++.++|..|.+.|+++||+|+++++|+.+++++++||+++|++++|
T Consensus         2 ~~~~~~l~~~a~~~p~~~~~~~~~~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~~~~G~~~~~   81 (503)
T PRK04813          2 MDIIETIEEFAQTQPDFPAYDYLGEKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAGHAYIP   81 (503)
T ss_pred             chHHHHHHHHHHhCCCceEEEeCCcEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEec
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCchhh
Q 008535          100 LNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYND  179 (562)
Q Consensus       100 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (562)
                      +++.++.+++..+++..++++++++.......    .          ....+...                     .+.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----------~~~~~~~~---------------------~~~~  126 (503)
T PRK04813         82 VDVSSPAERIEMIIEVAKPSLIIATEELPLEI----L----------GIPVITLD---------------------ELKD  126 (503)
T ss_pred             CCCCChHHHHHHHHHhcCCCEEEecccccccc----c----------CCcEEehH---------------------Hhhh
Confidence            99999999999999999999999987641000    0          00011100                     0000


Q ss_pred             hhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHHHHHh
Q 008535          180 LLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAM  259 (562)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~~~~~  259 (562)
                      ... .........+..++++++++|||||||.||+|.++|+++.....+....+.+...++++...|++|..++...+.+
T Consensus       127 ~~~-~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  205 (503)
T PRK04813        127 IFA-TGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDFALPEGPQFLNQAPYSFDLSVMDLYPT  205 (503)
T ss_pred             hhh-ccccccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHcCCCcCceeeecCCcchhHhHHHHHHH
Confidence            000 0011111122456789999999999999999999999999888888888889999999999999999998888888


Q ss_pred             HhhceEEEEecc---CCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHH-hc-
Q 008535          260 AAVGGINVCIRT---VSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVA-NF-  334 (562)
Q Consensus       260 ~~~g~~~v~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~-~~-  334 (562)
                      +..|+++++.+.   .++..+++.+++++++.+..+|.+++.++.........+++++.++++|+++++...+.+. .+ 
T Consensus       206 l~~g~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~  285 (503)
T PRK04813        206 LASGGTLVALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSFNEEHLPNLTHFLFCGEELPHKTAKKLLERFP  285 (503)
T ss_pred             HhcCCEEEEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhccCcccCCCceEEEEecCcCCHHHHHHHHHHCC
Confidence            999999988764   5889999999999999999999999987766544556788999999999999999999988 45 


Q ss_pred             CCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhh
Q 008535          335 GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTV  414 (562)
Q Consensus       335 ~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~  414 (562)
                      +..+++.||+||++..+.........       ........+|.+.++. .++|.+. ++.+++.+  +.|||+++|+.+
T Consensus       286 ~~~~~~~yG~tE~~~~~~~~~~~~~~-------~~~~~~~~~g~~~~~~-~~~i~d~-~~~~~~~g--~~Gel~v~~~~~  354 (503)
T PRK04813        286 SATIYNTYGPTEATVAVTSIEITDEM-------LDQYKRLPIGYAKPDS-PLLIIDE-EGTKLPDG--EQGEIVISGPSV  354 (503)
T ss_pred             CceEEeCcccchheeEEEEEEecccc-------cccCCCCcccccCCCC-EEEEECC-CCCCCCCC--CceEEEEecccc
Confidence            78899999999997654432221110       0011223466666666 7777775 66777665  679999999999


Q ss_pred             hhhhcCCchhhHhhhc--c--ceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeC
Q 008535          415 MLGYFKNPKATEEAFR--N--GWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVD  490 (562)
Q Consensus       415 ~~gy~~~~~~~~~~~~--~--g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~  490 (562)
                      +.||++++..+...|.  +  +||+|||+|++ ++|.+++.||.+|+|+.+|.+++|.+||+.+.++|+|.+++|++.++
T Consensus       355 ~~gy~~~~~~~~~~~~~~~g~~~~~tGD~~~~-~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~  433 (503)
T PRK04813        355 SKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-EDGLLFYQGRIDFQIKLNGYRIELEEIEQNLRQSSYVESAVVVPYNK  433 (503)
T ss_pred             ccccCCChhHhHHhhccCCCceeEECCceEEe-eCCeEEEeccccceEEECcEEeCHHHHHHHHHhCCCcceEEEEEeeC
Confidence            9999999999988873  3  49999999999 89999999999999999999999999999999999999999999887


Q ss_pred             CCCCceeEEEEEeCCCCC----CCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhh
Q 008535          491 DQLKEVPVAFVKLKEGRE----ASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNA  555 (562)
Q Consensus       491 ~~~~~~~v~~v~~~~~~~----~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~  555 (562)
                      ...++.+++++++.++..    ...++++++++++++.+++|..+.+++ ||+|++||++|++|++.+++
T Consensus       434 ~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~gKv~r~~l~~~~~~  503 (503)
T PRK04813        434 DHKVQYLIAYVVPKEEDFEREFELTKAIKKELKERLMEYMIPRKFIYRDSLPLTPNGKIDRKALIEEVNK  503 (503)
T ss_pred             CCCccEEEEEEEeccccccccchhHHHHHHHHHhhCccccCCeEEEEeccCCCCCCCCCcHHHHHHHhcC
Confidence            777788999988765421    122578999999999999999988665 99999999999999998763

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=1.3e-62  Score=612.02  Aligned_cols=483  Identities=20%  Similarity=0.178  Sum_probs=409.9

Q ss_pred             CCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEE
Q 008535           19 PLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLS   98 (562)
Q Consensus        19 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v   98 (562)
                      +.++.++|+++++.+|+++|+.+.++++||+||.++++++|+.|.+.|+++|++|+++++|+++++++++||+++|++++
T Consensus       510 ~~~~~~~~~~~a~~~p~~~A~~~~~~~~TY~eL~~~~~~lA~~L~~~gv~~g~~V~l~~~~s~~~i~~~la~~~aG~~~v  589 (5163)
T PRK12316        510 QRGVHRLFEEQVERTPEAPALAFGEETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYV  589 (5163)
T ss_pred             CCCHHHHHHHHHHHCCCCeEEEeCCceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCEEe
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCchh
Q 008535           99 ALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYN  178 (562)
Q Consensus        99 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (562)
                      |++|.++.+++.++++.+++++++++......+...       .    ...++.++....                    
T Consensus       590 pld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~-------~----~~~~~~~~~~~~--------------------  638 (5163)
T PRK12316        590 PLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLPLA-------A----GVQVLDLDRPAA--------------------  638 (5163)
T ss_pred             ccCccCcHHHHHHHHHhCCCCEEEEChhhhhhCCcc-------c----CceEEEecCcch--------------------
Confidence            999999999999999999999999987643321100       0    111222211100                    


Q ss_pred             hhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHHHHH
Q 008535          179 DLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWA  258 (562)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~~~~  258 (562)
                       +..... .........++++++|+|||||||.||||+++|+++.....+....+++..+++++...|++|..++...+.
T Consensus       639 -~~~~~~-~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~p~~fd~~~~~~~~  716 (5163)
T PRK12316        639 -WLEGYS-EENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYGLGVGDTVLQKTPFSFDVSVWEFFW  716 (5163)
T ss_pred             -hhccCC-CCCCCCCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhcCCCCCCEEEeeCCeehHHHHHHHHH
Confidence             000000 011112245789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHhhceEEEEec---cCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHHh-c
Q 008535          259 MAAVGGINVCIR---TVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVAN-F  334 (562)
Q Consensus       259 ~~~~g~~~v~~~---~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~~-~  334 (562)
                      ++..|+++++.+   ..++..+++.+.++++|+++++|++++.|++...  ...++++|.+++|||+++++..+.+.+ +
T Consensus       717 ~L~~G~~l~i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~--~~~~~~l~~~~~gGe~l~~~~~~~~~~~~  794 (5163)
T PRK12316        717 PLMSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDED--VASCTSLRRIVCSGEALPADAQEQVFAKL  794 (5163)
T ss_pred             HHhCCCEEEECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhccc--cccCCCccEEEEeeccCCHHHHHHHHHhC
Confidence            999999999875   3789999999999999999999999999987542  245789999999999999999999863 3


Q ss_pred             -CCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchh
Q 008535          335 -GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANT  413 (562)
Q Consensus       335 -~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~  413 (562)
                       +.++++.||+||++..++......          .......+|.|.++. .++|+|. ++++++.|  +.|||+|+|++
T Consensus       795 ~~~~l~n~YG~TE~~~~~~~~~~~~----------~~~~~~~iG~p~~~~-~~~i~d~-~~~~~p~G--~~GEl~i~G~~  860 (5163)
T PRK12316        795 PQAGLYNLYGPTEAAIDVTHWTCVE----------EGGDSVPIGRPIANL-ACYILDA-NLEPVPVG--VLGELYLAGRG  860 (5163)
T ss_pred             CCCeEEeCcCcChheeeeeEEeccc----------ccCCCCCCccccCCC-EEEEECC-CCCCCCCC--CceEEEecccc
Confidence             689999999999986544432111          011234678887777 7888886 57777766  77999999999


Q ss_pred             hhhhhcCCchhhHhhhc-------cceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEE
Q 008535          414 VMLGYFKNPKATEEAFR-------NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVV  486 (562)
Q Consensus       414 ~~~gy~~~~~~~~~~~~-------~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~  486 (562)
                      ++.||+++++.|.+.|.       ++||+|||+|++++||.++++||.||+||++|.+|+|.|||++|.++|.|.+++|+
T Consensus       861 v~~GYl~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~dG~l~~~GR~d~~ik~~G~rI~~~EIE~~l~~~p~V~~a~V~  940 (5163)
T PRK12316        861 LARGYHGRPGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEYAGRIDHQVKLRGLRIELGEIEARLLEHPWVREAAVL  940 (5163)
T ss_pred             cChhhCCChhhhhhhCCCCCCCCCCeeEecCccEEECCCCCEEeecccCCEEEEceEEcChHHHHHHHHhCCCcceEEEE
Confidence            99999999999998883       35999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhh
Q 008535          487 GKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVN  554 (562)
Q Consensus       487 ~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~  554 (562)
                      +.+    ++.++++|++.++.....+++++++++++|.|++|+.+.+.+ ||+|++||++|++|.+...
T Consensus       941 ~~~----~~~lva~vv~~~~~~~~~~~l~~~l~~~Lp~y~vP~~i~~v~~lP~t~~GKidr~~L~~~~~ 1005 (5163)
T PRK12316        941 AVD----GKQLVGYVVLESEGGDWREALKAHLAASLPEYMVPAQWLALERLPLTPNGKLDRKALPAPEA 1005 (5163)
T ss_pred             EcC----CCeEEEEEEccCCCCCCHHHHHHHHHhhCCCccCCCeEEEHhhCCCCCCCChhHHhhcCccc
Confidence            875    678999999887666778899999999999999999988655 9999999999999987643

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=1.3e-62  Score=602.96  Aligned_cols=491  Identities=19%  Similarity=0.181  Sum_probs=408.0

Q ss_pred             CCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEE
Q 008535           19 PLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLS   98 (562)
Q Consensus        19 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v   98 (562)
                      ..++.++|+++++.+|+++|+++.++++||+||.++++++|+.|.+.|+++|++|++++++++++++++|||+++|++++
T Consensus      1573 ~~~~~~~~~~~a~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~~~~V~l~~~~s~~~vv~~lavlkaG~~~v 1652 (3956)
T PRK12467       1573 ARLVHQLIEDQAAATPEAVALVFGEQELTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMVVGLLAILKAGGAYV 1652 (3956)
T ss_pred             cccHHHHHHHHHHhCCCCeEEEeCCcEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCHHHHHHHHHhhccCceee
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCchh
Q 008535           99 ALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYN  178 (562)
Q Consensus        99 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (562)
                      |++|.++.+++.++++.+++++++++......+...       .    ...++.++...                     
T Consensus      1653 pldp~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~-------~----~~~~~~~~~~~--------------------- 1700 (3956)
T PRK12467       1653 PLDPEYPRERLAYMIEDSGIELLLTQSHLQARLPLP-------D----GLRSLVLDQED--------------------- 1700 (3956)
T ss_pred             ecCCCCCHHHHHHHHHhCCCCEEEeChhhhhhCccc-------c----CCcEEEecccc---------------------
Confidence            999999999999999999999999987643322110       0    11122221110                     


Q ss_pred             hhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHHHHH
Q 008535          179 DLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWA  258 (562)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~~~~  258 (562)
                      .+...... ........++++++|+|||||||.||||+++|+++.....+....+++..+|+++...|++|..++...+.
T Consensus      1701 ~~~~~~~~-~~~~~~~~~~~~ayiiyTSGSTG~PKGV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~ 1779 (3956)
T PRK12467       1701 DWLEGYSD-SNPAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQLSAADVVLQFTSFAFDVSVWELFW 1779 (3956)
T ss_pred             chhccCCC-CCCCCCCCCcCcEEEEECCCcCCCCCEEEEcCHHHHHHHHHHHHhcCCCcccEEEEecCccHHHHHHHHHH
Confidence            00000000 01112245789999999999999999999999999999888888999999999999999999999988999


Q ss_pred             hHhhceEEEEecc---CCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHHh-c
Q 008535          259 MAAVGGINVCIRT---VSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVAN-F  334 (562)
Q Consensus       259 ~~~~g~~~v~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~~-~  334 (562)
                      ++..|+++++.+.   .++..+++.++++++|++.++|++++.|..... ....++++|.+++|||+++++..+.|.+ +
T Consensus      1780 ~L~~G~~lvi~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~-~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~ 1858 (3956)
T PRK12467       1780 PLINGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDE-QVEHPLSLRRVVCGGEALEVEALRPWLERL 1858 (3956)
T ss_pred             HHhCCCEEEEcChhhcCCHHHHHHHHHHcCCeEEECCHHHHHHHHhhcc-ccccCCCceEEEEccccCCHHHHHHHHHhC
Confidence            9999999998763   579999999999999999999999999987532 2345789999999999999999998874 4


Q ss_pred             -CCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchh
Q 008535          335 -GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANT  413 (562)
Q Consensus       335 -~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~  413 (562)
                       +.++++.||+||++..++........       ........+|.|.++. .+.|.|. .+++++.|  +.|||+|+|++
T Consensus      1859 ~~~~l~n~YG~TE~t~~~t~~~~~~~~-------~~~~~~~~iG~p~~~~-~~~vld~-~~~~vp~G--~~GEl~i~G~~ 1927 (3956)
T PRK12467       1859 PDTGLFNLYGPTETAVDVTHWTCRRKD-------LEGRDSVPIGQPIANL-STYILDA-SLNPVPIG--VAGELYLGGVG 1927 (3956)
T ss_pred             CCCeEEeCccCCcCEEeEEEEeccccc-------cccCCCCCcccccCCC-EEEEECC-CCCCCCCC--CceEEEecccc
Confidence             57899999999998666543221100       0011134678888777 7788775 67777776  77999999999


Q ss_pred             hhhhhcCCchhhHhhhc--------cceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEE
Q 008535          414 VMLGYFKNPKATEEAFR--------NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAV  485 (562)
Q Consensus       414 ~~~gy~~~~~~~~~~~~--------~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v  485 (562)
                      +++||+++|+.|.++|.        ++||+|||+|++++||.++++||.||+||++|.+|+|.+||++|.++|+|.+++|
T Consensus      1928 v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~D~qVki~G~rIel~eIE~~l~~~p~V~~a~v 2007 (3956)
T PRK12467       1928 LARGYLNRPALTAERFVADPFGTVGSRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLREQGGVREAVV 2007 (3956)
T ss_pred             ccccccCChhhhhhhCcCCCCCCCCccceeccceEEECCCCCEEEecccCceEEeCeEEechHHHHHHHHhCCCcceEEE
Confidence            99999999999999882        3599999999999999999999999999999999999999999999999999999


Q ss_pred             EeeeCCCCCceeEEEEEeCCCCCC--------CHHHHHHHHhccCCCCCCCcEEEee-cccCCCCCcchHHHHhhhhhh
Q 008535          486 VGKVDDQLKEVPVAFVKLKEGREA--------SPEELVTFCGDELPSCMVPRAIFFE-DIPVNSTGKVQKFVLRGKVNA  555 (562)
Q Consensus       486 ~~~~~~~~~~~~v~~v~~~~~~~~--------~~~~l~~~~~~~l~~~~~p~~i~~~-~lP~t~~GKv~r~~l~~~~~~  555 (562)
                      ++.+ ...++.++++++.......        ..+++++++++.+|.|++|..+++. +||+|+|||++|++|.+.+..
T Consensus      2008 v~~~-~~~~~~lva~vv~~~~~~~~~~~~~~~~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidr~~L~~~~~~ 2085 (3956)
T PRK12467       2008 IAQD-GANGKQLVAYVVPTDPGLVDDDEAQVALRAILKNHLKASLPEYMVPAHLVFLARMPLTPNGKLDRKALPAPDAS 2085 (3956)
T ss_pred             EEec-CCCCcEEEEEEEecCcccccccccccccHHHHHHHHHhhCchhhCchhhhhhhcCCCCCCCCcchhhCCCCccc
Confidence            9886 4456789999987654221        3468999999999999999988755 599999999999999876543

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=5.4e-62  Score=500.75  Aligned_cols=452  Identities=22%  Similarity=0.250  Sum_probs=378.6

Q ss_pred             ChHHHH-HHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEEe
Q 008535           21 TPIDFL-ERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSA   99 (562)
Q Consensus        21 ti~~~l-~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~   99 (562)
                      ++.+.+ .+.++.+|+++|+.+.+.++||.||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++|
T Consensus         3 ~~~~~~~~~~a~~~~~~~a~~~~~~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~v~   82 (458)
T PRK09029          3 IFSDWPWRHWAQVRPQAIALRLNDEVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVLP   82 (458)
T ss_pred             hhhcChHHHHHHhCCCceeeecCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEee
Confidence            344444 5668899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCchhh
Q 008535          100 LNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYND  179 (562)
Q Consensus       100 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (562)
                      +++..+.+++..+++++++++++++.+.... ..    +         ... ...                         
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~----~---------~~~-~~~-------------------------  122 (458)
T PRK09029         83 LNPQLPQPLLEELLPSLTLDFALVLEGENTF-SA----L---------TSL-HLQ-------------------------  122 (458)
T ss_pred             cCCCCCHHHHHHHHHhcCCCEEEEcCcccch-hh----c---------ccc-ccc-------------------------
Confidence            9999999999999999999999998764221 00    0         000 000                         


Q ss_pred             hhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHHHHHh
Q 008535          180 LLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAM  259 (562)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~~~~~  259 (562)
                        ....   .......++++++++|||||||.||+|.+||+++..........+++..+++++..+|++|.+|+...+.+
T Consensus       123 --~~~~---~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~  197 (458)
T PRK09029        123 --LVEG---AHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSWLLSLPLFHVSGQGIVWRW  197 (458)
T ss_pred             --cccc---cCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcCCCCccceEEEecCcHhhhhhHHHHHH
Confidence              0000   00012346789999999999999999999999999988888888899999999999999999998877778


Q ss_pred             HhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHHhcCCeee
Q 008535          260 AAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVANFGFNIR  339 (562)
Q Consensus       260 ~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~~~~~~l~  339 (562)
                      +..|+++++.+.   ..+++.+  .+++.+..+|.++..|+.....    ..++|.+++||++++++..+.+.+++.+++
T Consensus       198 l~~G~~v~~~~~---~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~----~~~l~~i~~gG~~~~~~~~~~~~~~g~~~~  268 (458)
T PRK09029        198 LYAGATLVVRDK---QPLEQAL--AGCTHASLVPTQLWRLLDNRSE----PLSLKAVLLGGAAIPVELTEQAEQQGIRCW  268 (458)
T ss_pred             HhCCceEEeCCh---HHHHHHH--hhceeeecChHHHHHHHhcccc----CCcceEEEECCCCCCHHHHHHHHHcCCcEe
Confidence            888998887653   4566666  4789999999999998876432    447999999999999999999988899999


Q ss_pred             ccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhhhhhhc
Q 008535          340 HAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYF  419 (562)
Q Consensus       340 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~  419 (562)
                      +.||+||++...+....              .....+|.+.++. .+++.+              |||+++|+.++.||+
T Consensus       269 ~~YG~tE~~~~~~~~~~--------------~~~~~~G~~~~~~-~~~i~~--------------gel~v~g~~~~~gY~  319 (458)
T PRK09029        269 CGYGLTEMASTVCAKRA--------------DGLAGVGSPLPGR-EVKLVD--------------GEIWLRGASLALGYW  319 (458)
T ss_pred             ccccccccCcceeccCC--------------CCCCCCCCCCCCC-EEEEeC--------------CEEEEecCceeeeee
Confidence            99999999764433210              0112356555544 444431              899999999999999


Q ss_pred             CCchhhHhhhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCCCCCceeEE
Q 008535          420 KNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVA  499 (562)
Q Consensus       420 ~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~  499 (562)
                      ++++.+.....+|||+|||+|++| ||.+++.||.+|+||++|.+|+|.+||+.|.++|.|.+++|++.+++..++.+++
T Consensus       320 ~~~~~~~~~~~~~~~~TGD~~~~~-~g~l~~~gR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a  398 (458)
T PRK09029        320 RQGQLVPLVNDEGWFATRDRGEWQ-NGELTILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVA  398 (458)
T ss_pred             cCccccccccCCCccCCCCcEEEe-CCEEEEecccccceeeCCEEeCHHHHHHHHhcCCCcceEEEEccCCcccCceEEE
Confidence            998877665678999999999999 9999999999999999999999999999999999999999999999988999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhhcc
Q 008535          500 FVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNATAV  558 (562)
Q Consensus       500 ~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~~~  558 (562)
                      +|+...  ..+.++++++++++++.|++|..+.+.+ +|+|++||++|+.|++++++.-+
T Consensus       399 ~v~~~~--~~~~~~l~~~~~~~l~~~~~P~~~~~~~~~p~t~~gKi~r~~L~~~~~~~~~  456 (458)
T PRK09029        399 VVESDS--EAAVVNLAEWLQDKLARFQQPVAYYLLPPELKNGGIKISRQALKEWVAQQLG  456 (458)
T ss_pred             EEEcCc--ccCHHHHHHHHHhhchhccCCeEEEEecccccCcCCCcCHHHHHHHHHhccC
Confidence            998763  3578899999999999999999988665 99999999999999999987643

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=6.4e-61  Score=499.78  Aligned_cols=492  Identities=22%  Similarity=0.287  Sum_probs=395.1

Q ss_pred             eEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEEecCCCCCHHHHHHHHhhC
Q 008535           37 TSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQL  116 (562)
Q Consensus        37 ~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~  116 (562)
                      .|+..+++.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|++++++++..+.+++..+++.+
T Consensus         3 ~~~~~~~~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~   82 (509)
T PRK12406          3 ATIISGDRRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDS   82 (509)
T ss_pred             eEEEECCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhcc
Confidence            46677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCC-CCC-CCCcccccCCCCCCCCchhhhhhcccCccccCCCC
Q 008535          117 EAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPEC-DHY-QPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPN  194 (562)
Q Consensus       117 ~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (562)
                      ++++++++....+.+......         ...++...+. +.. .............+...+.++......    ....
T Consensus        83 ~~~~i~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  149 (509)
T PRK12406         83 GARVLIAHADLLHGLASALPA---------GVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQEP----YDGP  149 (509)
T ss_pred             CCcEEEEccchhhhhhhhhhc---------ccceeecccccccccccccccccccCCCCccCHHHHhcccCc----cCCC
Confidence            999999988766654332211         0111111110 000 000000000011223445444332211    1123


Q ss_pred             CCCCceEEEeccCCCCCCCceEeechhH---HHHHHHHHhhcCCCCCCeeeeecccccchhhHHHHHhHhhceEEEEecc
Q 008535          195 HECDPISVNYTSGSTGDPKGVVYSHRGA---YLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCIRT  271 (562)
Q Consensus       195 ~~~~~a~i~~TSGtTG~PK~v~~t~~~l---~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~~~~~~~~g~~~v~~~~  271 (562)
                      ..+++++++|||||||.||+|.++|.+.   ..........+++..++++++..|++|..+....+.++..|+++++.+.
T Consensus       150 ~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~  229 (509)
T PRK12406        150 PVPQPQSMIYTSGTTGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPR  229 (509)
T ss_pred             CCCCceEEEECCCCCCCCceEEEechhHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEccC
Confidence            4679999999999999999999877653   3333344456788899999999999999888777778888999988888


Q ss_pred             CCHHHHHHHHHhcCeEEEEcchHHHHHHHhccc--cccccccceEEEEEeCCCChHHHHHHHHh-cCCeeeccccCcccc
Q 008535          272 VSAKIIFDSILIHKVTHLCGQPRILNMIANASA--SDQNQLQRKVIIVIAGVLPTIEVLEQVAN-FGFNIRHAYGMTEVL  348 (562)
Q Consensus       272 ~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~--~~~~~l~~l~~i~~~g~~l~~~~~~~~~~-~~~~l~~~YG~tE~~  348 (562)
                      .++..+++.+++++++++.++|.+++.|+....  ....++++++.++.||+++++++.+.+++ ++..+++.||+||++
T Consensus       230 ~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~  309 (509)
T PRK12406        230 FDPEELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESG  309 (509)
T ss_pred             CCHHHHHHHHHHcCCeEEEccHHHHHHHHhCchhhcccCCCCceeEEEEcCCCCCHHHHHHHHHHcCCcEEeeccccccC
Confidence            899999999999999999999999999987543  22345789999999999999999999985 588999999999998


Q ss_pred             CcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhhhh-hhcCCchhhHh
Q 008535          349 GPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVML-GYFKNPKATEE  427 (562)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~-gy~~~~~~~~~  427 (562)
                      .+++.+..           .....+..+|.+.++. .+++++. ++.+++.+  +.|||+++|+.++. +|++++..+..
T Consensus       310 ~~~~~~~~-----------~~~~~~~~~G~~~~~~-~~~i~d~-~~~~~~~g--~~Gel~v~~~~~~~~~y~~~~~~~~~  374 (509)
T PRK12406        310 AVTFATSE-----------DALSHPGTVGKAAPGA-ELRFVDE-DGRPLPQG--EIGEIYSRIAGNPDFTYHNKPEKRAE  374 (509)
T ss_pred             ceEecCcc-----------cccccCCCcCccCCCc-EEEEECC-CCCCCCCC--CceEEEEECCccccccccCCchhccc
Confidence            75543211           0011224567777776 7888885 56777665  67999999998775 99999988888


Q ss_pred             hhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCC
Q 008535          428 AFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGR  507 (562)
Q Consensus       428 ~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~  507 (562)
                      .+.+|||+|||++++|++|.+++.||.+|+||++|.+|+|.+||+.|.++++|.++++++.++...++.+++++++.++.
T Consensus       375 ~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~ik~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~  454 (509)
T PRK12406        375 IDRGGFITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPGA  454 (509)
T ss_pred             ccCCCCeEEccEEEEcCCceEEEeecccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeeeccccCceeEEEEEECCCC
Confidence            88899999999999999999999999999999999999999999999999999999999999988888999999987766


Q ss_pred             CCCHHHHHHHHhccCCCCCCCcEEEee-cccCCCCCcchHHHHhhhhhhh
Q 008535          508 EASPEELVTFCGDELPSCMVPRAIFFE-DIPVNSTGKVQKFVLRGKVNAT  556 (562)
Q Consensus       508 ~~~~~~l~~~~~~~l~~~~~p~~i~~~-~lP~t~~GKv~r~~l~~~~~~~  556 (562)
                      ....+++++++++.++.+++|..+.+. ++|+|++||++|++|++.+...
T Consensus       455 ~~~~~~l~~~l~~~l~~~~~P~~i~~~~~iP~t~~GK~~r~~L~~~~~~~  504 (509)
T PRK12406        455 TLDEADIRAQLKARLAGYKVPKHIEIMAELPREDSGKIFKRRLRDPYWAN  504 (509)
T ss_pred             CCCHHHHHHHHHHhcccCCCCcEEEEeccCCCCCccchhHHHHHHHHHhh
Confidence            667899999999999999999988755 5999999999999999887654

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]

Probab=100.00  E-value=5.2e-62  Score=482.40  Aligned_cols=517  Identities=21%  Similarity=0.245  Sum_probs=406.1

Q ss_pred             CCCCCChHHHHHHHHHHcCCceEEEECC--------eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHH
Q 008535           16 NNVPLTPIDFLERAAHVYGDATSIIYGT--------VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLH   87 (562)
Q Consensus        16 ~~~~~ti~~~l~~~a~~~p~~~a~~~~~--------~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~   87 (562)
                      ...+.|+++.+.+.+..+|+.+++-...        ..+||+|.++++.+++..|.++|+++++.|+|+.-|++||+++.
T Consensus        71 ~~~~~T~~~~f~~~~~~~~~~p~LG~r~~~~~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~~~~~VGIy~~N~pEWiis~  150 (691)
T KOG1256|consen   71 FDGPLTLYEGFRRSVEKSGNGPMLGTRVIVDGKGPYEWLTYKQVYERAENLGSGLRKLGVKEDSKVGIYAFNRPEWIISE  150 (691)
T ss_pred             CCCcccHHHHhhcchhccCCCCceeEEecccCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCceEEEeccCChhhHHhH
Confidence            4577899999999999999999886532        56899999999999999999999999999999999999999999


Q ss_pred             HHhhhccceEEecCCCCCHHHHHHHHhhCCceEEEEec-cchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccc
Q 008535           88 FAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDY-QFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSV  166 (562)
Q Consensus        88 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (562)
                      +||...|.+.|||..+.+++.+.++++.+.+.++|++. +..+.+.+.......    ..+..++.+++.......   .
T Consensus       151 ~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~----~~LK~iI~~~~~~~~~~~---~  223 (691)
T KOG1256|consen  151 MACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSL----PSLKAIIQLDEPSDELKE---K  223 (691)
T ss_pred             HHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccC----ccceeEEEecCCchhhhh---h
Confidence            99999999999999999999999999999999999994 444444443332111    114566666655422110   0


Q ss_pred             cCCCCCCCCchhhhhhcccCccccC-CCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHH---hhc---CCCCCC
Q 008535          167 ANNFPSGSLDYNDLLEMGKADFEMM-QPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQI---SRC---DVRDMP  239 (562)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~---~~~---~~~~~~  239 (562)
                      .......+.+|.++.+.+....... .+..++|.|.|.|||||||.||||++||+|+.+......   ...   .....|
T Consensus       224 ~~~~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~~d  303 (691)
T KOG1256|consen  224 AENNGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAKATVGDD  303 (691)
T ss_pred             hhcCCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhcccccccccCc
Confidence            1111123688999999886555444 578899999999999999999999999999988654321   111   223369


Q ss_pred             eeeeecccccchhhHHHHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccc-------------
Q 008535          240 VFLWTLDMFRCNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASD-------------  306 (562)
Q Consensus       240 ~~l~~~pl~~~~gl~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~-------------  306 (562)
                      ++++.+||.|++....-......|+.+.+.+ -|+..+.+.+++.+||++.++|.+|+++.+.....             
T Consensus       304 v~lSyLPLAHi~er~~~~~~~~~G~~IgF~~-gD~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~  382 (691)
T KOG1256|consen  304 VYLSYLPLAHIFERVVELYTFYIGAKIGFAR-GDILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFN  382 (691)
T ss_pred             eEEEeCcHHHHHHHHHHHhHhhcccEEEEec-CChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            9999999999999988777778888888776 58889999999999999999999999886532100             


Q ss_pred             -------------cccc-------------------cceEEEEEeCCCChHHHHHHHH-hcCCeeeccccCccccCcccc
Q 008535          307 -------------QNQL-------------------QRKVIIVIAGVLPTIEVLEQVA-NFGFNIRHAYGMTEVLGPAIV  353 (562)
Q Consensus       307 -------------~~~l-------------------~~l~~i~~~g~~l~~~~~~~~~-~~~~~l~~~YG~tE~~~~~~~  353 (562)
                                   +...                   ..+|.+++|++|++.++...++ .+|++++++||+|||++.++.
T Consensus       383 ~A~~~k~~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g~~v~eGYGlTEts~g~~~  462 (691)
T KOG1256|consen  383 FAMAYKLEHRLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALGCRVLEGYGLTETSAGTTL  462 (691)
T ss_pred             HHHHHHHHHHhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcCceeeecccccccCCceEe
Confidence                         0001                   2688999999999999999999 568999999999999866555


Q ss_pred             cccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhhhhhhcCCchhhHhhh-ccc
Q 008535          354 RQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAF-RNG  432 (562)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g  432 (562)
                      ....            ......+|.|.++. .++++|+.+.+-.+.+.  .|||+|+|+++|+|||++|+.|.+.| .||
T Consensus       463 ~~~~------------d~~lgsvG~p~p~~-~vKL~dvpe~ny~a~~~--~GEIcirG~~Vf~GYyK~p~~T~e~ideDG  527 (691)
T KOG1256|consen  463 TLPG------------DNVLGSVGPPVPGN-EVKLVDVPEMNYDADGS--KGEICVRGPNVFMGYYKDPEKTAEAIDEDG  527 (691)
T ss_pred             ccCC------------CCCCCCcCCcccCc-eEEEechHHhCcCcCCC--cceEEEecchhceeccCChHHHhhhhcccc
Confidence            4321            11446778888887 88888876655555553  49999999999999999999999999 699


Q ss_pred             eeeeCceeEEcCCCcEEEeccccceee-cCCeEechHHHHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCCCCC-
Q 008535          433 WYHTGDLAVRNPDGYVQMKDRRKDIII-SGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREAS-  510 (562)
Q Consensus       433 ~~~TGD~~~~~~~g~l~~~GR~~d~i~-~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~~-  510 (562)
                      |++|||+|+|+++|.++++||.+++|| ..|++|.|..||++..+.+.|.+.+|.+....   ..++++|++++..... 
T Consensus       528 WLhTGDiG~~~p~G~l~IidRkK~ifklaqGEyVaPe~IEniy~~~~~V~qi~V~g~s~~---~~LvaiVvpd~e~~~~~  604 (691)
T KOG1256|consen  528 WLHTGDIGEWDPNGTLKIIDRKKNIFKLAQGEYVAPEKIENIYKRSLPVQQIFVLGDSLR---SFLVAIVVPDPEVLKSW  604 (691)
T ss_pred             ccccccceeECCCccEEEEecccceEEcCCCCccChHHHHHHHhcCCceEEEEEECCcch---hcEEEEEecChhhchhh
Confidence            999999999999999999999999999 89999999999999999999999999975543   4589999986542110 


Q ss_pred             ------HHHHHHHH-----------------h-ccCCCCCCCcEEEeeccc-------CCCCCcchHHHHhhhhhhhcc
Q 008535          511 ------PEELVTFC-----------------G-DELPSCMVPRAIFFEDIP-------VNSTGKVQKFVLRGKVNATAV  558 (562)
Q Consensus       511 ------~~~l~~~~-----------------~-~~l~~~~~p~~i~~~~lP-------~t~~GKv~r~~l~~~~~~~~~  558 (562)
                            ..+..++|                 + ..+..+.....|.+.+-|       +||+-|+.|..+.+.|.++-+
T Consensus       605 a~~~~~~~~~eelc~n~~~k~~vl~el~~~~~~~~l~~fe~vk~v~l~~~~FsienglltPTlK~KR~~l~~~yk~~Id  683 (691)
T KOG1256|consen  605 AAKDGVKGTFEELCRNLDVKEAVLSELVKVGKENGLKGFEQVKKVHLLPDPFSIENGLLTPTLKIKRPQLLKYYKKQID  683 (691)
T ss_pred             HHHccCchhHHHHhcChhhHHHHHHHHHHHHhhhhccChhhEeeEEEecccccccCCccchhhhhhhHHHHHHHHHHHH
Confidence                  01111111                 1 124455555666665533       688999999999999988753

>PLN03051 acyl-activating enzyme; Provisional

Probab=100.00  E-value=1.7e-61  Score=501.08  Aligned_cols=455  Identities=18%  Similarity=0.187  Sum_probs=344.0

Q ss_pred             cCCcHHHHHHHHHhhhccceEEecCCCCCHHHHHHHHhhCCceEEEEeccc------hHHHHHHHhhcCCCCcCCCCCce
Q 008535           77 APNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQF------VEVVQNALDILSPNHKCDKAPLL  150 (562)
Q Consensus        77 ~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~------~~~~~~~~~~~~~~~~~~~~~~~  150 (562)
                      ++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+++..      .+.+........       ...+
T Consensus         1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-------~~~i   73 (499)
T PLN03051          1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAP-------AKAI   73 (499)
T ss_pred             CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhccc-------ceEE
Confidence            589999999999999999999999999999999999999999999998643      122222111100       1111


Q ss_pred             eccCCCCCCCCCcccccCCCCCCCCchhhhhhcccC------ccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHH
Q 008535          151 VTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKA------DFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYL  224 (562)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~  224 (562)
                      +........       ......+..++.++......      .........++|+++|+|||||||.||||.+||+++..
T Consensus        74 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~  146 (499)
T PLN03051         74 VLPAAGEPV-------AVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLR  146 (499)
T ss_pred             EEeccCccc-------CCccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHH
Confidence            111100000       00000112344544421110      00011112458999999999999999999999999877


Q ss_pred             HHHHHHhhcCCCCCCeeeeecccccchhhHHHHHhHhhceEEEEec-cCCHHHHHHHHHhcCeEEEEcchHHHHHHHhcc
Q 008535          225 NSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCIR-TVSAKIIFDSILIHKVTHLCGQPRILNMIANAS  303 (562)
Q Consensus       225 ~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~~~~~~~~g~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~  303 (562)
                      +.......+++..+|++++.+|++|.+++...+.++..|+++++.+ .+++..+++.|+++++|++.++|++++.|++..
T Consensus       147 ~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~  226 (499)
T PLN03051        147 CASDGWAHMDIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTG  226 (499)
T ss_pred             HHHHHHHhcCCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcC
Confidence            6666666778889999999999999999887788889999998886 478899999999999999999999999998754


Q ss_pred             c--cccccccceEEEEEeCCCChHHHHHHHHh-c--CCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCc
Q 008535          304 A--SDQNQLQRKVIIVIAGVLPTIEVLEQVAN-F--GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGL  378 (562)
Q Consensus       304 ~--~~~~~l~~l~~i~~~g~~l~~~~~~~~~~-~--~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  378 (562)
                      .  ....+++++|.+++||++++++..+++++ +  +.++++.||+||+++.+.....  .         .......+|.
T Consensus       227 ~~~~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~--~---------~~~~~~~~G~  295 (499)
T PLN03051        227 AFAMEGLDWSKLRVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTL--L---------QPQAPGAFST  295 (499)
T ss_pred             ccccccCCchhheEEEecCCCCCHHHHHHHHHhccccceeEeeeccccccceeecccc--c---------CCCCCccccC
Confidence            3  33456789999999999999998887775 3  4789999999998654332110  0         0111245777


Q ss_pred             cccccccceecccCCcccccCCCCceeEEEEcchhh--hhhhcCCchhhHhhhccc----------eeeeCceeEEcCCC
Q 008535          379 NNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTV--MLGYFKNPKATEEAFRNG----------WYHTGDLAVRNPDG  446 (562)
Q Consensus       379 ~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~--~~gy~~~~~~~~~~~~~g----------~~~TGD~~~~~~~g  446 (562)
                      |.++. .++|+|. ++++++.|.++.|||+++|+.+  +.||++++. + ..|.+|          ||+|||+|++|+||
T Consensus       296 p~~~~-~~~ivd~-~g~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~~-~-~~~~~g~~~~~~~~~~~~~TGDlg~~d~dG  371 (499)
T PLN03051        296 ASLGT-RFVLLND-NGVPYPDDQPCVGEVALAPPMLGASDRLLNADH-D-KVYYKGMPMYGSKGMPLRRHGDIMKRTPGG  371 (499)
T ss_pred             CCCCc-eEEEECC-CCCCCCCCCCcceEEEEecCcCCCCccccCCcc-c-ceeeecCCccccCCcceeecCCeEEECCCC
Confidence            77777 7888885 6777877654679999999976  579997653 3 234344          68999999999999


Q ss_pred             cEEEeccccceeecCCeEechHHHHHHHhc-CCCceeEEEEeeeCCCCC-ceeEEEE---EeCCCC-CCCHHHHHHHH--
Q 008535          447 YVQMKDRRKDIIISGAEIISSLEVEAVLLS-NPKVLEAAVVGKVDDQLK-EVPVAFV---KLKEGR-EASPEELVTFC--  518 (562)
Q Consensus       447 ~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~-~~~v~~~~v~~~~~~~~~-~~~v~~v---~~~~~~-~~~~~~l~~~~--  518 (562)
                      ++++.||.||+||++|.+|+|.|||++|.+ ||.|.+++|++++++..+ +.++++|   +++++. ..+.++++++|  
T Consensus       372 ~l~~~gR~~d~ik~~G~~v~p~EIE~~l~~~~p~V~~aavvg~~d~~~g~~~~~a~v~~~v~~~~~~~~~~~~l~~~~~~  451 (499)
T PLN03051        372 YFCVQGRADDTMNLGGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGGPELLVIFLVLGEEKKGFDQARPEALQKKFQE  451 (499)
T ss_pred             cEEEEeccCCEEeeCCEECCHHHHHHHHHhcCCCcceEEEEEecCCCCCceEEEEEEEcceecccccccchHHHHHHHHH
Confidence            999999999999999999999999999996 999999999999999888 6888888   766654 34566777665  


Q ss_pred             --hccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhhcccc
Q 008535          519 --GDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNATAVGW  560 (562)
Q Consensus       519 --~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~~~~~  560 (562)
                        +++++.+..|..+.+++ ||+|++||++|++|++.+.+..++-
T Consensus       452 ~l~~~l~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~~  496 (499)
T PLN03051        452 AIQTNLNPLFKVSRVKIVPELPRNASNKLLRRVLRDQLKKELSGR  496 (499)
T ss_pred             HHHhhcCCccCCceEEEcCCCCCCCCccHHHHHHHHHHHHhhccc
Confidence              45577766665666554 9999999999999999888776654

>PRK13391 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.6e-60  Score=496.68  Aligned_cols=492  Identities=23%  Similarity=0.299  Sum_probs=395.0

Q ss_pred             HHHHHHHcCCceEEEE--CCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEEecCCC
Q 008535           26 LERAAHVYGDATSIIY--GTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTR  103 (562)
Q Consensus        26 l~~~a~~~p~~~a~~~--~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~  103 (562)
                      ...+++.+|+++|+.+  .+..+||.||.+++.++|++|.+.|+++|++|+++++|+++++++++||+++|++++++++.
T Consensus         3 ~~~~a~~~p~~~a~~~~~~~~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~l~~~   82 (511)
T PRK13391          3 PGIHAQTTPDKPAVIMASTGEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSH   82 (511)
T ss_pred             hhhhHhhCCCceEEEecCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEEeccccc
Confidence            3567889999999987  46789999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCchhhhhhc
Q 008535          104 LDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEM  183 (562)
Q Consensus       104 ~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (562)
                      ++.+++.++++.++++.++++....+.+.........      ....+.+......            .+...+.+....
T Consensus        83 ~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~------------~~~~~~~~~~~~  144 (511)
T PRK13391         83 LTPAEAAYIVDDSGARALITSAAKLDVARALLKQCPG------VRHRLVLDGDGEL------------EGFVGYAEAVAG  144 (511)
T ss_pred             cCHHHHHHHHhccCCcEEEEchhhHHHHHHHHhcCCC------ceEEEEecCCCCC------------cccccHHHHhcC
Confidence            9999999999999999999998776665544332211      1111222111000            011222222221


Q ss_pred             ccCccccCCCCCCCCceEEEeccCCCCCCCceEee--chhHHH---HHHHHHhhcCCCCCCeeeeecccccchhhHHHHH
Q 008535          184 GKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYS--HRGAYL---NSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWA  258 (562)
Q Consensus       184 ~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t--~~~l~~---~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~~~~  258 (562)
                      .+.    ....+.++.++++|||||||.||+|.++  |.++..   ........+++...+++++..|++|.+++...+.
T Consensus       145 ~~~----~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~  220 (511)
T PRK13391        145 LPA----TPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQRAVML  220 (511)
T ss_pred             CCC----CCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeEEEcCCHHHHHHHHHHHH
Confidence            111    1112344678999999999999999964  555432   2233445667888999999999999999888888


Q ss_pred             hHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhcccc--ccccccceEEEEEeCCCChHHHHHHHHh-cC
Q 008535          259 MAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASAS--DQNQLQRKVIIVIAGVLPTIEVLEQVAN-FG  335 (562)
Q Consensus       259 ~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~l~~l~~i~~~g~~l~~~~~~~~~~-~~  335 (562)
                      ++..|+++++.+.+++..+++.++++++|++.++|.++..+......  ....+++++.+++||+++++++.+.+++ ++
T Consensus       221 ~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~g  300 (511)
T PRK13391        221 VIRLGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDKYDLSSLEVAIHAAAPCPPQVKEQMIDWWG  300 (511)
T ss_pred             HHHcCceEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhcccCCccceeEEEEccCCCCHHHHHHHHHHcC
Confidence            89999999998889999999999999999999999999988765432  2335789999999999999999999884 68


Q ss_pred             CeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhhh
Q 008535          336 FNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVM  415 (562)
Q Consensus       336 ~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~  415 (562)
                      ..+++.||+||+++++......           .......+|.+.++  .+++++. ++.+++.|  +.|||+++|+ ++
T Consensus       301 ~~v~~~YG~tE~~~~~~~~~~~-----------~~~~~~~vG~~~~g--~~~i~d~-~~~~~~~g--~~Gel~~~g~-~~  363 (511)
T PRK13391        301 PIIHEYYAATEGLGFTACDSEE-----------WLAHPGTVGRAMFG--DLHILDD-DGAELPPG--EPGTIWFEGG-RP  363 (511)
T ss_pred             CceeeeeccccccceEEecCcc-----------ccccCCCcCCcccc--eEEEECC-CCCCCCCC--CceEEEEecC-cc
Confidence            8899999999998754432100           01122456766665  3667764 56666655  6799999999 88


Q ss_pred             hhhcCCchhhHhhhc--cceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCCCC
Q 008535          416 LGYFKNPKATEEAFR--NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQL  493 (562)
Q Consensus       416 ~gy~~~~~~~~~~~~--~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~  493 (562)
                      .||+++++.+...|.  ++||+|||+|+++++|.+++.||.+|+++++|.+++|.+||++|.++|.|.+++|++.++...
T Consensus       364 ~gy~~~~~~~~~~~~~~~~w~~TGD~g~~~~~g~l~~~gR~~~~i~~~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~  443 (511)
T PRK13391        364 FEYLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDL  443 (511)
T ss_pred             eEEcCChhHhHHhhccCCCEEecCCEEEECCCccEEEeccCCCEEEeCCEEECHHHHHHHHHhCCCcceEEEEecCCccc
Confidence            899999998888775  389999999999999999999999999999999999999999999999999999999999888


Q ss_pred             CceeEEEEEeCCCCC---CCHHHHHHHHhccCCCCCCCcEEEee-cccCCCCCcchHHHHhhhhhhh
Q 008535          494 KEVPVAFVKLKEGRE---ASPEELVTFCGDELPSCMVPRAIFFE-DIPVNSTGKVQKFVLRGKVNAT  556 (562)
Q Consensus       494 ~~~~v~~v~~~~~~~---~~~~~l~~~~~~~l~~~~~p~~i~~~-~lP~t~~GKv~r~~l~~~~~~~  556 (562)
                      ++.+++++++.++..   ...+++.++++++++.+++|..+.+. ++|+|++||++|+.|++.|.+.
T Consensus       444 g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~gKv~r~~l~~~~~~~  510 (511)
T PRK13391        444 GEEVKAVVQPVDGVDPGPALAAELIAFCRQRLSRQKCPRSIDFEDELPRLPTGKLYKRLLRDRYWGN  510 (511)
T ss_pred             CceeEEEEEECCCCCcccchHHHHHHHHHhhcccCcCCcEEEEeecCCCCCccceeHHHHHHHhhcc
Confidence            888999888765432   23478999999999999999998865 5999999999999999988653

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.5e-60  Score=496.33  Aligned_cols=484  Identities=24%  Similarity=0.333  Sum_probs=391.5

Q ss_pred             ceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEEecCCCCCHHHHHHHHhh
Q 008535           36 ATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQ  115 (562)
Q Consensus        36 ~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~  115 (562)
                      ++++.+.+..+||.||.+.+.++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++.
T Consensus         2 ~~~~~~~~~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~   81 (502)
T PRK08276          2 AVIMAPSGEVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDD   81 (502)
T ss_pred             ceEecCCCcEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhc
Confidence            35677788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCchhhhhhcccCccccCCCCC
Q 008535          116 LEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNH  195 (562)
Q Consensus       116 ~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (562)
                      +++++++++....+.+..........     ...+...+...              .....+.+.......    .....
T Consensus        82 ~~~~~ii~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~--------------~~~~~~~~~~~~~~~----~~~~~  138 (502)
T PRK08276         82 SGAKVLIVSAALADTAAELAAELPAG-----VPLLLVVAGPV--------------PGFRSYEEALAAQPD----TPIAD  138 (502)
T ss_pred             CCCCEEEEccchhhHHHHHhhhcccc-----ccEEEEeCCCC--------------CccccHHHHHhcCCC----CCCCC
Confidence            99999999988776665443322110     12222221100              111233333322111    11234


Q ss_pred             CCCceEEEeccCCCCCCCceEeechhHHHHH------HHHHhhcCCCCCCeeeeecccccchhhHHHHHhHhhceEEEEe
Q 008535          196 ECDPISVNYTSGSTGDPKGVVYSHRGAYLNS------LAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCI  269 (562)
Q Consensus       196 ~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~------~~~~~~~~~~~~~~~l~~~pl~~~~gl~~~~~~~~~g~~~v~~  269 (562)
                      .++.++++|||||||.||+|.++|.++....      ............+++++..|++|.+++...+.++..|+++++.
T Consensus       139 ~~~~a~i~~TSGtTG~PK~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~  218 (502)
T PRK08276        139 ETAGADMLYSSGTTGRPKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVM  218 (502)
T ss_pred             CCcceEEEECCCCCCCCceEEEccCCcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEc
Confidence            5678999999999999999999988754322      1122222335678899999999999988888888899999888


Q ss_pred             ccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhcccc--ccccccceEEEEEeCCCChHHHHHHHHh-cCCeeeccccCcc
Q 008535          270 RTVSAKIIFDSILIHKVTHLCGQPRILNMIANASAS--DQNQLQRKVIIVIAGVLPTIEVLEQVAN-FGFNIRHAYGMTE  346 (562)
Q Consensus       270 ~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~l~~l~~i~~~g~~l~~~~~~~~~~-~~~~l~~~YG~tE  346 (562)
                      +.+++..+++.++++++|++.++|.+++.+++....  ...+++++|.++++|++++.++.+.+.+ ++..+++.||+||
T Consensus       219 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~g~~~~~~~~~~~~~~~~~~~~~~yG~tE  298 (502)
T PRK08276        219 EKFDAEEALALIERYRVTHSQLVPTMFVRMLKLPEEVRARYDVSSLRVAIHAAAPCPVEVKRAMIDWWGPIIHEYYASSE  298 (502)
T ss_pred             CCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCccccCCCCCcccceEEEecCCCCCHHHHHHHHHHhCcHhhhhccccc
Confidence            889999999999999999999999999999876532  2345789999999999999999999984 5888999999999


Q ss_pred             ccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhhhhhhcCCchhhH
Q 008535          347 VLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATE  426 (562)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~  426 (562)
                      ++++++.....           .......+|.+. .. .+++.+. .+.+++.+  +.|||+++|+.++.||++++..+.
T Consensus       299 ~~~~~~~~~~~-----------~~~~~~~~G~~~-~~-~~~i~d~-~~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~  362 (502)
T PRK08276        299 GGGVTVITSED-----------WLAHPGSVGKAV-LG-EVRILDE-DGNELPPG--EIGTVYFEMDGYPFEYHNDPEKTA  362 (502)
T ss_pred             ccceeEecCcc-----------ccccCCCcceec-cc-EEEEECC-CCCCCcCC--CceEEEEECCCccchhcCCHHHHH
Confidence            98765543210           011223567776 44 7788774 56666655  779999999999999999999998


Q ss_pred             hhhcc-ceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCC
Q 008535          427 EAFRN-GWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKE  505 (562)
Q Consensus       427 ~~~~~-g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~  505 (562)
                      ..|.+ |||+|||+++++++|.+++.||.||+++++|.++++.+||..++++|+|.++++++..++..++.+++++++.+
T Consensus       363 ~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~iE~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~  442 (502)
T PRK08276        363 AARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPAD  442 (502)
T ss_pred             HHhcCCCceeecceEEEcCCcCEEEeccCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeCCCcccCceEEEEEEECC
Confidence            88865 99999999999999999999999999999999999999999999999999999999999988999999999876


Q ss_pred             CCCCC---HHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhhcc
Q 008535          506 GREAS---PEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNATAV  558 (562)
Q Consensus       506 ~~~~~---~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~~~  558 (562)
                      +....   .+++.++++++++.+++|..+++++ ||+|++||++|++|++.|-+..+
T Consensus       443 ~~~~~~~~~~~i~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~~~  499 (502)
T PRK08276        443 GADAGDALAAELIAWLRGRLAHYKCPRSIDFEDELPRTPTGKLYKRRLRDRYWEGRQ  499 (502)
T ss_pred             CCCCChhhHHHHHHHHHhhccCCCCCcEEEEecCCCCCcccchhHHHHHHHHHhhhh
Confidence            54333   3489999999999999999988655 99999999999999999776543

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=2.6e-61  Score=596.73  Aligned_cols=490  Identities=21%  Similarity=0.187  Sum_probs=408.5

Q ss_pred             CCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEE
Q 008535           19 PLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLS   98 (562)
Q Consensus        19 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v   98 (562)
                      ..+++++|+++++++|+++|+++.+.++||+||.++++++|+.|.+.|+++|++|+++++++++++++++||+++|++++
T Consensus      3719 ~~~~~~~~~~~~~~~p~~~Av~~~~~~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~lavlkaG~a~v 3798 (4334)
T PRK05691       3719 EQSYVRLFEAQVAAHPQRIAASCLDQQWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMIVGSFKAGAGYL 3798 (4334)
T ss_pred             ccCHHHHHHHHHHhCCCceEEEcCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEe
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCchh
Q 008535           99 ALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYN  178 (562)
Q Consensus        99 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (562)
                      |++|.++.+++.++++.+++++++++....+........+....    .+.++..++..                     
T Consensus      3799 pld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~--------------------- 3853 (4334)
T PRK05691       3799 PLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCAN----RPRLLVWEEVQ--------------------- 3853 (4334)
T ss_pred             CCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhccccccc----ccceeeecccc---------------------
Confidence            99999999999999999999999999876554433322211100    11111111100                     


Q ss_pred             hhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHHHHH
Q 008535          179 DLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWA  258 (562)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~~~~  258 (562)
                         ..............+++.+||+|||||||.||||+++|+++.....+....+++.+.|+++...++++..++...+.
T Consensus      3854 ---~~~~~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~s~~fd~s~~~~~~ 3930 (4334)
T PRK05691       3854 ---AGEVASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYLALSEADVIAQTASQSFDISVWQFLA 3930 (4334)
T ss_pred             ---cccccccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhcCCCccceEEEecCCchhHHHHHHHH
Confidence               00000011112346789999999999999999999999999999999889999999999999999999999999999


Q ss_pred             hHhhceEEEEecc---CCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHHhc-
Q 008535          259 MAAVGGINVCIRT---VSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVANF-  334 (562)
Q Consensus       259 ~~~~g~~~v~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~~~-  334 (562)
                      +++.|+++++.+.   .++..+.+.++++++|++..+|++++.++...   ...++++|.+++|||+++.+..+.|.+. 
T Consensus      3931 ~l~~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~---~~~~~~lr~~~~gGe~l~~~~~~~~~~~~ 4007 (4334)
T PRK05691       3931 APLFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAED---RQALDGLRWMLPTGEAMPPELARQWLQRY 4007 (4334)
T ss_pred             HHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhc---cccCCCceEEEecCCcCCHHHHHHHHHhC
Confidence            9999999998764   57899999999999999999999999887542   2457889999999999999999998743 


Q ss_pred             -CCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchh
Q 008535          335 -GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANT  413 (562)
Q Consensus       335 -~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~  413 (562)
                       ++++++.||+|||+..++........        .......+|.|.++. .+.|++. .++++|.|  ..|||+|+|+.
T Consensus      4008 ~~~~l~n~YG~TE~t~~~~~~~~~~~~--------~~~~~~~iG~p~~~~-~~~v~d~-~~~~~p~g--~~GEL~i~G~~ 4075 (4334)
T PRK05691       4008 PQIGLVNAYGPAECSDDVAFFRVDLAS--------TRGSYLPIGSPTDNN-RLYLLDE-ALELVPLG--AVGELCVAGTG 4075 (4334)
T ss_pred             CCCeEEeCccCccceeEEEEEEccccc--------ccCCcCCCCCccCCC-EEEEECC-CCCCCCCC--CceEEEEeccc
Confidence             78999999999998766544321110        011124578887776 7778774 67778777  77999999999


Q ss_pred             hhhhhcCCchhhHhhhc--------cceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEE
Q 008535          414 VMLGYFKNPKATEEAFR--------NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAV  485 (562)
Q Consensus       414 ~~~gy~~~~~~~~~~~~--------~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v  485 (562)
                      +++||+++|+.|.++|.        ++||||||+|++++||.++++||.|++||++|.+|.+.|||+.|.++|+|.+++|
T Consensus      4076 v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~riel~eIE~~l~~~~~v~~a~v 4155 (4334)
T PRK05691       4076 VGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGVLEYVGRIDHQVKIRGYRIELGEIEARLHEQAEVREAAV 4155 (4334)
T ss_pred             ccccccCCcccchhhcccCCCCCCCceeeccCcceeecCCCcEEEecccCCcEEeceEEecHHHHHHHHHhCCCccEEEE
Confidence            99999999999999982        4699999999999999999999999999999999999999999999999999988


Q ss_pred             EeeeCCCCCceeEEEEEeCCCCCC---CHHHHHHHHhccCCCCCCCcEEEee-cccCCCCCcchHHHHhhh
Q 008535          486 VGKVDDQLKEVPVAFVKLKEGREA---SPEELVTFCGDELPSCMVPRAIFFE-DIPVNSTGKVQKFVLRGK  552 (562)
Q Consensus       486 ~~~~~~~~~~~~v~~v~~~~~~~~---~~~~l~~~~~~~l~~~~~p~~i~~~-~lP~t~~GKv~r~~l~~~  552 (562)
                      +... ...++.++++++.......   ..+++++++++.||.|++|..+... .||+|+|||++|++|++.
T Consensus      4156 ~~~~-~~~~~~l~a~~~~~~~~~~~~~~~~~l~~~l~~~Lp~ymvP~~~~~~~~lP~t~~GKidr~~L~~~ 4225 (4334)
T PRK05691       4156 AVQE-GVNGKHLVGYLVPHQTVLAQGALLERIKQRLRAELPDYMVPLHWLWLDRLPLNANGKLDRKALPAL 4225 (4334)
T ss_pred             EEec-CCCCcEEEEEEeCCcccccchHHHHHHHHHHHhhCChhhcCcceeecccCCCCCCCcccHhhcCCC
Confidence            6554 3456788999987654322   2468999999999999999988754 599999999999999876

>PRK07868 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.4e-60  Score=523.82  Aligned_cols=493  Identities=15%  Similarity=0.143  Sum_probs=375.4

Q ss_pred             CCCCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccce
Q 008535           17 NVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAV   96 (562)
Q Consensus        17 ~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~   96 (562)
                      ....|+.++|+++++.+|+++|+++.++++||+||.++++++|+.|.+.|+++||+|+|+++|+++++++++||+++|++
T Consensus       444 ~~~~sl~~ll~~~a~~~pd~~Al~~~~~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~lA~~~aGav  523 (994)
T PRK07868        444 HTRISLGRIIAEQARDAPKGEFLLFDGRVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAIAALSRLGAV  523 (994)
T ss_pred             CCCccHHHHHHHHHHHCCCCeEEEeCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCE
Confidence            45568999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCc
Q 008535           97 LSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLD  176 (562)
Q Consensus        97 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (562)
                      ++|++|.   +++.++++.++++++|++.+..+.+...            ...++.++......   .....  ......
T Consensus       524 ~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~~------------~~~iiv~~~~~~~~---~~~~~--~~~~~~  583 (994)
T PRK07868        524 AVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQL------------PGRVLVLGGGESRD---LDLPD--DADVID  583 (994)
T ss_pred             EEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHhc------------CceEEEecCCcccc---ccCCc--chhhhh
Confidence            9999985   5789999999999999987665543221            12233332211000   00000  000011


Q ss_pred             hhhhhhcccCccc--cCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhH
Q 008535          177 YNDLLEMGKADFE--MMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWC  254 (562)
Q Consensus       177 ~~~~~~~~~~~~~--~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~  254 (562)
                      +.+..........  ...+..++|+++|+|| ||||.||++.++|.+...........+.+..+|++++.+|++|.+++.
T Consensus       584 ~~~~~~~~~~~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~~l~~~d~~L~~~Pl~h~~gl~  662 (994)
T PRK07868        584 MEKIDPDAVELPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAAALDRRDTVYCLTPLHHESGLL  662 (994)
T ss_pred             hhhcCcccccCCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhcCCCCCCeEEEecChHHHhHHH
Confidence            1111110000000  0112235799999998 688888888888877665555555667888999999999999999998


Q ss_pred             HHHHhHhhceEEEE-eccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHHh
Q 008535          255 CTWAMAAVGGINVC-IRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVAN  333 (562)
Q Consensus       255 ~~~~~~~~g~~~v~-~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~~  333 (562)
                      ..+.+++.+++.++ .+.++++.+++.|+++++|+++.+|++++.|++........++++|.++.  +.++++..+.+.+
T Consensus       663 ~~l~~~l~gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~~~~~~slr~~~g--~gl~~~l~~~~~~  740 (994)
T PRK07868        663 VSLGGAVVGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFVLHGNHPVRLFIG--SGMPTGLWERVVE  740 (994)
T ss_pred             HHHHHHhccceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCCccCCCCceEEEec--CCCCHHHHHHHHH
Confidence            76666666665554 45689999999999999999999999999998865444456778998763  3488999988884


Q ss_pred             -cC-CeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecc----------cCCc--ccccC
Q 008535          334 -FG-FNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQ----------QNTM--KSVPH  399 (562)
Q Consensus       334 -~~-~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~----------~~~~--~~~~~  399 (562)
                       ++ .++++.||+||++......   .           .....++|.|.++...++|.+          .+++  +.++ 
T Consensus       741 ~~~~~~l~~~YG~TE~~~~~~~~---~-----------~~~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~-  805 (994)
T PRK07868        741 AFAPAHVVEFFATTDGQAVLANV---S-----------GAKIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAE-  805 (994)
T ss_pred             HhCchheeeeeeccccccccccc---C-----------CCCCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcC-
Confidence             54 7899999999986432211   0           012245677777653344431          1233  2333 


Q ss_pred             CCCceeEEEEcchhhhhhhcCCchhhHh--hh--ccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHh
Q 008535          400 DGKTLGEVMFRANTVMLGYFKNPKATEE--AF--RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLL  475 (562)
Q Consensus       400 ~~~~~Gel~v~~~~~~~gy~~~~~~~~~--~~--~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~  475 (562)
                       .++.|||+++++..    + ++..+..  .|  .+|||+|||+|++|+||+++|+||.||+||++|.+|+|.+||++|.
T Consensus       806 -~ge~Gel~~~~~~~----~-~p~~t~~~~~~~~~dgw~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~EIE~~L~  879 (994)
T PRK07868        806 -VNEVGVLLARARGP----I-DPTASVKRGVFAPADTWISTEYLFRRDDDGDYWLVDRRGSVIRTARGPVYTEPVTDALG  879 (994)
T ss_pred             -CCCceEEEEecCCC----C-ChhhhhHhcccccCCEEEeccceEEEcCCCCEEEeccCCCEEEeCCceEcHHHHHHHHh
Confidence             34789999999753    2 2333222  23  3799999999999999999999999999999999999999999999


Q ss_pred             cCCCceeEEEEeeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhh
Q 008535          476 SNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVN  554 (562)
Q Consensus       476 ~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~  554 (562)
                      +||.|.+++|++++++. ++.++++|++.++...+.++|++++++ ++.|++|+.+++++ ||+|++||++|++|++.-.
T Consensus       880 ~hp~V~~aaVvg~~d~~-~~~~~a~Vv~~~~~~~~~~~L~~~l~~-l~~y~vP~~i~~v~~lP~T~sGKi~r~~L~~~~l  957 (994)
T PRK07868        880 RIGGVDLAVTYGVEVGG-RQLAVAAVTLRPGAAITAADLTEALAS-LPVGLGPDIVHVVPEIPLSATYRPTVSALRAAGI  957 (994)
T ss_pred             cCCCeeEEEEEeecCCC-CceEEEEEEeCCCCcCCHHHHHHHHHh-CCCCcCCeEEEEeCCCCCCccccEehHHHHhcCC
Confidence            99999999999998875 678899999888777788999999986 99999999988765 9999999999999987754


Q ss_pred             h
Q 008535          555 A  555 (562)
Q Consensus       555 ~  555 (562)
                      .
T Consensus       958 p  958 (994)
T PRK07868        958 P  958 (994)
T ss_pred             C
Confidence            3

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=5.5e-61  Score=593.82  Aligned_cols=485  Identities=20%  Similarity=0.210  Sum_probs=408.5

Q ss_pred             CCCCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccce
Q 008535           17 NVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAV   96 (562)
Q Consensus        17 ~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~   96 (562)
                      ....++.++|+++++.+|+++|+.+.+.++||+||.+++.++|+.|.+.|+++|++|+++++++++++++++||+++|++
T Consensus      1128 ~~~~~l~~~~~~~a~~~p~~~Al~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~lailkaG~~ 1207 (4334)
T PRK05691       1128 PAQAWLPELLNEQARQTPERIALVWDGGSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLLAILKAGGA 1207 (4334)
T ss_pred             CccCCHHHHHHHHHHhCCCCeEEEECCceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCE
Confidence            34568999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCc
Q 008535           97 LSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLD  176 (562)
Q Consensus        97 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (562)
                      ++|++|.++.+++.++++.+++++++++......+....           ....+.++...                   
T Consensus      1208 ~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~~~-----------~~~~~~~~~~~------------------- 1257 (4334)
T PRK05691       1208 YVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQAE-----------GVSAIALDSLH------------------- 1257 (4334)
T ss_pred             EEecCcCChHHHHHHHHHhcCCCEEEecchhhhhccccc-----------CceEEeecccc-------------------
Confidence            999999999999999999999999999876543321100           00111111000                   


Q ss_pred             hhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHHH
Q 008535          177 YNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCT  256 (562)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~~  256 (562)
                      ....    . .........++++++++|||||||.||||.++|+++.....+....+++.++++++...|++|..++...
T Consensus      1258 ~~~~----~-~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~s~~~~ 1332 (4334)
T PRK05691       1258 LDSW----P-SQAPGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATYALDDSDVLMQKAPISFDVSVWEC 1332 (4334)
T ss_pred             cccc----C-CCCCCCCCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHH
Confidence            0000    0 0001112456899999999999999999999999999988888888999999999999999999999889


Q ss_pred             HHhHhhceEEEEec---cCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHHh
Q 008535          257 WAMAAVGGINVCIR---TVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVAN  333 (562)
Q Consensus       257 ~~~~~~g~~~v~~~---~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~~  333 (562)
                      +.++..|+++++.+   ..++..+.+.++++++|++..+|++++.|.....  ...++++|.+++|||+++++..+.|.+
T Consensus      1333 ~~~L~~G~~l~i~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~--~~~~~~lr~~~~gGe~l~~~~~~~~~~ 1410 (4334)
T PRK05691       1333 FWPLITGCRLVLAGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPL--AAACTSLRRLFSGGEALPAELRNRVLQ 1410 (4334)
T ss_pred             HHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCcc--cccCCcccEEEEeecCCCHHHHHHHHH
Confidence            99999999999875   3689999999999999999999999999986542  246789999999999999999999874


Q ss_pred             -c-CCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcc
Q 008535          334 -F-GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRA  411 (562)
Q Consensus       334 -~-~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~  411 (562)
                       + +.++++.||+||++..++.......          ......+|.|.++. .++|+|. .++.++.|  +.|||+|+|
T Consensus      1411 ~~~~~~l~n~YG~TE~~~~~~~~~~~~~----------~~~~~~iG~p~~~~-~~~i~d~-~~~~vp~G--~~GEL~i~G 1476 (4334)
T PRK05691       1411 RLPQVQLHNRYGPTETAINVTHWQCQAE----------DGERSPIGRPLGNV-LCRVLDA-ELNLLPPG--VAGELCIGG 1476 (4334)
T ss_pred             hCCCcEEEeCCCcChheeeeeeeecccc----------cCCCCcccceeCCC-EEEEECC-CCCCCCCC--CceEEEecC
Confidence             3 6899999999999766554321110          11123577777776 7888875 57777776  779999999


Q ss_pred             hhhhhhhcCCchhhHhhhc--------cceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeE
Q 008535          412 NTVMLGYFKNPKATEEAFR--------NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEA  483 (562)
Q Consensus       412 ~~~~~gy~~~~~~~~~~~~--------~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~  483 (562)
                      +.+++||+++++.+.+.|.        .+||+|||+|++++||.++++||.||+||++|.+|+|.+||.+|.++|+|.++
T Consensus      1477 ~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~d~qiki~G~rie~~eIE~~l~~~~~V~~a 1556 (4334)
T PRK05691       1477 AGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARWNADGALEYLGRLDQQVKLRGFRVEPEEIQARLLAQPGVAQA 1556 (4334)
T ss_pred             cccchhhcCCccccHhhCCCCCCCCCCceEEEccceEEECCCCCEEEecccCcEEEECCEEcCHHHHHHHHHhCCCcceE
Confidence            9999999999999999883        24999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEee-cccCCCCCcchHHHHhhhh
Q 008535          484 AVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFE-DIPVNSTGKVQKFVLRGKV  553 (562)
Q Consensus       484 ~v~~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~-~lP~t~~GKv~r~~l~~~~  553 (562)
                      +|+...+. .++.++++++...+.....+++++++++++|.|++|..+++. +||+|++||++|++|++..
T Consensus      1557 ~v~~~~~~-~~~~lva~~~~~~~~~~~~~~l~~~l~~~Lp~y~vP~~~~~~~~lP~t~~GKidr~~L~~~~ 1626 (4334)
T PRK05691       1557 AVLVREGA-AGAQLVGYYTGEAGQEAEAERLKAALAAELPEYMVPAQLIRLDQMPLGPSGKLDRRALPEPV 1626 (4334)
T ss_pred             EEEEeeCC-CCCEEEEEEEeCCCCCCCHHHHHHHHHHhCccccCCcEEEEccccCCCCCCCcChhhcCccc
Confidence            99876554 457899999887766667789999999999999999988855 5999999999999997643

>PRK05850 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.6e-60  Score=504.12  Aligned_cols=500  Identities=19%  Similarity=0.236  Sum_probs=369.0

Q ss_pred             CChHHHHHHHHHHcCCceEEEECC---------eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHh
Q 008535           20 LTPIDFLERAAHVYGDATSIIYGT---------VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAV   90 (562)
Q Consensus        20 ~ti~~~l~~~a~~~p~~~a~~~~~---------~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~   90 (562)
                      +++.++|++++..+|+++|+.+.+         +++||+||++++.++|+.|.++| ++||+|+++++|+++++++++||
T Consensus         1 ~s~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~lA~   79 (578)
T PRK05850          1 SSVPSLLRERASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFLGA   79 (578)
T ss_pred             CcHHHHHHHHHhcCCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHHHH
Confidence            468899999999999999998632         68999999999999999999999 68999999999999999999999


Q ss_pred             hhccceEEecCC---CCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCccccc
Q 008535           91 PMAGAVLSALNT---RLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVA  167 (562)
Q Consensus        91 ~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (562)
                      +++|++++|+++   ..+.+++.++++++++++++++.+..+.+...........    ...++.++...          
T Consensus        80 ~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~----------  145 (578)
T PRK05850         80 LQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQS----APPVIEVDLLD----------  145 (578)
T ss_pred             HHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhccccc----ccceEeecccc----------
Confidence            999999999997   4578899999999999999999877665544322111000    11122111100          


Q ss_pred             CCCCCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhc-C-----CCCCCee
Q 008535          168 NNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRC-D-----VRDMPVF  241 (562)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~-~-----~~~~~~~  241 (562)
                                  +.....   .......++++++++|||||||.||||.++|+++..+.......+ .     ...++++
T Consensus       146 ------------~~~~~~---~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~  210 (578)
T PRK05850        146 ------------LDSPRG---SDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTV  210 (578)
T ss_pred             ------------cccCCc---cccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceE
Confidence                        000000   001123467999999999999999999999999988766554332 2     3457889


Q ss_pred             eeecccccchhhHH-HHHhHhhceEEEEecc----CCHHHHHHHHHhcCeEEEEcchHHHHHHHhccc---cccccccce
Q 008535          242 LWTLDMFRCNGWCC-TWAMAAVGGINVCIRT----VSAKIIFDSILIHKVTHLCGQPRILNMIANASA---SDQNQLQRK  313 (562)
Q Consensus       242 l~~~pl~~~~gl~~-~~~~~~~g~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~---~~~~~l~~l  313 (562)
                      ++++|++|.+|+.. .+.+++.|+++++.++    .++..+++.++++++++....+..+..+.....   .....++++
T Consensus       211 l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l  290 (578)
T PRK05850        211 VSWLPFYHDMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFSAAPNFAFELAVRKTSDDDMAGLDLGGV  290 (578)
T ss_pred             EEECCCCCCchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEEeCCcHHHHHHHHhcchhhhcCcchhhh
Confidence            99999999999864 6777888888888764    278999999999999866544444444433221   122356789


Q ss_pred             EEEEEeCCCChHHHHHHHHh-c---C---CeeeccccCccccCcccccccCCCCCCCcCCc----cc---------cccc
Q 008535          314 VIIVIAGVLPTIEVLEQVAN-F---G---FNIRHAYGMTEVLGPAIVRQWKPEGESSALDH----EH---------EMTK  373 (562)
Q Consensus       314 ~~i~~~g~~l~~~~~~~~~~-~---~---~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~----~~---------~~~~  373 (562)
                      |.++.||++++++..++|.+ +   +   ..+++.||+||++..+................    ..         ....
T Consensus       291 r~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~  370 (578)
T PRK05850        291 LGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPL  370 (578)
T ss_pred             eeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCCCceE
Confidence            99999999999999888863 3   2   36899999999875443322111000000000    00         0000


Q ss_pred             cccCccccccccceecccCCcccccCCCCceeEEEEcchhhhhhhcCCchhhHhhhc------------cceeeeCceeE
Q 008535          374 HREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFR------------NGWYHTGDLAV  441 (562)
Q Consensus       374 ~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~------------~g~~~TGD~~~  441 (562)
                      ...|.|.  ...+++++.+++.+++.|  +.|||+|+|+.++.||+++++.+.+.|.            +|||+|||+|+
T Consensus       371 ~~~g~p~--~~~~~ivd~~~~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~  446 (578)
T PRK05850        371 VSYGSPR--SPTVRIVDPDTCIECPAG--TVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGF  446 (578)
T ss_pred             EeccCCC--CCEEEEEcCCCCcCCCCC--CEEEEEEecCcccccccCChhhhHHHhhcccccccccCCCCCeeeccceee
Confidence            1222222  236777776666777666  7899999999999999999999998883            47999999999


Q ss_pred             EcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCCCCC------HHHHH
Q 008535          442 RNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREAS------PEELV  515 (562)
Q Consensus       442 ~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~~------~~~l~  515 (562)
                      ++ +|++++.||.+|+||++|++|+|.+||++|.+++.+ +++|++++++ .++.++++|+++++...+      ..+++
T Consensus       447 ~~-~G~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~~-~~~v~~v~~~-~~~~~~a~v~~~~~~~~~~~~~~~~~~l~  523 (578)
T PRK05850        447 IS-EGELFIVGRIKDLLIVDGRNHYPDDIEATIQEITGG-RVAAISVPDD-GTEKLVAIIELKKRGDSDEEAMDRLRTVK  523 (578)
T ss_pred             EE-CCEEEEEcccccEEEECCeecCHHHHHHHHHHhcCC-cEEEEEecCC-CceEEEEEEEeccccCcchhhhhhHHHHH
Confidence            98 999999999999999999999999999999999985 4788888876 678899999987654332      23556


Q ss_pred             HHHhccCCCC--CCCcEEEee---cccCCCCCcchHHHHhhhhhhh
Q 008535          516 TFCGDELPSC--MVPRAIFFE---DIPVNSTGKVQKFVLRGKVNAT  556 (562)
Q Consensus       516 ~~~~~~l~~~--~~p~~i~~~---~lP~t~~GKv~r~~l~~~~~~~  556 (562)
                      +.+...++.+  ..|..+.++   .||+|++||++|++|++.|.+.
T Consensus       524 ~~v~~~l~~~~~~~~~~~~~~~~~~iP~t~~GKi~R~~l~~~~~~~  569 (578)
T PRK05850        524 REVTSAISKSHGLSVADLVLVAPGSIPITTSGKIRRAACVEQYRQD  569 (578)
T ss_pred             HHHHHHHHHHhCCCceEEEEeCCCCcCCCCCchHHHHHHHHHHHcC
Confidence            6655544432  245555443   4999999999999999998764

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=100.00  E-value=2.3e-60  Score=540.08  Aligned_cols=497  Identities=22%  Similarity=0.234  Sum_probs=392.3

Q ss_pred             CCCChHHHHHHHHHHcC-CceEEEE-CCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccc
Q 008535           18 VPLTPIDFLERAAHVYG-DATSIIY-GTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGA   95 (562)
Q Consensus        18 ~~~ti~~~l~~~a~~~p-~~~a~~~-~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~   95 (562)
                      ...++.+.+.++++++| ++.++.+ .++++||+||+++++++|+.|.+ |+++||+|+++++|+++++++++||+++|+
T Consensus       629 ~~~~~~~~l~~~~~~~~~~~~ai~~~~~~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~~la~~~~G~  707 (1140)
T PRK06814        629 YDRTLFEALIEAAKIHGFKKLAVEDPVNGPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVTFFALQSAGR  707 (1140)
T ss_pred             ccCCHHHHHHHHHHHcCCCCeEeECCCCCccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHHHHHHHHCCC
Confidence            45678888988888886 5677776 36789999999999999999975 999999999999999999999999999999


Q ss_pred             eEEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHH--HHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCC
Q 008535           96 VLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQ--NALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSG  173 (562)
Q Consensus        96 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (562)
                      +++|+++..+.+++.++++++++++++++++..+...  .....+..      ...++.+++....          . ..
T Consensus       708 v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~----------~-~~  770 (1140)
T PRK06814        708 VPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEF------GIRIIYLEDVRAQ----------I-GL  770 (1140)
T ss_pred             EEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhcc------CceEEEehHhhcc----------C-Ch
Confidence            9999999999999999999999999999876543221  11111110      1222322211100          0 00


Q ss_pred             CCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhh
Q 008535          174 SLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGW  253 (562)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl  253 (562)
                      ...+.+.......... ..+..++|+++++|||||||.||||.+||+++..+.......+++.++|++++.+|++|.+++
T Consensus       771 ~~~~~~~~~~~~~~~~-~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~  849 (1140)
T PRK06814        771 ADKIKGLLAGRFPLVY-FCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFHSFGL  849 (1140)
T ss_pred             HHHHHHHhhccCCccc-cCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhhCCCCcCEEEEecchHHHHHH
Confidence            0001111111111100 112467899999999999999999999999999888888888899999999999999999998


Q ss_pred             -HHHHHhHhhceEEEEecc-CCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHH
Q 008535          254 -CCTWAMAAVGGINVCIRT-VSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQV  331 (562)
Q Consensus       254 -~~~~~~~~~g~~~v~~~~-~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~  331 (562)
                       ...+.++..|+++++.+. .+...+.+.++++++|++..+|++++.+.+..  ...+++++|.+++||++++++..+.+
T Consensus       850 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~--~~~~~~~lr~v~~gg~~l~~~~~~~~  927 (1140)
T PRK06814        850 TGGLVLPLLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYA--HPYDFRSLRYVFAGAEKVKEETRQTW  927 (1140)
T ss_pred             HHHHHHHHHcCCEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhc--ccccccceeEEEEcCCcCCHHHHHHH
Confidence             456677888888887764 56778889999999999999999999987753  33567899999999999999999998


Q ss_pred             H-hcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEc
Q 008535          332 A-NFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFR  410 (562)
Q Consensus       332 ~-~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~  410 (562)
                      + .++.++++.||+||++..+......            ......+|.|.++. .+++.+.+ +      .++.|||+++
T Consensus       928 ~~~~~~~~~~~YG~TE~~~~~~~~~~~------------~~~~~~vG~p~~g~-~~~~~~~~-~------~~~~Gel~v~  987 (1140)
T PRK06814        928 MEKFGIRILEGYGVTETAPVIALNTPM------------HNKAGTVGRLLPGI-EYRLEPVP-G------IDEGGRLFVR  987 (1140)
T ss_pred             HHHhCCcEEeccccccccceEEecCCC------------CCCCCcCCccCCCC-eEEEeecC-C------CCCceEEEEe
Confidence            7 5689999999999998765442110            11234567777766 66665532 1      1256999999


Q ss_pred             chhhhhhhcCCchhhH-hhhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeee
Q 008535          411 ANTVMLGYFKNPKATE-EAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKV  489 (562)
Q Consensus       411 ~~~~~~gy~~~~~~~~-~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~  489 (562)
                      |++++.||++++.... ..+.+|||+|||+|++|+||++++.||.||+||++|++|+|.+||+++.+++.+.+++|++++
T Consensus       988 g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~ 1067 (1140)
T PRK06814        988 GPNVMLGYLRAENPGVLEPPADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAGEMISLAAVEELAAELWPDALHAAVSIP 1067 (1140)
T ss_pred             CCCcchhhcCCCCCCccccCCCCeEecCCEEEECCCCeEEEEecccCeeeeCCEEECHHHHHHHHHhcCCcccEEEEEcc
Confidence            9999999998764332 223589999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCceeEEEEEeCCCCCCCHHHHHHHHhcc-CCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhhcc
Q 008535          490 DDQLKEVPVAFVKLKEGREASPEELVTFCGDE-LPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNATAV  558 (562)
Q Consensus       490 ~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~-l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~~~  558 (562)
                      ++..++.+++++.   ..+.+.+++.+++++. ++.+++|+.+.+.+ +|+|++||++|++|++++++...
T Consensus      1068 ~~~~g~~~~~~~~---~~~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~ 1135 (1140)
T PRK06814       1068 DARKGERIILLTT---ASDATRAAFLAHAKAAGASELMVPAEIITIDEIPLLGTGKIDYVAVTKLAEEAAA 1135 (1140)
T ss_pred             cCCCCceEEEEEc---CCCcCHHHHHHHHHHcCCCcccCCcEEEEecCcCCCCCCCCcHHHHHHHHHHhhc
Confidence            9988888777654   2345678999999864 99999999987554 99999999999999999887653

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=2.8e-61  Score=455.37  Aligned_cols=522  Identities=19%  Similarity=0.241  Sum_probs=414.3

Q ss_pred             ccCCCCCChHHHHHHHHHHcCCceEEEECC-----------------------eeccHHHHHHHHHHHHHHHHHcCCCCC
Q 008535           14 SANNVPLTPIDFLERAAHVYGDATSIIYGT-----------------------VRFSWRQTHQICLKLASALAQLKISRG   70 (562)
Q Consensus        14 ~~~~~~~ti~~~l~~~a~~~p~~~a~~~~~-----------------------~~~Ty~el~~~~~~~a~~L~~~gv~~g   70 (562)
                      .......|+.+++++.++.+.++.++-..+                       ..+||.|+++++.++|.+|.+.|++++
T Consensus        35 ~~~~g~~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~w~sy~ev~~~~~~~gsGL~~lG~k~~  114 (678)
T KOG1180|consen   35 PPNPGASTLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYKWMSYNEVYERVHNFGSGLVKLGLKPK  114 (678)
T ss_pred             CCCCCcccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEeccceeeecHHHHHHHHHHHHHHHHHhCCCCC
Confidence            344456699999999999999998875311                       357999999999999999999999987


Q ss_pred             CE-EEEEcCCcHHHHHHHHHhhhccceEEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCc
Q 008535           71 DI-VAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPL  149 (562)
Q Consensus        71 d~-V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (562)
                      ++ ++++++.+.+|+++++||++.+..+|.+..++..+.+.+-|++++++.+||+.+.++.+....+....      ...
T Consensus       115 e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~LL~kl~~~l~~~~~------vk~  188 (678)
T KOG1180|consen  115 ETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTDSELLPKLKAPLKQAKT------VKH  188 (678)
T ss_pred             CCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeCHHHHHHHHHHHhccCc------eeE
Confidence            77 99999999999999999999999999999999999999999999999999999988876665554332      456


Q ss_pred             eeccCCCCCCCCCcccccC-CCCCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHH
Q 008535          150 LVTIPECDHYQPSTCSVAN-NFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLA  228 (562)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~  228 (562)
                      ++..+.............. .......+++++++.++.....+.+..++|+|+|+|||||||.||||+++|.|+.+....
T Consensus       189 II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p~Dia~IMYTSGSTG~PKGVml~H~NiVA~~~G  268 (678)
T KOG1180|consen  189 IIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIPPHPPKPSDIACIMYTSGSTGLPKGVMLTHSNIVAGVTG  268 (678)
T ss_pred             EEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCCCCCCCCCceEEEEEcCCCCCCCceEEEecccHHhhhhh
Confidence            6666543322111111111 122345788999988877655555567899999999999999999999999999998887


Q ss_pred             HHhhc-CCCCCCeeeeecccccchhhHHHHHhHhhceEEEEeccCCH--------HHHHHHHHhcCeEEEEcchHHHHHH
Q 008535          229 QISRC-DVRDMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCIRTVSA--------KIIFDSILIHKVTHLCGQPRILNMI  299 (562)
Q Consensus       229 ~~~~~-~~~~~~~~l~~~pl~~~~gl~~~~~~~~~g~~~v~~~~~~~--------~~~~~~i~~~~~t~l~~~p~~~~~l  299 (562)
                      ..... .+++.|+++..+||.|++.+..-+.++..|+.+-..+....        ..---.+..+|||++.++|.++.++
T Consensus       269 ~~~~v~~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD~~~lkPTiM~~VpAV~drV  348 (678)
T KOG1180|consen  269 VGENVPELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPLTLTDTSSKIKKGCKGDLTELKPTIMAAVPAVMDRV  348 (678)
T ss_pred             hcccCcccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCcceecccchhhccCCcCccccccchhhhhhHHHHHHH
Confidence            77665 78999999999999999999999999999988776543211        1122335678999999999999988


Q ss_pred             Hhcccccc------------------------------------------ccccceEEEEEeCCCChHHHHHHHH-hcCC
Q 008535          300 ANASASDQ------------------------------------------NQLQRKVIIVIAGVLPTIEVLEQVA-NFGF  336 (562)
Q Consensus       300 ~~~~~~~~------------------------------------------~~l~~l~~i~~~g~~l~~~~~~~~~-~~~~  336 (562)
                      .+....+-                                          ..-..+|.+++||++++++..+.+. -+.+
T Consensus       349 rKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~lGG~lR~~LsGGapLS~dtQrF~nic~C~  428 (678)
T KOG1180|consen  349 RKGVLSKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKIRALLGGNLRYILSGGAPLSPDTQRFMNICFCC  428 (678)
T ss_pred             HHHHHHHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHhCCceEEEEeCCCCCCHHHHHHHHHhccc
Confidence            65321100                                          0011699999999999999999988 4577


Q ss_pred             eeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhhhh
Q 008535          337 NIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVML  416 (562)
Q Consensus       337 ~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~  416 (562)
                      ++.++||.||+++..+......            .....+|.|.+.. .++++|.+++.=.+.+....|||+|+|++++.
T Consensus       429 Pv~qGYGLTEtca~~tv~e~~d------------~~~g~vG~pl~c~-eiKLvdw~EgGY~~~~~PPrGEI~i~G~~vt~  495 (678)
T KOG1180|consen  429 PVLQGYGLTETCAAATVLEPED------------FSTGRVGAPLPCC-EIKLVDWEEGGYFAKNKPPRGEILIGGPNVTM  495 (678)
T ss_pred             cccccccccchhcccEecChhh------------cccccccCCccce-EEEEEEhhhcCccCCCCCCCceEEecCCccCh
Confidence            9999999999998887754322            2223567666666 88888887766555444346999999999999


Q ss_pred             hhcCCchhhHhhhc--cc--eeeeCceeEEcCCCcEEEeccccceee-cCCeEechHHHHHHHhcCCCceeEEEEeeeCC
Q 008535          417 GYFKNPKATEEAFR--NG--WYHTGDLAVRNPDGYVQMKDRRKDIII-SGAEIISSLEVEAVLLSNPKVLEAAVVGKVDD  491 (562)
Q Consensus       417 gy~~~~~~~~~~~~--~g--~~~TGD~~~~~~~g~l~~~GR~~d~i~-~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~  491 (562)
                      |||++++.|++.|.  +|  ||+|||+|++.+||++.+++|.+|.+| .+|+.|++..+|.+++..|.|.+.+|.+....
T Consensus       496 gY~kn~ekT~e~ft~~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s~p~V~NICvyAd~~~  575 (678)
T KOG1180|consen  496 GYYKNEEKTKEDFTVEDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISLGKVEAALRSSPYVDNICVYADSNK  575 (678)
T ss_pred             hhhCChhhhhhhceecCCcEEEeccccceecCCCcEEEeechhhhhhhcccceeehHHHHHHHhcCcchhheEEeccccc
Confidence            99999999999993  78  999999999999999999999999999 89999999999999999999999999986554


Q ss_pred             CCCceeEEEEEeCCCCC--------CCH-----------------HHHHHHH-hccCCCCCCCcEEEeeccc-------C
Q 008535          492 QLKEVPVAFVKLKEGRE--------ASP-----------------EELVTFC-GDELPSCMVPRAIFFEDIP-------V  538 (562)
Q Consensus       492 ~~~~~~v~~v~~~~~~~--------~~~-----------------~~l~~~~-~~~l~~~~~p~~i~~~~lP-------~  538 (562)
                         ..+|++|++++..-        ...                 +++.+.- .+.|....+|..|++.+.|       .
T Consensus       576 ---s~~VaiVVPn~~~lt~lA~k~Gi~~~~~e~lc~d~k~~~~v~k~L~~~ak~~~L~~iEip~~I~l~~e~WTPenGlv  652 (678)
T KOG1180|consen  576 ---SKPVAIVVPNQKHLTKLAEKAGISGSTWEELCEDKKVVKAVLKELIEAAKSQKLERIEIPAKIVLSPEPWTPENGLV  652 (678)
T ss_pred             ---ceeEEEEcCCchHHHHHHHHcCCChhhHHHHhccHHHHHHHHHHHHHHHHhcccccccccceeEecCCCcCCCcccc
Confidence               45999999875420        111                 2222222 4468899999999988866       4


Q ss_pred             CCCCcchHHHHhhhhhhhc
Q 008535          539 NSTGKVQKFVLRGKVNATA  557 (562)
Q Consensus       539 t~~GKv~r~~l~~~~~~~~  557 (562)
                      |+.-|+.|+.++..|.++-
T Consensus       653 T~A~KLKRk~I~~~~k~ei  671 (678)
T KOG1180|consen  653 TAALKLKRKEILAAYKKEI  671 (678)
T ss_pred             HHHHHhhHHHHHHHHHHHH
Confidence            4567999999999998754

>PRK12582 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.4e-60  Score=506.99  Aligned_cols=498  Identities=17%  Similarity=0.161  Sum_probs=367.7

Q ss_pred             CCCChHHHHHHHHHHcCCceEEEECC------eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhh
Q 008535           18 VPLTPIDFLERAAHVYGDATSIIYGT------VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVP   91 (562)
Q Consensus        18 ~~~ti~~~l~~~a~~~p~~~a~~~~~------~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~   91 (562)
                      .+.++.++|+++++.+|+++|+.+.+      +++||+||.++++++|++|.+.|+++||+|+++++|+++++++++||+
T Consensus        47 ~~~~l~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~  126 (624)
T PRK12582         47 YPRSIPHLLAKWAAEAPDRPWLAQREPGHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAM  126 (624)
T ss_pred             cccCHHHHHHHHHHHCCCchheecccCCCCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHH
Confidence            46789999999999999999998743      589999999999999999999999999999999999999999999999


Q ss_pred             hccceEEecCCCCCH-----HHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccc
Q 008535           92 MAGAVLSALNTRLDS-----ATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSV  166 (562)
Q Consensus        92 ~~G~~~v~l~~~~~~-----~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (562)
                      ++|++++|++|.++.     +++.++++.++++++|++....  .......+...     ...++.+.....        
T Consensus       127 ~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~-----~~~~i~~~~~~~--------  191 (624)
T PRK12582        127 QAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAP--FARALAALDLL-----DVTVVHVTGPGE--------  191 (624)
T ss_pred             HcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHH--HHHHHHhhhhc-----CceEEEEcCCCc--------
Confidence            999999999999885     8999999999999999986421  11111111100     011222221100        


Q ss_pred             cCCCCCCCCchhhhhhcccCcc--ccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCC---CCee
Q 008535          167 ANNFPSGSLDYNDLLEMGKADF--EMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRD---MPVF  241 (562)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~---~~~~  241 (562)
                          ......+.++........  .......++++++|+|||||||.||||.+||+++..+.......+....   .+++
T Consensus       192 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~  267 (624)
T PRK12582        192 ----GIASIAFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVS  267 (624)
T ss_pred             ----ccccccHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhccccCCCCCceE
Confidence                001133444433221110  0111245689999999999999999999999999877665544444443   5789


Q ss_pred             eeecccccchhhHH-HHHhHhhceEEEEec-cCCH---HHHHHHHHhcCeEEEEcchHHHHHHHhccccc----cccccc
Q 008535          242 LWTLDMFRCNGWCC-TWAMAAVGGINVCIR-TVSA---KIIFDSILIHKVTHLCGQPRILNMIANASASD----QNQLQR  312 (562)
Q Consensus       242 l~~~pl~~~~gl~~-~~~~~~~g~~~v~~~-~~~~---~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~----~~~l~~  312 (562)
                      +.++|++|.+|+.. ++.++..|+++++.+ .+++   ..+++.++++++|+++++|.+++.|++.....    ...+++
T Consensus       268 l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~s  347 (624)
T PRK12582        268 LDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDDALRRSFFKN  347 (624)
T ss_pred             EEechHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhCHHHHHHHhhh
Confidence            99999999999865 445667788887754 2333   35677788999999999999999987653222    234689


Q ss_pred             eEEEEEeCCCChHHHHHHHHhc-------CCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCcccccccc
Q 008535          313 KVIIVIAGVLPTIEVLEQVANF-------GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQG  385 (562)
Q Consensus       313 l~~i~~~g~~l~~~~~~~~~~~-------~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  385 (562)
                      +|.+++||+++++++.+.|.+.       ++++++.||+||+++++......            ......+|.+.++. .
T Consensus       348 lr~i~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~------------~~~~~svG~p~pg~-~  414 (624)
T PRK12582        348 LRLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHWD------------TERVGLIGLPLPGV-E  414 (624)
T ss_pred             eeEEEecCCCCCHHHHHHHHHHHHhhcCCCceEEeccccccccceeecccCC------------CCCCCCCCcCCCCc-E
Confidence            9999999999999999998853       36799999999997655422110            11234567666665 5


Q ss_pred             ceecccCCcccccCCCCceeEEEEcchhhhhhhcCCchhhHhhh-ccceeeeCceeEE-c---CCCcEEEeccccceee-
Q 008535          386 VDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAF-RNGWYHTGDLAVR-N---PDGYVQMKDRRKDIII-  459 (562)
Q Consensus       386 ~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~-~---~~g~l~~~GR~~d~i~-  459 (562)
                      +++++        .  |+.|||+|+|+.++.||+++++.+.+.| .+|||+|||+|++ |   ++|.+++.||.||+|+ 
T Consensus       415 v~i~~--------~--G~~GEl~vrg~~v~~GY~~~p~~t~~~f~~dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~  484 (624)
T PRK12582        415 LKLAP--------V--GDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKL  484 (624)
T ss_pred             EEEcc--------C--CCceEEEEECCcccccccCCccchhhhcCccCCccccceEEecCCcCCCCceEEeccchhhEec
Confidence            55542        2  2569999999999999999999999888 4899999999998 4   4699999999999999 


Q ss_pred             cCCeEechHHHH--HHHhcCCCceeEEEEeeeCCCCCceeEEE------EEeCCCC----CCCHHHHHHHHhcc------
Q 008535          460 SGAEIISSLEVE--AVLLSNPKVLEAAVVGKVDDQLKEVPVAF------VKLKEGR----EASPEELVTFCGDE------  521 (562)
Q Consensus       460 ~~G~~v~~~~iE--~~l~~~~~v~~~~v~~~~~~~~~~~~v~~------v~~~~~~----~~~~~~l~~~~~~~------  521 (562)
                      .+|++|+|.+||  .++.+||.|.+++|++.+++..++.++..      +...++.    ..+.+++.++++..      
T Consensus       485 ~~G~~i~p~~iE~e~~l~~~p~V~~a~VvG~~~~~~g~lv~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~  564 (624)
T PRK12582        485 STGTWVSVGTLRPDAVAACSPVIHDAVVAGQDRAFIGLLAWPNPAACRQLAGDPDAAPEDVVKHPAVLAILREGLSAHNA  564 (624)
T ss_pred             CCCcEechHHHHHHHHHhcCcchheEEEEcCCCCcEEEEEecCHHHHHHHHhcCCCCHHHHhcCHHHHHHHHHHHHHHHh
Confidence            689999998885  68889999999999998777654332210      1111111    01234565555544      


Q ss_pred             -CCCCC-CCcEEEeec-cc------CCCCCcchHHHHhhhhhhhc
Q 008535          522 -LPSCM-VPRAIFFED-IP------VNSTGKVQKFVLRGKVNATA  557 (562)
Q Consensus       522 -l~~~~-~p~~i~~~~-lP------~t~~GKv~r~~l~~~~~~~~  557 (562)
                       ++.+. +|+++.+.+ +|      +|++||+.|+.+.+.|++.-
T Consensus       565 ~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~~R~~~~~~y~~~i  609 (624)
T PRK12582        565 EAGGSSSRIARALLMTEPPSIDAGEITDKGYINQRAVLERRAALV  609 (624)
T ss_pred             hcCCChhheEEEEEeCCCCCccCCcCCccccccHHHHHHHHHHHH
Confidence             45554 998887655 44      77888999999988888764

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=100.00  E-value=6e-60  Score=483.38  Aligned_cols=435  Identities=25%  Similarity=0.371  Sum_probs=362.3

Q ss_pred             cHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEEecCCCCCHHHHHHHHhhCCceEEEEecc
Q 008535           47 SWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQ  126 (562)
Q Consensus        47 Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~  126 (562)
                      ||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++|+++..+.+.+..+++.++++.+++++.
T Consensus         1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   80 (436)
T TIGR01923         1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL   80 (436)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             chHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCchhhhhhcccCccccCCCCCCCCceEEEecc
Q 008535          127 FVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTS  206 (562)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TS  206 (562)
                      .....      .          ...                        .+..+................+++++++|||
T Consensus        81 ~~~~~------~----------~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TS  120 (436)
T TIGR01923        81 LEEKD------F----------QAD------------------------SLDRIEAAGRYETSLSASFNMDQIATLMFTS  120 (436)
T ss_pred             ccccc------e----------eec------------------------chHhhhhcccccccccccCCcCceEEEEeCC
Confidence            32100      0          000                        0000000000000011123457899999999


Q ss_pred             CCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHHHHHhHhhceEEEEeccCCHHHHHHHHHhcCe
Q 008535          207 GSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKV  286 (562)
Q Consensus       207 GtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~  286 (562)
                      ||||.||+|.++|+++..........++++++|++++..|++|.+++...+.++..|+++++.+.++  .+++.++++++
T Consensus       121 GtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~--~~~~~l~~~~~  198 (436)
T TIGR01923       121 GTTGKPKAVPHTFRNHYASAVGSKENLGFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKFN--QLLEMIANERV  198 (436)
T ss_pred             CCCCCCcEEEEehHHHHHHHHHHHhhcCCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchHH--HHHHHHHHhCC
Confidence            9999999999999999998888888899999999999999999999988888899999988876553  89999999999


Q ss_pred             EEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHHhcCCeeeccccCccccCcccccccCCCCCCCcCC
Q 008535          287 THLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALD  366 (562)
Q Consensus       287 t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~  366 (562)
                      +++.++|.+++.|+.....    .+++|.++++|++++++..+.+...+..+++.||+||++..++......        
T Consensus       199 t~~~~~P~~l~~l~~~~~~----~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~--------  266 (436)
T TIGR01923       199 THISLVPTQLNRLLDEGGH----NENLRKILLGGSAIPAPLIEEAQQYGLPIYLSYGMTETCSQVTTATPEM--------  266 (436)
T ss_pred             eEEEeHHHHHHHHHhCcCC----CCceEEEEECCCCCCHHHHHHHHHhCCceeeEecCCccchhccCcCccc--------
Confidence            9999999999999886532    2689999999999999999988878999999999999987655432110        


Q ss_pred             ccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhhhhhhcCCchhhHhhhccceeeeCceeEEcCCC
Q 008535          367 HEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDG  446 (562)
Q Consensus       367 ~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g  446 (562)
                         .......|.+.++. .+++...+.+        +.|||+++|+.++.||++++..+...+.+|||+|||++++++||
T Consensus       267 ---~~~~~~~G~~~~~~-~~~i~~~~~~--------~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~dg  334 (436)
T TIGR01923       267 ---LHARPDVGRPLAGR-EIKIKVDNKE--------GHGEIMVKGANLMKGYLYQGELTPAFEQQGWFNTGDIGELDGEG  334 (436)
T ss_pred             ---cccccCCCccCCCc-EEEEEeCCCC--------CceEEEEECCccchhhCCChhhhhhhhcCCCeeccceEEEcCCC
Confidence               00111256665554 5555322111        55999999999999999988888877788999999999999999


Q ss_pred             cEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCC
Q 008535          447 YVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCM  526 (562)
Q Consensus       447 ~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~  526 (562)
                      .+++.||.+|+||++|.++++.+||+.|.+++.|.+++|++.++...++.++++++..++  .+.+++.+++++.++.++
T Consensus       335 ~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~--~~~~~l~~~l~~~l~~~~  412 (436)
T TIGR01923       335 FLYVLGRRDDLIISGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVSESD--ISQAKLIAYLTEKLAKYK  412 (436)
T ss_pred             CEEEeccccCeEEeCCEeeCHHHHHHHHHhCCCeeEEEEeCCcchhcCCeeEEEEEECCC--CCHHHHHHHHHHhhhCCC
Confidence            999999999999999999999999999999999999999998887777888888887653  677899999999999999


Q ss_pred             CCcEEEeec-ccCCCCCcchHHHH
Q 008535          527 VPRAIFFED-IPVNSTGKVQKFVL  549 (562)
Q Consensus       527 ~p~~i~~~~-lP~t~~GKv~r~~l  549 (562)
                      +|..+.+.+ ||+|++||++|++|
T Consensus       413 ~p~~i~~~~~iP~t~~GK~~r~~L  436 (436)
T TIGR01923       413 VPIAFEKLDELPYNASGKILRNQL  436 (436)
T ss_pred             CCeEEEEecCCCCCCCCceecccC
Confidence            999888655 99999999999875

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK09192 acyl-CoA synthetase; Validated

Probab=100.00  E-value=9.4e-60  Score=497.42  Aligned_cols=498  Identities=21%  Similarity=0.215  Sum_probs=383.1

Q ss_pred             ChHHHHHHHHHHcCCceEEEECC---eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceE
Q 008535           21 TPIDFLERAAHVYGDATSIIYGT---VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVL   97 (562)
Q Consensus        21 ti~~~l~~~a~~~p~~~a~~~~~---~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~   97 (562)
                      ++.++|+..++.+|+..++...+   +.+||+||+.++.++|.+|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  101 (579)
T PRK09192         22 TLVEALDYAALGEAGMNFYDRRGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAGLVP  101 (579)
T ss_pred             hHHHHHHHhhccCCceEEEecCCCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCchhHHHHHHHHHHcCCee
Confidence            89999999999988776654332   579999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCC-------HHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCC
Q 008535           98 SALNTRLD-------SATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNF  170 (562)
Q Consensus        98 v~l~~~~~-------~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (562)
                      +|+++..+       .+++.++++.+++++++++....+.+.......         .....                  
T Consensus       102 v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~~---------~~~~~------------------  154 (579)
T PRK09192        102 VPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHGN---------PLLHV------------------  154 (579)
T ss_pred             EeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhccc---------cccce------------------
Confidence            99976443       689999999999999999987665554432111         00000                  


Q ss_pred             CCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHh-hcCCCCCCeeeeeccccc
Q 008535          171 PSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQIS-RCDVRDMPVFLWTLDMFR  249 (562)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~-~~~~~~~~~~l~~~pl~~  249 (562)
                          .++.++........ ......++++++++|||||||.||||.++|++++........ .+++.++|+++.++|++|
T Consensus       155 ----~~~~~~~~~~~~~~-~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h  229 (579)
T PRK09192        155 ----LSHAWFKALPEADV-ALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFYH  229 (579)
T ss_pred             ----eehhhhcccCCCcc-ccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcccCCCCCeEEEeCCCCC
Confidence                01111111111110 111235679999999999999999999999999988877776 788999999999999999


Q ss_pred             chhhHH-HHHhHhhceEEEEecc----CCHHHHHHHHHhcCeEEEEcchHHHHHHHhccc---cccccccceEEEEEeCC
Q 008535          250 CNGWCC-TWAMAAVGGINVCIRT----VSAKIIFDSILIHKVTHLCGQPRILNMIANASA---SDQNQLQRKVIIVIAGV  321 (562)
Q Consensus       250 ~~gl~~-~~~~~~~g~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~---~~~~~l~~l~~i~~~g~  321 (562)
                      .+++.. ++.++..|+++++.+.    .++..+++.+.++++++++..|..+..+.....   ....+++++|.+++||+
T Consensus       230 ~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~l~~lr~~~~gG~  309 (579)
T PRK09192        230 DMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSKDLAELDLSCWRVAGIGAD  309 (579)
T ss_pred             cchhHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccccccccchhhhheeEecCc
Confidence            999875 4445667777766542    368899999999999988877666665543321   12246789999999999


Q ss_pred             CChHHHHHHHHhc----C---CeeeccccCccccCcccccccCCCCC------------CCcCC----ccccccccccCc
Q 008535          322 LPTIEVLEQVANF----G---FNIRHAYGMTEVLGPAIVRQWKPEGE------------SSALD----HEHEMTKHREGL  378 (562)
Q Consensus       322 ~l~~~~~~~~~~~----~---~~l~~~YG~tE~~~~~~~~~~~~~~~------------~~~~~----~~~~~~~~~~g~  378 (562)
                      +++++..+.+.+.    +   ..+++.||+||+++.++.........            .....    .........+|.
T Consensus       310 ~l~~~~~~~~~~~~~~~g~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~  389 (579)
T PRK09192        310 MIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGK  389 (579)
T ss_pred             cCCHHHHHHHHHHHHhcCCChhhcccccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCC
Confidence            9999999888743    2   24899999999976655432111000            00000    000011235777


Q ss_pred             cccccccceecccCCcccccCCCCceeEEEEcchhhhhhhcCCchhhHhhh-ccceeeeCceeEEcCCCcEEEeccccce
Q 008535          379 NNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAF-RNGWYHTGDLAVRNPDGYVQMKDRRKDI  457 (562)
Q Consensus       379 ~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~  457 (562)
                      +.++. .++|++. ++..++.+  +.|||+++|+.++.||+++ ..+...+ .+|||+|||+|++ ++|.+++.||.+|+
T Consensus       390 ~~p~~-~v~i~d~-~~~~~~~g--~~Gel~i~g~~~~~gY~~~-~~~~~~~~~dgw~~TGDlg~~-~~G~l~~~GR~dd~  463 (579)
T PRK09192        390 ALPGH-EIEIRNE-AGMPLPER--VVGHICVRGPSLMSGYFRD-EESQDVLAADGWLDTGDLGYL-LDGYLYITGRAKDL  463 (579)
T ss_pred             cCCCc-EEEEECC-CCCCCCCC--CEEEEEecCCchhhhhcCC-ccccccccCCceeeccceeeE-ECCEEEEEeccccE
Confidence            77777 7888875 56666655  7799999999999999999 4444444 5899999999999 89999999999999


Q ss_pred             eecCCeEechHHHHHHHhcCCCce--eEEEEeeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCC-CCCCCcEEEee
Q 008535          458 IISGAEIISSLEVEAVLLSNPKVL--EAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELP-SCMVPRAIFFE  534 (562)
Q Consensus       458 i~~~G~~v~~~~iE~~l~~~~~v~--~~~v~~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~-~~~~p~~i~~~  534 (562)
                      ||++|.+|+|.+||++|.++|+|.  +++|++++++. ++.++++++..+....+.+++.+++++.+. .+++|..+.+.
T Consensus       464 i~~~G~~v~p~eIE~~l~~~p~V~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~i~~~  542 (579)
T PRK09192        464 IIINGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQEN-GEKIVLLVQCRISDEERRGQLIHALAALVRSEFGVEAAVELV  542 (579)
T ss_pred             EEECCCccCHHHHHHHHHhcCCccCCcEEEEEeccCC-CeeEEEEEEecCCChHHHHHHHHHHHHHHHHHhCCCceEEEe
Confidence            999999999999999999999998  89999988875 558888888766555567889999988874 67788776654


Q ss_pred             ---cccCCCCCcchHHHHhhhhhhhc
Q 008535          535 ---DIPVNSTGKVQKFVLRGKVNATA  557 (562)
Q Consensus       535 ---~lP~t~~GKv~r~~l~~~~~~~~  557 (562)
                         +||+|++||++|++|++.+....
T Consensus       543 ~~~~lP~t~~GKv~R~~l~~~~~~~~  568 (579)
T PRK09192        543 PPHSLPRTSSGKLSRAKAKKRYLSGA  568 (579)
T ss_pred             CCCCcCCCCCcchhHHHHHHHHHcCC
Confidence               59999999999999999987754

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.6e-57  Score=477.97  Aligned_cols=494  Identities=20%  Similarity=0.186  Sum_probs=375.3

Q ss_pred             ChHHHHHHHHHHcCCceEEEECC--eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEE
Q 008535           21 TPIDFLERAAHVYGDATSIIYGT--VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLS   98 (562)
Q Consensus        21 ti~~~l~~~a~~~p~~~a~~~~~--~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v   98 (562)
                      ++.++|...++..|+.+++...+  +.+||.||++++.++|.+|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~~~~g~v~~   82 (545)
T PRK07768          3 RFTEKMYANARTSPRGMVTGEPDAPVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMRGASLT   82 (545)
T ss_pred             hHHHHHHHHhhCCCcceEEecCCCceEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHcCcccc
Confidence            68888999999999999996644  6899999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHH-------HHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCC
Q 008535           99 ALNTRLDSATL-------ASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFP  171 (562)
Q Consensus        99 ~l~~~~~~~~l-------~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (562)
                      ++++..+.+++       ..+++.++++.+++++........... .        ...                      
T Consensus        83 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~--------~~~----------------------  131 (545)
T PRK07768         83 MLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLEE-K--------GIR----------------------  131 (545)
T ss_pred             ccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhhcc-c--------CCc----------------------
Confidence            99988776544       456777899999998765433322110 0        000                      


Q ss_pred             CCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCC-Ceeeeecccccc
Q 008535          172 SGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDM-PVFLWTLDMFRC  250 (562)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~-~~~l~~~pl~~~  250 (562)
                        ...+.++....+.   ......++++++++|||||||.||+|.++|+++..........+++... |++++.+|++|.
T Consensus       132 --~~~~~~l~~~~~~---~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~  206 (545)
T PRK07768        132 --VLTVADLLAADPI---DPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHD  206 (545)
T ss_pred             --eeehhhhcccCCC---CcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcCCCCCCceeEEeCCCccc
Confidence              1222232222111   1123456899999999999999999999999998888877777888776 899999999999


Q ss_pred             hhhHH-HHHhHhhceEEEEecc----CCHHHHHHHHHhcCeEEEEcchHHHHHHHhcc----ccccccccceEEEEEeCC
Q 008535          251 NGWCC-TWAMAAVGGINVCIRT----VSAKIIFDSILIHKVTHLCGQPRILNMIANAS----ASDQNQLQRKVIIVIAGV  321 (562)
Q Consensus       251 ~gl~~-~~~~~~~g~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~----~~~~~~l~~l~~i~~~g~  321 (562)
                      .++.. ...++..|++.++.++    .++..+.+.+++++++++..+|..+..+....    .....+++++|.++.+|+
T Consensus       207 ~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lr~~~~~g~  286 (545)
T PRK07768        207 MGMVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKPGAFDLSSLRFALNGAE  286 (545)
T ss_pred             hHHHHHHHHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccccCCCchheeeEEeccC
Confidence            99875 4456778888777653    37888999999999999988888877665432    122356789999999999


Q ss_pred             CChHHHHHHHHh----cCC---eeeccccCccccCcccccccCCCCCC------------CcC--CccccccccccCccc
Q 008535          322 LPTIEVLEQVAN----FGF---NIRHAYGMTEVLGPAIVRQWKPEGES------------SAL--DHEHEMTKHREGLNN  380 (562)
Q Consensus       322 ~l~~~~~~~~~~----~~~---~l~~~YG~tE~~~~~~~~~~~~~~~~------------~~~--~~~~~~~~~~~g~~~  380 (562)
                      +++++..+.+.+    ++.   .+++.||+||++..++..........            ..+  ...........|.+.
T Consensus       287 ~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~  366 (545)
T PRK07768        287 PIDPADVEDLLDAGARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPL  366 (545)
T ss_pred             CCCHHHHHHHHHHHHhcCCCcccccccccccccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCC
Confidence            999999888864    454   48999999999866544322110000            000  000112234677887


Q ss_pred             cccccceecccCCcccccCCCCceeEEEEcchhhhhhhcCCchhhHhhhccceeeeCceeEEcCCCcEEEeccccceeec
Q 008535          381 LLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIIS  460 (562)
Q Consensus       381 ~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~  460 (562)
                      ++. .+++++. ++..++.+  +.|||+++|+.++.||++.+......+.+|||+|||+++++++|.+++.||.+|+|+.
T Consensus       367 ~g~-~~~i~~~-~~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~  442 (545)
T PRK07768        367 PGL-EVRVVDE-DGQVLPPR--GVGVIELRGESVTPGYLTMDGFIPAQDADGWLDTGDLGYLTEEGEVVVCGRVKDVIIM  442 (545)
T ss_pred             CCC-EEEEECC-CCCCCCCC--CEEEEEEccCcccccccCCCCCcccccCCCeeeccceEEEecCCEEEEEccccceEEE
Confidence            776 7888874 56766655  7799999999999999987665555456889999999999999999999999999999


Q ss_pred             CCeEechHHHHHHHhcCCCceeEEEEeee--CCCCCceeEEEEEeCCCCC-CCHHHHHHHHhccCCCC--CCCcEEEee-
Q 008535          461 GAEIISSLEVEAVLLSNPKVLEAAVVGKV--DDQLKEVPVAFVKLKEGRE-ASPEELVTFCGDELPSC--MVPRAIFFE-  534 (562)
Q Consensus       461 ~G~~v~~~~iE~~l~~~~~v~~~~v~~~~--~~~~~~~~v~~v~~~~~~~-~~~~~l~~~~~~~l~~~--~~p~~i~~~-  534 (562)
                      +|.+++|.+||+.|.++|+|.+++|++..  +...++..+++++...... ....++.+++++.+..+  ..|..+.++ 
T Consensus       443 ~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~l~~~~~~~p~~v~~v~  522 (545)
T PRK07768        443 AGRNIYPTDIERAAARVEGVRPGNAVAVRLDAGHSREGFAVAVESNAFEDPAEVRRIRHQVAHEVVAEVGVRPRNVVVLG  522 (545)
T ss_pred             CCEecCHHHHHHHHHhCcccccceEEEEEecCCCCceEEEEEEEecccccHHHHHHHHHHHHHHHHHHhCCCccEEEEeC
Confidence            99999999999999999999998777654  3334455555555433211 12245666776665443  578777765 


Q ss_pred             --cccCCCCCcchHHHHhhhhh
Q 008535          535 --DIPVNSTGKVQKFVLRGKVN  554 (562)
Q Consensus       535 --~lP~t~~GKv~r~~l~~~~~  554 (562)
                        .||+|++||++|+.|+++|.
T Consensus       523 ~~~lP~t~~GKi~r~~l~~~~~  544 (545)
T PRK07768        523 PGSIPKTPSGKLRRANAAELVT  544 (545)
T ss_pred             CCcCCCCCchhHHHHHHHHhcC
Confidence              49999999999999999885

>PRK08308 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.5e-57  Score=456.87  Aligned_cols=405  Identities=18%  Similarity=0.166  Sum_probs=343.9

Q ss_pred             EEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEEecCCCCCHHHHHHHHhhCC
Q 008535           38 SIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLE  117 (562)
Q Consensus        38 a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~  117 (562)
                      +++++++++||.||.++++++|+.|. .|+++|++|+++++|+++++++++||+++|++++|+++..+.+++..+++.++
T Consensus         1 ~~~~~~~~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~   79 (414)
T PRK08308          1 MLIVNDEEYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAG   79 (414)
T ss_pred             CeEecCceecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCC
Confidence            36677889999999999999999985 68999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCchhhhhhcccCccccCCCCCCC
Q 008535          118 AKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHEC  197 (562)
Q Consensus       118 ~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (562)
                      ++.+++++....                 .      ..                                   .....++
T Consensus        80 ~~~~i~~~~~~~-----------------~------~~-----------------------------------~~~~~~~  101 (414)
T PRK08308         80 CHGLLYGESDFT-----------------K------LE-----------------------------------AVNYLAE  101 (414)
T ss_pred             CCEEEecCcccc-----------------c------cc-----------------------------------CCCCCCC
Confidence            999998753100                 0      00                                   0012456


Q ss_pred             CceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhH-HHHHhHhhceEEEEeccCCHHH
Q 008535          198 DPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWC-CTWAMAAVGGINVCIRTVSAKI  276 (562)
Q Consensus       198 ~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~-~~~~~~~~g~~~v~~~~~~~~~  276 (562)
                      ++++++|||||||.||+|.+||+++..+.......+....+++++...|++|.+|+. ..+.++..|+++++.+.+++..
T Consensus       102 ~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~  181 (414)
T PRK08308        102 EPSLLQYSSGTTGEPKLIRRSWTEIDREIEAYNEALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKF  181 (414)
T ss_pred             CceEEEECCCCCCCCcEEEEehHhHHHHHHHHHHhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHH
Confidence            899999999999999999999999998888888888888999999999999999975 4677788899999888899999


Q ss_pred             HHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHHhcCCeeeccccCccccCccccccc
Q 008535          277 IFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQW  356 (562)
Q Consensus       277 ~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~  356 (562)
                      +++.++++++++++++|.+++.|.+....    ..+++.++.+|++++++..+.+++.+.++++.||+||++.+..... 
T Consensus       182 ~~~~l~~~~~t~~~~~P~~~~~l~~~~~~----~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~-  256 (414)
T PRK08308        182 ALNILRNTPQHILYAVPLMLHILGRLLPG----TFQFHAVMTSGTPLPEAWFYKLRERTTYMMQQYGCSEAGCVSICPD-  256 (414)
T ss_pred             HHHHHHHhCCeEEEcCHHHHHHHHhcCCc----cccccEEEEccCCCCHHHHHHHHHhCChhhhccCccccCCeeecCC-
Confidence            99999999999999999999999876432    2367889999999999999999877789999999999975433110 


Q ss_pred             CCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhhhhhhcCCchhhHhhhccceeee
Q 008535          357 KPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHT  436 (562)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~T  436 (562)
                                   ......+|.|.++. .+++.+.         .++.||+++++.                  ++||+|
T Consensus       257 -------------~~~~~~~G~p~~~~-~~~~~~~---------~~~~gel~v~~~------------------~~~~~T  295 (414)
T PRK08308        257 -------------MKSHLDLGNPLPHV-SVSAGSD---------ENAPEEIVVKMG------------------DKEIFT  295 (414)
T ss_pred             -------------CCCCCccCccCCCe-EEEEecC---------CCCCceEEEEcC------------------CceEEC
Confidence                         01123456665554 4444321         124599999752                  579999


Q ss_pred             CceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCCCCCHHHHHH
Q 008535          437 GDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVT  516 (562)
Q Consensus       437 GD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~  516 (562)
                      ||+|++|+||.+++.||.||+||++|++|+|.+||+++.++++|.+++|++.+++..++.++++++...  ..+.+++++
T Consensus       296 GDl~~~~~dg~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~v~~~~--~~~~~~l~~  373 (414)
T PRK08308        296 KDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERVKAKVISHE--EIDPVQLRE  373 (414)
T ss_pred             CceEEECCCccEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCC--CCCHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999888889988888654  467889999


Q ss_pred             HHhccCCCCCCCcEEEeec-ccCCCCCcchHHHH
Q 008535          517 FCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVL  549 (562)
Q Consensus       517 ~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l  549 (562)
                      +++++++.+++|..+++.+ ||+|++||++|+.|
T Consensus       374 ~l~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~~  407 (414)
T PRK08308        374 WCIQHLAPYQVPHEIESVTEIPKNANGKVSRKLL  407 (414)
T ss_pred             HHHHhCccccCCcEEEEeccCCCCCCcCeehhhh
Confidence            9999999999999988665 99999999999954

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]

Probab=100.00  E-value=8.9e-56  Score=420.00  Aligned_cols=507  Identities=21%  Similarity=0.211  Sum_probs=399.5

Q ss_pred             CCCCChHHHHHHHHHHcCCceEEEECC--eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhcc
Q 008535           17 NVPLTPIDFLERAAHVYGDATSIIYGT--VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAG   94 (562)
Q Consensus        17 ~~~~ti~~~l~~~a~~~p~~~a~~~~~--~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G   94 (562)
                      ....|+.+++.++++++|+++|+++.+  +++||+|+.+.++++|+.|...|++.||+|+++|+|.+|++.+.++++++|
T Consensus        74 r~~~ti~~~F~~~vrr~p~k~aii~~~~~~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lWlGLaKlG  153 (649)
T KOG1179|consen   74 RERRTIAELFLSQVRRQPDKPAIIYEGPFQSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALWLGLAKLG  153 (649)
T ss_pred             ccCCcHHHHHHHHHHhCCCccEEEEeCCCceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHHHhHHhhC
Confidence            356799999999999999999999977  699999999999999999999999999999999999999999999999999


Q ss_pred             ceEEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCC
Q 008535           95 AVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGS  174 (562)
Q Consensus        95 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (562)
                      ++...||++...+.+.+.++.+++++++++.+..+.+.+..+.+...     ......++...            .+.+.
T Consensus       154 v~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~-----~i~~~~~~~~~------------~~~g~  216 (649)
T KOG1179|consen  154 VITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKN-----GIHVFSLGPTS------------VPDGI  216 (649)
T ss_pred             ceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhc-----cceEEecCCCC------------CCchH
Confidence            99999999999999999999999999999999888777764333221     12222222111            12233


Q ss_pred             CchhhhhhcccCcc---ccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccch
Q 008535          175 LDYNDLLEMGKADF---EMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCN  251 (562)
Q Consensus       175 ~~~~~~~~~~~~~~---~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~  251 (562)
                      .++...++..+.++   ....+.+..++++.+|||||||.||+.++||...+..+......+++++.|++..++|++|..
T Consensus       217 ~~L~~~l~~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g~~~~DvvY~~lPLYHsa  296 (649)
T KOG1179|consen  217 ESLLAKLSAAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFGMTADDVVYTTLPLYHSA  296 (649)
T ss_pred             HHHHHhhcccccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCccceEEEcchhHHHH
Confidence            33333333333222   222334567999999999999999999999999888888888999999999999999999998


Q ss_pred             hhHH-HHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHH
Q 008535          252 GWCC-TWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQ  330 (562)
Q Consensus       252 gl~~-~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~  330 (562)
                      +... .-.++..|+++++-.+|+..++|+.-.+|++|++.-.-.+.|.|++.+.....+-..+|..+-.|  +.++.++.
T Consensus       297 a~ilGi~~~l~~GaT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~er~HkVRla~GNG--LR~diW~~  374 (649)
T KOG1179|consen  297 AGILGIGGCLLHGATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEERQHKVRLAYGNG--LRPDIWQQ  374 (649)
T ss_pred             HHHHHHHHHHhcCceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhhcCceEEEEecCC--CCchHHHH
Confidence            8765 56677888899988899999999999999999999999999999999988878888888887665  77888988


Q ss_pred             HH-hcCCe-eeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccC--------CcccccCC
Q 008535          331 VA-NFGFN-IRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQN--------TMKSVPHD  400 (562)
Q Consensus       331 ~~-~~~~~-l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~--------~~~~~~~~  400 (562)
                      |. +||.. +.+.||+||......... ..     .......   ........++ .+--.|++        .|-..++.
T Consensus       375 Fv~RFg~~~IgE~YgaTEgn~~~~N~d-~~-----vGA~G~~---~~~~~~l~p~-~LIk~D~~t~E~iRd~~G~Ci~~~  444 (649)
T KOG1179|consen  375 FVKRFGIIKIGEFYGATEGNSNLVNYD-GR-----VGACGFM---SRLLKLLYPF-RLIKVDPETGEPIRDSQGLCIPCP  444 (649)
T ss_pred             HHHHcCCCeEEEEeccccCcceeeeec-Cc-----cccccch---hhhhhhccce-EEEEecCCCCceeecCCceEEECC
Confidence            87 67765 999999999754333221 10     0000000   0001111112 11112333        34444556


Q ss_pred             CCceeEEEEc----ch-hhhhhhcCCchhhHhhh-----c--cceeeeCceeEEcCCCcEEEeccccceeecCCeEechH
Q 008535          401 GKTLGEVMFR----AN-TVMLGYFKNPKATEEAF-----R--NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSL  468 (562)
Q Consensus       401 ~~~~Gel~v~----~~-~~~~gy~~~~~~~~~~~-----~--~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~  468 (562)
                      .||.|.++-+    .| .-|.||.+....++++.     .  |-||.|||+-.+|+.|.+||.+|..|.++.+|++|+..
T Consensus       445 ~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rDVFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFRWKGENVsTt  524 (649)
T KOG1179|consen  445 PGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRDVFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFRWKGENVSTT  524 (649)
T ss_pred             CCCCceEEEEeccCCchhhhccccCchhhhhhhhHHhhhccCcEEEeeCcEEEEecCCcEEEeccCCCceeecCCcccHH
Confidence            6677865432    22 33889999777776654     3  55999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCceeEEEEeeeCCCCCc-eeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchH
Q 008535          469 EVEAVLLSNPKVLEAAVVGKVDDQLKE-VPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQK  546 (562)
Q Consensus       469 ~iE~~l~~~~~v~~~~v~~~~~~~~~~-~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r  546 (562)
                      |||++|..+..+.|+.|.++.-+.... .=.|.|+..+..+.+.+++-+++++.||+|.+|.++.+.+ +++|.+=|..|
T Consensus       525 EVe~~l~~~~~~~dv~VYGV~VP~~EGRaGMAaI~~~p~~~~d~~~l~~~l~~~LP~YA~P~FlRl~~~i~~TgTFKl~K  604 (649)
T KOG1179|consen  525 EVEDVLSALDFLQDVNVYGVTVPGYEGRAGMAAIVLDPTTEKDLEKLYQHLRENLPSYARPRFLRLQDEIEKTGTFKLQK  604 (649)
T ss_pred             HHHHHHhhhccccceeEEEEecCCccCccceEEEEecCcccchHHHHHHHHHhhCccccchHHHHHHhhhhcccchhhHH
Confidence            999999999999999999987765333 2335555788888899999999999999999999999766 99999999999


Q ss_pred             HHHhhh
Q 008535          547 FVLRGK  552 (562)
Q Consensus       547 ~~l~~~  552 (562)
                      ..|.+.
T Consensus       605 ~~L~~e  610 (649)
T KOG1179|consen  605 TELQKE  610 (649)
T ss_pred             HHHHHc
Confidence            998654

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=100.00  E-value=3e-55  Score=445.95  Aligned_cols=398  Identities=27%  Similarity=0.370  Sum_probs=312.5

Q ss_pred             HHHHHHHcCCceEEEE-CCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEEecCCCC
Q 008535           26 LERAAHVYGDATSIIY-GTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRL  104 (562)
Q Consensus        26 l~~~a~~~p~~~a~~~-~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~  104 (562)
                      |+++|+++|+++|+++ .++.+||+||++++.++|..|.++|+++||+|+++++|+++++++++||+++|++++|++|.+
T Consensus         1 f~~~a~~~pd~~a~~~~~~~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~~v~l~~~~   80 (417)
T PF00501_consen    1 FERQAQRYPDRIALIDDEGRSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAIPVPLDPSL   80 (417)
T ss_dssp             HHHHHHHSTTSEEEEETTTEEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS
T ss_pred             ChhHHhhCCCceEEEECCCEEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeeccccccccccccccccc
Confidence            6889999999999999 899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhhCCceEEEE----eccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCchhhh
Q 008535          105 DSATLASILRQLEAKIIFV----DYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDL  180 (562)
Q Consensus       105 ~~~~l~~~l~~~~~~~ii~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (562)
                      +.+++.++++.++++++|+    +......+.........      ...++.++.....                ....+
T Consensus        81 ~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~----------------~~~~~  138 (417)
T PF00501_consen   81 SEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFKQEDP------SSSIIILDRDDLP----------------KKEAL  138 (417)
T ss_dssp             SHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHTTSTT------TEEEEEESHSSCT----------------TCHHH
T ss_pred             ccccccccccccceeEEEEeccccccccccchhhhccccc------ccccccccccccc----------------ccccc
Confidence            9999999999999999998    22221222222211110      1223333222110                00111


Q ss_pred             hhcccCccccCCC-CCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHH--hhcCCCCCCeeeeecccccchhh-HHH
Q 008535          181 LEMGKADFEMMQP-NHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQI--SRCDVRDMPVFLWTLDMFRCNGW-CCT  256 (562)
Q Consensus       181 ~~~~~~~~~~~~~-~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~--~~~~~~~~~~~l~~~pl~~~~gl-~~~  256 (562)
                      .......... .+ ..++++++++|||||||.||+|.++|+++........  ..++++  |++++.+|++|.+|+ ...
T Consensus       139 ~~~~~~~~~~-~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~~~~  215 (417)
T PF00501_consen  139 KSASLSDEPQ-SPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGLG--DRILSFLPLSHIFGLISAL  215 (417)
T ss_dssp             HHHHHCHCSH-STTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTTT--TEEEESS-TTSHHHHHHHH
T ss_pred             cccccccccc-cCCCCccceeEeeccccccccccccccccccccccccccccccccccC--ceEEeeccccccccccccc
Confidence            1100000000 00 0467999999999999999999999999988877754  223333  699999999999999 778


Q ss_pred             HHhHhhceEEEEeccCC---HHHHHHHHHhcCeEEEEcchHHHHHHHhccccc----cccccceEEEEEeCCCChHHHHH
Q 008535          257 WAMAAVGGINVCIRTVS---AKIIFDSILIHKVTHLCGQPRILNMIANASASD----QNQLQRKVIIVIAGVLPTIEVLE  329 (562)
Q Consensus       257 ~~~~~~g~~~v~~~~~~---~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~----~~~l~~l~~i~~~g~~l~~~~~~  329 (562)
                      +.++..|+++++.+...   ++.+++.++++++++++++|.+++.|++..+..    ...++++|.++++|++++++..+
T Consensus       216 ~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~  295 (417)
T PF00501_consen  216 LAALFSGATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEKTKISKKDLSSLRTVISGGEPLPPDLLR  295 (417)
T ss_dssp             HHHHHCTSEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTTGTT-SEEEEESST-CHHHHH
T ss_pred             cccccccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccccccccccCChhhcc
Confidence            88899999999987654   477899999999999999999999998843222    34788899999999999999999


Q ss_pred             HHHh-cCC-eeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEE
Q 008535          330 QVAN-FGF-NIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEV  407 (562)
Q Consensus       330 ~~~~-~~~-~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel  407 (562)
                      .+++ ++. ++++.||+||++.+++....          .........+|.|.++. .++|++.+++++++.+  +.|||
T Consensus       296 ~~~~~~~~~~i~~~YG~tE~~~~~~~~~~----------~~~~~~~~~~G~~~~~~-~~~ivd~~~~~~~~~g--~~Gei  362 (417)
T PF00501_consen  296 RLRKAFGNAPIINLYGSTETGSIATIRPP----------EDDIEKPGSVGKPLPGV-EVKIVDPNTGEPLPPG--EPGEI  362 (417)
T ss_dssp             HHHHHHTTSEEEEEEEEGGGSSEEEEEET----------TTHHSSTTSEBEESTTE-EEEEECTTTSSBESTT--SEEEE
T ss_pred             ccccccccccceecccccccceeeecccc----------ccccccccccccccccc-cccccccccccccccc--ccccc
Confidence            9985 465 89999999999988865420          01111234567777777 8899988778888776  67999


Q ss_pred             EEcchhhhhhhcCCchhhHhhhcc-ceeeeCceeEEcCCCcEEEeccccceeecC
Q 008535          408 MFRANTVMLGYFKNPKATEEAFRN-GWYHTGDLAVRNPDGYVQMKDRRKDIIISG  461 (562)
Q Consensus       408 ~v~~~~~~~gy~~~~~~~~~~~~~-g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~  461 (562)
                      +|+|+.++.||+++++.+.+.|.+ |||+|||+|++|+||.++++||.||+||++
T Consensus       363 ~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~~~~~GR~~~~i~~~  417 (417)
T PF00501_consen  363 VIRGPNVFSGYYNDPELTAEAFIDDGWYRTGDLGRLDEDGYLYILGRSDDMIKVR  417 (417)
T ss_dssp             EEESTTSBSEETTBHHHHHHHEETTSEEEEEEEEEEETTSEEEEEEEGSCEEEET
T ss_pred             cccCCccceeeeccccccccccccccceecceEEEECCCCeEEEEEeeCCEEEeC
Confidence            999999999999999999999976 899999999999999999999999999964

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=100.00  E-value=9e-52  Score=419.39  Aligned_cols=393  Identities=25%  Similarity=0.258  Sum_probs=324.3

Q ss_pred             cHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEEecCCCCCHHHHHHHHhhCCceEEEEec
Q 008535           47 SWRQTHQICLKLASALAQ-LKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDY  125 (562)
Q Consensus        47 Ty~el~~~~~~~a~~L~~-~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~  125 (562)
                      ||+||.+.+.++|+.|.+ .|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++.+++++++++.
T Consensus         1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~   80 (408)
T TIGR01733         1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS   80 (408)
T ss_pred             CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence            899999999999999998 9999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCchhhhhhcccCccccCCCCCCCCceEEEec
Q 008535          126 QFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYT  205 (562)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~T  205 (562)
                      .....+....            .....+.....                    ..................+++++++||
T Consensus        81 ~~~~~~~~~~------------~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~i~~T  128 (408)
T TIGR01733        81 ALASRLAGLV------------LPIILVDPLEL--------------------AALDDAPAPPPPDAPSGPDDLAYVIYT  128 (408)
T ss_pred             chhhhccccC------------CceEEechhhh--------------------hhcccccccccccCCCCCCCcEEEEEc
Confidence            7655432211            01111110000                    000000000000011346799999999


Q ss_pred             cCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHHHHHhHhhceEEEEeccC---CHHHHHHHHH
Q 008535          206 SGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCIRTV---SAKIIFDSIL  282 (562)
Q Consensus       206 SGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~~~~~~~~g~~~v~~~~~---~~~~~~~~i~  282 (562)
                      |||||.||+|.+||+++..........+.+..++++++..|++|.+++...+.++..|+++++.+..   .+..+.+.++
T Consensus       129 SGTtG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~  208 (408)
T TIGR01733       129 SGSTGRPKGVVVTHRSLVNLLAWLARRYGLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIA  208 (408)
T ss_pred             CCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHH
Confidence            9999999999999999999988888888999999999999999999999999999999999987654   3688999999


Q ss_pred             hcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHH-hcC-CeeeccccCccccCcccccccCCCC
Q 008535          283 IHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVA-NFG-FNIRHAYGMTEVLGPAIVRQWKPEG  360 (562)
Q Consensus       283 ~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~-~~~-~~l~~~YG~tE~~~~~~~~~~~~~~  360 (562)
                      +++++.+.++|.+++.|++...   ..++++|.++.+|+++++++.+.++ .++ ..+++.||+||+++++.........
T Consensus       209 ~~~~t~l~~~p~~~~~l~~~~~---~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~  285 (408)
T TIGR01733       209 EHPVTVLNLTPSLLALLAAALP---PALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADD  285 (408)
T ss_pred             HcCceEEEeCHHHHHHHHHhhh---hcccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccc
Confidence            9999999999999999988764   5688999999999999999999998 455 8999999999998776533222111


Q ss_pred             CCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhhhhhhcCCchhhHhhhcc-------c-
Q 008535          361 ESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRN-------G-  432 (562)
Q Consensus       361 ~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-------g-  432 (562)
                      ..      .. ....+|.+.++. .++|++.+ +..++.+  +.|||+++|+.++.||+++++.+...|..       | 
T Consensus       286 ~~------~~-~~~~~G~~~~~~-~~~i~~~~-~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~  354 (408)
T TIGR01733       286 AP------RE-SPVPIGRPLANT-RLYVLDDD-LRPVPVG--VVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGA  354 (408)
T ss_pred             cC------Cc-cccccCcccCCc-eEEEECCC-CCCCCCC--CceEEEecCccccccccCChhhhhcceeeCCCCCCCCc
Confidence            10      00 245678888887 88888875 6766655  77999999999999999999988888732       2 


Q ss_pred             -eeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEE
Q 008535          433 -WYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAV  485 (562)
Q Consensus       433 -~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v  485 (562)
                       ||+|||+|++|++|++++.||.+|+|+.+|.+++|.+||+.+..++.|.+++|
T Consensus       355 ~~~~TGDl~~~d~~g~~~~~gR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v  408 (408)
T TIGR01733       355 RLYRTGDLVRYLPDGNLEFLGRIDDQVKIRGYRIELGEIEAALLRHPGVREAVV  408 (408)
T ss_pred             eEEECCceEEEcCCCCEEEeeccCCEEEeCeEEechHHHHHHHhcCcchhhhcC
Confidence             99999999999999999999999999999999999999999999999998864

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=2.5e-47  Score=378.75  Aligned_cols=320  Identities=24%  Similarity=0.301  Sum_probs=270.2

Q ss_pred             CCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHHHHHhHhhceEEEEe---c
Q 008535          194 NHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCI---R  270 (562)
Q Consensus       194 ~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~~~~~~~~g~~~v~~---~  270 (562)
                      ..++|+++++|||||||.||+|.++|+++..........+  ...++++..+|++|.+++...+..+..|++.++.   .
T Consensus        32 ~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~--~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~~~~  109 (358)
T PRK07824         32 PIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL--GGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVELDVSA  109 (358)
T ss_pred             CCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc--CCCCeEEEECChHHHHHHHHHHHHHHcCCeEEecCcCC
Confidence            3467999999999999999999999999888776655443  3557889999999999998888888889988873   3


Q ss_pred             cCCHHHHHHHHHhcC--eEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHHhcCCeeeccccCcccc
Q 008535          271 TVSAKIIFDSILIHK--VTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVL  348 (562)
Q Consensus       271 ~~~~~~~~~~i~~~~--~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~~~~~~l~~~YG~tE~~  348 (562)
                      .+++..+++.+++++  .++...+|..+..++..... ...+++++.+++||++++++..+.+.+.+.++++.||+||++
T Consensus       110 ~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~~-~~~~~~l~~i~~gG~~l~~~~~~~~~~~~~~v~~~YG~TE~~  188 (358)
T PRK07824        110 GFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPAA-TAALAELDAVLVGGGPAPAPVLDAAAAAGINVVRTYGMSETS  188 (358)
T ss_pred             CcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCccc-cCCcccceEEEECCCCCCHHHHHHHHhcCCcEEecccCCccC
Confidence            578999999999998  56667788888777665432 245789999999999999999999888899999999999986


Q ss_pred             CcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhhhhhhcCCchhhHhh
Q 008535          349 GPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEA  428 (562)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~  428 (562)
                      +.+..                      .|.+.++. .+++  .+            |||+++|+.++.||++++..+. .
T Consensus       189 ~~~~~----------------------~G~~~~g~-~v~i--~~------------Gei~v~g~~~~~gY~~~~~~~~-~  230 (358)
T PRK07824        189 GGCVY----------------------DGVPLDGV-RVRV--ED------------GRIALGGPTLAKGYRNPVDPDP-F  230 (358)
T ss_pred             CCcCc----------------------CceeCCCC-EEEe--cC------------CEEEEecCccccccCCCccccc-c
Confidence            54321                      23333333 3333  21            8999999999999999876432 1


Q ss_pred             hccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCCC
Q 008535          429 FRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGRE  508 (562)
Q Consensus       429 ~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~  508 (562)
                      ..+|||+|||+|++ ++|.+++.||.||+||.+|.+|+|.+||..|.++|+|.+++|++.+++..++.++++++...+..
T Consensus       231 ~~~g~~~TGDl~~~-~~g~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~  309 (358)
T PRK07824        231 AEPGWFRTDDLGAL-DDGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGGPA  309 (358)
T ss_pred             cCCCceecccEEEE-eCCEEEEEeccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEecCCCCCceEEEEEEEeCCCCC
Confidence            24789999999999 79999999999999999999999999999999999999999999999888999999998877666


Q ss_pred             CCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhh
Q 008535          509 ASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNA  555 (562)
Q Consensus       509 ~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~  555 (562)
                      ...+++++++++.++.+++|..+.+++ ||+|++||++|++|++.|.+
T Consensus       310 ~~~~~i~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~  357 (358)
T PRK07824        310 PTLEALRAHVARTLDRTAAPRELHVVDELPRRGIGKVDRRALVRRFAG  357 (358)
T ss_pred             cCHHHHHHHHHhhCccccCCCEEEEecCCCCCCCccccHHHHHHHhhc
Confidence            788999999999999999999988665 99999999999999999865

>PTZ00297 pantothenate kinase; Provisional

Probab=100.00  E-value=1.4e-45  Score=405.63  Aligned_cols=475  Identities=13%  Similarity=0.104  Sum_probs=346.6

Q ss_pred             CChHHHHHHHHHHcCCceEEEEC---C--eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhcc
Q 008535           20 LTPIDFLERAAHVYGDATSIIYG---T--VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAG   94 (562)
Q Consensus        20 ~ti~~~l~~~a~~~p~~~a~~~~---~--~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G   94 (562)
                      .|+.++|++.++++|+++++...   +  ..+||+|+.+++.++|..|.+.|+++||+|+|+++|+++|+++.+||+++|
T Consensus       427 ~Tl~dll~~~a~~~pd~~al~~~~~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewvia~lA~~~~G  506 (1452)
T PTZ00297        427 RSLGEMWERSVTRHSTFRCLGQTSESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILEVACALYG  506 (1452)
T ss_pred             CCHHHHHHHHHHHCCCCeEEEEeccCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence            58999999999999999999632   2  579999999999999999999999999999999999999999999999999


Q ss_pred             ceEEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCC
Q 008535           95 AVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGS  174 (562)
Q Consensus        95 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (562)
                      ++.+|+.+  +.+++.+++++++++++|++.+..+.+.....   .     ....++.++......  ............
T Consensus       507 aV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~---~-----~Lr~IIv~d~~~~~~--~~~~~~~~~i~~  574 (1452)
T PTZ00297        507 FTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSVAAILTCRS---R-----KLETVVYTHSFYDED--DHAVARDLNITL  574 (1452)
T ss_pred             CEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHHHHHHhhcc---c-----CCcEEEEECCCcccc--cccccccCCcce
Confidence            99999975  46789999999999999999776665543221   1     155666664311000  000000001124


Q ss_pred             CchhhhhhcccCccc-cCCCCCCCCceEEEe---ccCCCCCCCceEeechhHHHHHHHHHhhc---CCCCCCeeeeeccc
Q 008535          175 LDYNDLLEMGKADFE-MMQPNHECDPISVNY---TSGSTGDPKGVVYSHRGAYLNSLAQISRC---DVRDMPVFLWTLDM  247 (562)
Q Consensus       175 ~~~~~~~~~~~~~~~-~~~~~~~~~~a~i~~---TSGtTG~PK~v~~t~~~l~~~~~~~~~~~---~~~~~~~~l~~~pl  247 (562)
                      .+|.++.+.+..... ...+..++|++.|+|   ||||||.||||++||+|+++++.......   ...++|++++.+|+
T Consensus       575 ~s~~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~~D~~Ls~LPL  654 (1452)
T PTZ00297        575 IPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLMVHFTPF  654 (1452)
T ss_pred             eeHHHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCCCCEEEEechH
Confidence            567888776532111 112236788998986   99999999999999999999888765432   35678999999999


Q ss_pred             ccchhhHHHHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccc-------------------
Q 008535          248 FRCNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQN-------------------  308 (562)
Q Consensus       248 ~~~~gl~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~-------------------  308 (562)
                      +|+++....+.++..|+++..   +++..+++.|++++||+++++|.++..+.........                   
T Consensus       655 aHI~er~~~~~~l~~G~~I~~---~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~A~~~k~~  731 (1452)
T PTZ00297        655 AMLFNRVFVLGLFAHGSAVAT---VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRSR  731 (1452)
T ss_pred             HHHHHHHHHHHHHHcCCEEEe---CCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            999997777777888888763   4789999999999999999999999988653211000                   


Q ss_pred             -----c------------------ccceEEEEEeCC--CChHHHHHHHHhcCCeeeccccCccccCcccccccCCCCCCC
Q 008535          309 -----Q------------------LQRKVIIVIAGV--LPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESS  363 (562)
Q Consensus       309 -----~------------------l~~l~~i~~~g~--~l~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~  363 (562)
                           .                  -..+|.+++||.  +++     .+...++++..+||+||+.   +....   ... 
T Consensus       732 ~~~~g~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~-----~~l~~~i~i~~g~glTE~~---~~~~~---~~~-  799 (1452)
T PTZ00297        732 LINIHRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTS-----FSLLEHISVCYVPCLREVF---FLPSE---GVF-  799 (1452)
T ss_pred             HHhcCCCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccC-----hHHhCCceEEEecceEEee---eecCC---CCc-
Confidence                 0                  035888988873  343     3333478888999999942   11110   000 


Q ss_pred             cCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhhhhhhcCCchhhHhhhccceeeeCceeEEc
Q 008535          364 ALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRN  443 (562)
Q Consensus       364 ~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~  443 (562)
                                ...|.|.+++ ++++.+.++....    ...|||+++       |+++|+.|.+. .+||+         
T Consensus       800 ----------~~~G~Plpgv-EvKI~~~~E~~~~----~~~GEIlvr-------~~kdpe~T~e~-~~gW~---------  847 (1452)
T PTZ00297        800 ----------CVDGTPAPSL-QVDLEPFDEPSDG----AGIGQLVLA-------KKGEPRRTLPI-AAQWK---------  847 (1452)
T ss_pred             ----------ccCCeecCce-EEEEcccccccCC----CCCCeEEEE-------ECCChHHHHHh-hCcCc---------
Confidence                      0127777777 7888764332111    134999995       35788888763 35664         


Q ss_pred             CCCcEEEeccccceee-cCCeEechHHHHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCCC--------------
Q 008535          444 PDGYVQMKDRRKDIII-SGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGRE--------------  508 (562)
Q Consensus       444 ~~g~l~~~GR~~d~i~-~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~--------------  508 (562)
                      +||.++|+||.+|+|| .+|++|.|+.||+.+..+|.|.+++|++...+.    ++|+|++++..-              
T Consensus       848 ~dG~L~IidRkKdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~k~----lvALVvpd~e~l~~~wa~~~gi~~~~  923 (1452)
T PTZ00297        848 RDRTLRLLGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPSRP----IIAIVSPNRDTVEFEWRQSHCMGEGG  923 (1452)
T ss_pred             cCCeEEEEeccccceECCCCcEEcHHHHHHHHhcCCCccEEEEEecCCCc----eEEEEEeCHHHHHHHHHHHcCCCccc
Confidence            6999999999999999 899999999999999999999999999865543    788888763110              


Q ss_pred             -----CCHHH--------HHHHH---h--ccCCCCCCCcEEEeec--c-----cCCCCCcchHHHHhhhhhhhc
Q 008535          509 -----ASPEE--------LVTFC---G--DELPSCMVPRAIFFED--I-----PVNSTGKVQKFVLRGKVNATA  557 (562)
Q Consensus       509 -----~~~~~--------l~~~~---~--~~l~~~~~p~~i~~~~--l-----P~t~~GKv~r~~l~~~~~~~~  557 (562)
                           .+..+        +.+.+   .  ..+..+.+++.+.+.+  +     -+|++.|+.|..+.+.|.+.-
T Consensus       924 ~~~~~~~~~el~~~~~~~v~~~i~~V~~~n~l~~~ei~k~~~Ll~~~Ft~enGlLTPTlKlKR~~I~~kY~~~I  997 (1452)
T PTZ00297        924 GPARQLGWTELVAYASSLLTADFACIAKENGLHPSNVPEYVHLHPHAFKDHSTFLTPYGKIRRDAVHSYFSSVI  997 (1452)
T ss_pred             cccccCCHHHHHHhHHHHHHHHHHHHHHHhCcCccceeeEEEEeCCCCCCCCCcCChhhhhhHHHHHHHHHHHH
Confidence                 01222        22222   1  1245677887777644  3     289999999999999998764

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=5.1e-38  Score=336.54  Aligned_cols=408  Identities=21%  Similarity=0.201  Sum_probs=333.9

Q ss_pred             CCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEE
Q 008535           19 PLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLS   98 (562)
Q Consensus        19 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v   98 (562)
                      ..++..++.+.+...|+++|+...+.++||+++..+++++|..|.+.|+++++.|+++++.+++.+++++|++++|+.++
T Consensus       226 ~~~i~~~f~~~a~~~p~~~a~~~~~~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~l~ilkaG~~yv  305 (642)
T COG1020         226 RLTIHLLFEEQAATTPDAVALVRGGQQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYV  305 (642)
T ss_pred             cchHHHHHHHHHHhCCCceeEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHHHHHHhcCCeEe
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCchh
Q 008535           99 ALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYN  178 (562)
Q Consensus        99 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (562)
                      |+++.++.+++..+++..+++.+++..........             .+. +.++....                    
T Consensus       306 P~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~-------------~~~-~~~~~~~~--------------------  351 (642)
T COG1020         306 PLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVG-------------LPG-LALDDALS--------------------  351 (642)
T ss_pred             cCCCCChHHHHHHHHhhcCccEEEecccccccccc-------------CCc-cccccccc--------------------
Confidence            99999999999999999999999998332211000             000 00000000                    


Q ss_pred             hhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHHHHH
Q 008535          179 DLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWA  258 (562)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~~~~  258 (562)
                          .............+++.+|++|||||||.||||..+|+++.....+....+.+...|+++...++.+.......+.
T Consensus       352 ----~~~~~~~~~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~~~~~~d~~l~~~s~~fD~~~~~~f~  427 (642)
T COG1020         352 ----EIPDTDPIPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALASLSFDASVFEIFG  427 (642)
T ss_pred             ----cCCccCcccccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhcCCCcccEEeecCCcccchhHHHHHH
Confidence                0000000011234578999999999999999999999998887777777799999999999999988888889999


Q ss_pred             hHhhceEEEEecc---CCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccc--cccccceEEEEEeCCCChHHHHHHHHh
Q 008535          259 MAAVGGINVCIRT---VSAKIIFDSILIHKVTHLCGQPRILNMIANASASD--QNQLQRKVIIVIAGVLPTIEVLEQVAN  333 (562)
Q Consensus       259 ~~~~g~~~v~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~--~~~l~~l~~i~~~g~~l~~~~~~~~~~  333 (562)
                      ++..|+.++..+.   .++..+.+.+.+++++++..+|..+..++......  ......++.+++||+.++.+....+..
T Consensus       428 ~l~~G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~  507 (642)
T COG1020         428 ALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQRLLQ  507 (642)
T ss_pred             HHhCCCEEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhccccCCcccccEEEEcCCCCCHHHHHHHHH
Confidence            9999999998863   68999999999999999999999999998763222  222335999999999999999988774


Q ss_pred             c---CCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEc
Q 008535          334 F---GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFR  410 (562)
Q Consensus       334 ~---~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~  410 (562)
                      .   ...+.+.||.||+...+...........          ....|.|.++. .+.|.+ +....++.+  ..||+++.
T Consensus       508 ~~~~~~~l~~~ygpTe~~~~~~~~~~~~~~~~----------~~piG~p~~n~-~~~ild-~~~~~~p~g--v~gel~i~  573 (642)
T COG1020         508 LAALARRLLNLYGPTEATLDAPSFPISAELES----------RVPIGRPVANT-QLYILD-QGLRPLPLG--VPGELYIA  573 (642)
T ss_pred             hccccceEeeccCccHHhhheeeEEcccccCC----------CCCcceeeCCC-eEEEEC-CCCCcCCCC--CCeeeEEC
Confidence            3   3689999999996554443322111110          34667777775 777777 477888887  56999999


Q ss_pred             chhhhhhhcCCchhhHhhhccc-eeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCC
Q 008535          411 ANTVMLGYFKNPKATEEAFRNG-WYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNP  478 (562)
Q Consensus       411 ~~~~~~gy~~~~~~~~~~~~~g-~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~  478 (562)
                      |.++..||+++++.+..+|... +|+|||++++.+||.+.++||.|+++|++|.++.+.+||..+.++|
T Consensus       574 g~~~a~gy~~~p~lt~~~f~~~~~y~tgD~~r~~~dg~~e~lgr~D~qvki~g~Riel~eie~~l~~~~  642 (642)
T COG1020         574 GLGLALGYLNRPDLTAERFIALRLYRTGDLARPLADGALEYLGRKDSQVKIRGFRIELGEIEAALAEQP  642 (642)
T ss_pred             CcchhhhhcCChhhhHHHhhhccCccCCCeeeECCCCeEEEeccccceeEeceEecCcHHHHHHHhcCC
Confidence            9999999999999999999764 9999999999999999999999999999999999999999998764

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=100.00  E-value=7.8e-39  Score=315.26  Aligned_cols=285  Identities=21%  Similarity=0.185  Sum_probs=224.0

Q ss_pred             CCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCC--CCCeeeeecccccchhhH-HHHHhHhhceEEEEeccCC
Q 008535          197 CDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVR--DMPVFLWTLDMFRCNGWC-CTWAMAAVGGINVCIRTVS  273 (562)
Q Consensus       197 ~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~--~~~~~l~~~pl~~~~gl~-~~~~~~~~g~~~v~~~~~~  273 (562)
                      +..++++|||||||.||||.+||+++...+......+++.  +.+++++.+|++|.+|+. ..+.++..|++++..+.++
T Consensus        95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~~~  174 (386)
T TIGR02372        95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAAAP  174 (386)
T ss_pred             CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCCCC
Confidence            4678999999999999999999999988887777777664  346799999999999975 4566777898888888888


Q ss_pred             HHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHHhcCC-eeeccccCccccCccc
Q 008535          274 AKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVANFGF-NIRHAYGMTEVLGPAI  352 (562)
Q Consensus       274 ~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~~~~~-~l~~~YG~tE~~~~~~  352 (562)
                      +..+++.++.+  ++++++|.+++.|.+..    ..+++++. ++||++++++..+.+++.+. ++++.||+||++++++
T Consensus       175 ~~~~l~~i~~~--t~~~~~P~~l~~l~~~~----~~l~slr~-i~gGa~l~~~l~~~~~~~g~~~v~~~YG~TEt~~i~~  247 (386)
T TIGR02372       175 ASGIMRHARPG--DLIVGTPFIWEQLADLD----YRLPGVVG-VSSGAPSTAATWRCLLAAGLARLLEVYGATETGGIGL  247 (386)
T ss_pred             hHHHHHhhccC--CEEEECcHHHHHHHhhC----cCCCccee-EecCCCCCHHHHHHHHHhcccchhheecccccccccc
Confidence            88888887654  79999999999997653    34667775 67899999999999987664 6999999999987544


Q ss_pred             ccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhhhhhhcCCchhhHhhhccc
Q 008535          353 VRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNG  432 (562)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g  432 (562)
                      ...  +               ...+.+.+   ++++... ++          .+   .|+                  ..
T Consensus       248 ~~~--~---------------~~~~~~~p---~~~~~~~-~~----------~~---~g~------------------~~  275 (386)
T TIGR02372       248 REA--P---------------DDPFRLLP---DLACFAD-TL----------SS---AGL------------------AR  275 (386)
T ss_pred             ccC--C---------------CCCcccCC---CccccCC-Cc----------cC---CCc------------------cc
Confidence            311  0               01122222   2222211 11          00   011                  12


Q ss_pred             eeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCCCCC--
Q 008535          433 WYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREAS--  510 (562)
Q Consensus       433 ~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~~--  510 (562)
                      |++|||++++|++|++++.||.||+||++|++|+|.+||++|.++|+|.+++|..     .++++.++|++.++....  
T Consensus       276 ~~~tgD~g~~d~~G~l~i~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~~~v~~-----~g~~~~a~vv~~~~~~~~~~  350 (386)
T TIGR02372       276 RLDLQDRLAWDKDGGFTILGRKDEILQVGGVNVSPGHVRDILERNPRVRAAAVRL-----DGRRLKAFIVVAEDADEAEL  350 (386)
T ss_pred             eeecCceEEEcCCCcEEEecccCCEEEECCEEEcHHHHHHHHHcCCCceEEEEEc-----CCceEEEEEEECCCCChHHH
Confidence            6899999999999999999999999999999999999999999999999998863     356788998887654332  


Q ss_pred             HHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcch
Q 008535          511 PEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQ  545 (562)
Q Consensus       511 ~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~  545 (562)
                      .++++++++++++.|++|..+.+.+ ||+|++||++
T Consensus       351 ~~~l~~~~~~~L~~~~~P~~i~~~~~lP~t~~GKi~  386 (386)
T TIGR02372       351 EIELRATAARHLPAPARPDRFRFGTELPRTGAGKLA  386 (386)
T ss_pred             HHHHHHHHHHhCCCCCCCcEEEEcccCCCCCCCCcC
Confidence            4689999999999999999988765 9999999985

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=100.00  E-value=1.1e-36  Score=308.27  Aligned_cols=320  Identities=17%  Similarity=0.183  Sum_probs=234.2

Q ss_pred             CCCCceEEEeccCCCCCCCceEeechhHHHHHHHH---HhhcCCCCCCeeeeecccccc-hhhHHHHHhHhhceEEEEec
Q 008535          195 HECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQ---ISRCDVRDMPVFLWTLDMFRC-NGWCCTWAMAAVGGINVCIR  270 (562)
Q Consensus       195 ~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~---~~~~~~~~~~~~l~~~pl~~~-~gl~~~~~~~~~g~~~v~~~  270 (562)
                      ..++++.+++||||||.||++.++|.++..+....   ...+++.++|++++..+..+. .++...+.....|++++..+
T Consensus        73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  152 (422)
T TIGR02155        73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPIS  152 (422)
T ss_pred             ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecC
Confidence            34578889999999999999999999976554332   334578899998887665433 23334455667788888777


Q ss_pred             cCCHHHHHHHHHhcCeEEEEcchHHHHHHHhcccccccc--ccceEEEEEeCCCChHHHHHHHH-hcCCeeeccccCccc
Q 008535          271 TVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQ--LQRKVIIVIAGVLPTIEVLEQVA-NFGFNIRHAYGMTEV  347 (562)
Q Consensus       271 ~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~--l~~l~~i~~~g~~l~~~~~~~~~-~~~~~l~~~YG~tE~  347 (562)
                      ..++..+++.|++++|++++++|+++..|++........  ..++|.++++||++++++.+.++ .+++++++.||+||+
T Consensus       153 ~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge~l~~~~~~~i~~~~g~~v~~~YG~tE~  232 (422)
T TIGR02155       153 GGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAEPWTNAMRKEIEARLGMKATDIYGLSEV  232 (422)
T ss_pred             CCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcccCceEEEEEeCCcCCHHHHHHHHHHhCCceEecccchhh
Confidence            778899999999999999999999999998765433322  35899999999999999999998 569999999999998


Q ss_pred             cCcccccccCCCCCCCcCCccccccccccCcccc-ccccceecccCCcccccCCCCceeEEEEcchhhhhhhcCCchhhH
Q 008535          348 LGPAIVRQWKPEGESSALDHEHEMTKHREGLNNL-LIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATE  426 (562)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~  426 (562)
                      ++..........               ..|.+.. ....++|+|.+++.+++.|  +.|||++++.            +.
T Consensus       233 ~~~~~~~~~~~~---------------~~g~~~~~~~~~~eivd~~~g~~v~~G--e~Gelvvt~~------------~~  283 (422)
T TIGR02155       233 IGPGVAMECVET---------------QDGLHIWEDHFYPEIIDPHTGEVLPDG--EEGELVFTTL------------TK  283 (422)
T ss_pred             cCCceeeccccc---------------CCCceEecCeeEEEEECCCCCCCCCCC--CeeEEEEecC------------Cc
Confidence            532222111000               0111111 1125678887788888766  7799999973            23


Q ss_pred             hhhccceeeeCceeEEcCC-C-----cEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCCCCCceeEEE
Q 008535          427 EAFRNGWYHTGDLAVRNPD-G-----YVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAF  500 (562)
Q Consensus       427 ~~~~~g~~~TGD~~~~~~~-g-----~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~  500 (562)
                      ..|..+||+|||+++++++ |     .+++.||.+|+|+++|.+|+|.+||.+|.++|+|...+.+........+.+++.
T Consensus       284 ~~~p~~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~~G~~v~p~eie~~l~~~~~v~~~~q~~~~~~~~~~~~~~~  363 (422)
T TIGR02155       284 EALPVIRYRTRDLTRLLPGTARTMRRMDRITGRSDDMLIIRGVNVFPTQLEEVILKMDELSPHYQLELTRNGHMDELTLK  363 (422)
T ss_pred             cccceeeEEcCcEEEEECCCCCcccccccccCccCCeEEECCEEECHHHHHHHHHhCcCcCCCEEEEEEcCCCccEEEEE
Confidence            3455779999999999875 4     468999999999999999999999999999999984444444444445567777


Q ss_pred             EEeCCCCCC-C--------HHHHHHHHhccCCCCCCCcEEEee---cccCCCCCcchHH
Q 008535          501 VKLKEGREA-S--------PEELVTFCGDELPSCMVPRAIFFE---DIPVNSTGKVQKF  547 (562)
Q Consensus       501 v~~~~~~~~-~--------~~~l~~~~~~~l~~~~~p~~i~~~---~lP~t~~GKv~r~  547 (562)
                      |+..++... .        .++|++.+++.+..+.   .|.++   +||+|+ ||++|.
T Consensus       364 v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~v~~~~~~~lp~~~-GK~~~~  418 (422)
T TIGR02155       364 VELKPESYTLRLHEQASLLAGEIQHTIKQEVGVSM---DVHLVEPGSLPRSE-GKARRV  418 (422)
T ss_pred             EEEecCcccccchHHHHHHHHHHHHHHHhccCcEE---EEEEECCCCccCCC-CCceEE
Confidence            776543211 1        3567788877776653   24443   599988 999874

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=100.00  E-value=1.8e-33  Score=284.75  Aligned_cols=510  Identities=16%  Similarity=0.179  Sum_probs=352.4

Q ss_pred             CChHHHHHHHHHHcCCceEEEECC------eeccHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCcHHHHHHHHHhhh
Q 008535           20 LTPIDFLERAAHVYGDATSIIYGT------VRFSWRQTHQICLKLASALAQL-KISRGDIVAAMAPNIPALYKLHFAVPM   92 (562)
Q Consensus        20 ~ti~~~l~~~a~~~p~~~a~~~~~------~~~Ty~el~~~~~~~a~~L~~~-gv~~gd~V~i~~~~~~~~~~~~lA~~~   92 (562)
                      .+|.++|+++++..|+.+|+..-+      .++||++|..+|++++..|... -+++||.|+++++++.|++++++||+.
T Consensus       770 ~~ile~Lq~R~a~tp~~~a~~~~n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~Cly  849 (1363)
T KOG3628|consen  770 LTILEILQWRAAKTPDHIAFTTLNARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYACLY  849 (1363)
T ss_pred             HHHHHHHHHHhhcCCCceEEEEeccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHHHHh
Confidence            789999999999999999998743      5799999999999999999974 589999999999999999999999999


Q ss_pred             ccceEEecCCCC------CHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccc
Q 008535           93 AGAVLSALNTRL------DSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSV  166 (562)
Q Consensus        93 ~G~~~v~l~~~~------~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (562)
                      +|.+++|++|..      ..+.+..+++.+++.+|+++......+..-.....  ......+.++..++-.         
T Consensus       850 ~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~--~~~s~~p~i~~~~~~~---------  918 (1363)
T KOG3628|consen  850 LGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAH--VDQSAIPLILVLPKLP---------  918 (1363)
T ss_pred             cCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHH--hhhhcchhhhcccccc---------
Confidence            999999998743      34678899999999999999887665543221110  0001123333332211         


Q ss_pred             cCCCCCCCCchhhhhhcccCcc--ccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeee
Q 008535          167 ANNFPSGSLDYNDLLEMGKADF--EMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWT  244 (562)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~  244 (562)
                              .++....+.-....  ..+....++.+|++-+.--++|.--++.++|.++++.+........+.+..-++.+
T Consensus       919 --------~t~~k~~~~~~k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l~~~rpl~~~  990 (1363)
T KOG3628|consen  919 --------ETIRKRKKNIKKLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQLYKSRPLLGC  990 (1363)
T ss_pred             --------hhhhhhhhhhhccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHccccCCceEEE
Confidence                    01111111111111  11122456799999999999999999999999999999999999998888888888


Q ss_pred             cccccchhhH-HHHHhHhhceEEEEecc----CCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccce------
Q 008535          245 LDMFRCNGWC-CTWAMAAVGGINVCIRT----VSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRK------  313 (562)
Q Consensus       245 ~pl~~~~gl~-~~~~~~~~g~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l------  313 (562)
                      .+.+...|+. +.+...+.|...+++++    .+|.-++..++++++.-++.+-..++.+.+........++..      
T Consensus       991 ~~~~sGlgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~~gnn~s~ 1070 (1363)
T KOG3628|consen  991 SSPYSGLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLSKRGNNTSS 1070 (1363)
T ss_pred             ecCccchhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhhhhhccccc
Confidence            8887777766 46666777877777654    478899999999999999998888888877654443333321      


Q ss_pred             EEEEEeCCCChHHHHHHHHh----cCCe---eeccccCccccCcccccccCCCC-----CCCcCCccc----------cc
Q 008535          314 VIIVIAGVLPTIEVLEQVAN----FGFN---IRHAYGMTEVLGPAIVRQWKPEG-----ESSALDHEH----------EM  371 (562)
Q Consensus       314 ~~i~~~g~~l~~~~~~~~~~----~~~~---l~~~YG~tE~~~~~~~~~~~~~~-----~~~~~~~~~----------~~  371 (562)
                      ..++..-++......+-|.+    .|+.   +.-.|++.=--.++.....+++-     +...+.++.          ..
T Consensus      1071 s~vv~~~~RPr~ali~sf~klfa~igLsp~avStsys~r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l 1150 (1363)
T KOG3628|consen 1071 SIVVPAEERPRIALIASFKKLFAAIGLSPRAVSTSYSSRVNPFICLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHSL 1150 (1363)
T ss_pred             ceeeecCCccHHHHHHHHHHHHHHcCCChhhhcccccccCChHhhhccccCCCCcceeechhhhhccceeeeecCCCCcc
Confidence            34444566666665555543    3432   44445544333333322111110     100100100          00


Q ss_pred             cccccCccccccccceecccCCcccccCCCCceeEEEEcchhhhhhhcCCchh-hHhhh----------ccceeeeCcee
Q 008535          372 TKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKA-TEEAF----------RNGWYHTGDLA  440 (562)
Q Consensus       372 ~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~-~~~~~----------~~g~~~TGD~~  440 (562)
                      .-...|...+.. ++.|+.+++..+  +.+++.||||+.|.+.+.+|++..+. ....|          ..+|.||||+|
T Consensus      1151 ~L~dSG~~~~~~-~i~IvnPEtk~p--c~dge~GEIW~~S~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LG 1227 (1363)
T KOG3628|consen 1151 LLYDSGKLPVYT-DIAIVNPETKGP--CRDGELGEIWVNSAHNASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLG 1227 (1363)
T ss_pred             ccccCCcccccc-eeEEeCCccccc--cccCCcceEEeccccccccccccCchhhhhhhhhhccccccccccceeeeeee
Confidence            011123333333 556666655554  45558999999999999988875322 12223          23599999999


Q ss_pred             EEcC------C----CcEEEeccccceeecCCeEechHHHHHHHhc-CCCceeEEEEeeeCCCCCceeEEEEEeCCCCCC
Q 008535          441 VRNP------D----GYVQMKDRRKDIIISGAEIISSLEVEAVLLS-NPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREA  509 (562)
Q Consensus       441 ~~~~------~----g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~-~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~  509 (562)
                      ++..      +    ..+|++|-.++.+.++|.+++|.+||..+.+ |+.|.+|+|+..     +..+|+++++..  +.
T Consensus      1228 Fl~~t~~t~~~~e~~~~LyVlG~i~EtlEl~GL~h~p~DIE~TV~~vH~~I~~cavF~~-----~glvVvviE~~g--q~ 1300 (1363)
T KOG3628|consen 1228 FLRRTSLTDANVERHDLLYVLGAIDETLELNGLRHFPSDIETTVERVHPSIGGCAVFQA-----TGLVVVVIECHG--QQ 1300 (1363)
T ss_pred             eeeeeecccccceeeeeEEEeecccceeeecCcccCcchHHHHHHHhcccccceeeEee-----CCeEEEEEEecC--ch
Confidence            9942      2    3589999999999999999999999999875 799999999964     445777777665  23


Q ss_pred             CHHHHHHHH-hccCCCCCCC-cEEEeec---ccCCCCCcchHHHHhhhhhhhcc
Q 008535          510 SPEELVTFC-GDELPSCMVP-RAIFFED---IPVNSTGKVQKFVLRGKVNATAV  558 (562)
Q Consensus       510 ~~~~l~~~~-~~~l~~~~~p-~~i~~~~---lP~t~~GKv~r~~l~~~~~~~~~  558 (562)
                      ...+|.-.+ ...|..|.+. +.+.|++   +|+++.|..+|..+++.+.++..
T Consensus      1301 ~~~~LvPlIv~~vL~eH~iI~dvV~fV~~G~~p~~~~gEK~R~~I~~~w~~~kL 1354 (1363)
T KOG3628|consen 1301 ELADLVPLIVNVVLEEHYIILDVVAFVDKGVFPRNSRGEKQRAHILDSWLAGKL 1354 (1363)
T ss_pred             hHhhhhHHHHHHHHhhcceEEEEEEEecCCccccCCchhhHHHHHHHHHHhccc
Confidence            333444333 3445666655 5556776   99999999999999998877653

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.98  E-value=3.3e-31  Score=277.48  Aligned_cols=498  Identities=18%  Similarity=0.157  Sum_probs=324.1

Q ss_pred             ChHHHHHHHHHHcCCceEEEEC--------CeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhh
Q 008535           21 TPIDFLERAAHVYGDATSIIYG--------TVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPM   92 (562)
Q Consensus        21 ti~~~l~~~a~~~p~~~a~~~~--------~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~   92 (562)
                      ++...+.+.+...|+..+..+-        -.+.||++....++.+++.|...|..+|+.|++++..+.++++..++.++
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~~~~~  116 (1032)
T KOG1178|consen   37 TLEDSFRRELAEAPENTGHVIIPTASESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVFAVLA  116 (1032)
T ss_pred             chhhHHHHHHhhcccCCCceEeecccccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeeeehhh
Confidence            6677888888899998776552        15799999999999999999999999999999999999999999999999


Q ss_pred             ccceEEecCCCCC----HHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccC
Q 008535           93 AGAVLSALNTRLD----SATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVAN  168 (562)
Q Consensus        93 ~G~~~v~l~~~~~----~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (562)
                      +|..+++++|.++    ++.+..+.......    ..+...++.-....+..      ......+....           
T Consensus       117 ~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~----~~~i~~~l~i~~~~~~~------~~~~~sv~~~~-----------  175 (1032)
T KOG1178|consen  117 AGLTFLPIDPSWPNSELAGYLMRIAHFLTSV----ELEIVRRLNIIDILLNS------LFPKLSVETIA-----------  175 (1032)
T ss_pred             cceEEEEecCCCcccccchHHHhhhhhheec----cceehhhhhhHHHHhhc------cccccchhhcc-----------
Confidence            9999999999999    33222221111100    00111111100000000      00000000000           


Q ss_pred             CCCCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeeccc-
Q 008535          169 NFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDM-  247 (562)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl-  247 (562)
                            -.+..+....  ........-++..+++.||||+||.||+|..+|..+.....+....+.+...+.+-..... 
T Consensus       176 ------~~f~~~~~~~--~~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~~t~s~~~~~~~~~~  247 (1032)
T KOG1178|consen  176 ------DSFQMVLHNE--DTREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTFPPTGSDRFTFKTSVY  247 (1032)
T ss_pred             ------chhhhhhccC--CCcceeeecccccceEeecccccccccccchhHHHHHhhhhhccccCCcCccchhhhhheee
Confidence                  0011111000  0011111335568899999999999999999999999988888888888888776222333 


Q ss_pred             ccchhhHHHHHhHhhceEEEEecc---CCHHHHHHHHHhcCeEEEEcchHHHHHHHhcccc-------------cccccc
Q 008535          248 FRCNGWCCTWAMAAVGGINVCIRT---VSAKIIFDSILIHKVTHLCGQPRILNMIANASAS-------------DQNQLQ  311 (562)
Q Consensus       248 ~~~~gl~~~~~~~~~g~~~v~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~-------------~~~~l~  311 (562)
                      ++..-.......+..|..+.++..   ..+.++.+.+.+++++..+.+|++.+.++.....             .....+
T Consensus       248 ~~d~i~~~~~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~~~~~~~dl~~~~~  327 (1032)
T KOG1178|consen  248 FDDTIQKFIGALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLPLLEHAFSLSDLLTKRS  327 (1032)
T ss_pred             cccchHHHHhhHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchhhhhhhhhcccccccch
Confidence            333333333344444554554432   3478999999999999999999998877665432             112344


Q ss_pred             ceEEEEEeCCCChHHHHHHHHh-c-CCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceec
Q 008535          312 RKVIIVIAGVLPTIEVLEQVAN-F-GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVK  389 (562)
Q Consensus       312 ~l~~i~~~g~~l~~~~~~~~~~-~-~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~  389 (562)
                      .++....+|++........+.. + -.-...-|+.++..+......+.+......-........... ..+... .+...
T Consensus       328 ~Lkl~~~~~ep~~v~l~~s~~~~~~~~~~~~~y~s~~~~~~~s~~~~~~s~~ll~~~~v~~~p~~~~-~~~~~~-~~~~~  405 (1032)
T KOG1178|consen  328 CLKLVVLGGEPLLVSLYTSTFDLLAEIFFGLPYLSTDPTGLVSYDDFSPSKVLLTNENVYSVPKFDS-IIGSLT-VLESL  405 (1032)
T ss_pred             hheeeeecCCccchhhhhhhhhcccceeeeecccCCCCccceeHHhhCcccceecceeEEeccchhh-ccCCCc-ceeee
Confidence            7999999999998888875542 2 111223388888877776654433222111000000000000 001111 11111


Q ss_pred             ccCCccccc--CCCCceeEEEEcchhhhhhhcCCchhhHhhh------ccceeeeCceeEEcCCCcEEEeccccceeecC
Q 008535          390 QQNTMKSVP--HDGKTLGEVMFRANTVMLGYFKNPKATEEAF------RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISG  461 (562)
Q Consensus       390 ~~~~~~~~~--~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~------~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~  461 (562)
                      .. .+.+..  .+.++.|+-+-.+..+..|| ..++.....+      .+.+|+|||.|+.-++|.+.+.||.|++||.+
T Consensus       406 ~~-~~~~~~~~v~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~d~~~~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~r  483 (1032)
T KOG1178|consen  406 YR-AGGEGEGGVGKGCLGAEQNLSSWVVDGY-STPENFLPNFLTVDGVKARIYRTGDNGRSLKNGGLEISGRADRQIKDR  483 (1032)
T ss_pred             ec-cCcccCCcccceeecccccccceeeccc-cchhhcCCcccccccchhhcccccccceeecCCCEEEEEeccceEEEc
Confidence            11 111111  11112233333334444452 2222222222      34589999999999999999999999999999


Q ss_pred             CeEechHHHHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCCCC-CHHHHHHHHhccCCCCCCCcEEEe-ecccCC
Q 008535          462 AEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREA-SPEELVTFCGDELPSCMVPRAIFF-EDIPVN  539 (562)
Q Consensus       462 G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~-~~~~l~~~~~~~l~~~~~p~~i~~-~~lP~t  539 (562)
                      |.++.+.+|+..+..+|.|.++++....+..-++.+++|++....... ...+++.++.+.++.|++|..++. .++|+|
T Consensus       484 G~Ri~L~ei~t~v~~~p~v~~~itl~~~~~~~~~~l~aFvv~~~~~~~~~~~~i~~~l~~~La~y~vPs~~V~l~~vPl~  563 (1032)
T KOG1178|consen  484 GVRIELGELNTVVEVHPDVKEAITLARENSTVGQTLLAFVVERGGSKSVLIRDIRNYLKKELASYMLPSLVVPLAKVPLN  563 (1032)
T ss_pred             cEEEehhhhchhhccCcchhhhheeeeeccccCceEEEEEeccCCCCchhHHHHHHhhcccccceecceEEEEhhhCCcC
Confidence            999999999999999999999999999999889999999998765433 357899999999999999987664 559999


Q ss_pred             CCCcchHHHHhh
Q 008535          540 STGKVQKFVLRG  551 (562)
Q Consensus       540 ~~GKv~r~~l~~  551 (562)
                      ++||||+++|.+
T Consensus       564 ~~GKvDkkaL~~  575 (1032)
T KOG1178|consen  564 PNGKVDKKALLE  575 (1032)
T ss_pred             CCCCcChhhhhh
Confidence            999999999998

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.97  E-value=8.2e-29  Score=250.68  Aligned_cols=321  Identities=15%  Similarity=0.066  Sum_probs=214.4

Q ss_pred             CCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhh---cCCCCCCeeeeecccccchhhHH-HHHhHhhceEEEEec
Q 008535          195 HECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISR---CDVRDMPVFLWTLDMFRCNGWCC-TWAMAAVGGINVCIR  270 (562)
Q Consensus       195 ~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~gl~~-~~~~~~~g~~~v~~~  270 (562)
                      ..++++.+++||||||.||++.+||.++..+.......   .++.++|+++...+..+..+... .+.+...|++++...
T Consensus        84 ~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~  163 (445)
T TIGR03335        84 DWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEG  163 (445)
T ss_pred             CHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCC
Confidence            34578899999999999999999999987665544433   48889999999988876655443 344556676655333


Q ss_pred             cCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccc--cccceEEEEEeCCCChHHHHHHHH-hcCCeeeccccCccc
Q 008535          271 TVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQN--QLQRKVIIVIAGVLPTIEVLEQVA-NFGFNIRHAYGMTEV  347 (562)
Q Consensus       271 ~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~--~l~~l~~i~~~g~~l~~~~~~~~~-~~~~~l~~~YG~tE~  347 (562)
                        .....++.+++++++.+.++|+.+..|+...+....  ...++|.+++|||+++++..+.++ .+|+++++.||+||+
T Consensus       164 --~~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~~~~lr~ii~gGE~l~~~~r~~ie~~~g~~v~~~YG~TE~  241 (445)
T TIGR03335       164 --KCTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPAESSIRRLVVGGESFADESRNYVEELWGCEVYNTYGSTEG  241 (445)
T ss_pred             --chhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCcceEEEEcCCCCCHHHHHHHHHHhCCcEEecCChhhh
Confidence              234668999999999999999998888765443322  246899999999999999998888 569999999999998


Q ss_pred             cCcccccccCCCCCCCcCCccccccccccCccc-cccccceecccCCcccccCCCCceeEEEEcchhhhhhhcCCchhhH
Q 008535          348 LGPAIVRQWKPEGESSALDHEHEMTKHREGLNN-LLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATE  426 (562)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~  426 (562)
                      + ++..+..   .               .|... .....++|+|++++.+++.|  +.|||++++......    ..   
T Consensus       242 ~-~~~~c~~---~---------------~g~h~~~d~~~vEIvDp~~~~~vp~G--e~GELvvT~L~~~~~----r~---  293 (445)
T TIGR03335       242 T-MCGECQA---V---------------AGLHVPEDLVHLDVYDPRHQRFLPDG--ECGRIVLTTLLKPGE----RC---  293 (445)
T ss_pred             h-heEEecC---C---------------CCccccCCceEEEEEcCCCCCCCcCC--CceEEEEEecCCCCc----cC---
Confidence            5 2222210   0               11111 11226889998777777766  779999987532100    00   


Q ss_pred             hhhccceeeeCceeEEc-CC----C----cEEEeccccceeecCCeEechHHHHHHHhcC---CCce-eEEEEeeeCCCC
Q 008535          427 EAFRNGWYHTGDLAVRN-PD----G----YVQMKDRRKDIIISGAEIISSLEVEAVLLSN---PKVL-EAAVVGKVDDQL  493 (562)
Q Consensus       427 ~~~~~g~~~TGD~~~~~-~~----g----~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~---~~v~-~~~v~~~~~~~~  493 (562)
                       .+.---|+|||++++. .+    |    ++...||.||+++++|.+++|.+||++|.++   +++. +..++...+...
T Consensus       294 -~~PliRYrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~~g~~~~p~~ie~~l~~~~~~~~~~~~~~~~~~~~~~~  372 (445)
T TIGR03335       294 -GSLLINYDTEDTTVVISRDRCPCGRTHMRILNPEREAETIWISGVPFNRVDVERAVFQRENMDSLTGEYEAFLYGEEEG  372 (445)
T ss_pred             -CceEEEeecCceEEEecCCCCCCCCCcceeCCCcccCceEEECCEEeCHHHHHHHHhccCCCCCCCccEEEEEecCCCC
Confidence             0000129999999973 23    2    1445699999999999999999999999994   5554 333332222222


Q ss_pred             CceeEEEEEeCCCCCCCHHHHHHHHhcc----CCC-------CCCCcEEEeec---ccCC-CCCcchH
Q 008535          494 KEVPVAFVKLKEGREASPEELVTFCGDE----LPS-------CMVPRAIFFED---IPVN-STGKVQK  546 (562)
Q Consensus       494 ~~~~v~~v~~~~~~~~~~~~l~~~~~~~----l~~-------~~~p~~i~~~~---lP~t-~~GKv~r  546 (562)
                      ...+.+.|+..+......+++.+.+.+.    ++.       ..+...+.+++   ||++ ..||..|
T Consensus       373 ~~~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~r  440 (445)
T TIGR03335       373 EITLRVSLECEDKDNCSIHDIQENFTGTFLKYKPELIGSYDEGIFQILVNFTGPGELELHKIKGRPKR  440 (445)
T ss_pred             CceEEEEEEecCcccchHHHHHHHHHHHHhhhhhhhhhhhhcceEEEEEEEeCCCCccccccCCCcee
Confidence            3355566666554333444544444443    222       11222333433   9998 4698776

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.96  E-value=9.2e-28  Score=229.47  Aligned_cols=319  Identities=17%  Similarity=0.169  Sum_probs=233.4

Q ss_pred             CCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhc---CCCCCCeeeeeccc-ccchhhHHHHHhHhhceEEEEec
Q 008535          195 HECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRC---DVRDMPVFLWTLDM-FRCNGWCCTWAMAAVGGINVCIR  270 (562)
Q Consensus       195 ~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~---~~~~~~~~l~~~pl-~~~~gl~~~~~~~~~g~~~v~~~  270 (562)
                      ..++...|..||||||+|+-+.+|+..+..++....+.+   +...+|++.++... .+..|+...+++--.|++++...
T Consensus        88 ~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~  167 (438)
T COG1541          88 PKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPIS  167 (438)
T ss_pred             cccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccC
Confidence            345677799999999999999999999877776666554   67888988777663 33344455556666777777776


Q ss_pred             cCCHHHHHHHHHhcCeEEEEcchHHHHHHHhcccccc--ccccceEEEEEeCCCChHHHHHHHH-hcCCeeeccccCccc
Q 008535          271 TVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQ--NQLQRKVIIVIAGVLPTIEVLEQVA-NFGFNIRHAYGMTEV  347 (562)
Q Consensus       271 ~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~--~~l~~l~~i~~~g~~l~~~~~~~~~-~~~~~l~~~YG~tE~  347 (562)
                      .-+-+..+.++..++++++.++|+.+..|++..+..+  ..-.++|.+++|+|+++++.++.++ .+|+..++.||+||.
T Consensus       168 ~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~~~~lk~~i~gaE~~see~R~~ie~~~g~~~~diYGltE~  247 (438)
T COG1541         168 GGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAEPWSEEMRKVIENRFGCKAFDIYGLTEG  247 (438)
T ss_pred             CccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChhhcceeEEEEecccCCHHHHHHHHHHhCCceeeccccccc
Confidence            6788899999999999999999999999999887664  4456899999999999999999999 679999999999999


Q ss_pred             cCcc-cccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhhhhhhcCCchhhH
Q 008535          348 LGPA-IVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATE  426 (562)
Q Consensus       348 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~  426 (562)
                      .++. ..|....   +..++              ....-++++|+++++.++.|  +.|||+++.-.       +     
T Consensus       248 ~g~g~~eC~~~~---glhi~--------------eD~~~~Ei~dP~t~e~l~dg--e~GelV~T~L~-------~-----  296 (438)
T COG1541         248 FGPGAGECTERN---GLHIW--------------EDHFIFEIVDPETGEQLPDG--ERGELVITTLT-------K-----  296 (438)
T ss_pred             cCCccccccccc---CCCcc--------------hhhceeeeecCCcCccCCCC--CeeEEEEEecc-------c-----
Confidence            7774 2222111   11111              12237899999999988887  67999998743       1     


Q ss_pred             hhhccceeeeCceeEEcCC----Cc-----EEEeccccceeecCCeEechHHHHHHHhcCCCce-eEEEEeeeCCCCCce
Q 008535          427 EAFRNGWYHTGDLAVRNPD----GY-----VQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVL-EAAVVGKVDDQLKEV  496 (562)
Q Consensus       427 ~~~~~g~~~TGD~~~~~~~----g~-----l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~-~~~v~~~~~~~~~~~  496 (562)
                      ..+.---|+|||+..+.++    |+     .++.||+||++++.|.+|+|..||++|.+++.+. +..++... ....+.
T Consensus       297 ~~~PlIRYrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~~G~~vfp~~ie~~l~~~~~~~~~yqi~~~~-~~~~d~  375 (438)
T COG1541         297 EGMPLIRYRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFPSQIERVLLQIPEVTPHYQIILTR-NGGLDE  375 (438)
T ss_pred             cCcceEEEEcCCeeEecccCCCCCCccccccccCcccccEEEECCEEeCHHHHHHHHhcccCCCceEEEEEec-CCCCce
Confidence            1111113999999999874    22     5799999999999999999999999999999999 66666665 555667


Q ss_pred             eEEEEEeCCCCCCCH--HHHHHHHhccCC-CCCCCcEEEeec---ccCCCCCcchH
Q 008535          497 PVAFVKLKEGREASP--EELVTFCGDELP-SCMVPRAIFFED---IPVNSTGKVQK  546 (562)
Q Consensus       497 ~v~~v~~~~~~~~~~--~~l~~~~~~~l~-~~~~p~~i~~~~---lP~t~~GKv~r  546 (562)
                      +.+.|++.+......  .++...+.+.+- ..-....|.++.   +||+.. |..|
T Consensus       376 L~V~vE~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~v~~g~l~r~~~-K~kr  430 (438)
T COG1541         376 LTVRVELENEAEELEDERRLAKKLIKNIKSELGVRVEVELVEPGELPRTEG-KAKR  430 (438)
T ss_pred             EEEEEEecCcccchHHHHHHHHHHHHHHHhhcCCceEEEEEeccceecccC-ceeE
Confidence            888888876422222  222233333322 222333344433   999964 6554

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=99.94  E-value=1.2e-25  Score=205.09  Aligned_cols=218  Identities=15%  Similarity=0.090  Sum_probs=162.8

Q ss_pred             HHHHHHHcCCceEEEEC------CeeccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEE
Q 008535           26 LERAAHVYGDATSIIYG------TVRFSWRQTHQICLKLASALAQ-LKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLS   98 (562)
Q Consensus        26 l~~~a~~~p~~~a~~~~------~~~~Ty~el~~~~~~~a~~L~~-~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v   98 (562)
                      |...++.+|+++|++..      +.++||+||.+++.++|+.|.+ .|+++||+|+++++|+++++++++||+++|++++
T Consensus         2 ~~~~~~~~p~~~al~~~~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~v~v   81 (227)
T TIGR03089         2 LSPLLAADPASPRLTFYDDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGVEVV   81 (227)
T ss_pred             hhhhhhhCCCCcEEEEEcCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEE
Confidence            56788899999999742      2369999999999999999998 7999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCchh
Q 008535           99 ALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYN  178 (562)
Q Consensus        99 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (562)
                      |++             .+++++++++.+..+.+..             ...++.+.........    ......+..++.
T Consensus        82 p~n-------------~s~a~~~v~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~  131 (227)
T TIGR03089        82 LAG-------------DPDADVVVTGPDRLAAAAG-------------SGEVVALSLDPLGRRV----AGELPPGVIDFA  131 (227)
T ss_pred             eCC-------------CCCCCEEEeCcchhhhccc-------------CCceEEEeccccccCC----CCCCCCcccchh
Confidence            995             6899999999876655321             1111222110000000    000012224555


Q ss_pred             hhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhH-HHH
Q 008535          179 DLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWC-CTW  257 (562)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~-~~~  257 (562)
                      +................++|++.++||||+         +|.+++.+.    ...++.++|+++ ..|++|.+|+. .++
T Consensus       132 ~~~~~~~~~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~~l~~~D~~l-~~Pl~H~~gl~~~~~  197 (227)
T TIGR03089       132 PEVRVHGDQFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAAGLPPGDRVL-VLAWTDLEDFLATLL  197 (227)
T ss_pred             hhhhccCCCCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhcCCCCCCeEE-ecCCCchHHHHHHHH
Confidence            544432222222213456899999999986         666665554    566788999999 99999999986 577


Q ss_pred             HhHhhceEEEEeccCCHHHHHHHHHhcCeE
Q 008535          258 AMAAVGGINVCIRTVSAKIIFDSILIHKVT  287 (562)
Q Consensus       258 ~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t  287 (562)
                      .++..|+++++.+++++..+++.|+++|+|
T Consensus       198 ~~l~~G~t~v~~~rFd~~~~l~~i~~~~vT  227 (227)
T TIGR03089       198 APLAAGGSLVLVTHPDPARLDQIAETERVT  227 (227)
T ss_pred             HHhccCceEEEecCCCHHHHHHHHHhhcCC
Confidence            888999999999999999999999999986

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.87  E-value=7.3e-22  Score=190.19  Aligned_cols=121  Identities=20%  Similarity=0.163  Sum_probs=109.9

Q ss_pred             hhccceeeeCceeEE-cCCCcEEEeccccceeecCC---eEechHHHHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEe
Q 008535          428 AFRNGWYHTGDLAVR-NPDGYVQMKDRRKDIIISGA---EIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKL  503 (562)
Q Consensus       428 ~~~~g~~~TGD~~~~-~~~g~l~~~GR~~d~i~~~G---~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~  503 (562)
                      .|.+|||+|||+|++ |++|++++.||.+     +|   ++|+|. ||++|.+||+|.+|+|++++++.+|+.++++|++
T Consensus       205 ~~~dgW~~TGDlg~~~d~dG~l~~~gR~~-----~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~  278 (365)
T PRK09188        205 LPSRIWLATGKKVYNFITRGLFSWSDGEG-----TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEA  278 (365)
T ss_pred             cccCcEEeCCCEEEEEcCCCeEEEEecCc-----CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEE
Confidence            346899999999998 7999999999998     78   799999 9999999999999999999999999999999997


Q ss_pred             CCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhhc
Q 008535          504 KEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNATA  557 (562)
Q Consensus       504 ~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~~  557 (562)
                      ..  ..+.++++++++++++. ++|+.+.+++ ||+|++||++|++|+.++.+..
T Consensus       279 ~~--~~~~~el~~~l~~~L~~-kvP~~v~~v~~lP~t~~GKi~R~~Lr~~~~~~~  330 (365)
T PRK09188        279 EL--PADEKSLRARLAGAKPP-KPPEHIQPVAALPRDADGTVRDDILRLIAMNQI  330 (365)
T ss_pred             CC--CCCHHHHHHHHHhhchh-cCCcEEEEECCCCCCCCCCccHHHHHHHhhccc
Confidence            63  45778999999999999 9999988665 9999999999999999875543

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.86  E-value=1.7e-20  Score=191.38  Aligned_cols=501  Identities=16%  Similarity=0.085  Sum_probs=323.6

Q ss_pred             ChHHHHHHHHHHcCCceEEEECC-----eeccHHHHHHHHHHHHH-HHHHcCCCCCCEEEEEcCCc--HHHHHHHHHhhh
Q 008535           21 TPIDFLERAAHVYGDATSIIYGT-----VRFSWRQTHQICLKLAS-ALAQLKISRGDIVAAMAPNI--PALYKLHFAVPM   92 (562)
Q Consensus        21 ti~~~l~~~a~~~p~~~a~~~~~-----~~~Ty~el~~~~~~~a~-~L~~~gv~~gd~V~i~~~~~--~~~~~~~lA~~~   92 (562)
                      .+...++.+-.+++...|.+.-+     ..+||..+..++.++|+ .|.+-|++++|+|.+++..+  .++++..++|..
T Consensus        95 d~~avl~~~~nhs~~~ta~i~id~kgk~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~isl~gc~l  174 (1363)
T KOG3628|consen   95 DIIAVLRYRRNHSATSTAHICIDKKGKATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLISLFGCFL  174 (1363)
T ss_pred             chHHHHHhhccCCCCCceEEEEcCCCceeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhhhhccccc
Confidence            56777777778888888777633     57999999999999999 78889999999999999887  799999999999


Q ss_pred             ccceEEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCC
Q 008535           93 AGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPS  172 (562)
Q Consensus        93 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (562)
                      .|.+.+|+.+..+.+++..+++....+++++.................      ...+...                   
T Consensus       175 ~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~s~------~k~v~~w-------------------  229 (1363)
T KOG3628|consen  175 LGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPVSL------AKAVAWW-------------------  229 (1363)
T ss_pred             cceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCcccH------HHHHHhh-------------------
Confidence            999999999999999999999999999999987766554432200000      0000000                   


Q ss_pred             CCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhh--------------------
Q 008535          173 GSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISR--------------------  232 (562)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~--------------------  232 (562)
                      +..++.....   .+....++..- ...+|-||++++|.--|++.+|. ++.+.+.+...                    
T Consensus       230 ~t~~~k~~~~---~~k~~~P~~~~-~~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v  304 (1363)
T KOG3628|consen  230 KTNDFKGNYT---KDKIKKPRMQL-PYGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHV  304 (1363)
T ss_pred             hcccccceee---hhhccCCceee-eeEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhc
Confidence            0000000000   00000011112 27899999999999999999998 44443332221                    


Q ss_pred             cCCCCCCeeeeecccccchhhHH-HHHhHhhceEEEEecc---CCHHHHHHHHHhcCeEEEEcchHHHHHHHhcc-----
Q 008535          233 CDVRDMPVFLWTLDMFRCNGWCC-TWAMAAVGGINVCIRT---VSAKIIFDSILIHKVTHLCGQPRILNMIANAS-----  303 (562)
Q Consensus       233 ~~~~~~~~~l~~~pl~~~~gl~~-~~~~~~~g~~~v~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~-----  303 (562)
                      +.....+.++.........|+.. .+.+++.|.|.+.+++   ..|..+.+++-++|.+++..--..++......     
T Consensus       305 ~~~~~~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~p~  384 (1363)
T KOG3628|consen  305 FPVPSEDVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQEDPK  384 (1363)
T ss_pred             cccCcccceeeccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCCcc
Confidence            12233445555555555556554 6677888999888886   68889999999999999987655554443221     


Q ss_pred             ------ccccccccceEEEEEeCCCChHHHHHHHHhc-----CC---ee---------------eccccCccccCccccc
Q 008535          304 ------ASDQNQLQRKVIIVIAGVLPTIEVLEQVANF-----GF---NI---------------RHAYGMTEVLGPAIVR  354 (562)
Q Consensus       304 ------~~~~~~l~~l~~i~~~g~~l~~~~~~~~~~~-----~~---~l---------------~~~YG~tE~~~~~~~~  354 (562)
                            +....++++++.+++....++.+..+...+.     |.   ++               +..=+.+|.+......
T Consensus       385 a~~s~~k~~t~d~sslk~C~Vtc~~vd~~~~~ivs~~wlk~lg~~~~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~  464 (1363)
T KOG3628|consen  385 ATLSFKKYKTPDLSSLKGCMVTCTAVDTEFQEIVSDRWLKPLGETNVKVVDFPILCLLWHGGIPISFKDWMEIGTVSIRR  464 (1363)
T ss_pred             cccchhhccCCCccceeeeEEeeeecchHHHHHHHHhhcccccCcCcceeechhhhhhhcCceEEEeccchhhhcccccC
Confidence                  1123568899999999999998877655432     21   11               1112224443333222


Q ss_pred             ccC----CCCCCCc-----------C---CccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhhhh
Q 008535          355 QWK----PEGESSA-----------L---DHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVML  416 (562)
Q Consensus       355 ~~~----~~~~~~~-----------~---~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~  416 (562)
                      ...    ...+...           +   +.........++...++-..+.++++++...|..+  ++|||||.++.+.+
T Consensus       465 p~~~~~~~~~e~ll~~~~L~~~~V~v~~e~~is~~s~kd~~~i~~g~~t~~vv~~~t~~LC~~~--eVGEIwVsS~~~~~  542 (1363)
T KOG3628|consen  465 PEQMADTLPGEGLLSKEALKLNEVEVDTEDDISSLSVKDVLCIMPGDATLAVVNPDTNQLCKTD--EVGEIWVSSNSLGK  542 (1363)
T ss_pred             cccccccCccceeeeccccccceEEEcchhhhhhcCccccceecccceEEEEeCCCcccccccC--cceeEEEecCCccc
Confidence            220    0000000           0   00011222344444444446667777666666666  89999999999999


Q ss_pred             hhcCCchhhHhhhc-------------cceeeeCceeEEcCCCcEEEeccccceee-cCCeEechHHHH----------H
Q 008535          417 GYFKNPKATEEAFR-------------NGWYHTGDLAVRNPDGYVQMKDRRKDIII-SGAEIISSLEVE----------A  472 (562)
Q Consensus       417 gy~~~~~~~~~~~~-------------~g~~~TGD~~~~~~~g~l~~~GR~~d~i~-~~G~~v~~~~iE----------~  472 (562)
                      +||.-+..++..|.             .-|.|||-+|++. .|.+|++|-.+|++. +.|...+..+|-          .
T Consensus       543 ~~~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGFv~-~gki~vl~~k~d~llq~~~~~h~~d~iv~thya~~~ikt  621 (1363)
T KOG3628|consen  543 LFYALDKQTENTFKATPVESSGKPPSNVPFMRTGLLGFVH-NGKIYVLGLKEDGLLQVSGWRHNADDIVATHYAVELIKT  621 (1363)
T ss_pred             ceeeccccccceEEeeeccccCCCCccchhhhhcceeeee-CCeEEEEEechhhhhhhhhhhhhhhhhHhhHHHHHHHHH
Confidence            99998888887771             2389999999998 566777777777766 888887765543          4


Q ss_pred             HHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCC-CCCHHHHHHHHhccCCC-CCCCcEE-Eeec---ccCCCCCcchH
Q 008535          473 VLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGR-EASPEELVTFCGDELPS-CMVPRAI-FFED---IPVNSTGKVQK  546 (562)
Q Consensus       473 ~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~-~~~~~~l~~~~~~~l~~-~~~p~~i-~~~~---lP~t~~GKv~r  546 (562)
                      +.+..+.|.++.++-      +++++++++..+.. +.+.-+....+-+.+-. +++-... -+++   ||||+-|-+.-
T Consensus       622 V~R~v~~VF~~saf~------~E~~~Vv~~esP~a~e~~~~q~~~~v~q~l~~iHqv~vyCilivP~~tLPrt~~~Gi~~  695 (1363)
T KOG3628|consen  622 VMRGVIAVFDVSAFE------DEHIVVVVLESPDATEENSFQWMSRVFQALDSIHQVGVYCILIVPANTLPRTPLGGIHN  695 (1363)
T ss_pred             HHhccceEEEEeeee------cceEEEEEEeCcchhhhhhhhHHHHHHHHHHHHhcccceEEEEeccccCCCcccccccc
Confidence            445567888888884      44555555544442 11222333333332322 3332222 2444   99999999999


Q ss_pred             HHHhhhhhhhcccc
Q 008535          547 FVLRGKVNATAVGW  560 (562)
Q Consensus       547 ~~l~~~~~~~~~~~  560 (562)
                      .+++++|.+...+.
T Consensus       696 ~~~k~~F~~G~L~~  709 (1363)
T KOG3628|consen  696 NECKQAFLEGSLPP  709 (1363)
T ss_pred             HHHHHHHHcCCCCc
Confidence            99999999877554

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=99.76  E-value=1.4e-16  Score=157.45  Aligned_cols=255  Identities=14%  Similarity=0.100  Sum_probs=159.3

Q ss_pred             CceEEEeccCCCCCCCceEeechhHHHHHHHHHhh---cCCCCCCeeeeecccccchhhHHHHHhHhhceE-EEEec-cC
Q 008535          198 DPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISR---CDVRDMPVFLWTLDMFRCNGWCCTWAMAAVGGI-NVCIR-TV  272 (562)
Q Consensus       198 ~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~gl~~~~~~~~~g~~-~v~~~-~~  272 (562)
                      ....+..||||||+|-.+..+......+.......   .++..++++.....-   .+  .++..+..... +-..+ ..
T Consensus       100 ~~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~~---~~--~ly~~~~~~~~~~~~~~l~~  174 (430)
T TIGR02304       100 GNISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLRA---DN--NLYQSVNNRWISLDFFDLLA  174 (430)
T ss_pred             CcEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEcc---Ch--hHHHHHHhccceeeecCCCc
Confidence            34567889999999999999998754433322222   134444444333210   00  11111111111 11111 25


Q ss_pred             CHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHH-hcCCeeeccccCccccCcc
Q 008535          273 SAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVA-NFGFNIRHAYGMTEVLGPA  351 (562)
Q Consensus       273 ~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~-~~~~~l~~~YG~tE~~~~~  351 (562)
                      +.+.+++.|.+++|+++.++|+.+..|++..+..... ..++.++++||.++++..+.++ .+|+++++.||+|| |.++
T Consensus       175 ~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~-~~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tE-g~la  252 (430)
T TIGR02304       175 PFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELT-IKPKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATE-GFLA  252 (430)
T ss_pred             CHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCC-CCceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCch-hheE
Confidence            6788999999999999999999999999876554433 4789999999999999999988 67999999999999 5554


Q ss_pred             cccccCCCCCCCcCCccccccccccCccccccccce--ecccCCcccccCCCCceeEEEEcchhhhhhhcCCchhhHhhh
Q 008535          352 IVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVD--VKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAF  429 (562)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~  429 (562)
                      ..|..+.    ..+              ......++  ++|++ +         .+..+|++-.      +....     
T Consensus       253 ~eC~~g~----lHl--------------~ed~~~vE~~ivD~~-~---------~~~~ViT~L~------n~~~P-----  293 (430)
T TIGR02304       253 STCRCGT----LHL--------------NEDLVHIEKQYLDEH-K---------RFVPIITDFT------RTTQP-----  293 (430)
T ss_pred             EecCCCC----EEE--------------ccccEEEEeeEECCC-C---------ceEEEEecCC------Cccce-----
Confidence            4442211    000              00111233  45542 1         1444665522      11111     


Q ss_pred             ccceeeeCceeEEcCC----Cc----E-EEeccccceeec---CCe--EechHHHHHHHh-cCCCceeEEEEeeeCCCCC
Q 008535          430 RNGWYHTGDLAVRNPD----GY----V-QMKDRRKDIIIS---GAE--IISSLEVEAVLL-SNPKVLEAAVVGKVDDQLK  494 (562)
Q Consensus       430 ~~g~~~TGD~~~~~~~----g~----l-~~~GR~~d~i~~---~G~--~v~~~~iE~~l~-~~~~v~~~~v~~~~~~~~~  494 (562)
                       =--|+|||++.+.++    |.    + .+.||.+|+++.   +|.  .++|..++.++. ..++|.+..++...    .
T Consensus       294 -lIRYrtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~~yQi~Q~~----~  368 (430)
T TIGR02304       294 -IVRYRLNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQTVFPDFIRRVILFTLPLIVEYRVLQTG----S  368 (430)
T ss_pred             -EEeeeCCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCeEEeCHHHHHHHHHhcCCCCceEEEEEcc----C
Confidence             112999999988654    22    3 488999999984   454  459999998855 57899999887632    2


Q ss_pred             ceeEEEEEe
Q 008535          495 EVPVAFVKL  503 (562)
Q Consensus       495 ~~~v~~v~~  503 (562)
                      +.+.+.++.
T Consensus       369 ~~l~v~~~~  377 (430)
T TIGR02304       369 AQLELIADC  377 (430)
T ss_pred             CeEEEEEEe
Confidence            334555554

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B

Probab=99.28  E-value=8.3e-12  Score=91.70  Aligned_cols=69  Identities=46%  Similarity=0.678  Sum_probs=60.3

Q ss_pred             HHHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEE---eec-ccCCCCCc
Q 008535          469 EVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIF---FED-IPVNSTGK  543 (562)
Q Consensus       469 ~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~---~~~-lP~t~~GK  543 (562)
                      |||++|.++|+|.+|+|++.+++.+|+.+++++++      +.++++++++++++.|++|+.+.   +.+ ||+|+|||
T Consensus         1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~------~~~~i~~~~~~~l~~~~~P~~~~~v~~~~~lP~t~~GK   73 (73)
T PF13193_consen    1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL------DEEEIRDHLRDKLPPYMVPRRIRFVRLDEELPRTPSGK   73 (73)
T ss_dssp             HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE------HHHHHHHHHHHHS-GGGS-SEEEEEEESSSEEBETTSS
T ss_pred             CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe------eecccccchhhhCCCcceeeEEEEccccCcCCCCCCCC
Confidence            79999999999999999999999999999999997      44899999999999999995443   346 99999998

...

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=98.92  E-value=9.4e-08  Score=92.85  Aligned_cols=224  Identities=18%  Similarity=0.203  Sum_probs=131.3

Q ss_pred             CCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhh---cC-CCCCC-eeeeecccccch-hhHH----HHHhHhhceE
Q 008535          196 ECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISR---CD-VRDMP-VFLWTLDMFRCN-GWCC----TWAMAAVGGI  265 (562)
Q Consensus       196 ~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~---~~-~~~~~-~~l~~~pl~~~~-gl~~----~~~~~~~g~~  265 (562)
                      ++++..++.||||||+|--+.+.+..+..+.......   +. ..... .++...|-.... .+..    .......+..
T Consensus        88 ~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~~  167 (365)
T PF04443_consen   88 EEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGSR  167 (365)
T ss_pred             hhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCce
Confidence            4567789999999999866666665555444333322   22 22111 233333432211 1111    1111222222


Q ss_pred             EEEec--cCCHHHHHHHHH----hcCeEEEEcchHHHHHHHhcccccccc--cc-ceEEEEEeC------CCCh-HHHHH
Q 008535          266 NVCIR--TVSAKIIFDSIL----IHKVTHLCGQPRILNMIANASASDQNQ--LQ-RKVIIVIAG------VLPT-IEVLE  329 (562)
Q Consensus       266 ~v~~~--~~~~~~~~~~i~----~~~~t~l~~~p~~~~~l~~~~~~~~~~--l~-~l~~i~~~g------~~l~-~~~~~  329 (562)
                       ..+.  .++.+.+...+.    +.++..++++|.++-.++...+.....  ++ ..+.+-.||      +.++ +++.+
T Consensus       168 -~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~L~~~s~vi~~GGwK~~~~e~v~r~ef~~  246 (365)
T PF04443_consen  168 -FALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFRLPKGSIVIHGGGWKGRRKEAVSREEFYA  246 (365)
T ss_pred             -eeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcccCCCCCEEEeCCCCCccccCccCHHHHHH
Confidence             3333  356776666654    457899999999887776655444333  33 345555666      3454 56666


Q ss_pred             HHH-hcCC----eeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCce
Q 008535          330 QVA-NFGF----NIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTL  404 (562)
Q Consensus       330 ~~~-~~~~----~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~  404 (562)
                      .++ .+|+    ++++.||+||.....+.+....                   ...+++  +.++|+++..+++.|  +.
T Consensus       247 ~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~~~-------------------~~~p~w--V~iRDp~tl~~~~~G--e~  303 (365)
T PF04443_consen  247 RLQEVFGVIPIENIYDMYGMTELNSQAYECGHGH-------------------FHVPPW--VIIRDPETLEPLPPG--ET  303 (365)
T ss_pred             HHHHHHCCCCHHHeeeeeeccccchhheeCCCCc-------------------ccCCCe--EEEECCCCCcCCCCC--Ce
Confidence            676 4787    6999999999765444331110                   122333  667788888877776  67


Q ss_pred             eEEEEcchhhhhhhcCCchhhHhhhccceeeeCceeEEcCC--------CcEEEeccccc
Q 008535          405 GEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPD--------GYVQMKDRRKD  456 (562)
Q Consensus       405 Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~--------g~l~~~GR~~d  456 (562)
                      |-|.+-++... .|            .+..-|.|+|.+..+        ..+.++||.+.
T Consensus       304 Gli~vidl~~~-s~------------p~~IlTeDlGvl~~~~~c~cr~g~~f~vlGR~~~  350 (365)
T PF04443_consen  304 GLIQVIDLANT-SY------------PGFILTEDLGVLHGDDDCGCRKGKYFEVLGRADG  350 (365)
T ss_pred             eEEEEEccccc-CC------------CcEEEEcceeeecCCCCCCCccCCEEEEEeCCCC
Confidence            99988766432 11            234779999988654        26899999874

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=98.54  E-value=1.1e-06  Score=90.59  Aligned_cols=103  Identities=18%  Similarity=0.226  Sum_probs=67.6

Q ss_pred             ceeEEEEcchhhhhhhcCCchhhHhhhccceeeeCceeEEcC--CC--cEEEeccccceeecCCeEechHHHHHHHhcC-
Q 008535          403 TLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNP--DG--YVQMKDRRKDIIISGAEIISSLEVEAVLLSN-  477 (562)
Q Consensus       403 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~--~g--~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~-  477 (562)
                      +.-||+|+..   .|.|+             |+.||+.++..  ++  .+.|+||.+.++.+.|++++-.+|++++.+. 
T Consensus       356 ~~YelviTt~---~GLyR-------------Y~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l~gEkl~e~~v~~av~~~~  419 (528)
T PF03321_consen  356 EEYELVITTN---SGLYR-------------YRIGDVVRVTGFYNQTPRIEFVGRRGQVLSLFGEKLSEEQVQEAVARAL  419 (528)
T ss_dssp             -EEEEEEEST---TS-SS-------------EEECEEEEEEEEETTEEEEEEEEETTEEE-SSS--EEHHHHHHHHHHHH
T ss_pred             CeEEEEEecc---cceee-------------eecCCEEEEeeccCCCcEEEEeccCCceeecceeecCHHHHHHHHHHHH
Confidence            5588999864   34554             99999999942  23  7999999999999999999999999999875 


Q ss_pred             ----CCceeEEEEeeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccC
Q 008535          478 ----PKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDEL  522 (562)
Q Consensus       478 ----~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l  522 (562)
                          -.+.+..+...........-+.++++... ..+.+++.+.+.+.|
T Consensus       420 ~~~~~~~~~f~~~~~~~~~~~~~Y~~~~e~~~~-~~~~~~~~~~lD~~L  467 (528)
T PF03321_consen  420 QETGLELRDFTVAPDPSSGNPPHYVLFWELEGE-PDDLEELAKALDESL  467 (528)
T ss_dssp             HCTT-EEEEEEEEEE--SSSSBEEEEEEEECS--HHHHHHHHHHHHHCS
T ss_pred             HhcCCceeeEEEEeecccCCCCceEEEEEeCCC-chHHHHHHHHHHHHh
Confidence                44667777765322333455666666544 223456666665555

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>PLN02249 indole-3-acetic acid-amido synthetase

Probab=97.98  E-value=0.001  Score=69.08  Aligned_cols=58  Identities=10%  Similarity=0.230  Sum_probs=47.2

Q ss_pred             ceeEEEEcchhhhhhhcCCchhhHhhhccceeeeCceeEEcC----CCcEEEeccccceeecCCeEechHHHHHHHhc
Q 008535          403 TLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNP----DGYVQMKDRRKDIIISGAEIISSLEVEAVLLS  476 (562)
Q Consensus       403 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~----~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~  476 (562)
                      +.-+|+|+..   .|.|+             |+.||+.++..    -..+.|+||.+.++.+.|+++.-.+++.++.+
T Consensus       395 ~~Y~lVvTT~---~GLyR-------------Y~iGDvVrvtgf~~~~P~i~F~gR~~~~ls~~GEKl~e~~v~~Av~~  456 (597)
T PLN02249        395 KEYELVITTY---AGLYR-------------YRVGDILRVTGFHNSAPQFKFIRRKNVLLSIESDKTDEADLQKAVEN  456 (597)
T ss_pred             CeEEEEEEcc---cceeE-------------eecCCEEEEeeccCCCcEEEEEccCCcceecccccCCHHHHHHHHHH
Confidence            4578888753   23443             99999999953    35789999999999999999999999998876

>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B

Probab=97.74  E-value=9.1e-05  Score=57.29  Aligned_cols=81  Identities=17%  Similarity=0.197  Sum_probs=50.0

Q ss_pred             CeEechHHHHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCCCC---C----HHHHHHHHhccCCCCCCCcEEEee
Q 008535          462 AEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREA---S----PEELVTFCGDELPSCMVPRAIFFE  534 (562)
Q Consensus       462 G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~---~----~~~l~~~~~~~l~~~~~p~~i~~~  534 (562)
                      |.++||.+||++|.++|++...+.+.+......+.+.+.|+..++...   .    .+++.+.+++.+.-  .| .+.++
T Consensus         1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lgv--~~-~V~lv   77 (96)
T PF14535_consen    1 GVNVFPSQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRPGFSDDAEDLEALAERIAERLKERLGV--RP-EVELV   77 (96)
T ss_dssp             TEEE-HHHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHSS---E-EEEEE
T ss_pred             CcEECHHHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcCc--eE-EEEEE
Confidence            789999999999999999994444444444456778888888876432   1    24555555555433  22 45544


Q ss_pred             c---ccCCCCCcchH
Q 008535          535 D---IPVNSTGKVQK  546 (562)
Q Consensus       535 ~---lP~t~~GKv~r  546 (562)
                      +   ||++ .||..|
T Consensus        78 ~~gtLpr~-~~K~~R   91 (96)
T PF14535_consen   78 PPGTLPRS-EGKAKR   91 (96)
T ss_dssp             -TT-S----SSSS-S
T ss_pred             CCCCccCC-CCcceE
Confidence            4   9998 688766

>PLN02247 indole-3-acetic acid-amido synthetase

Probab=97.70  E-value=0.0047  Score=63.80  Aligned_cols=59  Identities=12%  Similarity=0.244  Sum_probs=47.1

Q ss_pred             ceeEEEEcchhhhhhhcCCchhhHhhhccceeeeCceeEEc----CCCcEEEeccccceeecCCeEechHHHHHHHhcC
Q 008535          403 TLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRN----PDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSN  477 (562)
Q Consensus       403 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~----~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~  477 (562)
                      +.-||+|+.-   .|.|+             ||.||+.++.    ....+.|++|.+.+..+.|+|.+-.++..++.+.
T Consensus       402 ~~YelVvTt~---~GLYR-------------YrlGDvv~V~GF~n~~P~~~Fv~R~~~vlsi~gEK~tE~~l~~Av~~a  464 (606)
T PLN02247        402 HYYELVVTTF---TGLYR-------------YRVGDILMVTGFYNNAPQFRFVQRRNVVLSIDTDKTNEEDLLKAVTQA  464 (606)
T ss_pred             CeEEEEEEec---CceEE-------------EecCCEEEEeeecCCCceEEEEecCCceeecccccCCHHHHHHHHHHH
Confidence            5578888752   23333             9999998884    3467999999999999999999999998888763

>PLN02620 indole-3-acetic acid-amido synthetase

Probab=97.55  E-value=0.003  Score=65.05  Aligned_cols=59  Identities=12%  Similarity=0.224  Sum_probs=46.6

Q ss_pred             ceeEEEEcchhhhhhhcCCchhhHhhhccceeeeCceeEEc----CCCcEEEeccccceeecCCeEechHHHHHHHhcC
Q 008535          403 TLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRN----PDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSN  477 (562)
Q Consensus       403 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~----~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~  477 (562)
                      +.-||+|+.-   .|.|+             ||.||+.++.    ....+.|++|.+-+..+.|+|.+-.++..++.+.
T Consensus       408 ~~YelvvTt~---~GLyR-------------YrlGDvv~V~Gf~n~~P~~~Fv~R~~~~lsi~gEK~tE~~l~~Av~~a  470 (612)
T PLN02620        408 QEYELVVTTY---AGLYR-------------YRVGDVLRVAGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKNA  470 (612)
T ss_pred             CeEEEEEEec---CceEE-------------EecCCEEEEeeecCCCceEEEEeecCceeecccccCCHHHHHHHHHHH
Confidence            5578888752   23343             9999998884    3467999999999999999999999998777653

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=95.33  E-value=0.17  Score=50.06  Aligned_cols=93  Identities=12%  Similarity=0.176  Sum_probs=78.3

Q ss_pred             eccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcH--HHHHHHHHhhhccceEEecCCCCCHHHHHHHHhhCCceEEE
Q 008535           45 RFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIP--ALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIF  122 (562)
Q Consensus        45 ~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii  122 (562)
                      -+|+.|....+..+|+.|...|..+||+|.+...-+.  .-+...+|+.++|+.++|+.+. .-+....++++.++.+|.
T Consensus       109 ~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g-~~~~~~~l~~df~~tvI~  187 (438)
T COG1541         109 GYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGG-NTERQLELMKDFKPTVIA  187 (438)
T ss_pred             ecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCc-cHHHHHHHHHhcCCcEEE
Confidence            4899999999999999999999999999988877332  2277889999999999999884 345567889999999999


Q ss_pred             EeccchHHHHHHHhhc
Q 008535          123 VDYQFVEVVQNALDIL  138 (562)
Q Consensus       123 ~~~~~~~~~~~~~~~~  138 (562)
                      +..+..-.+.+.....
T Consensus       188 ~tps~~l~lae~~~~~  203 (438)
T COG1541         188 ATPSYLLYLAEEAEEE  203 (438)
T ss_pred             EChHHHHHHHHHHHHc
Confidence            9999887777766655

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=90.99  E-value=2.9  Score=42.79  Aligned_cols=84  Identities=12%  Similarity=0.096  Sum_probs=64.4

Q ss_pred             eccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcH--HHHHHHHHhhhccceEEecCCCCCHHHHHHHHhhCCceEEE
Q 008535           45 RFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIP--ALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIF  122 (562)
Q Consensus        45 ~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii  122 (562)
                      -+|..++...+...+..+...|+++||++.+..+.+.  ......+++..+|+.+++...   .+.....++..++.+++
T Consensus       105 ~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~i~~~~~t~l~  181 (445)
T TIGR03335       105 FLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRIIESYRPTGIV  181 (445)
T ss_pred             eecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHHHHHhCCCEEE
Confidence            3799999999888999998899999999999887654  233456788899998876643   23456788999999988


Q ss_pred             EeccchHHH
Q 008535          123 VDYQFVEVV  131 (562)
Q Consensus       123 ~~~~~~~~~  131 (562)
                      ......-.+
T Consensus       182 ~~ps~ll~L  190 (445)
T TIGR03335       182 ASVFKLLRL  190 (445)
T ss_pred             ECHHHHHHH
Confidence            766544333

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=90.20  E-value=3.2  Score=42.12  Aligned_cols=89  Identities=9%  Similarity=0.140  Sum_probs=69.0

Q ss_pred             eccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcH--HHHHHHHHhhhccceEEecCCCCCHHHHHHHHhhCCceEEE
Q 008535           45 RFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIP--ALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIF  122 (562)
Q Consensus        45 ~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii  122 (562)
                      .+|..++......++..+...|+++||++....+.+.  ..+...+++.+.|+..+++++.. .+.+...+++.++.+++
T Consensus        94 ~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~~~~~t~l~  172 (422)
T TIGR02155        94 GYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQLIQDFKPDIIM  172 (422)
T ss_pred             ccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHHHHHHCCCEEE
Confidence            3688888777777888888899999999887665442  22334677889999999887654 57788999999999999


Q ss_pred             EeccchHHHHHH
Q 008535          123 VDYQFVEVVQNA  134 (562)
Q Consensus       123 ~~~~~~~~~~~~  134 (562)
                      ........+...
T Consensus       173 ~~Ps~l~~L~~~  184 (422)
T TIGR02155       173 VTPSYMLNLLEE  184 (422)
T ss_pred             EcHHHHHHHHHH
Confidence            998876665543

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=85.54  E-value=5  Score=36.69  Aligned_cols=75  Identities=19%  Similarity=0.167  Sum_probs=54.1

Q ss_pred             CceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcH--HHHHHHHHhhhccceEEecCCCCCHHHHHHH
Q 008535           35 DATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIP--ALYKLHFAVPMAGAVLSALNTRLDSATLASI  112 (562)
Q Consensus        35 ~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~  112 (562)
                      +.++++....-.|...+...+       ...|++++|++. ..|-.-  -....+++++..|++.+.+ +.++++++.+.
T Consensus       150 ~D~a~l~yTsg~~~~~~~~~~-------~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~~-~rFd~~~~l~~  220 (227)
T TIGR03089       150 TAPALVAGGGEWTGAELVAAA-------RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVLV-THPDPARLDQI  220 (227)
T ss_pred             CcceeeeccccccHHHHHHHH-------hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhccCceEEEe-cCCCHHHHHHH
Confidence            445554433333444443332       567899999999 888764  4446789999999998888 68999999999


Q ss_pred             HhhCCc
Q 008535          113 LRQLEA  118 (562)
Q Consensus       113 l~~~~~  118 (562)
                      +++.++
T Consensus       221 i~~~~v  226 (227)
T TIGR03089       221 AETERV  226 (227)
T ss_pred             HHhhcC
Confidence            988775

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	562
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		1e-56
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		8e-42
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		2e-30
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		5e-28
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		3e-27
3ipl_A	501	Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig		7e-27
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		3e-25
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		1e-23
2qvz_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO		1e-23
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		1e-23
2v7b_A	529	Crystal Structures Of A Benzoate Coa Ligase From Bu		1e-23
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		1e-23
2qvx_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO		3e-23
3cw8_X	504	4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb		4e-23
1t5d_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl		5e-23
3dlp_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P,		6e-23
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		7e-23
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		7e-23
3rg2_A	617	Structure Of A Two-Domain Nrps Fusion Protein Conta		2e-22
1t5h_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE		5e-22
3o82_A	544	Structure Of Base N-Terminal Domain From Acinetobac		2e-21
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		7e-21
2wd9_A	569	Crystal Structure Of Human Acyl-coa Synthetase Medi		1e-20
3b7w_A	570	Crystal Structure Of Human Acyl-Coa Synthetase Medi		1e-20
3t5b_A	396	Crystal Structure Of N-Terminal Domain Of Facl13 Fr		1e-20
1mdb_A	539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		4e-20
2p20_A	652	Acetyl-Coa Synthetase, R584a Mutation Length = 652		5e-20
1pg3_A	652	Acetyl Coa Synthetase, Acetylated On Lys609 Length		5e-20
2p2q_A	652	Acetyl-Coa Synthetase, R584e Mutation Length = 652		8e-20
2p2f_A	652	Acetyl-coa Synthetase, Wild-type With Acetate, Amp,		8e-20
2p2m_A	652	Acetyl-Coa Synthetase, R194a Mutation Length = 652		9e-20
2p2b_A	652	Acetyl-coa Synthetase, V386a Mutation Length = 652		3e-19
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		4e-19
2p2j_A	652	Acetyl-Coa Synthetase, K609a Mutation Length = 652		4e-19
1md9_A	539	Crystal Structure Of Dhbe In Complex With Dhb And A		5e-19
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		5e-19
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		6e-19
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		2e-18
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		8e-18
1ry2_A	663	Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe		2e-17
3etc_A	580	2.1 A Structure Of Acyl-Adenylate Synthetase From M		2e-17
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		1e-16
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		1e-14
4gr5_A	570	Crystal Structure Of Slgn1deltaasub In Complex With		2e-08
1amu_A	563	Phenylalanine Activating Domain Of Gramicidin Synth		2e-08
2vsq_A	1304	Structure Of Surfactin A Synthetase C (Srfa-C), A N		6e-08
3l8c_A	521	Structure Of Probable D-Alanine--Poly(Phosphoribito		1e-06
3dhv_A	512	Crystal Structure Of Dlta Protein In Complex With D		2e-04
3fcc_A	512	Crystal Structure Of Dlta Protein In Complex With A		2e-04

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score =  217 bits (552), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 173/552 (31%), Positives = 255/552 (46%), Gaps = 67/552 (12%)
Query: 24  DFLERAAHVYGD---ATSIIYGTV-RFSWRQTHQICLKLASALAQLKISRGDIVAAMAPN 79
           DFLERAA ++G     + +  G V R ++ + +Q   +L   L  L +  GD VA +  N
Sbjct: 22  DFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFN 81
Query: 80  IPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILS 139
                + +FAVP  GAVL   N RL    +A IL   E K++  D   + +V+     L 
Sbjct: 82  HFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELK 141
Query: 140 PNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDP 199
                             H+      +    P G L Y + L              E DP
Sbjct: 142 ---------------TVQHF----VVMDEKAPEGYLAYEEAL------------GEEADP 170
Query: 200 ISV--------NYTSGSTGDPKGVVYSHRGAYLNSLAQ--ISRCDVRDMPVFLWTLDMFR 249
           + V         YT+G+TG PKGVVYSHR   L+SLA   +    + +  V L  + MF 
Sbjct: 171 VRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFH 230
Query: 250 CNGWCCTWAMAAVGGINVC----IRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASAS 305
            N WC  +A   VG   V     +   S   +FD      VT   G P +   +A+   S
Sbjct: 231 VNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDG---EGVTFTAGVPTVWLALADYLES 287
Query: 306 DQNQLQRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSAL 365
             ++L+    +V+ G      ++ +    G  +R  YG+TE   P +V+ +      S  
Sbjct: 288 TGHRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTET-SPVVVQNFVKSHLESLS 346
Query: 366 DHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKAT 425
           + E    K + GL   L++     ++   + VP DGK LGEV  +   +  GY+ N +AT
Sbjct: 347 EEEKLTLKAKTGLPIPLVRLRVADEEG--RPVPKDGKALGEVQLKGPWITGGYYGNEEAT 404
Query: 426 EEAFR-NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAA 484
             A   +G++ TGD+AV + +GYV++KDR KD+I SG E ISS+++E  L+ +PKV EAA
Sbjct: 405 RSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAA 464
Query: 485 VVGKVDDQLKEVPVAFVKLKEGREASPEEL------VTFCGDELPSCMVPRAIFFEDIPV 538
           VV     + +E P+A V +  G + +PEEL        F   +LP   V    F E+IP 
Sbjct: 465 VVAIPHPKWQERPLAVV-VPRGEKPTPEELNEHLLKAGFAKWQLPDAYV----FAEEIPR 519
Query: 539 NSTGKVQKFVLR 550
            S GK  K  LR
Sbjct: 520 TSAGKFLKRALR 531

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score =  168 bits (425), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 148/524 (28%), Positives = 235/524 (44%), Gaps = 62/524 (11%)
Query: 44  VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTR 103
           VR ++ Q + +  + A  L  L I++GD VA + PN      L +     GAV   +NTR
Sbjct: 42  VRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTR 101
Query: 104 LDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPST 163
           L +  ++ IL    +K++                    +    AP++  I       P T
Sbjct: 102 LAAPEVSFILSDSGSKVVI-------------------YGAPSAPVIDAI-RAQADPPGT 141
Query: 164 CSVANNFPSGSLDYNDLLEMGKADFEMMQPNHEC---DPISVNYTSGSTGDPKGVVYSHR 220
             V +   + SL   + L    AD    +P  EC   D + + YTSG+TG PKGVV++H 
Sbjct: 142 --VTDWIGADSL--AERLRSAAAD----EPAVECGGDDNLFIMYTSGTTGHPKGVVHTHE 193
Query: 221 GAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCIRTVSAKIIFDS 280
             +  + +  S  DVR     L  L MF           A  G   + +    A  ++  
Sbjct: 194 SVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSL 253
Query: 281 ILIHKVTHLCGQPRILNMI------ANASASDQNQLQRKVIIVIAGVLPTIEVLEQV-AN 333
           I+  +V      P ILN +      A   A D           I G  P  E L ++ A 
Sbjct: 254 IVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYF-------ITGGAPMPEALIKIYAA 306
Query: 334 FGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNT 393
               +   Y +TE  G   +           L  E  + K        +   V V+  + 
Sbjct: 307 KNIEVVQGYALTESCGGGTL-----------LLSEDALRKAGSAGRATMFTDVAVRGDDG 355
Query: 394 MKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDR 453
           +  +   G+  GEV+ +++ ++  Y+  P+AT +AF NGW+ TGD+   + +GY+ +KDR
Sbjct: 356 V--IREHGE--GEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDR 411
Query: 454 RKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEE 513
            KD+IISG E +   E+E+V++  P V E AV+G  D++  E+  A V + +  E S ++
Sbjct: 412 LKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV-VADQNEVSEQQ 470
Query: 514 LVTFCGDELPSCMVPRAIFF-EDIPVNSTGKVQKFVLRGKVNAT 556
           +V +CG  L    +P+ + F E IP N TGK+ K VLR + +AT
Sbjct: 471 IVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQYSAT 514

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score =  130 bits (328), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 132/531 (24%), Positives = 244/531 (45%), Gaps = 62/531 (11%)
Query: 46  FSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLD 105
           +++   H I  ++A+   +L +++ D+V  + PN P       A    GA  +A N    
Sbjct: 89  YTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFT 148
Query: 106 SATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCS 165
            A +A   +    K+I  + ++V+ ++   +        D   ++V I + +        
Sbjct: 149 PAEIAKQAKASNTKLIITEARYVDKIKPLQN--------DDGVVIVCIDDNESVP----- 195
Query: 166 VANNFPSGSLDYNDLLEMGKADFEMMQPNHECDP---ISVNYTSGSTGDPKGVVYSHRGA 222
                P G L + +L +      E++  + E  P   +++ Y+SG+TG PKGV+ +H+G 
Sbjct: 196 ----IPEGCLRFTELTQSTTEASEVID-SVEISPDDVVALPYSSGTTGLPKGVMLTHKG- 249
Query: 223 YLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCIRTVSAKII----F 278
            + S+AQ  + D  +  ++  + D+  C      + + A+  I +C   V A I+    F
Sbjct: 250 LVTSVAQ--QVDGENPNLYFHSDDVILC--VLPMFHIYALNSIMLCGLRVGAAILIMPKF 305
Query: 279 DSILIHKVTHLCGQ------PRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVA 332
           +  L+ ++   C        P I+  IA +S +++  L   + +V +G  P  + LE   
Sbjct: 306 EINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLS-SIRVVKSGAAPLGKELEDAV 364
Query: 333 NFGF---NIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVK 389
           N  F    +   YGMTE  GP +         + +L    E    + G    +++  ++K
Sbjct: 365 NAKFPNAKLGQGYGMTEA-GPVL---------AMSLGFAKEPFPVKSGACGTVVRNAEMK 414
Query: 390 QQNTMKSVPHDGKTL-----GEVMFRANTVMLGYFKNPKATEEAF-RNGWYHTGDLAVRN 443
             +     P  G +L     GE+  R + +M GY  NP AT E   ++GW HTGD+ + +
Sbjct: 415 IVD-----PDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLID 469
Query: 444 PDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKL 503
            D  + + DR K++I      ++  E+EA+L+ +P + + AVV   ++   EVPVAFV  
Sbjct: 470 DDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVK 529
Query: 504 KEGREASPEELVTFCGDELPSCMVPRAIFF-EDIPVNSTGKVQKFVLRGKV 553
            +  E S +++  F   ++        +FF E IP   +GK+ +  LR K+
Sbjct: 530 SKDSELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKL 580

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score =  122 bits (306), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 129/526 (24%), Positives = 234/526 (44%), Gaps = 60/526 (11%)
Query: 46  FSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLD 105
           +++        ++AS L ++ I +GD++    P+ P            GA+++A N    
Sbjct: 50  YTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFST 109
Query: 106 SATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKC-DKAPLLVTIPECDHYQPSTC 164
            A LA   +   AK++     + E V++          C D AP       C H+   T 
Sbjct: 110 PAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSAP-----DGCLHFSELTQ 164
Query: 165 SVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYL 224
           +  N  P   +  +D+                   +++ Y+SG+TG PKGV+ +H+G  +
Sbjct: 165 ADENEAPQVDISPDDV-------------------VALPYSSGTTGLPKGVMLTHKG-LI 204
Query: 225 NSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCIRTVSAKI-------- 276
            S+AQ  + D  +  ++  + D+  C      + + A+  I +C   V A I        
Sbjct: 205 TSVAQ--QVDGDNPNLYFHSEDVILC--VLPMFHIYALNSIMLCGLRVGAPILIMPKFEI 260
Query: 277 --IFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVANF 334
             +   I  +KV+     P ++  IA +   D++ L   + ++ +G  P  + LE     
Sbjct: 261 GSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLS-SLRMIKSGGAPLGKELEDTVRA 319
Query: 335 GF---NIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVK-- 389
            F    +   YGMTE  GP +         +  L    E    + G    +++  ++K  
Sbjct: 320 KFPQARLGQGYGMTEA-GPVL---------AMCLAFAKEPFDIKPGACGTVVRNAEMKIV 369
Query: 390 QQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAF-RNGWYHTGDLAVRNPDGYV 448
              T  S+P +    GE+  R + +M GY  +P+AT     + GW HTGD+   + D  +
Sbjct: 370 DPETGASLPRNQP--GEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDEL 427
Query: 449 QMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGRE 508
            + DR K++I      ++  E+EA+L+++P++ +AAVVG  D+   EVPVAFV   E  +
Sbjct: 428 FIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQ 487
Query: 509 ASPEELVTFCGDE-LPSCMVPRAIFFEDIPVNSTGKVQKFVLRGKV 553
           A+ +E+  +   + +    + R  F E IP   +GK+ +  L+ K+
Sbjct: 488 ATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKL 533

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score =  120 bits (300), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 125/537 (23%), Positives = 210/537 (39%), Gaps = 52/537 (9%)
Query: 20  LTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPN 79
            T  D   R A ++ D T+ +   VR + R       +LAS L +  +  GD VA ++ N
Sbjct: 6   FTLADVYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQN 65
Query: 80  IPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILS 139
              + +L  AV + GA+L  +N RL++  +A +L      ++     + ++V   L  L 
Sbjct: 66  CSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLG 125
Query: 140 PNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNH-ECD 198
              K                       A     GS  +    ++  +D     P     D
Sbjct: 126 GVKK-----------------------AYAIGDGSGPFAPFKDLA-SDTPFSAPEFGAAD 161
Query: 199 PISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWA 258
              + +T+   G P+G + S     +   + +    + +  V L  L +F   G      
Sbjct: 162 GFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLT 221
Query: 259 MAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVI 318
           +   GG +V             I  HKVT +     +L  I + +A  Q    R V    
Sbjct: 222 LQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAPAQLASLRAVT--- 278
Query: 319 AGVLPTIEVLEQVANFGFNIRH--AYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHRE 376
              L T E +E+      N      +G +E  G +    ++   +S+             
Sbjct: 279 --GLDTPETIERFEATCPNATFWATFGQSETSGLSTFAPYRDRPKSAG------------ 324
Query: 377 GLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHT 436
               L  + V V         P +   +GE++ R  TV  GY+ N  AT+ AFRNGW+HT
Sbjct: 325 --RPLFWRTVAVVDAEDRPLPPGE---VGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHT 379
Query: 437 GDLAVRNPDGYVQMKDR--RKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLK 494
           GD+   + DGY+    R   K++I +G E +   EVE  L  +P + +A V+G  D Q  
Sbjct: 380 GDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWS 439
Query: 495 EVPVAFVKLKEGREASPEELVTFCGDELPSCMVPR-AIFFEDIPVNSTGKVQKFVLR 550
           E   A    K G   + + L  F    +     P+  +F E +P ++ G + +  ++
Sbjct: 440 EAIKAVCVCKPGESIAADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVK 496

>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501

Iteration: 1
 Score =  118 bits (296), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 134/544 (24%), Positives = 229/544 (42%), Gaps = 78/544 (14%)
Query: 23  IDF-LERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIP 81
           +DF L + A   G   +I  G   ++++  +     LA  L   + SR  +   +  +I 
Sbjct: 3   LDFWLYKQAQQNGHHIAITDGQESYTYQNLYCEASLLAKRLKAYQQSR--VGLYIDNSIQ 60
Query: 82  ALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIF----VDYQFVEVVQNALDI 137
           ++  +H A  +A   ++ +NTRL    + + +R ++ ++IF    ++ +  ++V +  DI
Sbjct: 61  SIILIH-ACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIV-SLDDI 118
Query: 138 LSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHEC 197
                      LL       +   +   V    PS  L+ +  L+               
Sbjct: 119 EFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLD--------------- 163
Query: 198 DPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTW 257
           D  S+ +TSG+TG  K V  + R  Y +++     C          +L   R   W    
Sbjct: 164 DIASIMFTSGTTGPQKAVPQTFRNHYASAIG----CKE--------SLGFDRDTNWLSVL 211
Query: 258 AMAAVGGINVCIRTV------------SAKIIFDSILIHKVTHLCGQPRILNMIANASAS 305
            +  + G++V +R V            +A+ I   I   ++TH+   P+ LN +      
Sbjct: 212 PIYHISGLSVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLH 271
Query: 306 DQNQLQRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSAL 365
           +   LQ+   I++ G   +  ++E    +   I +++GMTE               S  L
Sbjct: 272 EPYNLQK---ILLGGAKLSATMIETALQYNLPIYNSFGMTETC-------------SQFL 315
Query: 366 DHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKAT 425
               EM   R     +    VDVK +N  K    +G   GE+M +   VM GY   P   
Sbjct: 316 TATPEMLHARPDTVGMPSANVDVKIKNPNK----EGH--GELMIKGANVMNGYLY-PTDL 368
Query: 426 EEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAV 485
              F NG+++TGD+A  + +GYV + DRRKD+IISG E I   ++E V    P + +A  
Sbjct: 369 TGTFENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVC 428
Query: 486 VGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFEDI---PVNSTG 542
           VG  DD   +VP  +       + S  +L+ +    L    VP+   FE +   P  STG
Sbjct: 429 VGHPDDTWGQVPKLY--FVSESDISKAQLIAYLSKHLAKYKVPK--HFEKVDTLPYTSTG 484
Query: 543 KVQK 546
           K+Q+
Sbjct: 485 KLQR 488

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score =  113 bits (282), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 107/368 (29%), Positives = 164/368 (44%), Gaps = 33/368 (8%)
Query: 196 ECDPISVNYTSGSTGDPKGVVYSHRG--AYLNSLAQISRCDVRDMPVFLWTLDMFRCNGW 253
           + DP  V YTSG+TG PKG V   R     L++LA   +    D  V +  L +F  +G 
Sbjct: 154 DGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGED--VLVQGLPLFHVHGL 211
Query: 254 CCT--WAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQ 311
                  +   G +    R  +     +  L    T L G P + + IA    +D    +
Sbjct: 212 VLGILGPLRRGGSVRHLGRFSTEGAARE--LNDGATMLFGVPTMYHRIAETLPADPELAK 269
Query: 312 R----KVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDH 367
                ++++  +  LP  +     A  G  +   YGMTE L    VR    +GE      
Sbjct: 270 ALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRA---DGEP----- 321
Query: 368 EHEMTKHREGLNNLLIQGVDVK--QQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKAT 425
                  R G   + + GV+++  +++       DG+++GE+  R   +   Y   P AT
Sbjct: 322 -------RAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDAT 374
Query: 426 EEAF-RNGWYHTGDLAVRNPDGYVQMKDRR-KDIIISGAEIISSLEVEAVLLSNPKVLEA 483
             AF  +G++ TGD+AVR+PDGYV++  R+  D+I SG   I + E+E  LL +P+V EA
Sbjct: 375 AAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREA 434
Query: 484 AVVGKVDDQLKEVPVAF-VKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNST 541
           AV G+ D  L E  VA+ V        +   L       L     PR + + D +P N  
Sbjct: 435 AVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHVAARLAPHKRPRVVRYLDAVPRNDM 494
Query: 542 GKVQKFVL 549
           GK+ K  L
Sbjct: 495 GKIMKRAL 502

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score =  108 bits (269), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 121/534 (22%), Positives = 220/534 (41%), Gaps = 73/534 (13%)
Query: 44  VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSAL--- 100
           V  ++ +  ++ ++LA A+ +  ++    +   + N      L F +P+ GA+   +   
Sbjct: 49  VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSEN-----SLQFFMPVLGALFIGVAVA 103
Query: 101 --NTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDH 158
             N   +   L + +   +  ++FV  + ++ + N    L    K     +++   + D+
Sbjct: 104 PANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQK-----IIIMDSKTDY 158
Query: 159 --YQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVV 216
             +Q     V ++ P G  +Y         DF     + +     +  +SGSTG PKGV 
Sbjct: 159 QGFQSMYTFVTSHLPPGFNEY---------DFVPESFDRDKTIALIMNSSGSTGLPKGVA 209
Query: 217 YSHRGAYLNSLAQISRCDVRDMPVF----------LWTLDMFRCNGWCCTWAMAAVGGIN 266
             HR       A +     RD P+F          L  +      G   T      G   
Sbjct: 210 LPHR------TACVRFSHARD-PIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRV 262
Query: 267 VCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIE 326
           V +     ++   S+  +K+      P + +  A ++  D+  L     I   G   + E
Sbjct: 263 VLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKE 322
Query: 327 VLEQVAN-FGF-NIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQ 384
           V E VA  F    IR  YG+TE     ++    PEG+             + G    ++ 
Sbjct: 323 VGEAVAKRFHLPGIRQGYGLTETTSAILI---TPEGDD------------KPGAVGKVVP 367
Query: 385 GVDVKQQNTMKSVPHDGKTLG-----EVMFRANTVMLGYFKNPKATEEAF-RNGWYHTGD 438
             + K  +        GKTLG     E+  R   +M GY  NP+AT     ++GW H+GD
Sbjct: 368 FFEAKVVDL-----DTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGD 422
Query: 439 LAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPV 498
           +A  + D +  + DR K +I      ++  E+E++LL +P + +A V G  DD   E+P 
Sbjct: 423 IAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPA 482
Query: 499 AFVKLKEGREASPEELVTFCGDELPSCMVPRA--IFFEDIPVNSTGKVQKFVLR 550
           A V L+ G+  + +E+V +   ++ +    R   +F +++P   TGK+    +R
Sbjct: 483 AVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIR 536

>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score =  108 bits (269), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 134/504 (26%), Positives = 210/504 (41%), Gaps = 77/504 (15%)
Query: 73  VAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILR--QLEAKIIFVDYQFVEV 130
           VA +APN   +     A+   GAV + LN RL SA LA +++  ++ A +I V  Q  + 
Sbjct: 57  VAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADA 116
Query: 131 VQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGS----LDYNDLLEMGKA 186
           +                                      F SGS    +   DL+  G+ 
Sbjct: 117 I--------------------------------------FQSGSGARIIFLGDLVRDGEP 138
Query: 187 ---DFEMMQPNHE-CDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRD--MPV 240
                 +  P  E   P  + YTSG+TG PK  +   R A    L   ++  +R     V
Sbjct: 139 YSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNV 198
Query: 241 FLWTLDMFRCNGWCCTWAMA-AVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMI 299
            L  + ++   G+      A A+ G  V +           +   +VT L   P  L+ +
Sbjct: 199 VLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDAL 258
Query: 300 ANASASDQNQLQRKVI--IVIAGVLPTIEVLEQVANF--GFNIRHAYGMTEVLGPAIVRQ 355
           A A+A   + L+   +  +  AG      VLE V     G  + +AYG TE +    +RQ
Sbjct: 259 AAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NAYGTTEAMNSLYMRQ 317
Query: 356 WKPEGE-SSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRA-NT 413
            K   E +     E  + +   G++ ++  G +                 GE++  A ++
Sbjct: 318 PKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEE-----------------GELIVAASDS 360
Query: 414 VMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAV 473
             +GY   P+AT E  ++GWY T D+AV  P+G V++  R  D+IISG E I   E+E V
Sbjct: 361 AFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERV 420
Query: 474 LLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFC-GDELPSCMVPRAIF 532
           L + P V E  V+G  D +  +   A V  + G   S + L TFC   EL     P+  F
Sbjct: 421 LGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYF 480
Query: 533 FED-IPVNSTGKVQKFVLRGKVNA 555
             D +P N+  KV +  L  +V++
Sbjct: 481 ILDQLPKNALNKVLRRQLVQQVSS 504

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 121/534 (22%), Positives = 220/534 (41%), Gaps = 73/534 (13%)
Query: 44  VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSAL--- 100
           V  ++ +  ++ ++LA A+ +  ++    +   + N      L F +P+ GA+   +   
Sbjct: 49  VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSEN-----SLQFFMPVLGALFIGVAVA 103
Query: 101 --NTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDH 158
             N   +   L + +   +  ++FV  + ++ + N    L    K     +++   + D+
Sbjct: 104 PANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQK-----IIIMDSKTDY 158
Query: 159 --YQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVV 216
             +Q     V ++ P G  +Y         DF     + +     +  +SGSTG PKGV 
Sbjct: 159 QGFQSMYTFVTSHLPPGFNEY---------DFVPESFDRDKTIALIMNSSGSTGLPKGVA 209
Query: 217 YSHRGAYLNSLAQISRCDVRDMPVF----------LWTLDMFRCNGWCCTWAMAAVGGIN 266
             HR       A +     RD P+F          L  +      G   T      G   
Sbjct: 210 LPHR------TACVRFSHARD-PIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRV 262
Query: 267 VCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIE 326
           V +     ++   S+  +K+      P + +  A ++  D+  L     I   G   + E
Sbjct: 263 VLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKE 322
Query: 327 VLEQVAN-FGF-NIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQ 384
           V E VA  F    IR  YG+TE     ++    PEG+             + G    ++ 
Sbjct: 323 VGEAVAKRFHLPGIRQGYGLTETTSAILI---TPEGDD------------KPGAVGKVVP 367
Query: 385 GVDVKQQNTMKSVPHDGKTLG-----EVMFRANTVMLGYFKNPKATEEAF-RNGWYHTGD 438
             + K  +        GKTLG     E+  R   +M GY  NP+AT     ++GW H+GD
Sbjct: 368 FFEAKVVDL-----DTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGD 422
Query: 439 LAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPV 498
           +A  + D +  + DR K +I      ++  E+E++LL +P + +A V G  DD   E+P 
Sbjct: 423 IAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPA 482
Query: 499 AFVKLKEGREASPEELVTFCGDELPSCMVPRA--IFFEDIPVNSTGKVQKFVLR 550
           A V L+ G+  + +E+V +   ++ +    R   +F +++P   TGK+    +R
Sbjct: 483 AVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIR 536

>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529

Iteration: 1
 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 141/565 (24%), Positives = 233/565 (41%), Gaps = 55/565 (9%)
Query: 3   MECLGGRLCSASANNVPLTPIDF-----LERAAHVYGDATSIIYGTVRFSWRQTHQICLK 57
           ME L  +  +  A  V   P  F     L R        T+ I  T   ++ +  +   +
Sbjct: 1   MEALLEKAANPPAATVEAPPALFNFAAYLFRLNETRAGKTAYIDDTGSTTYGELEERARR 60
Query: 58  LASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLE 117
            ASAL  L +   + +  +  +  AL         AG V    NT L  A    +L    
Sbjct: 61  FASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSH 120
Query: 118 AKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDY 177
           A+ +      V+ V  AL+  S  H  D   L+V+ P     +P    +          +
Sbjct: 121 ARAVIASGALVQNVTQALE--SAEH--DGCQLIVSQPR--ESEPRLAPL----------F 164
Query: 178 NDLLEMGKADFEMMQPNHECDPISV-NYTSGSTGDPKGVVYSHRGAYLNS-LAQISRCDV 235
            +L++      +       CD I+   Y+SGSTG PKG V++H   Y  + L       +
Sbjct: 165 EELIDAAAPAAKAAATG--CDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGI 222
Query: 236 RDMPVFLWTLDMFRCNGWC--CTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQP 293
            +  V      +F   G     T+ ++      +     +A  IF  ++ H+ T   G P
Sbjct: 223 AENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVP 282
Query: 294 RIL-NMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQ-VANFGFNIRHAYGMTEVLGPA 351
            +  NM+ + +   +  +  ++       LP  E+ E+  A+FG  I    G TE+L   
Sbjct: 283 TLYANMLVSPNLPARADVAIRICTSAGEALPR-EIGERFTAHFGCEILDGIGSTEMLHIF 341
Query: 352 IVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRA 411
           +  +      + A+++         G     + G +++ ++       DG+ +G++  + 
Sbjct: 342 LSNR------AGAVEY---------GTTGRPVPGYEIELRDEAGHAVPDGE-VGDLYIKG 385
Query: 412 NTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVE 471
            +  + Y+ N + +   F   W  +GD   R P+G      R  D++    + +S +EVE
Sbjct: 386 PSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVE 445
Query: 472 AVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASP-----EELVTFCGDELPSCM 526
            VL+ +  VLEAAVVG VD        AFV LK  RE +P     EEL  F  D L    
Sbjct: 446 MVLVQHDAVLEAAVVG-VDHGGLVKTRAFVVLK--REFAPSEILAEELKAFVKDRLAPHK 502
Query: 527 VPRAI-FFEDIPVNSTGKVQKFVLR 550
            PR I F +D+P  +TGK+Q+F LR
Sbjct: 503 YPRDIVFVDDLPKTATGKIQRFKLR 527

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 121/534 (22%), Positives = 220/534 (41%), Gaps = 73/534 (13%)
Query: 44  VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSAL--- 100
           V  ++ +  ++ ++LA A+ +  ++    +   + N      L F +P+ GA+   +   
Sbjct: 54  VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSEN-----SLQFFMPVLGALFIGVAVA 108
Query: 101 --NTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDH 158
             N   +   L + +   +  ++FV  + ++ + N    L    K     +++   + D+
Sbjct: 109 PANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQK-----IIIMDSKTDY 163
Query: 159 --YQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVV 216
             +Q     V ++ P G  +Y         DF     + +     +  +SGSTG PKGV 
Sbjct: 164 QGFQSMYTFVTSHLPPGFNEY---------DFVPESFDRDKTIALIMNSSGSTGLPKGVA 214
Query: 217 YSHRGAYLNSLAQISRCDVRDMPVF----------LWTLDMFRCNGWCCTWAMAAVGGIN 266
             HR       A +     RD P+F          L  +      G   T      G   
Sbjct: 215 LPHR------TACVRFSHARD-PIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRV 267
Query: 267 VCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIE 326
           V +     ++   S+  +K+      P + +  A ++  D+  L     I   G   + E
Sbjct: 268 VLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKE 327
Query: 327 VLEQVAN-FGF-NIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQ 384
           V E VA  F    IR  YG+TE     ++    PEG+             + G    ++ 
Sbjct: 328 VGEAVAKRFHLPGIRQGYGLTETTSAILI---TPEGDD------------KPGAVGKVVP 372
Query: 385 GVDVKQQNTMKSVPHDGKTLG-----EVMFRANTVMLGYFKNPKATEEAF-RNGWYHTGD 438
             + K  +        GKTLG     E+  R   +M GY  NP+AT     ++GW H+GD
Sbjct: 373 FFEAKVVDL-----DTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGD 427
Query: 439 LAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPV 498
           +A  + D +  + DR K +I      ++  E+E++LL +P + +A V G  DD   E+P 
Sbjct: 428 IAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPA 487
Query: 499 AFVKLKEGREASPEELVTFCGDELPSCMVPRA--IFFEDIPVNSTGKVQKFVLR 550
           A V L+ G+  + +E+V +   ++ +    R   +F +++P   TGK+    +R
Sbjct: 488 AVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIR 541

>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score =  106 bits (264), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 133/504 (26%), Positives = 209/504 (41%), Gaps = 77/504 (15%)
Query: 73  VAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILR--QLEAKIIFVDYQFVEV 130
           VA +APN   +     A+   GAV + LN RL SA LA +++  ++ A +I V  Q  + 
Sbjct: 57  VAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADA 116
Query: 131 VQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGS----LDYNDLLEMGKA 186
           +                                      F SGS    +   DL+  G+ 
Sbjct: 117 I--------------------------------------FQSGSGARIIFLGDLVRDGEP 138
Query: 187 ---DFEMMQPNHE-CDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRD--MPV 240
                 +  P  E   P  + YTSG+TG PK  +   R A    L   ++  +R     V
Sbjct: 139 YSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNV 198
Query: 241 FLWTLDMFRCNGWCCTWAMA-AVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMI 299
            L  + ++   G+      A A+ G  V +           +   +VT L   P  L+ +
Sbjct: 199 VLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDAL 258
Query: 300 ANASASDQNQLQRKVI--IVIAGVLPTIEVLEQVANF--GFNIRHAYGMTEVLGPAIVRQ 355
           A A+A   + L+   +  +  AG      VLE V     G  + + YG TE +    +RQ
Sbjct: 259 AAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NGYGTTEAMNSLYMRQ 317
Query: 356 WKPEGE-SSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRA-NT 413
            K   E +     E  + +   G++ ++  G +                 GE++  A ++
Sbjct: 318 PKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEE-----------------GELIVAASDS 360
Query: 414 VMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAV 473
             +GY   P+AT E  ++GWY T D+AV  P+G V++  R  D+IISG E I   E+E V
Sbjct: 361 AFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERV 420
Query: 474 LLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFC-GDELPSCMVPRAIF 532
           L + P V E  V+G  D +  +   A V  + G   S + L TFC   EL     P+  F
Sbjct: 421 LGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYF 480
Query: 533 FED-IPVNSTGKVQKFVLRGKVNA 555
             D +P N+  KV +  L  +V++
Sbjct: 481 ILDQLPKNALNKVLRRQLVQQVSS 504

>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504

Iteration: 1
 Score =  106 bits (264), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 134/504 (26%), Positives = 209/504 (41%), Gaps = 77/504 (15%)
Query: 73  VAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILR--QLEAKIIFVDYQFVEV 130
           VA +APN   +     A+   GAV + LN RL SA LA +++  ++ A +I V  Q  + 
Sbjct: 57  VAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADA 116
Query: 131 VQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGS----LDYNDLLEMGKA 186
           +                                      F SGS    +   DL+  G+ 
Sbjct: 117 I--------------------------------------FQSGSGARIIFLGDLVRDGEP 138
Query: 187 ---DFEMMQPNHE-CDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRD--MPV 240
                 +  P  E   P  + YTSG+TG PK  +   R A    L   ++  +R     V
Sbjct: 139 YSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNV 198
Query: 241 FLWTLDMFRCNGWCCTWAMA-AVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMI 299
            L  + ++   G+      A A+ G  V I           +   +VT L   P  L+ +
Sbjct: 199 VLGLMPLYHVVGFFAVLVAALALDGTYVVIEEFRPVDALQLVQQEQVTSLFATPTHLDAL 258
Query: 300 ANASASDQNQLQRKVI--IVIAGVLPTIEVLEQVANF--GFNIRHAYGMTEVLGPAIVRQ 355
           A A+A   + L+   +  +  AG      VLE V     G  + + YG TE +    +RQ
Sbjct: 259 AAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NIYGTTEAMNSLYMRQ 317
Query: 356 WKPEGE-SSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRA-NT 413
            K   E +     E  + +   G++ ++  G +                 GE++  A ++
Sbjct: 318 PKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEE-----------------GELIVAASDS 360
Query: 414 VMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAV 473
             +GY   P+AT E  ++GWY T D+AV  P+G V++  R  D+IISG E I   E+E V
Sbjct: 361 AFVGYLNQPEATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERV 420
Query: 474 LLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFC-GDELPSCMVPRAIF 532
           L + P V E  V+G  D +  +   A V  + G   S + L TFC   EL     P+  F
Sbjct: 421 LGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYF 480
Query: 533 FED-IPVNSTGKVQKFVLRGKVNA 555
             D +P N+  KV +  L  +V++
Sbjct: 481 ILDQLPKNALNKVLRRQLVQQVSS 504

>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504

Iteration: 1
 Score =  105 bits (263), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 133/504 (26%), Positives = 209/504 (41%), Gaps = 77/504 (15%)
Query: 73  VAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILR--QLEAKIIFVDYQFVEV 130
           VA +APN   +     A+   GAV + LN RL SA LA +++  ++ A +I V  Q  + 
Sbjct: 57  VAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADA 116
Query: 131 VQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGS----LDYNDLLEMGKA 186
           +                                      F SGS    +   DL+  G+ 
Sbjct: 117 I--------------------------------------FQSGSGARIIFLGDLVRDGEP 138
Query: 187 ---DFEMMQPNHE-CDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRD--MPV 240
                 +  P  E   P  + YTSG+TG PK  +   R A    L   ++  +R     V
Sbjct: 139 YSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNV 198
Query: 241 FLWTLDMFRCNGWCCTWAMA-AVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMI 299
            L  + ++   G+      A A+ G  V +           +   +VT L   P  L+ +
Sbjct: 199 VLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDAL 258
Query: 300 ANASASDQNQLQRKVI--IVIAGVLPTIEVLEQVANF--GFNIRHAYGMTEVLGPAIVRQ 355
           A A+A   + L+   +  +  AG      VLE V     G  + + YG TE +    +RQ
Sbjct: 259 AAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NIYGTTEAMNSLYMRQ 317
Query: 356 WKPEGE-SSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRA-NT 413
            K   E +     E  + +   G++ ++  G +                 GE++  A ++
Sbjct: 318 PKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEE-----------------GELIVAASDS 360
Query: 414 VMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAV 473
             +GY   P+AT E  ++GWY T D+AV  P+G V++  R  D+IISG E I   E+E V
Sbjct: 361 AFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERV 420
Query: 474 LLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFC-GDELPSCMVPRAIF 532
           L + P V E  V+G  D +  +   A V  + G   S + L TFC   EL     P+  F
Sbjct: 421 LGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYF 480
Query: 533 FED-IPVNSTGKVQKFVLRGKVNA 555
             D +P N+  KV +  L  +V++
Sbjct: 481 ILDQLPKNALNKVLRRQLVQQVSS 504

>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504

Iteration: 1
 Score =  105 bits (263), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 133/504 (26%), Positives = 209/504 (41%), Gaps = 77/504 (15%)
Query: 73  VAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILR--QLEAKIIFVDYQFVEV 130
           VA +APN   +     A+   GAV + LN RL SA LA +++  ++ A +I V  Q  + 
Sbjct: 57  VAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADA 116
Query: 131 VQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGS----LDYNDLLEMGKA 186
           +                                      F SGS    +   DL+  G+ 
Sbjct: 117 I--------------------------------------FQSGSGARIIFLGDLVRDGEP 138
Query: 187 ---DFEMMQPNHE-CDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRD--MPV 240
                 +  P  E   P  + YTSG+TG PK  +   R A    L   ++  +R     V
Sbjct: 139 YSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNV 198
Query: 241 FLWTLDMFRCNGWCCTWAMA-AVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMI 299
            L  + ++   G+      A A+ G  V +           +   +VT L   P  L+ +
Sbjct: 199 VLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDAL 258
Query: 300 ANASASDQNQLQRKVI--IVIAGVLPTIEVLEQVANF--GFNIRHAYGMTEVLGPAIVRQ 355
           A A+A   + L+   +  +  AG      VLE V     G  + + YG TE +    +RQ
Sbjct: 259 AAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NIYGTTEAMNSLYMRQ 317
Query: 356 WKPEGE-SSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRA-NT 413
            K   E +     E  + +   G++ ++  G +                 GE++  A ++
Sbjct: 318 PKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEE-----------------GELIVAASDS 360
Query: 414 VMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAV 473
             +GY   P+AT E  ++GWY T D+AV  P+G V++  R  D+IISG E I   E+E V
Sbjct: 361 AFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVPDMIISGGENIHPSEIERV 420
Query: 474 LLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFC-GDELPSCMVPRAIF 532
           L + P V E  V+G  D +  +   A V  + G   S + L TFC   EL     P+  F
Sbjct: 421 LGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYF 480
Query: 533 FED-IPVNSTGKVQKFVLRGKVNA 555
             D +P N+  KV +  L  +V++
Sbjct: 481 ILDQLPKNALNKVLRRQLVQQVSS 504

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score =  105 bits (262), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 131/554 (23%), Positives = 223/554 (40%), Gaps = 75/554 (13%)
Query: 26  LERAAHVYGD-ATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALY 84
           ++R A V G  A +  +  V  ++ +  ++  +LA  + +  +     +A  + N     
Sbjct: 64  MKRYAQVPGTIAFTDAHAEVNITYSEYFEMACRLAETMKRYGLGLQHHIAVCSEN----- 118
Query: 85  KLHFAVPMAGAVL-----SALNTRLDSATLASILRQLEAKIIFVD---YQFVEVVQNALD 136
            L F +P+ GA+      +  N   +   L + L   +  I+F      Q +  VQ  L 
Sbjct: 119 SLQFFMPVCGALFIGVGVAPTNDIYNERELYNSLSISQPTIVFCSKRALQKILGVQKKLP 178
Query: 137 ILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHE 196
           I+       K  +L +  +    Q     + ++ P+G  +Y         D+     + E
Sbjct: 179 IIQ------KIVILDSREDYMGKQSMYSFIESHLPAGFNEY---------DYIPDSFDRE 223
Query: 197 CDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVF----------LWTLD 246
                +  +SGSTG PKGV  +H+    N   + S C  RD PVF          L  + 
Sbjct: 224 TATALIMNSSGSTGLPKGVELTHK----NICVRFSHC--RD-PVFGNQIIPDTAILTVIP 276
Query: 247 MFRCNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASD 306
                G   T      G   V +     ++   S+  +K+      P + +  A ++  D
Sbjct: 277 FHHGFGMFTTLGYLTCGFRIVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLVD 336
Query: 307 QNQLQRKVIIVIAGVLPTIEVLEQVAN-FGF-NIRHAYGMTEVLGPAIVRQWKPEGESSA 364
           +  L     I   G     EV E VA  F    IR  YG+TE     I+    P G    
Sbjct: 337 KYDLSNLHEIASGGAPLAKEVGEAVAKRFKLPGIRQGYGLTETTSAIII---TPRGRDD- 392
Query: 365 LDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLG-----EVMFRANTVMLGYF 419
                     + G    ++     K  +        GKTLG     E+  +   +M GY 
Sbjct: 393 ----------KPGACGKVVPFFSAKIVDL-----DTGKTLGVNQRGELCVKGPMIMKGYV 437
Query: 420 KNPKATEEAF-RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNP 478
            NP+AT     ++GW H+GD+A  + DGY  + DR K +I      +   E+E++LL +P
Sbjct: 438 NNPEATSALIDKDGWLHSGDIAYYDKDGYFFIVDRLKSLIKYKGYQVPPAELESILLQHP 497
Query: 479 KVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRA--IFFEDI 536
            + +A V G  D    E+P A V L+EG+  + +E++ +   ++ +    R    F +++
Sbjct: 498 FIFDAGVAGIPDPDAGELPAAVVVLEEGKTMTEQEVMDYVAGQVTASKRLRGGVKFVDEV 557
Query: 537 PVNSTGKVQKFVLR 550
           P   TGK+    +R
Sbjct: 558 PKGLTGKIDARKIR 571

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score =  105 bits (262), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 121/534 (22%), Positives = 223/534 (41%), Gaps = 73/534 (13%)
Query: 44  VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSAL--- 100
           V  ++ +  ++ ++LA A+ +  ++    +   + N      L F +P+ GA+   +   
Sbjct: 54  VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSEN-----SLQFFMPVLGALFIGVAVA 108
Query: 101 --NTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDH 158
             N   +   L + +   +  ++FV  + ++ + N    L    K     +++   + D+
Sbjct: 109 PANDCYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQK-----IIIMDSKTDY 163
Query: 159 --YQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVV 216
             +Q     V ++ P G  +Y         DF     + +     +  +SGSTG PKGV 
Sbjct: 164 QGFQSMYTFVTSHLPPGFNEY---------DFVPESFDRDKTIALIMNSSGSTGLPKGVA 214
Query: 217 YSHRGAYLNSLAQISRCDVRDMPVF----------LWTLDMFRCNGWCCTWAMAAVGGIN 266
             HR     +LA +     RD P+F          L  +      G   T      G   
Sbjct: 215 LPHR-----ALA-VRFSHARD-PIFGNQIAPDTAILSVVPFHHGFGMFTTLGYLISGFRV 267
Query: 267 VCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIE 326
           V +     ++   S+  +K+      P + + +A ++  D+  L     I   G   + E
Sbjct: 268 VLMYRFEEELFLRSLQDYKIQSALLVPTLFSFLAKSTLIDKYDLSNLHEIASGGAPLSKE 327
Query: 327 VLEQVAN-FGF-NIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQ 384
           V E VA  F    IR  YG+TE     ++    P+G+             + G    ++ 
Sbjct: 328 VGEAVAKRFHLPGIRQGYGLTETTSAILI---TPKGDD------------KPGAVGKVVP 372
Query: 385 GVDVKQQNTMKSVPHDGKTLG-----EVMFRANTVMLGYFKNPKATEEAF-RNGWYHTGD 438
             + K  +        GKTLG     E+  R   +M GY  NP+AT     ++GW H+GD
Sbjct: 373 FFEAKVVDL-----DTGKTLGVNQRGELSVRGPMIMSGYVNNPEATNALIDKDGWLHSGD 427
Query: 439 LAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPV 498
           +A  + D +  + DR K +I      ++  E+E++LL +P + +A V G  DD   E+P 
Sbjct: 428 IAYWDEDEHFFIVDRLKSLIKYKGCQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPA 487
Query: 499 AFVKLKEGREASPEELVTFCGDELPSCMVPRA--IFFEDIPVNSTGKVQKFVLR 550
           A V L+ G+  + +E+V +   ++ +    R   +F +++P   TGK+    +R
Sbjct: 488 AVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIR 541

>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617

Iteration: 1
 Score =  103 bits (257), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 132/544 (24%), Positives = 225/544 (41%), Gaps = 48/544 (8%)
Query: 16  NNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAA 75
            ++PLT  D L R  H   D+ ++I G  + S+R+ +Q    LA +L +  I  G+    
Sbjct: 25  QDLPLT--DILTR--HAASDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALV 80
Query: 76  MAPNIPALYKLHFAVPMAG-AVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNA 134
              N+  LY   FA+   G A + AL +   S  L +   Q+E  ++  D Q    + + 
Sbjct: 81  QLGNVAELYITFFALLKLGVAPVLALFSHQRS-ELNAYASQIEPALLIADRQ--HALFSG 137
Query: 135 LDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPN 194
            D L+           VT    +H       + N+  SG  +  D +     DF    P+
Sbjct: 138 DDFLN---------TFVT----EHSSIRVVQLLND--SGEHNLQDAINHPAEDF-TATPS 181
Query: 195 HECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWC 254
              +      + G+TG PK +  +H   Y +    +  C       +L  +         
Sbjct: 182 PADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMS 241
Query: 255 CTWAMAA--VGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANA--SASDQNQL 310
              ++     GG  V     SA + F  I  H+V      P  +++   A      + QL
Sbjct: 242 SPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQL 301
Query: 311 QRKVIIVIAGVLPTIEVLEQV-ANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEH 369
               ++ + G   +  +  ++ A  G  ++  +GM E L              + LD   
Sbjct: 302 ASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLV-----------NYTRLDDSA 350
Query: 370 EMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAF 429
           E   H +G        V V      +  P     +G +M R      GY+K+P+    AF
Sbjct: 351 EKIIHTQGYPMCPDDEVWVAD---AEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAF 407
Query: 430 R-NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGK 488
             NG+Y +GDL   +P+GY+ ++ R KD I  G E I++ E+E +LL +P V+ AA+V  
Sbjct: 408 DANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSM 467
Query: 489 VDDQLKEVPVAFVKLKEGREASPEELVTFCGDE-LPSCMVP-RAIFFEDIPVNSTGKVQK 546
            D+ + E   A++ +KE   A   ++  F  ++ +    +P R    + +P+ + GKV K
Sbjct: 468 EDELMGEKSCAYLVVKEPLRAV--QVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDK 525
Query: 547 FVLR 550
             LR
Sbjct: 526 KQLR 529

>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504

Iteration: 1
 Score =  102 bits (255), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 134/504 (26%), Positives = 205/504 (40%), Gaps = 77/504 (15%)
Query: 73  VAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLE--AKIIFVDYQFVEV 130
           VA +APN   +     A+   GAV + LN RL SA LA ++++ E  A +I V  Q  + 
Sbjct: 57  VAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEXTAAVIAVGRQVADA 116
Query: 131 VQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGS----LDYNDLLEMGKA 186
           +                                      F SGS    +   DL+  G+ 
Sbjct: 117 I--------------------------------------FQSGSGARIIFLGDLVRDGEP 138
Query: 187 ---DFEMMQPNHE-CDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRD--MPV 240
                 +  P  E   P  + YTSG+TG PK  +   R A    L   ++  +R     V
Sbjct: 139 YSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFXSTQVGLRHGRHNV 198
Query: 241 FLWTLDMFRCNGWCCTWAMA-AVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMI 299
            L    ++   G+      A A+ G  V +           +   +VT L   P  L+ +
Sbjct: 199 VLGLXPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDAL 258
Query: 300 ANASASDQNQLQRKVI--IVIAGVLPTIEVLEQVANF--GFNIRHAYGMTEVLGPAIVRQ 355
           A A+A   + L+   +  +  AG      VLE V     G  + + YG TE       RQ
Sbjct: 259 AAAAAHAGSSLKLDSLRHVTFAGATXPDAVLETVHQHLPGEKV-NIYGTTEAXNSLYXRQ 317
Query: 356 WKPEGESS-ALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRA-NT 413
            K   E +     E  + +   G++ ++  G +                 GE++  A ++
Sbjct: 318 PKTGTEXAPGFFSEVRIVRIGGGVDEIVANGEE-----------------GELIVAASDS 360
Query: 414 VMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAV 473
             +GY   P+AT E  ++GWY T D+AV  P+G V++  R  D IISG E I   E+E V
Sbjct: 361 AFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDXIISGGENIHPSEIERV 420
Query: 474 LLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFC-GDELPSCMVPRAIF 532
           L + P V E  V+G  D +  +   A V  + G   S + L TFC   EL     P+  F
Sbjct: 421 LGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYF 480
Query: 533 FED-IPVNSTGKVQKFVLRGKVNA 555
             D +P N+  KV +  L  +V++
Sbjct: 481 ILDQLPKNALNKVLRRQLVQQVSS 504

>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544

Iteration: 1
 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 137/554 (24%), Positives = 232/554 (41%), Gaps = 55/554 (9%)
Query: 19  PLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAP 78
           PLT I  L      +  + +II G  + S+ +  ++   LA+ LA+  + +GD      P
Sbjct: 31  PLTRI--LTVGVQSHPHSLAIICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLP 88
Query: 79  NIPALYKLHFAVPMAGAV-LSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDI 137
           N+   Y + FA+  AG V L+AL +      L + ++Q++ K++    Q  EV  N    
Sbjct: 89  NVAEFYIVFFALLKAGVVVLNALYSH-RQYELNAFIKQIQPKLLIGSRQH-EVFSNN-QF 145
Query: 138 LSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHEC 197
           +   H  + +P ++ +   +H        A +F  G LD+ +       DF    P  E 
Sbjct: 146 IDSLHDVNLSPEIILM--LNHQ-------ATDF--GLLDWIETPAETFVDFSST-PADEV 193
Query: 198 DPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTW 257
               +  + GSTG PK +  +H     +  A    C +      L  L            
Sbjct: 194 AFFQL--SGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPG 251
Query: 258 AMAAV--GGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVI 315
           A+  +  GG  V          F  I  H+V      P  + M    +A  ++Q+Q   +
Sbjct: 252 ALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKL 311
Query: 316 IVIAGVLPTIEVLEQVAN-FGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEM--- 371
           + + G      +  QV       ++  +GM E L              + LD   E    
Sbjct: 312 LQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLV-----------NYTRLDDSDEQIFT 360
Query: 372 TKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAF-R 430
           T+ R   ++  I+ VD       + VP +G+ +G +  R      GY+++P+   + F  
Sbjct: 361 TQGRPISSDDEIKIVD----EQYREVP-EGE-IGMLATRGPYTFCGYYQSPEHNSQVFDE 414
Query: 431 NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVD 490
           + +Y++GDL  R PDG +++  R KD I  G E I+S E+E ++L +P+V+ AA+V  VD
Sbjct: 415 DNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVD 474
Query: 491 DQLKEVPVAFVKLKEGREASPEELVTFCGDEL-----PSCMVPRAI-FFEDIPVNSTGKV 544
           +Q  E   AF+  +     +PE         L         +P  I   E +P+ + GKV
Sbjct: 475 EQFGEKSCAFIVSR-----NPELKAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKV 529
Query: 545 QKFVLRGKVNATAV 558
            K  LR  +N +  
Sbjct: 530 DKKQLRSILNTSTT 543

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score = 99.0 bits (245), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 132/563 (23%), Positives = 225/563 (39%), Gaps = 80/563 (14%)
Query: 24  DFLERAAHVYGDATSIIYGTVRF--------SWRQTHQICLKLASALAQLKISRGDIVAA 75
           D ++ AA  +G+ T+II    +F        ++ +  ++  KLAS +++  + +G+ V  
Sbjct: 23  DRIDAAAEKFGEKTAIISAEPKFPSEFPESXNFLEICEVTKKLASGISRKGVRKGEHVGV 82
Query: 76  MAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNAL 135
             PN        +A+    A    +N    S  L  IL   EA  + V     E  +  L
Sbjct: 83  CIPNSIDYVXTIYALWRVAATPVPINPXYKSFELEHILNDSEATTLVVHSXLYENFKPVL 142
Query: 136 DILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNH 195
           +      K     + V   E +                    +++ + G  DFE ++ N 
Sbjct: 143 E------KTGVERVFVVGGEVN------------------SLSEVXDSGSEDFENVKVNP 178
Query: 196 ECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCC 255
           E D   + YT G+TG PKGV  +H     N+L       +      +     F    +  
Sbjct: 179 EEDVALIPYTGGTTGXPKGVXLTHFNLAANALQLAVATGLSHXDTIVGCXPXFHSAEFGL 238
Query: 256 TWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVI 315
                 VG   V     + + + ++I  +K T     P  LN++ N   S         +
Sbjct: 239 VNLXVTVGNEYVVXGXFNQEXLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYL 298
Query: 316 IVIA-GVLPT----IEVLEQVANFGFN---IRH--AYGMTEVLGPAIVRQWKPEGESSAL 365
            V A G  P     +E L ++A    N   +RH   +G TE   P +             
Sbjct: 299 KVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGXTEAC-PXVT------------ 345
Query: 366 DHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLG-----EVMFRANTVMLGYFK 420
                 T     L+    QGV             DG+ LG     E++ R   +  GY+K
Sbjct: 346 ------TNPPLRLDKSTTQGVPXSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWK 399
Query: 421 NPKATEEAFRNGWY--------HTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEA 472
             K  +E +   WY         TGD+   + +G++  +DR K++I      I+  E+EA
Sbjct: 400 REKENQECW---WYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEA 456
Query: 473 VLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLK-EGR-EASPEELVTFCGDELPSCMVPRA 530
           +L  +  V + AV+GK D++  EVP AF+ LK E R +   E+++ +  + +      R 
Sbjct: 457 LLXKHEAVXDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKRVRE 516
Query: 531 I-FFEDIPVNSTGKVQKFVLRGK 552
           + F E++P  ++GK+ + +LR K
Sbjct: 517 VEFVEELPRTASGKLLRRLLREK 539

>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569

Iteration: 1
 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 122/508 (24%), Positives = 202/508 (39%), Gaps = 66/508 (12%)
Query: 67  ISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQ 126
           + RGD VA + P +P  + +      AG +      ++ S  +   L+  +AK I    +
Sbjct: 96  LQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDE 155
Query: 127 FVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKA 186
            ++ V    D ++      +  LLV+   CD               G L++  LL     
Sbjct: 156 VIQEV----DTVASECPSLRIKLLVSEKSCD---------------GWLNFKKLLNEAST 196
Query: 187 DFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLD 246
               ++   + +  ++ +TSG++G PK   +S+    L +        ++   + +WT+ 
Sbjct: 197 THHCVETGSQ-EASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDI-MWTIS 254
Query: 247 MFRCNGW----CCT----WAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNM 298
                GW     C+    WA+ A   +++ +      +I  ++  + +  + G P +  M
Sbjct: 255 ---DTGWILNILCSLMEPWALGACTFVHL-LPKFDPLVILKTLSSYPIKSMMGAPIVYRM 310
Query: 299 IANASASDQN--QLQRKVIIVIAGVLPTIEVLEQV-ANFGFNIRHAYGMTEVLGPAIVRQ 355
           +     S      LQ   + V   +LP  E LE   A  G +IR +YG TE     +V +
Sbjct: 311 LLQQDLSSYKFPHLQN-CVTVGESLLP--ETLENWRAQTGLDIRESYGQTETGLTCMVSK 367
Query: 356 WKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTV- 414
                            K + G         DV+  +   +V   G T G++  R   + 
Sbjct: 368 ---------------TMKIKPGYMGTAASCYDVQIIDDKGNVLPPG-TEGDIGIRVKPIR 411
Query: 415 ----MLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEV 470
                 GY  NP  T    R  ++  GD  +++ DGY Q   R  DII S    I   EV
Sbjct: 412 PIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEV 471
Query: 471 EAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKL-KEGREASPEELVTFCGDELPSCMV-- 527
           E  L+ +P V+E AV+   D    EV  AFV L  +     PE+L       + S     
Sbjct: 472 ENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPY 531
Query: 528 --PRAI-FFEDIPVNSTGKVQKFVLRGK 552
             PR I F  ++P   TGK+Q+  LR K
Sbjct: 532 KYPRKIEFVLNLPKTVTGKIQRAKLRDK 559

>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570

Iteration: 1
 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 122/508 (24%), Positives = 202/508 (39%), Gaps = 66/508 (12%)
Query: 67  ISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQ 126
           + RGD VA + P +P  + +      AG +      ++ S  +   L+  +AK I    +
Sbjct: 96  LQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDE 155
Query: 127 FVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKA 186
            ++ V    D ++      +  LLV+   CD               G L++  LL     
Sbjct: 156 VIQEV----DTVASECPSLRIKLLVSEKSCD---------------GWLNFKKLLNEAST 196
Query: 187 DFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLD 246
               ++   + +  ++ +TSG++G PK   +S+    L +        ++   + +WT+ 
Sbjct: 197 THHCVETGSQ-EASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDI-MWTIS 254
Query: 247 MFRCNGW----CCT----WAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNM 298
                GW     C+    WA+ A   +++ +      +I  ++  + +  + G P +  M
Sbjct: 255 ---DTGWILNILCSLMEPWALGACTFVHL-LPKFDPLVILKTLSSYPIKSMMGAPIVYRM 310
Query: 299 IANASASDQN--QLQRKVIIVIAGVLPTIEVLEQV-ANFGFNIRHAYGMTEVLGPAIVRQ 355
           +     S      LQ   + V   +LP  E LE   A  G +IR +YG TE     +V +
Sbjct: 311 LLQQDLSSYKFPHLQN-CVTVGESLLP--ETLENWRAQTGLDIRESYGQTETGLTCMVSK 367
Query: 356 WKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTV- 414
                            K + G         DV+  +   +V   G T G++  R   + 
Sbjct: 368 ---------------TMKIKPGYMGTAASCYDVQIIDDKGNVLPPG-TEGDIGIRVKPIR 411
Query: 415 ----MLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEV 470
                 GY  NP  T    R  ++  GD  +++ DGY Q   R  DII S    I   EV
Sbjct: 412 PIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEV 471
Query: 471 EAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKL-KEGREASPEELVTFCGDELPSCMV-- 527
           E  L+ +P V+E AV+   D    EV  AFV L  +     PE+L       + S     
Sbjct: 472 ENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPY 531
Query: 528 --PRAI-FFEDIPVNSTGKVQKFVLRGK 552
             PR I F  ++P   TGK+Q+  LR K
Sbjct: 532 KYPRKIEFVLNLPKTVTGKIQRAKLRDK 559

>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 106/419 (25%), Positives = 171/419 (40%), Gaps = 60/419 (14%)
Query: 44  VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTR 103
           VR ++ Q + +  + A  L  L I++GD VA + PN      L +     GAV   +NTR
Sbjct: 28  VRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTR 87
Query: 104 LDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPST 163
           L +  ++ IL    +K++                    +    AP++  I       P T
Sbjct: 88  LAAPEVSFILSDSGSKVVI-------------------YGAPSAPVIDAI-RAQADPPGT 127
Query: 164 CSVANNFPSGSLDYNDLLEMGKADFEMMQPNHEC---DPISVNYTSGSTGDPKGVVYSHR 220
             V +   + SL   + L    AD    +P  EC   D + + YTSG+TG PKGVV++H 
Sbjct: 128 --VTDWIGADSL--AERLRSAAAD----EPAVECGGDDNLFIMYTSGTTGHPKGVVHTHE 179
Query: 221 GAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCIRTVSAKIIFDS 280
             +  + +  S  DVR     L  L MF           A  G   + +    A  ++  
Sbjct: 180 SVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSL 239
Query: 281 ILIHKVTHLCGQPRILNMI------ANASASDQNQLQRKVIIVIAGVLPTIEVLEQV-AN 333
           I+  +V      P ILN +      A   A D           I G  P  E L ++ A 
Sbjct: 240 IVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYF-------ITGGAPMPEALIKIYAA 292
Query: 334 FGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNT 393
               +   Y +TE  G   +           L  E  + K        +   V V+  + 
Sbjct: 293 KNIEVVQGYALTESCGGGTL-----------LLSEDALRKAGSAGRATMFTDVAVRGDDG 341
Query: 394 MKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKD 452
           +  +   G+  GEV+ +++ ++  Y+  P+AT +AF NGW+ TGD+   + +GY+ +KD
Sbjct: 342 V--IREHGE--GEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKD 396

>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539

Iteration: 1
 Score = 96.3 bits (238), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 138/545 (25%), Positives = 221/545 (40%), Gaps = 57/545 (10%)
Query: 24  DFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPAL 83
           D L   A  YGD  +I  G   +S+R+      +LA+   +L I + D V    PNI   
Sbjct: 29  DLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEF 88
Query: 84  YKLHFAVPMAGA--VLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPN 141
           +++ FA+   GA  V +  + R    T      +  A II   Y   +    A  + S  
Sbjct: 89  FEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQS-- 146
Query: 142 HKCDKAPLLVTI---PECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECD 198
               K P L  I    E + + P              +   L E+  +D   +Q      
Sbjct: 147 ----KLPTLKNIIVAGEAEEFLP--------LEDLHTEPVKLPEVKSSDVAFLQ------ 188
Query: 199 PISVNYTSGSTGDPKGVVYSHRGAYLNSLAQ-ISRCDVRDMPVFLWTLDMFRCNGWCCTW 257
                 + GSTG  K +  +H   Y+ SL + +  C +    V+L  L M          
Sbjct: 189 -----LSGGSTGLSKLIPRTHDD-YIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPG 242
Query: 258 AMAAV--GGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVI 315
            +  +  GG  V   + S    F  I   KVT     P +  +  +A++S ++ L    +
Sbjct: 243 VLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQV 302
Query: 316 IVIAGVLPTIEVLEQV-ANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKH 374
           + + G   + E   +V A FG  ++  +GM E L              + LD   E+  +
Sbjct: 303 LQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLV-----------NYTRLDDPEEIIVN 351
Query: 375 REGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAF-RNGW 433
            +G          V   +     P  G+T G ++ R    + GY+K  +    +F  +G+
Sbjct: 352 TQGKPMSPYDESRVWDDHDRDVKP--GET-GHLLTRGPYTIRGYYKAEEHNAASFTEDGF 408
Query: 434 YHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQL 493
           Y TGD+     DGY+ ++ R KD I  G E +++ EVE  LL++P V +AA+V   D  L
Sbjct: 409 YRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFL 468
Query: 494 KEVPVAFVKLKEGREASPE--ELVTFCGDE-LPSCMVP-RAIFFEDIPVNSTGKVQKFVL 549
            E    F+     R+ +P+  EL  F  +  L +  +P R  F E  P    GKV K  L
Sbjct: 469 GERSCVFII---PRDEAPKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKAL 525
Query: 550 RGKVN 554
           R  ++
Sbjct: 526 REAIS 530

>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652

Iteration: 1
 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 139/581 (23%), Positives = 221/581 (38%), Gaps = 102/581 (17%)
Query: 26  LERAAHVYGDATSIIY------GTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPN 79
           L+R     GD T+II+       +   S+R+ H+   + A+ L  L I +GD+VA   P 
Sbjct: 82  LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 80  IPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVE------VVQN 133
           +P       A    GAV S +        +A  +    ++++    + V       + +N
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKN 201
Query: 134 ALDIL-SPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQ 192
             D L +PN         VT  E       T S  +      L + DL+E    + +   
Sbjct: 202 VDDALKNPN---------VTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEA 252
Query: 193 PNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNG 252
            N E DP+ + YTSGSTG PKGV+++  G YL          V     F +  D    + 
Sbjct: 253 MNAE-DPLFILYTSGSTGKPKGVLHT-TGGYL----------VYAATTFKYVFDYHPGDI 300
Query: 253 WCCTWAMAAVGGINVCIRTVSA----KIIFDSIL-------------IHKVTHLCGQPRI 295
           + CT  +  V G +  +    A     ++F+ +               H+V  L   P  
Sbjct: 301 YWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTA 360
Query: 296 LNMIANASASDQNQLQRKVIIVIAGV--------------------LPTIEVLEQVANFG 335
           +  +            R  + ++  V                     P ++   Q    G
Sbjct: 361 IRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGG 420
Query: 336 FNIRHAYGMTEVLGPAIVRQWKPEGESSAL-DHE-HEMTKHREGLNNLLIQGVDVKQQNT 393
           F I    G  E+   +  R +   G   AL D+E H      EG  NL+I          
Sbjct: 421 FMITPLPGAIELKAGSATRPFF--GVQPALVDNEGHPQEGATEG--NLVI---------- 466
Query: 394 MKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDR 453
             S P   +TL     R        FKN            Y +GD A R+ DGY  +  R
Sbjct: 467 TDSWPGQARTLFGDHERFEQTYFSTFKNM-----------YFSGDGARRDEDGYYWITGR 515
Query: 454 RKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPE- 512
             D++      + + E+E+ L+++PK+ EAAVVG       +   A+V L  G E SPE 
Sbjct: 516 VDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPEL 575
Query: 513 --ELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLR 550
             E+  +   E+     P  + + D +P   +GK+ + +LR
Sbjct: 576 YAEVRNWVAKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616

>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652

Iteration: 1
 Score = 95.9 bits (237), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 139/581 (23%), Positives = 221/581 (38%), Gaps = 102/581 (17%)
Query: 26  LERAAHVYGDATSIIY------GTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPN 79
           L+R     GD T+II+       +   S+R+ H+   + A+ L  L I +GD+VA   P 
Sbjct: 82  LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 80  IPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVE------VVQN 133
           +P       A    GAV S +        +A  +    ++++    + V       + +N
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKN 201
Query: 134 ALDIL-SPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQ 192
             D L +PN         VT  E       T S  +      L + DL+E    + +   
Sbjct: 202 VDDALKNPN---------VTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEA 252
Query: 193 PNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNG 252
            N E DP+ + YTSGSTG PKGV+++  G YL          V     F +  D    + 
Sbjct: 253 MNAE-DPLFILYTSGSTGKPKGVLHT-TGGYL----------VYAATTFKYVFDYHPGDI 300
Query: 253 WCCTWAMAAVGGINVCIRTVSA----KIIFDSIL-------------IHKVTHLCGQPRI 295
           + CT  +  V G +  +    A     ++F+ +               H+V  L   P  
Sbjct: 301 YWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTA 360
Query: 296 LNMIANASASDQNQLQRKVIIVIAGV--------------------LPTIEVLEQVANFG 335
           +  +            R  + ++  V                     P ++   Q    G
Sbjct: 361 IRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGG 420
Query: 336 FNIRHAYGMTEVLGPAIVRQWKPEGESSAL-DHE-HEMTKHREGLNNLLIQGVDVKQQNT 393
           F I    G  E+   +  R +   G   AL D+E H      EG  NL+I          
Sbjct: 421 FMITPLPGAIELKAGSATRPFF--GVQPALVDNEGHPQEGATEG--NLVI---------- 466
Query: 394 MKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDR 453
             S P   +TL     R        FKN            Y +GD A R+ DGY  +  R
Sbjct: 467 TDSWPGQARTLFGDHERFEQTYFSTFKNM-----------YFSGDGARRDEDGYYWITGR 515
Query: 454 RKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPE- 512
             D++      + + E+E+ L+++PK+ EAAVVG       +   A+V L  G E SPE 
Sbjct: 516 VDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPEL 575
Query: 513 --ELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLR 550
             E+  +   E+     P  + + D +P   +GK+ + +LR
Sbjct: 576 YAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616

>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652

Iteration: 1
 Score = 95.5 bits (236), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 139/581 (23%), Positives = 221/581 (38%), Gaps = 102/581 (17%)
Query: 26  LERAAHVYGDATSIIY------GTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPN 79
           L+R     GD T+II+       +   S+R+ H+   + A+ L  L I +GD+VA   P 
Sbjct: 82  LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 80  IPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVE------VVQN 133
           +P       A    GAV S +        +A  +    ++++    + V       + +N
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKN 201
Query: 134 ALDIL-SPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQ 192
             D L +PN         VT  E       T S  +      L + DL+E    + +   
Sbjct: 202 VDDALKNPN---------VTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEA 252
Query: 193 PNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNG 252
            N E DP+ + YTSGSTG PKGV+++  G YL          V     F +  D    + 
Sbjct: 253 MNAE-DPLFILYTSGSTGKPKGVLHT-TGGYL----------VYAATTFKYVFDYHPGDI 300
Query: 253 WCCTWAMAAVGGINVCIRTVSA----KIIFDSIL-------------IHKVTHLCGQPRI 295
           + CT  +  V G +  +    A     ++F+ +               H+V  L   P  
Sbjct: 301 YWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTA 360
Query: 296 LNMIANASASDQNQLQRKVIIVIAGV--------------------LPTIEVLEQVANFG 335
           +  +            R  + ++  V                     P ++   Q    G
Sbjct: 361 IRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGG 420
Query: 336 FNIRHAYGMTEVLGPAIVRQWKPEGESSAL-DHE-HEMTKHREGLNNLLIQGVDVKQQNT 393
           F I    G  E+   +  R +   G   AL D+E H      EG  NL+I          
Sbjct: 421 FMITPLPGAIELKAGSATRPFF--GVQPALVDNEGHPQEGATEG--NLVI---------- 466
Query: 394 MKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDR 453
             S P   +TL     R        FKN            Y +GD A R+ DGY  +  R
Sbjct: 467 TDSWPGQARTLFGDHERFEQTYFSTFKNM-----------YFSGDGARRDEDGYYWITGR 515
Query: 454 RKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPE- 512
             D++      + + E+E+ L+++PK+ EAAVVG       +   A+V L  G E SPE 
Sbjct: 516 VDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPEL 575
Query: 513 --ELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLR 550
             E+  +   E+     P  + + D +P   +GK+ + +LR
Sbjct: 576 YAEVRNWVEKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616

>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652

Iteration: 1
 Score = 95.1 bits (235), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 139/581 (23%), Positives = 221/581 (38%), Gaps = 102/581 (17%)
Query: 26  LERAAHVYGDATSIIY------GTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPN 79
           L+R     GD T+II+       +   S+R+ H+   + A+ L  L I +GD+VA   P 
Sbjct: 82  LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 80  IPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVE------VVQN 133
           +P       A    GAV S +        +A  +    ++++    + V       + +N
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKN 201
Query: 134 ALDIL-SPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQ 192
             D L +PN         VT  E       T S  +      L + DL+E    + +   
Sbjct: 202 VDDALKNPN---------VTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEA 252
Query: 193 PNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNG 252
            N E DP+ + YTSGSTG PKGV+++  G YL          V     F +  D    + 
Sbjct: 253 MNAE-DPLFILYTSGSTGKPKGVLHT-TGGYL----------VYAATTFKYVFDYHPGDI 300
Query: 253 WCCTWAMAAVGGINVCIRTVSA----KIIFDSIL-------------IHKVTHLCGQPRI 295
           + CT  +  V G +  +    A     ++F+ +               H+V  L   P  
Sbjct: 301 YWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTA 360
Query: 296 LNMIANASASDQNQLQRKVIIVIAGV--------------------LPTIEVLEQVANFG 335
           +  +            R  + ++  V                     P ++   Q    G
Sbjct: 361 IRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGG 420
Query: 336 FNIRHAYGMTEVLGPAIVRQWKPEGESSAL-DHE-HEMTKHREGLNNLLIQGVDVKQQNT 393
           F I    G  E+   +  R +   G   AL D+E H      EG  NL+I          
Sbjct: 421 FMITPLPGAIELKAGSATRPFF--GVQPALVDNEGHPQEGATEG--NLVI---------- 466
Query: 394 MKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDR 453
             S P   +TL     R        FKN            Y +GD A R+ DGY  +  R
Sbjct: 467 TDSWPGQARTLFGDHERFEQTYFSTFKNM-----------YFSGDGARRDEDGYYWITGR 515
Query: 454 RKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPE- 512
             D++      + + E+E+ L+++PK+ EAAVVG       +   A+V L  G E SPE 
Sbjct: 516 VDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPEL 575
Query: 513 --ELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLR 550
             E+  +   E+     P  + + D +P   +GK+ + +LR
Sbjct: 576 YAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616

>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652

Iteration: 1
 Score = 95.1 bits (235), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 139/581 (23%), Positives = 221/581 (38%), Gaps = 102/581 (17%)
Query: 26  LERAAHVYGDATSIIY------GTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPN 79
           L+R     GD T+II+       +   S+R+ H+   + A+ L  L I +GD+VA   P 
Sbjct: 82  LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 80  IPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVE------VVQN 133
           +P       A    GAV S +        +A  +    ++++    + V       + +N
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGASIPLKKN 201
Query: 134 ALDIL-SPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQ 192
             D L +PN         VT  E       T S  +      L + DL+E    + +   
Sbjct: 202 VDDALKNPN---------VTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEA 252
Query: 193 PNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNG 252
            N E DP+ + YTSGSTG PKGV+++  G YL          V     F +  D    + 
Sbjct: 253 MNAE-DPLFILYTSGSTGKPKGVLHT-TGGYL----------VYAATTFKYVFDYHPGDI 300
Query: 253 WCCTWAMAAVGGINVCIRTVSA----KIIFDSIL-------------IHKVTHLCGQPRI 295
           + CT  +  V G +  +    A     ++F+ +               H+V  L   P  
Sbjct: 301 YWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTA 360
Query: 296 LNMIANASASDQNQLQRKVIIVIAGV--------------------LPTIEVLEQVANFG 335
           +  +            R  + ++  V                     P ++   Q    G
Sbjct: 361 IRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGG 420
Query: 336 FNIRHAYGMTEVLGPAIVRQWKPEGESSAL-DHE-HEMTKHREGLNNLLIQGVDVKQQNT 393
           F I    G  E+   +  R +   G   AL D+E H      EG  NL+I          
Sbjct: 421 FMITPLPGAIELKAGSATRPFF--GVQPALVDNEGHPQEGATEG--NLVI---------- 466
Query: 394 MKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDR 453
             S P   +TL     R        FKN            Y +GD A R+ DGY  +  R
Sbjct: 467 TDSWPGQARTLFGDHERFEQTYFSTFKNM-----------YFSGDGARRDEDGYYWITGR 515
Query: 454 RKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPE- 512
             D++      + + E+E+ L+++PK+ EAAVVG       +   A+V L  G E SPE 
Sbjct: 516 VDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPEL 575
Query: 513 --ELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLR 550
             E+  +   E+     P  + + D +P   +GK+ + +LR
Sbjct: 576 YAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616

>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652

Iteration: 1
 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 138/581 (23%), Positives = 220/581 (37%), Gaps = 102/581 (17%)
Query: 26  LERAAHVYGDATSIIY------GTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPN 79
           L+R     GD T+II+       +   S+R+ H+   + A+ L  L I +GD+VA   P 
Sbjct: 82  LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 80  IPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVE------VVQN 133
           +P       A    GAV S +        +A  +    ++++    + V       + +N
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKN 201
Query: 134 ALDIL-SPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQ 192
             D L +PN         VT  E       T S  +      L + DL+E    + +   
Sbjct: 202 VDDALKNPN---------VTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEA 252
Query: 193 PNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNG 252
            N E DP+ + YTSGSTG PKGV+++  G YL          V     F +  D    + 
Sbjct: 253 MNAE-DPLFILYTSGSTGKPKGVLHT-TGGYL----------VYAATTFKYVFDYHPGDI 300
Query: 253 WCCTWAMAAVGGINVCIRTVSA----KIIFDSIL-------------IHKVTHLCGQPRI 295
           + CT  +  V G +  +    A     ++F+ +               H+V  L   P  
Sbjct: 301 YWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTA 360
Query: 296 LNMIANASASDQNQLQRKVIIVIAGV--------------------LPTIEVLEQVANFG 335
           +  +            R  + ++                        P ++   Q    G
Sbjct: 361 IRALMAEGDKAIEGTDRSSLRILGSAGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGG 420
Query: 336 FNIRHAYGMTEVLGPAIVRQWKPEGESSAL-DHE-HEMTKHREGLNNLLIQGVDVKQQNT 393
           F I    G  E+   +  R +   G   AL D+E H      EG  NL+I          
Sbjct: 421 FMITPLPGAIELKAGSATRPFF--GVQPALVDNEGHPQEGATEG--NLVI---------- 466
Query: 394 MKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDR 453
             S P   +TL     R        FKN            Y +GD A R+ DGY  +  R
Sbjct: 467 TDSWPGQARTLFGDHERFEQTYFSTFKNM-----------YFSGDGARRDEDGYYWITGR 515
Query: 454 RKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPE- 512
             D++      + + E+E+ L+++PK+ EAAVVG       +   A+V L  G E SPE 
Sbjct: 516 VDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPEL 575
Query: 513 --ELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLR 550
             E+  +   E+     P  + + D +P   +GK+ + +LR
Sbjct: 576 YAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 158/364 (43%), Gaps = 43/364 (11%)
Query: 205 TSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVF----------LWTLDMFRCNGWC 254
           +SGSTG PKGV  +H     N + + S    RD P++          L  +      G  
Sbjct: 200 SSGSTGLPKGVQLTHE----NIVTRFSHA--RD-PIYGNQVSPGTAVLTVVPFHHGFGMF 252
Query: 255 CTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKV 314
            T      G   V +     +    ++  +K T++   P +  ++  +   ++  L   V
Sbjct: 253 TTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTNVILVPTLFAILNKSELLNKYDLSNLV 312
Query: 315 IIVIAGVLPTIEVLEQVANFGFN---IRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEM 371
            I   G   + EV E VA   FN   +R  YG+TE     I+    PEG+          
Sbjct: 313 EIASGGAPLSKEVGEAVARR-FNLPGVRQGYGLTETTSAIII---TPEGDD--------- 359
Query: 372 TKHREGLNNLLIQGVDVK--QQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAF 429
              + G +  ++     K    +T KS+  + +  GEV  +   +M GY  NP+AT+E  
Sbjct: 360 ---KPGASGKVVPLFKAKVIDLDTKKSLGPNRR--GEVCVKGPMLMKGYVNNPEATKELI 414
Query: 430 -RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGK 488
              GW HTGD+   + + +  + DR K +I      +   E+E+VLL +P + +A V G 
Sbjct: 415 DEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGV 474
Query: 489 VDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRA--IFFEDIPVNSTGKVQK 546
            D    E+P A V L+ G+  + +E++ +   ++ +    R    F +++P   TGK+  
Sbjct: 475 PDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDG 534
Query: 547 FVLR 550
             +R
Sbjct: 535 RAIR 538

>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 138/581 (23%), Positives = 220/581 (37%), Gaps = 102/581 (17%)
Query: 26  LERAAHVYGDATSIIY------GTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPN 79
           L+R     GD T+II+       +   S+R+ H+   + A+ L  L I +GD+VA   P 
Sbjct: 82  LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 80  IPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVE------VVQN 133
           +P       A    GAV S +        +A  +    ++++    + V       + +N
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKN 201
Query: 134 ALDIL-SPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQ 192
             D L +PN         VT  E       T S  +      L + DL+E    + +   
Sbjct: 202 VDDALKNPN---------VTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEA 252
Query: 193 PNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNG 252
            N E DP+ + YTSGSTG PKGV+++  G YL          V     F +  D    + 
Sbjct: 253 MNAE-DPLFILYTSGSTGKPKGVLHT-TGGYL----------VYAATTFKYVFDYHPGDI 300
Query: 253 WCCTWAMAAVGGINVCIRTVSA----KIIFDSIL-------------IHKVTHLCGQPRI 295
           + CT  +  V G +  +    A     ++F+ +               H+V  L   P  
Sbjct: 301 YWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTA 360
Query: 296 LNMIANASASDQNQLQRKVIIVIAGV--------------------LPTIEVLEQVANFG 335
           +  +            R  + ++  V                     P ++   Q    G
Sbjct: 361 IRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGG 420
Query: 336 FNIRHAYGMTEVLGPAIVRQWKPEGESSAL-DHE-HEMTKHREGLNNLLIQGVDVKQQNT 393
           F I    G  E+   +  R +   G   AL D+E H      EG  NL+I          
Sbjct: 421 FMITPLPGAIELKAGSATRPFF--GVQPALVDNEGHPQEGATEG--NLVI---------- 466
Query: 394 MKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDR 453
             S P   +TL     R        FKN            Y +GD A R+ DGY  +  R
Sbjct: 467 TDSWPGQARTLFGDHERFEQTYFSTFKNM-----------YFSGDGARRDEDGYYWITGR 515
Query: 454 RKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPE- 512
             D++      + + E+E+ L+++PK+ EAAVVG       +   A+V L  G E SPE 
Sbjct: 516 VDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPEL 575
Query: 513 --ELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLR 550
             E+  +   E+     P  + + D +P   +G + + +LR
Sbjct: 576 YAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGAIMRRILR 616

>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539

Iteration: 1
 Score = 92.8 bits (229), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 136/545 (24%), Positives = 218/545 (40%), Gaps = 57/545 (10%)
Query: 24  DFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPAL 83
           D L   A  YGD  +I  G   +S+R+      +LA+   +L I + D V    PNI   
Sbjct: 29  DLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEF 88
Query: 84  YKLHFAVPMAGA--VLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPN 141
           +++ FA+   GA  V +  + R    T      +  A II   Y   +    A  + S  
Sbjct: 89  FEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQS-- 146
Query: 142 HKCDKAPLLVTI---PECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECD 198
               K P L  I    E + + P              +   L E+  +D   +Q      
Sbjct: 147 ----KLPTLKNIIVAGEAEEFLP--------LEDLHTEPVKLPEVKSSDVAFLQ------ 188
Query: 199 PISVNYTSGSTGDPKGVVYSHRGAYLNSLAQ-ISRCDVRDMPVFLWTLDMFRCNGWCCTW 257
                 + GSTG  K +  +H   Y+ SL + +  C +    V+L  L            
Sbjct: 189 -----LSGGSTGLSKLIPRTHDD-YIYSLKRSVEVCWLDHSTVYLAALPXAHNYPLSSPG 242
Query: 258 AMAAV--GGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVI 315
            +  +  GG  V   + S    F  I   KVT     P +  +  +A++S ++ L    +
Sbjct: 243 VLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAXVWXDAASSRRDDLSSLQV 302
Query: 316 IVIAGVLPTIEVLEQV-ANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKH 374
           + + G   + E   +V A FG  ++  +G  E L              + LD   E+  +
Sbjct: 303 LQVGGAKFSAEAARRVKAVFGCTLQQVFGXAEGLV-----------NYTRLDDPEEIIVN 351
Query: 375 REGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAF-RNGW 433
            +G          V   +     P  G+T G ++ R    + GY+K  +    +F  +G+
Sbjct: 352 TQGKPXSPYDESRVWDDHDRDVKP--GET-GHLLTRGPYTIRGYYKAEEHNAASFTEDGF 408
Query: 434 YHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQL 493
           Y TGD+     DGY+ ++ R KD I  G E +++ EVE  LL++P V +AA V   D  L
Sbjct: 409 YRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAXVSXPDQFL 468
Query: 494 KEVPVAFVKLKEGREASPE--ELVTFCGDE-LPSCMVP-RAIFFEDIPVNSTGKVQKFVL 549
            E    F+     R+ +P+  EL  F  +  L +  +P R  F E  P    GKV K  L
Sbjct: 469 GERSCVFII---PRDEAPKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKAL 525
Query: 550 RGKVN 554
           R  ++
Sbjct: 526 REAIS 530

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score = 92.4 bits (228), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 157/364 (43%), Gaps = 43/364 (11%)
Query: 205 TSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVF----------LWTLDMFRCNGWC 254
           +SGSTG PKGV  +H     N + + S    RD P++          L  +      G  
Sbjct: 200 SSGSTGLPKGVQLTHE----NIVTRFSHA--RD-PIYGNQVSPGTAVLTVVPFHHGFGMF 252
Query: 255 CTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKV 314
            T      G   V +     +    ++  +K T +   P +  ++  +   ++  L   V
Sbjct: 253 TTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLV 312
Query: 315 IIVIAGVLPTIEVLEQVANFGFN---IRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEM 371
            I   G   + EV E VA   FN   +R  YG+TE     I+    PEG+          
Sbjct: 313 EIASGGAPLSKEVGEAVARR-FNLPGVRQGYGLTETTSAIII---TPEGDD--------- 359
Query: 372 TKHREGLNNLLIQGVDVK--QQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAF 429
              + G +  ++     K    +T KS+  + +  GEV  +   +M GY  NP+AT+E  
Sbjct: 360 ---KPGASGKVVPLFKAKVIDLDTKKSLGPNRR--GEVCVKGPMLMKGYVNNPEATKELI 414
Query: 430 -RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGK 488
              GW HTGD+   + + +  + DR K +I      +   E+E+VLL +P + +A V G 
Sbjct: 415 DEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGV 474
Query: 489 VDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRA--IFFEDIPVNSTGKVQK 546
            D    E+P A V L+ G+  + +E++ +   ++ +    R    F +++P   TGK+  
Sbjct: 475 PDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDG 534
Query: 547 FVLR 550
             +R
Sbjct: 535 RAIR 538

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 92.4 bits (228), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 157/364 (43%), Gaps = 43/364 (11%)
Query: 205 TSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVF----------LWTLDMFRCNGWC 254
           +SGSTG PKGV  +H     N + + S    RD P++          L  +      G  
Sbjct: 200 SSGSTGLPKGVQLTHE----NIVTRFSHA--RD-PIYGNQVSPGTAVLTVVPFHHGFGMF 252
Query: 255 CTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKV 314
            T      G   V +     +    ++  +K T +   P +  ++  +   ++  L   V
Sbjct: 253 TTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLV 312
Query: 315 IIVIAGVLPTIEVLEQVANFGFN---IRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEM 371
            I   G   + EV E VA   FN   +R  YG+TE     I+    PEG+          
Sbjct: 313 EIASGGAPLSKEVGEAVARR-FNLPGVRQGYGLTETTSAIII---TPEGDD--------- 359
Query: 372 TKHREGLNNLLIQGVDVK--QQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAF 429
              + G +  ++     K    +T KS+  + +  GEV  +   +M GY  NP+AT+E  
Sbjct: 360 ---KPGASGKVVPLFKAKVIDLDTKKSLGPNRR--GEVCVKGPMLMKGYVNNPEATKELI 414
Query: 430 -RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGK 488
              GW HTGD+   + + +  + DR K +I      +   E+E+VLL +P + +A V G 
Sbjct: 415 DEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGV 474
Query: 489 VDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRA--IFFEDIPVNSTGKVQK 546
            D    E+P A V L+ G+  + +E++ +   ++ +    R    F +++P   TGK+  
Sbjct: 475 PDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDG 534
Query: 547 FVLR 550
             +R
Sbjct: 535 RAIR 538

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 149/364 (40%), Gaps = 32/364 (8%)
Query: 198 DPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNG-WCCT 256
           D  ++ YTSG+TG   G + SH     NSL  +         V +  L ++  +G +  +
Sbjct: 156 DLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVAS 215
Query: 257 WAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVII 316
                  G  + +       I D  L+ + T L G P     +   S     +    + +
Sbjct: 216 NVTLFARGSMIFLPXFDPDXILD--LMARATVLMGVPTFYTRLLQ-SPRLTXETTGHMRL 272
Query: 317 VIAGVLPTIEVL--EQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKH 374
            I+G  P +     E  A  G  +   YGMTE                + ++  +     
Sbjct: 273 FISGSAPLLADTHREWSAXTGHAVLERYGMTE----------------TNMNTSNPYDGD 316
Query: 375 R-EGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRN-G 432
           R  G     + GV  +  +           +G +      V  GY++ P+ T   FR+ G
Sbjct: 317 RVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDG 376
Query: 433 WYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQ 492
           ++ TGDL   +  GYV +  R  D++I+G   +   E+E+ + + P V+E+AV+G     
Sbjct: 377 FFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHAD 436
Query: 493 LKEVPVAFVKLKEGREASP-----EELVTFCGDELPSCMVP-RAIFFEDIPVNSTGKVQK 546
             E   AFV L   RE +P     EEL  F  D L    +P   IF +D+P N+ G VQ 
Sbjct: 437 FGEGVTAFVVLX--REFAPSEILAEELXAFVXDRLAXFXMPXXVIFVDDLPRNTMGAVQX 494
Query: 547 FVLR 550
            VLR
Sbjct: 495 NVLR 498

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 88.6 bits (218), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 118/500 (23%), Positives = 190/500 (38%), Gaps = 50/500 (10%)
Query: 57  KLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQL 116
           ++A+ L    +  GD VAA          L+ A   AG V   LNT      L   +   
Sbjct: 40  RVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDA 99
Query: 117 EAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLD 176
           E KI+  D               P+ +   A +   +           +V    P G   
Sbjct: 100 EPKIVVCD---------------PSKRDGIAAIAAKV---------GATVETLGPDGRGS 135
Query: 177 YNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVR 236
             D        F  +    + D  ++ YTSG+TG  KG   SH     NSL  +      
Sbjct: 136 LTDAAAGASEAFATIDRGAD-DLAAILYTSGTTGRSKGAXLSHDNLASNSLTLVDYWRFT 194
Query: 237 DMPVFLWTLDMFRCNG-WCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRI 295
              V +  L ++  +G +  +       G  + +       I D  L  + T L G P  
Sbjct: 195 PDDVLIHALPIYHTHGLFVASNVTLFARGSXIFLPKFDPDKILD--LXARATVLXGVPTF 252
Query: 296 LN-MIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVR 354
              ++ +   + +     ++ I  +  L      E  A  G  +   YG TE        
Sbjct: 253 YTRLLQSPRLTKETTGHXRLFISGSAPLLADTHREWSAKTGHAVLERYGXTET------- 305
Query: 355 QWKPEGESSALDHEHEMTKHREGLNNLLIQGVD--VKQQNTMKSVPHDGKTLGEVMFRAN 412
                  S+  D +        G     + GV   V    T K +P     +G +  +  
Sbjct: 306 ---NXNTSNPYDGDRV-----PGAVGPALPGVSARVTDPETGKELPR--GDIGXIEVKGP 355
Query: 413 TVMLGYFKNPKATEEAFRN-GWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVE 471
            V  GY++ P+ T+  FR+ G++ TGDL   +  GYV +  R KD++I+G   +   E+E
Sbjct: 356 NVFKGYWRXPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIE 415
Query: 472 AVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVP-RA 530
           + + + P V+E+AV+G       E   A V   +G      +++     +L     P + 
Sbjct: 416 SEIDAXPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQLAKFKXPKKV 475
Query: 531 IFFEDIPVNSTGKVQKFVLR 550
           IF +D+P N+ GKVQK VLR
Sbjct: 476 IFVDDLPRNTXGKVQKNVLR 495

>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 126/539 (23%), Positives = 206/539 (38%), Gaps = 69/539 (12%)
Query: 53  QICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASI 112
           ++C         + + +GD VA   P +P       A+   GA+ S +     S +L   
Sbjct: 122 EVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDR 181
Query: 113 LRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHY----QPSTCSVAN 168
           +   ++K++       +       ++      D A  L   P   H     + +  SVA 
Sbjct: 182 INDGDSKVVIT----TDESNRGGKVIETKRIVDDA--LRETPGVRHVLVYRKTNNPSVAF 235
Query: 169 NFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLA 228
           + P   LD+    +  K  +     + E DP+ + YTSGSTG PKGV +S  G  L +L 
Sbjct: 236 HAPR-DLDWATEKKKYKTYYPCTPVDSE-DPLFLLYTSGSTGAPKGVQHSTAGYLLGALL 293
Query: 229 QISRC-DVRDMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCIRTV---------SAKIIF 278
            +    D     VF    D+    GW         G +     T+         +    +
Sbjct: 294 TMRYTFDTHQEDVFFTAGDI----GWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYW 349
Query: 279 DSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTI--EVLEQVANFGF 336
           D I  HKVT     P  L ++  A  S       K +  +  V   I  EV E  +    
Sbjct: 350 DIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSE--- 406
Query: 337 NIRHAYGMTEVLGPAIVRQWKPEGESSALDH-EHEMTKHREGLNNLLIQGVDV------- 388
                 G  E+  P +   W+ E  S  +      +T  + G  +    G+D        
Sbjct: 407 ----KIGKNEI--PIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNT 460
Query: 389 -KQQNT-----MKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVR 442
            ++ NT     + +V     +    +++ +   L  + NP         G+Y TGD A +
Sbjct: 461 GEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYP-------GYYFTGDGAAK 513
Query: 443 NPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVK 502
           + DGY+ +  R  D++      +S+ E+EA ++ +P V E AVVG  DD   +   AFV 
Sbjct: 514 DKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVV 573
Query: 503 LKEGRE---ASPEEL--------VTFCGDELPSCMVPRAIFFEDIPVNSTGKVQKFVLR 550
           LK       A+ +EL         T   D  P       I  +D+P   +GK+ + +LR
Sbjct: 574 LKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILR 632

>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 103/418 (24%), Positives = 162/418 (38%), Gaps = 41/418 (9%)
Query: 155 ECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHEC-----DPISVNYTSGST 209
           EC         V  +   G +D+   LE     FE  +P  E      D   V ++SG+ 
Sbjct: 180 ECGDIPLKKAKVGGDVLEGWIDFRKELEESSPIFE--RPTGEVSTKNEDICLVYFSSGTA 237
Query: 210 GDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWC-CTWAMAAVGGINVC 268
           G PK V + +     + L      +V D  +     D    +GW  C W       I  C
Sbjct: 238 GFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVAD----SGWGKCVWGKLYGQWIAGC 293
Query: 269 IRTV------SAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVL 322
              V       AK + +    + VT  C  P I   +     S  N    K  +V AG  
Sbjct: 294 AVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDLSHYNFSTLKYAVV-AGEP 352
Query: 323 PTIEVLEQVANF-GFNIRHAYGMTEVLGPAIVRQW---KPEGESSALDHEHEMTKHREGL 378
              EV  +   F G  +   +G TE +       W   KP                R+G 
Sbjct: 353 LNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWMEPKPGSIGKPTPGYKIELMDRDG- 411
Query: 379 NNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGD 438
                +  +V ++  +     +GK +G        + + Y K+P+ TEE + +G+YHTGD
Sbjct: 412 -----RLCEVGEEGEIVINTMEGKPVG--------LFVHYGKDPERTEETWHDGYYHTGD 458
Query: 439 LAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVD---DQLKE 495
           +A  + DGY+    R  DII +    +   EVE+ L+ +P VLE A+ G  D    Q+ +
Sbjct: 459 MAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIK 518
Query: 496 VPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAI-FFEDIPVNSTGKVQKFVLRGK 552
             +   K     ++   EL     +       PR I F  ++P   +GK+++  +R K
Sbjct: 519 ATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDK 576

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 147/361 (40%), Gaps = 29/361 (8%)
Query: 198 DPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNG-WCCT 256
           D  ++ YTSG+TG   G + SH     NSL  +         V +  L ++  +G +  +
Sbjct: 156 DLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVAS 215
Query: 257 WAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVII 316
                  G  + +       I D  L+ + T L G P     +   S     +    + +
Sbjct: 216 NVTLFARGSMIFLPXFDPDXILD--LMARATVLMGVPTFYTRLLQ-SPRLTXETTGHMRL 272
Query: 317 VIAGVLPTIEVL--EQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKH 374
            I+G  P +     E  A  G  +   YGMTE                + ++  +     
Sbjct: 273 FISGSAPLLADTHREWSAXTGHAVLERYGMTE----------------TNMNTSNPYDGD 316
Query: 375 R-EGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRN-G 432
           R  G     + GV  +  +           +G +      V  GY++ P+ T   FR+ G
Sbjct: 317 RVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDG 376
Query: 433 WYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQ 492
           ++ TGDL   +  GYV +  R  D++I+G   +   E+E+ + + P V+E+AV+G     
Sbjct: 377 FFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHAD 436
Query: 493 LKEVPVAFVKLKEGREASPEELVTFCG--DELPSCMVP-RAIFFEDIPVNSTGKVQKFVL 549
             E   AFV L   RE +P E     G   +L    +P   IF +D+P N+ G VQ  VL
Sbjct: 437 FGEGVTAFVVLX--REFAPSEAQVLHGLDGQLAXFXMPXXVIFVDDLPRNTMGAVQXNVL 494
Query: 550 R 550
           R
Sbjct: 495 R 495

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 85/359 (23%), Positives = 143/359 (39%), Gaps = 25/359 (6%)
Query: 198 DPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNG-WCCT 256
           D  ++ YTSG+TG   G + SH     NSL  +         V +  L ++  +G +  +
Sbjct: 156 DLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVAS 215
Query: 257 WAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVII 316
                  G  + +       I D  L+ + T L G P     +   S     +    + +
Sbjct: 216 NVTLFARGSMIFLPXFDPDXILD--LMARATVLMGVPTFYTRLLQ-SPRLTXETTGHMRL 272
Query: 317 VIAGVLPTIEVL--EQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKH 374
            I+G  P +     E  A  G  +   YGMTE                + ++  +     
Sbjct: 273 FISGSAPLLADTHREWSAXTGHAVLERYGMTE----------------TNMNTSNPYDGD 316
Query: 375 R-EGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRN-G 432
           R  G     + GV  +  +           +G +      V  GY++ P+ T   FR+ G
Sbjct: 317 RVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDG 376
Query: 433 WYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQ 492
           ++ TGDL   +  GYV +  R  D++I+G   +   E+E+ + + P V+E+AV+G     
Sbjct: 377 FFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHAD 436
Query: 493 LKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVP-RAIFFEDIPVNSTGKVQKFVLR 550
             E   A V    G      +++     +L    +P   IF +D+P N+ G VQ  VLR
Sbjct: 437 FGEGVTAVVVRDXGATIDEAQVLHGLDGQLAXFXMPXXVIFVDDLPRNTMGAVQXNVLR 495

>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 73/167 (43%), Gaps = 13/167 (7%)
Query: 398 PHDGKTLGEVMFRANTVMLGYFKNPKATEEAF---------RNGWYHTGDLAVRNPDGYV 448
           P     LGE+      +  GY   P  T E F             Y TGDLA R  DG +
Sbjct: 403 PAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVL 462
Query: 449 QMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGRE 508
           +   R  D +      +   EVEA L+ +P V +AAV+ + D +L +  +    + E  +
Sbjct: 463 EYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQ-DSRLGDKQLVAYVVAERAD 521
Query: 509 ASPE--ELVTFCGDELPSCMVP-RAIFFEDIPVNSTGKVQKFVLRGK 552
           A P+  EL     + LP+ MVP   +  +++P    GK+ +  L G 
Sbjct: 522 APPDAAELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGS 568

>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 90/379 (23%), Positives = 142/379 (37%), Gaps = 61/379 (16%)
Query: 193 PNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNG 252
           P+   D   V YTSG+TG+PKG +  H+G                    +  L +F  N 
Sbjct: 178 PSKSTDLAYVIYTSGTTGNPKGTMLEHKG--------------------ISNLKVFFENS 217
Query: 253 WCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQR 312
              T     +G         S   +F ++L     ++     IL    N     +  + +
Sbjct: 218 LNVT-EKDRIGQFASISFDASVWEMFMALLTGASLYI-----ILKDTINDFVKFEQYINQ 271
Query: 313 KVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPE---------GESS 363
           K I VI   LP   V+        +I+          P++V +WK +          E++
Sbjct: 272 KEITVIT--LPPTYVVHLDPERILSIQTLITAGSATSPSLVNKWKEKVTYINAYGPTETT 329
Query: 364 ALDHEHEMTKHREG--------LNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVM 415
                   TK   G        + N  I  VD   Q  +KSV       GE+      + 
Sbjct: 330 ICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQ--LKSVGE----AGELCIGGEGLA 383
Query: 416 LGYFKNPKATEEAFRNG-------WYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSL 468
            GY+K P+ T + F +         Y TGD A    DG ++   R  + +      +   
Sbjct: 384 RGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELE 443
Query: 469 EVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVP 528
           EVE++LL +  + E AV    D Q  E P         +    E+L  F  +ELP+ M+P
Sbjct: 444 EVESILLKHMYISETAVSVHKDHQ--EQPYLCAYFVSEKHIPLEQLRQFSSEELPTYMIP 501
Query: 529 RA-IFFEDIPVNSTGKVQK 546
              I  + +P+ S GK+ +
Sbjct: 502 SYFIQLDKMPLTSNGKIDR 520

>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 82/376 (21%), Positives = 146/376 (38%), Gaps = 42/376 (11%)
Query: 191 MQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQ-ISRCDVRDMPVFLWTLDMFR 249
           + PN   DP  + YTSG+TG PKG + +H  A +  L + +      D   FL ++  + 
Sbjct: 604 IDPN---DPAYIMYTSGTTGKPKGNITTH--ANIQGLVKHVDYMAFSDQDTFL-SVSNYA 657
Query: 250 CNGWCCTWAMAAVGGINVCI----RTVSAKIIFDSILIHKVTHLCGQPRILNMIANASAS 305
            + +   +  + +    + I      +  + + D IL   V  +     + N++ +A   
Sbjct: 658 FDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG-- 715
Query: 306 DQNQLQRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSAL 365
            ++ ++    I+  G   ++              H      ++GP  +       E +  
Sbjct: 716 -EDWMKGLRCILFGGERASVP-------------HVRKALRIMGPGKLINCYGPTEGTVF 761
Query: 366 DHEHEMTKHREGLNNLLI----QGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKN 421
              H +    + +++L I        V   N    +   G  +GE+      V  GY   
Sbjct: 762 ATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFG-AVGELCISGMGVSKGYVNR 820
Query: 422 PKATEEAFRNG-------WYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVL 474
              T+E F           Y TGDLA   PDG ++   R  D +      I   E+E  L
Sbjct: 821 ADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQL 880
Query: 475 LSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAI-FF 533
              P V +A VV    +       A+  L    + S E++      +LP+ MVP+   F 
Sbjct: 881 QEYPGVKDAVVVADRHESGDASINAY--LVNRTQLSAEDVKAHLKKQLPAYMVPQTFTFL 938
Query: 534 EDIPVNSTGKVQKFVL 549
           +++P+ + GKV K +L
Sbjct: 939 DELPLTTNGKVNKRLL 954

>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol) Ligase Subunit-1 From Streptococcus Pyogenes Length = 521

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 97/380 (25%), Positives = 150/380 (39%), Gaps = 49/380 (12%)
Query: 204 YTSGSTGDPKGVVYSHRG--AYLNSLAQISRCDVRDMPVFL----WTLDMFRCNGWCCTW 257
           +TSG+TG PKGV  SH    ++ N + + +  DV   P  L    ++ D+     W  T 
Sbjct: 152 FTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDL-SVMYWAPTL 210
Query: 258 AMAAVGGINVCIRTVSA--KIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVI 315
           A+   G +    + + A  K +F +I    V      P   +M   +    Q ++     
Sbjct: 211 ALG--GTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTH 268
Query: 316 IVIAGVLPTIEVLEQVANF--GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTK 373
               G   T+    ++        I +AYG TE    A V         SA++   EM  
Sbjct: 269 FYFDGEELTVSTARKLFERFPSAKIINAYGPTE----ATVAL-------SAIEITREMV- 316
Query: 374 HREGLNNLLIQGVDVKQQNTMKSVPHDGKTL-----GEVMFRANTVMLGYFKNPKATEEA 428
             +    L I     K  +    +  DGK L     GE++     V  GY  NP+ T EA
Sbjct: 317 --DNYTRLPIGYP--KPDSPTYIIDEDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEA 372
Query: 429 F----RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLE-VEAVLLSNPKVLEA 483
           F        YHTGD+     D  + +   R D  I  A     LE V   L  +P V  A
Sbjct: 373 FFTFKGQPAYHTGDIGSLTEDN-ILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASA 431
Query: 484 AVVGKVDDQLK-EVPVAFVKLKEG-REASPEEL------VTFCGDELPSCMVPRAIFFED 535
             V + + + K +  +A++ +K+G +E    EL           D + S M+P    + D
Sbjct: 432 VAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYRD 491
Query: 536 -IPVNSTGKVQKFVLRGKVN 554
            +P+   GK+    L  +VN
Sbjct: 492 SLPLTPNGKIDIKTLINEVN 511

>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With D-Alanine Adenylate Length = 512

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 97/382 (25%), Positives = 148/382 (38%), Gaps = 58/382 (15%)
Query: 204 YTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDM-----PVFL----WTLDMFRCNGWC 254
           YTSGSTG+PKGV  ++     N L   ++  V D       VFL    ++ D+   + + 
Sbjct: 151 YTSGSTGNPKGVQITY-----NCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYP 205
Query: 255 CTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNM-IANASASDQNQLQRK 313
                  +  I+  +     K +F S+    +      P    M +  AS S+      K
Sbjct: 206 SLVTGGTLWAIDKDM-IARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMK 264
Query: 314 VIIVIAGVLPTIEVLEQVANF-GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEM- 371
             +    VLP     + +  F    I + YG TE    A V           LD    + 
Sbjct: 265 TFLFCGEVLPNEVARKLIERFPKATIMNTYGPTE----ATVAVTGIHVTEEVLDQYKSLP 320
Query: 372 TKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFR- 430
             + +    LLI   D        ++  DG+  GE++    +V +GY  +P+ TE+AF  
Sbjct: 321 VGYCKSDCRLLIMKED-------GTIAPDGEK-GEIVIVGPSVSVGYLGSPELTEKAFTM 372
Query: 431 ---NGWYHTGDLAVRNPDGYVQ----MKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEA 483
                 Y TGD       GYV+      + R D  I        LE     L     +E 
Sbjct: 373 IDGERAYKTGDA------GYVENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEG 426
Query: 484 AVV-----GKVDDQLKEVPV----AFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFE 534
           AV+     G+  D L  V V    +F K  +   A  +EL     + LP+ M+PR   ++
Sbjct: 427 AVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKEL----NERLPNYMIPRKFMYQ 482
Query: 535 -DIPVNSTGKVQKFVLRGKVNA 555
             IP+   GKV +  L  +V A
Sbjct: 483 SSIPMTPNGKVDRKKLLSEVTA 504

>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And Magnesium Length = 512

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 97/382 (25%), Positives = 148/382 (38%), Gaps = 58/382 (15%)
Query: 204 YTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDM-----PVFL----WTLDMFRCNGWC 254
           YTSGSTG+PKGV  ++     N L   ++  V D       VFL    ++ D+   + + 
Sbjct: 151 YTSGSTGNPKGVQITY-----NCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYP 205
Query: 255 CTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNM-IANASASDQNQLQRK 313
                  +  I+  +     K +F S+    +      P    M +  AS S+      K
Sbjct: 206 SLVTGGTLWAIDKDM-IARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMK 264
Query: 314 VIIVIAGVLPTIEVLEQVANF-GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEM- 371
             +    VLP     + +  F    I + YG TE    A V           LD    + 
Sbjct: 265 TFLFCGEVLPNEVARKLIERFPKATIMNTYGPTE----ATVAVTGIHVTEEVLDQYKSLP 320
Query: 372 TKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFR- 430
             + +    LLI   D        ++  DG+  GE++    +V +GY  +P+ TE+AF  
Sbjct: 321 VGYCKSDCRLLIMKED-------GTIAPDGEK-GEIVIVGPSVSVGYLGSPELTEKAFTM 372
Query: 431 ---NGWYHTGDLAVRNPDGYVQ----MKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEA 483
                 Y TGD       GYV+      + R D  I        LE     L     +E 
Sbjct: 373 IDGERAYKTGDA------GYVENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEG 426
Query: 484 AVV-----GKVDDQLKEVPV----AFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFE 534
           AV+     G+  D L  V V    +F K  +   A  +EL     + LP+ M+PR   ++
Sbjct: 427 AVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKEL----NERLPNYMIPRKFMYQ 482
Query: 535 -DIPVNSTGKVQKFVLRGKVNA 555
             IP+   GKV +  L  +V A
Sbjct: 483 SSIPMTPNGKVDRKKLLSEVTA 504

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	562
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	0.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	1e-130
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	1e-129
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	1e-125
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	1e-111
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	1e-102
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	2e-98
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	2e-98
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	5e-97
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	2e-96
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	9e-90
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	2e-89
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	2e-89
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	1e-88
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	1e-85
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	2e-78
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	4e-69
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	6e-63
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	8e-30
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	1e-29
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	4e-23
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	3e-15
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	1e-05
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	6e-14
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	2e-04
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	2e-12
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	3e-07
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	8e-12
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	1e-04
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	1e-10
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	5e-07
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	9e-10
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	9e-06
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	2e-09
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	5e-06
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	3e-09
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	3e-09
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	2e-08
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	7e-05

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score =  580 bits (1498), Expect = 0.0
 Identities = 160/546 (29%), Positives = 243/546 (44%), Gaps = 37/546 (6%)

Query: 15  ANNVPLTPIDFLERAAHVYGDATSIIYGT----VRFSWRQTHQICLKLASALAQLKISRG 70
             +  L   DFLERAA ++G    +         R ++ + +Q   +L   L  L +  G
Sbjct: 13  MMDEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVG 72

Query: 71  DIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEV 130
           D VA +  N     + +FAVP  GAVL   N RL    +A IL   E K++  D   + +
Sbjct: 73  DRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPL 132

Query: 131 VQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEM 190
           V+          +       V + E               P G L Y + L        +
Sbjct: 133 VEAIRG------ELKTVQHFVVMDEKA-------------PEGYLAYEEALGEEADPVRV 173

Query: 191 MQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLA--QISRCDVRDMPVFLWTLDMF 248
                E     + YT+G+TG PKGVVYSHR   L+SLA   +    + +  V L  + MF
Sbjct: 174 ----PERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMF 229

Query: 249 RCNGWCCTWAMAAVGGINVCI-RTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQ 307
             N WC  +A   VG   V     +    + +      VT   G P +   +A+   S  
Sbjct: 230 HVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG 289

Query: 308 NQLQRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDH 367
           ++L+    +V+ G      ++ +    G  +R  YG+TE     +    K   ES + + 
Sbjct: 290 HRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEE 349

Query: 368 EHEMTKHREGLNNLLIQGVDVKQQN-TMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATE 426
           +  + K + GL    I  V ++  +   + VP DGK LGEV  +   +  GY+ N +AT 
Sbjct: 350 KLTL-KAKTGL---PIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATR 405

Query: 427 EAFR-NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAV 485
            A   +G++ TGD+AV + +GYV++KDR KD+I SG E ISS+++E  L+ +PKV EAAV
Sbjct: 406 SALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAV 465

Query: 486 VGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFF-EDIPVNSTGKV 544
           V     + +E P+A V  +  +    E              +P A  F E+IP  S GK 
Sbjct: 466 VAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKF 525

Query: 545 QKFVLR 550
            K  LR
Sbjct: 526 LKRALR 531

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  388 bits (999), Expect = e-130
 Identities = 111/529 (20%), Positives = 199/529 (37%), Gaps = 43/529 (8%)

Query: 24  DFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPAL 83
            +L + A   G   +I  G   ++++  +     LA  L      +   V     N    
Sbjct: 5   FWLYKQAQQNGHHIAITDGQESYTYQNLYCEASLLAKRLK---AYQQSRVGLYIDNSIQS 61

Query: 84  YKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHK 143
             L  A  +A   ++ +NTRL    + + +R ++ ++IF            + +      
Sbjct: 62  IILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSL------ 115

Query: 144 CDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVN 203
            D           +    +T  +             ++        +    +  D  S+ 
Sbjct: 116 -DDIEFAGRDITTNGLLDNTMGIQ-----YDTSNETVVPKESPSNILNTSFNLDDIASIM 169

Query: 204 YTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAMAAVG 263
           +TSG+TG  K V  + R  Y +++             +L  L ++  +G          G
Sbjct: 170 FTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEG 229

Query: 264 GINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLP 323
                +   +A+ I   I   ++TH+   P+ LN +      +   L  + I++    L 
Sbjct: 230 FTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNL--QKILLGGAKLS 287

Query: 324 TIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHRE-GLNNLL 382
              ++E    +   I +++GMTE     +               E    +    G+    
Sbjct: 288 -ATMIETALQYNLPIYNSFGMTETCSQFLT-----------ATPEMLHARPDTVGMP--- 332

Query: 383 IQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVR 442
              VDVK          + +  GE+M +   VM GY      T   F NG+++TGD+A  
Sbjct: 333 SANVDVK------IKNPNKEGHGELMIKGANVMNGYLYPTDLTG-TFENGYFNTGDIAEI 385

Query: 443 NPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVK 502
           + +GYV + DRRKD+IISG E I   ++E V    P + +A  VG  DD   +VP  +  
Sbjct: 386 DHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFV 445

Query: 503 LKEGREASPEELVTFCGDELPSCMVPRAIFF-EDIPVNSTGKVQKFVLR 550
            +     S  +L+ +    L    VP+     + +P  STGK+Q+  L 
Sbjct: 446 SESD--ISKAQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLY 492

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  386 bits (995), Expect = e-129
 Identities = 137/536 (25%), Positives = 224/536 (41%), Gaps = 56/536 (10%)

Query: 24  DFLERAAHVYGDATSII--YGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIP 81
             L + A V     + +     VR ++ Q + +  + A  L  L I++GD VA + PN  
Sbjct: 20  WMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSV 79

Query: 82  ALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPN 141
               L +     GAV   +NTRL +  ++ IL    +K++        V+          
Sbjct: 80  EFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRA----- 134

Query: 142 HKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPIS 201
               +A    T+ +                 G+    + L    AD   ++   + D + 
Sbjct: 135 ----QADPPGTVTDWI---------------GADSLAERLRSAAADEPAVECGGD-DNLF 174

Query: 202 VNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAMAA 261
           + YTSG+TG PKGVV++H   +  + +  S  DVR     L  L MF           A 
Sbjct: 175 IMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAM 234

Query: 262 VGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQR-KVIIVIAG 320
            G   + +    A  ++  I+  +V      P ILN +       +      +  I    
Sbjct: 235 RGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGA 294

Query: 321 VLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHRE-GLN 379
            +P   +++  A     +   Y +TE                + L  E  + K    G  
Sbjct: 295 PMP-EALIKIYAAKNIEVVQGYALTES-CGGG----------TLLLSEDALRKAGSAGRA 342

Query: 380 NLLIQGVDVKQQNTMKSVPHDGKTL----GEVMFRANTVMLGYFKNPKATEEAFRNGWYH 435
                  DV           DG       GEV+ +++ ++  Y+  P+AT +AF NGW+ 
Sbjct: 343 ---TMFTDVA------VRGDDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAFDNGWFR 393

Query: 436 TGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKE 495
           TGD+   + +GY+ +KDR KD+IISG E +   E+E+V++  P V E AV+G  D++  E
Sbjct: 394 TGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGE 453

Query: 496 VPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFF-EDIPVNSTGKVQKFVLR 550
           +  A V   +  E S +++V +CG  L    +P+ + F E IP N TGK+ K VLR
Sbjct: 454 IAAAIVVADQN-EVSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLR 508

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  376 bits (968), Expect = e-125
 Identities = 117/537 (21%), Positives = 199/537 (37%), Gaps = 52/537 (9%)

Query: 20  LTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPN 79
            T  D   R A ++ D T+ +   VR + R       +LAS L +  +  GD VA ++ N
Sbjct: 6   FTLADVYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQN 65

Query: 80  IPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILS 139
              + +L  AV + GA+L  +N RL++  +A +L      ++     + ++V   L    
Sbjct: 66  CSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLP--- 122

Query: 140 PNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDP 199
                        I +                     + DL                 D 
Sbjct: 123 ---SLGGVKKAYAIGDG--------------SGPFAPFKDLASDTPFSAPEFGAA---DG 162

Query: 200 ISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAM 259
             + +T+   G P+G + S     +   + +    + +  V L  L +F   G      +
Sbjct: 163 FVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTL 222

Query: 260 AAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIAN-ASASDQNQLQRKVIIVI 318
              GG +V             I  HKVT +     +L  I + A+ +    L+     V 
Sbjct: 223 QQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAPAQLASLR----AVT 278

Query: 319 AGVLP-TIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREG 377
               P TIE  E            +G +E                +   +       R  
Sbjct: 279 GLDTPETIERFEATC-PNATFWATFGQSET-SGLS----------TFAPYR-----DRPK 321

Query: 378 LNNLLIQGVDVKQQN-TMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHT 436
                +    V   +   + +P     +GE++ R  TV  GY+ N  AT+ AFRNGW+HT
Sbjct: 322 SAGRPLFWRTVAVVDAEDRPLPPG--EVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHT 379

Query: 437 GDLAVRNPDGYVQMKDR--RKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLK 494
           GD+   + DGY+    R   K++I +G E +   EVE  L  +P + +A V+G  D Q  
Sbjct: 380 GDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWS 439

Query: 495 EVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFF-EDIPVNSTGKVQKFVLR 550
           E   A    K G   + + L  F    +     P+ + F E +P ++ G + +  ++
Sbjct: 440 EAIKAVCVCKPGESIAADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVK 496

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  339 bits (871), Expect = e-111
 Identities = 127/543 (23%), Positives = 202/543 (37%), Gaps = 65/543 (11%)

Query: 24  DFLERAAHVYGDATSIIYGT--VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIP 81
           + L RAA    D  ++      +R +  +       +A+ L    +     VA +APN  
Sbjct: 6   EMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSA 65

Query: 82  ALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPN 141
            +     A+   GAV + LN RL SA LA ++++ E     +                  
Sbjct: 66  DVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVAD---------- 115

Query: 142 HKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPIS 201
                                + S A     G L  +          E  Q      P  
Sbjct: 116 -----------------AIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPA-QPAF 157

Query: 202 VNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMP--VFLWTLDMFRCNGW-CCTWA 258
           + YTSG+TG PK  +   R A    L   ++  +R     V L  + ++   G+     A
Sbjct: 158 IFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVA 217

Query: 259 MAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANA--SASDQNQLQR-KVI 315
             A+ G  V +           +   +VT L   P  L+ +A A   A    +L   + +
Sbjct: 218 ALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHV 277

Query: 316 IVIAGVLPTIEVLEQV-ANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKH 374
                 +P   VLE V  +      + YG TE +    +RQ K     +           
Sbjct: 278 TFAGATMP-DAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKT---GTE---------- 323

Query: 375 REGLNNLLIQGVDVK----QQNTMKSVPHDGKTLGEVMFR-ANTVMLGYFKNPKATEEAF 429
                       +V+         + V +     GE++   +++  +GY   P+AT E  
Sbjct: 324 --MAP---GFFSEVRIVRIGGGVDEIVANG--EEGELIVAASDSAFVGYLNQPQATAEKL 376

Query: 430 RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKV 489
           ++GWY T D+AV  P+G V++  R  D+IISG E I   E+E VL + P V E  V+G  
Sbjct: 377 QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLA 436

Query: 490 DDQLKEVPVAFVKLKEGREASPEELVTFCGDE-LPSCMVPRAIFF-EDIPVNSTGKVQKF 547
           D +  +   A V  + G   S + L TFC    L     P+  F  + +P N+  KV + 
Sbjct: 437 DQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRR 496

Query: 548 VLR 550
            L 
Sbjct: 497 QLV 499

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  315 bits (810), Expect = e-102
 Identities = 115/531 (21%), Positives = 192/531 (36%), Gaps = 53/531 (9%)

Query: 28  RAAHVYGDATSIIYGT-VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKL 86
                     +I      + S+ +      ++A+ L    +  GD VAA          L
Sbjct: 10  FDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVL 69

Query: 87  HFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDK 146
           + A   AG V   LNT      L   +   E KI+  D    + +              K
Sbjct: 70  YLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAI---------AAK 120

Query: 147 APLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTS 206
               V                   P G     D        F  +    + D  ++ YTS
Sbjct: 121 VGATVETLG---------------PDGRGSLTDAAAGASEAFATIDRGAD-DLAAILYTS 164

Query: 207 GSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGW-CCTWAMAAVGGI 265
           G+TG  KG + SH     NSL  +         V +  L ++  +G    +       G 
Sbjct: 165 GTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGS 224

Query: 266 NVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQR-KVIIVIAGVLPT 324
            + +       I D  L+ + T L G P     +  +    +      ++ I  +  L  
Sbjct: 225 MIFLPKFDPDKILD--LMARATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLL- 281

Query: 325 IEVLEQV-ANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLI 383
            +   +  A  G  +   YGMTE               ++             G     +
Sbjct: 282 ADTHREWSAKTGHAVLERYGMTE---------------TNMNTSNPYDGDRVPGAVGPAL 326

Query: 384 QGVDVK--QQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFR-NGWYHTGDLA 440
            GV  +     T K +P     +G +  +   V  GY++ P+ T+  FR +G++ TGDL 
Sbjct: 327 PGVSARVTDPETGKELPRG--DIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLG 384

Query: 441 VRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAF 500
             +  GYV +  R KD++I+G   +   E+E+ + + P V+E+AV+G       E   A 
Sbjct: 385 KIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAV 444

Query: 501 VKLKEGREASPEELVTFCGDELPSCMVPRAIFF-EDIPVNSTGKVQKFVLR 550
           V   +G      +++     +L    +P+ + F +D+P N+ GKVQK VLR
Sbjct: 445 VVRDKGATIDEAQVLHGLDGQLAKFKMPKKVIFVDDLPRNTMGKVQKNVLR 495

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  310 bits (796), Expect = 2e-98
 Identities = 117/541 (21%), Positives = 203/541 (37%), Gaps = 56/541 (10%)

Query: 24  DFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPAL 83
           D L R A    D+ ++I G  + S+R+ +Q    LA +L +  I  G+       N+  L
Sbjct: 31  DILTRHAA--SDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAEL 88

Query: 84  YKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHK 143
           Y   FA+   G            + L +   Q+E  ++  D Q      +          
Sbjct: 89  YITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDF-------- 140

Query: 144 CDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVN 203
                 +               V     SG  +  D +     DF       + +     
Sbjct: 141 --LNTFVTEHSSIRV-------VQLLNDSGEHNLQDAINHPAEDFTATPSPAD-EVAYFQ 190

Query: 204 YTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAMAAV- 262
            + G+TG PK +  +H   Y +    +  C       +L  +            ++    
Sbjct: 191 LSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFL 250

Query: 263 -GGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQR---KVIIVI 318
            GG  V     SA + F  I  H+V      P  +++   A    +++ Q    K++ V 
Sbjct: 251 AGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVG 310

Query: 319 AGVLPTIEVLEQVAN-FGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREG 377
              L    +  ++    G  ++  +GM E L              + LD   E   H +G
Sbjct: 311 GARLS-ATLAARIPAEIGCQLQQVFGMAEGLVNY-----------TRLDDSAEKIIHTQG 358

Query: 378 LNNLLIQGVDVKQQNTMKSVPHDGKTL-----GEVMFRANTVMLGYFKNPKATEEAF-RN 431
               +    +V           +G  L     G +M R      GY+K+P+    AF  N
Sbjct: 359 YP--MCPDDEVW------VADAEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDAN 410

Query: 432 GWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDD 491
           G+Y +GDL   +P+GY+ ++ R KD I  G E I++ E+E +LL +P V+ AA+V   D+
Sbjct: 411 GFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDE 470

Query: 492 QLKEVPVAFVKLKEGREASPEELVTFC-GDELPSCMVPRAIFF-EDIPVNSTGKVQKFVL 549
            + E   A++ +KE       ++  F     +    +P  +   + +P+ + GKV K  L
Sbjct: 471 LMGEKSCAYLVVKEP--LRAVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQL 528

Query: 550 R 550
           R
Sbjct: 529 R 529

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  308 bits (791), Expect = 2e-98
 Identities = 119/539 (22%), Positives = 199/539 (36%), Gaps = 49/539 (9%)

Query: 24  DFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPAL 83
             L      +  + +II G  + S+ +  ++   LA+ LA+  + +GD      PN+   
Sbjct: 34  RILTVGVQSHPHSLAIICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEF 93

Query: 84  YKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNAL-DILSPNH 142
           Y + FA+  AG V+           L + ++Q++ K++    Q      N   D L   +
Sbjct: 94  YIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVN 153

Query: 143 KCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISV 202
                     I   +H             +      D +E     F         +    
Sbjct: 154 -----LSPEIILMLNH------------QATDFGLLDWIETPAETFVDFSSTPADEVAFF 196

Query: 203 NYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAMAA- 261
             + GSTG PK +  +H     +  A    C +      L  L            A+   
Sbjct: 197 QLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVL 256

Query: 262 -VGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQR-KVIIVIA 319
             GG  V          F  I  H+V      P  + M    +A  ++Q+Q  K++ V  
Sbjct: 257 HAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGG 316

Query: 320 GVLPTIEVLEQVAN-FGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGL 378
              P   +  QV       ++  +GM E L     R          LD   E     +G 
Sbjct: 317 ASFP-ESLARQVPEVLNCKLQQVFGMAEGL-VNYTR----------LDDSDEQIFTTQGR 364

Query: 379 NNLLIQGVDVKQQNTMKSVPHDGKTL-----GEVMFRANTVMLGYFKNPKATEEAF-RNG 432
               I   D      +K V    + +     G +  R      GY+++P+   + F  + 
Sbjct: 365 P---ISSDD-----EIKIVDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDN 416

Query: 433 WYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQ 492
           +Y++GDL  R PDG +++  R KD I  G E I+S E+E ++L +P+V+ AA+V  VD+Q
Sbjct: 417 YYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQ 476

Query: 493 LKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFF-EDIPVNSTGKVQKFVLR 550
             E   AF+  +     +           +    +P  I   E +P+ + GKV K  LR
Sbjct: 477 FGEKSCAFIVSRNPELKAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLR 535

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  304 bits (781), Expect = 5e-97
 Identities = 121/539 (22%), Positives = 202/539 (37%), Gaps = 53/539 (9%)

Query: 24  DFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPAL 83
           D L   A  YGD  +I  G   +S+R+      +LA+   +L I + D V    PNI   
Sbjct: 29  DLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEF 88

Query: 84  YKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHK 143
           +++ FA+   GA+         S+ +       EA    +   +                
Sbjct: 89  FEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAY--------------SG 134

Query: 144 CDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVN 203
            D   L   +      Q    ++ N   +G  +    LE    +   +      D   + 
Sbjct: 135 FDYRSLARQV------QSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQ 188

Query: 204 YTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAMAAV- 262
            + GSTG  K +  +H     +    +  C +    V+L  L M           +  + 
Sbjct: 189 LSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLY 248

Query: 263 -GGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQR-KVIIVIAG 320
            GG  V   + S    F  I   KVT     P +  +  +A++S ++ L   +V+ V   
Sbjct: 249 AGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGA 308

Query: 321 VLPTIEVLEQVAN-FGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLN 379
                E   +V   FG  ++  +GM E L     R          LD   E+  + +G  
Sbjct: 309 KFS-AEAARRVKAVFGCTLQQVFGMAEGL-VNYTR----------LDDPEEIIVNTQGKP 356

Query: 380 NLLIQGVDVKQQNTMKSVPHDGKTL-----GEVMFRANTVMLGYFKNPKATEEAF-RNGW 433
             +    + +            + +     G ++ R    + GY+K  +    +F  +G+
Sbjct: 357 --MSPYDESR------VWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGF 408

Query: 434 YHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQL 493
           Y TGD+     DGY+ ++ R KD I  G E +++ EVE  LL++P V +AA+V   D  L
Sbjct: 409 YRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFL 468

Query: 494 KEVPVAFVKLKEGREASPEELVTFC-GDELPSCMVPRAIFF-EDIPVNSTGKVQKFVLR 550
            E    F+  ++       EL  F     L +  +P  + F E  P    GKV K  LR
Sbjct: 469 GERSCVFIIPRDE-APKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALR 526

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  302 bits (776), Expect = 2e-96
 Identities = 129/545 (23%), Positives = 209/545 (38%), Gaps = 62/545 (11%)

Query: 24  DFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPAL 83
            +L R        T+ I  T   ++ +  +   + ASAL  L +   + +  +  +  AL
Sbjct: 27  AYLFRLNETRAGKTAYIDDTGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVAL 86

Query: 84  YKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHK 143
                    AG V    NT L  A    +L    A+ +      V+ V  AL+       
Sbjct: 87  PVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEH--- 143

Query: 144 CDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVN 203
            D   L+V+ P              + P  +  + +L++      +      + D     
Sbjct: 144 -DGCQLIVSQP------------RESEPRLAPLFEELIDAAAPAAKAAATGCD-DIAFWL 189

Query: 204 YTSGSTGDPKGVVYSHRGAYLNSLAQISRC-DVRDMPVFLWTLDMFRCNGWCCTWAMAAV 262
           Y+SGSTG PKG V++H   Y  +         + +  V      +F        +A    
Sbjct: 190 YSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLF--------FAYGLG 241

Query: 263 GGINVCIRT----------VSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQR 312
            G+   +             +A  IF  ++ H+ T   G P +   +  +          
Sbjct: 242 NGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVA 301

Query: 313 KVIIVIAG-VLPTIEVLEQV-ANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHE 370
             I   AG  LP  E+ E+  A+FG  I    G TE+L   +         S+       
Sbjct: 302 IRICTSAGEALPR-EIGERFTAHFGCEILDGIGSTEMLHIFL---------SNRAG---- 347

Query: 371 MTKHREGLNNLLIQGVDVKQQN-TMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAF 429
                 G     + G +++ ++    +VP DG  +G++  +  +  + Y+ N + +   F
Sbjct: 348 --AVEYGTTGRPVPGYEIELRDEAGHAVP-DG-EVGDLYIKGPSAAVMYWNNREKSRATF 403

Query: 430 RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKV 489
              W  +GD   R P+G      R  D++    + +S +EVE VL+ +  VLEAAVVG  
Sbjct: 404 LGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGVD 463

Query: 490 DDQLKEVPVAFVKLKEGREASP---EELVTFCGDELPSCMVPRAIFF-EDIPVNSTGKVQ 545
              L     AFV LK     S    EEL  F  D L     PR I F +D+P  +TGK+Q
Sbjct: 464 HGGL-VKTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQ 522

Query: 546 KFVLR 550
           +F LR
Sbjct: 523 RFKLR 527

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  286 bits (733), Expect = 9e-90
 Identities = 118/567 (20%), Positives = 227/567 (40%), Gaps = 70/567 (12%)

Query: 17  NVPLTPIDFLERAAHVYGDATSIIYGTV--------RFSWRQTHQICLKLASALAQLKIS 68
            + L   D ++ AA  +G+ T+II              ++ +  ++  KLAS +++  + 
Sbjct: 18  KISLA--DRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVR 75

Query: 69  RGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFV 128
           +G+ V    PN        +A+    A    +N    S  L  IL   EA  + V     
Sbjct: 76  KGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLY 135

Query: 129 EVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADF 188
           E  +  L+            + V   E +                    +++++ G  DF
Sbjct: 136 ENFKPVLEKTGVER------VFVVGGEVNSL------------------SEVMDSGSEDF 171

Query: 189 EMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMF 248
           E ++ N E D   + YT G+TG PKGV+ +H     N+L       +  M   +  + MF
Sbjct: 172 ENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMF 231

Query: 249 RCNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQN 308
               +     M  VG   V +   + +++ ++I  +K T     P  LN++ N   S   
Sbjct: 232 HSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNK 291

Query: 309 QLQ-RKVIIVIAGVLP-TIEVLEQVAN-FGFNIRH-------AYGMTEVLGPAIVRQWKP 358
                 + +   G  P    ++E++         +        +GMTE   P        
Sbjct: 292 TYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTE-ACPM------- 343

Query: 359 EGESSALDHEHEMTKHREGLNNLLIQGVDVK--QQNTMKSVPHDGKTLGEVMFRANTVML 416
                  +    + K       + +  +++K       + +       GE++ R   +  
Sbjct: 344 ----VTTNPPLRLDK--STTQGVPMSDIELKVISLEDGRELGVG--ESGEIVIRGPNIFK 395

Query: 417 GYFKNPKATEEAF-----RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVE 471
           GY+K  K  +E +        ++ TGD+   + +G++  +DR K++I      I+  E+E
Sbjct: 396 GYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELE 455

Query: 472 AVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREA--SPEELVTFCGDELPSCMVPR 529
           A+L+ +  V++ AV+GK D++  EVP AF+ LK         E+++ +  + +      R
Sbjct: 456 ALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKRVR 515

Query: 530 AIFF-EDIPVNSTGKVQKFVLRGKVNA 555
            + F E++P  ++GK+ + +LR K   
Sbjct: 516 EVEFVEELPRTASGKLLRRLLREKEAE 542

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  284 bits (730), Expect = 2e-89
 Identities = 127/555 (22%), Positives = 240/555 (43%), Gaps = 54/555 (9%)

Query: 16  NNVPLTPIDFLERAAHVYGDATSIIYGT--VRFSWRQTHQICLKLASALAQLKISRGDIV 73
            N+PL    ++      +     +I G     +++        ++AS L ++ I +GD++
Sbjct: 20  KNLPLH--SYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVI 77

Query: 74  AAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQN 133
               P+ P            GA+++A N     A LA   +   AK++     + E V++
Sbjct: 78  MLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKD 137

Query: 134 ALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQP 193
                       ++ + V                ++ P G L +++L +  + +   +  
Sbjct: 138 F---------ARESDVKVMC-------------VDSAPDGCLHFSELTQADENEAPQVDI 175

Query: 194 NHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMP-----VFLWTLDMF 248
           + + D +++ Y+SG+TG PKGV+ +H+G   + +AQ    D  ++      V L  L MF
Sbjct: 176 SPD-DVVALPYSSGTTGLPKGVMLTHKGLITS-VAQQVDGDNPNLYFHSEDVILCVLPMF 233

Query: 249 RCNGWCCTWAMA-AVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQ 307
                         VG   + +       +   I  +KV+     P ++  IA +   D+
Sbjct: 234 HIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDK 293

Query: 308 NQLQR-KVIIVIAGVLPTIEVLEQVAN--FGFNIRHAYGMTEVLGPAIVRQWKPEGESSA 364
           + L   ++I      L   E+ + V        +   YGMTE  GP +         +  
Sbjct: 294 HDLSSLRMIKSGGAPLG-KELEDTVRAKFPQARLGQGYGMTE-AGPVL---------AMC 342

Query: 365 LDHEHEMTKHREGLNNLLIQGVDVK--QQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNP 422
           L    E    + G    +++  ++K     T  S+P +    GE+  R + +M GY  +P
Sbjct: 343 LAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRN--QPGEICIRGDQIMKGYLNDP 400

Query: 423 KATEEAF-RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVL 481
           +AT     + GW HTGD+   + D  + + DR K++I      ++  E+EA+L+++P++ 
Sbjct: 401 EATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEIS 460

Query: 482 EAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFF-EDIPVNS 540
           +AAVVG  D+   EVPVAFV   E  +A+ +E+  +   ++      + +FF E IP   
Sbjct: 461 DAAVVGLKDEDAGEVPVAFVVKSEKSQATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAP 520

Query: 541 TGKVQKFVLRGKVNA 555
           +GK+ +  L+ K+  
Sbjct: 521 SGKILRKNLKEKLAG 535

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  283 bits (727), Expect = 2e-89
 Identities = 120/539 (22%), Positives = 190/539 (35%), Gaps = 74/539 (13%)

Query: 24  DFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPAL 83
                      D  ++ +G    ++ +        A  +          VA  A      
Sbjct: 27  ALSPAPTGAPADRPALRFGERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMET 81

Query: 84  YKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHK 143
                A  +AG     LN +     LA IL      ++                      
Sbjct: 82  GVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAP------------------- 122

Query: 144 CDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVN 203
              A L   +   +                     D+   G    +        DP  V 
Sbjct: 123 -PDAELPPALGALERVDV-----------------DVRARGAVPEDGADDG---DPALVV 161

Query: 204 YTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGW-CCTWAMAAV 262
           YTSG+TG PKG V   R       A           V +  L +F  +G           
Sbjct: 162 YTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRR 221

Query: 263 GGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQR----KVIIVI 318
           GG    +   S +     +     T L G P + + IA    +D    +     ++++  
Sbjct: 222 GGSVRHLGRFSTEGAARELN-DGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSG 280

Query: 319 AGVLPTIEVLEQVAN-FGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREG 377
           +  LP     E++A   G  +   YGMTE               S   D E      R G
Sbjct: 281 SAALPV-HDHERIAAATGRRVIERYGMTET-LMNT---------SVRADGEP-----RAG 324

Query: 378 LNNLLIQGVDVK--QQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAF-RNGWY 434
              + + GV+++  +++       DG+++GE+  R   +   Y   P AT  AF  +G++
Sbjct: 325 TVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFF 384

Query: 435 HTGDLAVRNPDGYVQMKDRR-KDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQL 493
            TGD+AVR+PDGYV++  R+  D+I SG   I + E+E  LL +P+V EAAV G+ D  L
Sbjct: 385 RTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDL 444

Query: 494 KEVPVAFVKLKE-GREASPEELVTFCGDELPSCMVPRAIFF-EDIPVNSTGKVQKFVLR 550
            E  VA++   +     +   L       L     PR + + + +P N  GK+ K  L 
Sbjct: 445 GERIVAWIVPADPAAPPALGTLADHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALN 503

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  282 bits (725), Expect = 1e-88
 Identities = 105/557 (18%), Positives = 196/557 (35%), Gaps = 63/557 (11%)

Query: 17  NVPLTPIDFLERAAHVYGDATSIIY-----GTVRFSWRQTHQICLKLASALAQLKISRGD 71
                    L +    Y    +I +     G   +S+ +  +    L  AL    +    
Sbjct: 22  EGSAG--TQLRKYMERYAKLGAIAFTNAVTGV-DYSYAEYLEKSCCLGKALQNYGLVVDG 78

Query: 72  IVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVV 131
            +A  + N    +    A    G  ++  N       L   L   +  I+F   + ++ V
Sbjct: 79  RIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKV 138

Query: 132 QNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGK------ 185
                             + TI   D               G    +  ++         
Sbjct: 139 ITV---------QKTVTTIKTIVILDSKVD---------YRGYQCLDTFIKRNTPPGFQA 180

Query: 186 ADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMP----VF 241
           + F+ ++ + +     +  +SGSTG PKGV  +H    +   +        +        
Sbjct: 181 SSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHEN-IVTRFSHARDPIYGNQVSPGTAV 239

Query: 242 LWTLDMFRCNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIAN 301
           L  +      G   T      G   V +     +    ++  +K T +   P +  ++  
Sbjct: 240 LTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNK 299

Query: 302 ASASDQNQLQR-KVIIVIAGVLPTIEVLEQVAN-FGF-NIRHAYGMTEVLGPAIVRQWKP 358
           +   ++  L     I      L   EV E VA  F    +R  YG+TE            
Sbjct: 300 SELLNKYDLSNLVEIASGGAPLS-KEVGEAVARRFNLPGVRQGYGLTE------------ 346

Query: 359 EGESSALDHEHEMTKHREGLNNLLIQGVDVK--QQNTMKSVPHDGKTLGEVMFRANTVML 416
              +++          + G +  ++     K    +T KS+  +    GEV  +   +M 
Sbjct: 347 ---TTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPN--RRGEVCVKGPMLMK 401

Query: 417 GYFKNPKATEEAF-RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLL 475
           GY  NP+AT+E     GW HTGD+   + + +  + DR K +I      +   E+E+VLL
Sbjct: 402 GYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLL 461

Query: 476 SNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRA--IFF 533
            +P + +A V G  D    E+P A V L+ G+  + +E++ +   ++ +    R    F 
Sbjct: 462 QHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFV 521

Query: 534 EDIPVNSTGKVQKFVLR 550
           +++P   TGK+    +R
Sbjct: 522 DEVPKGLTGKIDGRAIR 538

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  275 bits (705), Expect = 1e-85
 Identities = 109/552 (19%), Positives = 210/552 (38%), Gaps = 52/552 (9%)

Query: 17  NVPLTPIDFLERAAHVYG---DATSIIYGT--VRFSWRQTHQICLKLASALAQLKISRGD 71
           +      + L +A   Y       +       V  ++ +  ++ ++LA A+ +  ++   
Sbjct: 19  DGTAG--EQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNH 76

Query: 72  IVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVV 131
            +   + N    +         G  ++  N   +   L + +   +  ++FV  + ++ +
Sbjct: 77  RIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKI 136

Query: 132 QNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMM 191
            N            K P++  I   D            F S        L  G  +++ +
Sbjct: 137 LNVQK---------KLPIIQKIIIMDSKTDYQ-----GFQSMYTFVTSHLPPGFNEYDFV 182

Query: 192 QP--NHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMP---VFLWTLD 246
               + +     +  +SGSTG PKGV   HR A +             +      L  + 
Sbjct: 183 PESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVP 242

Query: 247 MFRCNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASD 306
                G   T      G   V +     ++   S+  +K+      P + +  A ++  D
Sbjct: 243 FHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLID 302

Query: 307 QNQLQR-KVIIVIAGVLPTIEVLEQVAN-FGF-NIRHAYGMTEVLGPAIVRQWKPEGESS 363
           +  L     I      L   EV E VA  F    IR  YG+TE               ++
Sbjct: 303 KYDLSNLHEIASGGAPLS-KEVGEAVAKRFHLPGIRQGYGLTE---------------TT 346

Query: 364 ALDHEHEMTKHREGLNNLLIQGVDVK--QQNTMKSVPHDGKTLGEVMFRANTVMLGYFKN 421
           +          + G    ++   + K    +T K++  +    GE+  R   +M GY  N
Sbjct: 347 SAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVN--QRGELCVRGPMIMSGYVNN 404

Query: 422 PKATEEAF-RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKV 480
           P+AT     ++GW H+GD+A  + D +  + DR K +I      ++  E+E++LL +P +
Sbjct: 405 PEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNI 464

Query: 481 LEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRA--IFFEDIPV 538
            +A V G  DD   E+P A V L+ G+  + +E+V +   ++ +    R   +F +++P 
Sbjct: 465 FDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPK 524

Query: 539 NSTGKVQKFVLR 550
             TGK+    +R
Sbjct: 525 GLTGKLDARKIR 536

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  265 bits (679), Expect = 2e-78
 Identities = 130/556 (23%), Positives = 243/556 (43%), Gaps = 62/556 (11%)

Query: 16  NNVPLTPIDFLERAAHVYGDATSIIYGT--VRFSWRQTHQICLKLASALAQLKISRGDIV 73
           N++ L   D++ +    +     +I G     +++   H I  ++A+   +L +++ D+V
Sbjct: 59  NHLSLH--DYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVV 116

Query: 74  AAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLE---AKIIFVDYQFVEV 130
             + PN P       A    GA  +A N      T A I +Q +    K+I  + ++V+ 
Sbjct: 117 MLLLPNCPEFVLSFLAASFRGATATAAN---PFFTPAEIAKQAKASNTKLIITEARYVDK 173

Query: 131 VQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEM 190
           ++            +   +++   + +   P         P G L + +L +      E+
Sbjct: 174 IKPL---------QNDDGVVIVCIDDNESVP--------IPEGCLRFTELTQSTTEASEV 216

Query: 191 MQP--NHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMP-----VFLW 243
           +        D +++ Y+SG+TG PKGV+ +H+G  + S+AQ    +  ++      V L 
Sbjct: 217 IDSVEISPDDVVALPYSSGTTGLPKGVMLTHKG-LVTSVAQQVDGENPNLYFHSDDVILC 275

Query: 244 TLDMFRCNG--WCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIAN 301
            L MF            +   G   + +      ++ + I   KVT     P I+  IA 
Sbjct: 276 VLPMFHIYALNSIMLCGLRV-GAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAK 334

Query: 302 ASASDQNQLQRKVIIVIAGVLP-TIEVLEQVAN--FGFNIRHAYGMTEVLGPAIVRQWKP 358
           +S +++  L   + +V +G  P   E+ + V        +   YGMTE  GP +      
Sbjct: 335 SSETEKYDLSS-IRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTE-AGPVL------ 386

Query: 359 EGESSALDHEHEMTKHREGLNNLLIQGVDVK--QQNTMKSVPHDGKTLGEVMFRANTVML 416
              + +L    E    + G    +++  ++K    +T  S+    +  GE+  R + +M 
Sbjct: 387 ---AMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSR-NQP-GEICIRGHQIMK 441

Query: 417 GYFKNPKATEEAF-RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLL 475
           GY  NP AT E   ++GW HTGD+ + + D  + + DR K++I      ++  E+EA+L+
Sbjct: 442 GYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLI 501

Query: 476 SNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFF-E 534
            +P + + AVV   ++   EVPVAFV   +  E S +++  F   ++        +FF E
Sbjct: 502 GHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINKVFFTE 561

Query: 535 DIPVNSTGKVQKFVLR 550
            IP   +GK    +LR
Sbjct: 562 SIPKAPSGK----ILR 573

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score =  232 bits (593), Expect = 4e-69
 Identities = 115/540 (21%), Positives = 198/540 (36%), Gaps = 81/540 (15%)

Query: 43  TVRFSWRQTHQICLKLASALAQ-LKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALN 101
            + +++R+  +   + A+ L+    + RGD VA + P +P  + +      AG +     
Sbjct: 71  ELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGT 130

Query: 102 TRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQP 161
            ++ S  +   L+  +AK I    + ++ V              + P L           
Sbjct: 131 IQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVAS---------ECPSLRIKL------- 174

Query: 162 STCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRG 221
               V+     G L++  LL         ++   + +  ++ +TSG++G PK   +S+  
Sbjct: 175 ---LVSEKSCDGWLNFKKLLNEASTTHHCVETGSQ-EASAIYFTSGTSGLPKMAEHSYSS 230

Query: 222 AYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCIRTV--------S 273
             L +        ++   +     D     GW     + ++                   
Sbjct: 231 LGLKAKMDAGWTGLQASDIMWTISDT----GWI-LNILCSLMEPWALGACTFVHLLPKFD 285

Query: 274 AKIIFDSILIHKVTHLCGQP---RILNMIANASASDQNQLQRKVIIVIAG--VLPTIEVL 328
             +I  ++  + +  + G P   R+L +  + S+     LQ     V  G  +LP  E L
Sbjct: 286 PLVILKTLSSYPIKSMMGAPIVYRML-LQQDLSSYKFPHLQN---CVTVGESLLP--ETL 339

Query: 329 EQV-ANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTK----HREGLNNLLI 383
           E   A  G +IR +YG TE     +V +               M      +        +
Sbjct: 340 ENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGY-------MGTAASCYD-------V 385

Query: 384 QGVDVKQQNTMKSVPHDGKTLGEVMFRANTV-----MLGYFKNPKATEEAFRNGWYHTGD 438
           Q +D    +    +P    T G++  R   +       GY  NP  T    R  ++  GD
Sbjct: 386 QIID----DKGNVLPPG--TEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGD 439

Query: 439 LAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPV 498
             +++ DGY Q   R  DII S    I   EVE  L+ +P V+E AV+   D    EV  
Sbjct: 440 RGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVK 499

Query: 499 AFVKLKEGREASP-----EELVTFCGDELPSCMVPRAIFF-EDIPVNSTGKVQKFVLRGK 552
           AFV L     +       +EL             PR I F  ++P   TGK+Q+  LR K
Sbjct: 500 AFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDK 559

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score =  215 bits (551), Expect = 6e-63
 Identities = 120/575 (20%), Positives = 210/575 (36%), Gaps = 104/575 (18%)

Query: 24  DFLERAAHVYGDATSIIY-----GTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAP 78
           D ++  A    +  ++I+         F+++       K A+   +  I +GD V     
Sbjct: 60  DVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLK 119

Query: 79  NIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDIL 138
           +    +     +   GA+       L +  +   + +   K+         +V  A D +
Sbjct: 120 SRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKM---------IVCIAEDDV 170

Query: 139 SPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHEC- 197
               + D+A       EC         V  +   G +D+   LE     FE         
Sbjct: 171 PE--QVDEAH-----AECGDIPLKKAKVGGDVLEGWIDFRKELEESSPIFERPTGEVSTK 223

Query: 198 --DPISVNYTSGSTGDPKGVVYSHR---GAYLNSLAQISRCDVRDMPVFLWTLDMFRCNG 252
             D   V ++SG+ G PK V + +    G  L +       +V D  +     D     G
Sbjct: 224 NEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ---NVEDDGLHYTVADS----G 276

Query: 253 WCCTWAMAAVGGINVCIRTV--------SAKIIFDSILIHKVTHLCGQP---RILNMIAN 301
           W        + G  +    V         AK + +    + VT  C  P   R L +  +
Sbjct: 277 WG-KCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFL-IKED 334

Query: 302 ASASDQNQLQRKVIIVIAG--VLPTIEVLEQV-ANFGFNIRHAYGMTE---VLGPAIVRQ 355
            S  + + L+     V+AG  + P  EV  +     G  +   +G TE    +      +
Sbjct: 335 LSHYNFSTLK---YAVVAGEPLNP--EVFNRFLEFTGIKLMEGFGQTETVVTIATFPWME 389

Query: 356 WKPEGESSALDHEHEMTK----HREGLNNLLIQGVDVKQQNTMKSVPHDGKTL-----GE 406
            KP G  S       + K    ++          +++        +  DG+       GE
Sbjct: 390 PKP-G--S-------IGKPTPGYK----------IEL--------MDRDGRLCEVGEEGE 421

Query: 407 VMFRANT-----VMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISG 461
           ++          + + Y K+P+ TEE + +G+YHTGD+A  + DGY+    R  DII + 
Sbjct: 422 IVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMDEDGYLWFVGRADDIIKTS 481

Query: 462 AEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPE---ELVTFC 518
              +   EVE+ L+ +P VLE A+ G  D    +V  A + L +    S     EL    
Sbjct: 482 GYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHV 541

Query: 519 GDELPSCMVPRAIFF-EDIPVNSTGKVQKFVLRGK 552
            +       PR I F  ++P   +GK+++  +R K
Sbjct: 542 KNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDK 576

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score =  122 bits (309), Expect = 8e-30
 Identities = 97/596 (16%), Positives = 182/596 (30%), Gaps = 107/596 (17%)

Query: 19  PLTPIDFLERAAHVYGDATSIIY----GTVRFSWRQTHQICLKLASALAQLKISRGDIVA 74
             + +D +   A    +  S  +         ++ Q  Q    +A+ L       GD V 
Sbjct: 10  CQSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVL 69

Query: 75  AMAPN----IPALYKLHFAVPMAGAV---LSALNTRLDSATLASILRQLEAKIIFVDYQF 127
            +       I A          AG +   +              I+   +  I+ +    
Sbjct: 70  LLFAPGLPLIQAF----LGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADH 125

Query: 128 VEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKAD 187
           ++               +  P  + IP                    +    +     + 
Sbjct: 126 IKKFTADE--------LNTNPKFLKIPA-------------------IALESIELNRSSS 158

Query: 188 FEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFL-WTLD 246
           ++        D   + YTSGST  PKGV+ SH     N     +   + D  +   W L 
Sbjct: 159 WQPTSIKSN-DIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSW-LP 216

Query: 247 MFRCN----GWCCTWAMAAVGGINVCIRTVSAKIIF--------DSILIHKVTHLCGQPR 294
               +    G   T      G   + +   S    F          I  +K T       
Sbjct: 217 PH-HDMGLIGCILT--PIYGGIQAIMMSPFS----FLQNPLSWLKHITKYKATISGSPNF 269

Query: 295 ILNMIANASASDQNQ---LQRKVIIVIAG---VLPTIEV-LEQVANFGFN---IRHAYGM 344
             +        ++ +   L   V            T+E   +    FGF        YG+
Sbjct: 270 AYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGL 329

Query: 345 TE----VLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLL--------IQGVDVKQQN 392
            E    V G      +K    +     +H +    +              IQ V +   +
Sbjct: 330 AEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIIDPD 389

Query: 393 TMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRN---------GWYHTGDLAVRN 443
           T+     D   +GE+  ++N+V  GY+  P+ T  AF            +  TGDL   +
Sbjct: 390 TLIPCDFD--QVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH 447

Query: 444 PDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLE----AAVVGKVDDQLKEVPVA 499
            +  + +  R KD+II   +     ++E  L+ +P        AA V + + + K   + 
Sbjct: 448 -ENELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEHEYKLTVMC 506

Query: 500 FVKLKEGREASPEELVTFCGDELPSC--MVPRAIFF---EDIPVNSTGKVQKFVLR 550
            VK +   + + + L     + +     +    I     + +P  ++GK+++   R
Sbjct: 507 EVKNRFMDDVAQDNLFNEIFELVYENHQLEVHTIVLIPLKAMPHTTSGKIRRNFCR 562

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score =  101 bits (253), Expect = 4e-23
 Identities = 81/486 (16%), Positives = 136/486 (27%), Gaps = 110/486 (22%)

Query: 23  IDFLERAAHVYGDATSIIY---------GTVRFSWRQTHQICLKLASALAQLKISRGDIV 73
              L   A +     +  +           +  +W Q ++  L +A  L++   S GD V
Sbjct: 27  PAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRC-GSTGDRV 85

Query: 74  AAMAPN----IPALYKLHFAVPMAGAV---LSALNTRLDSATLASILRQLEAKIIFVDYQ 126
              AP     + A          AG +   LS     +      S+L       I     
Sbjct: 86  VISAPQGLEYVVAF----LGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSS 141

Query: 127 FVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKA 186
            V+ V   +         +  P ++ +   D   P+  +   +                 
Sbjct: 142 AVDDVVQHVARRPG----ESPPSIIEVDLLDLDAPNGYTFKEDEYP-------------- 183

Query: 187 DFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLD 246
               +Q           YTSGST  P GVV SH+   +N   Q+      D         
Sbjct: 184 STAYLQ-----------YTSGSTRTPAGVVMSHQNVRVN-FEQLMSGYFADTDGIPPPNS 231

Query: 247 MFRCNGWCCTWA-----MAAVGGINVCIRTVSAKII-------------FDSILIHKVTH 288
                    +W      M  V GI   I      ++                +       
Sbjct: 232 AL------VSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHAF 285

Query: 289 LCGQPRILNMIANASASDQNQ---LQRKVIIVIAG--VLP-TIEV-LEQVANFGFN---I 338
                    + A  +  D      L   + I+     V   TI+   ++ A F      I
Sbjct: 286 SAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVI 345

Query: 339 RHAYGMTE----VLGPAIVRQWKPEG-ESSALDHEHEMTKHREGLNNLLIQGVDVKQQ-- 391
           R +Y + E    V      +  +    ++ +L   H       G  +L+   +       
Sbjct: 346 RPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRSPIVR 405

Query: 392 ----NTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRN------------GWYH 435
               +T    P    T+GE+    + V  GY++ P  +E  F               W  
Sbjct: 406 IVDSDTCIECPDG--TVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLR 463

Query: 436 TGDLAV 441
           TGD   
Sbjct: 464 TGDSGF 469

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score = 77.6 bits (192), Expect = 3e-15
 Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 6/124 (4%)

Query: 432 GWYHTGDLAVRNPDGYVQMKDRRKDII-ISGAEIISSLEVEAVLLSNPKVLEAAVVGKVD 490
             Y +GD A R+ DGY  +  R  D++ +SG  +  + E+E+ L+++PK+ EAAVVG   
Sbjct: 494 NMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRL-GTAEIESALVAHPKIAEAAVVGIPH 552

Query: 491 DQLKEVPVAFVKLKEGREASPE---ELVTFCGDELPSCMVPRAIFF-EDIPVNSTGKVQK 546
               +   A+V L  G E SPE   E+  +   E+     P  + + + +P   +GK+ +
Sbjct: 553 AIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMR 612

Query: 547 FVLR 550
            +LR
Sbjct: 613 RILR 616

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 57/229 (24%), Positives = 92/229 (40%), Gaps = 58/229 (25%)

Query: 26  LERAAHVYGDATSIIY-----GTVR-FSWRQTH-QICLKLASALAQLKISRGDIVAAMAP 78
           L+R     GD T+II+        +  S+R+ H  +C + A+ L  L I +GD+VA   P
Sbjct: 82  LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVC-RFANTLLDLGIKKGDVVAIYMP 140

Query: 79  NIPALYKLHFAVPMA-----GAVLS---------ALNTRLDSATLASILRQLEAK-IIFV 123
            +P       AV M      GAV S         A+   +  +          ++ +I  
Sbjct: 141 MVPEA-----AVAMLACARIGAVHSVIFGGFSPEAVAGCIIDS---------SSRLVITA 186

Query: 124 DYQF-----VEVVQNALDILSPNHKCDKAPLLVTIPECDH---YQPSTCSVANNFPSGSL 175
           D        + + +N           D A     +   +H    + +   +        L
Sbjct: 187 DEGVRAGRSIPLKKNV----------DDALKNPNVTSVEHVIVLKRTGSDIDWQ-EGRDL 235

Query: 176 DYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYL 224
            + DL+E    + +    N E DP+ + YTSGSTG PKGV+++  G YL
Sbjct: 236 WWRDLIEKASPEHQPEAMNAE-DPLFILYTSGSTGKPKGVLHTT-GGYL 282

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663

 Score = 73.8 bits (182), Expect = 6e-14
 Identities = 42/131 (32%), Positives = 67/131 (51%), Gaps = 13/131 (9%)

Query: 432 GWYHTGDLAVRNPDGYVQMKDRRKDII-ISGAEIISSLEVEAVLLSNPKVLEAAVVGKVD 490
           G+Y TGD A ++ DGY+ +  R  D++ +SG  + S+ E+EA ++ +P V E AVVG  D
Sbjct: 503 GYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRL-STAEIEAAIIEDPIVAECAVVGFND 561

Query: 491 DQLKEVPVAFVKLKEGREASP----------EELVTFCGDELPSCMVPRAIFF-EDIPVN 539
           D   +   AFV LK     S           + LV     ++     P+ I   +D+P  
Sbjct: 562 DLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKT 621

Query: 540 STGKVQKFVLR 550
            +GK+ + +LR
Sbjct: 622 RSGKIMRRILR 632

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663

 Score = 43.3 bits (103), Expect = 2e-04
 Identities = 52/233 (22%), Positives = 92/233 (39%), Gaps = 66/233 (28%)

Query: 26  LERAAHVYGDATSIIY-----GTVR-FSWRQTH-QICLKLASAL-AQLKISRGDIVAAMA 77
           ++R A    +  +II+     G     ++++   ++C ++A  L   + + +GD VA   
Sbjct: 88  VDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVC-QVAQVLTYSMGVRKGDTVAVYM 146

Query: 78  PNIPALYKLHFAVPM-A----GAVLS---------ALNTRLDSATLASILRQLEAK-IIF 122
           P +P        + + A    GA+ S         +L  R++           ++K +I 
Sbjct: 147 PMVPEA-----IITLLAISRIGAIHSVVFAGFSSNSLRDRINDG---------DSKVVIT 192

Query: 123 VDYQF-----VEVVQNALDILSPNHKCDKAPLLVTIPECDH---YQPSTCSVANNFPSG- 173
            D        +E  +            D A  L   P   H   Y+  T + +  F +  
Sbjct: 193 TDESNRGGKVIETKRIV----------DDA--LRETPGVRHVLVYR-KTNNPSVAFHAPR 239

Query: 174 SLDYNDLLEMGKADF--EMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYL 224
            LD+    +  K  +    +  + E DP+ + YTSGSTG PKGV +S    YL
Sbjct: 240 DLDWATEKKKYKTYYPCTPV--DSE-DPLFLLYTSGSTGAPKGVQHST-AGYL 288

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score = 68.3 bits (168), Expect = 2e-12
 Identities = 36/157 (22%), Positives = 59/157 (37%), Gaps = 45/157 (28%)

Query: 417 GYFKNPKATEEAF------RNGWYHTGDLAVRNPDG---YV-----QMKDR--RKDIIIS 460
           GY  NP+ T EAF          YHTGD+     D    Y      Q+K    R   I  
Sbjct: 361 GYLNNPEKTAEAFFTFKGQP--AYHTGDIGSLTEDNILLYGGRLDFQIKYAGYR---IEL 415

Query: 461 GAEIISSLEVEAVLLSNPKVLEAAVVGKVDD-----QLKEVPVAFVKLKEGREAS----- 510
                   +V   L  +P V  A  V + +       L    +A++ +K+G +       
Sbjct: 416 E-------DVSQQLNQSPMVASAVAVPRYNKEHKVQNL----LAYIVVKDGVKERFDREL 464

Query: 511 --PEELVTFCGDELPSCMVPRA-IFFEDIPVNSTGKV 544
              + +     D + S M+P   ++ + +P+   GK+
Sbjct: 465 ELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKI 501

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score = 52.2 bits (126), Expect = 3e-07
 Identities = 39/214 (18%), Positives = 69/214 (32%), Gaps = 26/214 (12%)

Query: 146 KAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYT 205
           K  L++                      SL   +  ++ +  +E        D   + +T
Sbjct: 101 KPSLIIA-------IEEFPLTIEGISLVSLSEIESAKLAEMPYERTHSVKGDDNYYIIFT 153

Query: 206 SGSTGDPKGVVYSHRGA--YLNSLAQISRCDVRDMPVFLW----TLDMFRCNGWCCTWAM 259
           SG+TG PKGV  SH     + N + + +  DV   P  L     + D+           +
Sbjct: 154 SGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLS---VMYWAPTL 210

Query: 260 AAVGGINVCIR----TVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVI 315
           A   G  +           K +F +I    V      P   +M   +    Q ++     
Sbjct: 211 AL--GGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTH 268

Query: 316 IVIAG-VLPTIEVLEQVANFGFNIR--HAYGMTE 346
               G  L  +    ++     + +  +AYG TE
Sbjct: 269 FYFDGEELT-VSTARKLFERFPSAKIINAYGPTE 301

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 66.7 bits (164), Expect = 8e-12
 Identities = 43/150 (28%), Positives = 64/150 (42%), Gaps = 38/150 (25%)

Query: 417 GYFKNPKATEE-----AFRNG--WYHTGDLAVRNPDG---YV-----QMKDR--RKDIII 459
           GY+K P+ T +      F  G   Y TGD A    DG   Y+     Q+K R  R   + 
Sbjct: 385 GYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHR---VE 441

Query: 460 SGAEIISSLEVEAVLLSNPKVLEAAVVGKVDD----QLKEVPVAFVKLKEGREASPEELV 515
                    EVE++LL +  + E AV    D      L     A+   ++      E+L 
Sbjct: 442 LE-------EVESILLKHMYISETAVSVHKDHQEQPYL----CAYFVSEK--HIPLEQLR 488

Query: 516 TFCGDELPSCMVPRA-IFFEDIPVNSTGKV 544
            F  +ELP+ M+P   I  + +P+ S GK+
Sbjct: 489 QFSSEELPTYMIPSYFIQLDKMPLTSNGKI 518

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 44.0 bits (105), Expect = 1e-04
 Identities = 30/160 (18%), Positives = 51/160 (31%), Gaps = 34/160 (21%)

Query: 202 VNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVR-------------DMPV--FLWTLD 246
           V YTSG+TG+PKG +  H+G     +   +  +V              D  V      L 
Sbjct: 187 VIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMAL- 245

Query: 247 MFRCNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASD 306
                G      +     IN              I   ++T +   P  +  +       
Sbjct: 246 ---LTGASL--YIILKDTIN------DFVKFEQYINQKEITVITLPPTYVVHLDPERILS 294

Query: 307 QNQLQRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTE 346
              +Q    ++ AG   +  ++ +         +AYG TE
Sbjct: 295 ---IQT---LITAGSATSPSLVNKWKE-KVTYINAYGPTE 327

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 63.8 bits (156), Expect = 1e-10
 Identities = 42/150 (28%), Positives = 63/150 (42%), Gaps = 38/150 (25%)

Query: 417 GYFKNPKATEEAF-----RNGW--YHTGDLAVRNPDG---YV-----QMKDR--RKDIII 459
           GY      T+E F     + G   Y TGDLA   PDG   Y      Q+K R  R   I 
Sbjct: 816 GYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHR---IE 872

Query: 460 SGAEIISSLEVEAVLLSNPKVLEAAVVGKVDD----QLKEVPVAFVKLKEGREASPEELV 515
                    E+E  L   P V +A VV    +     +     A++  +   + S E++ 
Sbjct: 873 LE-------EIEKQLQEYPGVKDAVVVADRHESGDASI----NAYLVNRT--QLSAEDVK 919

Query: 516 TFCGDELPSCMVPRA-IFFEDIPVNSTGKV 544
                +LP+ MVP+   F +++P+ + GKV
Sbjct: 920 AHLKKQLPAYMVPQTFTFLDELPLTTNGKV 949

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 51.9 bits (125), Expect = 5e-07
 Identities = 30/161 (18%), Positives = 53/161 (32%), Gaps = 31/161 (19%)

Query: 202 VNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLW---------TLDMFRCNG 252
           + YTSG+TG PKG + +H       +  +      D   FL          T D +    
Sbjct: 612 IMYTSGTTGKPKGNITTHANI-QGLVKHVDYMAFSDQDTFLSVSNYAFDAFTFDFY---- 666

Query: 253 WCCTWAMAAVGGINVCIRT----VSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQN 308
                +M       + I      +  + + D IL   V  +     + N++ +A      
Sbjct: 667 ----ASMLN--AARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDWMK 720

Query: 309 QLQRKVIIVIAG-VLPTIEVLEQVANFGFNIR--HAYGMTE 346
            L+    I+  G        + +        +  + YG TE
Sbjct: 721 GLRC---ILFGGERASV-PHVRKALRIMGPGKLINCYGPTE 757

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score = 60.2 bits (147), Expect = 9e-10
 Identities = 38/153 (24%), Positives = 55/153 (35%), Gaps = 42/153 (27%)

Query: 417 GYFKNPKATEEAF------RNGWYHTGDLAVRNPDG---YV-----QMKDR--RKDIIIS 460
           GY  +P+ TE+AF      R   Y TGD A    +G   Y      Q+K    R   +  
Sbjct: 358 GYLGSPELTEKAFTMIDGER--AYKTGD-AGYVENGLLFYNGRLDFQIKLHGYR---MEL 411

Query: 461 GAEIISSLEVEAVLLSNPKVLEAAVVGKVDD----QLKEVPVAFV----KLKEGREASPE 512
                   E+E  L +   V  A +V          L    +A V       E       
Sbjct: 412 E-------EIEHHLRACSYVEGAVIVPIKKGEKYDYL----LAVVVPGEHSFEKEFKLTS 460

Query: 513 ELVTFCGDELPSCMVPRA-IFFEDIPVNSTGKV 544
            +     + LP+ M+PR  ++   IP+   GKV
Sbjct: 461 AIKKELNERLPNYMIPRKFMYQSSIPMTPNGKV 493

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score = 47.5 bits (114), Expect = 9e-06
 Identities = 32/156 (20%), Positives = 58/156 (37%), Gaps = 17/156 (10%)

Query: 202 VNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFL----WTLDMFRCNGWCCTW 257
           + YTSGSTG+PKGV  ++      +   +   +++   VFL    ++ D+          
Sbjct: 149 IIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLS---VMDIYP 205

Query: 258 AMAAVGGINVCIRT----VSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRK 313
           ++    G  +           K +F S+    +      P    M    ++  ++ L   
Sbjct: 206 SLVT--GGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNM 263

Query: 314 VIIVIAG-VLPTIEVLEQVANFGFNIR--HAYGMTE 346
              +  G VLP  EV  ++          + YG TE
Sbjct: 264 KTFLFCGEVLPN-EVARKLIERFPKATIMNTYGPTE 298

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 58.7 bits (143), Expect = 2e-09
 Identities = 34/153 (22%), Positives = 53/153 (34%), Gaps = 42/153 (27%)

Query: 417 GYFKNPKATEEAF------RNGWYHTGDLAVRNPDG---YV-----QMKDR--RKDIIIS 460
           GY   P+ TE+AF          Y TGD A    DG          Q+K    R   +  
Sbjct: 357 GYLGEPELTEKAFFSHEGQW--AYRTGD-AGFIQDGQIFCQGRLDFQIKLHGYR---MEL 410

Query: 461 GAEIISSLEVEAVLLSNPKVLEAAVVGKVDD----QLKEVPVAFV----KLKEGREASPE 512
                   E+E  +  +  V  A V+    +     L    +A +       E       
Sbjct: 411 E-------EIEFHVRQSQYVRSAVVIPYQPNGTVEYL----IAAIVPEEHEFEKEFQLTS 459

Query: 513 ELVTFCGDELPSCMVPRA-IFFEDIPVNSTGKV 544
            +       LP+ M+PR  I+ + I + + GK+
Sbjct: 460 AIKKELAASLPAYMIPRKFIYQDHIQMTANGKI 492

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 48.3 bits (116), Expect = 5e-06
 Identities = 38/223 (17%), Positives = 67/223 (30%), Gaps = 46/223 (20%)

Query: 146 KAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPIS---V 202
            A LL+              ++ +     +      E+ + +   +  +          +
Sbjct: 99  GAELLIH----------AAGLSIDAVGQQIQTVSAEELLENEGGSVSQDQWVKEHETFYI 148

Query: 203 NYTSGSTGDPKGVVYSHRGAYLNSL-AQISRCDVRDMPVFL---------------WTLD 246
            YTSGSTG+PKGV  S      +      +   V    +FL                 L 
Sbjct: 149 IYTSGSTGNPKGVQISAANL-QSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCL- 206

Query: 247 MFRCNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASD 306
               +G   T        +N        K++F+ +    +      P  + M        
Sbjct: 207 ---QSG--GTLHCVTKDAVN------KPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFS 255

Query: 307 QNQLQRKVIIVIAG-VLPTIEVLEQVANFGFNIR--HAYGMTE 346
           Q+ L      +  G VLP   V + +       +  + YG TE
Sbjct: 256 QDLLPHADTFMFCGEVLPV-SVAKALLERFPKAKIFNTYGPTE 297

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369

 Score = 58.2 bits (140), Expect = 3e-09
 Identities = 51/301 (16%), Positives = 86/301 (28%), Gaps = 60/301 (19%)

Query: 198 DPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMP---VFLWTLDMFRCNGWC 254
               V  + G+TG PK VV            ++S    R        L  +         
Sbjct: 92  SHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGA 151

Query: 255 CTWAMAAVGG-----INVCIRTVSAKI------------------IFDSILIHKVTHLCG 291
                A   G     I++  R V   +                  + ++++   +  L  
Sbjct: 152 INKERALRLGGMFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVT 211

Query: 292 QPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVAN---FGFNIRHAYGMTEVL 348
            P +L  +           Q    I + G    ++ ++ +A+          +YG T  L
Sbjct: 212 TPPVLRELLKRPEVVLQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSAL 271

Query: 349 GPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVM 408
           G +       E +    D                    DV    T ++V   G+  G V+
Sbjct: 272 GVSRSLLITSESQQVIYDSFSPFI------------TYDVVDSITAQTVE-YGER-GNVI 317

Query: 409 FRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDI----IISGAEI 464
               T +         +  AF        D A+R P       DR  DI    I  G ++
Sbjct: 318 V---THL---------SPWAFYPR-VAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKV 364

Query: 465 I 465
           I
Sbjct: 365 I 365

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 58.7 bits (143), Expect = 3e-09
 Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 40/149 (26%)

Query: 417 GYFKNPKATEEAF----------RNGWYHTGDLAVRNPDG---YV-----QMKDR--RKD 456
           GY  +   T  +F          R   Y TGD A  +  G   ++     Q+K    R  
Sbjct: 373 GYRNDAARTRASFVELPYRGRLLR--AYRTGDRARYDEQGRLRFIGRGDGQVKLNGYR-- 428

Query: 457 IIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVT 516
            +           +E      P +L+ A++ +  + +K++  A+           +    
Sbjct: 429 -LDLP-------ALEQRFRRQPGILDCALLVRERNGVKQLLCAWT-------GKADASPQ 473

Query: 517 FCGDELPSCMVPRA-IFFEDIPVNSTGKV 544
               +LP+   P A +  E +P+ + GK+
Sbjct: 474 ALLRQLPTWQRPHACVRVEALPLTAHGKL 502

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 45.2 bits (108), Expect = 4e-05
 Identities = 27/161 (16%), Positives = 56/161 (34%), Gaps = 32/161 (19%)

Query: 202 VNYTSGSTGDPKGVVYSHRGAYLNSLAQISR-CDVRDMPVFLW---------TLDMFRCN 251
           +N++SG+TG PK +  +H G  +  L              FL          TL+++   
Sbjct: 169 INFSSGTTGRPKAIACTHAG--ITRLCLGQSFLAFAPQMRFLVNSPLSFDAATLEIW--- 223

Query: 252 GWCCTWAMAAVGGINVCIR--TVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQ 309
                 A+   GG  V      +   ++   I             + N + +        
Sbjct: 224 -----GALLN-GGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPDCLGG 277

Query: 310 LQRKVIIVIAG--VLPTIEVLEQV--ANFGFNIRHAYGMTE 346
           L++    ++ G  +L  +  + +    +   ++ + YG TE
Sbjct: 278 LRQ----LLTGGDILS-VPHVRRALLRHPRLHLVNGYGPTE 313

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.6 bits (138), Expect = 9e-09
 Identities = 64/472 (13%), Positives = 134/472 (28%), Gaps = 160/472 (33%)

Query: 25  FLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALY 84
           ++E+   +Y D        V    R   Q  LKL  AL +L+ ++  ++           
Sbjct: 112 YIEQRDRLYNDNQVFAKYNV---SR--LQPYLKLRQALLELRPAKN-VL----------- 154

Query: 85  KLHFAVPMAGA---VLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPN 141
            +     + G+    + AL+  L       +  +++ KI +++ +               
Sbjct: 155 -ID---GVLGSGKTWV-ALDVCLSY----KVQCKMDFKIFWLNLK--------------- 190

Query: 142 HKCDKAPLLVTIPE--CDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDP 199
             C+    ++ + +       P+  S +++  +  L  + +    +A+   +  +     
Sbjct: 191 -NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI----QAELRRLLKSKP--- 242

Query: 200 ISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCT--- 256
                                  Y N L  +   +V++        + F  N  C     
Sbjct: 243 -----------------------YENCLL-VLL-NVQN----AKAWNAF--NLSCKILLT 271

Query: 257 ----WAMAAVGGINVCIRTVS----------AKIIFDSILIHKVTHL----C-GQPRILN 297
                    +        ++            K +    L  +   L        PR L+
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331

Query: 298 MIANASASDQNQLQR----------KVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEV 347
           +IA    S ++ L            K+  +I     ++ VLE         R  +    V
Sbjct: 332 IIA---ESIRDGLATWDNWKHVNCDKLTTIIES---SLNVLEPA-----EYRKMFDRLSV 380

Query: 348 LG-----PAIV--RQWKPEGESSALDHEHEMTK-HREGLNNLLIQGVDVKQQNTMKSVPH 399
                  P I+    W    +    D    + K H+  L          KQ         
Sbjct: 381 FPPSAHIPTILLSLIW---FDVIKSDVMVVVNKLHKYSLVE--------KQPKESTISIP 429

Query: 400 DG----KTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGY 447
                 K   E  +  +  ++ ++  PK          + + DL     D Y
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKT---------FDSDDLIPPYLDQY 472

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 1e-04
 Identities = 37/270 (13%), Positives = 72/270 (26%), Gaps = 68/270 (25%)

Query: 309 QLQRKVIIVIAG-------VLPTIEVL---EQVANFGFNI-----------RHAYGMTEV 347
           +L+    ++I G        +  ++V    +      F I                M + 
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWV-ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204

Query: 348 LGPAIVRQWKPEGE-SSALDHEHEMTKHREGLNNLLIQGV---------DVKQQNTMKSV 397
           L   I   W    + SS +       +    L  LL             +V+      + 
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAE--LRRLLKSKPYENCLLVLLNVQNAKAWNAF 262

Query: 398 PHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDI 457
               K L  +  R   V              F +    T      +        D  K +
Sbjct: 263 NLSCKIL--LTTRFKQVT------------DFLSAATTTHISLDHHSMTLT--PDEVKSL 306

Query: 458 IISGAEI-ISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVP--------VAFVKLKEGRE 508
           ++   +     L  E +   NP+ L  +++ +    +++          V   KL    E
Sbjct: 307 LLKYLDCRPQDLPREVLTT-NPRRL--SIIAE---SIRDGLATWDNWKHVNCDKLTTIIE 360

Query: 509 ASPEELVTFCGDELPSCMVPRAIFFEDIPV 538
           +S   L      E        ++F     +
Sbjct: 361 SSLNVLEP---AEYRKMFDRLSVFPPSAHI 387

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 56.1 bits (136), Expect = 2e-08
 Identities = 38/162 (23%), Positives = 52/162 (32%), Gaps = 50/162 (30%)

Query: 417 GYFKNPKATEEAFRNGW----YHTGDLAVRNPDG---YV-----QMKDR--RKDIIISGA 462
           GY   P A  + F +      Y TGD+   + D    ++     Q+K R  R   +  G 
Sbjct: 387 GYLNRPDA--KGFCDINGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQR---LELG- 440

Query: 463 EIISSLEVEAVLLSNPKVLEAAVV------GKVDDQLKEVPVAFV------------KLK 504
                 EV  V+ S        V       G     L    V+FV             + 
Sbjct: 441 ------EVSEVIRSLSPTDIDVVTLLLNHPGTSKQFL----VSFVASSGAAVRGELRWIN 490

Query: 505 EGREASPEELVTFCGDELPSCMVPRAIFF-EDIPVNST-GKV 544
           E  +     L   C   LP+ MVP  I     IP+  T  K 
Sbjct: 491 ENYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRDTSAKT 532

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 44.5 bits (106), Expect = 7e-05
 Identities = 12/20 (60%), Positives = 13/20 (65%)

Query: 202 VNYTSGSTGDPKGVVYSHRG 221
           + YTSGSTG PKGV  S   
Sbjct: 180 LLYTSGSTGTPKGVRVSRHN 199

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	562
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	100.0
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	100.0
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	100.0
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.96
3lax_A	109	Phenylacetate-coenzyme A ligase; structural genomi	99.56
3gxs_A	109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	99.53
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	98.87
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	98.85
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	98.72
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	93.08
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	92.95
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	92.75
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	80.48

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=7.8e-81  Score=652.60  Aligned_cols=510  Identities=22%  Similarity=0.335  Sum_probs=400.9

Q ss_pred             cccCCCCCChHHHHHHHHHHcCCceEEEECC--------eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHH
Q 008535           13 ASANNVPLTPIDFLERAAHVYGDATSIIYGT--------VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALY   84 (562)
Q Consensus        13 ~~~~~~~~ti~~~l~~~a~~~p~~~a~~~~~--------~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~   84 (562)
                      .....+..|+.++|+++++.+|+++|+++.+        +++||+||.++++++|++|.+.|+++||+|+++++|+++++
T Consensus        12 p~~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~   91 (549)
T 3g7s_A           12 PSLYYPKISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYV   91 (549)
T ss_dssp             CCCCCCCCCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH
T ss_pred             CCCCcCCCCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHH
Confidence            4456688999999999999999999999877        88999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhccceEEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcc
Q 008535           85 KLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTC  164 (562)
Q Consensus        85 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (562)
                      +++|||+++|++++|+++.++.+++.+++++++++++|++....+.+........       ...++.++.         
T Consensus        92 ~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~-------~~~~~~~~~---------  155 (549)
T 3g7s_A           92 MTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTG-------VERVFVVGG---------  155 (549)
T ss_dssp             HHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSC-------CCEEEEETC---------
T ss_pred             HHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCC-------CcEEEEeCC---------
Confidence            9999999999999999999999999999999999999999988777766544322       223333221         


Q ss_pred             cccCCCCCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeee
Q 008535          165 SVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWT  244 (562)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~  244 (562)
                              ....+.++...............++|+++|+|||||||.||||.++|+++..........+++.++|+++..
T Consensus       156 --------~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~  227 (549)
T 3g7s_A          156 --------EVNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGC  227 (549)
T ss_dssp             --------SSSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECC
T ss_pred             --------CCcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEe
Confidence                    123455555544333222222334899999999999999999999999999999988889999999999999


Q ss_pred             cccccchhhHHHHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhcccccc--ccccceEEEEEeCCC
Q 008535          245 LDMFRCNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQ--NQLQRKVIIVIAGVL  322 (562)
Q Consensus       245 ~pl~~~~gl~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~--~~l~~l~~i~~~g~~  322 (562)
                      +|++|.+++...+.++..|+++++.+.+++..+++.++++++|+++++|++++.|++......  .+++++|.+++||++
T Consensus       228 ~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~  307 (549)
T 3g7s_A          228 MPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWP  307 (549)
T ss_dssp             SCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSC
T ss_pred             CcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCcc
Confidence            999999999888888999999999999999999999999999999999999999988765444  568899999999999


Q ss_pred             ChHHHHHHHHh-----cC---CeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCc
Q 008535          323 PTIEVLEQVAN-----FG---FNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTM  394 (562)
Q Consensus       323 l~~~~~~~~~~-----~~---~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~  394 (562)
                      +++++.+.+.+     ++   +++++.||+||++++++....           ........+|.|.++. .++|++.+++
T Consensus       308 l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~-----------~~~~~~~~~G~p~~~~-~~~i~d~~~g  375 (549)
T 3g7s_A          308 VAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPP-----------LRLDKSTTQGVPMSDI-ELKVISLEDG  375 (549)
T ss_dssp             CCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCG-----------GGGGGTTSCCEECTTC-EEEEECSSSC
T ss_pred             CCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCc-----------cccCcCCCccccCCCC-EEEEEeCCCC
Confidence            99999998874     45   889999999999877665421           1112345678888777 8888987788


Q ss_pred             ccccCCCCceeEEEEcchhhhhhhcCCchhhHhhh---ccc--eeeeCceeEEcCCCcEEEeccccceeecCCeEechHH
Q 008535          395 KSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAF---RNG--WYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLE  469 (562)
Q Consensus       395 ~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~---~~g--~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~  469 (562)
                      ++++.|  +.|||+|+|++++.||+++++.+.+.|   .+|  ||+|||+|++|+||.+++.||.||+||++|++|+|.+
T Consensus       376 ~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~e  453 (549)
T 3g7s_A          376 RELGVG--ESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFE  453 (549)
T ss_dssp             CEECTT--CCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHH
T ss_pred             cCCCCC--CceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHH
Confidence            888877  679999999999999999999999998   677  9999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCC--CCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchH
Q 008535          470 VEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEG--REASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQK  546 (562)
Q Consensus       470 iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~--~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r  546 (562)
                      ||++|.++|+|.+++|++.+++..++.++++|++.++  ...+.++++++++++|+.|++|+.+.+++ ||+|++||++|
T Consensus       454 IE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R  533 (549)
T 3g7s_A          454 LEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKRVREVEFVEELPRTASGKLLR  533 (549)
T ss_dssp             HHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTTTSCCHHHHHHHHHTTCC-----CCCCEEEECC---------
T ss_pred             HHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCccCcCCHHHHHHHHHHhccCcccceEEEEeccCCCCCCcCEeH
Confidence            9999999999999999999999889999999999876  56788999999999999999999877655 99999999999


Q ss_pred             HHHhhhhhhhcccc
Q 008535          547 FVLRGKVNATAVGW  560 (562)
Q Consensus       547 ~~l~~~~~~~~~~~  560 (562)
                      ++|++.+.......
T Consensus       534 ~~L~~~~~~~~~~~  547 (549)
T 3g7s_A          534 RLLREKEAEGHHHH  547 (549)
T ss_dssp             --------------
T ss_pred             HHHHHHhhcccccc
Confidence            99999988776443

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=7.1e-80  Score=643.47  Aligned_cols=504  Identities=23%  Similarity=0.345  Sum_probs=433.8

Q ss_pred             CCChHHHHHHHHHHcCCceEEEEC--CeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccce
Q 008535           19 PLTPIDFLERAAHVYGDATSIIYG--TVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAV   96 (562)
Q Consensus        19 ~~ti~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~   96 (562)
                      .+|+.++|.++++.+|+++|+++.  ++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus        21 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~Gav  100 (536)
T 3ni2_A           21 NLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAI  100 (536)
T ss_dssp             SCCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCE
T ss_pred             CCcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCE
Confidence            479999999999999999999985  578999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCc
Q 008535           97 LSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLD  176 (562)
Q Consensus        97 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (562)
                      ++|+++.++.+++.++++.++++++|++....+.+........        ..++.++...              .+...
T Consensus       101 ~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~--------~~~~~~~~~~--------------~~~~~  158 (536)
T 3ni2_A          101 ITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESD--------VKVMCVDSAP--------------DGCLH  158 (536)
T ss_dssp             EEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHT--------CEEEESSCCC--------------TTCEE
T ss_pred             EeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcC--------ceEEEecCCC--------------CCccC
Confidence            9999999999999999999999999999988777766544321        1233332211              12234


Q ss_pred             hhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHh----hcCCCCCCeeeeecccccchh
Q 008535          177 YNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQIS----RCDVRDMPVFLWTLDMFRCNG  252 (562)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~----~~~~~~~~~~l~~~pl~~~~g  252 (562)
                      +.++........ ......++|+++|+|||||||.||||.+||+++.........    .+.+..+|++++.+|++|.++
T Consensus       159 ~~~~~~~~~~~~-~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~  237 (536)
T 3ni2_A          159 FSELTQADENEA-PQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYA  237 (536)
T ss_dssp             THHHHTSCGGGC-CCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHH
T ss_pred             HHHHhhcccccc-ccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHH
Confidence            444444332221 222356789999999999999999999999999887766543    356789999999999999999


Q ss_pred             hHH-HHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHH
Q 008535          253 WCC-TWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQV  331 (562)
Q Consensus       253 l~~-~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~  331 (562)
                      +.. .+.++..|+++++.+.+++..+++.++++++|++.++|+++..|++........++++|.+++||+++++++.+.+
T Consensus       238 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~  317 (536)
T 3ni2_A          238 LNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTV  317 (536)
T ss_dssp             HHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHHHH
T ss_pred             HHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHHHH
Confidence            864 6777889999999999999999999999999999999999999999887777889999999999999999999999


Q ss_pred             H-hc-CCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEE
Q 008535          332 A-NF-GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMF  409 (562)
Q Consensus       332 ~-~~-~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v  409 (562)
                      + .+ ++++++.||+||++++++.+.....       .........+|.|.++. .++|+|.+++.+++.|  +.|||+|
T Consensus       318 ~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~-------~~~~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g--~~GEl~v  387 (536)
T 3ni2_A          318 RAKFPQARLGQGYGMTEAGPVLAMCLAFAK-------EPFDIKPGACGTVVRNA-EMKIVDPETGASLPRN--QPGEICI  387 (536)
T ss_dssp             HHHCTTSEEEEEEECGGGSSEEEECGGGSS-------SCCCCCTTCCCEECSSC-EEEEECTTTCCBCCTT--CCEEEEE
T ss_pred             HHHCCCCCccccccccccchhhhcccccCC-------ccccCCCCCeeEeCCCc-EEEEEeCCCCcCCCCC--CccEEEE
Confidence            8 45 8999999999999877665432111       01112335678888877 8888887788888877  7799999


Q ss_pred             cchhhhhhhcCCchhhHhhh-ccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEee
Q 008535          410 RANTVMLGYFKNPKATEEAF-RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGK  488 (562)
Q Consensus       410 ~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~  488 (562)
                      +|++++.||+++++.+.+.| .+|||+|||+|++|+||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.
T Consensus       388 ~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~  467 (536)
T 3ni2_A          388 RGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGL  467 (536)
T ss_dssp             ESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEE
T ss_pred             eCcccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEee
Confidence            99999999999999999999 58999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhh
Q 008535          489 VDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNA  555 (562)
Q Consensus       489 ~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~  555 (562)
                      +++..++.++++|+..++...+.++++++++++++.|++|+.+++++ ||+|++||++|++|++++.+
T Consensus       468 ~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~~  535 (536)
T 3ni2_A          468 KDEDAGEVPVAFVVKSEKSQATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLAG  535 (536)
T ss_dssp             EETTTEEEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC---
T ss_pred             ecCCCCceeEEEEEecCCCCCCHHHHHHHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhcc
Confidence            99999999999999988888889999999999999999999888665 99999999999999998864

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=7.4e-80  Score=640.00  Aligned_cols=503  Identities=26%  Similarity=0.380  Sum_probs=427.4

Q ss_pred             ccCCCCCChHHHHHHHHHHcCCceEEEECCe--eccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhh
Q 008535           14 SANNVPLTPIDFLERAAHVYGDATSIIYGTV--RFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVP   91 (562)
Q Consensus        14 ~~~~~~~ti~~~l~~~a~~~p~~~a~~~~~~--~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~   91 (562)
                      .......|+.++|+++++.+|+++|+++.+.  ++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+
T Consensus        10 ~~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~   89 (517)
T 3r44_A           10 DDDDKMKNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAA   89 (517)
T ss_dssp             --CGGGGCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred             CCcccccCHHHHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHH
Confidence            3444567999999999999999999999876  99999999999999999999999999999999999999999999999


Q ss_pred             hccceEEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCC
Q 008535           92 MAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFP  171 (562)
Q Consensus        92 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (562)
                      ++|++++|+++.++.+++.+++++++++++|++......+..........      ..++.+..                
T Consensus        90 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~------~~~~~~~~----------------  147 (517)
T 3r44_A           90 KLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPP------GTVTDWIG----------------  147 (517)
T ss_dssp             HHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCC------TTCCEEEE----------------
T ss_pred             HhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCc------cEEEEccC----------------
Confidence            99999999999999999999999999999999998877766654432211      01110000                


Q ss_pred             CCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccch
Q 008535          172 SGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCN  251 (562)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~  251 (562)
                        ...+.+........ .......++|+++|+|||||||.||||++||+++..........+++.++|++++.+|++|.+
T Consensus       148 --~~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~  224 (517)
T 3r44_A          148 --ADSLAERLRSAAAD-EPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVA  224 (517)
T ss_dssp             --HHHHHHHHHHCCCC-CCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHH
T ss_pred             --cccHHHHhhccCcC-CCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHH
Confidence              01122222222211 122235678999999999999999999999999999999988999999999999999999999


Q ss_pred             hhHHHHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHH
Q 008535          252 GWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQV  331 (562)
Q Consensus       252 gl~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~  331 (562)
                      ++...+..++.|+++++.+.+++..+++.++++++|++.++|++++.|.+..+....+++++|.+++||+++++++.+.+
T Consensus       225 ~~~~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~  304 (517)
T 3r44_A          225 ALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIY  304 (517)
T ss_dssp             HHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHH
T ss_pred             HHHHHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHH
Confidence            99887777779999999999999999999999999999999999999998877667788999999999999999999999


Q ss_pred             HhcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcc
Q 008535          332 ANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRA  411 (562)
Q Consensus       332 ~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~  411 (562)
                      .+.++++++.||+||+++.++......          .......+|.+.+.. .+++.+. ++..++.+   .|||+|+|
T Consensus       305 ~~~~~~~~~~YG~TE~~~~~~~~~~~~----------~~~~~~~~G~~~~~~-~~~i~d~-~~~~~~~g---~GEl~v~g  369 (517)
T 3r44_A          305 AAKNIEVVQGYALTESCGGGTLLLSED----------ALRKAGSAGRATMFT-DVAVRGD-DGVIREHG---EGEVVIKS  369 (517)
T ss_dssp             HHTTCEEEEEEECGGGTTCEEEECGGG----------TTTTTTCCBEECTTE-EEEEECT-TSCEESSE---EEEEEEEE
T ss_pred             HhcCCcEEEeecccccccceeecCCcc----------ccccCCCCCcCCCCe-EEEEECC-CCCCCCCC---CeEEEEeC
Confidence            977999999999999987666542211          112234556666665 6777775 56665554   59999999


Q ss_pred             hhhhhhhcCCchhhHhhhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCC
Q 008535          412 NTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDD  491 (562)
Q Consensus       412 ~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~  491 (562)
                      +.++.||+++|+.+.+.|.+|||+|||+|++|+||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++
T Consensus       370 ~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~  449 (517)
T 3r44_A          370 DILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDE  449 (517)
T ss_dssp             TTSCSEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEET
T ss_pred             cchhhhhCCChhhhHhhhcCCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEecccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhhc
Q 008535          492 QLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNATA  557 (562)
Q Consensus       492 ~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~~  557 (562)
                      ..++.++++| ..++...+.++++++++++|+.|++|+.+.+++ ||+|++||++|++|++.|.++.
T Consensus       450 ~~g~~~~a~v-~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~  515 (517)
T 3r44_A          450 KWGEIAAAIV-VADQNEVSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQYSATV  515 (517)
T ss_dssp             TTEEEEEEEE-EECTTTCCHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTCCBCHHHHHHHHGGGC
T ss_pred             ccCceEEEEE-ECCCCCCCHHHHHHHHHHhCCCCCCCCEEEEECCCCCCCCcCccHHHHHHHHHhhc
Confidence            8888888888 556666788999999999999999999988665 9999999999999999998753

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=1.8e-80  Score=648.34  Aligned_cols=520  Identities=32%  Similarity=0.467  Sum_probs=398.3

Q ss_pred             cccCCCCCChHHHHHHHHHHcCCceEEEE----CCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Q 008535           13 ASANNVPLTPIDFLERAAHVYGDATSIIY----GTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHF   88 (562)
Q Consensus        13 ~~~~~~~~ti~~~l~~~a~~~p~~~a~~~----~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~l   88 (562)
                      ..+...+.|+.++|+++++.+|+++|+.+    .++++||+||.+++.++|++|.+.|+++||+|+++++|++++++++|
T Consensus        11 ~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l   90 (541)
T 1v25_A           11 STMMDEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYF   90 (541)
T ss_dssp             CCBCCCCCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred             cccccCCCCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Confidence            34445567999999999999999999994    45789999999999999999999999999999999999999999999


Q ss_pred             HhhhccceEEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccC
Q 008535           89 AVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVAN  168 (562)
Q Consensus        89 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (562)
                      ||+++|++++|+++.++.+++.++++.++++++|++.+..+.+......++.      ...++.++...           
T Consensus        91 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-----------  153 (541)
T 1v25_A           91 AVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKT------VQHFVVMDEKA-----------  153 (541)
T ss_dssp             HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSS------CCEEEESSSCC-----------
T ss_pred             HHHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCC------ccEEEEecCCC-----------
Confidence            9999999999999999999999999999999999998877766554433211      22333333211           


Q ss_pred             CCCCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHH--HhhcCCCCCCeeeeecc
Q 008535          169 NFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQ--ISRCDVRDMPVFLWTLD  246 (562)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~--~~~~~~~~~~~~l~~~p  246 (562)
                        +.+...+.++.......    ....++++++|+|||||||.||||.+||+++.......  ...+++.++|++++.+|
T Consensus       154 --~~~~~~~~~~~~~~~~~----~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p  227 (541)
T 1v25_A          154 --PEGYLAYEEALGEEADP----VRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVP  227 (541)
T ss_dssp             --CTTCEEHHHHCCSCCCC----CCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSC
T ss_pred             --CcccccHHHHhhccCCc----ccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEecc
Confidence              00123344443322211    23456899999999999999999999999987766552  34567889999999999


Q ss_pred             cccchhhHHHHHhHhhceEEEEecc-CCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChH
Q 008535          247 MFRCNGWCCTWAMAAVGGINVCIRT-VSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTI  325 (562)
Q Consensus       247 l~~~~gl~~~~~~~~~g~~~v~~~~-~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~  325 (562)
                      ++|.+++...+.++..|+++++.+. +++..+++.++++++|+++++|+++..|++.......+++++|.+++||+++++
T Consensus       228 ~~h~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~  307 (541)
T 1v25_A          228 MFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPR  307 (541)
T ss_dssp             TTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCH
T ss_pred             chhhhHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCH
Confidence            9999999777888999999998764 799999999999999999999999999998776556678999999999999999


Q ss_pred             HHHHHHHhcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCcee
Q 008535          326 EVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLG  405 (562)
Q Consensus       326 ~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~G  405 (562)
                      ++.+.++.+++++++.||+||++++++............ ..........+|.|.++. .++|+|. ++++++.++++.|
T Consensus       308 ~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~G~p~~~~-~~~i~d~-~g~~~~~~~~~~G  384 (541)
T 1v25_A          308 SLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLS-EEEKLTLKAKTGLPIPLV-RLRVADE-EGRPVPKDGKALG  384 (541)
T ss_dssp             HHHHHHHHTTCEEEEEEECGGGSSEEEECCCCGGGTTSC-HHHHHHHHTSCBEECTTC-EEEEECT-TSCBCCSSSCCCE
T ss_pred             HHHHHHHHhCCceeecccccccccceecccccccccccC-ccccccccCCCCCcCCCc-EEEEECC-CCCCCCCCCCcce
Confidence            999999777999999999999987766543221100000 000112345678888777 7888886 6777776555679


Q ss_pred             EEEEcchhhhhhhcCCchhhHhhhc-cceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEE
Q 008535          406 EVMFRANTVMLGYFKNPKATEEAFR-NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAA  484 (562)
Q Consensus       406 el~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~  484 (562)
                      ||+|+||.++.||+++++.+.+.|. +|||+|||+|++|+||++++.||.||+||++|++|+|.+||++|.++|+|.+++
T Consensus       385 El~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~  464 (541)
T 1v25_A          385 EVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAA  464 (541)
T ss_dssp             EEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------C
T ss_pred             EEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEE
Confidence            9999999999999999999999997 899999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhc-cCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhhccc
Q 008535          485 VVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGD-ELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNATAVG  559 (562)
Q Consensus       485 v~~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~-~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~~~~  559 (562)
                      |++.+++..++.++++|++. +...+.+++++++++ +|+.|++|+.+.+++ ||+|++||++|++|++.|.+..+|
T Consensus       465 Vv~~~~~~~~~~~~a~vv~~-~~~~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~  540 (541)
T 1v25_A          465 VVAIPHPKWQERPLAVVVPR-GEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNYYGG  540 (541)
T ss_dssp             EEEEECSSSSEEEEECC--------------------CCCTTTSCSBC--------------CCTTHHHHSTTSSCC
T ss_pred             EEEecCCCcCceEEEEEEEC-CCCCCHHHHHHHHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHHHHHHHhhCC
Confidence            99999999899999999876 444567889999999 899999999888655 999999999999999999877665

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=9.3e-79  Score=635.03  Aligned_cols=501  Identities=23%  Similarity=0.314  Sum_probs=424.2

Q ss_pred             CCCCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccce
Q 008535           17 NVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAV   96 (562)
Q Consensus        17 ~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~   96 (562)
                      +...|+.++|+++++.+|+++|+++.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus        22 ~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~  101 (539)
T 1mdb_A           22 WAGETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGAL  101 (539)
T ss_dssp             SCSCCHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCE
T ss_pred             ccCCCHHHHHHHHHHHCCCCEEEEeCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeE
Confidence            34579999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHhhCCceEEEEeccch-----HHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCC
Q 008535           97 LSALNTRLDSATLASILRQLEAKIIFVDYQFV-----EVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFP  171 (562)
Q Consensus        97 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (562)
                      ++|+++.++.+++.++++.++++++|++....     .........++.      ...++..++..              
T Consensus       102 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~--------------  161 (539)
T 1mdb_A          102 PVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPT------LKNIIVAGEAE--------------  161 (539)
T ss_dssp             EEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTT------CCCEEEESCCT--------------
T ss_pred             EecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCC------ccEEEEcCCcc--------------
Confidence            99999999999999999999999999987642     222222222111      22222222110              


Q ss_pred             CCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccch
Q 008535          172 SGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCN  251 (562)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~  251 (562)
                          .+.++...... ........++|+++++|||||||.||||.++|+++..........+++.++|++++.+|++|.+
T Consensus       162 ----~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~  236 (539)
T 1mdb_A          162 ----EFLPLEDLHTE-PVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNY  236 (539)
T ss_dssp             ----TSEEGGGCCCC-CCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHH
T ss_pred             ----chhhhhhcccc-ccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccc
Confidence                01111111111 1111234678999999999999999999999999999888888888999999999999999999


Q ss_pred             hhHH--HHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHH
Q 008535          252 GWCC--TWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLE  329 (562)
Q Consensus       252 gl~~--~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~  329 (562)
                      ++..  .+.++..|+++++.+.+++..+++.++++++|+++++|+++..|++.......+++++|.+++||+++++++.+
T Consensus       237 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~  316 (539)
T 1mdb_A          237 PLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAAR  316 (539)
T ss_dssp             HHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHT
T ss_pred             hhhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHH
Confidence            9874  78888999999999889999999999999999999999999999987765667789999999999999999999


Q ss_pred             HHH-hcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEE
Q 008535          330 QVA-NFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVM  408 (562)
Q Consensus       330 ~~~-~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~  408 (562)
                      +++ .+++++++.||+||++..+...           ..........+|.|.++...++|+|. ++++++.|  +.|||+
T Consensus       317 ~~~~~~~~~~~~~YG~TE~~~~~~~~-----------~~~~~~~~~~~G~p~~~~~~~~i~d~-~~~~~~~g--~~GEl~  382 (539)
T 1mdb_A          317 RVKAVFGCTLQQVFGMAEGLVNYTRL-----------DDPEEIIVNTQGKPMSPYDESRVWDD-HDRDVKPG--ETGHLL  382 (539)
T ss_dssp             THHHHTCSEEEEEEECTTSCEEECCT-----------TSCHHHHHHCCCEESSTTCEEEEECT-TSCBCCTT--CCEEEE
T ss_pred             HHHHHhCCcEEEEEcCCCCcccccCC-----------CCcHHhcCCCCCcccCCCceEEEECC-CCCCCcCC--CcceEE
Confidence            998 5699999999999964322211           00111233567877766556888886 67777776  779999


Q ss_pred             EcchhhhhhhcCCchhhHhhh-ccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEe
Q 008535          409 FRANTVMLGYFKNPKATEEAF-RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVG  487 (562)
Q Consensus       409 v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~  487 (562)
                      |+|++++.||+++++.+.+.| .+|||+|||+|++|+||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++
T Consensus       383 v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~  462 (539)
T 1mdb_A          383 TRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVS  462 (539)
T ss_dssp             EECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEE
T ss_pred             eeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEe
Confidence            999999999999999999999 4899999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhcc-CCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhhc
Q 008535          488 KVDDQLKEVPVAFVKLKEGREASPEELVTFCGDE-LPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNATA  557 (562)
Q Consensus       488 ~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~-l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~~  557 (562)
                      .+++..++.++++|++.. ...+.++++++++++ ++.|++|+.+.+++ ||+|++||++|++|++.+.++.
T Consensus       463 ~~~~~~g~~~~a~vv~~~-~~~~~~~l~~~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i  533 (539)
T 1mdb_A          463 MPDQFLGERSCVFIIPRD-EAPKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKL  533 (539)
T ss_dssp             EEETTTEEEEEEEEEESS-SCCCHHHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHHH
T ss_pred             ccccccCceEEEEEEECC-CCCCHHHHHHHHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHHHH
Confidence            999988999999999873 456789999999997 99999999988665 9999999999999999987764

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=5.2e-79  Score=631.48  Aligned_cols=491  Identities=22%  Similarity=0.289  Sum_probs=420.4

Q ss_pred             HHHHHHHHHcCCceEEE---ECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEEec
Q 008535           24 DFLERAAHVYGDATSII---YGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSAL  100 (562)
Q Consensus        24 ~~l~~~a~~~p~~~a~~---~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l  100 (562)
                      ++|++.++.+|++.++.   +.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|+
T Consensus         4 ~l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl   83 (503)
T 4fuq_A            4 NLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPL   83 (503)
T ss_dssp             CHHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEEC
T ss_pred             hHHHHHHHhCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEec
Confidence            57889999999998877   456889999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCchhhh
Q 008535          101 NTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDL  180 (562)
Q Consensus       101 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (562)
                      ++.++.+++.+++++++++++|++....+.+........        ..+..+....                ...+...
T Consensus        84 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~--------~~~~~~~~~~----------------~~~~~~~  139 (503)
T 4fuq_A           84 NTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVG--------ATVETLGPDG----------------RGSLTDA  139 (503)
T ss_dssp             CTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHT--------CEEEECCTTS----------------CSHHHHH
T ss_pred             CCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcC--------ceEEEecCCc----------------ccccchh
Confidence            999999999999999999999999876655544433321        1222221111                0111111


Q ss_pred             hhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHH-HHHh
Q 008535          181 LEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCC-TWAM  259 (562)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~-~~~~  259 (562)
                      ....... .......++|+++|+|||||||.||||.++|+++..........+++.++|++++.+|++|.+|+.. .+.+
T Consensus       140 ~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~  218 (503)
T 4fuq_A          140 AAGASEA-FATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVT  218 (503)
T ss_dssp             HHTSCSC-CCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHH
T ss_pred             hhcCCCC-cCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHH
Confidence            1111111 1122356789999999999999999999999999999999989999999999999999999999764 6677


Q ss_pred             HhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHH-hcCCee
Q 008535          260 AAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVA-NFGFNI  338 (562)
Q Consensus       260 ~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~-~~~~~l  338 (562)
                      ++.|+++++.+.+++..+++.++  ++|+++++|+++..|++........++++|.+++||++++++..+.|. .++.++
T Consensus       219 l~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~  296 (503)
T 4fuq_A          219 LFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTGHAV  296 (503)
T ss_dssp             HHTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCE
T ss_pred             HHhCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHhCCCc
Confidence            88899999999999999999998  899999999999999998877777789999999999999999999998 559999


Q ss_pred             eccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhhhhhh
Q 008535          339 RHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGY  418 (562)
Q Consensus       339 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy  418 (562)
                      ++.||+||++..+....            ........+|.|.++. .++|+|.+++++++.|  +.|||+|+|++++.||
T Consensus       297 ~~~YG~TE~~~~~~~~~------------~~~~~~~~~G~p~~~~-~~~i~d~~~g~~~~~g--~~GEl~v~g~~v~~GY  361 (503)
T 4fuq_A          297 LERYGMTETNMNTSNPY------------DGDRVPGAVGPALPGV-SARVTDPETGKELPRG--DIGMIEVKGPNVFKGY  361 (503)
T ss_dssp             EECCEETTTEECBCCCS------------SSCCCTTEEEEBCTTC-EEEEECTTTCCBCCTT--CCEEEEEESTTSCCCB
T ss_pred             cceEcccccCcccccCC------------CCCCcCCccccCCCCe-EEEEEECCCCCCCcCC--CceEEEEECCchhhhh
Confidence            99999999976543211            1112234577777777 8888887788888877  7799999999999999


Q ss_pred             cCCchhhHhhhc-cceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCCCCCcee
Q 008535          419 FKNPKATEEAFR-NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVP  497 (562)
Q Consensus       419 ~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~  497 (562)
                      +++++.+.+.|. +|||+|||+|++|+||.+++.||.||+||++|++|+|.+||++|.++|+|.+++|++++++..++.+
T Consensus       362 ~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~  441 (503)
T 4fuq_A          362 WRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGV  441 (503)
T ss_dssp             TTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEE
T ss_pred             cCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCcee
Confidence            999999999996 8999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhh
Q 008535          498 VAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNAT  556 (562)
Q Consensus       498 v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~  556 (562)
                      +++|+..++...+.++++++++++|+.|++|+.+.+++ ||+|++||++|++|++.|.+.
T Consensus       442 ~a~v~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~  501 (503)
T 4fuq_A          442 TAVVVRDKGATIDEAQVLHGLDGQLAKFKMPKKVIFVDDLPRNTMGKVQKNVLRETYKDI  501 (503)
T ss_dssp             EEEEEECTTCCCCHHHHHHHHBTTBCGGGCCSEEEEESCCCBCTTSCBCHHHHHHHTTTT
T ss_pred             EEEEEeCCCCCCCHHHHHHHHHhhcccCCCCCEEEEECCCCCCcccceeHHHHHHHHHHh
Confidence            99999998888889999999999999999999988655 999999999999999998764

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=3.1e-79  Score=635.29  Aligned_cols=498  Identities=23%  Similarity=0.343  Sum_probs=331.1

Q ss_pred             CCCCCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccc
Q 008535           16 NNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGA   95 (562)
Q Consensus        16 ~~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~   95 (562)
                      ..+++|+.++|+++++.+|+++|+++.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|+
T Consensus         2 s~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga   81 (509)
T 3ivr_A            2 SLHDFTLADVYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGA   81 (509)
T ss_dssp             CTTCCCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTC
T ss_pred             CCCcCCHHHHHHHHHHHCCCceEEEECCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCC
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCC
Q 008535           96 VLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSL  175 (562)
Q Consensus        96 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (562)
                      +++|+++.++.+++.+++++++++++|++....+.+......+..      ...++.+++..                 .
T Consensus        82 ~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-----------------~  138 (509)
T 3ivr_A           82 ILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGG------VKKAYAIGDGS-----------------G  138 (509)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSS------CCEEEESSCCC-----------------S
T ss_pred             EEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCC------ceEEEEcCCCC-----------------c
Confidence            999999999999999999999999999999887765444332221      23334333211                 1


Q ss_pred             chhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHH
Q 008535          176 DYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCC  255 (562)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~  255 (562)
                      .+.++...............++|+++|+|||||||.||||.++|+++..........+++.++|++++.+|++|.+++..
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~  218 (509)
T 3ivr_A          139 PFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGL  218 (509)
T ss_dssp             SCEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHH
T ss_pred             ChhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHH
Confidence            12222221111111223356789999999999999999999999999999999989999999999999999999999998


Q ss_pred             HHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHH-hc
Q 008535          256 TWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVA-NF  334 (562)
Q Consensus       256 ~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~-~~  334 (562)
                      .+.+++.+++.++...+++..+++.++++++|+++++|+++..|++..  ....++++|.++.+|++   +..+.+. .+
T Consensus       219 ~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l~~lr~~~~~g~~---~~~~~~~~~~  293 (509)
T 3ivr_A          219 MLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQLASLRAVTGLDTP---ETIERFEATC  293 (509)
T ss_dssp             HHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGGTTCCEEEEECCH---HHHHHHHHHC
T ss_pred             HHHHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccchhhhheecccCCh---HHHHHHHHhc
Confidence            888888888888777899999999999999999999999999998876  44668899999999987   6677776 45


Q ss_pred             -CCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchh
Q 008535          335 -GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANT  413 (562)
Q Consensus       335 -~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~  413 (562)
                       ++++++.||+||++++++......             ....+|.|.++. .++|+|. ++++++.|  +.|||+|+|++
T Consensus       294 ~~~~~~~~YG~TE~~~~~~~~~~~~-------------~~~~~G~p~~~~-~~~i~d~-~~~~~~~g--~~GEl~v~g~~  356 (509)
T 3ivr_A          294 PNATFWATFGQSETSGLSTFAPYRD-------------RPKSAGRPLFWR-TVAVVDA-EDRPLPPG--EVGEIVLRGPT  356 (509)
T ss_dssp             TTCEEEEEEEEGGGTEEEEEEEGGG-------------STTSCCEECTTC-EEEEECT-TSCBCCTT--CCEEEEEESTT
T ss_pred             CCCeEEcccCccccccccccCcccc-------------CCCcccccCCCc-EEEEECC-CCCCCCCC--CceEEEEecCC
Confidence             899999999999987766543211             112368887777 8888886 57877776  77999999999


Q ss_pred             hhhhhcCCchhhHhhhccceeeeCceeEEcCCCcEEEeccc--cceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCC
Q 008535          414 VMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRR--KDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDD  491 (562)
Q Consensus       414 ~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~--~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~  491 (562)
                      ++.||+++++.+.+.|.+|||+|||+|++|+||++++.||.  +|+||++|++|+|.+||++|.++|+|.+++|++.+++
T Consensus       357 ~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~  436 (509)
T 3ivr_A          357 VFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDP  436 (509)
T ss_dssp             SCCEETTCHHHHHHHTGGGSEEEEEEEEECTTSCEEEEEEC---------------------------------------
T ss_pred             ccccccCCHHHhHHHhhcCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEecccc
Confidence            99999999999999999999999999999999999999999  9999999999999999999999999999999999999


Q ss_pred             CCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhhcc
Q 008535          492 QLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNATAV  558 (562)
Q Consensus       492 ~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~~~  558 (562)
                      ..++.++++|++.++...+.++++++++++++.|++|+.+.+++ ||+|++||++|++|++.+.+...
T Consensus       437 ~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~~~  504 (509)
T 3ivr_A          437 QWSEAIKAVCVCKPGESIAADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQEGH  504 (509)
T ss_dssp             --------------------------------------------------------------------
T ss_pred             ccCcEEEEEEEeCCCCCCCHHHHHHHHHhhCcccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhccc
Confidence            98999999999888777788899999999999999999887655 99999999999999999887653

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=7e-78  Score=623.98  Aligned_cols=483  Identities=27%  Similarity=0.356  Sum_probs=407.8

Q ss_pred             CChHHHHHHHHHHcCCceEEEEC--CeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceE
Q 008535           20 LTPIDFLERAAHVYGDATSIIYG--TVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVL   97 (562)
Q Consensus        20 ~ti~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~   97 (562)
                      +|+.++|+++++.+|+++|+.+.  ++++||+||.+++.++|++|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus         2 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~   81 (504)
T 1t5h_X            2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP   81 (504)
T ss_dssp             CCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred             CcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEE
Confidence            48999999999999999999988  7899999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhhCCceEEEE--eccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCC
Q 008535           98 SALNTRLDSATLASILRQLEAKIIFV--DYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSL  175 (562)
Q Consensus        98 v~l~~~~~~~~l~~~l~~~~~~~ii~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (562)
                      +|+++.++.+++.+++++++++++++  +....+.+..   ...       ...++.+                      
T Consensus        82 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~---~~~-------~~~~~~~----------------------  129 (504)
T 1t5h_X           82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQ---SGS-------GARIIFL----------------------  129 (504)
T ss_dssp             EEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHH---HCC-------CCEEEEG----------------------
T ss_pred             EecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhh---ccc-------cceeEEe----------------------
Confidence            99999999999999999999999999  7664443311   111       0111111                      


Q ss_pred             chhhhhhccc----CccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCC--CCCCeeeeeccccc
Q 008535          176 DYNDLLEMGK----ADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDV--RDMPVFLWTLDMFR  249 (562)
Q Consensus       176 ~~~~~~~~~~----~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~--~~~~~~l~~~pl~~  249 (562)
                        .++.....    ..........++++++|+|||||||.||||.++|+++..........+++  .+.+++++.+|++|
T Consensus       130 --~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~  207 (504)
T 1t5h_X          130 --GDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYH  207 (504)
T ss_dssp             --GGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTS
T ss_pred             --cchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhh
Confidence              11111100    00001123457899999999999999999999999999888887777887  88999999999999


Q ss_pred             chhhH-HHHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccc--cccccccceEEEEEeCCCChHH
Q 008535          250 CNGWC-CTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASA--SDQNQLQRKVIIVIAGVLPTIE  326 (562)
Q Consensus       250 ~~gl~-~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~--~~~~~l~~l~~i~~~g~~l~~~  326 (562)
                      .+++. ..+.++..|+++++.+.+++..+++.++++++|+++++|++++.|++...  .....++++|.+++||++++++
T Consensus       208 ~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~  287 (504)
T 1t5h_X          208 VVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDA  287 (504)
T ss_dssp             HHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHH
T ss_pred             cchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHH
Confidence            99984 57788889999999999999999999999999999999999999988652  2345688999999999999999


Q ss_pred             HHHHHH-hcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCc--ccccCCCCc
Q 008535          327 VLEQVA-NFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTM--KSVPHDGKT  403 (562)
Q Consensus       327 ~~~~~~-~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~--~~~~~~~~~  403 (562)
                      +.+.++ .++.++++.||+||++ .+....              .......|.|.++. .+++++.+.+  ++++.|  +
T Consensus       288 ~~~~~~~~~~~~~~~~YG~TE~~-~~~~~~--------------~~~~~~~g~p~~~~-~~~i~~~~~~~~~~~~~g--~  349 (504)
T 1t5h_X          288 VLETVHQHLPGEKVNIYGTTEAM-NSLYMR--------------QPKTGTEMAPGFFS-EVRIVRIGGGVDEIVANG--E  349 (504)
T ss_dssp             HHHHHHHHCCSEEEEEEEETTTE-EEEEEE--------------SCSSSSEEBCCTTC-CEEEECTTSCTTCBCCTT--C
T ss_pred             HHHHHHHhcCcceeeeecccccc-cccccc--------------CCCCCccccCCCCC-ceeEEeccCCCCCcCCCC--C
Confidence            999998 5588999999999983 222111              11223556666666 7788776432  566655  7


Q ss_pred             eeEEEEc-chhhhhhhcCCchhhHhhhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCcee
Q 008535          404 LGEVMFR-ANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLE  482 (562)
Q Consensus       404 ~Gel~v~-~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~  482 (562)
                      .|||+|+ |+.++.||+++++.+.+.|.+|||+|||+|++|+||.+++.||.||+||++|++|+|.+||++|.++|+|.+
T Consensus       350 ~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~  429 (504)
T 1t5h_X          350 EGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTE  429 (504)
T ss_dssp             CEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEE
T ss_pred             cceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcce
Confidence            7999999 999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhc-cCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhh
Q 008535          483 AAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGD-ELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVN  554 (562)
Q Consensus       483 ~~v~~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~-~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~  554 (562)
                      ++|++.+++..++.++++|++.++...+.+++++++++ +|+.|++|+.+++++ ||+|++||++|++|++.|.
T Consensus       430 a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~  503 (504)
T 1t5h_X          430 VVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVS  503 (504)
T ss_dssp             EEEEEEECSSSSEEEEEEEEECTTCCCCHHHHHHHHHTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred             EEEEEeecCCCCcEEEEEEEecCCcCcCHHHHHHHHhhccCcccccceEEEEhhhCCCCCCCCEeHHHHHHHhc
Confidence            99999999999999999999988777788999999998 999999999988765 9999999999999999875

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=2.5e-79  Score=640.03  Aligned_cols=505  Identities=22%  Similarity=0.313  Sum_probs=335.8

Q ss_pred             CCCCCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccc
Q 008535           16 NNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGA   95 (562)
Q Consensus        16 ~~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~   95 (562)
                      .+...|+.++|+++++.+|+++|+++.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|+
T Consensus        26 ~~~~~tl~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Ga  105 (544)
T 3o83_A           26 YWIDQPLTRILTVGVQSHPHSLAIICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGV  105 (544)
T ss_dssp             SCCCCCTTHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHhCCCceEEEcCCCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCc
Confidence            35568999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEecCCCCCHHHHHHHHhhCCceEEEEeccch-----HHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCC
Q 008535           96 VLSALNTRLDSATLASILRQLEAKIIFVDYQFV-----EVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNF  170 (562)
Q Consensus        96 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (562)
                      +++|+++.++.+++.+++++++++++|++....     ............      ...++.+....             
T Consensus       106 v~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-------------  166 (544)
T 3o83_A          106 VVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLS------PEIILMLNHQA-------------  166 (544)
T ss_dssp             EEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCC------CSEEEEETCCT-------------
T ss_pred             EEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccC------cceEEEecCCc-------------
Confidence            999999999999999999999999999998654     222222221111      12222222111             


Q ss_pred             CCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccc
Q 008535          171 PSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRC  250 (562)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~  250 (562)
                        ....+.++............+..++|+++|+|||||||.||||+++|+++..........+++.++|++++.+|++|.
T Consensus       167 --~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~  244 (544)
T 3o83_A          167 --TDFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHN  244 (544)
T ss_dssp             --TSEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSH
T ss_pred             --cccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceE
Confidence              012233333333222222234567899999999999999999999999999999999899999999999999999999


Q ss_pred             hhhHH--HHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHH
Q 008535          251 NGWCC--TWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVL  328 (562)
Q Consensus       251 ~gl~~--~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~  328 (562)
                      +++..  .+.++..|+++++.+.+++..+++.++++++|+++++|+++..|++........++++|.+++||+++++++.
T Consensus       245 ~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~  324 (544)
T 3o83_A          245 FMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLA  324 (544)
T ss_dssp             HHHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHH
T ss_pred             eecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHH
Confidence            99874  7788889999999999999999999999999999999999999998877667789999999999999999999


Q ss_pred             HHHH-hcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEE
Q 008535          329 EQVA-NFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEV  407 (562)
Q Consensus       329 ~~~~-~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel  407 (562)
                      +.++ .+++++++.||+||++..+....           .........+|.|..+...++|+|. ++++++.|  +.|||
T Consensus       325 ~~~~~~~~~~~~~~YG~TE~~~~~~~~~-----------~~~~~~~~~~G~p~~~~~~~~i~d~-~~~~~~~g--~~GEl  390 (544)
T 3o83_A          325 RQVPEVLNCKLQQVFGMAEGLVNYTRLD-----------DSDEQIFTTQGRPISSDDEIKIVDE-QYREVPEG--EIGML  390 (544)
T ss_dssp             THHHHHHCSEEEEEEECTTSCEEECCTT-----------SCHHHHHHCCCEESCTTCEEEEECT-TSCBCCTT--CCEEE
T ss_pred             HHHHHHhCCcEEeeeccccccceeecCC-----------CchhhccCCCceecCCCcEEEEECC-CCCCCCCC--CeeEE
Confidence            9998 45999999999999874433211           1112223466777533337888884 77888776  77999


Q ss_pred             EEcchhhhhhhcCCchhhHhhh-ccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEE
Q 008535          408 MFRANTVMLGYFKNPKATEEAF-RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVV  486 (562)
Q Consensus       408 ~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~  486 (562)
                      +|+|++++.||+++++.+.+.| .+|||+|||+|++|+||.+++.||.||+||++|++|+|.+||++|.++|+|.+++|+
T Consensus       391 ~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv  470 (544)
T 3o83_A          391 ATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALV  470 (544)
T ss_dssp             EEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC-------------------------------
T ss_pred             EEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEE
Confidence            9999999999999999999999 589999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhc-cCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhh
Q 008535          487 GKVDDQLKEVPVAFVKLKEGREASPEELVTFCGD-ELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNAT  556 (562)
Q Consensus       487 ~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~-~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~  556 (562)
                      +.+++..++.++++|+..+ ...+.+++++++++ .++.|++|+.+.+++ ||+|++||++|++|++++.+.
T Consensus       471 ~~~~~~~g~~~~a~vv~~~-~~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~  541 (544)
T 3o83_A          471 AIVDEQFGEKSCAFIVSRN-PELKAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNTS  541 (544)
T ss_dssp             ------------------------------------------------------------------------
T ss_pred             eccCCCCCceEEEEEEeCC-CCCCHHHHHHHHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhhc
Confidence            9999999999999998766 34567789999998 799999999888655 999999999999999998764

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=1e-77  Score=627.93  Aligned_cols=504  Identities=21%  Similarity=0.255  Sum_probs=426.4

Q ss_pred             CChHH-HHHHHHHHcCCceEEEE--CCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccce
Q 008535           20 LTPID-FLERAAHVYGDATSIIY--GTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAV   96 (562)
Q Consensus        20 ~ti~~-~l~~~a~~~p~~~a~~~--~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~   96 (562)
                      .|+.+ +|.++++.+ +++|+++  .++++||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus        25 ~~l~~~~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav  103 (548)
T 2d1s_A           25 AGTQLRKYMERYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVG  103 (548)
T ss_dssp             HHHHHHHHHHHHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCE
T ss_pred             CcHHHHHHHhhhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCE
Confidence            47889 898889999 9999998  4688999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCc
Q 008535           97 LSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLD  176 (562)
Q Consensus        97 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (562)
                      ++|+++.++.+++.+++++++++++|++....+.+......++.      ...++.++....            ..+...
T Consensus       104 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~------------~~~~~~  165 (548)
T 2d1s_A          104 VAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTT------IKTIVILDSKVD------------YRGYQC  165 (548)
T ss_dssp             EEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTT------CCEEEETTCSSC------------BTTBCB
T ss_pred             EeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCC------CCEEEEeCCccc------------cccccc
Confidence            99999999999999999999999999999887766554433221      123333332110            011234


Q ss_pred             hhhhhhcccCc-cccCCCC-----CCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhh---cCCCCCCeeeeeccc
Q 008535          177 YNDLLEMGKAD-FEMMQPN-----HECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISR---CDVRDMPVFLWTLDM  247 (562)
Q Consensus       177 ~~~~~~~~~~~-~~~~~~~-----~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~---~~~~~~~~~l~~~pl  247 (562)
                      +.++....... .......     .++|+++|+|||||||.||||.+||+++..........   +++.++|++++.+|+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~  245 (548)
T 2d1s_A          166 LDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPF  245 (548)
T ss_dssp             HHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCT
T ss_pred             HHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccH
Confidence            55554432111 1110111     23899999999999999999999999998887777666   678899999999999


Q ss_pred             ccchhhHHHHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHH
Q 008535          248 FRCNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEV  327 (562)
Q Consensus       248 ~~~~gl~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~  327 (562)
                      +|.+++...+...+.|+++++.+.+++..+++.++++++|+++++|++++.|++........++++|.+++||+++++++
T Consensus       246 ~h~~g~~~~~~~~l~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~  325 (548)
T 2d1s_A          246 HHGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEV  325 (548)
T ss_dssp             TSHHHHHHHHHHHHTTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCCHHH
T ss_pred             HHHHHHHHHHHHHhcCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCccCCHHH
Confidence            99999876444434999999988899999999999999999999999999999877666667899999999999999999


Q ss_pred             HHHHH-hc-CCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCcee
Q 008535          328 LEQVA-NF-GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLG  405 (562)
Q Consensus       328 ~~~~~-~~-~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~G  405 (562)
                      .+.++ .+ +.++++.||+||+++.++.....            ......+|.|.++. .++|++.+++++++.|  +.|
T Consensus       326 ~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~------------~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g--~~G  390 (548)
T 2d1s_A          326 GEAVARRFNLPGVRQGYGLTETTSAIIITPEG------------DDKPGASGKVVPLF-KAKVIDLDTKKSLGPN--RRG  390 (548)
T ss_dssp             HHHHHHHTTCSCCEEEEECGGGSSEEEECCTT------------CCCTTCCBEECTTC-EEEEECTTTCCBCCTT--CCE
T ss_pred             HHHHHHHcCCCceeeccccccccceeeecCcc------------cCCCCCCCccCCCc-eEEEEeCCcCccCCCC--CCe
Confidence            99998 45 67899999999998766552110            11234667777776 7888886688888776  779


Q ss_pred             EEEEcchhhhhhhcCCchhhHhhh-ccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEE
Q 008535          406 EVMFRANTVMLGYFKNPKATEEAF-RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAA  484 (562)
Q Consensus       406 el~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~  484 (562)
                      ||+|+|++++.||+++++.+.+.| .+|||+|||+|++|+||++++.||.||+||++|++|+|.+||++|.++|+|.+++
T Consensus       391 El~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~  470 (548)
T 2d1s_A          391 EVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAG  470 (548)
T ss_dssp             EEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEE
T ss_pred             EEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEE
Confidence            999999999999999999999999 5899999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCc-EEEeec-ccCCCCCcchHHHHhhhhhhhc
Q 008535          485 VVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPR-AIFFED-IPVNSTGKVQKFVLRGKVNATA  557 (562)
Q Consensus       485 v~~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~-~i~~~~-lP~t~~GKv~r~~l~~~~~~~~  557 (562)
                      |++.+++..++.++++|+++++...+.++++++++++++.|++|+ .+.+++ ||+|++||++|++|++.+.+.-
T Consensus       471 V~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i  545 (548)
T 2d1s_A          471 VAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKKPV  545 (548)
T ss_dssp             EEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHHSCC
T ss_pred             EEEEEcCCCCeeeEEEEEEcCCCCCCHHHHHHHHHHhccccccccccEEEccCCCCCCcchhHHHHHHHHHhhhh
Confidence            999999988999999999988777788999999999999999999 777655 9999999999999999987654

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=1.9e-79  Score=642.20  Aligned_cols=513  Identities=21%  Similarity=0.299  Sum_probs=335.2

Q ss_pred             ccCCCCCChHHHHHHHHHHcCCceEEE---E--CCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Q 008535           14 SANNVPLTPIDFLERAAHVYGDATSII---Y--GTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHF   88 (562)
Q Consensus        14 ~~~~~~~ti~~~l~~~a~~~p~~~a~~---~--~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~l   88 (562)
                      ..+.+..|+.++|.++++.+|+++|++   +  .++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|
T Consensus        14 ~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l   93 (550)
T 3rix_A           14 FYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVL   93 (550)
T ss_dssp             SSCCCCSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHH
T ss_pred             CCCcccCCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHH
Confidence            455567899999999999999998875   4  35789999999999999999999999999999999999999999999


Q ss_pred             HhhhccceEEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccC
Q 008535           89 AVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVAN  168 (562)
Q Consensus        89 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (562)
                      ||+++|++++|+++.++.+++.++++.++++++|++.+..+.+.......+.      ...++.++.....         
T Consensus        94 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~---------  158 (550)
T 3rix_A           94 GALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPI------IQKIIIMDSKTDY---------  158 (550)
T ss_dssp             HHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTT------CCEEEETTCSSCB---------
T ss_pred             HHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCC------cceEEEEcCCccc---------
Confidence            9999999999999999999999999999999999999888777766554432      2344444332110         


Q ss_pred             CCCCCCCchhhhhhcccC------ccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhh---cCCCCCC
Q 008535          169 NFPSGSLDYNDLLEMGKA------DFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISR---CDVRDMP  239 (562)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~---~~~~~~~  239 (562)
                         .+..++.++......      .........++|+++|+|||||||.||||.+||+++..........   +++.+++
T Consensus       159 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~  235 (550)
T 3rix_A          159 ---QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDT  235 (550)
T ss_dssp             ---TTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTC
T ss_pred             ---cCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCc
Confidence               122344444433221      1111122345789999999999999999999999998877766554   5688999


Q ss_pred             eeeeecccccchhhHHHHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEe
Q 008535          240 VFLWTLDMFRCNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIA  319 (562)
Q Consensus       240 ~~l~~~pl~~~~gl~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~  319 (562)
                      ++++.+|++|.+++...+.++..|+++++.+.+++..+++.++++++|+++++|+++..|++.......+++++|.+++|
T Consensus       236 ~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~g  315 (550)
T 3rix_A          236 AILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASG  315 (550)
T ss_dssp             EEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEEC
T ss_pred             EEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEe
Confidence            99999999999999988899999999999999999999999999999999999999999999887777789999999999


Q ss_pred             CCCChHHHHHHHH-hcCCe-eeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccc
Q 008535          320 GVLPTIEVLEQVA-NFGFN-IRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSV  397 (562)
Q Consensus       320 g~~l~~~~~~~~~-~~~~~-l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~  397 (562)
                      |+++++++.+.++ .++.. +++.||+||+++.++.....            ......+|.|.++. .++|++.+++.++
T Consensus       316 G~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~------------~~~~~~vG~~~~~~-~~~i~d~~~~~~~  382 (550)
T 3rix_A          316 GAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEG------------DDKPGAVGKVVPFF-EAKVVDLDTGKTL  382 (550)
T ss_dssp             SSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT------------CCCTTEEEEECTTC-EEEEECTTTCCBC
T ss_pred             cCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCC------------CCCCCCcccccCCc-EEEEEeCCCCcCC
Confidence            9999999999998 56764 89999999998776654321            11234567777777 8888887788888


Q ss_pred             cCCCCceeEEEEcchhhhhhhcCCchhhHhhh-ccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhc
Q 008535          398 PHDGKTLGEVMFRANTVMLGYFKNPKATEEAF-RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLS  476 (562)
Q Consensus       398 ~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~  476 (562)
                      +.|  +.|||+|+|++++.||+++++.+...| .+|||+|||+|++|+||++++.||.||+||++|++|+|.+||++|.+
T Consensus       383 ~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~  460 (550)
T 3rix_A          383 GVN--QRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQ  460 (550)
T ss_dssp             CTT--CCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-------------------------
T ss_pred             CCC--CCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHh
Confidence            776  779999999999999999999999999 68999999999999999999999999999999999999999999999


Q ss_pred             CCCceeEEEEeeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCc-EEEe-ecccCCCCCcchHHHHhhhhh
Q 008535          477 NPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPR-AIFF-EDIPVNSTGKVQKFVLRGKVN  554 (562)
Q Consensus       477 ~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~-~i~~-~~lP~t~~GKv~r~~l~~~~~  554 (562)
                      +|+|.+++|++.+++..++.++++|++.++...+.++++++++++++.++.|. .+++ .+||+|++||++|++|++++.
T Consensus       461 ~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~  540 (550)
T 3rix_A          461 HPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILI  540 (550)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCcceEEEEEeecCCCCceEEEEEEecCCCCCCHHHHHHHHHHhcccccccCCceEEEeecCCCCCcceeHHHHHHHHH
Confidence            99999999999999999999999999888777788899999999999886554 4654 559999999999999999998


Q ss_pred             hhccc
Q 008535          555 ATAVG  559 (562)
Q Consensus       555 ~~~~~  559 (562)
                      +...+
T Consensus       541 ~~~~~  545 (550)
T 3rix_A          541 KAKKG  545 (550)
T ss_dssp             -----
T ss_pred             hhccc
Confidence            76654

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=2.9e-77  Score=627.35  Aligned_cols=503  Identities=21%  Similarity=0.243  Sum_probs=404.0

Q ss_pred             CCChH-HHHHHHHHHcCCceEEEE-----CCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhh
Q 008535           19 PLTPI-DFLERAAHVYGDATSIIY-----GTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPM   92 (562)
Q Consensus        19 ~~ti~-~~l~~~a~~~p~~~a~~~-----~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~   92 (562)
                      ..|+. ++|+++++.+|+++|+++     .++++||+||.++++++|++|.++|+++||+|+++++|++++++++|||++
T Consensus        54 ~~n~~~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~~~  133 (580)
T 3etc_A           54 NFNFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHK  133 (580)
T ss_dssp             SCCHHHHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHh
Confidence            35666 999999999999999986     236899999999999999999999999999999999999999999999999


Q ss_pred             ccceEEecCCCCCHHHHHHHHhhCCceEEEEeccch--HHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCC
Q 008535           93 AGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFV--EVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNF  170 (562)
Q Consensus        93 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (562)
                      +|++++|+++.++.+++.++++.++++++|++.+..  +.+......+...     ...++.++...             
T Consensus       134 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-------------  195 (580)
T 3etc_A          134 LGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDI-----PLKKAKVGGDV-------------  195 (580)
T ss_dssp             HTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSC-----CCEEEEESSSC-------------
T ss_pred             CCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCc-----ceEEEEeCCcc-------------
Confidence            999999999999999999999999999999988765  5555554443321     12233332211             


Q ss_pred             CCCCCchhhhhhcccCccccC---CCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeeccc
Q 008535          171 PSGSLDYNDLLEMGKADFEMM---QPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDM  247 (562)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl  247 (562)
                      ..+..++.+............   ....++|+++|+|||||||.||||.++|.++..........+++.++++++...|+
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (580)
T 3etc_A          196 LEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADS  275 (580)
T ss_dssp             CTTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCT
T ss_pred             ccccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCCh
Confidence            123345555554433322221   23567899999999999999999999999988877776677788999999999999


Q ss_pred             ccchhhHH-HHHhHhhceEEEEe--ccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCCh
Q 008535          248 FRCNGWCC-TWAMAAVGGINVCI--RTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPT  324 (562)
Q Consensus       248 ~~~~gl~~-~~~~~~~g~~~v~~--~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~  324 (562)
                      +|..++.. ++.++..|+++++.  ..+++..+++.++++++|+++++|++++.|++. .....+++++|.+++||++++
T Consensus       276 ~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~-~~~~~~l~~lr~i~~gGe~l~  354 (580)
T 3etc_A          276 GWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE-DLSHYNFSTLKYAVVAGEPLN  354 (580)
T ss_dssp             TSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTS-CC---CCTTCCEEEECSSCCC
T ss_pred             HHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhc-ccccCCCccceEEEEccCCCC
Confidence            99888764 56677788888777  468999999999999999999999999999886 334467899999999999999


Q ss_pred             HHHHHHHH-hcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCc
Q 008535          325 IEVLEQVA-NFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKT  403 (562)
Q Consensus       325 ~~~~~~~~-~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~  403 (562)
                      +++.++|. .+++++++.||+||++..++.....            ......+|.|.++. .++|+|. ++++++.|  +
T Consensus       355 ~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~------------~~~~~~~G~p~~~~-~v~ivd~-~g~~~~~g--~  418 (580)
T 3etc_A          355 PEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWM------------EPKPGSIGKPTPGY-KIELMDR-DGRLCEVG--E  418 (580)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCTTSSCCEECCTTS------------CCCTTCCBEECTTC-EEEEECT-TSCBCCTT--C
T ss_pred             HHHHHHHHHHhCCeEecccccccccceeecCCCC------------CCCCCccccCCCCC-EEEEECC-CCCCCCCC--C
Confidence            99999998 4699999999999997665543211            12234678888777 8888886 57887776  7


Q ss_pred             eeEEEEcc-----hhhhhhhcCCchhhHhhhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCC
Q 008535          404 LGEVMFRA-----NTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNP  478 (562)
Q Consensus       404 ~Gel~v~~-----~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~  478 (562)
                      .|||+|+|     +.++.||+++|+.+.+.|.+|||+|||+|++|+||.++++||.||+||++|.+|+|.+||++|.++|
T Consensus       419 ~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p  498 (580)
T 3etc_A          419 EGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHP  498 (580)
T ss_dssp             CEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTST
T ss_pred             ceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCC
Confidence            79999997     7899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeEEEEeeeCCCCCceeEEEEEeCCCCCCC---HHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhh
Q 008535          479 KVLEAAVVGKVDDQLKEVPVAFVKLKEGREAS---PEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVN  554 (562)
Q Consensus       479 ~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~  554 (562)
                      .|.+++|++.+++..++.++++|++.++....   .++|++++++.++.|++|+.+.+++ ||+|++||++|++|++++.
T Consensus       499 ~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~~~~  578 (580)
T 3etc_A          499 AVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDKDQ  578 (580)
T ss_dssp             TEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHSCGGGCCSEEEEECC-------------------
T ss_pred             CeeeEEEEeeeccCCCcEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcHHHHHhHhh
Confidence            99999999999999999999999998775444   3689999999999999999988655 9999999999999999886


Q ss_pred             hh
Q 008535          555 AT  556 (562)
Q Consensus       555 ~~  556 (562)
                      ++
T Consensus       579 ~q  580 (580)
T 3etc_A          579 SQ  580 (580)
T ss_dssp             --
T ss_pred             cC
Confidence            53

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=2e-76  Score=629.55  Aligned_cols=510  Identities=21%  Similarity=0.281  Sum_probs=420.9

Q ss_pred             ChHHHHHHHHHHcCCceEEEE------CCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhcc
Q 008535           21 TPIDFLERAAHVYGDATSIIY------GTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAG   94 (562)
Q Consensus        21 ti~~~l~~~a~~~p~~~a~~~------~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G   94 (562)
                      ++.++|+++++.+|+++|+++      .++++||+||.++++++|+.|.++|+++||+|+++++|++++++++|||+++|
T Consensus        77 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G  156 (652)
T 1pg4_A           77 LAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIG  156 (652)
T ss_dssp             HHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcC
Confidence            467889999999999999997      33789999999999999999999999999999999999999999999999999


Q ss_pred             ceEEecCCCCCHHHHHHHHhhCCceEEEEeccch---------HHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCccc
Q 008535           95 AVLSALNTRLDSATLASILRQLEAKIIFVDYQFV---------EVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCS  165 (562)
Q Consensus        95 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (562)
                      ++++|+++.++.+++.+++++++++++|+++...         +.+..........    ....++.++......     
T Consensus       157 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~vi~~~~~~~~~-----  227 (652)
T 1pg4_A          157 AVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVT----SVEHVIVLKRTGSDI-----  227 (652)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCC----SCCEEEEECSSCCCC-----
T ss_pred             cEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcC----CCCEEEEEeCCCCcc-----
Confidence            9999999999999999999999999999987643         2333333221100    023344443221100     


Q ss_pred             ccCCCCCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHH-HHHhhcCCCCCCeeeee
Q 008535          166 VANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSL-AQISRCDVRDMPVFLWT  244 (562)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~-~~~~~~~~~~~~~~l~~  244 (562)
                        .........|.++....... ....+..++|+++|+|||||||.||||+++|+++..... .....+++.++|++++.
T Consensus       228 --~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~  304 (652)
T 1pg4_A          228 --DWQEGRDLWWRDLIEKASPE-HQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCT  304 (652)
T ss_dssp             --CCCBTTEEEHHHHHTTSCSC-CCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEEC
T ss_pred             --cccCCCceeHHHHHhhcCCC-CCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEc
Confidence              00011123455555433221 112234578999999999999999999999999876654 44556889999999999


Q ss_pred             cccccchhh-HHHHHhHhhceEEEEecc----CCHHHHHHHHHhcCeEEEEcchHHHHHHHhccc--cccccccceEEEE
Q 008535          245 LDMFRCNGW-CCTWAMAAVGGINVCIRT----VSAKIIFDSILIHKVTHLCGQPRILNMIANASA--SDQNQLQRKVIIV  317 (562)
Q Consensus       245 ~pl~~~~gl-~~~~~~~~~g~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~--~~~~~l~~l~~i~  317 (562)
                      .|++|.+++ ...+.++..|+++++.+.    +++..+++.++++++|+++++|++++.|++...  ....+++++|.++
T Consensus       305 ~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~  384 (652)
T 1pg4_A          305 ADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILG  384 (652)
T ss_dssp             SCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEE
T ss_pred             cCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEE
Confidence            999999998 567888999999999864    589999999999999999999999999998764  2345689999999


Q ss_pred             EeCCCChHHHHHHHH-hcC---CeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCC
Q 008535          318 IAGVLPTIEVLEQVA-NFG---FNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNT  393 (562)
Q Consensus       318 ~~g~~l~~~~~~~~~-~~~---~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~  393 (562)
                      +||++++++..+++. .++   +++++.||+||+++.++.....          ........+|.|.++. .++|+|. +
T Consensus       385 ~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~----------~~~~~~~s~G~p~~g~-~v~i~d~-~  452 (652)
T 1pg4_A          385 SVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPG----------AIELKAGSATRPFFGV-QPALVDN-E  452 (652)
T ss_dssp             EESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTT----------TCCBCTTCCBSBCTTC-CEEEECT-T
T ss_pred             EecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCC----------CcCccCCccccCcCCC-eEEEECC-C
Confidence            999999999999998 566   8999999999998766543211          0112345678888887 8888886 6


Q ss_pred             cccccCCCCceeEEEEcc--hhhhhhhcCCchhhHhhh---ccceeeeCceeEEcCCCcEEEeccccceeecCCeEechH
Q 008535          394 MKSVPHDGKTLGEVMFRA--NTVMLGYFKNPKATEEAF---RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSL  468 (562)
Q Consensus       394 ~~~~~~~~~~~Gel~v~~--~~~~~gy~~~~~~~~~~~---~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~  468 (562)
                      +++++.+  +.|||+|+|  |+++.|||++++.+...|   .+|||+|||+|++|+||.+++.||.||+||++|.+|+|.
T Consensus       453 g~~v~~g--~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~  530 (652)
T 1pg4_A          453 GHPQEGA--TEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTA  530 (652)
T ss_dssp             CCBCCSS--EEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHH
T ss_pred             CCCcCCC--ceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHH
Confidence            7777765  789999999  789999999999888776   378999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCCCCC---HHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcc
Q 008535          469 EVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREAS---PEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKV  544 (562)
Q Consensus       469 ~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv  544 (562)
                      +||++|.+||.|.+++|++.+++..++.++++|+++++...+   .++|+++++++++.|++|+.+.+++ ||+|++||+
T Consensus       531 eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi  610 (652)
T 1pg4_A          531 EIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKI  610 (652)
T ss_dssp             HHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCB
T ss_pred             HHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccc
Confidence            999999999999999999999998899999999998775544   5789999999999999999988665 999999999


Q ss_pred             hHHHHhhhhhhh
Q 008535          545 QKFVLRGKVNAT  556 (562)
Q Consensus       545 ~r~~l~~~~~~~  556 (562)
                      +|++|++++.++
T Consensus       611 ~R~~L~~~~~~~  622 (652)
T 1pg4_A          611 MRRILRKIAAGD  622 (652)
T ss_dssp             CHHHHHHHHHTC
T ss_pred             hHHHHHHHHhCC
Confidence            999999999876

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=7.7e-77  Score=617.80  Aligned_cols=494  Identities=18%  Similarity=0.192  Sum_probs=413.5

Q ss_pred             CChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEEe
Q 008535           20 LTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSA   99 (562)
Q Consensus        20 ~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~   99 (562)
                      ||+.++|+++++.+|+++|+++.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus         1 m~l~~~l~~~a~~~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vp   80 (512)
T 3fce_A            1 MKLLEQIEKWAAETPDQTAFVWRDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIP   80 (512)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEE
T ss_pred             CcHHHHHHHHHHHCCCceEEEeCCceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEe
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCchhh
Q 008535          100 LNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYND  179 (562)
Q Consensus       100 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (562)
                      +++.++.+++.++++.+++++++++......      ..        ...++..                     ..+.+
T Consensus        81 l~~~~~~~~l~~il~~~~~~~~i~~~~~~~~------~~--------~~~~~~~---------------------~~~~~  125 (512)
T 3fce_A           81 VDLSIPADRVQRIAENSGAKLLLSATAVTVT------DL--------PVRIVSE---------------------DNLKD  125 (512)
T ss_dssp             EETTSCHHHHHHHHHHSCCCEEEESSCCCSS------CC--------SSEEEET---------------------HHHHH
T ss_pred             eCCCCcHHHHHHHHHhcCCCEEEecCccccc------cc--------ccceech---------------------hhhhh
Confidence            9999999999999999999999997542100      00        0000000                     01111


Q ss_pred             hhhcc-cCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHHHHH
Q 008535          180 LLEMG-KADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWA  258 (562)
Q Consensus       180 ~~~~~-~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~~~~  258 (562)
                      +.... ...........++|+++|+|||||||.||||.+||+++..........+++.++|++++.+|++|.+++...+.
T Consensus       126 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~  205 (512)
T 3fce_A          126 IFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYP  205 (512)
T ss_dssp             HHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHH
T ss_pred             hcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHH
Confidence            11111 11111122356789999999999999999999999999999998888999999999999999999999988899


Q ss_pred             hHhhceEEEEecc---CCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHH-hc
Q 008535          259 MAAVGGINVCIRT---VSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVA-NF  334 (562)
Q Consensus       259 ~~~~g~~~v~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~-~~  334 (562)
                      ++..|+++++.+.   +++..+++.++++++|++.++|+++..++.........++++|.+++||+++++++.+.+. .+
T Consensus       206 ~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~  285 (512)
T 3fce_A          206 SLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERF  285 (512)
T ss_dssp             HHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHC
T ss_pred             HHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHC
Confidence            9999999999876   7899999999999999999999999999988777777899999999999999999999998 45


Q ss_pred             -CCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchh
Q 008535          335 -GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANT  413 (562)
Q Consensus       335 -~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~  413 (562)
                       ++++++.||+||+++.++.......       .........+|.+.++. .+++++. ++.+++.|  +.|||+|+||+
T Consensus       286 ~~~~i~~~YG~TE~~~~~~~~~~~~~-------~~~~~~~~~~G~~~~~~-~~~i~d~-~g~~~~~g--~~GEl~v~g~~  354 (512)
T 3fce_A          286 PKATIMNTYGPTEATVAVTGIHVTEE-------VLDQYKSLPVGYCKSDC-RLLIMKE-DGTIAPDG--EKGEIVIVGPS  354 (512)
T ss_dssp             TTCEEEEEECCGGGSSCSEEEECCHH-------HHHHCSSCCCEEECTTC-EEEEECS-SSCBCCTT--SCEEEEEESTT
T ss_pred             CCCEEEeCcccChhhhheeeEEeccc-------cccccCCCccccccCCc-EEEEECC-CCCCCCCC--CeEEEEEeccc
Confidence             8899999999999877665322110       00111234566776666 7777775 67777776  77999999999


Q ss_pred             hhhhhcCCchhhHhhhc----cceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeee
Q 008535          414 VMLGYFKNPKATEEAFR----NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKV  489 (562)
Q Consensus       414 ~~~gy~~~~~~~~~~~~----~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~  489 (562)
                      ++.||+++++.+.+.|.    +|||+|||+|++ +||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+
T Consensus       355 v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~  433 (512)
T 3fce_A          355 VSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIK  433 (512)
T ss_dssp             SCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEE
T ss_pred             cChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEe
Confidence            99999999999999983    569999999999 7999999999999999999999999999999999999999999999


Q ss_pred             CCCCCceeEEEEEeCCCCCCC----HHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhhcccc
Q 008535          490 DDQLKEVPVAFVKLKEGREAS----PEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNATAVGW  560 (562)
Q Consensus       490 ~~~~~~~~v~~v~~~~~~~~~----~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~~~~~  560 (562)
                      +...++.++++|++.+.....    .++++++++++++.|++|+.+.+++ ||+|++||++|++|++.+.++...+
T Consensus       434 ~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~~~~~  509 (512)
T 3fce_A          434 KGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTALEHHH  509 (512)
T ss_dssp             ETTEEEEEEEEEEECSCCCSSHHHHHHHHHHHHHTTSCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC-----
T ss_pred             cCCCceEEEEEEecCCccccchhhhHHHHHHHHHhhCchhcCCeEEEEecccCCCCCcChHHHHHHhhhhhccccc
Confidence            988889999999987664433    2579999999999999999988665 9999999999999999998887543

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=3.7e-76  Score=612.16  Aligned_cols=490  Identities=18%  Similarity=0.215  Sum_probs=419.6

Q ss_pred             CChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEE
Q 008535           20 LTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQ-LKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLS   98 (562)
Q Consensus        20 ~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~-~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v   98 (562)
                      ||+.++|+++++.+|+++|+.+.++++||+||+++++++|++|.+ .|.++||+|+++++|++++++++|||+++|++++
T Consensus         1 m~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v   80 (511)
T 3e7w_A            1 MKLLHAIQTHAETYPQTDAFRSQGQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYI   80 (511)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEE
T ss_pred             CcHHHHHHHHHHHCCCCeEEEcCCceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEE
Confidence            589999999999999999999999999999999999999999988 4889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCchh
Q 008535           99 ALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYN  178 (562)
Q Consensus        99 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (562)
                      |+++.++.+++.++++.++++++|++......      ...        ..                      .....+.
T Consensus        81 pl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~------~~~--------~~----------------------~~~~~~~  124 (511)
T 3e7w_A           81 PVDLSIPSERIAKIIESSGAELLIHAAGLSID------AVG--------QQ----------------------IQTVSAE  124 (511)
T ss_dssp             EEETTSCHHHHHHHHHHHTCCEEEESSSCCTT------CCC--------CS----------------------SCEEEHH
T ss_pred             ecCCCChHHHHHHHHHhCCCCEEEecccccch------hcc--------cc----------------------cceecHh
Confidence            99999999999999999999999997542100      000        00                      0012223


Q ss_pred             hhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHHHHH
Q 008535          179 DLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWA  258 (562)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~~~~  258 (562)
                      ++...............++++++|+|||||||.||||.+||+++..........+++.+++++++..|++|.+++...+.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~  204 (511)
T 3e7w_A          125 ELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYP  204 (511)
T ss_dssp             HHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHH
T ss_pred             hhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHH
Confidence            33332222222222356789999999999999999999999999999998888999999999999999999999988899


Q ss_pred             hHhhceEEEEecc---CCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHH-hc
Q 008535          259 MAAVGGINVCIRT---VSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVA-NF  334 (562)
Q Consensus       259 ~~~~g~~~v~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~-~~  334 (562)
                      ++..|+++++.+.   +++..+++.++++++|+++++|++++.++.........++++|.+++||++++++..+.+. .+
T Consensus       205 ~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~  284 (511)
T 3e7w_A          205 CLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERF  284 (511)
T ss_dssp             HHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHC
T ss_pred             HHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHC
Confidence            9999999998875   6899999999999999999999999999988776777889999999999999999999998 45


Q ss_pred             -CCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchh
Q 008535          335 -GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANT  413 (562)
Q Consensus       335 -~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~  413 (562)
                       ++++++.||+||+++.++.......       .........+|.|.++. .++|+|. ++++++.|  +.|||+|+|++
T Consensus       285 ~~~~i~~~YG~TE~~~~~~~~~~~~~-------~~~~~~~~~~G~~~~~~-~~~i~d~-~g~~~~~g--~~GEl~v~g~~  353 (511)
T 3e7w_A          285 PKAKIFNTYGPTEATVAVTSVEITND-------VISRSESLPVGFAKPDM-NIFIMDE-EGQPLPEG--EKGEIVIAGPS  353 (511)
T ss_dssp             TTCEEEECCCCGGGSSCSEEEEECHH-------HHTTCSSCCCBEECTTC-EEEEECT-TSCBCCTT--CCEEEEEESTT
T ss_pred             CCcEEEeCcccchheeeeeEEecccc-------ccccCCcCCCcceeCCC-EEEEECC-CCCCCCCC--CceEEEEecCc
Confidence             8999999999999877665432110       00111223567777777 8888886 57888776  77999999999


Q ss_pred             hhhhhcCCchhhHhhhc--cc--eeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeee
Q 008535          414 VMLGYFKNPKATEEAFR--NG--WYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKV  489 (562)
Q Consensus       414 ~~~gy~~~~~~~~~~~~--~g--~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~  489 (562)
                      ++.||+++++.+.+.|.  +|  ||+|||+|++ +||.+++.||.||+||++|++|+|.+||++|.++|.|.+++|++.+
T Consensus       354 v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~  432 (511)
T 3e7w_A          354 VSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQ  432 (511)
T ss_dssp             SCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEC
T ss_pred             cChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEc
Confidence            99999999999999983  44  8999999999 5999999999999999999999999999999999999999999999


Q ss_pred             CCCCCceeEEEEEeCCCCCCC----HHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhhc
Q 008535          490 DDQLKEVPVAFVKLKEGREAS----PEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNATA  557 (562)
Q Consensus       490 ~~~~~~~~v~~v~~~~~~~~~----~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~~  557 (562)
                      ++..++.+++++++.++....    .++++++++++++.|++|+.+.+++ ||+|++||++|++|++.+.+..
T Consensus       433 ~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~~~  505 (511)
T 3e7w_A          433 PNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLVRS  505 (511)
T ss_dssp             SSSSCCEEEEEEEECCCCCSSHHHHHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHHHH
T ss_pred             CCCCceEEEEEEEeccccccchhhHHHHHHHHHHhhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhhhc
Confidence            888899999999988765444    3679999999999999999988765 9999999999999999988765

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=1.2e-75  Score=613.26  Aligned_cols=481  Identities=19%  Similarity=0.205  Sum_probs=405.5

Q ss_pred             CCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEE
Q 008535           19 PLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLS   98 (562)
Q Consensus        19 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v   98 (562)
                      ..|+.++|+++++.+|+++|+++.++++||+||.+++.++|++|.+.|+++||+|+++++|++++++++|||+++|++++
T Consensus        38 ~~~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v  117 (563)
T 1amu_A           38 DKTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYV  117 (563)
T ss_dssp             TCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEE
T ss_pred             CCcHHHHHHHHHHHCCCCeEEEeCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEE
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCchh
Q 008535           99 ALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYN  178 (562)
Q Consensus        99 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (562)
                      |+++.++.+++.++++.++++++|++......+..    ...      ...+..+.....                    
T Consensus       118 pl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~----~~~------~~~~~~~~~~~~--------------------  167 (563)
T 1amu_A          118 PIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHN----IQF------NGQVEIFEEDTI--------------------  167 (563)
T ss_dssp             ECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTT----SCC------CSEEEECCCSTT--------------------
T ss_pred             EeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhh----ccc------cCceeeecchhh--------------------
Confidence            99999999999999999999999999875543321    110      111111111000                    


Q ss_pred             hhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHHHHH
Q 008535          179 DLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWA  258 (562)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~~~~  258 (562)
                        ....  ......+..++|+++|+|||||||.||||++||+++..........+++.++|++++..|++|..++...+.
T Consensus       168 --~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~  243 (563)
T 1amu_A          168 --KIRE--GTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFM  243 (563)
T ss_dssp             --TTSC--CSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHH
T ss_pred             --cccc--CccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHH
Confidence              0000  001112345789999999999999999999999999888888888889999999999999999999888888


Q ss_pred             hHhhceEEEEecc---CCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHHhcC
Q 008535          259 MAAVGGINVCIRT---VSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVANFG  335 (562)
Q Consensus       259 ~~~~g~~~v~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~~~~  335 (562)
                      ++..|+++++.+.   .++..+++.++++++|++.++|+++..|...      .++++|.+++||+++++++.+.|++ .
T Consensus       244 ~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~~lr~~~~gG~~l~~~~~~~~~~-~  316 (563)
T 1amu_A          244 ALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------RILSIQTLITAGSATSPSLVNKWKE-K  316 (563)
T ss_dssp             HHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------TCCSCSEEEEESSCCCHHHHHHHTT-T
T ss_pred             HHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------ccccccEEEEEEecCCHHHHHHHHh-C
Confidence            9999999998865   6899999999999999999999999877532      4678999999999999999999986 3


Q ss_pred             CeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhhh
Q 008535          336 FNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVM  415 (562)
Q Consensus       336 ~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~  415 (562)
                      +++++.||+||++..++........         ......+|.|.++. .++|+|. ++++++.|  +.|||+|+|++++
T Consensus       317 ~~~~~~YG~TE~~~~~~~~~~~~~~---------~~~~~~vG~p~~~~-~v~i~d~-~~~~~~~g--~~GEl~v~g~~v~  383 (563)
T 1amu_A          317 VTYINAYGPTETTICATTWVATKET---------IGHSVPIGAPIQNT-QIYIVDE-NLQLKSVG--EAGELCIGGEGLA  383 (563)
T ss_dssp             SEEEEEECCGGGSSCSEEEECCSSC---------CCSSCCCBEECTTE-EEEEECT-TSCBCCTT--CEEEEEEEETTCC
T ss_pred             CeEEEEECcCHHhHhheeeeccccc---------CCCCCcccceeCCC-EEEEECC-CcCCCCCC--CcEEEEEechhhC
Confidence            8999999999998766654321110         11234678887777 8888885 67777766  7899999999999


Q ss_pred             hhhcCCchhhHhhhc-------cceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEee
Q 008535          416 LGYFKNPKATEEAFR-------NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGK  488 (562)
Q Consensus       416 ~gy~~~~~~~~~~~~-------~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~  488 (562)
                      .||+++++.|.+.|.       ++||+|||+|++|+||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.
T Consensus       384 ~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~  463 (563)
T 1amu_A          384 RGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVH  463 (563)
T ss_dssp             CEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEE
T ss_pred             hhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEe
Confidence            999999999999984       3599999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhh
Q 008535          489 VDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNA  555 (562)
Q Consensus       489 ~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~  555 (562)
                      +++..++.++++++...  ..+.++++++++++|+.|++|+.+++++ ||+|++||++|++|++....
T Consensus       464 ~~~~~~~~~~a~vv~~~--~~~~~~l~~~l~~~L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~  529 (563)
T 1amu_A          464 KDHQEQPYLCAYFVSEK--HIPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPDLT  529 (563)
T ss_dssp             ECTTSCEEEEEEEEESS--CCCHHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCCCCC
T ss_pred             ecCCCCeEEEEEEEeCC--CCCHHHHHHHHHhhCchhhCCcEEEEecccCCCCCcChhHHhcCCcccc
Confidence            99888899999998764  4678899999999999999999988765 99999999999999987643

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=2.3e-75  Score=618.99  Aligned_cols=501  Identities=23%  Similarity=0.342  Sum_probs=422.4

Q ss_pred             cCCCCCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhcc
Q 008535           15 ANNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAG   94 (562)
Q Consensus        15 ~~~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G   94 (562)
                      .-+...|+.++|+++++  |+++|+++.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|
T Consensus        22 ~~~~~~~l~~~~~~~a~--pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG   99 (617)
T 3rg2_A           22 GYWQDLPLTDILTRHAA--SDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLG   99 (617)
T ss_dssp             TSCCCCCTTHHHHTTTT--CCSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHT
T ss_pred             CCCCcCCHHHHHHHhhC--CCCeEEecCCceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcC
Confidence            34567899999999988  9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEecCCCCCHHHHHHHHhhCCceEEEEeccch-----HHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCC
Q 008535           95 AVLSALNTRLDSATLASILRQLEAKIIFVDYQFV-----EVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANN  169 (562)
Q Consensus        95 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (562)
                      ++++|+++.++.+++.++++++++++++++....     ............      ...+..+....            
T Consensus       100 ~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~------------  161 (617)
T 3rg2_A          100 VAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSS------IRVVQLLNDSG------------  161 (617)
T ss_dssp             CEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTT------CCEEEEETCCS------------
T ss_pred             eEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCc------cceeeeccccc------------
Confidence            9999999999999999999999999999998654     222222221111      12222221111            


Q ss_pred             CCCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeeccccc
Q 008535          170 FPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFR  249 (562)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~  249 (562)
                          ...+.+........ ....+..++++++|+|||||||.||||+++|+++..........+++.+++++++.+|++|
T Consensus       162 ----~~~~~~~~~~~~~~-~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~  236 (617)
T 3rg2_A          162 ----EHNLQDAINHPAED-FTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAH  236 (617)
T ss_dssp             ----TTBHHHHHHSCCSS-CCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTS
T ss_pred             ----ccchhhhhcccccc-cCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchh
Confidence                12223333222221 1223356789999999999999999999999999999999888999999999999999999


Q ss_pred             chhhHH--HHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhcccccc--ccccceEEEEEeCCCChH
Q 008535          250 CNGWCC--TWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQ--NQLQRKVIIVIAGVLPTI  325 (562)
Q Consensus       250 ~~gl~~--~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~--~~l~~l~~i~~~g~~l~~  325 (562)
                      .+++..  .+.++..|+++++.+..++..+++.++++++|++.++|+++..|++......  ..++++|.+++||+++++
T Consensus       237 ~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~  316 (617)
T 3rg2_A          237 NYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSA  316 (617)
T ss_dssp             HHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCH
T ss_pred             hhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCH
Confidence            998764  7888999999999988999999999999999999999999999987654332  368899999999999999


Q ss_pred             HHHHHHH-hcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCce
Q 008535          326 EVLEQVA-NFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTL  404 (562)
Q Consensus       326 ~~~~~~~-~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~  404 (562)
                      +..+++. .+++++++.||+||++..++...           ..........|.|..+...+.|+|. ++++++.|  +.
T Consensus       317 ~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~-----------~~~~~~~~~~G~p~~~~~~~~i~d~-~~~~~p~G--~~  382 (617)
T 3rg2_A          317 TLAARIPAEIGCQLQQVFGMAEGLVNYTRLD-----------DSAEKIIHTQGYPMCPDDEVWVADA-EGNPLPQG--EV  382 (617)
T ss_dssp             HHHHHHHHHTCSEEEEEEEETTEEEEECCTT-----------SCHHHHHHCCCEESCTTCEEEEECT-TSCBCCTT--CC
T ss_pred             HHHHHHHHHhCCcEEEEeccCcceeecccCC-----------CcccccccCCCccCCCCceEEEECC-CCCCCCCC--Cc
Confidence            9999998 56999999999999875433211           1111223456777644447888885 67888877  77


Q ss_pred             eEEEEcchhhhhhhcCCchhhHhhh-ccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeE
Q 008535          405 GEVMFRANTVMLGYFKNPKATEEAF-RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEA  483 (562)
Q Consensus       405 Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~  483 (562)
                      |||+|+|+++++||+++++.|.+.| .++||+|||+|++++||.++++||.||+||++|.+|+|.+||++|.++|+|.++
T Consensus       383 GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a  462 (617)
T 3rg2_A          383 GRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYA  462 (617)
T ss_dssp             EEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEE
T ss_pred             eEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEE
Confidence            9999999999999999999999999 589999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhc-cCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhh
Q 008535          484 AVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGD-ELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNAT  556 (562)
Q Consensus       484 ~v~~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~-~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~  556 (562)
                      +|++.+++..++.++++++..+  ..+.+++++++++ .+|.|++|..+.+++ ||+|++||++|++|++.+.+.
T Consensus       463 ~vv~~~~~~~~~~~~a~vv~~~--~~~~~~l~~~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~~  535 (617)
T 3rg2_A          463 ALVSMEDELMGEKSCAYLVVKE--PLRAVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASR  535 (617)
T ss_dssp             EEEEEEETTTEEEEEEEEEESS--CCCHHHHHHHHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHHH
T ss_pred             EEEeccCcccCeeEEEEEEeCC--CCCHHHHHHHHHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhcc
Confidence            9999999888899999999876  4678899999998 699999999988665 999999999999999987654

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=1.7e-75  Score=622.49  Aligned_cols=512  Identities=23%  Similarity=0.295  Sum_probs=416.2

Q ss_pred             ChHHHHHHHHHHcCCceEEEE------CCeeccHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCcHHHHHHHHHhhhc
Q 008535           21 TPIDFLERAAHVYGDATSIIY------GTVRFSWRQTHQICLKLASALA-QLKISRGDIVAAMAPNIPALYKLHFAVPMA   93 (562)
Q Consensus        21 ti~~~l~~~a~~~p~~~a~~~------~~~~~Ty~el~~~~~~~a~~L~-~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~   93 (562)
                      ++.++|+++++.+|+++|+++      ..+++||+||.+++.++|+.|. ++|+++||+|+++++|++++++++|||+++
T Consensus        83 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~  162 (663)
T 1ry2_A           83 ACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRI  162 (663)
T ss_dssp             HHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence            577899999999999999997      3478999999999999999999 999999999999999999999999999999


Q ss_pred             cceEEecCCCCCHHHHHHHHhhCCceEEEEeccchH---------HHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcc
Q 008535           94 GAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVE---------VVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTC  164 (562)
Q Consensus        94 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (562)
                      |++++|+++.++.+++.+++++++++++|+++....         .+......++      ....++.++......    
T Consensus       163 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~vi~~~~~~~~~----  232 (663)
T 1ry2_A          163 GAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETP------GVRHVLVYRKTNNPS----  232 (663)
T ss_dssp             TCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCT------TCCEEEEECSSCCSS----
T ss_pred             CCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCC------CCceEEEEecCCCCc----
Confidence            999999999999999999999999999999876532         2333222111      023344433211000    


Q ss_pred             cccCCCCCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHH-HHHhhcCCCCCCeeee
Q 008535          165 SVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSL-AQISRCDVRDMPVFLW  243 (562)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~-~~~~~~~~~~~~~~l~  243 (562)
                        ..........|.++....... ....+..++|+++|+|||||||.||||+++|+++..... .....+++.++|++++
T Consensus       233 --~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~  309 (663)
T 1ry2_A          233 --VAFHAPRDLDWATEKKKYKTY-YPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFT  309 (663)
T ss_dssp             --CCCCSSSEEEHHHHHTTSCSC-CCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEE
T ss_pred             --cccCCCccccHHHHHhhcCCC-CCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEE
Confidence              000011123455555432211 112234578999999999999999999999999876654 3455688999999999


Q ss_pred             ecccccchhh-HHHHHhHhhceEEEEecc----CCHHHHHHHHHhcCeEEEEcchHHHHHHHhccc--cccccccceEEE
Q 008535          244 TLDMFRCNGW-CCTWAMAAVGGINVCIRT----VSAKIIFDSILIHKVTHLCGQPRILNMIANASA--SDQNQLQRKVII  316 (562)
Q Consensus       244 ~~pl~~~~gl-~~~~~~~~~g~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~--~~~~~l~~l~~i  316 (562)
                      ..|++|.+++ ...+.++..|+++++.+.    +++..+++.|+++++|+++++|++++.|.+...  ....+++++|.+
T Consensus       310 ~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i  389 (663)
T 1ry2_A          310 AGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCL  389 (663)
T ss_dssp             CSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEE
T ss_pred             cCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEE
Confidence            9999999998 457788999999998864    589999999999999999999999999988754  234568999999


Q ss_pred             EEeCCCChHHHHHHHH-hcC---CeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccC
Q 008535          317 VIAGVLPTIEVLEQVA-NFG---FNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQN  392 (562)
Q Consensus       317 ~~~g~~l~~~~~~~~~-~~~---~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~  392 (562)
                      ++||++++++.++++. .++   +++++.||+||+++.++......         ........+|.|.++. .++|+|.+
T Consensus       390 ~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~---------~~~~~~gs~G~p~~g~-~v~i~d~~  459 (663)
T 1ry2_A          390 GSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGG---------VTPMKPGSASFPFFGI-DAVVLDPN  459 (663)
T ss_dssp             EECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTT---------CCCCCTTCCCEECTTC-CEEEECSS
T ss_pred             EEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCC---------CcccCCCccccCcCCC-eEEEEcCC
Confidence            9999999999999998 456   89999999999987665532100         0122345678888877 88888876


Q ss_pred             CcccccCCCCceeEEEEcc--hhhhhhhcCCchhhHhhhc---cceeeeCceeEEcCCCcEEEeccccceeecCCeEech
Q 008535          393 TMKSVPHDGKTLGEVMFRA--NTVMLGYFKNPKATEEAFR---NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISS  467 (562)
Q Consensus       393 ~~~~~~~~~~~~Gel~v~~--~~~~~gy~~~~~~~~~~~~---~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~  467 (562)
                      ++++++.. ++.|||+|+|  |+++.|||++++.+.+.|.   +|||+|||+|++|+||.+++.||.||+||++|.+|+|
T Consensus       460 ~g~~v~~~-g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~  538 (663)
T 1ry2_A          460 TGEELNTS-HAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLST  538 (663)
T ss_dssp             STTCEECS-SCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCH
T ss_pred             CCCcCCCC-CcceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCH
Confidence            78877761 2679999999  5899999999998888872   7899999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCCC---C-------CHHHHHHHHhccCCCCCCCcEEEeec-c
Q 008535          468 LEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGRE---A-------SPEELVTFCGDELPSCMVPRAIFFED-I  536 (562)
Q Consensus       468 ~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~---~-------~~~~l~~~~~~~l~~~~~p~~i~~~~-l  536 (562)
                      .+||++|.++|.|.+++|++.+++..++.++++|+++++..   .       ..++|++++++++++|++|+.|.+++ |
T Consensus       539 ~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~l  618 (663)
T 1ry2_A          539 AEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDL  618 (663)
T ss_dssp             HHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCC
T ss_pred             HHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCC
Confidence            99999999999999999999999888999999999887643   1       25789999999999999999988765 9


Q ss_pred             cCCCCCcchHHHHhhhhhhh
Q 008535          537 PVNSTGKVQKFVLRGKVNAT  556 (562)
Q Consensus       537 P~t~~GKv~r~~l~~~~~~~  556 (562)
                      |+|++||++|++|++++.++
T Consensus       619 P~T~sGKi~R~~L~~~~~~~  638 (663)
T 1ry2_A          619 PKTRSGKIMRRILRKILAGE  638 (663)
T ss_dssp             CBCTTSCBCHHHHHHSCC--
T ss_pred             CCCCccCchHHHHHHHHcCC
Confidence            99999999999999999876

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=1.8e-75  Score=612.91  Aligned_cols=497  Identities=22%  Similarity=0.274  Sum_probs=415.5

Q ss_pred             ChHHHHHHHHHH-----cCCceEEEEC-----CeeccHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCcHHHHHHHHH
Q 008535           21 TPIDFLERAAHV-----YGDATSIIYG-----TVRFSWRQTHQICLKLASALAQL-KISRGDIVAAMAPNIPALYKLHFA   89 (562)
Q Consensus        21 ti~~~l~~~a~~-----~p~~~a~~~~-----~~~~Ty~el~~~~~~~a~~L~~~-gv~~gd~V~i~~~~~~~~~~~~lA   89 (562)
                      ++.++|+++++.     +|+++|+.+.     ++++||+||.++++++|++|.+. |+++||+|+++++|++++++++||
T Consensus        39 ~~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~~~lA  118 (570)
T 3c5e_A           39 FASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILG  118 (570)
T ss_dssp             HHHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            356899999999     9999999872     37899999999999999999998 999999999999999999999999


Q ss_pred             hhhccceEEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCC
Q 008535           90 VPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANN  169 (562)
Q Consensus        90 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (562)
                      |+++|++++|+++.++.+++.++++.++++++|++.+..+.+.......+.      ...++.++...            
T Consensus       119 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~------------  180 (570)
T 3c5e_A          119 CIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPS------LRIKLLVSEKS------------  180 (570)
T ss_dssp             HHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTT------CCEEEEESSSC------------
T ss_pred             HHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCc------eeEEEEecccC------------
Confidence            999999999999999999999999999999999999887766654433221      22333332211            


Q ss_pred             CCCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHH--HHHHHHhhcCCCCCCeeeeeccc
Q 008535          170 FPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYL--NSLAQISRCDVRDMPVFLWTLDM  247 (562)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~--~~~~~~~~~~~~~~~~~l~~~pl  247 (562)
                       ..+...+.++........ ......++|+++|+|||||||.||||.++|+ ++.  ..... ..+++.++|+++...|+
T Consensus       181 -~~~~~~~~~~~~~~~~~~-~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~  256 (570)
T 3c5e_A          181 -CDGWLNFKKLLNEASTTH-HCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTISDT  256 (570)
T ss_dssp             -CTTSEEHHHHHHHSCSCC-CCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCT
T ss_pred             -ccccccHHHHhhcccccc-cccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEcCch
Confidence             012234555444332211 1123457899999999999999999999999 544  33333 66788999999999999


Q ss_pred             ccchhhH-HHHHhHhhceEEEEec--cCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCCh
Q 008535          248 FRCNGWC-CTWAMAAVGGINVCIR--TVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPT  324 (562)
Q Consensus       248 ~~~~gl~-~~~~~~~~g~~~v~~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~  324 (562)
                      +|.+++. ..+.++..|+++++.+  .+++..+++.++++++|+++++|++++.|++.. ....+++++|.+++||++++
T Consensus       257 ~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~lr~i~~gGe~l~  335 (570)
T 3c5e_A          257 GWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYKFPHLQNCVTVGESLL  335 (570)
T ss_dssp             TSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTCCCTTCCEEEEESSCCC
T ss_pred             HHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-ccccccccceEEEEcCCcCC
Confidence            9999987 5777888999998876  689999999999999999999999999998763 23346789999999999999


Q ss_pred             HHHHHHHH-hcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCc
Q 008535          325 IEVLEQVA-NFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKT  403 (562)
Q Consensus       325 ~~~~~~~~-~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~  403 (562)
                      ++..+.|+ .+++++++.||+||++..++.....            ......+|.|.++. .++|+|. ++++++.|  +
T Consensus       336 ~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~------------~~~~~~vG~p~~~~-~v~i~d~-~g~~~~~G--~  399 (570)
T 3c5e_A          336 PETLENWRAQTGLDIRESYGQTETGLTCMVSKTM------------KIKPGYMGTAASCY-DVQIIDD-KGNVLPPG--T  399 (570)
T ss_dssp             HHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTS------------CCCTTCCCEECTTC-CEEEECT-TSCBCCTT--C
T ss_pred             HHHHHHHHHHhCCchhhccchhhcccceecCccc------------ccCCCcccccCCCc-eEEEECC-CCCCCCCC--C
Confidence            99999998 4699999999999998654432110            11234678887777 8888886 57787776  7


Q ss_pred             eeEEEEc-----chhhhhhhcCCchhhHhhhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCC
Q 008535          404 LGEVMFR-----ANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNP  478 (562)
Q Consensus       404 ~Gel~v~-----~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~  478 (562)
                      .|||+|+     |++++.||+++++.+.+.|.+|||+|||+|++|+||.+++.||.||+||++|++|+|.+||++|.++|
T Consensus       400 ~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p  479 (570)
T 3c5e_A          400 EGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHP  479 (570)
T ss_dssp             CEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTST
T ss_pred             CCeeEEeccCCCCchhhccccCChhHhhhhhcCCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCC
Confidence            7999999     99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeEEEEeeeCCCCCceeEEEEEeCCCCC--C---CHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhh
Q 008535          479 KVLEAAVVGKVDDQLKEVPVAFVKLKEGRE--A---SPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGK  552 (562)
Q Consensus       479 ~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~--~---~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~  552 (562)
                      +|.+++|++.+++..++.++++|++.++..  .   ..++|+++++++++.|++|+.+.+++ ||+|++||++|++|++.
T Consensus       480 ~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~  559 (570)
T 3c5e_A          480 AVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDK  559 (570)
T ss_dssp             TEEEEEEEEEEETTTEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCCBCTTCCBCHHHHHHH
T ss_pred             CcceEEEEeeeCCCCCeEEEEEEEECCcccCcchHHHHHHHHHHHHhhCccccCCcEEEEeccCCCCCCcCCcHHHHHHH
Confidence            999999999999988999999999876531  1   25789999999999999999988655 99999999999999998


Q ss_pred             hhhh
Q 008535          553 VNAT  556 (562)
Q Consensus       553 ~~~~  556 (562)
                      +.+.
T Consensus       560 ~~~~  563 (570)
T 3c5e_A          560 EWKM  563 (570)
T ss_dssp             HTC-
T ss_pred             HHhh
Confidence            7654

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=4.4e-76  Score=610.79  Aligned_cols=497  Identities=22%  Similarity=0.301  Sum_probs=387.1

Q ss_pred             CChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEEe
Q 008535           20 LTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSA   99 (562)
Q Consensus        20 ~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~   99 (562)
                      +||.++|+++++.+|+++|+++.++++||+||.+++.++|++|.+.   +||+|+++++|++++++++|||+++|++++|
T Consensus         1 mtl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vp   77 (501)
T 3ipl_A            1 MSLDFWLYKQAQQNGHHIAITDGQESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEIAM   77 (501)
T ss_dssp             --CCCHHHHHHHHHTTSEEEECSSCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCHHHHHHHHHHhcCCceEEEeCCcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEe
Confidence            5788999999999999999999999999999999999999999987   8999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCC-CCchh
Q 008535          100 LNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSG-SLDYN  178 (562)
Q Consensus       100 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  178 (562)
                      +++.++.+++.++++.++++++|++............. . .     ...+.........      ........ .....
T Consensus        78 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~-~-~-----~~~~~~~~~~~~~------~~~~~~~~~~~~~~  144 (501)
T 3ipl_A           78 INTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSL-D-D-----IEFAGRDITTNGL------LDNTMGIQYDTSNE  144 (501)
T ss_dssp             CCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEET-T-C--------------------------------------
T ss_pred             cCccCCHHHHHHHHHhcCCCEEEEcccccccccccccc-c-c-----ceeeeeecccccc------cccccccccccchh
Confidence            99999999999999999999999987654322110000 0 0     0000000000000      00000000 00000


Q ss_pred             hhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHHHHH
Q 008535          179 DLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWA  258 (562)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~~~~  258 (562)
                      .................++|+++|+|||||||.||||.+||+++..........+++.++|++++.+|++|.+|+...+.
T Consensus       145 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~  224 (501)
T 3ipl_A          145 TVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLR  224 (501)
T ss_dssp             -----CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHH
T ss_pred             hccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHH
Confidence            11111111111122356789999999999999999999999999999998888999999999999999999999998889


Q ss_pred             hHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHHhcCCee
Q 008535          259 MAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVANFGFNI  338 (562)
Q Consensus       259 ~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~~~~~~l  338 (562)
                      ++..|+++++.+.+++..+++.++++++|+++++|++++.|++......   .++|.+++||++++++..+.+.++++++
T Consensus       225 ~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---~~lr~i~~gG~~l~~~~~~~~~~~~~~~  301 (501)
T 3ipl_A          225 AVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP---YNLQKILLGGAKLSATMIETALQYNLPI  301 (501)
T ss_dssp             HHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC---TTCCEEEECSSCCCHHHHHHHHHTTCCE
T ss_pred             HHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc---CcccEEEEeCCCCCHHHHHHHHHhCCCE
Confidence            9999999999999999999999999999999999999999988764332   2899999999999999999998889999


Q ss_pred             eccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhhhhhh
Q 008535          339 RHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGY  418 (562)
Q Consensus       339 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy  418 (562)
                      ++.||+||+++.++....          .........+|.|.++. .+++++.+.        ++.|||+|+|+.++.||
T Consensus       302 ~~~YG~TE~~~~~~~~~~----------~~~~~~~~~~G~p~~~~-~~~i~d~~~--------~~~GEl~v~g~~~~~gY  362 (501)
T 3ipl_A          302 YNSFGMTETCSQFLTATP----------EMLHARPDTVGMPSANV-DVKIKNPNK--------EGHGELMIKGANVMNGY  362 (501)
T ss_dssp             EEEEEEGGGTEEEEEECH----------HHHHHCTTCCBEECTTC-EEEEESCCS--------SCCEEEEEESTTSCSCC
T ss_pred             eccccccccccceeecCc----------cccccCCCCCCCCCCCc-EEEEecCCC--------CCccEEEEeccchhhhh
Confidence            999999999765544321          11122334567777776 777777541        25699999999999999


Q ss_pred             cCCchhhHhhhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCCCCCceeE
Q 008535          419 FKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPV  498 (562)
Q Consensus       419 ~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v  498 (562)
                      +++++.+.. |.+|||+|||+|++|+||++++.||.||+||++|.+|+|.+||++|.++|+|.+++|++.+++..++.++
T Consensus       363 ~~~~~~t~~-~~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~  441 (501)
T 3ipl_A          363 LYPTDLTGT-FENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPK  441 (501)
T ss_dssp             SBSTTCCCS-EETTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEE
T ss_pred             CcChhhcch-hcCCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEE
Confidence            999998887 8899999999999999999999999999999999999999999999999999999999999999899999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhhc
Q 008535          499 AFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNATA  557 (562)
Q Consensus       499 ~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~~  557 (562)
                      ++++..  ...+.++++++++++++.|++|+.+.+++ ||+|++||++|++|++...+..
T Consensus       442 a~v~~~--~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~~~  499 (501)
T 3ipl_A          442 LYFVSE--SDISKAQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHHHH  499 (501)
T ss_dssp             EEEEES--SCCCHHHHHHHHHHHSCGGGSCSEEEECSSCC--------------------
T ss_pred             EEEEeC--CCCCHHHHHHHHHhhCccccCCCEEEEecccCCCCCCCEeHHHHhhcccccc
Confidence            999864  34678999999999999999999988665 9999999999999999887654

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=1.4e-75  Score=610.03  Aligned_cols=490  Identities=20%  Similarity=0.218  Sum_probs=403.1

Q ss_pred             CCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEE
Q 008535           19 PLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLS   98 (562)
Q Consensus        19 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v   98 (562)
                      ..|+.++|+++++.+|+++|+.+.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++
T Consensus         3 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~v   82 (521)
T 3l8c_A            3 LKDMIDSIEQFAQTQADFPVYDCLGERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYI   82 (521)
T ss_dssp             CCCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCEE
T ss_pred             HHHHHHHHHHHHHHCCCCcceecCCCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEE
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCchh
Q 008535           99 ALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYN  178 (562)
Q Consensus        99 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (562)
                      |+++.++.+++.++++.++++++|++.+....+.              ...+                        ..+.
T Consensus        83 pl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~--------------~~~~------------------------~~~~  124 (521)
T 3l8c_A           83 PVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIE--------------GISL------------------------VSLS  124 (521)
T ss_dssp             EEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCT--------------TSEE------------------------EEHH
T ss_pred             ecCccccHHHHHHHHHhCCCCEEEecCccccccc--------------cCcc------------------------cchh
Confidence            9999999999999999999999999875421100              0000                        1111


Q ss_pred             hhhhc--ccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhh--cCCCCCCeeeeecccccchhhH
Q 008535          179 DLLEM--GKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISR--CDVRDMPVFLWTLDMFRCNGWC  254 (562)
Q Consensus       179 ~~~~~--~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~--~~~~~~~~~l~~~pl~~~~gl~  254 (562)
                      ++...  ............++|+++|+|||||||.||||++||+++.....+....  +.+...++++...|++|..++.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  204 (521)
T 3l8c_A          125 EIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVM  204 (521)
T ss_dssp             HHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHH
T ss_pred             hhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHH
Confidence            11111  0111112233567899999999999999999999999998877766655  6788999999999999999988


Q ss_pred             HHHHhHhhceEEEEeccC---CHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHH
Q 008535          255 CTWAMAAVGGINVCIRTV---SAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQV  331 (562)
Q Consensus       255 ~~~~~~~~g~~~v~~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~  331 (562)
                      ..+.++..|+++++.+..   ++..+++.+.+++++++.++|+++..++.........++++|.+++||++++++..+.+
T Consensus       205 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~  284 (521)
T 3l8c_A          205 YWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKL  284 (521)
T ss_dssp             HHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHH
T ss_pred             HHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHH
Confidence            888889999999988754   89999999999999999999999999988877667788999999999999999999998


Q ss_pred             H-hc-CCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEE
Q 008535          332 A-NF-GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMF  409 (562)
Q Consensus       332 ~-~~-~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v  409 (562)
                      . .+ ++++++.||+||+++.++.......       .........+|.|.++. .++|+|. ++.+++.|  +.|||+|
T Consensus       285 ~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~-------~~~~~~~~~vG~p~~~~-~~~i~d~-~g~~~~~g--~~GEl~v  353 (521)
T 3l8c_A          285 FERFPSAKIINAYGPTEATVALSAIEITRE-------MVDNYTRLPIGYPKPDS-PTYIIDE-DGKELSSG--EQGEIIV  353 (521)
T ss_dssp             HHHCTTCEEEEEECCGGGSSCSEEEEECHH-------HHHHCSSCEEEEECTTS-CEEEECT-TSCBCCTT--CCEEEEE
T ss_pred             HHHCCCceEEeCcCccHHhhhhceeecccc-------cccCCCccccccccCCC-EEEEECC-CcCCCCCC--CceEEEe
Confidence            7 45 8999999999999877665432110       00111223577777777 8888885 67777776  7799999


Q ss_pred             cchhhhhhhcCCchhhHhhh----ccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEE
Q 008535          410 RANTVMLGYFKNPKATEEAF----RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAV  485 (562)
Q Consensus       410 ~~~~~~~gy~~~~~~~~~~~----~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v  485 (562)
                      +||+++.||+++++.+.+.|    .+|||+|||+|++|+||++++.||.||+||++|++|+|.+||++|.++|.|.+++|
T Consensus       354 ~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~v  433 (521)
T 3l8c_A          354 TGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVA  433 (521)
T ss_dssp             ESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEE
T ss_pred             cccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEE
Confidence            99999999999999999998    36799999999999999999999999999999999999999999999999999999


Q ss_pred             EeeeCCC-CCceeEEEEEeCCCCCCC-------HHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhh
Q 008535          486 VGKVDDQ-LKEVPVAFVKLKEGREAS-------PEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNAT  556 (562)
Q Consensus       486 ~~~~~~~-~~~~~v~~v~~~~~~~~~-------~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~  556 (562)
                      ++.++.. .++.++++|++.++....       .++++++++++++.|++|+.+.+++ ||+|++||++|++|++.+.++
T Consensus       434 v~~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~~  513 (521)
T 3l8c_A          434 VPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNR  513 (521)
T ss_dssp             ECCCSSSCC---CEEEEEECTTSGGGCSSHHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC--
T ss_pred             EEeecCCCCceEEEEEEEecCccccccccchhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhhhhhcC
Confidence            9887544 457899999988764321       5789999999999999999988765 999999999999999998876


Q ss_pred             c
Q 008535          557 A  557 (562)
Q Consensus       557 ~  557 (562)
                      .
T Consensus       514 ~  514 (521)
T 3l8c_A          514 E  514 (521)
T ss_dssp             -
T ss_pred             C
Confidence            5

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=1.9e-76  Score=621.87  Aligned_cols=481  Identities=21%  Similarity=0.230  Sum_probs=315.9

Q ss_pred             CCCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceE
Q 008535           18 VPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVL   97 (562)
Q Consensus        18 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~   97 (562)
                      ...++.++|+++++.+|+++|+++.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus        73 ~~~~l~~~l~~~a~~~pd~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~  152 (570)
T 4gr5_A           73 AGACVHELFEAQAARAPDAVALLHEADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGY  152 (570)
T ss_dssp             CSCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred             ccCCHHHHHHHHHHHCCCCeEEECCCCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEE
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCch
Q 008535           98 SALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDY  177 (562)
Q Consensus        98 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (562)
                      +|+++.++.+++.++++++++++++++......+..             ...+...+...                    
T Consensus       153 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~-------------~~~~~~~~~~~--------------------  199 (570)
T 4gr5_A          153 TMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLTG-------------TTTLYVEDEAA--------------------  199 (570)
T ss_dssp             EECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSCS-------------SEEEECCC-----------------------
T ss_pred             EEcCCCChHHHHHHHHHhcCCCEEEecchhhhcccC-------------Ccceeeecccc--------------------
Confidence            999999999999999999999999999764321100             01111110000                    


Q ss_pred             hhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHHHH
Q 008535          178 NDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTW  257 (562)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~~~  257 (562)
                           .............++|+++|+|||||||.||||++||+++...... ...+++.++++++..+|++|..+....+
T Consensus       200 -----~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~  273 (570)
T 4gr5_A          200 -----SDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLELF  273 (570)
T ss_dssp             ---------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHHH
T ss_pred             -----ccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHHH
Confidence                 0000011112346789999999999999999999999998765544 4556788999999999999888877888


Q ss_pred             HhHhhceEEEEec--cCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHH-hc
Q 008535          258 AMAAVGGINVCIR--TVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVA-NF  334 (562)
Q Consensus       258 ~~~~~g~~~v~~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~-~~  334 (562)
                      .++..|+++++.+  .+++..+++.++++++|++.++|++++.|++...   ..++++|.+++||++++.+..+.+. .+
T Consensus       274 ~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~~~lr~~~~gG~~l~~~~~~~~~~~~  350 (570)
T 4gr5_A          274 GALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP---EAFEGVRYAITGGEPASVPHVAKARRDH  350 (570)
T ss_dssp             HHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG---GGGTTCSEEEEESSCCCHHHHHHHHHHC
T ss_pred             HHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch---hhCCCceEEEEecccCCHHHHHHHHHhC
Confidence            8999999999876  4789999999999999999999999999987643   4588999999999999998888887 44


Q ss_pred             -CCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchh
Q 008535          335 -GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANT  413 (562)
Q Consensus       335 -~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~  413 (562)
                       ++++++.||+||++++++.......        ........+|.|.++. .++|+|. ++++++.|  +.|||+|+|++
T Consensus       351 ~~~~l~~~YG~TE~~~~~~~~~~~~~--------~~~~~~~~iG~p~~~~-~v~i~d~-~~~~~~~G--~~GEl~v~g~~  418 (570)
T 4gr5_A          351 PALRLGNGYGPAESMGFTTHHAVVAG--------DLSGTALPIGVPLAGK-RAYVLDD-DLKPAANG--ALGELYVAGAG  418 (570)
T ss_dssp             TTCEEEEEECCGGGCSCSEEEECCGG--------GTTSSSCCCBEECTTE-EEEEECT-TSCBCCTT--CEEEEEEEETT
T ss_pred             CCcEEEEeechhhheeeeeeeeeccc--------ccCCCccccceeeCCC-EEEEECC-CCCCCCCC--CcEEEEEeecc
Confidence             7899999999999877665432111        1111224578888777 8888885 67777776  78999999999


Q ss_pred             hhhhhcCCchhhHhhhc---------cceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEE
Q 008535          414 VMLGYFKNPKATEEAFR---------NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAA  484 (562)
Q Consensus       414 ~~~gy~~~~~~~~~~~~---------~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~  484 (562)
                      ++.||+++++.+.+.|.         +|||+|||+|++|+||++++.||.||+||++|++|+|.+||++|.++|.|.+++
T Consensus       419 v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~  498 (570)
T 4gr5_A          419 LAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAA  498 (570)
T ss_dssp             CCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC-------------------------------
T ss_pred             cchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEE
Confidence            99999999999999984         279999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeeCCCCCceeEEEEEeCCC-CCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhh
Q 008535          485 VVGKVDDQLKEVPVAFVKLKEG-REASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGK  552 (562)
Q Consensus       485 v~~~~~~~~~~~~v~~v~~~~~-~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~  552 (562)
                      |++.+++.+++.++++|+..+. ...+.++|+++++++++.|++|+.+++++ ||+|++||++|++|++.
T Consensus       499 Vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~  568 (570)
T 4gr5_A          499 VLAQDSRLGDKQLVAYVVAERADAPPDAAELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGS  568 (570)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             EEEeeCCCCCeEEEEEEEecCCCCCcCHHHHHHHHHhhCccccCCcEEEEcccCCCCCCcCcchHhhhcc
Confidence            9999988888999999987654 34567899999999999999999887655 99999999999999864

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=1.9e-74  Score=602.31  Aligned_cols=495  Identities=24%  Similarity=0.296  Sum_probs=401.3

Q ss_pred             ChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEEec
Q 008535           21 TPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSAL  100 (562)
Q Consensus        21 ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l  100 (562)
                      ++.++|+++++ +|+++|+++.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|+
T Consensus        25 ~~~~~l~~~~~-~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl  103 (529)
T 2v7b_A           25 FAAYLFRLNET-RAGKTAYIDDTGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVA  103 (529)
T ss_dssp             HHHHHHHHTGG-GTTSEEEECSSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEEEEC
T ss_pred             HHHHHHHhhhc-cCCceEEEeCCCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceEEec
Confidence            48899999999 99999999988999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCC-CceeccCCCCCCCCCcccccCCCCCCCCchhh
Q 008535          101 NTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKA-PLLVTIPECDHYQPSTCSVANNFPSGSLDYND  179 (562)
Q Consensus       101 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (562)
                      ++.++.+++.+++++++++++|++....+.+.........      . ..++.++.....           ......+.+
T Consensus       104 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~-----------~~~~~~~~~  166 (529)
T 2v7b_A          104 NTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEH------DGCQLIVSQPRESE-----------PRLAPLFEE  166 (529)
T ss_dssp             CTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---------CCEEEEECC-----------------CCCBHHH
T ss_pred             CcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccc------cCceEEEecccccc-----------cccccchhh
Confidence            9999999999999999999999998877665554332110      1 222222211100           001123444


Q ss_pred             hhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhH-HHHHHHHHhhcCCCCCCeeeeecccccchhhHH-HH
Q 008535          180 LLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGA-YLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCC-TW  257 (562)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l-~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~-~~  257 (562)
                      +........ ...+..++|+++++|||||||.||||.+||+++ ..........+++.++|++++.+|++|.+++.. .+
T Consensus       167 ~~~~~~~~~-~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~  245 (529)
T 2v7b_A          167 LIDAAAPAA-KAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLT  245 (529)
T ss_dssp             HHHTSCCCS-SCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTH
T ss_pred             hhccCCCcc-cccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHH
Confidence            443222111 122356789999999999999999999999998 555555555678899999999999999999875 56


Q ss_pred             HhHhhceEEEEe-ccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHHh-cC
Q 008535          258 AMAAVGGINVCI-RTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVAN-FG  335 (562)
Q Consensus       258 ~~~~~g~~~v~~-~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~~-~~  335 (562)
                      .++..|+++++. +.+++..+++.++++++|+++++|+++..|+...........++|.+++||+++++++.+.+++ ++
T Consensus       246 ~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~g  325 (529)
T 2v7b_A          246 FPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHFG  325 (529)
T ss_dssp             HHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHHHHHHHHHHS
T ss_pred             HHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHHHHHHHHHhC
Confidence            678889998877 5689999999999999999999999999998865443332348999999999999999999984 69


Q ss_pred             CeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhhh
Q 008535          336 FNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVM  415 (562)
Q Consensus       336 ~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~  415 (562)
                      +++++.||+||++.+++......            .....+|.|.++. .++|+|. ++++++.|  +.|||+|+|++++
T Consensus       326 ~~i~~~YG~TE~~~~~~~~~~~~------------~~~~~~G~p~~~~-~~~i~d~-~g~~~~~g--~~GEl~v~g~~~~  389 (529)
T 2v7b_A          326 CEILDGIGSTEMLHIFLSNRAGA------------VEYGTTGRPVPGY-EIELRDE-AGHAVPDG--EVGDLYIKGPSAA  389 (529)
T ss_dssp             CCEEEEEECTTTSSEEEECCTTC------------CCTTSCCEECTTC-EEEEECT-TSCBCCTT--SCEEEEEECTTCC
T ss_pred             CceeeeEchhhcCceeeccccCC------------CccCCcccCCCCC-EEEEECC-CCCCCCCC--CccEEEEecCCcc
Confidence            99999999999976655432110            1234667777777 7888885 67887766  7799999999999


Q ss_pred             hhhcCCchhhHhhhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCCCCCc
Q 008535          416 LGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKE  495 (562)
Q Consensus       416 ~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~  495 (562)
                      .||+++++.+...|.+|||+|||+|++|+||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++. ++..++
T Consensus       390 ~gY~~~~~~t~~~f~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~  468 (529)
T 2v7b_A          390 VMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLV  468 (529)
T ss_dssp             CCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEE
T ss_pred             cccCCChHHHHHhhhcCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCce
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998 656678


Q ss_pred             eeEEEEEeCCCCCC---CHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhh
Q 008535          496 VPVAFVKLKEGREA---SPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRG  551 (562)
Q Consensus       496 ~~v~~v~~~~~~~~---~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~  551 (562)
                      .++++|++.++...   ..++++++++++++.|++|+.+.+++ ||+|++||++|++|++
T Consensus       469 ~~~a~vv~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~  528 (529)
T 2v7b_A          469 KTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLRE  528 (529)
T ss_dssp             EEEEEEEECTTCCCCHHHHHHHHHHHHTTSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC
T ss_pred             EEEEEEEecCCCCcchhHHHHHHHHHHhhcchhhCCeEEEEeccCCCCCccchhHHhHhh
Confidence            89999998765432   24689999999999999999988655 9999999999999986

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=3e-74  Score=607.54  Aligned_cols=477  Identities=15%  Similarity=0.142  Sum_probs=389.7

Q ss_pred             CCCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceE
Q 008535           18 VPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVL   97 (562)
Q Consensus        18 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~   97 (562)
                      ...|+.++|+++++.+|+++|+++.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus        25 ~~~tl~~~~~~~a~~~Pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~~  104 (620)
T 4dg8_A           25 AHPTVVARFSEMAALHPHREAIRDRFGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHHY  104 (620)
T ss_dssp             GSCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTCEE
T ss_pred             CCCCHHHHHHHHHHhCCCCeEEEcCCCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence            45699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCch
Q 008535           98 SALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDY  177 (562)
Q Consensus        98 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (562)
                      +|++|.++.+++.++++++++++++++.........             ..... +.                       
T Consensus       105 vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~-------------~~~~~-~~-----------------------  147 (620)
T 4dg8_A          105 LYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPANG-------------LPCVP-VR-----------------------  147 (620)
T ss_dssp             EECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCTT-------------SCEEE-GG-----------------------
T ss_pred             EeeCccChHHHHHHHHHhCCCcEEEecCcccccccC-------------Cceee-ec-----------------------
Confidence            999999999999999999999999976542210000             00000 00                       


Q ss_pred             hhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHHHH
Q 008535          178 NDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTW  257 (562)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~~~  257 (562)
                       ... . ...........++|+++|+|||||||.||||+++|+++...... ...+.+.++++++...|++|..++...+
T Consensus       148 -~~~-~-~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~  223 (620)
T 4dg8_A          148 -HLP-A-APASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEIW  223 (620)
T ss_dssp             -GCC-C-CCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHHH
T ss_pred             -cCC-c-CCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHHH
Confidence             000 0 00001111245789999999999999999999999998766554 4567889999999999999999999999


Q ss_pred             HhHhhceEEEEec--cCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHH-hc
Q 008535          258 AMAAVGGINVCIR--TVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVA-NF  334 (562)
Q Consensus       258 ~~~~~g~~~v~~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~-~~  334 (562)
                      .++..|+++++.+  .+++..+.+.++++++|+++++|++++.|++..   ...++++|.+++|||+++.+..+.+. .+
T Consensus       224 ~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~l~~lr~v~~gGe~l~~~~~~~~~~~~  300 (620)
T 4dg8_A          224 GALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD---PDCLGGLRQLLTGGDILSVPHVRRALLRH  300 (620)
T ss_dssp             HHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC---GGGGTTCSEEEEESSCCCHHHHHHHHHHC
T ss_pred             HHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC---hhhCCCccEEEEEeCcCCHHHHHHHHHhC
Confidence            9999999998864  579999999999999999999999999998643   34688999999999999988887776 44


Q ss_pred             -CCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchh
Q 008535          335 -GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANT  413 (562)
Q Consensus       335 -~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~  413 (562)
                       ++++++.||+||++..++.......        ........+|.|.++. .++|+|.+....++.|  +.|||+|+|++
T Consensus       301 ~~~~l~n~YG~TE~~~~~~~~~~~~~--------~~~~~~~~iG~p~~~~-~~~i~d~~~~~~~~~g--~~GEl~i~G~~  369 (620)
T 4dg8_A          301 PRLHLVNGYGPTENTTFTCCHVVTDD--------DLEEDDIPIGKAIAGT-AVLLLDEHGQEIAEPD--RAGEIVAFGAG  369 (620)
T ss_dssp             TTCEEEEEECCGGGCSCSEEEECCTG--------GGGSSSCCCBEECTTE-EEEEECTTSCBCCSSS--CCEEEEEEETT
T ss_pred             CCeEEEeeEchhhhhhheEEEecccc--------ccCCCCCCceecccCc-EEEEECccCCCCCCCC--CceEEEEeccc
Confidence             8899999999999877665432211        1112234678888777 8888886433335555  77999999999


Q ss_pred             hhhhhcCCchhhHhhhcc--------ceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEE
Q 008535          414 VMLGYFKNPKATEEAFRN--------GWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAV  485 (562)
Q Consensus       414 ~~~gy~~~~~~~~~~~~~--------g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v  485 (562)
                      +++||+++++.|.+.|.+        +||+|||+|++++||.++++||.||+||++|++|+|.+||++|.++|+|.+++|
T Consensus       370 v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~V  449 (620)
T 4dg8_A          370 LAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCAL  449 (620)
T ss_dssp             CCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEE
T ss_pred             cccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEE
Confidence            999999999999999954        799999999999999999999999999999999999999999999999999999


Q ss_pred             EeeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhh
Q 008535          486 VGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNAT  556 (562)
Q Consensus       486 ~~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~  556 (562)
                      ++.++...++.+ ++++...      ++++++++++||.|++|+.+++++ ||+|++||++|++|++.+.+.
T Consensus       450 v~~~~~~~~~lv-~~~~~~~------~~~~~~l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~~  514 (620)
T 4dg8_A          450 LVRERNGVKQLL-CAWTGKA------DASPQALLRQLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEEP  514 (620)
T ss_dssp             EEEEETTEEEEE-EEEEECT------TCCCHHHHHHSCGGGSCSEEEECSSCCCC----CCHHHHHHHTCSC
T ss_pred             EEEeCCCceEEE-EEEecCh------HHHHHHHHHhChhhcCCcEEEEECcCCCCcccCHhHHHHhhccccc
Confidence            998887544444 4444322      234456677899999999988655 999999999999999887654

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=2.1e-75  Score=650.86  Aligned_cols=512  Identities=23%  Similarity=0.360  Sum_probs=341.2

Q ss_pred             CCChHHHHHHHHHHcCCceEEEEC--CeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccce
Q 008535           19 PLTPIDFLERAAHVYGDATSIIYG--TVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAV   96 (562)
Q Consensus        19 ~~ti~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~   96 (562)
                      ..|+.++|+++++.+|+++|+++.  ++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus        60 ~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~  139 (979)
T 3tsy_A           60 HLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGAT  139 (979)
T ss_dssp             TSCHHHHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCE
T ss_pred             CCCHHHHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCE
Confidence            479999999999999999999986  678999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCc
Q 008535           97 LSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLD  176 (562)
Q Consensus        97 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (562)
                      ++|++|.++.+++.+++++++++++|++....+.+.......        ...++.++.....         ..+.+...
T Consensus       140 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~---------~~~~~~~~  202 (979)
T 3tsy_A          140 ATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD--------GVVIVCIDDNESV---------PIPEGCLR  202 (979)
T ss_dssp             EEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS--------CCEEEECCCCTTS---------CCCTTEEE
T ss_pred             EEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC--------CceEEEeCCcccc---------cCCccccc
Confidence            999999999999999999999999999988766655543321        1223333322110         01112233


Q ss_pred             hhhhhhcccCc--cccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHh----hcCCCCCCeeeeecccccc
Q 008535          177 YNDLLEMGKAD--FEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQIS----RCDVRDMPVFLWTLDMFRC  250 (562)
Q Consensus       177 ~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~----~~~~~~~~~~l~~~pl~~~  250 (562)
                      +.++.......  .....+..++|+++|+|||||||.||||+++|+++.........    .+.+.++|++++.+|++|.
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~  282 (979)
T 3tsy_A          203 FTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHI  282 (979)
T ss_dssp             GGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSH
T ss_pred             HHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHH
Confidence            44443322211  11222356789999999999999999999999999887766544    3567889999999999999


Q ss_pred             hhhHH-HHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHH
Q 008535          251 NGWCC-TWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLE  329 (562)
Q Consensus       251 ~gl~~-~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~  329 (562)
                      +++.. .+.++..|+++++.+.+++..+++.++++++|++.++|+++..|++.......+++++|.+++||+++++++.+
T Consensus       283 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~  362 (979)
T 3tsy_A          283 YALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELED  362 (979)
T ss_dssp             HHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCSSHHH
T ss_pred             HHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHH
Confidence            99864 67778899999999999999999999999999999999999999998877777899999999999999999999


Q ss_pred             HHH-hc-CCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEE
Q 008535          330 QVA-NF-GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEV  407 (562)
Q Consensus       330 ~~~-~~-~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel  407 (562)
                      +++ .+ ++++++.||+||++++++.+.....       .........+|.|.++. .++|+|.+++.+++.|  +.|||
T Consensus       363 ~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~-------~~~~~~~~~~G~p~~~~-~~~i~d~~~~~~~~~g--~~GEl  432 (979)
T 3tsy_A          363 AVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAK-------EPFPVKSGACGTVVRNA-EMKIVDPDTGDSLSRN--QPGEI  432 (979)
T ss_dssp             HHHHHCTTCEEEECEECGGGCSEEEECGGGSS-------SCCCCCTTCCCEECSSC-EEEEECTTSCCBCCTT--CCEEE
T ss_pred             HHHHHCCCCeEEeeechhhhhHHHHhCCCCCC-------CccccCCCCcCcccCCc-EEEEEeCCCCCCCCCC--CccEE
Confidence            998 45 8999999999999877655421111       11122335678888877 8889988788888877  67999


Q ss_pred             EEcchhhhhhhcCCchhhHhhh-ccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEE
Q 008535          408 MFRANTVMLGYFKNPKATEEAF-RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVV  486 (562)
Q Consensus       408 ~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~  486 (562)
                      +|+|+.++.||+++|+.+.+.| .+|||+|||+|++|+||+++++||.||+||++|++|+|.+||++|.++|+|.+++|+
T Consensus       433 ~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv  512 (979)
T 3tsy_A          433 CIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVV  512 (979)
T ss_dssp             EEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC------------------------------
T ss_pred             EEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEE
Confidence            9999999999999999999999 589999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhhc
Q 008535          487 GKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNATA  557 (562)
Q Consensus       487 ~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~~  557 (562)
                      +.+++..++.++++|+..++...+.++++++++++++.|++|+.+++++ ||+|++||++|++|++.+.+..
T Consensus       513 ~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~  584 (979)
T 3tsy_A          513 AMKEEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANGL  584 (979)
T ss_dssp             ------------------------------------------------------------------------
T ss_pred             EecccCCCcEEEEEEEECCCCCCCHHHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHhhc
Confidence            9999888999999999887777788899999999999999999887655 9999999999999999987643

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=3.2e-74  Score=595.47  Aligned_cols=473  Identities=25%  Similarity=0.307  Sum_probs=382.5

Q ss_pred             CCChHHHHHHHHHHcCC-ceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceE
Q 008535           19 PLTPIDFLERAAHVYGD-ATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVL   97 (562)
Q Consensus        19 ~~ti~~~l~~~a~~~p~-~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~   97 (562)
                      -.|+.++|.++++.+|+ ++|+++.++++||+||.+++.++|.+|.     .|++|+++++|+++++++++||+++|+++
T Consensus        21 ~~tl~~~l~~~a~~~p~d~~Al~~~~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~~Ga~~   95 (505)
T 3nyq_A           21 MSSLFPALSPAPTGAPADRPALRFGERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAGVAA   95 (505)
T ss_dssp             ---CCTTTSSCCCSGGGGSEEEEETTEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHHHHTCCE
T ss_pred             cchhHHHHHHHHHhCCCCCeEEEECCeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHHhCCEE
Confidence            34788999999999887 9999999999999999999999998875     38899999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCch
Q 008535           98 SALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDY  177 (562)
Q Consensus        98 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (562)
                      +|+++.++.+++.+++++++++++|++......     ....       ....+.+...                     
T Consensus        96 vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~-----~~~~-------~~~~~~~~~~---------------------  142 (505)
T 3nyq_A           96 VPLNPKSGDKELAHILSDSAPSLVLAPPDAELP-----PALG-------ALERVDVDVR---------------------  142 (505)
T ss_dssp             EEECTTCCHHHHHHHHHHHCCSEEEECTTCCCC-----GGGT-------TSEEEECCTT---------------------
T ss_pred             EEcCCCCCHHHHHHHHHHCCCCEEEECCccccc-----hhhc-------cccccccccc---------------------
Confidence            999999999999999999999999998652100     0000       0001111000                     


Q ss_pred             hhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhH-HH
Q 008535          178 NDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWC-CT  256 (562)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~-~~  256 (562)
                             ...........++|+++|+|||||||.||||+++|+++..........+++.++|++++.+|++|.+|+. ..
T Consensus       143 -------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~  215 (505)
T 3nyq_A          143 -------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGI  215 (505)
T ss_dssp             -------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTT
T ss_pred             -------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHH
Confidence                   0000111234578999999999999999999999999999999888899999999999999999999986 47


Q ss_pred             HHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhcccc---ccccccceEEEEEeCCCChHHHHHHHH-
Q 008535          257 WAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASAS---DQNQLQRKVIIVIAGVLPTIEVLEQVA-  332 (562)
Q Consensus       257 ~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~---~~~~l~~l~~i~~~g~~l~~~~~~~~~-  332 (562)
                      +.++..|+++++.+.+++..+++.+ ++++|+++++|+++..|++....   ....++++|.+++||++++.+..+++. 
T Consensus       216 ~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~  294 (505)
T 3nyq_A          216 LGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAA  294 (505)
T ss_dssp             HHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHH
T ss_pred             HHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHH
Confidence            8888999999999999999999999 88999999999999999875322   234578899999999999999999998 


Q ss_pred             hcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccC-CCCceeEEEEcc
Q 008535          333 NFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPH-DGKTLGEVMFRA  411 (562)
Q Consensus       333 ~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~-~~~~~Gel~v~~  411 (562)
                      .++.++++.||+||++..++....            .......+|.|.++. .++|+|. ++.+++. ++++.|||+|+|
T Consensus       295 ~~~~~~~~~YG~TE~~~~~~~~~~------------~~~~~~~vG~p~~~~-~~~i~d~-~g~~~~~~~~g~~GEl~v~g  360 (505)
T 3nyq_A          295 ATGRRVIERYGMTETLMNTSVRAD------------GEPRAGTVGVPLPGV-ELRLVEE-DGTPIAALDGESVGEIQVRG  360 (505)
T ss_dssp             HHSCCCEEEEEETTTEEEEECCTT------------SCCCTTCCCEECTTC-EEEEC------CCCCCCSCCCEEEEEES
T ss_pred             hcCCeeecccchhhcccccccCCC------------CCCCCCCcccCCCCC-EEEEECC-CCCCcccCCCCceEEEEEec
Confidence            569999999999999765544221            112234678887777 7888886 5666665 334789999999


Q ss_pred             hhhhhhhcCCchhhHhhhc-cceeeeCceeEEcCCCcEEEeccc-cceeecCCeEechHHHHHHHhcCCCceeEEEEeee
Q 008535          412 NTVMLGYFKNPKATEEAFR-NGWYHTGDLAVRNPDGYVQMKDRR-KDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKV  489 (562)
Q Consensus       412 ~~~~~gy~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~GR~-~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~  489 (562)
                      ++++.||+++++.+.+.|. +|||+|||+|++|+||.+++.||. ||+||++|.+|+|.+||++|.++|+|.+++|++.+
T Consensus       361 ~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~  440 (505)
T 3nyq_A          361 PNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEP  440 (505)
T ss_dssp             TTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEE
T ss_pred             CchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeE
Confidence            9999999999999999995 899999999999999999999998 58999999999999999999999999999999999


Q ss_pred             CCCCCceeEEEEEeCC-CCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhh
Q 008535          490 DDQLKEVPVAFVKLKE-GREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRG  551 (562)
Q Consensus       490 ~~~~~~~~v~~v~~~~-~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~  551 (562)
                      ++..++.++++|++.+ ....+.++++++++++|+.|++|+.+.+++ ||+|++||++|++|++
T Consensus       441 ~~~~g~~l~a~vv~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~  504 (505)
T 3nyq_A          441 DPDLGERIVAWIVPADPAAPPALGTLADHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNR  504 (505)
T ss_dssp             ETTTEEEEEEEEEESSTTSCCCHHHHHHHHHHHTCGGGSCSEEEECSCCCC-------------
T ss_pred             CCCCCcEEEEEEEECCCCCCCCHHHHHHHHHhhCCCCcCccEEEEECCCCCCCCcCeeHHhhcc
Confidence            9999999999999876 345678899999999999999999988655 9999999999999986

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=7.4e-73  Score=599.17  Aligned_cols=507  Identities=16%  Similarity=0.139  Sum_probs=405.9

Q ss_pred             CCCCChHHHHHHHHHHcCCceEEEEC----CeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhh
Q 008535           17 NVPLTPIDFLERAAHVYGDATSIIYG----TVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPM   92 (562)
Q Consensus        17 ~~~~ti~~~l~~~a~~~p~~~a~~~~----~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~   92 (562)
                      .+.+|+.++|+++++.+|+++|+++.    ++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||++
T Consensus         8 ~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~   87 (590)
T 3kxw_A            8 LQCQSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLY   87 (590)
T ss_dssp             HTCSSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred             cCcccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHH
Confidence            35679999999999999999999873    47899999999999999999999999999999999999999999999999


Q ss_pred             ccceEEecCCCCC---HHHHHHHHhhCCceEEEEeccchHHHHHHH-hhcCCCCcCCCCCceeccCCCCCCCCCcccccC
Q 008535           93 AGAVLSALNTRLD---SATLASILRQLEAKIIFVDYQFVEVVQNAL-DILSPNHKCDKAPLLVTIPECDHYQPSTCSVAN  168 (562)
Q Consensus        93 ~G~~~v~l~~~~~---~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (562)
                      +|++++|+++..+   .+++.++++.+++++++++.+....+.... .....      ...+..+               
T Consensus        88 ~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~------~~~~~~~---------------  146 (590)
T 3kxw_A           88 AGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPK------FLKIPAI---------------  146 (590)
T ss_dssp             TTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCE------ETTEEEE---------------
T ss_pred             hCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhccc------cccccee---------------
Confidence            9999999999884   578999999999999999977554433211 00000      0000000               


Q ss_pred             CCCCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccc
Q 008535          169 NFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMF  248 (562)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~  248 (562)
                             ....+.... ..........++|+++|+|||||||.||||.+||+++..........+++.++|++++.+|++
T Consensus       147 -------~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~  218 (590)
T 3kxw_A          147 -------ALESIELNR-SSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPH  218 (590)
T ss_dssp             -------EGGGCCGGG-GGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTT
T ss_pred             -------echhccccc-cccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCC
Confidence                   000100000 111112235678999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhHH-HHHhHhhceEEEEeccC----CHHHHHHHHHhcCeEEEEcchHHHHHHHhcc---ccccccccceEEEEEeC
Q 008535          249 RCNGWCC-TWAMAAVGGINVCIRTV----SAKIIFDSILIHKVTHLCGQPRILNMIANAS---ASDQNQLQRKVIIVIAG  320 (562)
Q Consensus       249 ~~~gl~~-~~~~~~~g~~~v~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~---~~~~~~l~~l~~i~~~g  320 (562)
                      |.+|+.. ++.++..|+++++.+++    ++..+++.++++++|++.++|.++..+++..   .....+++++|.+++||
T Consensus       219 h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg  298 (590)
T 3kxw_A          219 HDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGA  298 (590)
T ss_dssp             SHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECS
T ss_pred             cchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCC
Confidence            9999886 77788889998888764    8999999999999999999999999988753   33445789999999999


Q ss_pred             CCChHHHHHHHHh-c------CCeeeccccCccccCcccccccCCCCCCCcC-------------C--ccccccccccCc
Q 008535          321 VLPTIEVLEQVAN-F------GFNIRHAYGMTEVLGPAIVRQWKPEGESSAL-------------D--HEHEMTKHREGL  378 (562)
Q Consensus       321 ~~l~~~~~~~~~~-~------~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~-------------~--~~~~~~~~~~g~  378 (562)
                      +++++++.+.|.+ +      +.++++.||+||++++++.............             .  .........+|.
T Consensus       299 ~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  378 (590)
T 3kxw_A          299 EPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGN  378 (590)
T ss_dssp             SCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCE
T ss_pred             CCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCC
Confidence            9999999998873 3      2369999999999887765432211100000             0  001112234444


Q ss_pred             cccccccceecccCCcccccCCCCceeEEEEcchhhhhhhcCCchhhHhhhcc-------c--eeeeCceeEEcCCCcEE
Q 008535          379 NNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRN-------G--WYHTGDLAVRNPDGYVQ  449 (562)
Q Consensus       379 ~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-------g--~~~TGD~~~~~~~g~l~  449 (562)
                      |   .++++|++.+++.+++.|  +.|||+|+||+++.||+++++.|.+.|.+       |  ||+|||+|++| +|.++
T Consensus       379 p---~~~v~i~d~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~  452 (590)
T 3kxw_A          379 P---IQEVKIIDPDTLIPCDFD--QVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELY  452 (590)
T ss_dssp             E---SSEEEEECTTTCCBCCTT--BCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEE
T ss_pred             C---CCCeEEEcCCCCcCCCCC--CEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEE
Confidence            4   445889998778888776  77999999999999999999999999953       5  99999999999 99999


Q ss_pred             EeccccceeecCCeEechHHHHHHH-hcCCCce--eEEEEeeeCCCCCceeEEEEEeCCCC--CCCHHHHHHHHhccCCC
Q 008535          450 MKDRRKDIIISGAEIISSLEVEAVL-LSNPKVL--EAAVVGKVDDQLKEVPVAFVKLKEGR--EASPEELVTFCGDELPS  524 (562)
Q Consensus       450 ~~GR~~d~i~~~G~~v~~~~iE~~l-~~~~~v~--~~~v~~~~~~~~~~~~v~~v~~~~~~--~~~~~~l~~~~~~~l~~  524 (562)
                      +.||.||+||++|++|+|.+||++| ..+|.|.  +++|++++++. ++.++++++..++.  ..+.+++.+++++.++.
T Consensus       453 ~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~  531 (590)
T 3kxw_A          453 VTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYE  531 (590)
T ss_dssp             EEEESSCHHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEcCccceEEECCEecCHHHHHHHHHhcCccccCccEEEEEecCCC-CceEEEEEEeccccccchhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999 7789998  89999988876 67788888887653  33567888999888875


Q ss_pred             -CCCCc-EEEee---cccCCCCCcchHHHHhhhhhhhccc
Q 008535          525 -CMVPR-AIFFE---DIPVNSTGKVQKFVLRGKVNATAVG  559 (562)
Q Consensus       525 -~~~p~-~i~~~---~lP~t~~GKv~r~~l~~~~~~~~~~  559 (562)
                       +++|. .+.++   +||+|++||++|++|++++.++..+
T Consensus       532 ~~~~p~~~i~~v~~~~lP~t~sGKi~R~~L~~~~~~~~~~  571 (590)
T 3kxw_A          532 NHQLEVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLDKTLP  571 (590)
T ss_dssp             HHSCCCCEEEEEETTCSCCCSCHHHHHHHHHHHHHHTCSC
T ss_pred             HcCCceeEEEEECCCccCcCCCcHHHHHHHHHHHHcCCCc
Confidence             77775 45544   5999999999999999999877643

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=1.1e-72  Score=593.31  Aligned_cols=494  Identities=18%  Similarity=0.177  Sum_probs=309.9

Q ss_pred             cCCCCCChHHHHHHHHHHcCCceEEEECC----------eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHH
Q 008535           15 ANNVPLTPIDFLERAAHVYGDATSIIYGT----------VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALY   84 (562)
Q Consensus        15 ~~~~~~ti~~~l~~~a~~~p~~~a~~~~~----------~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~   84 (562)
                      .....+|+.++|+++++.+|+++|+++.+          +++||+||.++++++|+.|.+.|+ +||+|+++++|+++++
T Consensus        15 ~~~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~   93 (562)
T 3ite_A           15 QYTSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAF   93 (562)
T ss_dssp             ---CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHH
T ss_pred             eecccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHH
Confidence            33567899999999999999999998743          789999999999999999999999 7999999999999999


Q ss_pred             HHHHHhhhccceEEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcc
Q 008535           85 KLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTC  164 (562)
Q Consensus        85 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (562)
                      +++|||+++|++++|+++.++.+++.+++++++++++|++......+.     ...      ...++...          
T Consensus        94 ~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~-----~~~------~~~~~~~~----------  152 (562)
T 3ite_A           94 AIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE-----LPP------ETKVLDTK----------  152 (562)
T ss_dssp             HHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC-----CCT------TCEEEETT----------
T ss_pred             HHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc-----cCc------cceeeccc----------
Confidence            999999999999999999999999999999999999999865432110     000      01111100          


Q ss_pred             cccCCCCCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhh--------cCCC
Q 008535          165 SVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISR--------CDVR  236 (562)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~--------~~~~  236 (562)
                               ...+.+........ .......++++++|+|||||||.||||++||+++..........        +.+.
T Consensus       153 ---------~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~  222 (562)
T 3ite_A          153 ---------NQSFIENLSTQDTS-DILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELG  222 (562)
T ss_dssp             ---------CHHHHHHHHHSCCS-CCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCT
T ss_pred             ---------chhhhhhccccccc-ccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccC
Confidence                     01122222111111 11123456788999999999999999999999988776654432        4577


Q ss_pred             CCCeeeeecccccchhhHHHHHhHhhceEEEEeccC-CHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEE
Q 008535          237 DMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCIRTV-SAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVI  315 (562)
Q Consensus       237 ~~~~~l~~~pl~~~~gl~~~~~~~~~g~~~v~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~  315 (562)
                      ..+++++..|++|..++...+.++..|+++++.+.. .+..+.+.++++++|+++++|++++.+....    .+++++|.
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~~----~~~~~lr~  298 (562)
T 3ite_A          223 GVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLVP----EDAPHLVY  298 (562)
T ss_dssp             TTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCCG----GGSTTCCE
T ss_pred             cCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccCc----cccCceEE
Confidence            889999999999999888888889999998887654 3578889999999999999999988875433    46889999


Q ss_pred             EEEeCCCChHHHHHHHHh-cCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCc
Q 008535          316 IVIAGVLPTIEVLEQVAN-FGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTM  394 (562)
Q Consensus       316 i~~~g~~l~~~~~~~~~~-~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~  394 (562)
                      +++||+++++++.+.+++ +++++++.||+||++..++.......           .....+|.|.++. .+++++.+.+
T Consensus       299 ~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~-----------~~~~~~G~p~~~~-~~~i~d~~~~  366 (562)
T 3ite_A          299 LGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPD-----------SDTRCIGHPLGDS-VAHVLAPGSN  366 (562)
T ss_dssp             EEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEECCTT-----------SCTTEEEEECTTC-EEEEECTTSS
T ss_pred             EEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeeecCC-----------CCCccccccCCCC-eEEEEeCCCC
Confidence            999999999999999985 58999999999999876665432211           1123567777776 7888887778


Q ss_pred             ccccCCCCceeEEEEcchhhhhhhcCCchhhHhhhccc--eeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHH
Q 008535          395 KSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNG--WYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEA  472 (562)
Q Consensus       395 ~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g--~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~  472 (562)
                      .+++.|  +.|||+|+|+.++.||+++++.+...+.+|  ||+|||+|++|+||++++.||.||+||++|++|+|.+||+
T Consensus       367 ~~~~~g--~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~  444 (562)
T 3ite_A          367 EHVKKG--MAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSE  444 (562)
T ss_dssp             CBCCTT--SCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECTTSCEEEEEEC------------------
T ss_pred             CCCCCC--CceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHH
Confidence            878776  779999999999999999999888766666  9999999999999999999999999999999999999999


Q ss_pred             HHhcC-CCceeEEEEeeeCCCCCceeEEEEEeCCCCCC-------------CHHHHHHHHhccCCCCCCCcEEEeec-cc
Q 008535          473 VLLSN-PKVLEAAVVGKVDDQLKEVPVAFVKLKEGREA-------------SPEELVTFCGDELPSCMVPRAIFFED-IP  537 (562)
Q Consensus       473 ~l~~~-~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~-------------~~~~l~~~~~~~l~~~~~p~~i~~~~-lP  537 (562)
                      +|.++ +.+.+++|++.+++..++..++.++...+...             ..++|+++++++|+.|++|+.+.+++ ||
T Consensus       445 ~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP  524 (562)
T 3ite_A          445 VIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIP  524 (562)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHhcCCCceeEEEEEecCCCCcceEEEEEEecccccccccccccccchhhHHHHHHHHHHhhCCcccCCcEEEEeccCC
Confidence            99998 88889998888888777766665554433222             23589999999999999999988655 99


Q ss_pred             CC-CCCcchHHHHhhhhhhhcc
Q 008535          538 VN-STGKVQKFVLRGKVNATAV  558 (562)
Q Consensus       538 ~t-~~GKv~r~~l~~~~~~~~~  558 (562)
                      +| ++||++|++|++++.+...
T Consensus       525 ~t~~~GKi~r~~L~~~~~~~~~  546 (562)
T 3ite_A          525 LRDTSAKTDAKALEHMFHTLSL  546 (562)
T ss_dssp             ----------------------
T ss_pred             CCCCCCcchHHHHHHHHhccCH
Confidence            98 9999999999999987653

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=2.6e-70  Score=624.53  Aligned_cols=487  Identities=20%  Similarity=0.246  Sum_probs=409.4

Q ss_pred             CCCCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccce
Q 008535           17 NVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAV   96 (562)
Q Consensus        17 ~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~   96 (562)
                      .+..++.++|+++++.+|+++|+++.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus       461 ~~~~~l~~~~~~~~~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~~  540 (1304)
T 2vsq_A          461 HETKPLTYWFKEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAA  540 (1304)
T ss_dssp             CCCCCHHHHHHHHHHHCTTSEEEESSSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTTCE
T ss_pred             CCCCCHHHHHHHHHHhCCCCeEEEECCeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHCCE
Confidence            34578999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCc
Q 008535           97 LSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLD  176 (562)
Q Consensus        97 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (562)
                      ++|++|.++.+++.++++++++++++++......+..    +..      ....+.+++..                   
T Consensus       541 ~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~----~~~------~~~~~~~~~~~-------------------  591 (1304)
T 2vsq_A          541 YLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAE----LPY------TGTTLFIDDQT-------------------  591 (1304)
T ss_dssp             EEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTT----CCC------CSEEEESSCGG-------------------
T ss_pred             EEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhc----cCC------CCcEEEecccc-------------------
Confidence            9999999999999999999999999998764322110    000      11111111100                   


Q ss_pred             hhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHHH
Q 008535          177 YNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCT  256 (562)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~~  256 (562)
                        ....   ..........+++++||+|||||||.||||+++|+++.+. .+....+++.++++++...|++|..+...+
T Consensus       592 --~~~~---~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~  665 (1304)
T 2vsq_A          592 --RFEE---QASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTFDF  665 (1304)
T ss_dssp             --GGGS---CSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHHHH
T ss_pred             --cccc---ccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHHHH
Confidence              0000   0011112346789999999999999999999999998765 445566788999999999999999988889


Q ss_pred             HHhHhhceEEEEecc---CCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHHh
Q 008535          257 WAMAAVGGINVCIRT---VSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVAN  333 (562)
Q Consensus       257 ~~~~~~g~~~v~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~~  333 (562)
                      +.++..|+++++.+.   .++..+.+.+.++++|+++.+|++++.|....   ...++++|.+++|||+++.+..+.+.+
T Consensus       666 ~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~---~~~~~~lr~~~~gGe~l~~~~~~~~~~  742 (1304)
T 2vsq_A          666 YASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG---EDWMKGLRCILFGGERASVPHVRKALR  742 (1304)
T ss_dssp             HHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC---SHHHHTCSEEEEESSCCCHHHHHHHHH
T ss_pred             HHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc---hhcCCCccEEEEecCCCCHHHHHHHHH
Confidence            999999999999864   68999999999999999999999999997653   234678999999999999999988874


Q ss_pred             -c-CCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcc
Q 008535          334 -F-GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRA  411 (562)
Q Consensus       334 -~-~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~  411 (562)
                       + +.++++.||+||++..++.......        ........+|.|.++. .++|+|. .++++|.|  +.|||+|+|
T Consensus       743 ~~~~~~l~n~YG~TE~~~~~~~~~~~~~--------~~~~~~~~iG~p~~~~-~~~i~d~-~~~~~p~G--~~GEl~i~G  810 (1304)
T 2vsq_A          743 IMGPGKLINCYGPTEGTVFATAHVVHDL--------PDSISSLPIGKPISNA-SVYILNE-QSQLQPFG--AVGELCISG  810 (1304)
T ss_dssp             HHCTTCEEEEECCGGGSSCSEEEECCCC--------CSSCSSCCCBEECTTE-EEEEECT-TSCBCCTT--CCEEEEEEE
T ss_pred             hCCCCEEEEeEChhHHhHHheeeeccCc--------cccCCCCCCceeeCCC-EEEEECC-CcCCCCCC--CceEEEEec
Confidence             4 4789999999999877665432210        0111234678887777 7888886 67788776  779999999


Q ss_pred             hhhhhhhcCCchhhHhhhc-------cceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEE
Q 008535          412 NTVMLGYFKNPKATEEAFR-------NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAA  484 (562)
Q Consensus       412 ~~~~~gy~~~~~~~~~~~~-------~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~  484 (562)
                      +++++||+++|+.|.++|.       ++||||||+|++++||.++++||.||+||++|.+|+|.|||++|.++|+|.+++
T Consensus       811 ~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~  890 (1304)
T 2vsq_A          811 MGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAV  890 (1304)
T ss_dssp             TTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEE
T ss_pred             cccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEE
Confidence            9999999999999999983       359999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhh
Q 008535          485 VVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNA  555 (562)
Q Consensus       485 v~~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~  555 (562)
                      |++.++...++.++++++...  ..+.++++++++++||.|++|..+++.+ ||+|+|||++|++|++....
T Consensus       891 V~~~~~~~~~~~l~a~vv~~~--~~~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidR~~L~~~~~~  960 (1304)
T 2vsq_A          891 VVADRHESGDASINAYLVNRT--QLSAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKPDQD  960 (1304)
T ss_dssp             EEEECCSSSCCEEEEEEECSS--SSCHHHHHHHHHHHSCGGGSCSEEEEESCCCCCSSCSSCCSCCCCCCGG
T ss_pred             EEEEecCCCCEEEEEEEeCCC--CCCHHHHHHHHHHhChHhhhccEEEEecccCCCCCcccCHhhcCCcchh
Confidence            999988888889999998754  4678899999999999999999988655 99999999999999876543

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=100.00  E-value=2.3e-58  Score=476.02  Aligned_cols=405  Identities=18%  Similarity=0.187  Sum_probs=313.9

Q ss_pred             cccCCCCCChHHHHHHHHHHcCCceEEEECC---------eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH
Q 008535           13 ASANNVPLTPIDFLERAAHVYGDATSIIYGT---------VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPAL   83 (562)
Q Consensus        13 ~~~~~~~~ti~~~l~~~a~~~p~~~a~~~~~---------~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~   83 (562)
                      ...+.+.+|+.++|+++++.+|+++|+++.+         +++||+||.++++++|++|.+.|+ +||+|+++++|++++
T Consensus        17 ~~~~~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~   95 (480)
T 3t5a_A           17 RGSHMSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEY   95 (480)
T ss_dssp             -------CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHH
T ss_pred             ccCCCCcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHH
Confidence            4455677899999999999999999999865         789999999999999999999996 999999999999999


Q ss_pred             HHHHHHhhhccceEEecCC---CCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCC
Q 008535           84 YKLHFAVPMAGAVLSALNT---RLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQ  160 (562)
Q Consensus        84 ~~~~lA~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (562)
                      ++++|||+++|++++|+++   .++.+++.++++.++++++|++......+..........    ....++.++...   
T Consensus        96 ~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~---  168 (480)
T 3t5a_A           96 VVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGE----SPPSIIEVDLLD---  168 (480)
T ss_dssp             HHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC----------CCEEEEGGGSC---
T ss_pred             HHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccc----cccceeEecccc---
Confidence            9999999999999999999   778999999999999999999998777665433221110    011222221110   


Q ss_pred             CCcccccCCCCCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCC---
Q 008535          161 PSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRD---  237 (562)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~---  237 (562)
                                           .. ...........++++++|+|||||||.||||++||+++..+.......+.+..   
T Consensus       169 ---------------------~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~  226 (480)
T 3t5a_A          169 ---------------------LD-APNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGI  226 (480)
T ss_dssp             ---------------------TT-CC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTC
T ss_pred             ---------------------cc-cccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccC
Confidence                                 00 00011112345789999999999999999999999999998888888887777   


Q ss_pred             ---CCeeeeecccccchhhH-HHHHhHhhceEEEEeccC----CHHHHHHHHHhcCeEEEEcchHHHHHHHhc----ccc
Q 008535          238 ---MPVFLWTLDMFRCNGWC-CTWAMAAVGGINVCIRTV----SAKIIFDSILIHKVTHLCGQPRILNMIANA----SAS  305 (562)
Q Consensus       238 ---~~~~l~~~pl~~~~gl~-~~~~~~~~g~~~v~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~----~~~  305 (562)
                         ++++++.+|++|.+|+. .++.++..|+++++.++.    ++..+++.++++++| +..+|.++..++..    ...
T Consensus       227 ~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~  305 (480)
T 3t5a_A          227 PPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDM  305 (480)
T ss_dssp             CCTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGG
T ss_pred             CCCCCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccc
Confidence               89999999999999976 467788889999988653    899999999999999 88889888888764    334


Q ss_pred             ccccccceEEEEEeCCCChHHHHHHHHh-cC------CeeeccccCccccCcccccccCCCCCCCc-------------C
Q 008535          306 DQNQLQRKVIIVIAGVLPTIEVLEQVAN-FG------FNIRHAYGMTEVLGPAIVRQWKPEGESSA-------------L  365 (562)
Q Consensus       306 ~~~~l~~l~~i~~~g~~l~~~~~~~~~~-~~------~~l~~~YG~tE~~~~~~~~~~~~~~~~~~-------------~  365 (562)
                      ...+++++|.+++||+++++++.++|.+ ++      ..+++.||+||+++.++............             .
T Consensus       306 ~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  385 (480)
T 3t5a_A          306 AGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPC  385 (480)
T ss_dssp             TTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCC
T ss_pred             cccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeec
Confidence            4567899999999999999999999984 42      36999999999988776654322111000             0


Q ss_pred             CccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhhhhhhcCCchhhHhhh------------ccce
Q 008535          366 DHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAF------------RNGW  433 (562)
Q Consensus       366 ~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~------------~~g~  433 (562)
                      ..........+|.|.+ . .++|+|.+++++++.|  +.|||+|+|++++.||+++|+.|.+.|            .+||
T Consensus       386 ~~~~~~~~~~~G~p~~-~-~~~ivd~~~g~~~~~g--~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w  461 (480)
T 3t5a_A          386 AGGGATSLISYMLPRS-P-IVRIVDSDTCIECPDG--TVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPW  461 (480)
T ss_dssp             CSSSCEEEECEECCSS-S-EEEEEETTTTEECCTT--BCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCB
T ss_pred             CCCCcceeeecCcccC-C-EEEEEcCCCCcCCCCC--CEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCe
Confidence            0011233457788888 5 8999998778888877  789999999999999999999999999            3569


Q ss_pred             eeeCceeEEcCCCcEEEecc
Q 008535          434 YHTGDLAVRNPDGYVQMKDR  453 (562)
Q Consensus       434 ~~TGD~~~~~~~g~l~~~GR  453 (562)
                      |+|||+|++| ||+++|+||
T Consensus       462 ~~TGDlg~~d-dG~l~~~GR  480 (480)
T 3t5a_A          462 LRTGDSGFVT-DGKMFIIGR  480 (480)
T ss_dssp             EEEEEEEEEE-TTEEEECC-
T ss_pred             eeccceeeEE-CCEEEEeCC
Confidence            9999999997 999999998

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=100.00  E-value=4.5e-54  Score=423.39  Aligned_cols=317  Identities=17%  Similarity=0.134  Sum_probs=261.5

Q ss_pred             CCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHHHHHhHhhceEEEEeccCCHHH
Q 008535          197 CDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCIRTVSAKI  276 (562)
Q Consensus       197 ~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~~~~~~~~g~~~v~~~~~~~~~  276 (562)
                      +|+++|+|||||||.||||++||+++.+++......+++.++|++++++|++|.+|+..++.++..|+++++.++.  ..
T Consensus        37 d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~--~~  114 (358)
T 4gs5_A           37 GAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPT--AN  114 (358)
T ss_dssp             TCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCC--SC
T ss_pred             CCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcc--cc
Confidence            6899999999999999999999999999999999999999999999999999999999999999999998887542  12


Q ss_pred             HHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHHhcCCeeeccccCccccCccccccc
Q 008535          277 IFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQW  356 (562)
Q Consensus       277 ~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~  356 (562)
                      .++.++++++|++.++|++++.|++.... ...++++|.+++||+++++++.++++++++++++.||+||+++.++....
T Consensus       115 ~~~~i~~~~~t~~~~~P~~l~~ll~~~~~-~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~~~YG~TEt~~~~~~~~~  193 (358)
T 4gs5_A          115 PLAGLDHADFDFVAMVPMQLQSILENSAT-SGQVDRLGKVLLGGAPVNHALAMQISDLAMPVYQSYGMTETVSHVALKAL  193 (358)
T ss_dssp             TTTTCSSCCCSEEEECHHHHHHHHHCTTT-GGGGGGGCSEEECSSCCCHHHHHHHHTCSSCEEEEEECGGGSSEEEEEEC
T ss_pred             HHHHHHHhCCeEEEcChHHHHHhhccccc-cccCCcceEEEEcccCCCchheecccccCceEEeccccccccceeecccc
Confidence            35678899999999999999999887653 35689999999999999999999999999999999999999876665432


Q ss_pred             CCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhhhhhhcCCchhhHhhhccceeee
Q 008535          357 KPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHT  436 (562)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~T  436 (562)
                      ...            .....|.+.+   ++.+...           +.|||+++|+..               .+|||+|
T Consensus       194 ~~~------------~~g~~~~~~p---gv~~~~~-----------~~Gel~~~g~~~---------------~~g~~~T  232 (358)
T 4gs5_A          194 NGP------------EASELYVFLP---GIQYGVD-----------ERGCLHISGAVT---------------NGQTVQT  232 (358)
T ss_dssp             SST------------TCCSCEEECT---TCEEEEC-----------TTSEEEEESGGG---------------TTCCEEE
T ss_pred             ccc------------ccceeeccCC---CeEEEec-----------CcCceEEecccc---------------cCcceec
Confidence            211            1112233332   3333222           339999998643               3689999


Q ss_pred             CceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHh---cCCCceeEEEE-eeeCCCCCceeEEEEEeCCCCCCCHH
Q 008535          437 GDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLL---SNPKVLEAAVV-GKVDDQLKEVPVAFVKLKEGREASPE  512 (562)
Q Consensus       437 GD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~---~~~~v~~~~v~-~~~~~~~~~~~v~~v~~~~~~~~~~~  512 (562)
                      ||+|++|++| ++++||.||+||++|++|+|.+||++|.   +||.|.+++|+ +.+++..++.++++|+.... ....+
T Consensus       233 GDlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~-~~~~~  310 (358)
T 4gs5_A          233 NDLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMP-EALTE  310 (358)
T ss_dssp             EEEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCC-HHHHH
T ss_pred             CCccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCC-CcCHH
Confidence            9999999888 6677999999999999999999998774   57999998876 67788888999988875443 34567


Q ss_pred             HHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhhccc
Q 008535          513 ELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNATAVG  559 (562)
Q Consensus       513 ~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~~~~  559 (562)
                      +|+++++++|+.|++|+.+++++ ||+|++||++|++|++.+.+..+|
T Consensus       311 ~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~~~G  358 (358)
T 4gs5_A          311 RLTAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDSSNG  358 (358)
T ss_dssp             HHHHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC-----
T ss_pred             HHHHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhhcCC
Confidence            89999999999999999888655 999999999999999999988765

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=100.00  E-value=9.8e-48  Score=390.74  Aligned_cols=326  Identities=18%  Similarity=0.183  Sum_probs=262.8

Q ss_pred             CCC-CCceEEEeccCCCCCCCceEeechhHHHHHHHH---HhhcCCCCCCeeeeecccccchhh-HHHHHhHhhceEEEE
Q 008535          194 NHE-CDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQ---ISRCDVRDMPVFLWTLDMFRCNGW-CCTWAMAAVGGINVC  268 (562)
Q Consensus       194 ~~~-~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~---~~~~~~~~~~~~l~~~pl~~~~gl-~~~~~~~~~g~~~v~  268 (562)
                      ..+ +++++++|||||||.||+|.+||+++.......   ...+++.++|+++...|+.|..+. ...+.++..|+++++
T Consensus        82 ~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~  161 (436)
T 3qov_A           82 GDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVP  161 (436)
T ss_dssp             SCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEEC
T ss_pred             CCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEe
Confidence            344 789999999999999999999999987766554   334588999999999998665554 456777888999998


Q ss_pred             eccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhcccccccc--ccceEEEEEeCCCChHHHHHHHHh-cCCeeeccccCc
Q 008535          269 IRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQ--LQRKVIIVIAGVLPTIEVLEQVAN-FGFNIRHAYGMT  345 (562)
Q Consensus       269 ~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~--l~~l~~i~~~g~~l~~~~~~~~~~-~~~~l~~~YG~t  345 (562)
                      .+..++..+++.++++++|+++++|+++..|++........  ++++|.+++||+++++++.+.+++ +++++++.||+|
T Consensus       162 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~T  241 (436)
T 3qov_A          162 AAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMT  241 (436)
T ss_dssp             CCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEG
T ss_pred             CCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcch
Confidence            88889999999999999999999999999998876544443  789999999999999999999984 599999999999


Q ss_pred             cccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhhhhhhcCCchhh
Q 008535          346 EVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKAT  425 (562)
Q Consensus       346 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~  425 (562)
                      |+++.++......              ....+.+.+.. .++|+|.+++.+++.|  +.|||+|+|.            +
T Consensus       242 E~~~~~~~~~~~~--------------~~g~~~~~~~~-~v~i~d~~~g~~~~~g--~~Gel~v~~~------------~  292 (436)
T 3qov_A          242 EMNGPGVAFECQE--------------QNGMHFWEDCY-LVEIIDPETGEPVPEG--EIGELVLTTL------------D  292 (436)
T ss_dssp             GGTEEEEEEECTT--------------CSSEEECTTTE-EEEEECTTTCSBCSTT--CCEEEEEEES------------S
T ss_pred             hhcCCeeEEecCC--------------CCeeEEccCce-EEEEEECCCCCCCCCC--CceEEEEecc------------C
Confidence            9965533322110              01122333344 7888887788888877  6799999983            2


Q ss_pred             HhhhccceeeeCceeEEcCCC------c---EEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCCCCCce
Q 008535          426 EEAFRNGWYHTGDLAVRNPDG------Y---VQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEV  496 (562)
Q Consensus       426 ~~~~~~g~~~TGD~~~~~~~g------~---l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~  496 (562)
                      ...|.++||+|||+|+++++|      .   +++.||.||+||++|.+|+|.+||++|.++|+|.+++|++.+++..++.
T Consensus       293 ~~~~~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~  372 (436)
T 3qov_A          293 REMMPLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDE  372 (436)
T ss_dssp             CCSSCCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEE
T ss_pred             cCCceEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcE
Confidence            334568899999999999998      4   6999999999999999999999999999999999999999988888889


Q ss_pred             eEEEEEeCCCCCCC----HHHHHHHHhccCCCC-CCCcEEEeec---ccCCCCCcchHHHHh
Q 008535          497 PVAFVKLKEGREAS----PEELVTFCGDELPSC-MVPRAIFFED---IPVNSTGKVQKFVLR  550 (562)
Q Consensus       497 ~v~~v~~~~~~~~~----~~~l~~~~~~~l~~~-~~p~~i~~~~---lP~t~~GKv~r~~l~  550 (562)
                      ++++|++. +...+    .+++++++++.++.+ .+|..+.+++   ||+|+ ||++|...+
T Consensus       373 l~a~v~~~-~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~~~~  432 (436)
T 3qov_A          373 MIVEVELS-DLSTDNYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLPQSE-GKAVRVKDL  432 (436)
T ss_dssp             EEEEEEEC-TTCCCCHHHHHHHHHHHHHHHHHHHSSCCEEEEECTTCCC--------CEEEC
T ss_pred             EEEEEEEc-CccccchhhHHHHHHHHHHHHHHhcCCceEEEEeCCCcccCcC-CcceEEEec
Confidence            99999988 54444    578999999998888 8898887654   99999 999987543

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=100.00  E-value=3.8e-48  Score=394.59  Aligned_cols=332  Identities=16%  Similarity=0.180  Sum_probs=268.4

Q ss_pred             CCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHH---hhcCCCCCCeeeeeccc-ccchhhHHHHHhHhhceEEEEe
Q 008535          194 NHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQI---SRCDVRDMPVFLWTLDM-FRCNGWCCTWAMAAVGGINVCI  269 (562)
Q Consensus       194 ~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~---~~~~~~~~~~~l~~~pl-~~~~gl~~~~~~~~~g~~~v~~  269 (562)
                      ..++++++++|||||||.||+|.+||+++........   ..+++.++|+++..+|+ +|..++...+.++..|++++..
T Consensus        89 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~  168 (443)
T 2y4o_A           89 VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM  168 (443)
T ss_dssp             SCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred             CChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence            3567899999999999999999999999876654433   36788999999999998 5677777778888899999988


Q ss_pred             ccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccc--cccceEEEEEeCCCChHHHHHHHH-hcCCeeeccccCcc
Q 008535          270 RTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQN--QLQRKVIIVIAGVLPTIEVLEQVA-NFGFNIRHAYGMTE  346 (562)
Q Consensus       270 ~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~--~l~~l~~i~~~g~~l~~~~~~~~~-~~~~~l~~~YG~tE  346 (562)
                      +..++..+++.++++++|+++++|+++..|++.......  .++++|.+++||+++++++.+.++ .+|+++++.||+||
T Consensus       169 ~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE  248 (443)
T 2y4o_A          169 SGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSE  248 (443)
T ss_dssp             CSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETT
T ss_pred             CCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchh
Confidence            888999999999999999999999999999886543333  358999999999999999999998 56999999999999


Q ss_pred             ccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhhhhhhcCCchhhH
Q 008535          347 VLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATE  426 (562)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~  426 (562)
                      +++.++....... .            ...+.+.+.. .++|+|.+++++++.|  +.|||+|+|.            +.
T Consensus       249 ~~g~~~~~~~~~~-~------------~g~~~~~~~~-~~~i~d~~~g~~~~~G--~~Gel~v~~~------------t~  300 (443)
T 2y4o_A          249 VMGPGVACECVET-K------------DGPVIWEDHF-YPEIIDPVTGEVLPDG--SQGELVFTSL------------TK  300 (443)
T ss_dssp             TTEEEEEEECTTT-C------------CSEEECTTTE-EEEEECTTTCCBCCTT--CCEEEEEEES------------SC
T ss_pred             hcCCeEEeccCCC-C------------CceEEccCCe-EEEEEcCCCCCCCCCC--CceEEEEeCC------------Cc
Confidence            8543222211100 0            0111222333 7788887778888876  6799999983            22


Q ss_pred             hhhccceeeeCceeEEcCC-CcE-----EEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCCCCCceeEEE
Q 008535          427 EAFRNGWYHTGDLAVRNPD-GYV-----QMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAF  500 (562)
Q Consensus       427 ~~~~~g~~~TGD~~~~~~~-g~l-----~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~  500 (562)
                      ..|.++||+|||+|+++++ |.+     ++.||.||+||++|.+|+|.+||++|.++|+|.+++|++++++..++.++++
T Consensus       301 ~~~p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~  380 (443)
T 2y4o_A          301 EAMPVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLA  380 (443)
T ss_dssp             SSSCCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEE
T ss_pred             ccChhheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEE
Confidence            3456789999999999999 987     8999999999999999999999999999999999999988877677889999


Q ss_pred             EEeCC--C---CCCCHHHHHHHHhccCCCC-CCCcEEEee---cccCCCCCcchHHHHhhhh
Q 008535          501 VKLKE--G---REASPEELVTFCGDELPSC-MVPRAIFFE---DIPVNSTGKVQKFVLRGKV  553 (562)
Q Consensus       501 v~~~~--~---~~~~~~~l~~~~~~~l~~~-~~p~~i~~~---~lP~t~~GKv~r~~l~~~~  553 (562)
                      |++.+  +   ...+.++++++++++++.+ .+|..+.++   +||+|++||++|...++.+
T Consensus       381 v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~~~r~~  442 (443)
T 2y4o_A          381 VELRSEAAASVTDGERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVIDRRQA  442 (443)
T ss_dssp             EEECHHHHTTCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEEECCC-
T ss_pred             EEECCcccccchhhHHHHHHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEEeccCC
Confidence            99875  2   1234578999999999876 588887765   5999999999998665543

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=100.00  E-value=9.7e-48  Score=390.90  Aligned_cols=328  Identities=16%  Similarity=0.138  Sum_probs=267.3

Q ss_pred             CCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHH---hhcCCCCCCeeeeeccc-ccchhhHHHHHhHhhceEEEEe
Q 008535          194 NHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQI---SRCDVRDMPVFLWTLDM-FRCNGWCCTWAMAAVGGINVCI  269 (562)
Q Consensus       194 ~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~---~~~~~~~~~~~l~~~pl-~~~~gl~~~~~~~~~g~~~v~~  269 (562)
                      ..++++++++|||||||.||+|.+||+++........   ..+++.++|++++.+|+ +|..++...+.++..|++++..
T Consensus        87 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  166 (437)
T 2y27_A           87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPF  166 (437)
T ss_dssp             SCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECC
T ss_pred             CChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeC
Confidence            3567899999999999999999999999876654333   35788999999999998 6777777788888999999988


Q ss_pred             ccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhcccccccc--ccceEEEEEeCCCChHHHHHHHH-hcCCeeeccccCcc
Q 008535          270 RTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQ--LQRKVIIVIAGVLPTIEVLEQVA-NFGFNIRHAYGMTE  346 (562)
Q Consensus       270 ~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~--l~~l~~i~~~g~~l~~~~~~~~~-~~~~~l~~~YG~tE  346 (562)
                      +..++..+++.++++++|+++++|+++..|++.......+  ++++|.+++||+++++++.+.++ .+|+++++.||+||
T Consensus       167 ~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE  246 (437)
T 2y27_A          167 GGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSE  246 (437)
T ss_dssp             CSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETT
T ss_pred             CCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchh
Confidence            8889999999999999999999999999998865433332  57899999999999999999997 56999999999999


Q ss_pred             ccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhhhhhhcCCchhhH
Q 008535          347 VLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATE  426 (562)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~  426 (562)
                      +++.++....... .            ...+.+.+.. .++|+|.+++++++.|  +.|||+|+|.            +.
T Consensus       247 ~~g~~~~~~~~~~-~------------~g~~~~~~~~-~~~i~d~~~g~~~~~g--~~Gel~v~~~------------t~  298 (437)
T 2y27_A          247 VMGPGVASECVET-K------------DGPTIWEDHF-YPEIIDPETGEVLPDG--ELGELVFTSL------------TK  298 (437)
T ss_dssp             TTEEEEEECCTTT-C------------SSCEECTTTE-EEEEECTTTCCBCCTT--CCEEEEEEES------------SC
T ss_pred             hcCCeeEEecCCC-C------------CceeEccCce-EEEEEcCCCCCCCCCC--CccEEEEecC------------Cc
Confidence            8543222111100 0            0112222333 7788887778888866  6799999982            23


Q ss_pred             hhhccceeeeCceeEEcC-CCcE-----EEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCCCCCceeEEE
Q 008535          427 EAFRNGWYHTGDLAVRNP-DGYV-----QMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAF  500 (562)
Q Consensus       427 ~~~~~g~~~TGD~~~~~~-~g~l-----~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~  500 (562)
                      ..|.++||+|||+|++++ +|++     ++.||.||+||++|.+|+|.+||++|.++|+|.+++|++++++..++.++++
T Consensus       299 ~~~~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~  378 (437)
T 2y27_A          299 EALPIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLN  378 (437)
T ss_dssp             SSSCCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEE
T ss_pred             CCchhheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEE
Confidence            345678999999999998 6985     8999999999999999999999999999999999999988877778889999


Q ss_pred             EEeCCCCC---CCHHHHHHHHhccCCCC-CCCcEEEee---cccCCCCCcchHHHHh
Q 008535          501 VKLKEGRE---ASPEELVTFCGDELPSC-MVPRAIFFE---DIPVNSTGKVQKFVLR  550 (562)
Q Consensus       501 v~~~~~~~---~~~~~l~~~~~~~l~~~-~~p~~i~~~---~lP~t~~GKv~r~~l~  550 (562)
                      |++.++..   .+.++++++++++++.+ .+|..+.++   +||+|+ ||++|...+
T Consensus       379 v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~~~  434 (437)
T 2y27_A          379 VEPCPETAPDTAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVVDK  434 (437)
T ss_dssp             ECBCTTTTTCHHHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEEEC
T ss_pred             EEECCCccchhhhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEEec
Confidence            99876543   23478999999999887 588887765   599999 999997543

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=99.96  E-value=5.5e-29  Score=246.89  Aligned_cols=236  Identities=17%  Similarity=0.128  Sum_probs=177.3

Q ss_pred             CCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHH---hhcCCCCCCeeeeeccc-ccchhhHHHHHhHhhceEEEEe
Q 008535          194 NHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQI---SRCDVRDMPVFLWTLDM-FRCNGWCCTWAMAAVGGINVCI  269 (562)
Q Consensus       194 ~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~---~~~~~~~~~~~l~~~pl-~~~~gl~~~~~~~~~g~~~v~~  269 (562)
                      ..++++++|+|||||||.||+|.++|+++.....+..   ..+++.++|++++.+|+ +|..++...+.+...|+ .++.
T Consensus        88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~~  166 (369)
T 3hgu_A           88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFFS  166 (369)
T ss_dssp             SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEEC
T ss_pred             CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEEC
Confidence            3567899999999999999999999999888777443   45677899999999999 99999988888888888 6666


Q ss_pred             ccCCHH-----------------------HHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHH
Q 008535          270 RTVSAK-----------------------IIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIE  326 (562)
Q Consensus       270 ~~~~~~-----------------------~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~  326 (562)
                      ..++|.                       .+++.++++++|+++++|+++..|++........++++|.+++||++++++
T Consensus       167 ~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~  246 (369)
T 3hgu_A          167 IDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNLD  246 (369)
T ss_dssp             CCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCCHH
T ss_pred             ccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCCHH
Confidence            667777                       888899999999999999999999988655556788999999999999999


Q ss_pred             HHHHHH-hc--CCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCcc------ccccccceecccCCcccc
Q 008535          327 VLEQVA-NF--GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLN------NLLIQGVDVKQQNTMKSV  397 (562)
Q Consensus       327 ~~~~~~-~~--~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~------~~~~~~~~i~~~~~~~~~  397 (562)
                      ..+.++ +.  ++++++.||+||+++++..+..                 ..+|.+      .+.. .++|+|.++++++
T Consensus       247 ~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~-----------------~~~G~~~~~~~~~~~~-~v~ivD~~~g~~v  308 (369)
T 3hgu_A          247 EIKFIASEILPDCEFSASYGSTSALGVSRSLLI-----------------TSESQQVIYDSFSPFI-TYDVVDSITAQTV  308 (369)
T ss_dssp             HHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-----------------CTTCSSCEEECCTTTE-EEEEECTTTCSBC
T ss_pred             HHHHHHHHhCCCcEEEcccCchhhhcceecccc-----------------ccCCCcccccCCCCCe-EEEEECCCCCcCC
Confidence            999998 54  8999999999999866533210                 025555      5555 8888888788888


Q ss_pred             cCCCCceeEEEEcchhhhhhhcCCchhhHhhhccceeeeCceeEEcCC--C-------cEEEeccccceeecCCe
Q 008535          398 PHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPD--G-------YVQMKDRRKDIIISGAE  463 (562)
Q Consensus       398 ~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~--g-------~l~~~GR~~d~i~~~G~  463 (562)
                      +.|  +.|||+|++.....            + --+|+|||++...+.  |       .+..++|.++..++.|.
T Consensus       309 p~G--~~GEl~vt~l~~~~------------~-l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv  368 (369)
T 3hgu_A          309 EYG--ERGNVIVTHLSPWA------------F-YPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV  368 (369)
T ss_dssp             CTT--CEEEEEEEEEETTE------------E-EEEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred             CCC--CceEEEEEEcCccc------------c-cccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence            877  78999999843211            1 124999999988653  2       35567777777777664

>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}

Probab=99.56  E-value=2.4e-15  Score=119.69  Aligned_cols=101  Identities=17%  Similarity=0.177  Sum_probs=74.3

Q ss_pred             ccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCCCCCH---HHHHHHHhccCCCC-CC
Q 008535          452 DRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASP---EELVTFCGDELPSC-MV  527 (562)
Q Consensus       452 GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~~~---~~l~~~~~~~l~~~-~~  527 (562)
                      .|.||||+++|.+|+|.+||++|.++|+|.++++++.+++.+++.+.++|+..++.....   +++.+.+++.+..+ .+
T Consensus         1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~gv   80 (109)
T 3lax_A            1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILV   80 (109)
T ss_dssp             CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSS
T ss_pred             CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhCC
Confidence            489999999999999999999999999999999999999999999999999887755443   33444444444322 24


Q ss_pred             CcEEEee---cccCCCCCcchHHH-Hhhhh
Q 008535          528 PRAIFFE---DIPVNSTGKVQKFV-LRGKV  553 (562)
Q Consensus       528 p~~i~~~---~lP~t~~GKv~r~~-l~~~~  553 (562)
                      +..+.++   .|||| +||++|-. +|+.|
T Consensus        81 ~~~v~~v~~~~lPrt-sGKi~Rv~D~R~~~  109 (109)
T 3lax_A           81 TPRVKLVPKGALPKS-EGKAVRVKDLRKTF  109 (109)
T ss_dssp             CCEEEEECTTCSCCC----CCCEEECSCCC
T ss_pred             ccceEEEcCCeecCC-CCCcchhhhhccCC
Confidence            4455554   39998 79998842 45443

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=98.87  E-value=3e-08  Score=100.77  Aligned_cols=85  Identities=7%  Similarity=0.130  Sum_probs=58.4

Q ss_pred             CceeEEEEcchhhhhhhcCCchhhHhhhccceeeeCceeEEcC----CCcEEEeccccceeecCCeEechHHHHHHHhcC
Q 008535          402 KTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNP----DGYVQMKDRRKDIIISGAEIISSLEVEAVLLSN  477 (562)
Q Consensus       402 ~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~----~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~  477 (562)
                      |+.+||+|+...   |.|+             ||+||+.++..    .+++.|+||.++++.+.|++++..+||+++.+.
T Consensus       384 G~~YelViTt~~---GL~R-------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a  447 (581)
T 4eql_A          384 GCTYEPVVTNFA---GLYR-------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQA  447 (581)
T ss_dssp             TCEEEEEEECSS---SCCS-------------EECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC
T ss_pred             CceEEEEEeecc---ceee-------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHHH
Confidence            466999998753   4444             99999999975    467999999999999999999999999999854


Q ss_pred             C--------CceeEEEEeeeCCCCCceeEEEEEe
Q 008535          478 P--------KVLEAAVVGKVDDQLKEVPVAFVKL  503 (562)
Q Consensus       478 ~--------~v~~~~v~~~~~~~~~~~~v~~v~~  503 (562)
                      -        .|.|..+..... .....-+.++++
T Consensus       448 ~~~l~~~g~~l~eft~~~~~~-~~p~Hy~~~wel  480 (581)
T 4eql_A          448 KLVLESSGLDLKDFTSYADTS-TFPGHYVVYLEV  480 (581)
T ss_dssp             --------------CEEEECS-SSSBEEEEECC-
T ss_pred             HHhhhhcCCEEEEEEEecCCC-CCCCeEEEEEEE
Confidence            2        255666553322 222234445544

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=98.85  E-value=2.9e-08  Score=100.99  Aligned_cols=86  Identities=13%  Similarity=0.199  Sum_probs=62.9

Q ss_pred             CceeEEEEcchhhhhhhcCCchhhHhhhccceeeeCceeEEcC----CCcEEEeccccceeecCCeEechHHHHHHHhc-
Q 008535          402 KTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNP----DGYVQMKDRRKDIIISGAEIISSLEVEAVLLS-  476 (562)
Q Consensus       402 ~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~----~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~-  476 (562)
                      |+.+||+|+..   .|+|+             ||+||+.+++.    .+++.|+||.++++.+.|+++++.+||+++.+ 
T Consensus       396 G~~YelViTt~---~GL~R-------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~a  459 (609)
T 4b2g_A          396 GKEYELVITTY---AGLYR-------------YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNA  459 (609)
T ss_dssp             TCEEEEEEECT---TSCCS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHH
T ss_pred             CCeEEEehhhh---hhhhh-------------eecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHHH
Confidence            36699999865   35665             99999999973    47899999999999999999999999999873 


Q ss_pred             -----CC--CceeEEEEeeeCCCCCceeEEEEEeC
Q 008535          477 -----NP--KVLEAAVVGKVDDQLKEVPVAFVKLK  504 (562)
Q Consensus       477 -----~~--~v~~~~v~~~~~~~~~~~~v~~v~~~  504 (562)
                           ..  .|.+..+..... .....-+.++++.
T Consensus       460 ~~~l~~~g~~l~eft~~~d~~-~~p~Hyv~~wEl~  493 (609)
T 4b2g_A          460 SKLLREVNTSVVEYTSFADTK-TIPGHYVIYWELL  493 (609)
T ss_dssp             HHGGGGTTEEEEEEEEEEECS-SSSCEEEEEEEEE
T ss_pred             HHhhhccCCeEEEEEEecCCC-CCCCcEEEEEEEe
Confidence                 22  356776653322 2222445555553

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=98.72  E-value=3.2e-07  Score=92.92  Aligned_cols=86  Identities=15%  Similarity=0.123  Sum_probs=63.4

Q ss_pred             CceeEEEEcchhhhhhhcCCchhhHhhhccceeeeCceeEEcCC----CcEEEeccccceeecCCeEechHHHHHHHhcC
Q 008535          402 KTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPD----GYVQMKDRRKDIIISGAEIISSLEVEAVLLSN  477 (562)
Q Consensus       402 ~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~----g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~  477 (562)
                      |+.+||+|+...   |.|+             ||+||+.++..-    .++.|+||.++++.+.|+++++.+||+++.+.
T Consensus       391 G~~YelviTt~~---GL~R-------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~a  454 (581)
T 4epl_A          391 GEEYEVVITNYA---GLYR-------------YRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVESA  454 (581)
T ss_dssp             TCEEEEEEESTT---SCSS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHH
T ss_pred             CCeEEEEEeecc---ceee-------------EEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHHH
Confidence            366999998753   4444             999999999642    57999999999999999999999999988752


Q ss_pred             --------CCceeEEEEeeeCCCCCceeEEEEEeC
Q 008535          478 --------PKVLEAAVVGKVDDQLKEVPVAFVKLK  504 (562)
Q Consensus       478 --------~~v~~~~v~~~~~~~~~~~~v~~v~~~  504 (562)
                              -.|.|..+..... .....-+.++++.
T Consensus       455 ~~~l~~~~~~l~eft~~~d~~-~~p~hyv~~wE~~  488 (581)
T 4epl_A          455 AKRLSEEKIEVIDFSSYIDVS-TDPGHYAIFWEIS  488 (581)
T ss_dssp             HHHHHTTTCCEEEEEEEEECS-SSSCEEEEEEEES
T ss_pred             HHhhcccCCeEEEEEEecCCC-CCCCcEEEEEeec
Confidence                    2467777765322 2223445556664

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=93.08  E-value=0.88  Score=44.99  Aligned_cols=91  Identities=8%  Similarity=0.062  Sum_probs=75.7

Q ss_pred             eccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCc--HHHHHHHHHhhhccceEEecCCCCCHHHHHHHHhhCCceEEE
Q 008535           45 RFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNI--PALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIF  122 (562)
Q Consensus        45 ~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii  122 (562)
                      .+|.+.+...+..++..+...|+.++|++....+.+  ...+..+++++..|+..++.++ ...+.+...+++.++.+++
T Consensus       105 ~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~  183 (436)
T 3qov_A          105 VHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA-GNSKRQIKFISDFKTTALH  183 (436)
T ss_dssp             EEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHTCCEEE
T ss_pred             EECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHHCCCEEE
Confidence            489999999898888888889999999999998753  4556677888999999888764 4778899999999999999


Q ss_pred             EeccchHHHHHHHh
Q 008535          123 VDYQFVEVVQNALD  136 (562)
Q Consensus       123 ~~~~~~~~~~~~~~  136 (562)
                      ........+.....
T Consensus       184 ~~P~~~~~l~~~~~  197 (436)
T 3qov_A          184 AIPSYAIRLAEVFQ  197 (436)
T ss_dssp             CCHHHHHHHHHHHH
T ss_pred             ECHHHHHHHHHHHH
Confidence            98887777665543

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=92.95  E-value=1  Score=44.61  Aligned_cols=90  Identities=12%  Similarity=0.175  Sum_probs=74.2

Q ss_pred             eccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCc--HHHHHHHHHhhhccceEEecCCCCCHHHHHHHHhhCCceEEE
Q 008535           45 RFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNI--PALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIF  122 (562)
Q Consensus        45 ~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii  122 (562)
                      .+|.+.+...+..++..+...|++++|++....+.+  ...+...++++..|+.++++++ .+.+.+...+++.++.+++
T Consensus       109 ~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l~  187 (437)
T 2y27_A          109 GYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGG-GQTEKQVQLIQDFRPDIIM  187 (437)
T ss_dssp             EECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCS-CCHHHHHHHHHHHCCSEEE
T ss_pred             ecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHhCCCEEE
Confidence            489999998888888888889999999999998863  4445567888999999887765 4788999999999999999


Q ss_pred             EeccchHHHHHHH
Q 008535          123 VDYQFVEVVQNAL  135 (562)
Q Consensus       123 ~~~~~~~~~~~~~  135 (562)
                      ........+....
T Consensus       188 ~~Ps~~~~l~~~~  200 (437)
T 2y27_A          188 VTPSYMLSIADEI  200 (437)
T ss_dssp             ECHHHHHHHHHHH
T ss_pred             ECHHHHHHHHHHH
Confidence            9888777665543

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=92.75  E-value=1.1  Score=44.51  Aligned_cols=90  Identities=13%  Similarity=0.204  Sum_probs=74.2

Q ss_pred             eccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCc--HHHHHHHHHhhhccceEEecCCCCCHHHHHHHHhhCCceEEE
Q 008535           45 RFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNI--PALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIF  122 (562)
Q Consensus        45 ~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii  122 (562)
                      .+|.+.+...+..++..+...|+.++|++...++.+  ...+...++++..|+.++++++. +.+.+...+++.++.+++
T Consensus       111 ~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~l~  189 (443)
T 2y4o_A          111 GYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-QTEKQVQLIRDFEPKIIL  189 (443)
T ss_dssp             EECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHCCSEEE
T ss_pred             ecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-CHHHHHHHHHHhCCcEEE
Confidence            489999998888888888889999999999998863  44456678889999998887654 788999999999999999


Q ss_pred             EeccchHHHHHHH
Q 008535          123 VDYQFVEVVQNAL  135 (562)
Q Consensus       123 ~~~~~~~~~~~~~  135 (562)
                      ........+....
T Consensus       190 ~~Ps~~~~l~~~~  202 (443)
T 2y4o_A          190 VTPSYMLNLIDEM  202 (443)
T ss_dssp             ECHHHHHHHHHHH
T ss_pred             ECHHHHHHHHHHH
Confidence            9888776665543

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=80.48  E-value=14  Score=36.88  Aligned_cols=97  Identities=10%  Similarity=0.099  Sum_probs=72.5

Q ss_pred             cCCceEEEEC--C-------eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH-HHHHHHHhhhccceEEecCC
Q 008535           33 YGDATSIIYG--T-------VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPA-LYKLHFAVPMAGAVLSALNT  102 (562)
Q Consensus        33 ~p~~~a~~~~--~-------~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~v~l~~  102 (562)
                      .|+.+|++..  +       ..+|.+.+...+..+..   ..++.++|++...+|-.-. .+..+++++..|+..+..+ 
T Consensus       161 ~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-  236 (501)
T 3ipl_A          161 NLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD-  236 (501)
T ss_dssp             CTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-
T ss_pred             CCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC-
Confidence            4566766541  1       35899988877665543   3588999999999887532 3444678888999988775 


Q ss_pred             CCCHHHHHHHHhhCCceEEEEeccchHHHHH
Q 008535          103 RLDSATLASILRQLEAKIIFVDYQFVEVVQN  133 (562)
Q Consensus       103 ~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~  133 (562)
                      ..+++.+...+++.++.+++........+..
T Consensus       237 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~  267 (501)
T 3ipl_A          237 KFNAEQILTMIKNERITHISLVPQTLNWLMQ  267 (501)
T ss_dssp             SCCHHHHHHHHHHSCCCEEEECHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHcCCcEEEchHHHHHHHHh
Confidence            4789999999999999999998877666544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	562
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	1e-101
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	2e-99
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	3e-88
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	3e-85
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	4e-76
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	6e-76
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	9e-69

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  313 bits (802), Expect = e-101
 Identities = 152/544 (27%), Positives = 232/544 (42%), Gaps = 37/544 (6%)

Query: 17  NVPLTPIDFLERAAHVYGDATSIIYG----TVRFSWRQTHQICLKLASALAQLKISRGDI 72
           +  L   DFLERAA ++G    +         R ++ + +Q   +L   L  L +  GD 
Sbjct: 8   DEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDR 67

Query: 73  VAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQ 132
           VA +  N     + +FAVP  GAVL   N RL    +A IL   E K++  D   + +V+
Sbjct: 68  VATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVE 127

Query: 133 NALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQ 192
                L                   + +                                
Sbjct: 128 AIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEAD-----------------------PV 164

Query: 193 PNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLA--QISRCDVRDMPVFLWTLDMFRC 250
              E     + YT+G+TG PKGVVYSHR   L+SLA   +    + +  V L  + MF  
Sbjct: 165 RVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHV 224

Query: 251 NGWCCTWAMAAVGGINVCI-RTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQ 309
           N WC  +A   VG   V     +    + +      VT   G P +   +A+   S  ++
Sbjct: 225 NAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHR 284

Query: 310 LQRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEH 369
           L+    +V+ G      ++ +    G  +R  YG+TE     +    K   ES + + + 
Sbjct: 285 LKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKL 344

Query: 370 EMTKHREGLNNLLIQGVDVKQQN-TMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEA 428
                 +    L I  V ++  +   + VP DGK LGEV  +   +  GY+ N +AT  A
Sbjct: 345 T----LKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSA 400

Query: 429 FR-NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVG 487
              +G++ TGD+AV + +GYV++KDR KD+I SG E ISS+++E  L+ +PKV EAAVV 
Sbjct: 401 LTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVA 460

Query: 488 KVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFF-EDIPVNSTGKVQK 546
               + +E P+A V  +  +    E              +P A  F E+IP  S GK  K
Sbjct: 461 IPHPKWQERPLAVVVPRGEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLK 520

Query: 547 FVLR 550
             LR
Sbjct: 521 RALR 524

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  313 bits (802), Expect = 2e-99
 Identities = 113/554 (20%), Positives = 206/554 (37%), Gaps = 48/554 (8%)

Query: 26  LERAAHVYGDATSIIY------GTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPN 79
           L+R     GD T+II+       +   S+R+ H+   + A+ L  L I +GD+VA   P 
Sbjct: 78  LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 137

Query: 80  IPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILS 139
           +P       A    GAV S +        +A  +    ++++    + V     A   + 
Sbjct: 138 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVR----AGRSIP 193

Query: 140 PNHKCDKAPLLVTIPECDH--YQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHEC 197
                D A     +   +H      T S  +      L + DL+E    + +    N E 
Sbjct: 194 LKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAE- 252

Query: 198 DPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISR-CDVRDMPVFLWTLDMFRCNGWCCT 256
           DP+ + YTSGSTG PKGV+++  G  + +        D     ++  T D+    G    
Sbjct: 253 DPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYL 312

Query: 257 WAMAAVGGINVCI-----RTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQ 311
                  G    +        +   +   +  H+V  L   P  +  +            
Sbjct: 313 LYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTD 372

Query: 312 R---KVIIVIAGVLPT---IEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSAL 365
           R   +++  +   +         +++      +   +  TE  G  I             
Sbjct: 373 RSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMIT------------ 420

Query: 366 DHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRAN--TVMLGYFKNPK 423
                  + + G       GV     +  +  P +G T G ++   +        F + +
Sbjct: 421 -PLPGAIELKAGSATRPFFGVQPALVDN-EGHPQEGATEGNLVITDSWPGQARTLFGDHE 478

Query: 424 ATEEAF---RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKV 480
             E+ +       Y +GD A R+ DGY  +  R  D++      + + E+E+ L+++PK+
Sbjct: 479 RFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKI 538

Query: 481 LEAAVVGKVDDQLKEVPVAFVKLKEGREASPE---ELVTFCGDELPSCMVPRAIFF-EDI 536
            EAAVVG       +   A+V L  G E SPE   E+  +   E+     P  + + + +
Sbjct: 539 AEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSL 598

Query: 537 PVNSTGKVQKFVLR 550
           P   +GK+ + +LR
Sbjct: 599 PKTRSGKIMRRILR 612

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  283 bits (725), Expect = 3e-88
 Identities = 113/560 (20%), Positives = 199/560 (35%), Gaps = 46/560 (8%)

Query: 24  DFLERAAHVYGDATSIIY------GTVRFSWRQTHQICLKLASALA-QLKISRGDIVAAM 76
           + ++R A    +  +II+           ++++  +   ++A  L   + + +GD VA  
Sbjct: 63  NCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVY 122

Query: 77  APNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALD 136
            P +P       A+   GA+ S +     S +L   +   ++K++    +          
Sbjct: 123 MPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNR----GGK 178

Query: 137 ILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHE 196
           ++      D A               T + +  F +         +     +    P   
Sbjct: 179 VIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDS 238

Query: 197 CDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQIS-RCDVRDMPVFLWTLDMFRCNGWCC 255
            DP+ + YTSGSTG PKGV +S  G  L +L  +    D     VF    D+    G   
Sbjct: 239 EDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTY 298

Query: 256 TWAMAAVGGINVCI-----RTVSAKIIFDSILIHKVTHLCGQPRILNMIANASAS--DQN 308
                 + G    +        +    +D I  HKVT     P  L ++  A  S  + +
Sbjct: 299 VVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENH 358

Query: 309 QLQRKVIIVIAGVLPTIEVLEQVAN-FGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDH 367
            L+    +   G     EV E  +   G N                      G       
Sbjct: 359 SLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGG------ 412

Query: 368 EHEMTKHREGLNNLLIQGVDVK---QQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKA 424
              +T  + G  +    G+D          +      + +  V     +     +KN   
Sbjct: 413 ---VTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDR 469

Query: 425 TEEAFRN---GWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVL 481
             + + N   G+Y TGD A ++ DGY+ +  R  D++      +S+ E+EA ++ +P V 
Sbjct: 470 YLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVA 529

Query: 482 EAAVVGKVDDQLKEVPVAFVKLKEGREASP----------EELVTFCGDELPSCMVPRAI 531
           E AVVG  DD   +   AFV LK     S           + LV     ++     P+ I
Sbjct: 530 ECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLI 589

Query: 532 FF-EDIPVNSTGKVQKFVLR 550
              +D+P   +GK+ + +LR
Sbjct: 590 ILVDDLPKTRSGKIMRRILR 609

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  272 bits (697), Expect = 3e-85
 Identities = 113/559 (20%), Positives = 220/559 (39%), Gaps = 47/559 (8%)

Query: 10  LCSASANNVPL---TPIDFLERAAHVYGDATSII-----YGTVRFSWRQTHQICLKLASA 61
           +    A   PL   T  + L +A   Y      I     +  V  ++ +  ++ ++LA A
Sbjct: 4   IKKGPAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEA 63

Query: 62  LAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKII 121
           + +  ++    +   + N    +         G  ++  N   +   L + +   +  ++
Sbjct: 64  MKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVV 123

Query: 122 FVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLL 181
           FV  + ++ + N    L    K     ++ +  +   +Q     V ++ P G  +Y    
Sbjct: 124 FVSKKGLQKILNVQKKLPIIQKI---IIMDSKTDYQGFQSMYTFVTSHLPPGFNEY---- 176

Query: 182 EMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLN---SLAQISRCDVRDM 238
                DF     + +     +  +SGSTG PKGV   HR A +    +   I    +   
Sbjct: 177 -----DFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPD 231

Query: 239 PVFLWTLDMFRCNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNM 298
              L  +      G   T      G   V +     ++   S+  +K+      P + + 
Sbjct: 232 TAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSF 291

Query: 299 IANASASDQNQLQRKVIIVIAGVLPTIEVLEQVA--NFGFNIRHAYGMTEVLGPAIVRQW 356
            A ++  D+  L     I   G   + EV E VA       IR  YG+TE     ++   
Sbjct: 292 FAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPE 351

Query: 357 KPEGESSALDHEHEMTKHREGLNNLLIQGVDVK--QQNTMKSVPHDGKTLGEVMFRANTV 414
             +   +                  ++   + K    +T K++  + +  GE+  R   +
Sbjct: 352 GDDKPGAV---------------GKVVPFFEAKVVDLDTGKTLGVNQR--GELCVRGPMI 394

Query: 415 MLGYFKNPKATEEAF-RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAV 473
           M GY  NP+AT     ++GW H+GD+A  + D +  + DR K +I      ++  E+E++
Sbjct: 395 MSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESI 454

Query: 474 LLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPS-CMVPRAIF 532
           LL +P + +A V G  DD   E+P A V L+ G+  + +E+V +   ++ +   +   + 
Sbjct: 455 LLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVV 514

Query: 533 F-EDIPVNSTGKVQKFVLR 550
           F +++P   TGK+    +R
Sbjct: 515 FVDEVPKGLTGKLDARKIR 533

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score =  247 bits (632), Expect = 4e-76
 Identities = 94/535 (17%), Positives = 176/535 (32%), Gaps = 61/535 (11%)

Query: 24  DFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPAL 83
              E       +  +I+    + ++ + +    +LA    +  I +  +V  M      L
Sbjct: 27  QLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDL 86

Query: 84  YKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHK 143
           +    AV  AG     ++       +  IL   +A+++      V ++ N          
Sbjct: 87  FIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNI--------- 137

Query: 144 CDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVN 203
             +    V I E D  +                        +    +  P+   D   V 
Sbjct: 138 --QFNGQVEIFEEDTIK-----------------------IREGTNLHVPSKSTDLAYVI 172

Query: 204 YTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAMAAVG 263
           YTSG+TG+PKG +  H+G     +   +  +V +         +         +     G
Sbjct: 173 YTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTG 232

Query: 264 GINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLP 323
                I       I D +   +  +      I          D  ++     ++ AG   
Sbjct: 233 ASLYIIL---KDTINDFVKFEQYINQKEITVITLPPTYVVHLDPERILSIQTLITAGSAT 289

Query: 324 TIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLI 383
           +  ++ +         +AYG TE         W             + T          I
Sbjct: 290 SPSLVNKWKE-KVTYINAYGPTE--TTICATTWVAT----------KETIGHSVPIGAPI 336

Query: 384 QGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRN-------GWYHT 436
           Q   +   +    +   G+  GE+      +  GY+K P+ T + F +         Y T
Sbjct: 337 QNTQIYIVDENLQLKSVGEA-GELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKT 395

Query: 437 GDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEV 496
           GD A    DG ++   R  + +      +   EVE++LL +  + E AV    D Q +  
Sbjct: 396 GDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPY 455

Query: 497 PVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFF-EDIPVNSTGKVQKFVLR 550
             A+   ++      E+L  F  +ELP+ M+P      + +P+ S GK+ +  L 
Sbjct: 456 LCAYFVSEKH--IPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLP 508

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score =  247 bits (630), Expect = 6e-76
 Identities = 124/544 (22%), Positives = 204/544 (37%), Gaps = 53/544 (9%)

Query: 21  TPIDFLERAAHVYGDATSIIYG--TVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAP 78
           T  + L RAA    D  ++      +R +  +       +A+ L    +     VA +AP
Sbjct: 3   TVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAP 62

Query: 79  NIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDIL 138
           N   +     A+   GAV + LN RL SA LA ++++ E     +       V +A+   
Sbjct: 63  NSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVG--RQVADAIFQS 120

Query: 139 SPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECD 198
               +      LV   E   Y P                                     
Sbjct: 121 GSGARIIFLGDLVRDGEPYSYGPPIEDPQR--------------------------EPAQ 154

Query: 199 PISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISR--CDVRDMPVFLWTLDMFRCNGWCCT 256
           P  + YTSG+TG PK  +   R A    L   ++         V L  + ++   G+   
Sbjct: 155 PAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAV 214

Query: 257 WAMAAVG-GINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQR--- 312
              A    G  V +           +   +VT L   P  L+ +A A+A   + L+    
Sbjct: 215 LVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSL 274

Query: 313 KVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMT 372
           + +      +P   +     +      + YG TE +    +RQ K               
Sbjct: 275 RHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKT-------------- 320

Query: 373 KHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNG 432
              E       +   V+    +  +  +G+    ++  +++  +GY   P+AT E  ++G
Sbjct: 321 -GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDG 379

Query: 433 WYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQ 492
           WY T D+AV  P+G V++  R  D+IISG E I   E+E VL + P V E  V+G  D +
Sbjct: 380 WYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQR 439

Query: 493 LKEVPVAFVKLKEGREASPEELVTFC-GDELPSCMVPRAIFF-EDIPVNSTGKVQKFVLR 550
             +   A V  + G   S + L TFC   EL     P+  F  + +P N+  KV +  L 
Sbjct: 440 WGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLV 499

Query: 551 GKVN 554
            +V+
Sbjct: 500 QQVS 503

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score =  229 bits (583), Expect = 9e-69
 Identities = 109/532 (20%), Positives = 189/532 (35%), Gaps = 39/532 (7%)

Query: 24  DFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPAL 83
           D L   A  YGD  +I  G   +S+R+      +LA+   +L I + D V    PNI   
Sbjct: 29  DLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEF 88

Query: 84  YKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHK 143
           +++ FA+   GA+         S+ +       EA    +   +      +L        
Sbjct: 89  FEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSL-------- 140

Query: 144 CDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVN 203
                           Q    ++ N   +G  +    LE    +   +      D   + 
Sbjct: 141 ------------ARQVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQ 188

Query: 204 YTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTW--AMAA 261
            + GSTG  K +  +H     +    +  C +    V+L  L M             +  
Sbjct: 189 LSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLY 248

Query: 262 VGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGV 321
            GG  V   + S    F  I   KVT     P +  +  +A++S ++ L    ++ + G 
Sbjct: 249 AGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGA 308

Query: 322 LPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNL 381
             + E   +             +  V G  + + +             +  +        
Sbjct: 309 KFSAEAARR-------------VKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGK 355

Query: 382 LIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEA-FRNGWYHTGDLA 440
            +   D  +              G ++ R    + GY+K  +    +   +G+Y TGD+ 
Sbjct: 356 PMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIV 415

Query: 441 VRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAF 500
               DGY+ ++ R KD I  G E +++ EVE  LL++P V +AA+V   D  L E    F
Sbjct: 416 RLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVF 475

Query: 501 VKLKEGREASPEELVTFCGD-ELPSCMVPRAIFF-EDIPVNSTGKVQKFVLR 550
           +  ++       EL  F  +  L +  +P  + F E  P    GKV K  LR
Sbjct: 476 IIPRDE-APKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALR 526

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	562
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	100.0
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	100.0
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	82.35

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=9.2e-76  Score=620.37  Aligned_cols=514  Identities=21%  Similarity=0.274  Sum_probs=414.5

Q ss_pred             CCCChH-HHHHHHHHHcCCceEEEECC------eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHh
Q 008535           18 VPLTPI-DFLERAAHVYGDATSIIYGT------VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAV   90 (562)
Q Consensus        18 ~~~ti~-~~l~~~a~~~p~~~a~~~~~------~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~   90 (562)
                      ...|+. .+|+++++.+||++|+++.+      +++||+||.+++.++|+.|.++|+++||+|+++++|++++++++|||
T Consensus        69 ~~~N~~~n~ldrh~~~~~d~~Ali~~~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA~  148 (643)
T d1pg4a_          69 GTLNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLAC  148 (643)
T ss_dssp             CEECHHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred             ChhhHHHHHHHHHHHhCCCCEEEEEEecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHHH
Confidence            445665 46678889999999998532      57999999999999999999999999999999999999999999999


Q ss_pred             hhccceEEecCCCCCHHHHHHHHhhCCceEEEEeccc---------hHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCC
Q 008535           91 PMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQF---------VEVVQNALDILSPNHKCDKAPLLVTIPECDHYQP  161 (562)
Q Consensus        91 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (562)
                      +++|++++|+++.++.+++.+++++++++++|+++..         ..............    ....++.+......  
T Consensus       149 ~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~i~~~~~~~~--  222 (643)
T d1pg4a_         149 ARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVT----SVEHVIVLKRTGSD--  222 (643)
T ss_dssp             HHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCC----SCCEEEEECSSCCC--
T ss_pred             HHhCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccc----cceEEEEeccCCcc--
Confidence            9999999999999999999999999999999997653         22222222211110    12334433322211  


Q ss_pred             CcccccCCCCCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHH-HHHhhcCCCCCCe
Q 008535          162 STCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSL-AQISRCDVRDMPV  240 (562)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~-~~~~~~~~~~~~~  240 (562)
                           ................... ........+++|+++|+|||||||.||||+++|++++.... .....+++.++|+
T Consensus       223 -----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~  296 (643)
T d1pg4a_         223 -----IDWQEGRDLWWRDLIEKAS-PEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDI  296 (643)
T ss_dssp             -----CCCCBTTEEEHHHHHTTSC-SCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCE
T ss_pred             -----cccccccchhhhhhhcccC-cccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCCCCCE
Confidence                 0000111122222222222 22222335678999999999999999999999999765544 4455678999999


Q ss_pred             eeeecccccchhhHH-HHHhHhhceEEEEecc----CCHHHHHHHHHhcCeEEEEcchHHHHHHHhcccc--ccccccce
Q 008535          241 FLWTLDMFRCNGWCC-TWAMAAVGGINVCIRT----VSAKIIFDSILIHKVTHLCGQPRILNMIANASAS--DQNQLQRK  313 (562)
Q Consensus       241 ~l~~~pl~~~~gl~~-~~~~~~~g~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~l~~l  313 (562)
                      +++..|++|++++.. ++.+++.|+++++.+.    +++..+++.++++++|+++++|.+++.|++....  ...+++++
T Consensus       297 ~~~~~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~dl~sL  376 (643)
T d1pg4a_         297 YWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSL  376 (643)
T ss_dssp             EEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTC
T ss_pred             EEEeCChHHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhccccCCCce
Confidence            999999999999875 5677889999998753    5899999999999999999999999999887543  35578999


Q ss_pred             EEEEEeCCCChHHHHHHHH-hc---CCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceec
Q 008535          314 VIIVIAGVLPTIEVLEQVA-NF---GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVK  389 (562)
Q Consensus       314 ~~i~~~g~~l~~~~~~~~~-~~---~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~  389 (562)
                      |.++++|++++++..+++. .+   ++++++.||+||+++.++....          .........+|.|.++. .++++
T Consensus       377 r~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~TE~g~~~~~~~~----------~~~~~~~gs~G~p~~g~-~v~iv  445 (643)
T d1pg4a_         377 RILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLP----------GAIELKAGSATRPFFGV-QPALV  445 (643)
T ss_dssp             CEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCT----------TTCCBCTTCCBSBCTTC-CEEEE
T ss_pred             EEEEEEeCCCCHHHHHHHHHHhCCCCceEEEeechhhccceEEecCC----------CccCCCCCccccccCCC-EEEEE
Confidence            9999999999999999987 44   4779999999999876664321          11122345677888777 78888


Q ss_pred             ccCCcccccCCCCceeEEEEcc--hhhhhhhcCCchhhHhhh---ccceeeeCceeEEcCCCcEEEeccccceeecCCeE
Q 008535          390 QQNTMKSVPHDGKTLGEVMFRA--NTVMLGYFKNPKATEEAF---RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEI  464 (562)
Q Consensus       390 ~~~~~~~~~~~~~~~Gel~v~~--~~~~~gy~~~~~~~~~~~---~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~  464 (562)
                      |. ++++++.+  +.|||+|+|  |+++.||+++++.+.+.+   .+|||+|||+|++|+||.+++.||+||+||++|.+
T Consensus       446 d~-~g~~~~~g--~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~ik~~G~r  522 (643)
T d1pg4a_         446 DN-EGHPQEGA--TEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHR  522 (643)
T ss_dssp             CT-TCCBCCSS--EEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEE
T ss_pred             CC-CCCCCCCC--ceEEEEEecCCCcccccccCChhhchhhhcccCCCeEEcCCEEEECCCceEEEecccccEEEECCEE
Confidence            86 57777665  789999999  468899999998887765   48999999999999999999999999999999999


Q ss_pred             echHHHHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCCCCCH---HHHHHHHhccCCCCCCCcEEEeec-ccCCC
Q 008535          465 ISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASP---EELVTFCGDELPSCMVPRAIFFED-IPVNS  540 (562)
Q Consensus       465 v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~~~---~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~  540 (562)
                      |+|.+||++|.+||.|.+|+|++.+++..|+.++++|+++++...+.   ++|+++++++|++|++|+.|++++ ||+|+
T Consensus       523 i~p~eIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vv~~~~~~~~~~~~~~i~~~~~~~L~~~~vP~~i~~v~~lP~T~  602 (643)
T d1pg4a_         523 LGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTR  602 (643)
T ss_dssp             EEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCT
T ss_pred             ECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCcccCccEEEEECCCCCCC
Confidence            99999999999999999999999999999999999999998876664   489999999999999999988765 99999


Q ss_pred             CCcchHHHHhhhhhhhc
Q 008535          541 TGKVQKFVLRGKVNATA  557 (562)
Q Consensus       541 ~GKv~r~~l~~~~~~~~  557 (562)
                      +||++|++||+++.++.
T Consensus       603 sGKi~R~~Lr~~~~~~~  619 (643)
T d1pg4a_         603 SGKIMRRILRKIAAGDT  619 (643)
T ss_dssp             TSCBCHHHHHHHHHTC-
T ss_pred             CcCccHHHHHHHhcCCc
Confidence            99999999999987743

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.1e-75  Score=611.93  Aligned_cols=514  Identities=30%  Similarity=0.424  Sum_probs=395.9

Q ss_pred             CCCCChHHHHHHHHHHcCCceEEEECC----eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhh
Q 008535           17 NVPLTPIDFLERAAHVYGDATSIIYGT----VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPM   92 (562)
Q Consensus        17 ~~~~ti~~~l~~~a~~~p~~~a~~~~~----~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~   92 (562)
                      ....||.++|+++++++|+++|+++..    +++||+||++++.++|++|.+.|+++||+|+++++|++++++++|||++
T Consensus         8 ~~~~~l~~~l~~~a~~~pd~~av~~~~~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~   87 (534)
T d1v25a_           8 DEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPG   87 (534)
T ss_dssp             CCCCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHcCCCeEEEEecCCceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence            356699999999999999999999843    4699999999999999999999999999999999999999999999999


Q ss_pred             ccceEEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCC
Q 008535           93 AGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPS  172 (562)
Q Consensus        93 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (562)
                      +|++++|++|.++.+++.++++.+++++++++................      ....+...+....             
T Consensus        88 ~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-------------  148 (534)
T d1v25a_          88 MGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKT------VQHFVVMDEKAPE-------------  148 (534)
T ss_dssp             TTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSS------CCEEEESSSCCCT-------------
T ss_pred             hCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhhcccc------cceeEEeeccccc-------------
Confidence            999999999999999999999999999999999888877766554332      2222222221110             


Q ss_pred             CCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHH--HHhhcCCCCCCeeeeecccccc
Q 008535          173 GSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLA--QISRCDVRDMPVFLWTLDMFRC  250 (562)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~--~~~~~~~~~~~~~l~~~pl~~~  250 (562)
                       ......   .............++++++++|||||||.||||+++|.++......  ....+.....+++++.+|++|.
T Consensus       149 -~~~~~~---~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~  224 (534)
T d1v25a_         149 -GYLAYE---EALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHV  224 (534)
T ss_dssp             -TCEEHH---HHCCSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSH
T ss_pred             -cccccc---ccccccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhcccccccccccccccchhhh
Confidence             000000   0011111122345779999999999999999999999998765543  3344567889999999999999


Q ss_pred             hhhHHHHHhHhhceEEEEec-cCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHH
Q 008535          251 NGWCCTWAMAAVGGINVCIR-TVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLE  329 (562)
Q Consensus       251 ~gl~~~~~~~~~g~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~  329 (562)
                      +++...+..+..|++.++.. .+++..+...+.++++|++.++|.++..++.........++++|.+++||++++++..+
T Consensus       225 ~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~  304 (534)
T d1v25a_         225 NAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIA  304 (534)
T ss_dssp             HHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHH
T ss_pred             ccccccceeeeecceeeeccccccccccchhhhhccccccccCchhhhhhhhhhccccccccceeEEEEecCCCCHHHHH
Confidence            99999888888888888775 58999999999999999999999999999998877778899999999999999999999


Q ss_pred             HHHhcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEE
Q 008535          330 QVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMF  409 (562)
Q Consensus       330 ~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v  409 (562)
                      .+++++.++++.||+||++.++............. ..........+|.|.++. .++|++. +++.++.+.++.|||+|
T Consensus       305 ~~~~~~~~i~~~yG~te~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~G~p~~g~-~~~i~d~-~~~~~~~~~~~~Gel~v  381 (534)
T d1v25a_         305 RFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLS-EEEKLTLKAKTGLPIPLV-RLRVADE-EGRPVPKDGKALGEVQL  381 (534)
T ss_dssp             HHHHTTCEEEEEEECGGGSSEEEECCCCGGGTTSC-HHHHHHHHTSCBEECTTC-EEEEECT-TSCBCCSSSCCCEEEEE
T ss_pred             HHHHhCCeeeeeccccccccceeecccCccccccC-ccccccccccceeccCCc-EEEEECC-CCCCCCCCCCeeEEEEE
Confidence            99999999999999999998877653322111110 112223345778888887 8888886 67888887778999999


Q ss_pred             cchhhhhhhcCCchhhHhhh-ccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEee
Q 008535          410 RANTVMLGYFKNPKATEEAF-RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGK  488 (562)
Q Consensus       410 ~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~  488 (562)
                      +|++++.||+++++.+...| .+|||+|||+|++|+||.+++.||.+|+||++|++|+|.+||++|.++|+|.+++|+++
T Consensus       382 ~g~~v~~gY~~~~~~t~~~~~~dg~~~TGDlg~~~~~G~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~V~~a~v~~~  461 (534)
T d1v25a_         382 KGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAI  461 (534)
T ss_dssp             ESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEE
T ss_pred             cCCcccceecCChhhhhhhcccCCCCccCceeEECCCccEEEecccccEEEECCEEECHHHHHHHHHhCCCcceEEEEEE
Confidence            99999999999999998887 58999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhh
Q 008535          489 VDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNAT  556 (562)
Q Consensus       489 ~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~  556 (562)
                      +++..++.++++|+++.......+.++..+++.+++|++|+.|.+++ ||+|++|||+|++||++|.+.
T Consensus       462 ~~~~~~~~l~a~vv~~~~~~~~~~~~~~~~~~~l~~~~~P~~i~~~~~lP~t~~GKi~R~~lr~~~~~~  530 (534)
T d1v25a_         462 PHPKWQERPLAVVVPRGEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNY  530 (534)
T ss_dssp             ECSSSSEEEEECC-------------------CCCTTTSCSBC--------------CCTTHHHHSTTS
T ss_pred             ECCCCCeEEEEEEEeCCCCCCHHHHHHHHHHhcCCcCCCccEEEEECCCCCCCCccccHHHHHHHHHhh
Confidence            99999999999998876544333344445788899999999887655 999999999999999999763

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=1.3e-73  Score=597.54  Aligned_cols=507  Identities=21%  Similarity=0.302  Sum_probs=417.3

Q ss_pred             CCCChHHHHHHHHHHc---CCceEEEECC--eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhh
Q 008535           18 VPLTPIDFLERAAHVY---GDATSIIYGT--VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPM   92 (562)
Q Consensus        18 ~~~ti~~~l~~~a~~~---p~~~a~~~~~--~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~   92 (562)
                      +..|+.++|.++++++   |+.+|+++.+  +++||+||++++.++|+.|+++|+++||+|+++++|++++++++|||++
T Consensus        15 ~~~t~~~~l~~~~~~~~~~P~~~a~~d~~~~~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~~v~~lA~~~   94 (541)
T d1lcia_          15 EDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALF   94 (541)
T ss_dssp             CSSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSSTHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhhCCCCCeEEEEeCCCCeEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence            4478999999999988   8888998754  6899999999999999999999999999999999999999999999999


Q ss_pred             ccceEEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCC
Q 008535           93 AGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPS  172 (562)
Q Consensus        93 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (562)
                      +|++++|+++.++.+++.++++.++++++|++++..+.+.+....++.      ...++.++.....            .
T Consensus        95 ~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~------------~  156 (541)
T d1lcia_          95 IGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPI------IQKIIIMDSKTDY------------Q  156 (541)
T ss_dssp             HTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTT------CCEEEETTCSSCB------------T
T ss_pred             hCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhccccccc------cceeeeecCCccc------------c
Confidence            999999999999999999999999999999999988888777665543      2334443322211            1


Q ss_pred             CCCchhhhhhcc------cCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhh---cCCCCCCeeee
Q 008535          173 GSLDYNDLLEMG------KADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISR---CDVRDMPVFLW  243 (562)
Q Consensus       173 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~---~~~~~~~~~l~  243 (562)
                      +...+.......      ..+........++++++++|||||||.||+|++||+++..........   ....+.++++.
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~  236 (541)
T d1lcia_         157 GFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILS  236 (541)
T ss_dssp             TBEEHHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEE
T ss_pred             ccchhhhhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhcccccccccccccc
Confidence            112222222111      111122223456789999999999999999999999988766655543   35778999999


Q ss_pred             ecccccchhhHHHHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCC
Q 008535          244 TLDMFRCNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLP  323 (562)
Q Consensus       244 ~~pl~~~~gl~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l  323 (562)
                      .+|++|..++...+.....++..+.....+.......+.+++++.++.+|..+..++.........+++++.+++||+++
T Consensus       237 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~v~~gG~~~  316 (541)
T d1lcia_         237 VVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPL  316 (541)
T ss_dssp             CSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGGGSCCTTCCEEECTTCCC
T ss_pred             cccccccccccccccccccccccccccccccchhHHHHhhhhccccccCccccccccccccccccccccceEEEeccccc
Confidence            99999999999999999999999988889999999999999999999999999999998888888899999999999999


Q ss_pred             hHHHHHHHH-hcC-CeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCC
Q 008535          324 TIEVLEQVA-NFG-FNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDG  401 (562)
Q Consensus       324 ~~~~~~~~~-~~~-~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~  401 (562)
                      +++..+.+. .++ ..+++.||+||+++.++.....            ......+|.|.+++ .++|++.+++.+++.| 
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~------------~~~~~svG~p~~~~-~~~i~d~d~~~~~~~g-  382 (541)
T d1lcia_         317 SKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEG------------DDKPGAVGKVVPFF-EAKVVDLDTGKTLGVN-  382 (541)
T ss_dssp             CHHHHHHHHHHTTCSCCBCEECCGGGSSCSEECCCC---------------CCCCBEECTTC-EEEEECTTTCCBCCTT-
T ss_pred             ccccccccccccCCceeeecCCccccCceEEecCcc------------cCCCCccccccCCC-EEEEEECCCCcCCCCC-
Confidence            999999887 455 4689999999998887764322            12234678888887 8889998888888877 


Q ss_pred             CceeEEEEcchhhhhhhcCCchhhHhhhc-cceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCc
Q 008535          402 KTLGEVMFRANTVMLGYFKNPKATEEAFR-NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKV  480 (562)
Q Consensus       402 ~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v  480 (562)
                       +.|||+|+|++++.||+++++.+...+. +|||+|||+|++|++|.+++.||.+|+||++|++|+|.+||++|.++|+|
T Consensus       383 -~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~p~V  461 (541)
T d1lcia_         383 -QRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNI  461 (541)
T ss_dssp             -CCEEEEEESTTSCSEETTBHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-----CEEETTEEECHHHHHHHHHTSTTE
T ss_pred             -CeEEEEEccCccCCeeCCChhhhhhcccCCccccCCCeeEEcCCeEEEEeeeecCEEEECCEEECHHHHHHHHHhCCCc
Confidence             6799999999999999999888877764 78999999999999999999999999999999999999999999999999


Q ss_pred             eeEEEEeeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCC-CCcEEEeec-ccCCCCCcchHHHHhhhhhhhc
Q 008535          481 LEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCM-VPRAIFFED-IPVNSTGKVQKFVLRGKVNATA  557 (562)
Q Consensus       481 ~~~~v~~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~-~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~~  557 (562)
                      .+|+|++++++..++.++++|+++++...+.++++++++++++++. +|+.+++++ ||+|++||++|++|++++.++.
T Consensus       462 ~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~~~~~p~~i~~v~~lP~t~~GKi~r~~l~~~~~~~~  540 (541)
T d1lcia_         462 FDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAK  540 (541)
T ss_dssp             EEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHSCGGGSCTTEEEEESSCCC-----CCHHHHHHHHHHHT
T ss_pred             cEEEEEEEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHhCCccccCCcEEEEeCCCCcCCCcCccHHHHHHHHHHhC
Confidence            9999999999999999999999998888899999999999998775 788887655 9999999999999999998764

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.9e-73  Score=603.95  Aligned_cols=514  Identities=23%  Similarity=0.307  Sum_probs=404.7

Q ss_pred             CCh-HHHHHHHHHHcCCceEEEEC------CeeccHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCcHHHHHHHHHhh
Q 008535           20 LTP-IDFLERAAHVYGDATSIIYG------TVRFSWRQTHQICLKLASALA-QLKISRGDIVAAMAPNIPALYKLHFAVP   91 (562)
Q Consensus        20 ~ti-~~~l~~~a~~~p~~~a~~~~------~~~~Ty~el~~~~~~~a~~L~-~~gv~~gd~V~i~~~~~~~~~~~~lA~~   91 (562)
                      .|+ ..+|+++++.+|+++|+++.      .+++||+||.+++.++|++|. ++|+++||+|+++++|++++++++|||+
T Consensus        58 lN~~~n~ldr~a~~~pd~~Ali~~~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA~~  137 (640)
T d1ry2a_          58 LNACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAIS  137 (640)
T ss_dssp             ECHHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhCCCCEEEEEEecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHhc
Confidence            355 57789999999999999863      268999999999999999997 5899999999999999999999999999


Q ss_pred             hccceEEecCCCCCHHHHHHHHhhCCceEEEEeccch---------HHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCC
Q 008535           92 MAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFV---------EVVQNALDILSPNHKCDKAPLLVTIPECDHYQPS  162 (562)
Q Consensus        92 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (562)
                      ++|++++|+++.++.+++.++++++++++++++....         ..+.........      ......+.......  
T Consensus       138 ~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~--  209 (640)
T d1ry2a_         138 RIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPG------VRHVLVYRKTNNPS--  209 (640)
T ss_dssp             HTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTT------CCEEEEECSSCCSS--
T ss_pred             cCceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcc------cceeeeeccccccc--
Confidence            9999999999999999999999999999999987532         222222111110      11111111111000  


Q ss_pred             cccccCCCCCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHH-hhcCCCCCCee
Q 008535          163 TCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQI-SRCDVRDMPVF  241 (562)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~-~~~~~~~~~~~  241 (562)
                          .............. ...........+..++|+++|+|||||||.||||+++|++++.+..... ..+.+.++|++
T Consensus       210 ----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~  284 (640)
T d1ry2a_         210 ----VAFHAPRDLDWATE-KKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVF  284 (640)
T ss_dssp             ----CCCCSSSEEEHHHH-HTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEE
T ss_pred             ----cccccccccccccc-ccccccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcCCCcccce
Confidence                00000000111111 1112222233345678999999999999999999999999777655444 46789999999


Q ss_pred             eeecccccchhhH-HHHHhHhhceEEEEecc----CCHHHHHHHHHhcCeEEEEcchHHHHHHHhcccc--ccccccceE
Q 008535          242 LWTLDMFRCNGWC-CTWAMAAVGGINVCIRT----VSAKIIFDSILIHKVTHLCGQPRILNMIANASAS--DQNQLQRKV  314 (562)
Q Consensus       242 l~~~pl~~~~gl~-~~~~~~~~g~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~l~~l~  314 (562)
                      ++.+|++|.+|+. .++.++..|++.++.+.    .++..+++.++++++|++.++|.+++.|.+....  ...+++++|
T Consensus       285 l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr  364 (640)
T d1ry2a_         285 FTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLR  364 (640)
T ss_dssp             EECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCC
T ss_pred             eeccchhhhhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccccccccCCCCceE
Confidence            9999999999976 46677888988888754    3889999999999999999999999999876533  345789999


Q ss_pred             EEEEeCCCChHHHHHHHH-hcC---CeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecc
Q 008535          315 IIVIAGVLPTIEVLEQVA-NFG---FNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQ  390 (562)
Q Consensus       315 ~i~~~g~~l~~~~~~~~~-~~~---~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~  390 (562)
                      .+++||+++++++.+++. .++   ..+++.||+||++..........         ........+|.|.++. .++|+|
T Consensus       365 ~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~yg~te~~~~~~~~~~~~---------~~~~~~gs~G~p~~g~-~~~i~d  434 (640)
T d1ry2a_         365 CLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGG---------VTPMKPGSASFPFFGI-DAVVLD  434 (640)
T ss_dssp             EEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTT---------CCCCCTTCCCEECTTC-CEEEEC
T ss_pred             EEEEecccCcHHHHHHHHHhcCCCcceEEeeecccccccccccccCCC---------cCCCCCcccccccCCc-eEEEEe
Confidence            999999999999999998 444   56999999999987665433211         1223345678888887 888888


Q ss_pred             cCCcccccCCCCceeEEEEcc--hhhhhhhcCCchhhHhhhc---cceeeeCceeEEcCCCcEEEeccccceeecCCeEe
Q 008535          391 QNTMKSVPHDGKTLGEVMFRA--NTVMLGYFKNPKATEEAFR---NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEII  465 (562)
Q Consensus       391 ~~~~~~~~~~~~~~Gel~v~~--~~~~~gy~~~~~~~~~~~~---~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v  465 (562)
                      .+++...+.. ++.|||++++  |+++.||+++++.+.+.|.   +|||+|||+|++|+||++++.||.||+||++|++|
T Consensus       435 ~~~~~~~~~~-~~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~~I  513 (640)
T d1ry2a_         435 PNTGEELNTS-HAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRL  513 (640)
T ss_dssp             SSSTTCEECS-SCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCB
T ss_pred             CCCCcccCCC-CceEEEEEEecCCCcccccccCHHHHHhhhccCCCCeEEcCCceeECCCCCEEEEEcCCCEEEECCEEE
Confidence            7666555443 3559999998  6899999999999988873   58999999999999999999999999999999999


Q ss_pred             chHHHHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCCCCC----------HHHHHHHHhccCCCCCCCcEEEeec
Q 008535          466 SSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREAS----------PEELVTFCGDELPSCMVPRAIFFED  535 (562)
Q Consensus       466 ~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~~----------~~~l~~~~~~~l~~~~~p~~i~~~~  535 (562)
                      +|.+||++|.+||.|.+|+|++++++..|+.++++|+++++....          .+++.+++++++++|++|+.|++++
T Consensus       514 ~p~eIE~~l~~~p~V~~a~Vvg~~d~~~ge~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~~~~~L~~~~~P~~i~~v~  593 (640)
T d1ry2a_         514 STAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVD  593 (640)
T ss_dssp             CHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECS
T ss_pred             CHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEEcCCCCccccchHHHHHHHHHHHHHHHhhCCCCCCceEEEEeC
Confidence            999999999999999999999999999999999999998764322          3578889999999999999988765


Q ss_pred             -ccCCCCCcchHHHHhhhhhhhc
Q 008535          536 -IPVNSTGKVQKFVLRGKVNATA  557 (562)
Q Consensus       536 -lP~t~~GKv~r~~l~~~~~~~~  557 (562)
                       ||+|++|||+|++||+++.++.
T Consensus       594 ~lP~T~sGKi~R~~Lr~~~~~~~  616 (640)
T d1ry2a_         594 DLPKTRSGKIMRRILRKILAGES  616 (640)
T ss_dssp             CCCBCTTSCBCHHHHHHSCC---
T ss_pred             CCCCCCCcCccHHHHHHHHhCCc
Confidence             9999999999999999987653

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=100.00  E-value=9e-71  Score=572.17  Aligned_cols=478  Identities=19%  Similarity=0.213  Sum_probs=398.3

Q ss_pred             CCCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceE
Q 008535           18 VPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVL   97 (562)
Q Consensus        18 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~   97 (562)
                      ...||.++|+++|+++|+++|+++.++++||+||.++++++|++|.++|+++||+|+++++|++++++++|||+++|+++
T Consensus        21 ~~~tl~~l~~~~a~~~Pd~~Al~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~~~G~v~  100 (514)
T d1amua_          21 RDKTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAY  100 (514)
T ss_dssp             TTCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred             CCCcHHHHHHHHHHhCCCCeEEEECCeeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHhCcEE
Confidence            45699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCch
Q 008535           98 SALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDY  177 (562)
Q Consensus        98 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (562)
                      +|+++.++.+++.++++.++++++|++......+.....          ...........                    
T Consensus       101 v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~----------~~~~~~~~~~~--------------------  150 (514)
T d1amua_         101 VPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQF----------NGQVEIFEEDT--------------------  150 (514)
T ss_dssp             EECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCC----------CSEEEECCCST--------------------
T ss_pred             EEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhcc----------ccccccccccc--------------------
Confidence            999999999999999999999999999877654432111          01111100000                    


Q ss_pred             hhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHHHH
Q 008535          178 NDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTW  257 (562)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~~~  257 (562)
                          ...........+..++++++|+|||||||.||+|.+||.++..........+.....++++...|++|..++...+
T Consensus       151 ----~~~~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~  226 (514)
T d1amua_         151 ----IKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMF  226 (514)
T ss_dssp             ----TTTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHH
T ss_pred             ----ccccccccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccccccccccccccceecccccccccccc
Confidence                0011111122345678999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhceEEEEecc---CCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHHhc
Q 008535          258 AMAAVGGINVCIRT---VSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVANF  334 (562)
Q Consensus       258 ~~~~~g~~~v~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~~~  334 (562)
                      .++..+++.+....   .+....+..+..+.++.+..+|......      ...++.+++.++++|+.++++..+++.+ 
T Consensus       227 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~G~~~~~~~~~~~~~-  299 (514)
T d1amua_         227 MALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHL------DPERILSIQTLITAGSATSPSLVNKWKE-  299 (514)
T ss_dssp             HHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTS------CTTTCCSCSEEEEESSCCCHHHHHHHTT-
T ss_pred             ccccccccccccccccccchhhhhhhhhhhhcccccceeeecccc------cccccccccEEEEecccCCHHHhhhhcc-
Confidence            99999999888753   5667788999999999999998765432      3466889999999999999998887765 


Q ss_pred             CCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhh
Q 008535          335 GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTV  414 (562)
Q Consensus       335 ~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~  414 (562)
                      ++.+++.||+||++.+++...........         ....+.+.+.. .+.+.+. ++..++.|  +.|||+|+||.+
T Consensus       300 ~~~~~~~yG~tE~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~-~v~~~d~-~~~~~~~g--~~GEl~v~~~~~  366 (514)
T d1amua_         300 KVTYINAYGPTETTICATTWVATKETIGH---------SVPIGAPIQNT-QIYIVDE-NLQLKSVG--EAGELCIGGEGL  366 (514)
T ss_dssp             TSEEEEEECCGGGSSCSEEEECCSSCCCS---------SCCCBEECTTE-EEEEECT-TSCBCCTT--CEEEEEEEETTC
T ss_pred             ceeEEEeeccccCceeeeeccccccccCc---------ccccccceeee-eEeeecc-cceecCCC--CeeEEEEccCcc
Confidence            68899999999998877654433221111         12233333333 5555554 66667766  779999999999


Q ss_pred             hhhhcCCchhhHhhhc-------cceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEe
Q 008535          415 MLGYFKNPKATEEAFR-------NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVG  487 (562)
Q Consensus       415 ~~gy~~~~~~~~~~~~-------~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~  487 (562)
                      +.||++++..+...|.       +|||+|||+|++|+||++++.||.+|+|+.+|++|+|.+||++|.++|+|.+++|++
T Consensus       367 ~~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~l~i~GR~~d~i~~~G~~i~p~~IE~~l~~~~~V~~~~V~~  446 (514)
T d1amua_         367 ARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSV  446 (514)
T ss_dssp             CCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEE
T ss_pred             cccccccccccceeeEeccccCCCceEEECCEEEECCCCcEEEEecccCEEEECCEEECHHHHHHHHHhCCCccEEEEEE
Confidence            9999999999988873       689999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhh
Q 008535          488 KVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRG  551 (562)
Q Consensus       488 ~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~  551 (562)
                      .+++..++.++++|+++++  .+.++++++++++|+.|++|..+++++ ||+|++|||+|++||+
T Consensus       447 ~~~~~~g~~~~a~v~~~~~--~~~~~l~~~~~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~  509 (514)
T d1amua_         447 HKDHQEQPYLCAYFVSEKH--IPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPE  509 (514)
T ss_dssp             EECTTSCEEEEEEEEESSC--CCHHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCC
T ss_pred             EECCCCCEEEEEEEEcCCC--CCHHHHHHHHHhhCCcccCceEEEEeCCCCCCCCcChhHHhcCC
Confidence            9999999999999998765  578999999999999999999988765 9999999999999987

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=7.2e-70  Score=568.53  Aligned_cols=500  Identities=23%  Similarity=0.307  Sum_probs=415.4

Q ss_pred             CCCCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccce
Q 008535           17 NVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAV   96 (562)
Q Consensus        17 ~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~   96 (562)
                      +.+.||.++|+++|+++||++|+++.++++||+||++++.++|+.|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus        22 ~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G~i  101 (536)
T d1mdba_          22 WAGETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGAL  101 (536)
T ss_dssp             SCSCCHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCE
T ss_pred             CCCCCHHHHHHHHHHHCCCCeEEEECCEeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHhCcE
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHhhCCceEEEEeccchHHH-----HHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCC
Q 008535           97 LSALNTRLDSATLASILRQLEAKIIFVDYQFVEVV-----QNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFP  171 (562)
Q Consensus        97 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (562)
                      ++|++|..+.+++.++++.++++++++++......     .........      ....+......              
T Consensus       102 ~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~--------------  161 (536)
T d1mdba_         102 PVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPT------LKNIIVAGEAE--------------  161 (536)
T ss_dssp             EEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTT------CCCEEEESCCT--------------
T ss_pred             EEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhcccc------ccceeeeeccc--------------
Confidence            99999999999999999999999999986543211     111111110      11111111100              


Q ss_pred             CCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccch
Q 008535          172 SGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCN  251 (562)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~  251 (562)
                       ....+.+.    ........+..++|+++|+|||||||.||||++||+++..++......+.+.+++++++..|++|.+
T Consensus       162 -~~~~~~~~----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~  236 (536)
T d1mdba_         162 -EFLPLEDL----HTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNY  236 (536)
T ss_dssp             -TSEEGGGC----CCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHH
T ss_pred             -cccchhhc----ccCCcCCCccCccchHHhhhcccccccceeccccccccccccccccccccccccccccccccccccc
Confidence             01111111    1111222345678999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHH--HHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHH
Q 008535          252 GWCC--TWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLE  329 (562)
Q Consensus       252 gl~~--~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~  329 (562)
                      ++..  .......|.+.+..+.+++..++..+++++++.+..+|..+..+..........+++++.+++||++++++..+
T Consensus       237 ~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~  316 (536)
T d1mdba_         237 PLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAAR  316 (536)
T ss_dssp             HHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHT
T ss_pred             ceeeccccccccccccccccCCCCHHHHHHHHhhhccccccccchhhhhhhhhccccccccCcceeEEEecccccccccc
Confidence            9764  33334446677777789999999999999999999999999999888777778899999999999999999999


Q ss_pred             HHH-hcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEE
Q 008535          330 QVA-NFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVM  408 (562)
Q Consensus       330 ~~~-~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~  408 (562)
                      ++. .++......|+.+|.+..+....           ..........|.|..+.... +++.+++.+++.+  +.|||+
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~g~p~~~~~~~-~v~~~~g~~~~~~--~~Gel~  382 (536)
T d1mdba_         317 RVKAVFGCTLQQVFGMAEGLVNYTRLD-----------DPEEIIVNTQGKPMSPYDES-RVWDDHDRDVKPG--ETGHLL  382 (536)
T ss_dssp             THHHHTCSEEEEEEECTTSCEEECCTT-----------SCHHHHHHCCCEESSTTCEE-EEECTTSCBCCTT--CCEEEE
T ss_pred             chhhccCceeeeccccccccccccccc-----------cccccccCCcccCCCCcceE-EEEcCCCCeeccc--ccceee
Confidence            888 56899999999998765444321           22233345677777776344 4444577777776  679999


Q ss_pred             EcchhhhhhhcCCchhhHhhhc-cceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEe
Q 008535          409 FRANTVMLGYFKNPKATEEAFR-NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVG  487 (562)
Q Consensus       409 v~~~~~~~gy~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~  487 (562)
                      ++|+.++.||++++..+...+. +|||+|||++++++||.+++.||.||+||++|.+|+|.+||++|.++|+|.+++|++
T Consensus       383 v~g~~~~~gY~~~~~~~~~~~~~~~~~~tGD~~~~~~dG~l~~~GR~~d~i~~~G~~i~p~~IE~~l~~~p~V~~a~vvg  462 (536)
T d1mdba_         383 TRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVS  462 (536)
T ss_dssp             EECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEE
T ss_pred             cCCCccccccccccccccccccccCccccCccccccCCCceecCCCcceEEEECCEEECHHHHHHHHHhCCCccEEEEEE
Confidence            9999999999999888877774 689999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhcc-CCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhh
Q 008535          488 KVDDQLKEVPVAFVKLKEGREASPEELVTFCGDE-LPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNAT  556 (562)
Q Consensus       488 ~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~-l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~  556 (562)
                      .+++..++.++++|++.++ ....++++++++++ ++.|++|+.+.+++ ||+|++|||+|++|++++.++
T Consensus       463 ~~~~~~g~~~~a~v~~~~~-~~~~~~l~~~l~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~  532 (536)
T d1mdba_         463 MPDQFLGERSCVFIIPRDE-APKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEK  532 (536)
T ss_dssp             EEETTTEEEEEEEEEESSS-CCCHHHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHH
T ss_pred             EEcCCCCeEEEEEEEECCC-CCCHHHHHHHHHhcCCCcCcCccEEEEECCCCcCCCcCccHHHHHHHHHHH
Confidence            9999889999999998765 46788999999875 99999999887655 999999999999999998754

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=100.00  E-value=4e-65  Score=528.03  Aligned_cols=489  Identities=26%  Similarity=0.319  Sum_probs=394.1

Q ss_pred             ChHHHHHHHHHHcCCceEEEEC--CeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEE
Q 008535           21 TPIDFLERAAHVYGDATSIIYG--TVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLS   98 (562)
Q Consensus        21 ti~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v   98 (562)
                      ||.++|+++|+.+|+++|+.+.  ++++||+||.+++.++|++|.+.|+++||+|+++++|++++++++|||+++|++++
T Consensus         3 ti~~~l~~~a~~~pd~~al~~~~~~~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~v   82 (503)
T d3cw9a1           3 TVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPA   82 (503)
T ss_dssp             CHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEE
T ss_pred             CHHHHHHHHHHhCCCCeEEEECCCCcEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHHhCcEEE
Confidence            8999999999999999999985  46899999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCchh
Q 008535           99 ALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYN  178 (562)
Q Consensus        99 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (562)
                      |+++.++.++++++++.+++++++++....... .......       ...++.+.+....                   
T Consensus        83 pi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~~-~~~~~~~-------~~~~i~~~~~~~~-------------------  135 (503)
T d3cw9a1          83 LLNPRLKSAELAELIKRGEMTAAVIAVGRQVAD-AIFQSGS-------GARIIFLGDLVRD-------------------  135 (503)
T ss_dssp             EECTTSCHHHHHHHHHHTTCSEEEESSCHHHHH-HHHHTTC-------CCEEEEHHHHEET-------------------
T ss_pred             EeCCCCCHHHHHHHHHhcCCcEEEeecchHHHH-HHhhhcc-------ccccccchhhhhh-------------------
Confidence            999999999999999999999999987633221 1111111       2233322111000                   


Q ss_pred             hhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcC--CCCCCeeeeecccccchhhHH-
Q 008535          179 DLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCD--VRDMPVFLWTLDMFRCNGWCC-  255 (562)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~--~~~~~~~l~~~pl~~~~gl~~-  255 (562)
                       ................++++++++|||||||.||+|.++|.++..........+.  ....+.+...+|++|..+... 
T Consensus       136 -~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  214 (503)
T d3cw9a1         136 -GEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAV  214 (503)
T ss_dssp             -TEECCCSCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHHHHTT
T ss_pred             -hcccccCCccccccchhhhhhhhcccccccccccccccccchhhhhhhhccccccccccccccccccCccccccccccc
Confidence             0000000111112346789999999999999999999999999888887777654  456688999999987777664 


Q ss_pred             HHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccc--cccccccceEEEEEeCCCChHHHHHHHH-
Q 008535          256 TWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASA--SDQNQLQRKVIIVIAGVLPTIEVLEQVA-  332 (562)
Q Consensus       256 ~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~--~~~~~l~~l~~i~~~g~~l~~~~~~~~~-  332 (562)
                      .+.+...++.++..+.+++..+...+.+++++.++.+|..+..+.....  .....++++|.+++||++++++....+. 
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~  294 (503)
T d3cw9a1         215 LVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQ  294 (503)
T ss_dssp             HHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTTCCCTTCCEEEECSSCCCHHHHHHHHH
T ss_pred             cccccccccccccccccChHHhhhhhhhceeeccccccccccccccccccccccccccceEEEEeccccccccccccccc
Confidence            5556677788888888999999999999999999999999998766543  2345578999999999999999998888 


Q ss_pred             hcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcch
Q 008535          333 NFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRAN  412 (562)
Q Consensus       333 ~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~  412 (562)
                      .++..+.+.||.+|++..+..........            ...+.+...  .........++.++.|  +.|++++.+.
T Consensus       295 ~~~~~~~~~yg~~e~~~~~~~~~~~~~~~------------~~~~~~~~~--~~~~~~~~~~~~~~~g--~~g~~~~~~~  358 (503)
T d3cw9a1         295 HLPGEKVNIYGTTEAMNSLYMRQPKTGTE------------MAPGFFSEV--RIVRIGGGVDEIVANG--EEGELIVAAS  358 (503)
T ss_dssp             HCCSEEEEEEEETTTEEEEEEESCSSSSE------------EBCCTTCCE--EEECTTSCTTCBCCTT--CCEEEEEECC
T ss_pred             cccccccccccccccceeeeecccccccc------------ccccccccc--eeeeeecccCcccCCC--cccccccccc
Confidence            55889999999999977666543222111            111111111  2222233455666665  5587777655


Q ss_pred             -hhhhhhcCCchhhHhhhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCC
Q 008535          413 -TVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDD  491 (562)
Q Consensus       413 -~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~  491 (562)
                       ....+|++++..+.+.|.+|||+|||+|++|+||.+++.||.||+||++|++|+|.+||++|.++|+|.+|+|++.+++
T Consensus       359 ~~~~~~~~~~~~~t~~~~~~g~~~TgD~g~~~~dG~l~~~GR~~d~ik~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~  438 (503)
T d3cw9a1         359 DSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQ  438 (503)
T ss_dssp             TTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEESSCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEET
T ss_pred             ccccccccCChhhhHHHhcCCceecccccccccCCeEEeCCCcCCeEEECCEEECHHHHHHHHHhCCCccEEEEEEEECC
Confidence             5667888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeEEEEEeCCCCCCCHHHHHHHHh-ccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhh
Q 008535          492 QLKEVPVAFVKLKEGREASPEELVTFCG-DELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKV  553 (562)
Q Consensus       492 ~~~~~~v~~v~~~~~~~~~~~~l~~~~~-~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~  553 (562)
                      ..++.++++|+++++...+.++++++++ +.+++|++|+.|.+++ ||+|++|||+|++|++.+
T Consensus       439 ~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~~P~t~~GKi~R~~L~~~~  502 (503)
T d3cw9a1         439 RWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQV  502 (503)
T ss_dssp             TTEEEEEEEEEECTTCCCCHHHHHHHHHHSSSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHH
T ss_pred             CCCeEEEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCCccEEEEECCCCcCCCcCccHHHHHHhc
Confidence            8899999999999888889999999995 6799999999888665 999999999999998875

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=82.35  E-value=3  Score=39.72  Aligned_cols=112  Identities=13%  Similarity=0.048  Sum_probs=79.2

Q ss_pred             eEEEeccCCCCCCCceEeechhHHHHHHHHHh---hcCCCCCCeeeeecccccchhhHHHHHhHhhceEEEEec-cCCHH
Q 008535          200 ISVNYTSGSTGDPKGVVYSHRGAYLNSLAQIS---RCDVRDMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCIR-TVSAK  275 (562)
Q Consensus       200 a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~gl~~~~~~~~~g~~~v~~~-~~~~~  275 (562)
                      +.+.++.+.++    ..+|++.+...+.....   ..+++++|++...++... -.+...++++..|+..+.+. ....+
T Consensus        35 ~~~a~~d~~~~----~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~-e~~v~~lA~~~~G~i~vpl~~~~~~~  109 (541)
T d1lcia_          35 GTIAFTDAHIE----VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSL-QFFMPVLGALFIGVAVAPANDIYNER  109 (541)
T ss_dssp             TCEEEEETTTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCS-STHHHHHHHHHHTCEEEECCTTCCHH
T ss_pred             CeEEEEeCCCC----eEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCH-HHHHHHHHHHHhCeEEEecCCCCCHH
Confidence            33444544443    46899988776665554   447899999988887643 33456677888898888775 46788


Q ss_pred             HHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeC
Q 008535          276 IIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAG  320 (562)
Q Consensus       276 ~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g  320 (562)
                      .+...++..++.+++.....+..+.+..    ..++.++.+++..
T Consensus       110 ~l~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~~~~  150 (541)
T d1lcia_         110 ELLNSMNISQPTVVFVSKKGLQKILNVQ----KKLPIIQKIIIMD  150 (541)
T ss_dssp             HHHHHHHHHCCSEEEECGGGHHHHHHHH----HHCTTCCEEEETT
T ss_pred             HHHHHHHhccceEEeeeccccccchhcc----ccccccceeeeec
Confidence            9999999999999999988877765543    3355566665543